Citrus Sinensis ID: 021932

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MQQPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVS
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHcccccEEEEEEccccccHHHccccccccccEEEEcccccHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHcccccccEEEccHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHccccHHcHHHHHHHHHcccccccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccc
Coil and Loop (DISEMBL)
MQQPTSGANQRIARIAahlhpptlqiegessglgrmdcrakggspgfKVAVLGaaggigqplAMLMKINPLVSVLHLYdvvntpgvtadishmdtnAVVRGFLGQQQLedaltgmdiviipagvprkpgmtrddlfnINAGIVKTLCEGIAKCCPKAIVNlisnpvnstvPIAAEVFkkvgtydpkrllGVTMLDVVRANTFVAEVlgldprevdvpvvgghagvTILPllsqvkpscsltpteiDYLTDriqnggtevveaktgagsaTLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVS
Flexible Loop (DISEMBL)
MQQPTSGANQRIARiaahlhpptlQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAevlgldprevdVPVVGGHAGVTilpllsqvkpsCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVS
Low Complexity Region (SEG)
MQQPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVS
Disordered region (IsUnstruct)
********************************************PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVA****
Disordered Region (DISOPRED)
***********************************************KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTV*
Disordered Region (DISEMBL)
**********RIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVS
Disordered Region (DISPRO)
******************LH************************PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAST**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
P19446	356	Malate dehydrogenase, gly	N/A	no	0.990	0.848	0.874	1e-153
P46488	356	Malate dehydrogenase, gly	N/A	no	0.990	0.848	0.871	1e-151
O82399	354	Probable malate dehydroge	yes	no	0.973	0.838	0.848	1e-147
P37228	353	Malate dehydrogenase, gly	yes	no	0.980	0.847	0.838	1e-144
Q42972	356	Malate dehydrogenase, gly	yes	no	0.960	0.823	0.833	1e-141
Q9ZP05	354	Malate dehydrogenase, gly	no	no	0.967	0.833	0.842	1e-139
Q9XFW3	358	Malate dehydrogenase 2, g	N/A	no	0.977	0.832	0.839	1e-138
Q43743	358	Malate dehydrogenase 1, g	N/A	no	0.977	0.832	0.829	1e-136
P17783	347	Malate dehydrogenase, mit	N/A	no	0.855	0.752	0.685	9e-99
Q9ZP06	341	Malate dehydrogenase 1, m	no	no	0.872	0.780	0.669	1e-98

>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1

 Score =  540 bits (1390), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 265/303 (87%), Positives = 279/303 (92%), Gaps = 1/303 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGVIECA+V+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300

Query: 303 TVS 305
            V+
Sbjct: 301 QVT 303

Citrullus lanatus (taxid: 3654)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1

 Score =  535 bits (1379), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 264/303 (87%), Positives = 279/303 (92%), Gaps = 1/303 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKYQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD+V+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+V+VPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EI+YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGV+ECA+V+S
Sbjct: 241 EEINYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSS 300

Query: 303 TVS 305
            V+
Sbjct: 301 QVT 303

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|O82399|MDHG2_ARATH Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1

 Score =  519 bits (1337), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/298 (84%), Positives = 275/298 (92%), Gaps = 1/298 (0%)

Query: 9   NQRIARIAAHLHPPTLQIE-GESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67
           NQRIARI+AHL+PP L  +  + SGL R+ CRAKGGSPGFKVA+LGAAGGIGQPLAMLMK
Sbjct: 4   NQRIARISAHLNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAMLMK 63

Query: 68  INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127
           +NPLVSVLHLYDV N PGVTADISHMDT+AVVRGFLGQ QLE+ALTGMD+VIIPAGVPRK
Sbjct: 64  MNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRK 123

Query: 128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
           PGMTRDDLFNINAGIV+TL E IAKCCPKAIVN+ISNPVNSTVPIAAEVFKK GT+DPK+
Sbjct: 124 PGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPKK 183

Query: 188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247
           L+GVTMLDVVRANTFVAEV+ LDPREV+VPVVGGHAGVTILPLLSQVKP CS T  EI+Y
Sbjct: 184 LMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEIEY 243

Query: 248 LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVS 305
           LTDRIQNGGTEVVEAK GAGSATLSMAYAA +FADACLRGLRGDA ++ECAYVAS V+
Sbjct: 244 LTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDANIVECAYVASHVT 301

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2

 Score =  512 bits (1318), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 254/303 (83%), Positives = 272/303 (89%), Gaps = 4/303 (1%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           +  SGA+ RI+RIA HL P   Q E +   L R DCRAKGG  GFKVA+LGAAGGIGQPL
Sbjct: 2   EANSGASDRISRIAGHLRP---QREDDVC-LKRSDCRAKGGVSGFKVAILGAAGGIGQPL 57

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVS+LHLYDVVNTPGVT+DISHMDT AVVRGFLGQQQLEDAL GMD+VIIPA
Sbjct: 58  AMLMKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPA 117

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLFNINAGIVKTLCE IAKCCPKAIVN+ISNPVNSTVPIAAEVFK+ GT
Sbjct: 118 GVPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNVISNPVNSTVPIAAEVFKRAGT 177

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLG+DPR+VDVPVVGGHAG+TILPLLSQ+KP CS TP
Sbjct: 178 YDPKRLLGVTMLDVVRANTFVAEVLGVDPRDVDVPVVGGHAGITILPLLSQIKPPCSFTP 237

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EI+YLT RIQNGG EVVEAK GAGSATLSMAYAA KFADACL  LRGDAG+IECAYVAS
Sbjct: 238 KEIEYLTGRIQNGGPEVVEAKAGAGSATLSMAYAAVKFADACLHALRGDAGIIECAYVAS 297

Query: 303 TVS 305
            V+
Sbjct: 298 QVT 300

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3

 Score =  502 bits (1293), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 245/294 (83%), Positives = 269/294 (91%), Gaps = 1/294 (0%)

Query: 12  IARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPL 71
           + R+A+HL PP  Q+E ES  L   +CRAKG +PGFKVA+LGA+GGIGQPLA+LMK+NPL
Sbjct: 11  MERLASHLRPPASQME-ESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPL 69

Query: 72  VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMT 131
           VSVLHLYDVVNTPGVTADISHM+T AVVRGFLGQ QLE+ALTGMD+VIIPAGVPRKPGMT
Sbjct: 70  VSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMT 129

Query: 132 RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191
           RDDLFNINAGIV+TLCEGIAKCCP AIVN+ISNPVNSTVPIAAEVFKK GTYDPKRLLGV
Sbjct: 130 RDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGV 189

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T LDVVRANTFVAEVLGLDPR+V+VPV+GGHAGVTILPLLSQV P CS T  EI YLT R
Sbjct: 190 TTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTSEEISYLTTR 249

Query: 252 IQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVS 305
           IQNGGTEVVEAK GAGSATLSMAYAA+KFADACLRGLRGDAG++EC++VAS V+
Sbjct: 250 IQNGGTEVVEAKAGAGSATLSMAYAASKFADACLRGLRGDAGIVECSFVASQVT 303

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP05|MDHG1_ARATH Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1

 Score =  494 bits (1271), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 251/298 (84%), Positives = 275/298 (92%), Gaps = 3/298 (1%)

Query: 8   ANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67
           ANQRIARI+AHL P   Q+E ++S +GR +CRAKGG+PGFKVA+LGAAGGIGQ L++LMK
Sbjct: 7   ANQRIARISAHLTP---QMEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMK 63

Query: 68  INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127
           +NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAG+PRK
Sbjct: 64  MNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRK 123

Query: 128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
           PGMTRDDLF INAGIVKTLCEG+AKCCP AIVNLISNPVNSTVPIAAEVFKK GTYDPK+
Sbjct: 124 PGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKK 183

Query: 188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247
           LLGVT LDV RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP  S TP EI+Y
Sbjct: 184 LLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEY 243

Query: 248 LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVS 305
           LT+RIQNGGTEVVEAK GAGSATLSMAYAAAKFADACLRGLRGDA V+EC++VAS V+
Sbjct: 244 LTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVVECSFVASQVT 301

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9XFW3|MDHG2_BRANA Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1

 Score =  491 bits (1265), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 251/299 (83%), Positives = 275/299 (91%), Gaps = 1/299 (0%)

Query: 8   ANQRIARIAAHLHPP-TLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLM 66
           AN+RIA I+AHL P  T Q+E ++S +GR +CRAKGG+PGFKVA+LGAAGGIGQ L++LM
Sbjct: 7   ANKRIAMISAHLQPSFTPQMEAKNSVMGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLM 66

Query: 67  KINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126
           K+NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAGVPR
Sbjct: 67  KMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPR 126

Query: 127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186
           KPGMTRDDLF INAGIVKTLCEG+AKCCP AIVNLISNPVNSTV IAAEVFKK GTYDPK
Sbjct: 127 KPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPK 186

Query: 187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEID 246
           +LLGVT LDV RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP  S TP+EI+
Sbjct: 187 KLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPSEIE 246

Query: 247 YLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVS 305
           YLT+RIQNGGTEVVEAK GAGSATLSMAYAAAKFADACLRGLRGDA VIEC++VAS V+
Sbjct: 247 YLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVIECSFVASQVT 305

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q43743|MDHG1_BRANA Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2

 Score =  483 bits (1243), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/299 (82%), Positives = 272/299 (90%), Gaps = 1/299 (0%)

Query: 8   ANQRIARIAAHLHPP-TLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLM 66
           A +RIA I+AHL P  T Q+E ++S +G   CRAKGG+PGFKVA+LGAAGGIGQ L++LM
Sbjct: 7   AYKRIAMISAHLQPSFTPQMEAKNSVMGLESCRAKGGNPGFKVAILGAAGGIGQSLSLLM 66

Query: 67  KINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR 126
           K+NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAGVPR
Sbjct: 67  KMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPR 126

Query: 127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186
           KPGMTRDDLF INAGIV+TLCEG+AKCCP AIVNLISNPVNSTV IAAEVFKK GTYDPK
Sbjct: 127 KPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPK 186

Query: 187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEID 246
           +LLGVT LDV RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP  S TP+EI+
Sbjct: 187 KLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPSEIE 246

Query: 247 YLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVS 305
           YLT+RIQNGGTEVVEAK GAGSATLSMAYAAAKFADACLRGLRGDA VIEC++VAS V+
Sbjct: 247 YLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVIECSFVASQVT 305

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1

 Score =  360 bits (923), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 179/261 (68%), Positives = 208/261 (79%)

Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG 104
           P  KVAVLGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+ H++T + V G++G
Sbjct: 33  PERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVG 92

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           ++QL  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK+LC  IAK CP A++N+ISN
Sbjct: 93  EEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALINMISN 152

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PVNSTVPIAAEVFKK GTYD K+L GVT LDVVRA TF A    +   EV+VPV+GGHAG
Sbjct: 153 PVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPVIGGHAG 212

Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
           +TILPL SQ  P  +L+   I  LT R Q+GGTEVVEAK G GSATLSMAYA A FADAC
Sbjct: 213 ITILPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADAC 272

Query: 285 LRGLRGDAGVIECAYVASTVS 305
           L+GL G   V+EC++V STV+
Sbjct: 273 LKGLNGVPDVVECSFVQSTVT 293

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP06|MDHM1_ARATH Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1

 Score =  359 bits (922), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 178/266 (66%), Positives = 206/266 (77%)

Query: 40  AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV 99
           + G  P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V
Sbjct: 23  SSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEV 82

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
            G++G   L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC  IAK CP A++
Sbjct: 83  VGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALI 142

Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV 219
           N+ISNPVNSTVPIAAE+FKK G YD K+L GVT LDVVRA TF A    +   EV+VPV+
Sbjct: 143 NMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRARTFYAGKANVPVAEVNVPVI 202

Query: 220 GGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 279
           GGHAGVTILPL SQ  P  +L+   +  LT R Q+GGTEVVEAK G GSATLSMAYA A 
Sbjct: 203 GGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAL 262

Query: 280 FADACLRGLRGDAGVIECAYVASTVS 305
           FADACL+GL G   VIEC+YV ST++
Sbjct: 263 FADACLKGLNGVPDVIECSYVQSTIT 288

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
359496625	356	PREDICTED: malate dehydrogenase, glyoxys	0.990	0.848	0.894	1e-154
60593475	362	Chain A, Mature And Translocatable Forms	0.990	0.834	0.874	1e-151
126894	356	RecName: Full=Malate dehydrogenase, glyo	0.990	0.848	0.874	1e-151
359475502	356	PREDICTED: malate dehydrogenase, glyoxys	0.990	0.848	0.871	1e-151
255562058	356	malate dehydrogenase, putative [Ricinus	0.983	0.842	0.867	1e-150
1170897	356	RecName: Full=Malate dehydrogenase, glyo	0.990	0.848	0.871	1e-150
449451347	356	PREDICTED: malate dehydrogenase, glyoxys	0.990	0.848	0.871	1e-150
224097202	354	predicted protein [Populus trichocarpa]	0.986	0.850	0.845	1e-148
118489009	354	unknown [Populus trichocarpa x Populus d	0.980	0.844	0.863	1e-147
224103817	354	predicted protein [Populus trichocarpa]	0.980	0.844	0.86	1e-147

>gi|359496625|ref|XP_002263670.2| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|297739396|emb|CBI29427.3| unnamed protein product [Vitis vinifera]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 271/303 (89%), Positives = 282/303 (93%), Gaps = 1/303 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
            PTS ANQRIARI+AHL P   Q+ GESSGL R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   HPTSDANQRIARISAHLQPSNFQM-GESSGLSRENCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVNTPGVT+DISHMDT AVVRGFLGQQQLEDALTGMD+VIIPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALTGMDLVIIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           +DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP CS TP
Sbjct: 181 FDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPCSFTP 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EIDYLT RIQNGGTEVVEAK GAGSATLSMAYAA KFAD CLRGLRGDAGVI+CAYV S
Sbjct: 241 EEIDYLTARIQNGGTEVVEAKAGAGSATLSMAYAAVKFADTCLRGLRGDAGVIQCAYVFS 300

Query: 303 TVS 305
            V+
Sbjct: 301 QVT 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60593475|pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593476|pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/303 (87%), Positives = 279/303 (92%), Gaps = 1/303 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGVIECA+V+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300

Query: 303 TVS 305
            V+
Sbjct: 301 QVT 303

Source: Citrullus lanatus

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126894|sp|P19446.1|MDHG_CITLA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|167284|gb|AAA33041.1| glyoxysomal malate dehydrogenase precursor (EC 1.1.1.37) [Citrullus lanatus subsp. vulgaris]

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/303 (87%), Positives = 279/303 (92%), Gaps = 1/303 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGVIECA+V+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300

Query: 303 TVS 305
            V+
Sbjct: 301 QVT 303

Source: Citrullus lanatus subsp. vulgaris

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475502|ref|XP_003631692.1| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|147774268|emb|CAN65552.1| hypothetical protein VITISV_033330 [Vitis vinifera] gi|297736349|emb|CBI25072.3| unnamed protein product [Vitis vinifera]

 Score =  538 bits (1387), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 264/303 (87%), Positives = 280/303 (92%), Gaps = 1/303 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QPT+ ANQRIAR++AHL+P   Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPTAEANQRIARLSAHLYPSVRQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQ QLE ALTGMD+VIIPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLFNINAGIV+TLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGH+GVTILPLLSQVKP CS TP
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHSGVTILPLLSQVKPPCSFTP 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            E  YLT+RIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGV+EC +VAS
Sbjct: 241 EETQYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECTFVAS 300

Query: 303 TVS 305
            V+
Sbjct: 301 QVT 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562058|ref|XP_002522037.1| malate dehydrogenase, putative [Ricinus communis] gi|223538636|gb|EEF40237.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/301 (86%), Positives = 280/301 (93%), Gaps = 1/301 (0%)

Query: 5   TSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAM 64
           ++ A QRIARI+AHLHPP  Q+EG SS L R DCRAKGGSPGFKVA+LGAAGGIGQPLAM
Sbjct: 4   SAEAAQRIARISAHLHPPNFQMEG-SSALKRADCRAKGGSPGFKVAILGAAGGIGQPLAM 62

Query: 65  LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV 124
           LMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQ QLE+ALTGMD+V+IPAGV
Sbjct: 63  LMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVVIPAGV 122

Query: 125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYD 184
           PRKPGMTRDDLFNINAGIV+TLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GTYD
Sbjct: 123 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYD 182

Query: 185 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTE 244
           PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP CS T  E
Sbjct: 183 PKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPCSFTSEE 242

Query: 245 IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTV 304
            +YLT RIQ+GGTEVV+AK GAGSATLSMAYAA KFADACLRGLRGDAG++EC++VAS V
Sbjct: 243 TEYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADACLRGLRGDAGIVECSFVASQV 302

Query: 305 S 305
           +
Sbjct: 303 T 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1170897|sp|P46488.1|MDHG_CUCSA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|695311|gb|AAC41647.1| glyoxysomal malate dehydrogenase [Cucumis sativus]

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 264/303 (87%), Positives = 279/303 (92%), Gaps = 1/303 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKYQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD+V+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+V+VPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EI+YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGV+ECA+V+S
Sbjct: 241 EEINYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSS 300

Query: 303 TVS 305
            V+
Sbjct: 301 QVT 303

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451347|ref|XP_004143423.1| PREDICTED: malate dehydrogenase, glyoxysomal-like [Cucumis sativus] gi|449499834|ref|XP_004160930.1| PREDICTED: malate dehydrogenase, glyoxysomal-like [Cucumis sativus]

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 264/303 (87%), Positives = 279/303 (92%), Gaps = 1/303 (0%)

Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKYQME-ESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60

Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD+V+IPA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLVVIPA 120

Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGT 180

Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+V+VPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQ 240

Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EI+YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGV+ECA+V+S
Sbjct: 241 EEINYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSS 300

Query: 303 TVS 305
            V+
Sbjct: 301 QVT 303

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097202|ref|XP_002310874.1| predicted protein [Populus trichocarpa] gi|222853777|gb|EEE91324.1| predicted protein [Populus trichocarpa]

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 258/305 (84%), Positives = 277/305 (90%), Gaps = 4/305 (1%)

Query: 1   MQQPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQ 60
           MQQ    +N R+ARIAAH++PP LQ+  E  GL R++CRAKG S GFKVA+LGAAGGIGQ
Sbjct: 1   MQQ----SNLRVARIAAHINPPNLQMVEEDLGLERVNCRAKGASSGFKVAILGAAGGIGQ 56

Query: 61  PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII 120
           PLAMLMK+NPLVS+LHLYDVVN PGVTADISHMDT+AVVRGFLGQQQLEDAL GMD+VII
Sbjct: 57  PLAMLMKMNPLVSLLHLYDVVNAPGVTADISHMDTSAVVRGFLGQQQLEDALIGMDLVII 116

Query: 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV 180
           PAGVPRKPGMTRDDLFNINAGIVKTLCE IAKCCPKAIVN+ISNPVNSTVPIAAEVFKK 
Sbjct: 117 PAGVPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKA 176

Query: 181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSL 240
           G +DPKR+LGVTMLDVVRANTFVAE++GLDPREVDVPVVGGHAGVTILPLLSQVKP CS 
Sbjct: 177 GVFDPKRVLGVTMLDVVRANTFVAEIMGLDPREVDVPVVGGHAGVTILPLLSQVKPLCSF 236

Query: 241 TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV 300
           T  EIDYLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLR LRGDA V+ CAYV
Sbjct: 237 TQKEIDYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRALRGDAAVVHCAYV 296

Query: 301 ASTVS 305
           AS V+
Sbjct: 297 ASEVT 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489009|gb|ABK96312.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/300 (86%), Positives = 275/300 (91%), Gaps = 1/300 (0%)

Query: 6   SGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAML 65
           S ANQRIAR++AHL PP  Q+E ES  L R DCRAKGG+PGFKVA+LGAAGGIGQPLAML
Sbjct: 3   SVANQRIARVSAHLQPPNSQME-ESCVLKRTDCRAKGGAPGFKVAILGAAGGIGQPLAML 61

Query: 66  MKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125
           MK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQ QLE+ALTGMD+VIIPAGVP
Sbjct: 62  MKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 121

Query: 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP 185
           RKPGMTRDDLF INAGIV+TLCEG+AKCCP AIVNLISNPVNSTVPIAAEVFKK GTYDP
Sbjct: 122 RKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDP 181

Query: 186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEI 245
           KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ KP  S TP E 
Sbjct: 182 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQAKPPSSFTPEET 241

Query: 246 DYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVS 305
           +YLT RIQ+GGTEVV+AK GAGSATLSMAYAA KFADACLRGLRGDAGV+ECA+VAS V+
Sbjct: 242 EYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASEVT 301

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103817|ref|XP_002313205.1| predicted protein [Populus trichocarpa] gi|118487242|gb|ABK95449.1| unknown [Populus trichocarpa] gi|222849613|gb|EEE87160.1| predicted protein [Populus trichocarpa]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 258/300 (86%), Positives = 274/300 (91%), Gaps = 1/300 (0%)

Query: 6   SGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAML 65
           S ANQRIAR++AHL PP  Q+E ES  L R DCRAKGG+PGFKVA+LGAAGGIGQPLAML
Sbjct: 3   SVANQRIARVSAHLQPPNSQME-ESCVLKRTDCRAKGGAPGFKVAILGAAGGIGQPLAML 61

Query: 66  MKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP 125
           MK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQ QLE ALTGMD+VIIPAGVP
Sbjct: 62  MKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVP 121

Query: 126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP 185
           RKPGMTRDDLF INAGIV+TLCEG+AKCCP AIVNLISNPVNSTVPIAAEVFKK GTYDP
Sbjct: 122 RKPGMTRDDLFKINAGIVRTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDP 181

Query: 186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEI 245
           KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ KP  S TP E 
Sbjct: 182 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQAKPPSSFTPEET 241

Query: 246 DYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVS 305
           +YLT RIQ+GGTEVV+AK GAGSATLSMAYAA KFADACLRGLRGDAGV+ECA++AS V+
Sbjct: 242 EYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFIASEVT 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
TAIR|locus:2062240	354	PMDH1 "peroxisomal NAD-malate	0.973	0.838	0.848	1.8e-133
TAIR|locus:2144781	363	PMDH2 "peroxisomal NAD-malate	0.967	0.812	0.842	4.4e-132
TAIR|locus:2009605	341	mMDH1 "mitochondrial malate de	0.872	0.780	0.669	5.7e-91
TAIR|locus:2086340	341	mMDH2 "mitochondrial malate de	0.855	0.765	0.670	2.2e-89
TAIR|locus:2079177	403	MDH "malate dehydrogenase" [Ar	0.849	0.642	0.664	1.2e-88
FB|FBgn0262559	336	Mdh2 "Malate dehydrogenase 2"	0.865	0.785	0.628	6e-87
UNIPROTKB|F1PYG8	338	MDH2 "Malate dehydrogenase" [C	0.836	0.754	0.627	3.4e-84
WB|WBGene00003162	341	mdh-2 [Caenorhabditis elegans	0.908	0.812	0.614	3.4e-84
UNIPROTKB|E1BVT3	337	MDH2 "Malate dehydrogenase" [G	0.868	0.786	0.614	5.6e-84
UNIPROTKB|J9NY79	338	J9NY79 "Malate dehydrogenase"	0.836	0.754	0.623	1.2e-83

TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1308 (465.5 bits), Expect = 1.8e-133, P = 1.8e-133
 Identities = 253/298 (84%), Positives = 275/298 (92%)

Query:     9 NQRIARIAAHLHPPTLQIE-GESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67
             NQRIARI+AHL+PP L  +  + SGL R+ CRAKGGSPGFKVA+LGAAGGIGQPLAMLMK
Sbjct:     4 NQRIARISAHLNPPNLHNQIADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAMLMK 63

Query:    68 INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127
             +NPLVSVLHLYDV N PGVTADISHMDT+AVVRGFLGQ QLE+ALTGMD+VIIPAGVPRK
Sbjct:    64 MNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRK 123

Query:   128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
             PGMTRDDLFNINAGIV+TL E IAKCCPKAIVN+ISNPVNSTVPIAAEVFKK GT+DPK+
Sbjct:   124 PGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPKK 183

Query:   188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247
             L+GVTMLDVVRANTFVAEV+ LDPREV+VPVVGGHAGVTILPLLSQVKP CS T  EI+Y
Sbjct:   184 LMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEIEY 243

Query:   248 LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVS 305
             LTDRIQNGGTEVVEAK GAGSATLSMAYAA +FADACLRGLRGDA ++ECAYVAS V+
Sbjct:   244 LTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDANIVECAYVASHVT 301

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2144781 PMDH2 "peroxisomal NAD-malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
 Identities = 251/298 (84%), Positives = 275/298 (92%)

Query:     8 ANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK 67
             ANQRIARI+AHL P   Q+E ++S +GR +CRAKGG+PGFKVA+LGAAGGIGQ L++LMK
Sbjct:     7 ANQRIARISAHLTP---QMEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMK 63

Query:    68 INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK 127
             +NPLVS+LHLYDVVN PGVTAD+SHMDT AVVRGFLG +QLEDALTGMD+VIIPAG+PRK
Sbjct:    64 MNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRK 123

Query:   128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
             PGMTRDDLF INAGIVKTLCEG+AKCCP AIVNLISNPVNSTVPIAAEVFKK GTYDPK+
Sbjct:   124 PGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKK 183

Query:   188 LLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY 247
             LLGVT LDV RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKP  S TP EI+Y
Sbjct:   184 LLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEY 243

Query:   248 LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVS 305
             LT+RIQNGGTEVVEAK GAGSATLSMAYAAAKFADACLRGLRGDA V+EC++VAS V+
Sbjct:   244 LTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANVVECSFVASQVN 301

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0048046 "apoplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0042579 "microbody" evidence=ISS

TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 178/266 (66%), Positives = 206/266 (77%)

Query:    40 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV 99
             + G  P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V
Sbjct:    23 SSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEV 82

Query:   100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
              G++G   L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC  IAK CP A++
Sbjct:    83 VGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALI 142

Query:   160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV 219
             N+ISNPVNSTVPIAAE+FKK G YD K+L GVT LDVVRA TF A    +   EV+VPV+
Sbjct:   143 NMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRARTFYAGKANVPVAEVNVPVI 202

Query:   220 GGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 279
             GGHAGVTILPL SQ  P  +L+   +  LT R Q+GGTEVVEAK G GSATLSMAYA A 
Sbjct:   203 GGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAL 262

Query:   280 FADACLRGLRGDAGVIECAYVASTVS 305
             FADACL+GL G   VIEC+YV ST++
Sbjct:   263 FADACLKGLNGVPDVIECSYVQSTIT 288

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IMP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 175/261 (67%), Positives = 205/261 (78%)

Query:    45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG 104
             P  KV +LGAAGGIGQPL++LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G
Sbjct:    28 PDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMG 87

Query:   105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK L   IAK CP+A+VN+ISN
Sbjct:    88 DDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMISN 147

Query:   165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
             PVNSTVPIAAE+FKK GTYD K+L GVT LDVVRA TF A    ++  EV+VPVVGGHAG
Sbjct:   148 PVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVRARTFYAGKSDVNVAEVNVPVVGGHAG 207

Query:   225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
             +TILPL SQ  P  +L+   I  LT R Q+GGTEVVEAK G GSATLSMAYA A FADAC
Sbjct:   208 ITILPLFSQASPQANLSDDLIRALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADAC 267

Query:   285 LRGLRGDAGVIECAYVASTVS 305
             L+GL G   V+EC++V ST++
Sbjct:   268 LKGLNGVPNVVECSFVQSTIT 288

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IGI

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

TAIR|locus:2079177 MDH "malate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 172/259 (66%), Positives = 208/259 (80%)

Query:    47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ 106
             +KVAVLGAAGGIGQPL++L+K++PLVS LHLYD+ N  GV AD+SH +T + VR F G  
Sbjct:    83 YKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTGPS 142

Query:   107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
             +L D L  +++V+IPAGVPRKPGMTRDDLFNINA IVKTL E +A+ CP A +++ISNPV
Sbjct:   143 ELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISNPV 202

Query:   167 NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVT 226
             NSTVPIAAEV KK G YDPK+L GVT LDVVRANTFV++   L   +VDVPV+GGHAG+T
Sbjct:   203 NSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAGIT 262

Query:   227 ILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLR 286
             ILPLLS+ KPS + T  EI  LT RIQN GTEVV+AK GAGSATLSMAYAAA+F ++ LR
Sbjct:   263 ILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAKAGAGSATLSMAYAAARFVESSLR 322

Query:   287 GLRGDAGVIECAYVASTVS 305
              L GD  V EC++V ST++
Sbjct:   323 ALDGDGDVYECSFVESTLT 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

FB|FBgn0262559 Mdh2 "Malate dehydrogenase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 166/264 (62%), Positives = 205/264 (77%)

Query:    42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG 101
             G    +KV V GAAGGIGQPL++L+K NPLV+ L LYD+V+TPGV AD+SH+DT +   G
Sbjct:    20 GQQNNYKVTVCGAAGGIGQPLSLLLKQNPLVTDLALYDIVHTPGVAADLSHIDTKSKTAG 79

Query:   102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             F+G  QL D+L G D+V+IPAGVPRKPGMTRDDLFN+NAGI+K +   IAK CPKA+V +
Sbjct:    80 FIGADQLGDSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAGIIKDISNSIAKNCPKALVAI 139

Query:   162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
             I+NPVN+ VPIAAE+ KK G YDPKRL GV+ LDVVRA  F+   LG+DP+ V +PV+GG
Sbjct:   140 ITNPVNTCVPIAAEILKKAGVYDPKRLFGVSTLDVVRARAFIGHALGVDPQTVQIPVIGG 199

Query:   222 HAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFA 281
             H+GVTILP+LSQ +P        I+ LT RIQ  GTEVV+AK GAGSATLSMAYA A+FA
Sbjct:   200 HSGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAGTEVVKAKAGAGSATLSMAYAGARFA 259

Query:   282 DACLRGLRGDAGVIECAYVASTVS 305
              + L+GL G+  VIEC+YV STV+
Sbjct:   260 GSLLKGLNGEKNVIECSYVQSTVT 283

GO:0005739 "mitochondrion" evidence=IDA;TAS

GO:0030060 "L-malate dehydrogenase activity" evidence=ISS;TAS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035070 "salivary gland histolysis" evidence=IMP

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0035209 "pupal development" evidence=IMP

UNIPROTKB|F1PYG8 MDH2 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 160/255 (62%), Positives = 200/255 (78%)

Query:    48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
             KVAVLGA+GGIGQPLA+L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct:    26 KVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:   108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
             L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A++ +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTAACAQHCPEAMICVISNPVN 145

Query:   168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             ST+PIA EVFKK G YDP ++ GVT LD+VRANTF+AE+ GLDP  V+VPV+GGHAG TI
Sbjct:   146 STIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTFIAELKGLDPARVNVPVIGGHAGKTI 205

Query:   228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 287
             +PL+SQ  P   L   ++  +T RIQ  GTEVV+AK GAGSATLSMAYA A+F  + +  
Sbjct:   206 IPLISQCTPKVDLPQDQLTAVTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 265

Query:   288 LRGDAGVIECAYVAS 302
             + G  GV+EC++V S
Sbjct:   266 MNGKEGVVECSFVKS 280

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

WB|WBGene00003162 mdh-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 172/280 (61%), Positives = 211/280 (75%)

Query:    23 TLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 82
             TL     +SGL  +  R    +P  KVA+LGAAGGIGQPL +L+K +PLV+ L LYDVVN
Sbjct:     7 TLVQAAANSGLRAVSVRHSSQAP--KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVN 64

Query:    83 TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI 142
             TPGV AD+SH+D+NA V    G ++L  A+   D+++IPAGVPRKPGMTRDDLFN NAGI
Sbjct:    65 TPGVAADLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGI 124

Query:   143 VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTF 202
             V+ L   IAK  PKA++ +I+NPVNSTVPIA+EV KK G YDPKR+ GVT LDVVR+  F
Sbjct:   125 VRDLAAVIAKASPKALIAIITNPVNSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAF 184

Query:   203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEA 262
             V+E+ G D  +  VPVVGGHAG+TI+PLLSQVKPS   +  EI  LT RIQ+ GTEVV A
Sbjct:   185 VSELKGHDASKTVVPVVGGHAGITIIPLLSQVKPSTKFSEEEISKLTPRIQDAGTEVVNA 244

Query:   263 KTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
             K GAGSATLSMA A A+FA+A +RG++G+  V +CAYVAS
Sbjct:   245 KAGAGSATLSMALAGARFANALVRGIKGEKNV-QCAYVAS 283

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;ISS

GO:0006108 "malate metabolic process" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0005739 "mitochondrion" evidence=ISS;IDA

UNIPROTKB|E1BVT3 MDH2 "Malate dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 164/267 (61%), Positives = 202/267 (75%)

Query:    38 CR--AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT 95
             CR  A       KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T
Sbjct:    13 CRGLATSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET 72

Query:    96 NAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
              A V+GFLG +QL + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    AK CP
Sbjct:    73 RANVKGFLGPEQLPECLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTTACAKHCP 132

Query:   156 KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
             +A++ +ISNPVNST+PI +EVFKK G Y+P R+ GVT LD+VRANTFVAE+ GLDP  V 
Sbjct:   133 EAMICIISNPVNSTIPITSEVFKKHGVYNPNRIFGVTTLDIVRANTFVAELKGLDPARVS 192

Query:   216 VPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
             VPV+GGHAG TI+PL+SQ  P       +++ LT RIQ  GTEVV+AK GAGSATLSMAY
Sbjct:   193 VPVIGGHAGKTIIPLISQCTPKVDFPQDQLEKLTGRIQEAGTEVVKAKAGAGSATLSMAY 252

Query:   276 AAAKFADACLRGLRGDAGVIECAYVAS 302
             A A+F  + +  + G  GVIEC++V S
Sbjct:   253 AGARFVFSLVDAMNGKEGVIECSFVRS 279

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006475 "internal protein amino acid acetylation" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

UNIPROTKB|J9NY79 J9NY79 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 159/255 (62%), Positives = 200/255 (78%)

Query:    48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
             KVAVLGA+GGIGQPLA+L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct:    26 KVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:   108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
             L D L G D+V+IPAGVPRKPGMTR+DLFN NA IV TL    A+ CP+A++ +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRNDLFNTNASIVATLTAACAQHCPEAMICVISNPVN 145

Query:   168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             ST+PIA EVFKK G YDP ++ GVT LD+VRANTF+AE+ GLDP  V+VPV+GGHAG TI
Sbjct:   146 STIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTFIAELKGLDPARVNVPVIGGHAGKTI 205

Query:   228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 287
             +PL+SQ  P   L   ++  +T RIQ  GTEVV+AK GAGSATLSMAYA A+F  + +  
Sbjct:   206 IPLISQCTPKVDLPQDQLTAVTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 265

Query:   288 LRGDAGVIECAYVAS 302
             + G  GV+EC++V S
Sbjct:   266 MNGKEGVVECSFVKS 280

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43743	MDHG1_BRANA	1, ., 1, ., 1, ., 3, 7	0.8294	0.9770	0.8324	N/A	no
Q5NVR2	MDHM_PONAB	1, ., 1, ., 1, ., 3, 7	0.6196	0.8360	0.7544	yes	no
B1LGK2	MDH_ECOSM	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
C4ZSX4	MDH_ECOBW	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
Q42972	MDHG_ORYSJ	1, ., 1, ., 1, ., 3, 7	0.8333	0.9606	0.8230	yes	no
P08249	MDHM_MOUSE	1, ., 1, ., 1, ., 3, 7	0.6235	0.8360	0.7544	yes	no
Q31WA4	MDH_SHIBS	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
Q9ZP05	MDHG1_ARATH	1, ., 1, ., 1, ., 3, 7	0.8422	0.9672	0.8333	no	no
Q0TCN0	MDH_ECOL5	1, ., 1, ., 1, ., 3, 7	0.6171	0.8262	0.8076	yes	no
A8A545	MDH_ECOHS	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
B7UJW8	MDH_ECO27	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
Q1R6A3	MDH_ECOUT	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
P46488	MDHG_CUCSA	1, ., 1, ., 1, ., 3, 7	0.8712	0.9901	0.8483	N/A	no
Q32LG3	MDHM_BOVIN	1, ., 1, ., 1, ., 3, 7	0.6156	0.8360	0.7544	yes	no
A1AGC9	MDH_ECOK1	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
Q9XFW3	MDHG2_BRANA	1, ., 1, ., 1, ., 3, 7	0.8394	0.9770	0.8324	N/A	no
P61889	MDH_ECOLI	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	N/A	no
B7N0M1	MDH_ECO81	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
B2U1U9	MDH_SHIB3	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
P37228	MDHG_SOYBN	1, ., 1, ., 1, ., 3, 7	0.8382	0.9803	0.8470	yes	no
B7MBZ7	MDH_ECO45	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
O02640	MDHM_CAEEL	1, ., 1, ., 1, ., 3, 7	0.6142	0.9081	0.8123	yes	no
B7LHU4	MDH_ECO55	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
P40926	MDHM_HUMAN	1, ., 1, ., 1, ., 3, 7	0.6196	0.8360	0.7544	yes	no
B4T769	MDH_SALNS	1, ., 1, ., 1, ., 3, 7	0.6171	0.8262	0.8076	yes	no
A7ZSD0	MDH_ECO24	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
P04636	MDHM_RAT	1, ., 1, ., 1, ., 3, 7	0.6274	0.8360	0.7544	yes	no
Q0T052	MDH_SHIF8	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
B6I1V4	MDH_ECOSE	1, ., 1, ., 1, ., 3, 7	0.6093	0.8262	0.8076	yes	no
B1XHK9	MDH_ECODH	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
P19446	MDHG_CITLA	1, ., 1, ., 1, ., 3, 7	0.8745	0.9901	0.8483	N/A	no
P00346	MDHM_PIG	1, ., 1, ., 1, ., 3, 7	0.6196	0.8360	0.7544	yes	no
B7NKU9	MDH_ECO7I	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
Q3YX11	MDH_SHISS	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
O82399	MDHG2_ARATH	1, ., 1, ., 1, ., 3, 7	0.8489	0.9737	0.8389	yes	no
P61890	MDH_ECOL6	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
B5YSW2	MDH_ECO5E	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
P61891	MDH_ECO57	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	N/A	no
B1IQP3	MDH_ECOLC	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
Q83Q04	MDH_SHIFL	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no
B7M0U8	MDH_ECO8A	1, ., 1, ., 1, ., 3, 7	0.6132	0.8262	0.8076	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.983
3rd Layer	1.1.1.37	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00010647001	RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (356 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00003727001	RecName- Full=Citrate synthase; (472 aa)				•	•	•	•		0.956
	GSVIVG00017898001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (565 aa)						•	•		0.941
	GSVIVG00028048001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (470 aa)						•	•		0.929
	VVME2	RecName- Full=Malic enzyme; (591 aa)						•	•		0.905
	NADP-ME	RecName- Full=Malic enzyme; (496 aa)						•	•		0.905
	GSVIVG00016723001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (411 aa)						•	•		0.903
	GSVIVG00032723001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (410 aa)						•	•		0.903
	GSVIVG00032463001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (450 aa)						•	•		0.902
	GSVIVG00026767001	RecName- Full=Malic enzyme; (605 aa)						•	•		0.902
	GSVIVG00018984001	RecName- Full=Malic enzyme; (625 aa)						•	•		0.902

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	305
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	0.0
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	1e-179
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-136
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	1e-128
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	1e-121
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	3e-71
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	2e-55
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	2e-42
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	7e-42
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	2e-39
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	6e-39
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	8e-33
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	3e-29
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	1e-28
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	6e-26
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	1e-24
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	4e-20
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	6e-20
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	2e-16
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	4e-16
cd00704	323	cd00704, MDH, Malate dehydrogenase	1e-15
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	3e-15
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	1e-13
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	6e-13
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	2e-11
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	2e-11
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	6e-11
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	1e-09
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	4e-08
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	3e-07
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	8e-07

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  558 bits (1441), Expect = 0.0
 Identities = 212/276 (76%), Positives = 232/276 (84%)

Query: 29  ESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 88
                    CRAKGG+PGFKVAVLGAAGGIGQPL++LMK+NPLVS LHLYD+ NTPGV A
Sbjct: 1   SMEASSLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAA 60

Query: 89  DISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCE 148
           D+SH++T A VRGFLG  QL DAL G D+VIIPAGVPRKPGMTRDDLFNINAGIVKTLCE
Sbjct: 61  DVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCE 120

Query: 149 GIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG 208
            +AK CP A+VN+ISNPVNSTVPIAAEV KK G YDPK+L GVT LDVVRANTFVAE  G
Sbjct: 121 AVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKG 180

Query: 209 LDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGS 268
           LDP +VDVPVVGGHAG+TILPLLSQ  P  S T  EI+ LT RIQNGGTEVVEAK GAGS
Sbjct: 181 LDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGS 240

Query: 269 ATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTV 304
           ATLSMAYAAA+FADACLRGL G+A V+EC+YV S V
Sbjct: 241 ATLSMAYAAARFADACLRGLNGEADVVECSYVQSEV 276

Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  497 bits (1281), Expect = e-179
 Identities = 185/259 (71%), Positives = 219/259 (84%)

Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ 106
            KVAVLGAAGGIGQPL++L+K+NPLVS L LYD+VNTPGV AD+SH++T A V G+LG +
Sbjct: 1   VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPE 60

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
           +L+ AL G D+V+IPAGVPRKPGMTRDDLFNINAGIV+ L   +AK CPKA++ +ISNPV
Sbjct: 61  ELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVT 226
           NSTVPIAAEV KK G YDPKRL GVT LDVVRANTFVAE+LGLDP +V+VPV+GGH+GVT
Sbjct: 121 NSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVT 180

Query: 227 ILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLR 286
           ILPLLSQ +P  +    EI+ LT RIQ GG EVV+AK GAGSATLSMAYA A+FA++ LR
Sbjct: 181 ILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLR 240

Query: 287 GLRGDAGVIECAYVASTVS 305
           GL+G+ GVIECAYV S V+
Sbjct: 241 GLKGEKGVIECAYVESDVT 259

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  387 bits (995), Expect = e-136
 Identities = 164/255 (64%), Positives = 203/255 (79%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGAAGGIGQPL++L+K+ P VS L LYD+    GV AD+SH+ T A V+GF G++ 
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEG 60

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           LE+AL G D+V+IPAGVPRKPGMTRDDLFN+NAGIVK L   +A+ CPKA++ +I+NPVN
Sbjct: 61  LENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVN 120

Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
           STVPIAAEV KK G YDP +L GVT LD+VRANTFVAE+ G DP EV+VPV+GGH+G TI
Sbjct: 121 STVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETI 180

Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 287
           +PL+SQ       T  +++ L  RIQN GTEVV+AK GAGSATLSMA+A A+F  + +RG
Sbjct: 181 IPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240

Query: 288 LRGDAGVIECAYVAS 302
           L+G+ GV+ECAYV S
Sbjct: 241 LKGEEGVVECAYVES 255

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  367 bits (945), Expect = e-128
 Identities = 158/257 (61%), Positives = 188/257 (73%), Gaps = 4/257 (1%)

Query: 48  KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 105
           KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                AL G D+V+I AGV RKPGM R DLFN+NAGIVK L E +AK CPKA + +I+NP
Sbjct: 62  D-PTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           VN+TV IAAEV KK G YD  +L GVT LDV+R+ TFVAE+ G  P EV+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL 285
           TILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 286 RGLRGDAGVIECAYVAS 302
           R L+G+ GV+ECAYV  
Sbjct: 240 RALQGEQGVVECAYVEG 256

Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  350 bits (899), Expect = e-121
 Identities = 163/258 (63%), Positives = 200/258 (77%), Gaps = 2/258 (0%)

Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQ 106
           FKVAVLGAAGGIGQPL++L+K NP VS L LYD+V  PGV AD+SH+DT A V G+   +
Sbjct: 9   FKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGE 68

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
             E AL G D+V+I AGVPRKPGMTRDDLFN NA IV+ L   +A   PKAIV ++SNPV
Sbjct: 69  LWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVT 226
           NSTVPIAAE  KK G YDP++L GVT LDVVRA  FVAE LG++P +V+VPVVGGH+GVT
Sbjct: 129 NSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGVT 188

Query: 227 ILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLR 286
           I+PLLSQ     SL   +++ +T R+Q GG EVV+AK GAGSATLSMAYAAA+++ + L+
Sbjct: 189 IVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLK 246

Query: 287 GLRGDAGVIECAYVASTV 304
            LRGD G++ECA+V S +
Sbjct: 247 ALRGDKGIVECAFVESDM 264

Length = 321

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  222 bits (568), Expect = 3e-71
 Identities = 99/264 (37%), Positives = 138/264 (52%), Gaps = 21/264 (7%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           KVAV+GA G +G  LA L+ +  L S L L D+      GV  D+SH          +  
Sbjct: 2   KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG 60

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
               + L G DIV+I AGVPRKPGMTR DL   NA IVK + + IAK  P AIV +++NP
Sbjct: 61  DGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           V+    IA +           R++G  T+LD  R  TF+AE LG+ P++V   V+G H G
Sbjct: 121 VDILTYIAMKFSGF----PKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH-G 175

Query: 225 VTILPLLSQV----KPSCSL----TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 276
            T++PL SQ     KP   L    T  +++ L +R++N G E++EAK          A A
Sbjct: 176 DTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAKG--AGTYYGPAAA 233

Query: 277 AAKFADACLRGLRGDAGVIECAYV 300
            A+  +A LR  +    +    Y+
Sbjct: 234 LARMVEAILRDEK--RVLPVSVYL 255

Length = 313

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  176 bits (448), Expect = 2e-55
 Identities = 63/145 (43%), Positives = 80/145 (55%), Gaps = 6/145 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTNAVVRGFLGQ 105
           KVAV+GA GG+G  LA  + +  L   L L D+      GV  D+SH  T   V G +G 
Sbjct: 2   KVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGG 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
               +AL   D+V+I AGVPRKPGMTR DL N NAGI K +   IAK  P AIV ++SNP
Sbjct: 62  DD-YEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           V+    IA +V    G    + +  
Sbjct: 121 VDILTYIAWKVS---GLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  148 bits (375), Expect = 2e-42
 Identities = 87/250 (34%), Positives = 134/250 (53%), Gaps = 24/250 (9%)

Query: 49  VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHM----DTNAVVRGF 102
           ++++GA G +G  LA L+ +  L  V+ L D+V   P G   DIS       ++  V G 
Sbjct: 1   ISIIGA-GNVGATLAQLLALKELGDVV-LLDIVEGLPQGKALDISQAAPILGSDTKVTGT 58

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
              + +  +    D+V+I AG+PRKPGM+RDDL   NA IVK + E I K  P AIV ++
Sbjct: 59  NDYEDIAGS----DVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114

Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NP++        V  K   +   R++G+  +LD  R   F+AE LG+  ++V   V+GG
Sbjct: 115 TNPLDVMT----YVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGG 170

Query: 222 HAGVTILPLLSQ-----VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 276
           H G T++PL        +  +  +T  EID + +R +NGG E+V      GSA  + A A
Sbjct: 171 H-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAA 228

Query: 277 AAKFADACLR 286
            A+  +A L+
Sbjct: 229 IAEMVEAILK 238

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  146 bits (371), Expect = 7e-42
 Identities = 93/251 (37%), Positives = 140/251 (55%), Gaps = 24/251 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRGF--- 102
           K++++GA G +G  LA L+ +  L  V+ L+D+V   P G   DI+     A V GF   
Sbjct: 4   KISIIGA-GNVGATLAHLLALKELGDVV-LFDIVEGVPQGKALDIAEA---APVEGFDTK 58

Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             G    ED + G D+V+I AGVPRKPGM+RDDL  INA I+K + EGI K  P AIV +
Sbjct: 59  ITGTNDYED-IAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIV 117

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NPV++   +A     K   +   R++G+  +LD  R  TF+AE L +  ++V   V+G
Sbjct: 118 VTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLG 173

Query: 221 GHAGVTILPLLSQV----KPSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
           GH G +++PL+        P   L   E +D + +R + GG E+V      GSA  + A 
Sbjct: 174 GH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA 231

Query: 276 AAAKFADACLR 286
           + A+  +A L+
Sbjct: 232 SIAEMVEAILK 242

Length = 307

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  136 bits (344), Expect = 2e-39
 Identities = 61/123 (49%), Positives = 75/123 (60%), Gaps = 14/123 (11%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG----------VTILPLLSQVKPSCSLT 241
           T LD  RA TF+AE  G+DPR V+V V+G H+G          VTI+PL+SQVK +   T
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKDT 60

Query: 242 PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGD--AGVIECAY 299
             E++ L +R+QN G EV+EAK  AGS T SMAYAAA+ A A LRG  G    GV    Y
Sbjct: 61  DWELEELIERVQNAGYEVIEAK--AGSTTYSMAYAAARIAKAILRGTGGVLSVGVYLDGY 118

Query: 300 VAS 302
             S
Sbjct: 119 YGS 121

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  137 bits (347), Expect = 6e-39
 Identities = 66/207 (31%), Positives = 98/207 (47%), Gaps = 9/207 (4%)

Query: 49  VAVLGAAGGIGQPLA--MLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG 104
           +AV+GA G +G  LA  +      L   L LYD+      GV  D+              
Sbjct: 1   IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI 60

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                +A    D+VII AGV RKPGM R DL   N  IVK + + I K  P A + ++SN
Sbjct: 61  TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PV+    I   +  +      ++++G+  LD +R    +AE LG+DP +V V ++G H G
Sbjct: 121 PVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEHGG 176

Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDR 251
            + +P  S V+ + S+       L D 
Sbjct: 177 -SQVPDWSTVRIATSIADLIRSLLNDE 202

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  122 bits (309), Expect = 8e-33
 Identities = 84/265 (31%), Positives = 133/265 (50%), Gaps = 26/265 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISH-MDTNAVVRGFLG 104
           K++++GA G IG  +A+L+    L  V+ LYDV+   P G   D+ H           LG
Sbjct: 7   KISMIGA-GQIGSTVALLILQKNLGDVV-LYDVIKGVPQGKALDLKHFSTLVGSNINILG 64

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
               ED +   D+V+I AGV RK  MTR+DL  IN  I+K++ E + K CP A V  ++N
Sbjct: 65  TNNYED-IKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
           P++       +VF++       ++ G+  +LD  R    +AE LG+ P +V   V+GGH 
Sbjct: 124 PLD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH- 178

Query: 224 GVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           G  ++PL          LS      ++T  EI+ +  + +N G E+V+     GSA  + 
Sbjct: 179 GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKL-LKKGSAFFAP 237

Query: 274 AYAAAKFADACLRGLRGDAGVIECA 298
           A A     +A L+  +    V+ C+
Sbjct: 238 AAAIVAMIEAYLKDEK---RVLVCS 259

Length = 319

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  113 bits (284), Expect = 3e-29
 Identities = 91/270 (33%), Positives = 148/270 (54%), Gaps = 31/270 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVR-GFLG 104
           K++++G+ G IG  +A L+ +  L  V+ L+D+V N P G   DISH +  A      +G
Sbjct: 8   KISLIGS-GNIGGVMAYLIVLKNLGDVV-LFDIVKNIPQGKALDISHSNVIAGSNSKVIG 65

Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKAIV 159
               ED + G D+VI+ AG+ ++PG +     RDDL  +NA I+  + EGI K CP A V
Sbjct: 66  TNNYED-IAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFV 124

Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPV 218
            +I+NP++  V    ++ ++       ++ G+  +LD  R  T++AE LG++PR+V   V
Sbjct: 125 IVITNPLDVMV----KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASV 180

Query: 219 VGGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGS 268
           +G H G  ++PL          LS+      +T  EID + +R +N G E+V+   G GS
Sbjct: 181 IGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDL-LGTGS 238

Query: 269 ATLSMAYAAAKFADACLRGLRGDAGVIECA 298
           A  + A AA + A+A L+  +    V+ C+
Sbjct: 239 AYFAPAAAAIEMAEAYLKDKK---RVLPCS 265

Length = 321

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  111 bits (279), Expect = 1e-28
 Identities = 76/252 (30%), Positives = 118/252 (46%), Gaps = 20/252 (7%)

Query: 49  VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQ 106
           + ++GA G +G  +A  +    L S L L DV      G   D+SH          +   
Sbjct: 1   ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGG 59

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
              DA    DIV+I AG PRKPG TR DL N NA I++++   + K  P AI+ ++SNPV
Sbjct: 60  DYADA-ADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV 118

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           +    I   V +K+      R++G  T+LD  R  + +AE L +DP+ V   V+G H G 
Sbjct: 119 D----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGEH-GD 173

Query: 226 TILPLLSQV----KPSCSLTPT---EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 278
           + +   S       P   L P    +++ + + ++  G E++  K   G+    +A A A
Sbjct: 174 SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLK---GATNYGIATAIA 230

Query: 279 KFADACLRGLRG 290
               + L   R 
Sbjct: 231 DIVKSILLDERR 242

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score =  104 bits (260), Expect = 6e-26
 Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 43/243 (17%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHL-----------------YDVVNTPGVTADI 90
           KV+++GA+G +G   A+L+    +V  ++L                 YD +   G+ A+I
Sbjct: 2   KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61

Query: 91  SHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI 150
                 + V              G DIVII AGVPRK GM+R DL   NA IVK   + I
Sbjct: 62  KISSDLSDV-------------AGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI 108

Query: 151 AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGL 209
           A+  P   + +++NPV+     A     K   +D  R+ G+ T LD +R    +A+   +
Sbjct: 109 AEFAPDTKILVVTNPVDVMTYKAL----KESGFDKNRVFGLGTHLDSLRFKVAIAKHFNV 164

Query: 210 DPREVDVPVVGGHAGVTILPLLSQVK----PSCSLTPTE---IDYLTDRIQNGGTEVVEA 262
              EV   ++G H G +++PL+S       P       +   ++ + + ++N G  ++  
Sbjct: 165 HISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL 223

Query: 263 KTG 265
           K G
Sbjct: 224 KGG 226

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score =  100 bits (250), Expect = 1e-24
 Identities = 77/251 (30%), Positives = 129/251 (51%), Gaps = 24/251 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGF--- 102
           K++V+GA G +G   A  +    L  ++ L DVV     G   D   M   + V GF   
Sbjct: 3   KISVIGA-GFVGATTAFRLAEKELADLV-LLDVVEGIPQGKALD---MYEASPVGGFDTK 57

Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             G     D     DIV+I AG+PRKPGM+R+DL ++NAGIV+ +   I +  P  I+ +
Sbjct: 58  VTGTNNYADT-ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVV 116

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNP+++   +A +       +  +R++G   +LD  R  TF+A  LG+  ++V   V+G
Sbjct: 117 VSNPLDAMTYVAWQ----KSGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLG 172

Query: 221 GHAGVTILPL-----LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
           GH G  ++PL     ++ +  +  ++   I  + +R + GG E+V      GSA  + A 
Sbjct: 173 GH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNL-LKQGSAYYAPAA 230

Query: 276 AAAKFADACLR 286
           +  +  +A L+
Sbjct: 231 SVVEMVEAILK 241

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 88.3 bits (220), Expect = 4e-20
 Identities = 74/259 (28%), Positives = 113/259 (43%), Gaps = 37/259 (14%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISHM--DTNAVVRGF 102
           KV ++GA G +G   A  +    +   L L D+ N         D+        + V+  
Sbjct: 2   KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDI-NEEKAEGEALDLEDALAFLPSPVKIK 59

Query: 103 LGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
            G     +DA    DIV+I AG P+KPG TR DL   NA I+K++   I       I  +
Sbjct: 60  AGDYSDCKDA----DIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLV 115

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            SNPV+    +   V +K+      R++G  T LD  R    +AE L +DPR V   V+G
Sbjct: 116 ASNPVD----VITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLG 171

Query: 221 GH-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAG 267
            H              G  +L LL + K    L+  ++D + + ++  G E++  K   G
Sbjct: 172 EHGDSQFVAWSTVTVGGKPLLDLLKEGK----LSELDLDEIEEDVRKAGYEIINGK---G 224

Query: 268 SATLSMAYAAAKFADACLR 286
           +    +A A A+   A L 
Sbjct: 225 ATYYGIATALARIVKAILN 243

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 87.3 bits (217), Expect = 6e-20
 Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 18/189 (9%)

Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
               D+V+I AG P+KPG TR +L   N  I+K++   + K     I  + +NPV+    
Sbjct: 62  CKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---- 117

Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-------- 222
           I   V  K+  +   R++G  T+LD  R    +AE LG+DP+ V   ++G H        
Sbjct: 118 ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEHGDSEVPVW 177

Query: 223 --AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKF 280
             A +  +PLL  +K   + T  +++ +   +++   E++  K   G+    +  A A+ 
Sbjct: 178 SSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRK---GATYYGIGMAVARI 234

Query: 281 ADACLRGLR 289
            +A L    
Sbjct: 235 VEAILHDEN 243

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 77.5 bits (192), Expect = 2e-16
 Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 16/181 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISH-MDTNAVVRGFL 103
           KVA++GA G +G   A  + +  L S + L D+ N         D++H       VR + 
Sbjct: 2   KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDI-NKAKAEGEAMDLAHGTPFVKPVRIYA 59

Query: 104 GQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
           G     + A    D+V+I AG  +KPG TR DL   N  I K +   I K  P AI+ ++
Sbjct: 60  GDYADCKGA----DVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV 115

Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NPV+    +   V  K+    P R++G  T+LD  R    + E LG+DPR V   ++G 
Sbjct: 116 TNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGE 171

Query: 222 H 222
           H
Sbjct: 172 H 172

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 77.0 bits (190), Expect = 4e-16
 Identities = 72/252 (28%), Positives = 111/252 (44%), Gaps = 31/252 (12%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN 96
           +VAV GAAG IG  L        +  K  P+V  LHL D+        GV  ++   D  
Sbjct: 5   RVAVTGAAGQIGYSLLFRIASGELFGKDQPVV--LHLLDIPPAMKALEGVAMEL--EDCA 60

Query: 97  -AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
             ++ G +     E+A   +D  ++    PRKPGM R DL + N  I K   + + K   
Sbjct: 61  FPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120

Query: 156 KAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 214
           K + V ++ NP N+   IA++    +    PK    +T LD  RA   +A   G+   +V
Sbjct: 121 KDVKVLVVGNPANTNALIASKNAPDI---PPKNFSAMTRLDHNRAKYQLAAKAGVPVSDV 177

Query: 215 DVPVVGGHAGVTILPLLSQ----VKPSCSLTPTEIDYL----TDRIQNGGTEVVEAKTGA 266
              ++ G+   T +P  +      +P   +   +  +L       +Q  G  V+EA+ GA
Sbjct: 178 KNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKDD-KWLEGEFIPTVQQRGAAVIEAR-GA 235

Query: 267 GSATLSMAYAAA 278
            SA  S A AA 
Sbjct: 236 SSA-ASAANAAI 246

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 71/259 (27%), Positives = 104/259 (40%), Gaps = 42/259 (16%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV-- 98
            V + GAAG IG  L        +     P++  LHL D+         +  ++   +  
Sbjct: 2   HVLITGAAGQIGYNLLFLIASGELFGDDQPVI--LHLLDI------PPAMKALEGVVMEL 53

Query: 99  -------VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA 151
                  ++G +     E+A   +D+ I+    PRKPGM R DL   NA I K   E + 
Sbjct: 54  QDCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALN 113

Query: 152 KCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLD 210
           K   P   V ++ NP N+   IA    K      PK    +T LD  RA   VA  LG+ 
Sbjct: 114 KVAKPTVKVLVVGNPANTNALIAL---KNAPNLPPKNFTALTRLDHNRAKAQVARKLGVR 170

Query: 211 PREV-DVPVVGGHAGVTILPLLSQVK----PSCSLTPTEIDY------LTDRIQNGGTEV 259
             +V +V + G H+  T +P LS                +D           +Q  G  +
Sbjct: 171 VSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAI 229

Query: 260 VEAKTGAGSATLSMAYAAA 278
           ++ + GA SA  S A A A
Sbjct: 230 IKKR-GASSA-ASAAKAIA 246

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 12/144 (8%)

Query: 110 DALTGMDIVIIPAGVPRKPGMT--RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           D     DI++I AG    PG T  R DL   NA I++ +   I K   +A++ LI+NP++
Sbjct: 64  DDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLD 123

Query: 168 STVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVT 226
             V IAA  F     Y   +++G  TMLD  R    VA+  G+DP+ V   V+G H G  
Sbjct: 124 IAVYIAATEFD----YPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEH-GSH 178

Query: 227 ILPLLSQVKPSCSLTPTEIDYLTD 250
             P+ S V    ++    +D L  
Sbjct: 179 AFPVWSLV----NIAGLPLDELEA 198

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 69.5 bits (171), Expect = 1e-13
 Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 16/174 (9%)

Query: 114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA 173
             D+V+I AG P+KPG TR DL   N  I K++   +       I  + SNPV+    I 
Sbjct: 73  DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD----IL 128

Query: 174 AEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH---------- 222
                K+  +  +R++G  T LD  R    ++E L +DPR V   ++G H          
Sbjct: 129 TYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGEHGDTEFPVWSH 188

Query: 223 AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 276
           A V  +PL   ++ +      ++D + + +++   E++E K GA    ++MA A
Sbjct: 189 ANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK-GATYYGIAMALA 241

Length = 315

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 67.6 bits (166), Expect = 6e-13
 Identities = 68/266 (25%), Positives = 107/266 (40%), Gaps = 35/266 (13%)

Query: 44  SPGFKVAVLGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVR 100
            P  KV V+G    G+   +++L K   L   L L DVV     G   D+ H        
Sbjct: 1   KPRNKVTVVGVGQVGMACAISILAK--GLADELVLVDVVEDKLKGEAMDLQH------GS 52

Query: 101 GFLGQQQLE-----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
            FL   ++E            +VI+ AG  +  G +R DL   N  I K +   + K  P
Sbjct: 53  AFLKNPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSP 112

Query: 156 KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREV 214
            AI+ ++SNPV+    I   V  K+      R++G    LD  R    +AE LG+ P  V
Sbjct: 113 NAILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSV 168

Query: 215 DVPVVGGH--------AGVTI--LPLLSQVK-PSCSLTPTEIDYLTDRIQNGGTEVVEAK 263
              ++G H        +GV +  + L            P +   +  ++ +   EV++ K
Sbjct: 169 HGWIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLK 228

Query: 264 TGAGSATLSMAYAAAKFADACLRGLR 289
              G  + ++  + A   DA LR   
Sbjct: 229 ---GYTSWAIGLSVADLVDAILRNTG 251

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 72/258 (27%), Positives = 106/258 (41%), Gaps = 37/258 (14%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISH--MDTN-A 97
           +V V GAAG IG  L        ML K  P++  LHL D+     V   +    MD    
Sbjct: 1   RVVVTGAAGQIGYALLPMIARGRMLGKDQPII--LHLLDIPPAMKVLEGVVMELMDCAFP 58

Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
           ++ G +       A T +D+ I+    PRK GM R DL + N  I K     + K   K 
Sbjct: 59  LLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKD 118

Query: 158 I-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-D 215
             V ++ NP N+   + +     +    PK    +T LD  RA   VAE  G+   +V +
Sbjct: 119 CKVLVVGNPANTNALVLSNYAPSI---PPKNFSALTRLDHNRALAQVAERAGVPVSDVKN 175

Query: 216 VPVVGGHAGVTILPLLSQ--VKPSCSLTPTEIDYLTDR----------IQNGGTEVVEAK 263
           V + G H+  T  P ++   V       P   + + D           +Q  G  ++ A+
Sbjct: 176 VIIWGNHSS-TQYPDVNHATVTKGGKQKPVR-EAIKDDAYLDGEFITTVQQRGAAIIRAR 233

Query: 264 TGAGSATLSMAYAAAKFA 281
                  LS A +AAK A
Sbjct: 234 ------KLSSALSAAKAA 245

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 8/137 (5%)

Query: 101 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI---AKCCPKA 157
           G +   +LE+A   +D   + A VP KPG  R DL   N  I K   E +   AK   K 
Sbjct: 47  GTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKV 106

Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 217
           +V  I NPVN+   +A     K+     +    + MLD  RA + +A  L +    +   
Sbjct: 107 LV--IGNPVNTNCLVAMLHAPKL---SAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHV 161

Query: 218 VVGGHAGVTILPLLSQV 234
           VV G+   +++  L+  
Sbjct: 162 VVWGNHAESMVADLTHA 178

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 67/260 (25%), Positives = 107/260 (41%), Gaps = 45/260 (17%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP------GVTADISHMD 94
           +V V GAAG I   L        +     P++  LHL D+   P      GV  ++   D
Sbjct: 4   RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVI--LHLLDI--PPALKALEGVVMEL--QD 57

Query: 95  TN-AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC 153
               +++  +     E+A   +D+ I+   +PRK GM R DL   N  I K   E + K 
Sbjct: 58  CAFPLLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKY 117

Query: 154 CPKAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKR-LLGVTMLDVVRANTFVAEVLGLDP 211
             K + V ++ NP N+   I  +    +    PK     +T LD  RA + +A  LG+  
Sbjct: 118 AKKNVKVLVVGNPANTNALILLKYAPSI----PKENFTALTRLDHNRAKSQIALKLGVPV 173

Query: 212 REV-DVPVVGGHAGVTILPLLSQVKPSCSLTPTEI-------DYLTD----RIQNGGTEV 259
            +V +V + G H+  T  P ++      +              +L       +Q  G  V
Sbjct: 174 SDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAV 232

Query: 260 VEAKTGAGSATLSMAYAAAK 279
           ++A+       LS A +AAK
Sbjct: 233 IKAR------KLSSAMSAAK 246

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 65/263 (24%), Positives = 115/263 (43%), Gaps = 37/263 (14%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTNAVVRGFLGQ 105
           KV+V+G  G +G  +A  +    L   L L DV      G   D+ H         FL +
Sbjct: 39  KVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQH------AAAFLPR 91

Query: 106 QQL----EDALT-GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
            ++    + A+T G D+ I+ AG  + PG +R +L   N  + + +   +AK  P  I+ 
Sbjct: 92  TKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
           ++SNPV+    +   V  K+  +   R++G  T LD  R    +A+ L ++ ++V   +V
Sbjct: 152 IVSNPVD----VLTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIV 207

Query: 220 GGH-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA 266
           G H              GV +L  L   K   +     ++ +   + +   EV++ K   
Sbjct: 208 GEHGDSSVALWSSVSVGGVPVLSFLE--KQQIAYEKETLEEIHRAVVDSAYEVIKLK--- 262

Query: 267 GSATLSMAYAAAKFADACLRGLR 289
           G  + ++ Y+ A    + LR  R
Sbjct: 263 GYTSWAIGYSVASLVRSLLRDQR 285

Length = 350

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 61/252 (24%), Positives = 95/252 (37%), Gaps = 31/252 (12%)

Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN 96
           +VAV GAAG IG  L        M     P++  L L ++        GV  ++   +  
Sbjct: 4   RVAVTGAAGQIGYSLLFRIASGEMFGPDQPVI--LQLLELPQALKALEGVAMEL---EDC 58

Query: 97  A--VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-C 153
           A  ++   +       A    D  ++    PR PGM R DL   N  I     + +    
Sbjct: 59  AFPLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVA 118

Query: 154 CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRE 213
                V ++ NP N+   IA +    +    P     +T LD  RA + +A+  G+   +
Sbjct: 119 SRDVKVLVVGNPCNTNALIAMKNAPDI---PPDNFTAMTRLDHNRAKSQLAKKAGVPVTD 175

Query: 214 VDVPVVGGHAGVTILPLLSQVKPSCSLTPTEI-------DYLTDRIQNGGTEVVEAKTGA 266
           V   V+ G+   T  P  +            I       D     +Q  G  +++A+ GA
Sbjct: 176 VKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR-GA 234

Query: 267 GSATLSMAYAAA 278
            SA  S A AA 
Sbjct: 235 SSAA-SAANAAI 245

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKA 157
           ++G +    + +A  G++I ++  G PRK GM R D+ + N  I K+    + K   P  
Sbjct: 43  LKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDC 102

Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-DV 216
            V +++NP N+   I  E    +     K +  +T LD  RA   ++E LG+   +V +V
Sbjct: 103 KVLVVANPANTNALILKEFAPSI---PEKNITCLTRLDHNRALGQISERLGVPVSDVKNV 159

Query: 217 PVVGGHA 223
            + G H+
Sbjct: 160 IIWGNHS 166

Length = 309

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score = 49.4 bits (119), Expect = 8e-07
 Identities = 66/257 (25%), Positives = 102/257 (39%), Gaps = 43/257 (16%)

Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV- 99
           +VAV GAAG IG  L        ML K  P++  L L ++   P + A         VV 
Sbjct: 6   RVAVTGAAGQIGYSLLFRIASGDMLGKDQPVI--LQLLEI--PPALKA------LEGVVM 55

Query: 100 ----------RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEG 149
                      G +       A    D+ ++    PR PGM R DL   N  I     + 
Sbjct: 56  ELDDCAFPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKA 115

Query: 150 IAKCCPKAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLG 208
           + +   + + V ++ NP N+   IA +    +     +    +T LD  RA + +A   G
Sbjct: 116 LNEVAARDVKVLVVGNPANTNALIAMKNAPDL---PAENFTAMTRLDHNRALSQLAAKAG 172

Query: 209 LDPREVDVPVVGGHAGVTILPLLSQV----KPSCSLTPTEIDYLTD----RIQNGGTEVV 260
           +   ++    V G+   T  P         KP+  +   +  +L D     +Q  G  ++
Sbjct: 173 VPVADIKKMTVWGNHSATQYPDFRHATIDGKPAAEVINDQ-AWLEDTFIPTVQKRGAAII 231

Query: 261 EAKTGAGSATLSMAYAA 277
           EA+ GA SA  S A AA
Sbjct: 232 EAR-GASSAA-SAANAA 246

Length = 326

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
PLN00106	323	malate dehydrogenase	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
PLN02602	350	lactate dehydrogenase	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
PLN00135	309	malate dehydrogenase	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
KOG1496	332	consensus Malate dehydrogenase [Energy production	100.0
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	100.0
PRK15076	431	alpha-galactosidase; Provisional	99.93
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	99.93
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	99.91
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.87
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	99.87
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.84
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.79
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.76
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.0
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.98
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	98.93
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.84
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.83
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.8
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.73
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.71
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.71
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.7
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.66
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.66
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.64
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	98.57
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	98.57
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.56
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.56
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.55
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.5
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.49
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.47
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.46
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	98.43
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.42
PLN02166	436	dTDP-glucose 4,6-dehydratase	98.4
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.39
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	98.36
PLN02427	386	UDP-apiose/xylose synthase	98.36
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.36
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.34
PLN02650	351	dihydroflavonol-4-reductase	98.32
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	98.3
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	98.29
PLN00198	338	anthocyanidin reductase; Provisional	98.27
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.26
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.25
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	98.22
PLN02206	442	UDP-glucuronate decarboxylase	98.21
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.21
PLN02695	370	GDP-D-mannose-3',5'-epimerase	98.2
PLN02214	342	cinnamoyl-CoA reductase	98.15
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	98.13
CHL00194	317	ycf39 Ycf39; Provisional	98.13
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.12
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	98.12
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	98.12
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.12
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	98.11
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.08
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	98.07
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.06
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	98.05
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.04
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	98.02
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	98.01
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	97.99
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	97.98
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.98
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.97
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.97
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.95
PRK10675	338	UDP-galactose-4-epimerase; Provisional	97.95
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	97.94
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.94
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	97.93
PLN02896	353	cinnamyl-alcohol dehydrogenase	97.93
PLN02778	298	3,5-epimerase/4-reductase	97.92
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.92
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.91
PLN02583	297	cinnamoyl-CoA reductase	97.9
PLN02572	442	UDP-sulfoquinovose synthase	97.9
PLN03209	576	translocon at the inner envelope of chloroplast su	97.9
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	97.89
PLN02653	340	GDP-mannose 4,6-dehydratase	97.88
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.87
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	97.84
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.84
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.83
PLN02240	352	UDP-glucose 4-epimerase	97.83
PRK07201	657	short chain dehydrogenase; Provisional	97.8
PLN02260	668	probable rhamnose biosynthetic enzyme	97.8
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	97.79
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.78
PRK06194	287	hypothetical protein; Provisional	97.78
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	97.77
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.76
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.75
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.74
PRK07417	279	arogenate dehydrogenase; Reviewed	97.71
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	97.71
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	97.7
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	97.68
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.66
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	97.65
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	97.63
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	97.61
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.6
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.59
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	97.59
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.58
PRK07680	273	late competence protein ComER; Validated	97.58
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.56
PLN02686	367	cinnamoyl-CoA reductase	97.56
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	97.56
PLN02253	280	xanthoxin dehydrogenase	97.56
PRK05865	854	hypothetical protein; Provisional	97.55
PRK08643	256	acetoin reductase; Validated	97.52
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.51
PLN02688	266	pyrroline-5-carboxylate reductase	97.51
PRK08655	437	prephenate dehydrogenase; Provisional	97.48
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.48
PRK07326	237	short chain dehydrogenase; Provisional	97.47
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.46
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.46
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.44
PRK06545	359	prephenate dehydrogenase; Validated	97.44
PRK12829	264	short chain dehydrogenase; Provisional	97.44
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.44
PRK12320	699	hypothetical protein; Provisional	97.44
TIGR01746	367	Thioester-redct thioester reductase domain. It has	97.43
PRK08267	260	short chain dehydrogenase; Provisional	97.43
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.43
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	97.42
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.42
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.39
PRK07102	243	short chain dehydrogenase; Provisional	97.38
PRK05866	293	short chain dehydrogenase; Provisional	97.37
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.37
PRK07806	248	short chain dehydrogenase; Provisional	97.37
PRK12828	239	short chain dehydrogenase; Provisional	97.36
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.35
PRK12937	245	short chain dehydrogenase; Provisional	97.33
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.33
PRK07067	257	sorbitol dehydrogenase; Provisional	97.33
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	97.33
PLN02256	304	arogenate dehydrogenase	97.33
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.31
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	97.3
COG2910	211	Putative NADH-flavin reductase [General function p	97.29
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.28
PRK06138	252	short chain dehydrogenase; Provisional	97.28
PRK14982	340	acyl-ACP reductase; Provisional	97.27
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.27
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	97.26
PLN02996	491	fatty acyl-CoA reductase	97.26
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.26
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.26
PRK06182	273	short chain dehydrogenase; Validated	97.24
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.24
PRK07985	294	oxidoreductase; Provisional	97.24
PRK08507	275	prephenate dehydrogenase; Validated	97.24
PLN02712	667	arogenate dehydrogenase	97.24
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	97.24
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	97.24
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.23
PRK08278	273	short chain dehydrogenase; Provisional	97.23
PRK05717	255	oxidoreductase; Validated	97.23
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.22
PRK07069	251	short chain dehydrogenase; Validated	97.22
PRK05875	276	short chain dehydrogenase; Provisional	97.21
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.2
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	97.2
PRK06914	280	short chain dehydrogenase; Provisional	97.2
PRK12480	330	D-lactate dehydrogenase; Provisional	97.2
PRK07890	258	short chain dehydrogenase; Provisional	97.19
PRK06180	277	short chain dehydrogenase; Provisional	97.18
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.17
PRK06197	306	short chain dehydrogenase; Provisional	97.17
PRK07774	250	short chain dehydrogenase; Provisional	97.17
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.17
PRK09135	249	pteridine reductase; Provisional	97.17
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	97.17
PLN00016	378	RNA-binding protein; Provisional	97.15
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	97.15
PRK12939	250	short chain dehydrogenase; Provisional	97.14
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.14
PRK06924	251	short chain dehydrogenase; Provisional	97.13
PRK06172	253	short chain dehydrogenase; Provisional	97.12
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.12
PRK08818	370	prephenate dehydrogenase; Provisional	97.12
PRK07856	252	short chain dehydrogenase; Provisional	97.12
PRK07576	264	short chain dehydrogenase; Provisional	97.12
PRK07814	263	short chain dehydrogenase; Provisional	97.12
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.11
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.11
PRK06179	270	short chain dehydrogenase; Provisional	97.11
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.1
PRK07024	257	short chain dehydrogenase; Provisional	97.1
PRK10538	248	malonic semialdehyde reductase; Provisional	97.1
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.1
PRK12367	245	short chain dehydrogenase; Provisional	97.1
PRK06482	276	short chain dehydrogenase; Provisional	97.1
PRK07478	254	short chain dehydrogenase; Provisional	97.1
PRK05650	270	short chain dehydrogenase; Provisional	97.09
PRK08251	248	short chain dehydrogenase; Provisional	97.08
PRK12827	249	short chain dehydrogenase; Provisional	97.07
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.07
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.07
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	97.07
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	97.06
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.06
PRK08263	275	short chain dehydrogenase; Provisional	97.03
PRK06841	255	short chain dehydrogenase; Provisional	97.03
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	97.03
PRK05993	277	short chain dehydrogenase; Provisional	97.02
PRK07904	253	short chain dehydrogenase; Provisional	97.02
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.01
PRK05854	313	short chain dehydrogenase; Provisional	97.01
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.0
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	96.99
PRK13243	333	glyoxylate reductase; Reviewed	96.98
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.98
PRK07832	272	short chain dehydrogenase; Provisional	96.98
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.98
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.97
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.97
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.96
PRK07453	322	protochlorophyllide oxidoreductase; Validated	96.96
PRK09291	257	short chain dehydrogenase; Provisional	96.96
PRK05876	275	short chain dehydrogenase; Provisional	96.94
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.94
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.94
PRK07454	241	short chain dehydrogenase; Provisional	96.93
PRK09186	256	flagellin modification protein A; Provisional	96.92
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.91
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.91
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.9
PRK06181	263	short chain dehydrogenase; Provisional	96.9
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.89
PRK06523	260	short chain dehydrogenase; Provisional	96.89
PRK07574	385	formate dehydrogenase; Provisional	96.88
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.88
PRK08264	238	short chain dehydrogenase; Validated	96.88
PRK09072	263	short chain dehydrogenase; Provisional	96.88
PRK06398	258	aldose dehydrogenase; Validated	96.88
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.88
PRK06057	255	short chain dehydrogenase; Provisional	96.88
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.87
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	96.87
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.86
PRK12746	254	short chain dehydrogenase; Provisional	96.86
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.85
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.85
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	96.85
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	96.84
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.84
PRK07063	260	short chain dehydrogenase; Provisional	96.84
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	96.84
PRK07074	257	short chain dehydrogenase; Provisional	96.83
PRK06128	300	oxidoreductase; Provisional	96.83
PRK12935	247	acetoacetyl-CoA reductase; Provisional	96.83
PRK15059	292	tartronate semialdehyde reductase; Provisional	96.83
PRK08339	263	short chain dehydrogenase; Provisional	96.83
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.83
PRK06701	290	short chain dehydrogenase; Provisional	96.82
PRK06196	315	oxidoreductase; Provisional	96.82
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.82
PRK06500	249	short chain dehydrogenase; Provisional	96.82
PRK08219	227	short chain dehydrogenase; Provisional	96.82
PLN02780	320	ketoreductase/ oxidoreductase	96.81
PRK09242	257	tropinone reductase; Provisional	96.81
PRK08265	261	short chain dehydrogenase; Provisional	96.81
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	96.81
PRK07062	265	short chain dehydrogenase; Provisional	96.81
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.79
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	96.79
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.79
PRK07825	273	short chain dehydrogenase; Provisional	96.78
PRK07097	265	gluconate 5-dehydrogenase; Provisional	96.78
PRK06101	240	short chain dehydrogenase; Provisional	96.78
PRK08226	263	short chain dehydrogenase; Provisional	96.77
PRK05867	253	short chain dehydrogenase; Provisional	96.77
PRK07577	234	short chain dehydrogenase; Provisional	96.76
PLN02260	668	probable rhamnose biosynthetic enzyme	96.76
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.76
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	96.76
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.75
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	96.75
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.74
PLN02494	477	adenosylhomocysteinase	96.74
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.73
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	96.73
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.73
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.72
PLN02712	667	arogenate dehydrogenase	96.72
PRK07035	252	short chain dehydrogenase; Provisional	96.7
PRK08605	332	D-lactate dehydrogenase; Validated	96.7
PRK06139	330	short chain dehydrogenase; Provisional	96.69
PRK05884	223	short chain dehydrogenase; Provisional	96.69
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.68
PLN03139	386	formate dehydrogenase; Provisional	96.68
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.68
PRK09134	258	short chain dehydrogenase; Provisional	96.67
PRK12743	256	oxidoreductase; Provisional	96.67
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.66
PRK08628	258	short chain dehydrogenase; Provisional	96.66
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.66
PRK06198	260	short chain dehydrogenase; Provisional	96.66
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.65
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.65
PRK12824	245	acetoacetyl-CoA reductase; Provisional	96.65
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.64
PRK05855	582	short chain dehydrogenase; Validated	96.64
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.64
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.63
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.62
PRK07060	245	short chain dehydrogenase; Provisional	96.62
PRK06949	258	short chain dehydrogenase; Provisional	96.62
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.61
PRK06114	254	short chain dehydrogenase; Provisional	96.61
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.6
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.6
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.6
PRK07677	252	short chain dehydrogenase; Provisional	96.59
PRK12744	257	short chain dehydrogenase; Provisional	96.59
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.56
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.55
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.54
PRK07109	334	short chain dehydrogenase; Provisional	96.53
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.53
PRK05693	274	short chain dehydrogenase; Provisional	96.53
PRK12742	237	oxidoreductase; Provisional	96.52
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.52
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.51
PRK09009	235	C factor cell-cell signaling protein; Provisional	96.51
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	96.51
PRK08589	272	short chain dehydrogenase; Validated	96.51
PRK06947	248	glucose-1-dehydrogenase; Provisional	96.5
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.5
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	96.5
PRK05872	296	short chain dehydrogenase; Provisional	96.5
PLN02928	347	oxidoreductase family protein	96.49
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	96.44
PRK08936	261	glucose-1-dehydrogenase; Provisional	96.42
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.42
PRK07023	243	short chain dehydrogenase; Provisional	96.41
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.41
PRK07775	274	short chain dehydrogenase; Provisional	96.4
PLN02383	344	aspartate semialdehyde dehydrogenase	96.4
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	96.39
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.39
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.38
PRK08324	681	short chain dehydrogenase; Validated	96.38
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.37
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.36
PRK08703	239	short chain dehydrogenase; Provisional	96.36
PLN02503	605	fatty acyl-CoA reductase 2	96.34
PRK06125	259	short chain dehydrogenase; Provisional	96.34
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.32
PRK08177	225	short chain dehydrogenase; Provisional	96.31
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	96.3
PRK12747	252	short chain dehydrogenase; Provisional	96.3
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.26
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.24
PRK06953	222	short chain dehydrogenase; Provisional	96.24
PRK06123	248	short chain dehydrogenase; Provisional	96.21
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.2
PRK07578	199	short chain dehydrogenase; Provisional	96.2
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.2
PRK08862	227	short chain dehydrogenase; Provisional	96.2
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.19
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.17
PRK07831	262	short chain dehydrogenase; Provisional	96.16
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.16
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.16
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.15
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.15
PRK12938	246	acetyacetyl-CoA reductase; Provisional	96.15
PRK07201	657	short chain dehydrogenase; Provisional	96.13
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.11
PRK06940	275	short chain dehydrogenase; Provisional	96.11
PRK08618	325	ornithine cyclodeaminase; Validated	96.11
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	96.1
PRK08291	330	ectoine utilization protein EutC; Validated	96.09
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.06
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.05
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.04
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	96.03
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	96.02
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.01
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.0
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	96.0
PRK08017	256	oxidoreductase; Provisional	95.99
PRK06407	301	ornithine cyclodeaminase; Provisional	95.96
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.96
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.96
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	95.94
PRK06483	236	dihydromonapterin reductase; Provisional	95.94
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	95.93
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.92
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	95.92
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.9
PRK07340	304	ornithine cyclodeaminase; Validated	95.86
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.85
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	95.82
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	95.82
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	95.79
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.77
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.77
PRK05599	246	hypothetical protein; Provisional	95.77
KOG0409	327	consensus Predicted dehydrogenase [General functio	95.75
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	95.71
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	95.71
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	95.71
PRK06436	303	glycerate dehydrogenase; Provisional	95.7
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.7
PRK06141	314	ornithine cyclodeaminase; Validated	95.69
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	95.65
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.63
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.62
PRK06484	520	short chain dehydrogenase; Validated	95.6
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.59
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.59
PRK06484	520	short chain dehydrogenase; Validated	95.59
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.59
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.58
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	95.58
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	95.57
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.55
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	95.51
PRK07041	230	short chain dehydrogenase; Provisional	95.48
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.48
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	95.47
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	95.46
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.42
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	95.39
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.38
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	95.37
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.37
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.35
PLN00203	519	glutamyl-tRNA reductase	95.34
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.31
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	95.31
PRK08223	287	hypothetical protein; Validated	95.29
PRK09496	453	trkA potassium transporter peripheral membrane com	95.26
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.26
PLN02306	386	hydroxypyruvate reductase	95.25
PRK07589	346	ornithine cyclodeaminase; Validated	95.24
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	95.23
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.22
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	95.18
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.17
PRK06046	326	alanine dehydrogenase; Validated	95.16
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	95.15
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	95.14
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	95.13
PRK06823	315	ornithine cyclodeaminase; Validated	95.13
KOG1208	314	consensus Dehydrogenases with different specificit	95.11
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.08
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.06
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	95.04
PLN03129	581	NADP-dependent malic enzyme; Provisional	95.03
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.01
PRK07877	722	hypothetical protein; Provisional	95.01
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.0
PRK13303	265	L-aspartate dehydrogenase; Provisional	94.99

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=4.5e-62  Score=456.10  Aligned_cols=256  Identities=71%  Similarity=1.127  Sum_probs=236.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      |||+||||+|+||+++|+.|+.+++++||+|+|++.++|+++||+|+..+..++.+.+++|++++++|||+||+|||.|+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            59999998899999999999999999999999998779999999999744566653233456699999999999999999


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHHHHH
Q 021932          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEV  206 (305)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~la~~  206 (305)
                      ++|++|+|++..|++++++++++|++++|++|++++|||+|+||+++++++++.+++|++||||+|.|||+|+++++|++
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~  160 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL  160 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCcceeEEEEccc-CCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHHHHHHHHH
Q 021932          207 LGLDPREVDVPVVGGH-AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL  285 (305)
Q Consensus       207 l~v~~~~V~~~vlG~h-g~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~ai~  285 (305)
                      +|+++++|++|||||| |+ ++||+||++.+...++++++++|.++|+++|++|+++|.|||+|+||+|.++++++++|+
T Consensus       161 l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl  239 (310)
T cd01337         161 LGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLL  239 (310)
T ss_pred             hCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHH
Confidence            9999999999999999 88 999999999875456666689999999999999999876789999999999999999999


Q ss_pred             ccCCCCCceeEEEEEeeC
Q 021932          286 RGLRGDAGVIECAYVAST  303 (305)
Q Consensus       286 ~~~~~~~~i~~~a~v~s~  303 (305)
                      +|+++++.+++|+|++++
T Consensus       240 ~~~~~~~~~~~~s~~~~~  257 (310)
T cd01337         240 RGLKGEKGVIECAYVESD  257 (310)
T ss_pred             HhcCCCcceEEEEEEecc
Confidence            998888889999998864

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.6e-60  Score=446.33  Aligned_cols=256  Identities=64%  Similarity=1.039  Sum_probs=233.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK  127 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~  127 (305)
                      ||+||||+|+||+++|+.|+.+++++||+|+|++++.|+++||+|......++.+.+.++++++++|||+||+++|.|++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            79999999999999999999999999999999988889999999986434555432222456899999999999999999


Q ss_pred             CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHHHHHh
Q 021932          128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVL  207 (305)
Q Consensus       128 ~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l  207 (305)
                      +|++|+|++..|++++++++++|.+++|+++++++|||+|++++++++++++.+++|++||||+|.|||+||+++||+++
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l  160 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK  160 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999889999999999999999998899999999999999


Q ss_pred             CCCCcceeEEEEcccCCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHHHHHHHHHcc
Q 021932          208 GLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG  287 (305)
Q Consensus       208 ~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~ai~~~  287 (305)
                      +++|++|++|||||||+++++|+||++++...++++++++|.++|+++|++|++.|.|||+|+||+|.++++++++|+++
T Consensus       161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~  240 (312)
T TIGR01772       161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG  240 (312)
T ss_pred             CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHh
Confidence            99999999999999987699999999986444666668999999999999999986678999999999999999999988


Q ss_pred             CCCCCceeEEEEEeeC
Q 021932          288 LRGDAGVIECAYVAST  303 (305)
Q Consensus       288 ~~~~~~i~~~a~v~s~  303 (305)
                      .++++.++||+|+++.
T Consensus       241 ~~d~~~v~~~s~~~g~  256 (312)
T TIGR01772       241 LKGEEGVVECAYVESD  256 (312)
T ss_pred             hCCCccEEEEEEEccC
Confidence            7778899999998753

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=1.7e-58  Score=434.22  Aligned_cols=267  Identities=79%  Similarity=1.234  Sum_probs=244.7

Q ss_pred             cccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCC
Q 021932           36 MDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        36 ~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~a  115 (305)
                      -.|+.+++..+.||+||||+|+||+++++.|+.+++++||+|+|++++.|+++||.|+.....+..+.+++|++++++||
T Consensus         8 ~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~a   87 (323)
T PLN00106          8 RACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGA   87 (323)
T ss_pred             hccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCC
Confidence            36888888888999999999999999999999999999999999988899999999987655666544566788999999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehh
Q 021932          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Ld  195 (305)
                      |+||++||.|+++|++|+|++..|.++++++++++++++|+++++++|||+|.+++++++++++.+++||+||||++.||
T Consensus        88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LD  167 (323)
T PLN00106         88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLD  167 (323)
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecch
Confidence            99999999999999999999999999999999999999999999999999996666666677899999999999999999


Q ss_pred             hHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHH
Q 021932          196 VVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAY  275 (305)
Q Consensus       196 s~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~  275 (305)
                      ++||++++|+++|+++.+|+++|+||||+++|||+||++.+...++++++++|.++++++|++|+++|.|||+|+||+|.
T Consensus       168 s~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~  247 (323)
T PLN00106        168 VVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAY  247 (323)
T ss_pred             HHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHH
Confidence            99999999999999999999999999976699999999976434666678999999999999999986678999999999


Q ss_pred             HHHHHHHHHHccCCCCCceeEEEEEee
Q 021932          276 AAAKFADACLRGLRGDAGVIECAYVAS  302 (305)
Q Consensus       276 a~~~~~~ai~~~~~~~~~i~~~a~v~s  302 (305)
                      ++++|+++|++|+++++.++||||+.+
T Consensus       248 a~~~ii~ail~~~~~~~~v~~~s~~~~  274 (323)
T PLN00106        248 AAARFADACLRGLNGEADVVECSYVQS  274 (323)
T ss_pred             HHHHHHHHHHhccCCCceEEEEEEECc
Confidence            999999999999988989999998865

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=1.8e-58  Score=428.57  Aligned_cols=240  Identities=42%  Similarity=0.638  Sum_probs=215.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC--ceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +||+|||| |+||+++|++|+..++.+|++|+|+++  ++|.++||.|+...  ...+.. ++.+| ++++|||+||++|
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~-~~~~y-~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT-GDGDY-EDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEe-cCCCh-hhhcCCCEEEEeC
Confidence            59999999 999999999998888888999999986  79999999999743  234432 22455 8899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHH
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT  201 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~  201 (305)
                      |.||||||+|+|++..|++|+++++++|.+++||++++|+|||+|+|||++    |+.+++|++||||+ |.|||+||++
T Consensus        78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~----~k~sg~p~~rvig~gt~LDsaR~~~  153 (313)
T COG0039          78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA----MKFSGFPKNRVIGSGTVLDSARFRT  153 (313)
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH----HHhcCCCccceecccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999875    78899999999999 8999999999


Q ss_pred             HHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----C----CChhHHHHHHHHHHhchhhhhccccCCCCchhHH
Q 021932          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM  273 (305)
Q Consensus       202 ~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----~----~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~  273 (305)
                      +||++++++|++|++||+||||+ ++||+||++++.+    .    .++++++++.++||++|++|+++| |.| |.||+
T Consensus       154 ~lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~  230 (313)
T COG0039         154 FLAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP  230 (313)
T ss_pred             HHHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence            99999999999999999999999 9999999999875    1    223567899999999999999987 444 99999


Q ss_pred             HHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          274 AYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       274 A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      |.++++++++|++|+   +.++|||-
T Consensus       231 A~a~a~~~~ail~d~---~~vl~~s~  253 (313)
T COG0039         231 AAALARMVEAILRDE---KRVLPVSV  253 (313)
T ss_pred             HHHHHHHHHHHHcCC---CceEEEEE
Confidence            999999999999997   46777653

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.1e-56  Score=400.87  Aligned_cols=237  Identities=25%  Similarity=0.404  Sum_probs=217.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC---ceEEEEecCCCHHHHhCCCCEEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN---AVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~---~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      ..||+|+|+ |+||.++|+.++.+++.+|++|+|+++  ++|++|||+|...+   +++..   ..|| .+.+++++||+
T Consensus        20 ~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~---~~Dy-~~sa~S~lvIi   94 (332)
T KOG1495|consen   20 HNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA---SKDY-SVSANSKLVII   94 (332)
T ss_pred             CceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe---cCcc-cccCCCcEEEE
Confidence            459999999 999999999999999999999999988  89999999998743   34443   4576 78999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHH
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~  199 (305)
                      |||..+++|++|++++++|+.+++.+++++.+|.||++++++|||+|+|||++    ||.+|||++||||. |+|||+||
T Consensus        95 TAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~----wKLSgfP~nRViGsGcnLDsaRF  170 (332)
T KOG1495|consen   95 TAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVT----WKLSGFPKNRVIGSGCNLDSARF  170 (332)
T ss_pred             ecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHH----HHHcCCcccceeccCcCccHHHH
Confidence            99999999999999999999999999999999999999999999999999864    99999999999999 89999999


Q ss_pred             HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC------------CCChhHHHHHHHHHHhchhhhhccccCCC
Q 021932          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (305)
Q Consensus       200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~g~~i~~~k~gkg  267 (305)
                      |++++++||++|+++++||+||||| +.||+||...+.+            ..+++.|+++-++|...+|+|+++|   |
T Consensus       171 ryLi~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklK---G  246 (332)
T KOG1495|consen  171 RYLIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLK---G  246 (332)
T ss_pred             HHHHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhc---C
Confidence            9999999999999999999999999 8999999998853            2356679999999999999999975   8


Q ss_pred             CchhHHHHHHHHHHHHHHccCCCCCceeEEE
Q 021932          268 SATLSMAYAAAKFADACLRGLRGDAGVIECA  298 (305)
Q Consensus       268 ~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a  298 (305)
                      +|+|++|.++++++++|++|++   .+.|.+
T Consensus       247 yTswaIglsva~l~~ail~n~~---~i~~Vs  274 (332)
T KOG1495|consen  247 YTSWAIGLSVADLAQAILRNLR---RIHPVS  274 (332)
T ss_pred             chHHHHHHHHHHHHHHHHhCcC---ceeeee
Confidence            9999999999999999999986   455554

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=3.8e-56  Score=399.01  Aligned_cols=284  Identities=69%  Similarity=1.070  Sum_probs=262.0

Q ss_pred             hHHHHHHHhhhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhh
Q 021932            9 NQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA   88 (305)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~   88 (305)
                      .+++-+.++++.+     .+.+.+|+       ...+..||+|.||+|-+|+.++++|+++++++++.|||+..+.|.+.
T Consensus         3 ~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaa   70 (345)
T KOG1494|consen    3 LKSLIRSSASLSS-----GPKRVFSS-------GSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAA   70 (345)
T ss_pred             hHHHHHhhhhhcc-----CCcccccc-------cccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccc
Confidence            3456666676632     22332333       44445599999999999999999999999999999999988999999


Q ss_pred             hhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 021932           89 DISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (305)
Q Consensus        89 DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~  168 (305)
                      ||+|..+...+.++.+...+++++++||+|||.||+||||||+|.|++..|+.|+++++..+.++||+|.+.++|||+|.
T Consensus        71 DlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNs  150 (345)
T KOG1494|consen   71 DLSHINTNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNS  150 (345)
T ss_pred             cccccCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccc
Confidence            99999988889988877789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCC-cceeEEEEcccCCcceeeccccCCCCCCCChhHHHH
Q 021932          169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDY  247 (305)
Q Consensus       169 lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~-~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~  247 (305)
                      +++++++++++.+.|+|+|+||+|.||..|++.++++.++++| ++++++|+|+|.+.|++|++|+.++...+++++++.
T Consensus       151 tVPIaaevlKk~G~ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~  230 (345)
T KOG1494|consen  151 TVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEA  230 (345)
T ss_pred             cchHHHHHHHHcCCCCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHH
Confidence            9999999999999999999999999999999999999999999 559999999998889999999999877789999999


Q ss_pred             HHHHHHhchhhhhccccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEEeeCC
Q 021932          248 LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTV  304 (305)
Q Consensus       248 i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~s~~  304 (305)
                      ++.+++.+|.|++++|.|+|++.+|+|+|.++++.+++++++|+.++++|+||+|.+
T Consensus       231 Lt~RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~~  287 (345)
T KOG1494|consen  231 LTHRIQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASPV  287 (345)
T ss_pred             HHHHHHhCCceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEeccc
Confidence            999999999999999999999999999999999999999999999999999999975

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=9.1e-56  Score=415.42  Aligned_cols=258  Identities=63%  Similarity=0.993  Sum_probs=231.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .+++||+||||+|+||+++++.|+..++++||+|+|++.+.|+++||.|+.....+..+....+++++++|+|+||+++|
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            35669999998899999999999989999999999996589999999998653344433221343589999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHH
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV  203 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~l  203 (305)
                      .+++++++|.+++..|++++++++++|++++|+++++++|||+|+|++++.+.+++.+++||+||||++.|||+||+++|
T Consensus        86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~l  165 (321)
T PTZ00325         86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFV  165 (321)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987555578899999999999889999999999


Q ss_pred             HHHhCCCCcceeEEEEcccCCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHHHHHHH
Q 021932          204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA  283 (305)
Q Consensus       204 a~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~a  283 (305)
                      |++++++|++|++|||||||++++||+||++.+  +++++++++|.++|+++|++|++.|.|||+|+||+|.++++++++
T Consensus       166 a~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g~--~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~a  243 (321)
T PTZ00325        166 AEALGMNPYDVNVPVVGGHSGVTIVPLLSQTGL--SLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTS  243 (321)
T ss_pred             HHHhCcChhheEEEEEeecCCcccccchhccCC--CCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Confidence            999999999999999999998569999999933  577777999999999999999998867899999999999999999


Q ss_pred             HHccCCCCCceeEEEEEeeC
Q 021932          284 CLRGLRGDAGVIECAYVAST  303 (305)
Q Consensus       284 i~~~~~~~~~i~~~a~v~s~  303 (305)
                      |++|+.+++.+++|+|+++.
T Consensus       244 il~~~~~~~~v~~~~~~~g~  263 (321)
T PTZ00325        244 VLKALRGDKGIVECAFVESD  263 (321)
T ss_pred             HHhhcCCCCCeEEEEEEecC
Confidence            99998888899999998753

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=3.9e-56  Score=416.36  Aligned_cols=238  Identities=28%  Similarity=0.406  Sum_probs=213.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC---ceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN---AVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~---~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ||+|||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||.|...+   ..++...  +|| ++++|||+||+||
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~y-~~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GDY-DDCADADIIVITA   76 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CCH-HHhCCCCEEEECC
Confidence            7999999 999999999999999999999999987  79999999997542   2455442  465 8899999999999


Q ss_pred             CCCCCCCCc--hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHH
Q 021932          123 GVPRKPGMT--RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (305)
Q Consensus       123 g~~~~~g~~--r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~  199 (305)
                      |.|+++||+  |+|++..|++|+++++++|++++|+++++++|||+|+|||++    ++.+|||++||||+ |.|||+||
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~----~k~sg~p~~rviG~gt~LDs~R~  152 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA----ATEFDYPANKVIGTGTMLDTARL  152 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH----HHHhCcChhheecccchHHHHHH
Confidence            999999999  699999999999999999999999999999999999999875    77889999999999 89999999


Q ss_pred             HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C----C-----ChhHHHHHHHHHHhchhhhhccccCCCCc
Q 021932          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----L-----TPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (305)
Q Consensus       200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~----~-----~~~~~~~i~~~v~~~g~~i~~~k~gkg~t  269 (305)
                      ++++|+++|++|++|++|||||||+ +++|+||++++++ +    +     ++.++++|.++++++|++|++.   ||+|
T Consensus       153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---KG~t  228 (307)
T cd05290         153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNR---KGWT  228 (307)
T ss_pred             HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHc---cCee
Confidence            9999999999999999999999999 9999999999865 1    1     1224789999999999999995   5899


Q ss_pred             hhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          270 TLSMAYAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       270 ~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                      +|++|.++++++++|+.|.   +.+++|+..
T Consensus       229 ~~~ia~a~~~ii~ail~d~---~~v~~vsv~  256 (307)
T cd05290         229 NAGIAKSASRLIKAILLDE---RSILPVCTL  256 (307)
T ss_pred             hHHHHHHHHHHHHHHHhCC---CeEEEEEEe
Confidence            9999999999999999885   467776553

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-54  Score=407.51  Aligned_cols=254  Identities=62%  Similarity=0.965  Sum_probs=229.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      |||+||||+|.||+++++.|.. .+...+|+|+|+++ ..|+++|+.|......++.+. .+|++++++|+|+||+|+|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~-~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFS-GEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeC-CCCHHHHcCCCCEEEEcCCC
Confidence            6999999999999999998865 56778999999977 677889999863223444321 34666899999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHHH
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVA  204 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~la  204 (305)
                      +++++++|.+++..|++++++++++|++++|+++++++|||+|+||+++++.+++.+++|++||||+|.|||+|+++++|
T Consensus        80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia  159 (312)
T PRK05086         80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA  159 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888899999999999999999999999999


Q ss_pred             HHhCCCCcceeEEEEcccCCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHHHHHHHH
Q 021932          205 EVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC  284 (305)
Q Consensus       205 ~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~ai  284 (305)
                      ++++++|++|+++||||||++++||+||++ -+.+++++++++|.++|+++|++|+++|.|||+|+||+|.++++++++|
T Consensus       160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai  238 (312)
T PRK05086        160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL  238 (312)
T ss_pred             HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence            999999999999999999777999999999 3235777779999999999999999987678999999999999999999


Q ss_pred             HccCCCCCceeEEEEEee
Q 021932          285 LRGLRGDAGVIECAYVAS  302 (305)
Q Consensus       285 ~~~~~~~~~i~~~a~v~s  302 (305)
                      ++++++++.++||+|+.+
T Consensus       239 ~~~~~~~~~v~~~~~~~~  256 (312)
T PRK05086        239 VRALQGEQGVVECAYVEG  256 (312)
T ss_pred             HhcCCCCCcEEEEEEEec
Confidence            999988999999998865

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=8.7e-55  Score=409.56  Aligned_cols=245  Identities=29%  Similarity=0.396  Sum_probs=215.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----CchhhhhhhcccC-C-ceEEEEecCCCHHHHhC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-N-AVVRGFLGQQQLEDALT  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~-----el~L~D~~~----~~g~~~DL~~~~~-~-~~v~~~~~t~d~~~al~  113 (305)
                      +|.||+||||+|+||+++++.|+..++++     ||+|+|+++    ++|+++||+|+.. . ..++..  .++ +++++
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~   78 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAFK   78 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHhC
Confidence            46799999988999999999999999999     999999954    6999999999862 1 223332  234 48999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEEe
Q 021932          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tNPvd~lt~~~~~~~~~~s-~~p~~kviG~  191 (305)
                      |||+||+|||.|+++||+|+|++..|++++++++++|++++| +++++++|||+|+|||++    ++.+ |||++||||+
T Consensus        79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG~  154 (323)
T TIGR01759        79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA----SKNAPDIPPKNFSAM  154 (323)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEe
Confidence            999999999999999999999999999999999999999998 999999999999999875    6778 9999999999


Q ss_pred             eehhhHHHHHHHHHHhCCCCccee-EEEEcccCCcceeeccccCCCCC-C----CChhH--HHHHHHHHHhchhhhhccc
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTEVVEAK  263 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~g~~i~~~k  263 (305)
                      |.|||+|||++||++++++|++|+ .+||||||+ +++|+||++++.+ +    +++++  +++|.++++++|++|++. 
T Consensus       155 t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~-  232 (323)
T TIGR01759       155 TRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEA-  232 (323)
T ss_pred             eHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhc-
Confidence            999999999999999999999995 679999999 9999999999864 1    33333  579999999999999995 


Q ss_pred             cCCCCchh-HHHHHHHHHHHHHHccCCCCCceeEEE-EEe
Q 021932          264 TGAGSATL-SMAYAAAKFADACLRGLRGDAGVIECA-YVA  301 (305)
Q Consensus       264 ~gkg~t~~-s~A~a~~~~~~ai~~~~~~~~~i~~~a-~v~  301 (305)
                        ||+|+| ++|.++++++++|++|+.. +.++||| |++
T Consensus       233 --kG~t~~~~~a~a~~~iv~ail~~~~~-~~v~~~s~~~~  269 (323)
T TIGR01759       233 --RGASSAASAANAAIDHVRDWVTGTPE-GDWVSMGVYSD  269 (323)
T ss_pred             --cCCcchHHHHHHHHHHHHHHHcCCCC-CcEEEEEEEeC
Confidence              588999 4779999999999999732 4599998 544

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=1.5e-54  Score=406.60  Aligned_cols=240  Identities=26%  Similarity=0.376  Sum_probs=214.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCce-EEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAV-VRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~-v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      .+||+|||+ |+||+++|+.|+..++++||+|+|+++  +.|+++||+|+..+.. ... ..++|| ++++|||+||+++
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v-~~~~dy-~~~~~adivvita   79 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKI-EADKDY-SVTANSKVVIVTA   79 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEE-EECCCH-HHhCCCCEEEECC
Confidence            459999998 999999999999999999999999987  7899999999873221 222 224577 5799999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHH
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT  201 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~  201 (305)
                      |.++++||+|+|++..|++++++++++|++++|+++++++|||+|+||+++    ++.+|+|++||||+ |.||++|+++
T Consensus        80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~k~sg~p~~~viG~gt~Ld~~R~~~  155 (312)
T cd05293          80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA----WKLSGLPKHRVIGSGCNLDSARFRY  155 (312)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH----HHHhCCCHHHEEecCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998765    67789999999999 8999999999


Q ss_pred             HHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C-----------CChhHHHHHHHHHHhchhhhhccccCCCCc
Q 021932          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S-----------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (305)
Q Consensus       202 ~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~-----------~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t  269 (305)
                      ++|+++++++++|+++||||||+ +++|+||++++++ +           .+++++++|.++++++|++|++.   ||+|
T Consensus       156 ~la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kg~t  231 (312)
T cd05293         156 LIAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKL---KGYT  231 (312)
T ss_pred             HHHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHh---cCCc
Confidence            99999999999999999999999 9999999999864 1           12345889999999999999995   5899


Q ss_pred             hhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          270 TLSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       270 ~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      +||+|.++++++++|+.|.+   .+++|+.
T Consensus       232 ~~~~a~a~~~ii~ail~d~~---~~~~vsv  258 (312)
T cd05293         232 SWAIGLSVADLVDAILRNTG---RVHSVST  258 (312)
T ss_pred             hHHHHHHHHHHHHHHHcCCC---eEEEEEE
Confidence            99999999999999998864   6777754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=2.4e-54  Score=410.11  Aligned_cols=240  Identities=24%  Similarity=0.401  Sum_probs=215.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC-ceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +||+|||+ |+||+++|+.|+..++++||+|+|+++  +.|+++||+|+..+ ...+.. .++|| ++++|||+||++||
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~-~~~dy-~~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL-ASTDY-AVTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE-eCCCH-HHhCCCCEEEECCC
Confidence            69999998 999999999999999999999999987  78999999998632 223332 23466 67999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHHH
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~~  202 (305)
                      .++++||+|+|++..|++++++++++|+++||+++++++|||+|++|+++    ++.+|||++||||+ |.||++|++++
T Consensus       115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~----~k~sg~p~~rviG~gt~LDs~R~r~~  190 (350)
T PLN02602        115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA----WKLSGFPANRVIGSGTNLDSSRFRFL  190 (350)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHHhCCCHHHEEeecchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999875    66779999999999 69999999999


Q ss_pred             HHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C-----------CChhHHHHHHHHHHhchhhhhccccCCCCch
Q 021932          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S-----------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (305)
Q Consensus       203 la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~-----------~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~  270 (305)
                      ||+++|+++++|+++||||||+ +++|+||++++.+ +           +++++++++.++++++|++|++.   ||+|+
T Consensus       191 lA~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---KG~t~  266 (350)
T PLN02602        191 IADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKL---KGYTS  266 (350)
T ss_pred             HHHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhc---CCccH
Confidence            9999999999999999999998 9999999998853 1           23345789999999999999994   58999


Q ss_pred             hHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          271 LSMAYAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       271 ~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                      ||+|.++++++++|++|+   +.++|||..
T Consensus       267 ~gia~a~a~ii~ail~d~---~~v~~vsv~  293 (350)
T PLN02602        267 WAIGYSVASLVRSLLRDQ---RRIHPVSVL  293 (350)
T ss_pred             HHHHHHHHHHHHHHHhcC---CCeEEEEEe
Confidence            999999999999999997   478888764

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=3.9e-54  Score=405.58  Aligned_cols=244  Identities=23%  Similarity=0.329  Sum_probs=215.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----Cchhhhhhhccc-CC-ceEEEEecCCCHHHHhC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMD-TN-AVVRGFLGQQQLEDALT  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~-----el~L~D~~~----~~g~~~DL~~~~-~~-~~v~~~~~t~d~~~al~  113 (305)
                      +|+||+||||+|+||+++|+.|...++++     ||+|+|+++    ++|+++||+|+. .. ..++..  +++ +++++
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~~   79 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAFK   79 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHhC
Confidence            45699999988999999999999999998     999999954    689999999986 22 234432  345 48999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEEe
Q 021932          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s-~~p~~kviG~  191 (305)
                      |||+||++||.++++|++|+|++..|++++++++++|++++ |+++++++|||+|+|||++    ++.+ |||++||||+
T Consensus        80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG~  155 (326)
T PRK05442         80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA----MKNAPDLPAENFTAM  155 (326)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH----HHHcCCCCHHHEEee
Confidence            99999999999999999999999999999999999999988 7999999999999999875    5677 9999999999


Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeEE-EEcccCCcceeeccccCCCCCC-----CChhH--HHHHHHHHHhchhhhhccc
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVKPSCS-----LTPTE--IDYLTDRIQNGGTEVVEAK  263 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~~-vlG~hg~~t~vp~~S~~~v~~~-----~~~~~--~~~i~~~v~~~g~~i~~~k  263 (305)
                      |.|||+||+++||++|+++|++|++| ||||||+ +++|+||++++++.     +++++  +++|.++++++|++|++. 
T Consensus       156 t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~-  233 (326)
T PRK05442        156 TRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEA-  233 (326)
T ss_pred             eHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhC-
Confidence            99999999999999999999999986 5999999 99999999999751     34443  578999999999999995 


Q ss_pred             cCCCCchhHHHHH-HHHHHHHHHccCCCCCceeEEEEE
Q 021932          264 TGAGSATLSMAYA-AAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       264 ~gkg~t~~s~A~a-~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                        ||+|+|++|.+ +++++++|++|.. ++.++|||.+
T Consensus       234 --kG~t~~~~a~~~~~~iv~ail~~~~-~~~i~~~sv~  268 (326)
T PRK05442        234 --RGASSAASAANAAIDHVRDWVLGTP-EGDWVSMGVP  268 (326)
T ss_pred             --cCCccHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEE
Confidence              58999999999 5999999999953 3569999854

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=1.3e-53  Score=398.27  Aligned_cols=234  Identities=24%  Similarity=0.421  Sum_probs=210.5

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC--ceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        51 IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      |||+ |+||+++|+.|+..++++||+|+|+++  ++|+++||+|+...  ..++..  .+|| ++++|||+||+++|.|+
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~~-~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR--SGDY-SDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe--cCCH-HHHCCCCEEEECCCCCC
Confidence            6898 999999999999999999999999987  79999999998632  234433  2465 89999999999999999


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHHHHHH
Q 021932          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAE  205 (305)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~~la~  205 (305)
                      ++||+|.|++..|++++++++++|++++|+++++++|||+|+||+++    ++.+++|++||||+ |.|||+|+++++|+
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~~~sg~p~~~viG~gt~LDs~R~~~~la~  152 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA----WKLSGFPKNRVIGSGTVLDTARLRYLLAE  152 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----HHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998765    66789999999999 79999999999999


Q ss_pred             HhCCCCcceeEEEEcccCCcceeeccccCCCCC-C---C-------ChhHHHHHHHHHHhchhhhhccccCCCCchhHHH
Q 021932          206 VLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S---L-------TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA  274 (305)
Q Consensus       206 ~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~---~-------~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A  274 (305)
                      +++++|++|+++||||||+ +++|+||++++++ +   +       ++.+++++.++++++|++|++.   ||+|+|++|
T Consensus       153 ~l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~---kG~t~~~~a  228 (299)
T TIGR01771       153 KLGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINR---KGATYYGIG  228 (299)
T ss_pred             HhCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhc---CCeeeHHHH
Confidence            9999999999999999999 9999999999864 1   2       1234679999999999999995   589999999


Q ss_pred             HHHHHHHHHHHccCCCCCceeEEEE
Q 021932          275 YAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       275 ~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      +++++++++|++|+   +.++|||.
T Consensus       229 ~a~~~~i~ail~d~---~~v~~~s~  250 (299)
T TIGR01771       229 MAVARIVEAILHDE---NRVLPVSA  250 (299)
T ss_pred             HHHHHHHHHHHcCC---CcEEEEEE
Confidence            99999999999996   57999973

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=2.5e-52  Score=392.38  Aligned_cols=241  Identities=25%  Similarity=0.398  Sum_probs=216.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC-ceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      ..+||+|||| |.||+++++.|+..++++||+|+|+++  ++|+++||.|+..+ ..+...  ++++ ++++|||+||++
T Consensus         5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~--~~~~-~~~~~adivIit   80 (315)
T PRK00066          5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY--AGDY-SDCKDADLVVIT   80 (315)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE--eCCH-HHhCCCCEEEEe
Confidence            3459999998 999999999999999999999999987  78999999998632 334443  2465 789999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHH
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~  200 (305)
                      +|.|+++|++|.|++..|+++++++++.+++++|+++++++|||+|++|+++    ++.+|+|++||||+ |.|||+|++
T Consensus        81 ag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~----~k~sg~p~~~viG~gt~LDs~R~~  156 (315)
T PRK00066         81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT----WKLSGFPKERVIGSGTSLDSARFR  156 (315)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH----HHHhCCCHHHEeecCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998765    56679999999999 789999999


Q ss_pred             HHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-----------CCChhHHHHHHHHHHhchhhhhccccCCCCc
Q 021932          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (305)
Q Consensus       201 ~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t  269 (305)
                      +++|+++|++|++|+++||||||+ +++|+||++++++           .+++++++++.++++++|++|++.   ||++
T Consensus       157 ~~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~---kg~t  232 (315)
T PRK00066        157 YMLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEK---KGAT  232 (315)
T ss_pred             HHHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhc---CCee
Confidence            999999999999999999999999 9999999999854           134466889999999999999995   5899


Q ss_pred             hhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          270 TLSMAYAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       270 ~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                      +|++|+++++++++|++++   +.++||+..
T Consensus       233 ~~~~a~~~~~i~~ail~~~---~~v~~~sv~  260 (315)
T PRK00066        233 YYGIAMALARITKAILNNE---NAVLPVSAY  260 (315)
T ss_pred             hHHHHHHHHHHHHHHHcCC---CeEEEEEEE
Confidence            9999999999999999985   478888754

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=1.6e-52  Score=394.49  Aligned_cols=242  Identities=31%  Similarity=0.420  Sum_probs=212.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----CchhhhhhhcccC--CceEEEEecCCCHHHHhCCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMD  116 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~-----el~L~D~~~----~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aD  116 (305)
                      ||+||||+|+||+++++.|+.+++++     +|+|+|+++    ++|+++||.|+..  .......  ..+ +++++|||
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~~~-~~~~~~aD   78 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--TDP-EEAFKDVD   78 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--cCh-HHHhCCCC
Confidence            89999999999999999999999888     499999985    6899999999852  2223322  234 58999999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCC-CCCCcEEEeeeh
Q 021932          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT-YDPKRLLGVTML  194 (305)
Q Consensus       117 iVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~-~p~~kviG~t~L  194 (305)
                      +||++||.|+++|++|+|++..|++++++++++|++++ |+++++++|||+|+|||++    ++.+| +|++||||+|.|
T Consensus        79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~vig~t~L  154 (323)
T cd00704          79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA----LKNAPNLPPKNFTALTRL  154 (323)
T ss_pred             EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEeeHH
Confidence            99999999999999999999999999999999999996 9999999999999999875    67788 599999999999


Q ss_pred             hhHHHHHHHHHHhCCCCccee-EEEEcccCCcceeeccccCCCCCC-C-------ChhH--HHHHHHHHHhchhhhhccc
Q 021932          195 DVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSCS-L-------TPTE--IDYLTDRIQNGGTEVVEAK  263 (305)
Q Consensus       195 ds~R~~~~la~~l~v~~~~V~-~~vlG~hg~~t~vp~~S~~~v~~~-~-------~~~~--~~~i~~~v~~~g~~i~~~k  263 (305)
                      ||+|||++||++|+++|++|+ ++||||||+ +++|+||++++.+. +       .+++  .++|.++++++|++|++. 
T Consensus       155 Ds~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~-  232 (323)
T cd00704         155 DHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKK-  232 (323)
T ss_pred             HHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhc-
Confidence            999999999999999999995 689999999 99999999998641 1       2234  578999999999999995 


Q ss_pred             cCCCCchhH-HHHHHHHHHHHHHccCCCCCceeEEE-EEe
Q 021932          264 TGAGSATLS-MAYAAAKFADACLRGLRGDAGVIECA-YVA  301 (305)
Q Consensus       264 ~gkg~t~~s-~A~a~~~~~~ai~~~~~~~~~i~~~a-~v~  301 (305)
                        ||+|+|+ +|+++++++++|++|++++ .++||| |++
T Consensus       233 --kg~t~~~~~a~a~~~iv~ail~~~~~~-~v~~~s~~~~  269 (323)
T cd00704         233 --RGASSAASAAKAIADHVKDWLFGTPPG-EIVSMGVYSP  269 (323)
T ss_pred             --cCcchhHHHHHHHHHHHHHHHhCCCCC-cEEEEEEEeC
Confidence              5789996 6999999999999998766 499997 443

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=3.5e-52  Score=403.77  Aligned_cols=246  Identities=22%  Similarity=0.252  Sum_probs=215.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhC-------CCCcEEEEEeCCC--CchhhhhhhcccC--CceEEEEecCCCHHHHh
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKIN-------PLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDAL  112 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~-------~~~~el~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al  112 (305)
                      .++.||+||||+|+||+++|+.|+.+       +++.||+|+|+++  ++|++|||+|+..  ...+...  +++| +++
T Consensus        98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~y-e~~  174 (444)
T PLN00112         98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDPY-EVF  174 (444)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCCH-HHh
Confidence            44679999999999999999999998       7778999999988  7999999999862  2234322  3455 899


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHH-hCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-CCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~-~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      +|||+||+++|.|+++||+|+|++..|++|+++++++|++ ++|++++|++|||+|+||+++    ++.++++++|+||+
T Consensus       175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~----~k~sg~~~~rViGt  250 (444)
T PLN00112        175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC----LKNAPNIPAKNFHA  250 (444)
T ss_pred             CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH----HHHcCCCCcceEEe
Confidence            9999999999999999999999999999999999999999 589999999999999999875    67789999999999


Q ss_pred             -eehhhHHHHHHHHHHhCCCCcce-eEEEEcccCCcceeeccccCCCCC-C----CChhH--HHHHHHHHHhchhhhhcc
Q 021932          192 -TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTEVVEA  262 (305)
Q Consensus       192 -t~Lds~R~~~~la~~l~v~~~~V-~~~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~g~~i~~~  262 (305)
                       |.|||+||+++||+++++++++| .+|||||||+ ++||+||++++++ +    +++++  +++|.++++++|++|++.
T Consensus       251 gT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~  329 (444)
T PLN00112        251 LTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKK  329 (444)
T ss_pred             eccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHhc
Confidence             89999999999999999999999 5699999999 9999999999965 2    33334  579999999999999994


Q ss_pred             ccCCCCchh-HHHHHHHHHHHHHHccCCCCCceeEEEEEe
Q 021932          263 KTGAGSATL-SMAYAAAKFADACLRGLRGDAGVIECAYVA  301 (305)
Q Consensus       263 k~gkg~t~~-s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~  301 (305)
                         ||+++| ++|.++++++++|+.+.. ++.++|||..-
T Consensus       330 ---kG~t~~~s~a~ai~~~I~ail~~~d-~~~vlpvsv~l  365 (444)
T PLN00112        330 ---WGRSSAASTAVSIADAIKSLVTPTP-EGDWFSTGVYT  365 (444)
T ss_pred             ---cCchhHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEEe
Confidence               577777 999999999999995432 56799998653

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=7.1e-52  Score=396.20  Aligned_cols=246  Identities=23%  Similarity=0.265  Sum_probs=212.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEE--eCCC--Cchhhhhhhccc-C-CceEEEEecCCCHHHH
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLY--DVVN--TPGVTADISHMD-T-NAVVRGFLGQQQLEDA  111 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~-----el~L~--D~~~--~~g~~~DL~~~~-~-~~~v~~~~~t~d~~~a  111 (305)
                      ..++.||+||||+|+||+++|+.|+.+++++     +|+|+  |+++  ++|+++||+|+. . ...+...  ++++ ++
T Consensus        41 ~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~y-~~  117 (387)
T TIGR01757        41 WKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDPY-EV  117 (387)
T ss_pred             CCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCCH-HH
Confidence            3446799999999999999999999999988     57777  6655  799999999986 2 2234322  3454 89


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 021932          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG  190 (305)
                      ++|||+||++||.|+++|++|+|++..|+++++++++.|++++ |++++|++|||+|+||+++    ++.+++||+|+||
T Consensus       118 ~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~----~k~sg~~~~rviG  193 (387)
T TIGR01757       118 FEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA----MKNAPNIPRKNFH  193 (387)
T ss_pred             hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH----HHHcCCCcccEEE
Confidence            9999999999999999999999999999999999999999987 9999999999999999875    6778999999999


Q ss_pred             e-eehhhHHHHHHHHHHhCCCCccee-EEEEcccCCcceeeccccCCCCC-C----CChhH--HHHHHHHHHhchhhhhc
Q 021932          191 V-TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTEVVE  261 (305)
Q Consensus       191 ~-t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~g~~i~~  261 (305)
                      + |.|||+|||++||++|++++++|+ +|||||||+ ++||+||++++.+ +    +++.+  +++|.++++++|++|++
T Consensus       194 ~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~  272 (387)
T TIGR01757       194 ALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIK  272 (387)
T ss_pred             ecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHh
Confidence            9 899999999999999999999995 999999999 9999999999865 2    22323  67999999999999999


Q ss_pred             cccCCCCchh-HHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          262 AKTGAGSATL-SMAYAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       262 ~k~gkg~t~~-s~A~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                      .   ||+++| ++|.++++++++|+.+.. ++.++|||.+
T Consensus       273 ~---KG~t~~~s~a~ai~~~i~ai~~g~d-~~~il~vsv~  308 (387)
T TIGR01757       273 K---WGRSSAASTAVSIADAIKSLVVPTP-EGDWFSTGVY  308 (387)
T ss_pred             c---cCchhHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEE
Confidence            4   566777 999999999999995543 4568888764

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=1.4e-51  Score=388.02  Aligned_cols=244  Identities=23%  Similarity=0.328  Sum_probs=214.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----CchhhhhhhcccC--CceEEEEecCCCHHHHhC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--NAVVRGFLGQQQLEDALT  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~-----el~L~D~~~----~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~  113 (305)
                      +|+||+||||+|+||+++|+.|+..++++     ||+|+|+++    ++|+++||+|+..  ...++..  +.+ +++++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~   77 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK   77 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence            36799999988999999999999999999     999999954    6899999999862  1234432  345 48999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEEe
Q 021932          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s-~~p~~kviG~  191 (305)
                      |||+||+|||.|+++|++|+|++..|++++++++++|++++ |++++|++|||+|+|||++    ++.+ ++|++||+|+
T Consensus        78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~ViG~  153 (322)
T cd01338          78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA----MKNAPDIPPDNFTAM  153 (322)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH----HHHcCCCChHheEEe
Confidence            99999999999999999999999999999999999999999 5999999999999999875    5677 5999999999


Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeE-EEEcccCCcceeeccccCCCCC-C----CChhH--HHHHHHHHHhchhhhhccc
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTEVVEAK  263 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~-~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~g~~i~~~k  263 (305)
                      |.||++||++++|+++|+++++|++ +||||||+ +++|+||++++.+ +    +++.+  +++|.++++++|++|++. 
T Consensus       154 t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~-  231 (322)
T cd01338         154 TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKA-  231 (322)
T ss_pred             hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhC-
Confidence            9999999999999999999999997 56999998 9999999998864 1    34443  579999999999999995 


Q ss_pred             cCCCCchhHHH-HHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          264 TGAGSATLSMA-YAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       264 ~gkg~t~~s~A-~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                        ||+++|++| .++++++++|++|++ ++.++|||.+
T Consensus       232 --kG~t~~~~~a~a~~~iv~ail~~~~-~~~i~~~sv~  266 (322)
T cd01338         232 --RGASSAASAANAAIDHMRDWVLGTP-EGDWFSMAVP  266 (322)
T ss_pred             --cCCccHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEE
Confidence              589999999 599999999999985 3468888653

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=3.4e-51  Score=383.54  Aligned_cols=240  Identities=28%  Similarity=0.406  Sum_probs=213.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC--CceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +||+|||+ |.||+++++.|+..++..+|+|+|+++  +++.++||.|...  .......  ..++ +++++||+||+++
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~~-~~l~~aDIVIita   76 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGDY-SDCKDADIVVITA   76 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCCH-HHhCCCCEEEEcc
Confidence            38999998 999999999999999888999999987  6889999999753  1223332  2455 6799999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHH
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT  201 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~  201 (305)
                      |.|+++||+|.|++.+|++++++++++|++++|+++++++|||+|+||+++    ++.+++|++||||+ |.||++|+++
T Consensus        77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~----~~~~g~p~~~v~g~gt~LDs~R~~~  152 (306)
T cd05291          77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV----QKLSGLPKNRVIGTGTSLDTARLRR  152 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH----HHHhCcCHHHEeeccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998765    66789999999999 7899999999


Q ss_pred             HHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C---------CChhHHHHHHHHHHhchhhhhccccCCCCchh
Q 021932          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S---------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATL  271 (305)
Q Consensus       202 ~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~---------~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~  271 (305)
                      +||+++++++++|+++||||||+ +++|+||++++.+ +         +.+++++++.++++++|++|++.   ||+|+|
T Consensus       153 ~la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~---kg~t~~  228 (306)
T cd05291         153 ALAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIING---KGATYY  228 (306)
T ss_pred             HHHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHc---cCccHH
Confidence            99999999999999999999999 9999999999864 1         23456889999999999999994   589999


Q ss_pred             HHHHHHHHHHHHHHccCCCCCceeEEEEEe
Q 021932          272 SMAYAAAKFADACLRGLRGDAGVIECAYVA  301 (305)
Q Consensus       272 s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~  301 (305)
                      ++|.++++++++|++|.   +.++|||..-
T Consensus       229 ~~a~a~~~~~~ail~~~---~~v~~~s~~~  255 (306)
T cd05291         229 GIATALARIVKAILNDE---NAILPVSAYL  255 (306)
T ss_pred             HHHHHHHHHHHHHHcCC---CEEEEEEEEe
Confidence            99999999999999984   5789987643

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=6.8e-51  Score=380.52  Aligned_cols=239  Identities=30%  Similarity=0.451  Sum_probs=214.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC-ceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      |+|||+ |.||+++|+.|+..++++||+|+|+++  +.|+++||.|.... ...+... ++|+ ++++|||+||+++|.|
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~~-~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGDY-ADAADADIVVITAGAP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCCH-HHhCCCCEEEEcCCCC
Confidence            689998 999999999999999999999999987  78999999998643 2233332 3465 7999999999999999


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHHHHH
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVA  204 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~~la  204 (305)
                      +++||+|.|++.+|++++++++++|++++|+++++++|||+|+||+++    ++.+|+|++||||+ |.|||+|+++++|
T Consensus        78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~----~~~sg~~~~kviG~gt~lDs~r~~~~la  153 (300)
T cd00300          78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVA----QKLSGLPKNRVIGSGTLLDSARFRSLLA  153 (300)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHH----HHHhCcCHHHEEecCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998765    67789999999999 6899999999999


Q ss_pred             HHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C----C--ChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHH
Q 021932          205 EVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----L--TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAA  277 (305)
Q Consensus       205 ~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~----~--~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~  277 (305)
                      +++++++++|+++|+||||+ +++|+||++++++ +    +  ++++++++.++++++|++|++.   ||+++||+|.++
T Consensus       154 ~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~---kg~t~~~~a~a~  229 (300)
T cd00300         154 EKLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRL---KGATNYGIATAI  229 (300)
T ss_pred             HHhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHc---cCcchHHHHHHH
Confidence            99999999999999999999 9999999999864 2    1  2345789999999999999994   589999999999


Q ss_pred             HHHHHHHHccCCCCCceeEEEEEe
Q 021932          278 AKFADACLRGLRGDAGVIECAYVA  301 (305)
Q Consensus       278 ~~~~~ai~~~~~~~~~i~~~a~v~  301 (305)
                      ++++++|++|+   +.++||+.+-
T Consensus       230 ~~~~~ai~~~~---~~v~~~s~~~  250 (300)
T cd00300         230 ADIVKSILLDE---RRVLPVSAVQ  250 (300)
T ss_pred             HHHHHHHHcCC---CeEEEEEEEe
Confidence            99999999985   5799998654

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.3e-50  Score=379.35  Aligned_cols=239  Identities=32%  Similarity=0.544  Sum_probs=214.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC----CceEEEEecCCCHHHHhCCCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      +||+|||+ |.||+.+|+.++..++. +|+|+|+++  ..|.++|+.|...    ..+++.   ++|+ +++++||+||+
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~---t~d~-~~~~~aDiVIi   75 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG---TNNY-ADTANSDIVVI   75 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe---cCCH-HHhCCCCEEEE
Confidence            59999998 99999999999999987 899999977  5778888888642    123432   4677 55999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-ehhhHHH
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRA  199 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t-~Lds~R~  199 (305)
                      |+|.|+++|++|+|++..|.+++++++++|.+++|++++|++|||+|+||+++    ++.+|+|++||||+| .|||+|+
T Consensus        76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~----~~~sg~~~~rviG~g~~lds~R~  151 (305)
T TIGR01763        76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA----WQKSGFPKERVIGQAGVLDSARF  151 (305)
T ss_pred             cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHEEEeccchHHHHH
Confidence            99999999999999999999999999999999999999999999999998765    677899999999995 8999999


Q ss_pred             HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C----CChhHHHHHHHHHHhchhhhhccccCCCCchhHHH
Q 021932          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA  274 (305)
Q Consensus       200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A  274 (305)
                      ++++|++|++++++|++|||||||+ +++|+||++++.+ +    +++++++++.++++++|++|+++| |||+|.||+|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a  229 (305)
T TIGR01763       152 RTFIAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPA  229 (305)
T ss_pred             HHHHHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence            9999999999999999999999999 9999999999865 2    344558999999999999999986 6899999999


Q ss_pred             HHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          275 YAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       275 ~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                      +++++++++|++|++   .++|||..
T Consensus       230 ~~~~~i~~ai~~~~~---~v~~~s~~  252 (305)
T TIGR01763       230 ASVVEMVEAILKDRK---RVLPCAAY  252 (305)
T ss_pred             HHHHHHHHHHhCCCC---eEEEEEEE
Confidence            999999999999864   68898754

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-50  Score=380.01  Aligned_cols=243  Identities=34%  Similarity=0.613  Sum_probs=216.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC--CceEEEEecCCCHHHHhCCCCEEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      +.+||+|||| |.||+++|+.++..++. +|+|+|+++  +.++++|+.|...  ....+.. .++|+ ++++|||+||+
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~-~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI~   80 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIVLKNLG-DVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVIV   80 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEEE
Confidence            3469999998 99999999999999984 699999988  5788999999742  1223322 34677 78999999999


Q ss_pred             cCCCCCCCCC-----chhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-eh
Q 021932          121 PAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-ML  194 (305)
Q Consensus       121 ~ag~~~~~g~-----~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t-~L  194 (305)
                      ++|.++++|+     +|.+++..|++++++++++|++++|++++|++|||+|++++.+    ++.+++|++||||+| .|
T Consensus        81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~----~~~sg~p~~rviGlgt~l  156 (321)
T PTZ00082         81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL----QEHSGLPKNKVCGMAGVL  156 (321)
T ss_pred             CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHhcCCChhhEEEecCcc
Confidence            9999999999     9999999999999999999999999999999999999998764    678899999999996 89


Q ss_pred             hhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----------CCChhHHHHHHHHHHhchhhhhcccc
Q 021932          195 DVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKT  264 (305)
Q Consensus       195 ds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~  264 (305)
                      |++|++++||+++++++++|+++|+||||+ ++||+||++++.+          .++++++++|.++++++|++|+++| 
T Consensus       157 ds~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~-  234 (321)
T PTZ00082        157 DSSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL-  234 (321)
T ss_pred             cHHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-
Confidence            999999999999999999999999999999 9999999999854          1455668999999999999999986 


Q ss_pred             CCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          265 GAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       265 gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                      |||+|+||+|.++++++++|++|.   +.++|||..
T Consensus       235 gkg~t~~~ia~a~~~i~~ail~d~---~~v~~vs~~  267 (321)
T PTZ00082        235 GTGSAYFAPAAAAIEMAEAYLKDK---KRVLPCSAY  267 (321)
T ss_pred             CCCccHHHHHHHHHHHHHHHHcCC---CcEEEEEEE
Confidence            789999999999999999999985   489999843

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=3.3e-50  Score=378.76  Aligned_cols=242  Identities=32%  Similarity=0.535  Sum_probs=215.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCc--eEEEEecCCCHHHHhCCCCEEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNA--VVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~--~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      +.+||+|||| |+||+++++.++..++ .+|+|+|+++  +.|+++|+.|.....  ..+. ..++|+ ++++|||+||+
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i-~~~~d~-~~l~~ADiVVi   79 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI-LGTNNY-EDIKDSDVVVI   79 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEE-EeCCCH-HHhCCCCEEEE
Confidence            3459999998 9999999999999997 5899999987  678999999985321  2232 234577 58999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-ehhhHHH
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRA  199 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t-~Lds~R~  199 (305)
                      ++|.++++|++|.|++..|.+++++++++|+++||+++++++|||+|++|+++    ++.+++|++||||+| .||++|+
T Consensus        80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~----~~~s~~p~~rviG~gt~lds~R~  155 (319)
T PTZ00117         80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVF----QEKSGIPSNKICGMAGVLDSSRF  155 (319)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHhhCCCcccEEEecchHHHHHH
Confidence            99999999999999999999999999999999999999999999999998754    667899999999996 8999999


Q ss_pred             HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----------CCChhHHHHHHHHHHhchhhhhccccCCCCc
Q 021932          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (305)
Q Consensus       200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t  269 (305)
                      +++||++++++|++|+++|+||||+ +++|+||++++++          .+++++++++.++++++|++|++++ |||+|
T Consensus       156 ~~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t  233 (319)
T PTZ00117        156 RCNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSA  233 (319)
T ss_pred             HHHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCCh
Confidence            9999999999999999999999999 9999999998854          1455668899999999999999976 78999


Q ss_pred             hhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          270 TLSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       270 ~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      +||+|+++++++++|++|.   +.++|||.
T Consensus       234 ~~~~a~a~~~~~~ail~~~---~~v~~~s~  260 (319)
T PTZ00117        234 FFAPAAAIVAMIEAYLKDE---KRVLVCSV  260 (319)
T ss_pred             HHHHHHHHHHHHHHHhcCC---CeEEEEEE
Confidence            9999999999999999985   57999984

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=3.5e-50  Score=378.79  Aligned_cols=244  Identities=25%  Similarity=0.353  Sum_probs=210.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEE
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~-----el~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiV  118 (305)
                      ||+||||+|+||+++++.|...++++     ||+|+|+++    ++|+++||.|+.... ...+..+++.+++++|||+|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~-~~~~~~~~~~~~~~~~aDiV   79 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPL-LDGVVPTHDPAVAFTDVDVA   79 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchh-cCceeccCChHHHhCCCCEE
Confidence            69999999999999999999988875     799999954    679999999986211 11112233445899999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhh
Q 021932          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDV  196 (305)
Q Consensus       119 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds  196 (305)
                      |++||.|+++|++|.+++..|++++++++++|++++ |+++++++|||+|+|||++    ++.++++|+++||+ |.|||
T Consensus        80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~~~sg~~~~~vig~gt~LDs  155 (324)
T TIGR01758        80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL----SNYAPSIPPKNFSALTRLDH  155 (324)
T ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCcceEEEeeehHH
Confidence            999999999999999999999999999999999996 9999999999999999875    66777888889999 89999


Q ss_pred             HHHHHHHHHHhCCCCccee-EEEEcccCCcceeeccccCCCC-C----C----CChhH--HHHHHHHHHhchhhhhcccc
Q 021932          197 VRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPS-C----S----LTPTE--IDYLTDRIQNGGTEVVEAKT  264 (305)
Q Consensus       197 ~R~~~~la~~l~v~~~~V~-~~vlG~hg~~t~vp~~S~~~v~-~----~----~~~~~--~~~i~~~v~~~g~~i~~~k~  264 (305)
                      +|||++||++++++|++|+ +|||||||+ ++||+||++++. +    +    +++++  +++|.++++++|++|++.| 
T Consensus       156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k-  233 (324)
T TIGR01758       156 NRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR-  233 (324)
T ss_pred             HHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence            9999999999999999996 699999999 999999999997 5    2    22222  5789999999999999975 


Q ss_pred             CCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          265 GAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       265 gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                       +|++.|++|.++++++++|+.+.. ++.++|||..
T Consensus       234 -~~~t~~~ia~~~~~i~~ai~~~~~-~~~i~~vs~~  267 (324)
T TIGR01758       234 -KLSSALSAAKAAVDQMHDWVLGTP-EGTFVSMGVY  267 (324)
T ss_pred             -CCCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEee
Confidence             468999999999999999995432 4579999865

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=3e-49  Score=370.70  Aligned_cols=239  Identities=29%  Similarity=0.470  Sum_probs=214.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC-ceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      |||+|||+ |.||+++|+.|+..++..+|+|+|+++  +.++++|+.|.... ......  ++|+ +++++||+||+++|
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~-~~l~~aDiViita~   76 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDY-ADCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCH-HHhCCCCEEEEccC
Confidence            59999999 999999999999999888999999987  67899999998531 223333  3466 78999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHHH
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~~  202 (305)
                      .++++|++|.+++..|+++++++++.|++++|+++++++|||+|+||+++    ++.+|||++||||+ |.|||+|++++
T Consensus        77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~----~~~sg~p~~~viG~gt~LDs~R~~~~  152 (308)
T cd05292          77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA----YKLSGLPPNRVIGSGTVLDTARFRYL  152 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHeecccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999875    66779999999999 79999999999


Q ss_pred             HHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC------------CCChhHHHHHHHHHHhchhhhhccccCCCCch
Q 021932          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (305)
Q Consensus       203 la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~  270 (305)
                      ||+++++++++|++|||||||+ +++|+||++++++            .++++++++|.++++++|++|++.   ||+|+
T Consensus       153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~---kg~t~  228 (308)
T cd05292         153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIER---KGATY  228 (308)
T ss_pred             HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHc---CCccH
Confidence            9999999999999999999999 9999999998854            123355889999999999999995   58999


Q ss_pred             hHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          271 LSMAYAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       271 ~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                      |++|+++++++++|++|.   +.++||+..
T Consensus       229 ~~~a~a~~~i~~ail~~~---~~v~~~s~~  255 (308)
T cd05292         229 YAIGLALARIVEAILRDE---NSVLTVSSL  255 (308)
T ss_pred             HHHHHHHHHHHHHHHcCC---CcEEEEEEE
Confidence            999999999999999985   579998854

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=8.9e-49  Score=369.66  Aligned_cols=244  Identities=25%  Similarity=0.343  Sum_probs=211.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----CchhhhhhhcccC--CceEEEEecCCCHHHHhC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--NAVVRGFLGQQQLEDALT  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~-----el~L~D~~~----~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~  113 (305)
                      +|.||+||||+|+||+++++.|+..++++     ||+|+|+++    +.|+++|+.|+..  ..++..   .++++++++
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~   77 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK   77 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence            36799999999999999999999988775     999999954    5788999999752  223332   346679999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHh-CCCCCCcEEEe
Q 021932          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV-GTYDPKRLLGV  191 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~-s~~p~~kviG~  191 (305)
                      |||+||++||.+++++++|.+++..|++++++++++|++++ |+++++++|||+|+|||++    ++. +++|+++ ||+
T Consensus        78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~~~~~~~~~-ig~  152 (325)
T cd01336          78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL----LKYAPSIPKEN-FTA  152 (325)
T ss_pred             CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH----HHHcCCCCHHH-EEe
Confidence            99999999999999999999999999999999999999997 8999999999999999875    555 5788888 777


Q ss_pred             -eehhhHHHHHHHHHHhCCCCccee-EEEEcccCCcceeeccccCCCC----C-C----CChhH--HHHHHHHHHhchhh
Q 021932          192 -TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPS----C-S----LTPTE--IDYLTDRIQNGGTE  258 (305)
Q Consensus       192 -t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~hg~~t~vp~~S~~~v~----~-~----~~~~~--~~~i~~~v~~~g~~  258 (305)
                       |.||++||++++|++|++++++|+ .+||||||+ +++|+||++++.    + +    +++++  +++|.++++++|++
T Consensus       153 gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~  231 (325)
T cd01336         153 LTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAA  231 (325)
T ss_pred             eehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHH
Confidence             899999999999999999999997 569999999 999999999986    4 2    23332  58999999999999


Q ss_pred             hhccccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          259 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       259 i~~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                      |+++|  ||+|+||+|.++++++++|++|.. ++.++|||..
T Consensus       232 Ii~~~--~g~t~~~~a~~~~~i~~ail~~~~-~~~v~~vs~~  270 (325)
T cd01336         232 VIKAR--KLSSAMSAAKAICDHVHDWWFGTP-EGEFVSMGVY  270 (325)
T ss_pred             HHHcc--ccchHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEe
Confidence            99964  589999999999999999999852 3568888653

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=8.6e-48  Score=360.88  Aligned_cols=241  Identities=27%  Similarity=0.434  Sum_probs=212.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----CchhhhhhhcccCC--ceEEEEecCCCHHHHhCCCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~----~~g~~~DL~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      |||+|+||+|.+|+++++.|+..|+..||+|+|+++    +++.++|+.|....  ...+.. .++|+ +++++||+||+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~-~~~d~-~~l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK-ISSDL-SDVAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEE-ECCCH-HHhCCCCEEEE
Confidence            699999988999999999999999988999999954    58889999987421  122322 23465 67999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHH
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~  199 (305)
                      ++|.|+++|++|.+++..|+++++++++.|.+++|++++++++||+|++|+++    ++.+++|++||||+ |.|||+|+
T Consensus        79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~----~~~~g~~~~~viG~gt~LDs~R~  154 (309)
T cd05294          79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA----LKESGFDKNRVFGLGTHLDSLRF  154 (309)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCCHHHEeeccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999765    67789999999999 68999999


Q ss_pred             HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C----C--ChhHHHHHHHHHHhchhhhhccccCCCCchhH
Q 021932          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----L--TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS  272 (305)
Q Consensus       200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~----~--~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s  272 (305)
                      +++||++|++++++|+++|+||||+ +++|+||++++.+ +    +  .+.+++++.++++++|++|++.|   |+++||
T Consensus       155 ~~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~k---g~t~~~  230 (309)
T cd05294         155 KVAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLK---GGSEYG  230 (309)
T ss_pred             HHHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhc---CCchhh
Confidence            9999999999999999999999999 9999999999865 1    2  24457899999999999999964   778999


Q ss_pred             HHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          273 MAYAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       273 ~A~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                      +|.++++++++|+.|++   .+++|+..
T Consensus       231 ~a~~~~~ii~ail~~~~---~v~~vsv~  255 (309)
T cd05294         231 PASAISNLVRTIANDER---RILTVSTY  255 (309)
T ss_pred             HHHHHHHHHHHHHCCCC---eEEEEEEE
Confidence            99999999999998864   68887653

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=1.4e-47  Score=358.18  Aligned_cols=238  Identities=36%  Similarity=0.613  Sum_probs=212.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC--CceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      |+|||| |.||+++|+.++..++. ||+|+|+++  +++.++|+.|...  ....+.. .++|+ ++++|||+||+++|.
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~-~t~d~-~~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVT-GTNDY-EDIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE-EcCCH-HHhCCCCEEEEecCC
Confidence            689999 99999999999999988 999999988  5778888888642  1222322 24565 789999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-ehhhHHHHHHH
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFV  203 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t-~Lds~R~~~~l  203 (305)
                      |+++|++|.+++.+|++++++++++|++++|+++++++|||+|++|+++    ++.+++||+||||+| .||++|++++|
T Consensus        77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~----~~~s~~~~~rviGlgt~lds~r~~~~l  152 (300)
T cd01339          77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA----YKASGFPRNRVIGMAGVLDSARFRYFI  152 (300)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCHHHEEEecchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998765    567899999999996 89999999999


Q ss_pred             HHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C----CChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHH
Q 021932          204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA  278 (305)
Q Consensus       204 a~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~  278 (305)
                      |++|++++++|+++|+||||+ +++|+||++++++ +    +++++++++.++++++|++|++.| |||+|+|++|.+++
T Consensus       153 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~  230 (300)
T cd01339         153 AEELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA  230 (300)
T ss_pred             HHHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence            999999999999999999999 9999999999864 2    445568999999999999999987 77999999999999


Q ss_pred             HHHHHHHccCCCCCceeEEEE
Q 021932          279 KFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       279 ~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      +++++|++|+   +.++||+.
T Consensus       231 ~i~~ail~~~---~~i~~~s~  248 (300)
T cd01339         231 EMVEAILKDK---KRVLPCSA  248 (300)
T ss_pred             HHHHHHHcCC---CcEEEEEE
Confidence            9999999985   48999984

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=5.3e-47  Score=354.92  Aligned_cols=241  Identities=35%  Similarity=0.600  Sum_probs=213.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC--ceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      ++||+|||| |+||+++|+.++..++. ||+|+|+++  +++.++|+.|....  ...+. ..++|+ +++++||+||++
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i-~~~~d~-~~~~~aDiVii~   77 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKI-TGTNDY-EDIAGSDVVVIT   77 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEE-EeCCCH-HHHCCCCEEEEC
Confidence            469999999 99999999999999988 999999987  67888898886421  12222 224577 789999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-ehhhHHHH
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRAN  200 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t-~Lds~R~~  200 (305)
                      +|.|+++|++|.|++.+|++++++++++|++++|+++++++|||+|++|+++    ++.+++|++||||+| .|||+||+
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~----~~~s~~~~~~viG~gt~lds~r~~  153 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFR  153 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCcccEEEeCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999999865    567899999999995 89999999


Q ss_pred             HHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C----CChhHHHHHHHHHHhchhhhhccccCCCCchhHHHH
Q 021932          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAY  275 (305)
Q Consensus       201 ~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~  275 (305)
                      ++||++++++|++|+++|+||||+ +++|+||++++.+ +    ++++.+++|.+++++++++|++.+ +|+++.|++|.
T Consensus       154 ~~la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~  231 (307)
T PRK06223        154 TFIAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA  231 (307)
T ss_pred             HHHHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence            999999999999999999999999 9999999998854 2    445557899999999999999974 57899999999


Q ss_pred             HHHHHHHHHHccCCCCCceeEEEE
Q 021932          276 AAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       276 a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      ++++++++|+.|.   +.+++|+.
T Consensus       232 ~~~~ii~ail~~~---~~~~~~~v  252 (307)
T PRK06223        232 SIAEMVEAILKDK---KRVLPCSA  252 (307)
T ss_pred             HHHHHHHHHHcCC---CcEEEEEE
Confidence            9999999999875   47888874

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=1.4e-47  Score=371.50  Aligned_cols=240  Identities=15%  Similarity=0.141  Sum_probs=206.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCC--C--CchhhhhhhcccC-C-ceEEEEecCCCHHHHhCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV--N--TPGVTADISHMDT-N-AVVRGFLGQQQLEDALTG  114 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~-----~el~L~D~~--~--~~g~~~DL~~~~~-~-~~v~~~~~t~d~~~al~~  114 (305)
                      +.+|+|+||+|++|+++.+.++....+     -.|+|+|+.  +  ++|++|||+|+.. . ..+...  +++ +++++|
T Consensus       123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~--~~~-~ea~~d  199 (452)
T cd05295         123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT--TDL-DVAFKD  199 (452)
T ss_pred             ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE--ECC-HHHhCC
Confidence            459999999999999999999986432     379999994  3  7999999999862 1 234433  234 599999


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC--CcEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEEe
Q 021932          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP--KAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (305)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p--~aiviv~tNPvd~lt~~~~~~~~~~s-~~p~~kviG~  191 (305)
                      ||+||+++|.|+++||+|.|++..|++|+++++++|.+++|  +++++++|||+|++|+++    ++.+ ++|++||||+
T Consensus       200 aDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~----~k~apgiP~~rVig~  275 (452)
T cd05295         200 AHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL----IKYAPSIPRKNIIAV  275 (452)
T ss_pred             CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEe
Confidence            99999999999999999999999999999999999999999  899999999999999876    4455 9999999999


Q ss_pred             eehhhHHHHHHHHHHhCCCCcce-eEEEEcccCCcceeeccccCCCCC-------------C----CChhH--HHHHHHH
Q 021932          192 TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSC-------------S----LTPTE--IDYLTDR  251 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V-~~~vlG~hg~~t~vp~~S~~~v~~-------------~----~~~~~--~~~i~~~  251 (305)
                      +.||++|++++||+++|+++++| +++||||||+ ++||+||++++.+             +    +++++  .+++.+.
T Consensus       276 gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~  354 (452)
T cd05295         276 ARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVAT  354 (452)
T ss_pred             cchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHH
Confidence            88999999999999999999999 5799999999 9999999999853             1    23334  3678889


Q ss_pred             HHhchhhhhccccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          252 IQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       252 v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                      ++++++   +   +||+|.||+|.|+++++++|++|++ ++.+++||..
T Consensus       355 v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t~-~~~ilsvsv~  396 (452)
T cd05295         355 LKSLSS---S---LNHEAAISPAHAIATTLSYWYHGSP-PGEIFSLGVI  396 (452)
T ss_pred             HHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEe
Confidence            999988   3   4689999999999999999999975 4568998754

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=7.1e-47  Score=353.54  Aligned_cols=216  Identities=24%  Similarity=0.360  Sum_probs=189.4

Q ss_pred             EEEEEeCCC----CchhhhhhhcccC-C-ceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHH
Q 021932           74 VLHLYDVVN----TPGVTADISHMDT-N-AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLC  147 (305)
Q Consensus        74 el~L~D~~~----~~g~~~DL~~~~~-~-~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~  147 (305)
                      .|+|+|+++    ++|+++||.|+.. . ..++.   +++.+++++|||+||++||.|+++|++|.|++..|++++++++
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~   91 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA   91 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            899999976    6899999999862 2 23332   2453589999999999999999999999999999999999999


Q ss_pred             HHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHHHHHHHhCCCCcce-eEEEEcccCC
Q 021932          148 EGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAG  224 (305)
Q Consensus       148 ~~I~~~-~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~~la~~l~v~~~~V-~~~vlG~hg~  224 (305)
                      ++|+++ +|+++++++|||+|+|||++    ++.+++|++|+||+ |.|||+||+++||+++++++++| ++|||||||+
T Consensus        92 ~~i~~~~~p~aivivvsNPvDv~t~~~----~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~  167 (309)
T PLN00135         92 SALEKHAAPDCKVLVVANPANTNALIL----KEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS  167 (309)
T ss_pred             HHHHHhcCCCeEEEEeCCcHHHHHHHH----HHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence            999996 89999999999999999875    66789999999999 89999999999999999999999 6999999999


Q ss_pred             cceeeccccCCC----CC-C----CChhH--HHHHHHHHHhchhhhhccccCCCCchhHHHHHHHHHHHHHHccCCCCCc
Q 021932          225 VTILPLLSQVKP----SC-S----LTPTE--IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAG  293 (305)
Q Consensus       225 ~t~vp~~S~~~v----~~-~----~~~~~--~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~  293 (305)
                       ++||+||++++    ++ +    +++++  +++|.++++++|++|+++|  ||+|+||+|.++++++++|++++ .++.
T Consensus       168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ai~~~~-~~~~  243 (309)
T PLN00135        168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLGT-PEGT  243 (309)
T ss_pred             -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHhCC-cCCe
Confidence             99999999999    54 2    23334  5789999999999999964  68999999999999999999964 2467


Q ss_pred             eeEEEEE
Q 021932          294 VIECAYV  300 (305)
Q Consensus       294 i~~~a~v  300 (305)
                      ++|||..
T Consensus       244 v~~vsv~  250 (309)
T PLN00135        244 WVSMGVY  250 (309)
T ss_pred             EEEEEEE
Confidence            8888754

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=1.6e-45  Score=345.09  Aligned_cols=221  Identities=23%  Similarity=0.298  Sum_probs=189.5

Q ss_pred             hCCCCcEEEEEeCCC----CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHH
Q 021932           68 INPLVSVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIV  143 (305)
Q Consensus        68 ~~~~~~el~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~  143 (305)
                      .+++  .|+|+|+++    ++|+++||.|+. .+.......++|++++++|||+||++||.|+++|++|+|++..|++++
T Consensus        13 ~~~~--~l~L~D~~~~~~~a~g~a~Dl~d~~-~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~   89 (313)
T TIGR01756        13 NRPV--CLHLLEIPPALNRLEALAMELEDCA-FPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIF   89 (313)
T ss_pred             CCeE--EEEEecCCCccchhHhHHHHHHHhc-cccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence            3445  899999976    689999999997 332211112357778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHHHHHHHhCCCCcceeE-EEEc
Q 021932          144 KTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV-PVVG  220 (305)
Q Consensus       144 ~~i~~~I~~~~p-~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~~la~~l~v~~~~V~~-~vlG  220 (305)
                      ++++++|++++| ++++|++|||+|+|||++.   ++.+|+|++ +||+ |.|||+||+++||++++++|++|+. +|||
T Consensus        90 ~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~---~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~G  165 (313)
T TIGR01756        90 KATGEALSEYAKPTVKVLVIGNPVNTNCLVAM---LHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWG  165 (313)
T ss_pred             HHHHHHHHhhCCCCeEEEEeCCchHHHHHHHH---HHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEE
Confidence            999999999995 5889999999999998752   578999999 9999 8999999999999999999999965 5999


Q ss_pred             ccCCcceeeccccCCC--CC-C------CChh-HHHHHHHHHHhchhhhhccccCCCCchhHHH-HHHHHHHHHHHccCC
Q 021932          221 GHAGVTILPLLSQVKP--SC-S------LTPT-EIDYLTDRIQNGGTEVVEAKTGAGSATLSMA-YAAAKFADACLRGLR  289 (305)
Q Consensus       221 ~hg~~t~vp~~S~~~v--~~-~------~~~~-~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A-~a~~~~~~ai~~~~~  289 (305)
                      |||+ +++|+||++++  .+ +      ++++ .++++.++++++|++|++.   ||+|+|++| .++++++++|++|.+
T Consensus       166 eHG~-s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kg~t~~~~~a~ai~~iv~ail~~~~  241 (313)
T TIGR01756       166 NHAE-SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEM---RGFTSAASPVKASLQHMKAWLFGTR  241 (313)
T ss_pred             CCCC-ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhC---cCCcchHHHHHHHHHHHHHHhcCCC
Confidence            9999 99999999999  54 1      2331 3679999999999999995   589999988 699999999999754


Q ss_pred             CCCceeEEEEE
Q 021932          290 GDAGVIECAYV  300 (305)
Q Consensus       290 ~~~~i~~~a~v  300 (305)
                       ++.++|||.+
T Consensus       242 -~~~i~pvsv~  251 (313)
T TIGR01756       242 -PGEVLSMGIP  251 (313)
T ss_pred             -CCeEEEEEEE
Confidence             5579999874

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=1.5e-41  Score=311.80  Aligned_cols=205  Identities=32%  Similarity=0.485  Sum_probs=183.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCC--CchhhhhhhcccCCc-eEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVN--TPGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~--~~~el~L~D~~~--~~g~~~DL~~~~~~~-~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      |+||||+|.+|+++++.|+..+  ...||+|+|+++  +++.++|++|..... ..+.. .++|++++++|||+||+++|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCC
Confidence            6899998999999999999999  778999999987  788999999986332 23332 35677799999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHH
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV  203 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~l  203 (305)
                      .++++|++|.+++.+|++++++++++|+++||++|++++|||+|++|+++    ++.+|+|++||||+|.||++|+++++
T Consensus        80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~----~~~sg~~~~kviG~~~ld~~r~~~~l  155 (263)
T cd00650          80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV----WRYSGLPKEKVIGLGTLDPIRFRRIL  155 (263)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCchhEEEeecchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998765    66779999999999669999999999


Q ss_pred             HHHhCCCCcceeEEEEcccCCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHHHHHHH
Q 021932          204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA  283 (305)
Q Consensus       204 a~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~a  283 (305)
                      |+++++++++|+++|||+||+ +++|+||+++                                     +|.++++++++
T Consensus       156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~-------------------------------------~a~~~~~ii~a  197 (263)
T cd00650         156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR-------------------------------------IATSIADLIRS  197 (263)
T ss_pred             HHHhCCCccceEEEEEEcCCC-ceEeccccch-------------------------------------HHHHHHHHHHH
Confidence            999999999999999999999 8999999754                                     78999999999


Q ss_pred             HHccCCCCCceeEEEE
Q 021932          284 CLRGLRGDAGVIECAY  299 (305)
Q Consensus       284 i~~~~~~~~~i~~~a~  299 (305)
                      |++|.   +.+++|+.
T Consensus       198 i~~~~---~~~~~v~v  210 (263)
T cd00650         198 LLNDE---GEILPVGV  210 (263)
T ss_pred             HHcCC---CEEEEEEE
Confidence            99984   46777754

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=4.1e-38  Score=277.66  Aligned_cols=249  Identities=26%  Similarity=0.365  Sum_probs=218.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEeCCC----CchhhhhhhcccCCceEEEEecCCCHHHHhCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~-----~~~el~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~a  115 (305)
                      ++.+|.|.||+|++|+++.+.++...     -...++|+|+.+    ++|..|+|+|+. ++.++.+..++|..++|+|.
T Consensus         3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a-~PlL~~Vvattd~~~afkdv   81 (332)
T KOG1496|consen    3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCA-LPLLKGVVATTDEVEAFKDV   81 (332)
T ss_pred             CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhh-hhHHHhhhcccChhhhhccC
Confidence            45699999999999999999998642     124899999976    689999999997 67777655567888999999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeh
Q 021932          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML  194 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~L  194 (305)
                      |+.|+..++||++||+|.|++..|.+|++..+..+++|+ |+..++++.||+|..+.++.   +.+..+|.+++-.+|.|
T Consensus        82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTRL  158 (332)
T KOG1496|consen   82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTRL  158 (332)
T ss_pred             cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhhh
Confidence            999999999999999999999999999999999999999 89999999999999987765   45678999999999999


Q ss_pred             hhHHHHHHHHHHhCCCCcce-eEEEEcccCCcceeeccccCCCCC---------CCChhHH--HHHHHHHHhchhhhhcc
Q 021932          195 DVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSC---------SLTPTEI--DYLTDRIQNGGTEVVEA  262 (305)
Q Consensus       195 ds~R~~~~la~~l~v~~~~V-~~~vlG~hg~~t~vp~~S~~~v~~---------~~~~~~~--~~i~~~v~~~g~~i~~~  262 (305)
                      |++|+..+||.++||+.++| ++.+||+|+. ||+|+.-+++++.         .+.++.|  .++.+.|+++|..+++.
T Consensus       159 DhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a  237 (332)
T KOG1496|consen  159 DHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA  237 (332)
T ss_pred             chhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence            99999999999999999999 5999999998 9999999999852         1456666  58999999999999996


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEEee
Q 021932          263 KTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS  302 (305)
Q Consensus       263 k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~s  302 (305)
                      +  |-++.+|.|.+++++++.|+.+.+ +...++- -|.|
T Consensus       238 r--k~SSA~SaA~aacDhi~dw~~gTp-eG~fvSm-gV~s  273 (332)
T KOG1496|consen  238 R--KLSSAMSAAKAACDHIRDWWFGTP-EGTFVSM-GVYS  273 (332)
T ss_pred             h--hhhhhhhHHHhHhhhhhheecCCC-CccEEEE-eeec
Confidence            5  789999999999999999999987 3334433 4454

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=2e-34  Score=241.41  Aligned_cols=139  Identities=40%  Similarity=0.631  Sum_probs=123.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      |||+||||+|.||+++++.|+++++++||+|+|+++  ++|+++||+|..............+ +++++|||+||+++|.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~~aDivvitag~   79 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD-YEALKDADIVVITAGV   79 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS-GGGGTTESEEEETTST
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc-ccccccccEEEEeccc
Confidence            699999999999999999999999999999999986  7999999999875432332222345 4899999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG  190 (305)
                      ++++|++|.+++..|++++++++++|++++|+++++++|||+|+||+++    ++.+++||+|+||
T Consensus        80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~~----~~~s~~~~~kviG  141 (141)
T PF00056_consen   80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYVA----QKYSGFPPNKVIG  141 (141)
T ss_dssp             SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHHH----HHHHTSSGGGEEE
T ss_pred             cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHHH----HHhhCcCcccCcC
Confidence            9999999999999999999999999999999999999999999998764    7788999999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK15076 alpha-galactosidase; Provisional

Probab=99.93  E-value=2.8e-25  Score=216.92  Aligned_cols=164  Identities=21%  Similarity=0.287  Sum_probs=130.4

Q ss_pred             CEEEEEcCCCchHHHHHH--HHH-hCCCC-cEEEEEeCCC--Cc-hhhhhhhccc--CCceEEEEecCCCHHHHhCCCCE
Q 021932           47 FKVAVLGAAGGIGQPLAM--LMK-INPLV-SVLHLYDVVN--TP-GVTADISHMD--TNAVVRGFLGQQQLEDALTGMDI  117 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~--~L~-~~~~~-~el~L~D~~~--~~-g~~~DL~~~~--~~~~v~~~~~t~d~~~al~~aDi  117 (305)
                      +||+|||| |.+|.+.++  .++ ..++. .||+|+|+++  ++ +.++ +.+..  .....+.. .++|++++++|||+
T Consensus         2 ~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dADf   78 (431)
T PRK15076          2 PKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGADY   78 (431)
T ss_pred             cEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCCE
Confidence            69999999 999998877  555 34554 4999999987  33 3333 44432  12233332 35688899999999


Q ss_pred             EEEcCCCC-CCCC--------------CchhhH--------HHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHH
Q 021932          118 VIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA  174 (305)
Q Consensus       118 VIi~ag~~-~~~g--------------~~r~d~--------~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~  174 (305)
                      ||++++.+ .+++              ++|.|.        +.+|++++++++++|+++||+||+|++|||+|++|+.+ 
T Consensus        79 Vv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~-  157 (431)
T PRK15076         79 VINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM-  157 (431)
T ss_pred             EeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-
Confidence            99999986 4445              556677        89999999999999999999999999999999998654 


Q ss_pred             HHHHHhCCCCCCcEEEee--ehhhHHHHHHHHHHhCCCCcceeEEEEc-ccC
Q 021932          175 EVFKKVGTYDPKRLLGVT--MLDVVRANTFVAEVLGLDPREVDVPVVG-GHA  223 (305)
Q Consensus       175 ~~~~~~s~~p~~kviG~t--~Lds~R~~~~la~~l~v~~~~V~~~vlG-~hg  223 (305)
                         +   ++|+.||||+|  .+|+.   +.+|+.+|+++++|++++.| +|-
T Consensus       158 ---~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~  200 (431)
T PRK15076        158 ---N---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHM  200 (431)
T ss_pred             ---h---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecch
Confidence               3   68889999997  47875   78999999999999999999 553

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=99.93  E-value=7.2e-25  Score=213.49  Aligned_cols=177  Identities=23%  Similarity=0.257  Sum_probs=133.5

Q ss_pred             CEEEEEcCCCch-HHHHHHHHHhCC--C-CcEEEEEeCCC--C---chhhhhhhcccCCceEEEEecCCCHHHHhCCCCE
Q 021932           47 FKVAVLGAAGGI-GQPLAMLMKINP--L-VSVLHLYDVVN--T---PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDI  117 (305)
Q Consensus        47 ~KI~IIGaaG~V-Gs~la~~L~~~~--~-~~el~L~D~~~--~---~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDi  117 (305)
                      +||+|||| |+. .-.+...|+...  + .+||+|+|+++  +   ...+..+.+.. ...++.. .|+|+++|++|||+
T Consensus         1 ~KI~iIGg-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~-~ttD~~~Al~gADf   77 (425)
T cd05197           1 VKIAIIGG-GSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFE-KTMDLEDAIIDADF   77 (425)
T ss_pred             CEEEEECC-chHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCCCCE
Confidence            59999999 654 112333444433  3 58999999987  2   12223333322 3345543 36799999999999


Q ss_pred             EEEcCCCC------------CCCCCc--------hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHH
Q 021932          118 VIIPAGVP------------RKPGMT--------RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF  177 (305)
Q Consensus       118 VIi~ag~~------------~~~g~~--------r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~  177 (305)
                      ||.+..+.            .+.|..        ..-...+|+++++++++.|+++||+||+|++|||+|++|+.+    
T Consensus        78 Vi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~----  153 (425)
T cd05197          78 VINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV----  153 (425)
T ss_pred             EEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH----
Confidence            99986432            233211        233456899999999999999999999999999999998765    


Q ss_pred             HHhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCCcceeEEEEc-ccCCcceeeccccCCCCC
Q 021932          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHAGVTILPLLSQVKPSC  238 (305)
Q Consensus       178 ~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~vlG-~hg~~t~vp~~S~~~v~~  238 (305)
                      ++.  +|+.||||+|+. +.|+++.+|+.+|+++++|+++++| |||     |+||++++.+
T Consensus       154 ~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg-----~~~s~~~~~G  207 (425)
T cd05197         154 RRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHG-----IWLNRVRYNG  207 (425)
T ss_pred             HHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCe-----EeeEeEEECC
Confidence            454  478999999877 9999999999999999999999999 998     7899988754

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=99.91  E-value=1.1e-23  Score=204.76  Aligned_cols=167  Identities=20%  Similarity=0.283  Sum_probs=128.1

Q ss_pred             CEEEEEcCCCchHH-HHHHHHHhC-C-C-CcEEEEEeCC-C--Cc---hhhhhhhcccCCceEEEEecCCCHHHHhCCCC
Q 021932           47 FKVAVLGAAGGIGQ-PLAMLMKIN-P-L-VSVLHLYDVV-N--TP---GVTADISHMDTNAVVRGFLGQQQLEDALTGMD  116 (305)
Q Consensus        47 ~KI~IIGaaG~VGs-~la~~L~~~-~-~-~~el~L~D~~-~--~~---g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aD  116 (305)
                      +||+|||| |++-. .+...|+.. . + .+||+|+|++ +  +.   ..+..+.... ...++.. .++|+++|++|||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v~-~t~d~~~al~gad   77 (419)
T cd05296           1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKVH-LTTDRREALEGAD   77 (419)
T ss_pred             CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCCCC
Confidence            59999999 76532 233444442 2 3 5899999999 5  21   1122222221 3345543 3679999999999


Q ss_pred             EEEEcCCCCCCCCCchhh--------------------HHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 021932          117 IVIIPAGVPRKPGMTRDD--------------------LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (305)
Q Consensus       117 iVIi~ag~~~~~g~~r~d--------------------~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~  176 (305)
                      +||+++++++.+++++.+                    ...+|++++++++++|+++||+||+|++|||+|++|+.+   
T Consensus        78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~---  154 (419)
T cd05296          78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV---  154 (419)
T ss_pred             EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH---
Confidence            999999887766665554                    267899999999999999999999999999999998654   


Q ss_pred             HHHhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCCcceeEEEEc-ccCC
Q 021932          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHAG  224 (305)
Q Consensus       177 ~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~vlG-~hg~  224 (305)
                       ++.+   +.||||+|+.+ .|+++.+|+.+|+++++|+++++| +|-.
T Consensus       155 -~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH~~  198 (419)
T cd05296         155 -LRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNHLG  198 (419)
T ss_pred             -HHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEecccce
Confidence             5544   78999999874 899999999999999999999999 7754

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.87  E-value=1.2e-21  Score=191.27  Aligned_cols=167  Identities=22%  Similarity=0.223  Sum_probs=129.6

Q ss_pred             CEEEEEcCCCchHHHHHH--HHHhC-CCC-cEEEEEeCCC--Cchhhhhhhccc--CCceEEEEecCCCHHHHhCCCCEE
Q 021932           47 FKVAVLGAAGGIGQPLAM--LMKIN-PLV-SVLHLYDVVN--TPGVTADISHMD--TNAVVRGFLGQQQLEDALTGMDIV  118 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~--~L~~~-~~~-~el~L~D~~~--~~g~~~DL~~~~--~~~~v~~~~~t~d~~~al~~aDiV  118 (305)
                      +||+|||| |.+|++.+.  .++.. .+. .+|+|+|+++  ++....++.+..  .....+.. .++|++++++|||+|
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~-~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIE-ATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE-EeCCHHHHhcCCCEE
Confidence            48999999 999999876  35433 332 4999999987  344444444432  11223322 256888999999999


Q ss_pred             EEcCCCCCCCCCch----------------------hhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 021932          119 IIPAGVPRKPGMTR----------------------DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (305)
Q Consensus       119 Ii~ag~~~~~g~~r----------------------~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~  176 (305)
                      |++++....++.++                      .....+|+++++++++.+.++||++|++++|||++++|+.+   
T Consensus        79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~---  155 (423)
T cd05297          79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL---  155 (423)
T ss_pred             EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH---
Confidence            99998665555444                      34567899999999999999999999999999999998764   


Q ss_pred             HHHhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCCcceeEEEEc-ccC
Q 021932          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHA  223 (305)
Q Consensus       177 ~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~vlG-~hg  223 (305)
                       ++.++   .|+||+|+- +.|+++.+|+.+++++++|+++++| +|.
T Consensus       156 -~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~  198 (423)
T cd05297         156 -NRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHM  198 (423)
T ss_pred             -HHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccH
Confidence             55554   799999865 7889999999999999999999999 553

linked to 3D####ucture

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.87  E-value=4.6e-22  Score=172.05  Aligned_cols=104  Identities=35%  Similarity=0.538  Sum_probs=94.1

Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-----------CCChhHHHHHHHHHHhchhhhh
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVV  260 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~g~~i~  260 (305)
                      |.|||+||+++||+++|++|+++++|||||||+ ++||+||++++.+           .++++++++|.++++++|++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence            679999999999999999999999999999999 9999999999853           3566778999999999999999


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEEe
Q 021932          261 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVA  301 (305)
Q Consensus       261 ~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~  301 (305)
                      +.|.  |+++||+|.++++++++|++|+   +.++||+.+.
T Consensus        80 ~~k~--g~t~~s~A~a~~~~v~ail~~~---~~i~~~sv~~  115 (174)
T PF02866_consen   80 KAKG--GSTSYSIAAAAARIVEAILKDE---RRILPVSVYL  115 (174)
T ss_dssp             HHHS--SSCHHHHHHHHHHHHHHHHTTH---TEEEEEEEEE
T ss_pred             eecc--ccCcCCHHHHHHHHHHHHhhcc---cccccceecc
Confidence            9862  8999999999999999999997   4788887653

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.84  E-value=2.7e-20  Score=181.88  Aligned_cols=166  Identities=20%  Similarity=0.283  Sum_probs=121.5

Q ss_pred             CEEEEEcCCCch-HHHHHHHHHhC--CC-CcEEEEEeCCC--C---chhhhhhhcccCCceEEEEecCCCHHHHhCCCCE
Q 021932           47 FKVAVLGAAGGI-GQPLAMLMKIN--PL-VSVLHLYDVVN--T---PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDI  117 (305)
Q Consensus        47 ~KI~IIGaaG~V-Gs~la~~L~~~--~~-~~el~L~D~~~--~---~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDi  117 (305)
                      |||+|||| |++ +..+...|++.  .+ .+||+|+|+++  +   ...+..+.... ...+++. .|+|+++|++|||+
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~-~Ttdr~eAl~gADf   77 (437)
T cd05298           1 FKIVIAGG-GSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFV-YTTDPEEAFTDADF   77 (437)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEE-EECCHHHHhCCCCE
Confidence            69999999 654 11233444444  23 48999999998  2   12222333222 2345543 36799999999999


Q ss_pred             EEEcCCCC------------CCCCC---c-----hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHH
Q 021932          118 VIIPAGVP------------RKPGM---T-----RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF  177 (305)
Q Consensus       118 VIi~ag~~------------~~~g~---~-----r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~  177 (305)
                      ||.+..+.            .+.|.   +     -.-...+|++++++++++|+++||+||+|++|||+|++|+.+    
T Consensus        78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~----  153 (437)
T cd05298          78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL----  153 (437)
T ss_pred             EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----
Confidence            99986432            23331   1     223467899999999999999999999999999999998765    


Q ss_pred             HHhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCCcceeEEEEc-cc
Q 021932          178 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GH  222 (305)
Q Consensus       178 ~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~vlG-~h  222 (305)
                      ++.  +|+.||||+|+-... ++..+|+.||+++++++..+.| +|
T Consensus       154 ~~~--~~~~kviGlC~~~~~-~~~~la~~lg~~~~~v~~~~~GlNH  196 (437)
T cd05298         154 RRL--FPNARILNICDMPIA-IMDSMAAILGLDRKDLEPDYFGLNH  196 (437)
T ss_pred             HHH--CCCCCEEEECCcHHH-HHHHHHHHhCCCHHHceEEEEeecc
Confidence            443  788999999976543 6788999999999999999999 44

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.79  E-value=2.6e-18  Score=149.17  Aligned_cols=152  Identities=20%  Similarity=0.233  Sum_probs=102.8

Q ss_pred             EEEEEcCCCchHHHHH--HHHHhCC-C-CcEEEEEeCCC--C---chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEE
Q 021932           48 KVAVLGAAGGIGQPLA--MLMKINP-L-VSVLHLYDVVN--T---PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (305)
Q Consensus        48 KI~IIGaaG~VGs~la--~~L~~~~-~-~~el~L~D~~~--~---~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiV  118 (305)
                      ||+|||| |++-.+..  ..+...+ + .+||+|+|+++  +   ...+..+.... ...++.. .++|+++|++|||+|
T Consensus         1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-~~~~~v~-~ttd~~eAl~gADfV   77 (183)
T PF02056_consen    1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-GADLKVE-ATTDRREALEGADFV   77 (183)
T ss_dssp             EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-TTSSEEE-EESSHHHHHTTESEE
T ss_pred             CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-CCCeEEE-EeCCHHHHhCCCCEE
Confidence            8999999 88765543  2333333 3 46999999997  1   12222333222 3344432 357999999999999


Q ss_pred             EEcCCC------------CCCCCCc----------hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 021932          119 IIPAGV------------PRKPGMT----------RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (305)
Q Consensus       119 Ii~ag~------------~~~~g~~----------r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~  176 (305)
                      |.+..+            |.+.|..          -.....++++.+.++++.|+++|||||++|+|||+.++|..+   
T Consensus        78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~---  154 (183)
T PF02056_consen   78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL---  154 (183)
T ss_dssp             EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH---
T ss_pred             EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH---
Confidence            998642            4444422          233467899999999999999999999999999999987654   


Q ss_pred             HHHhCCCCCCcEEEeeehhhHHHHHHHHHHhCC
Q 021932          177 FKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGL  209 (305)
Q Consensus       177 ~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v  209 (305)
                       .+.  +|..|++|+|+-.. -+...+|+.||+
T Consensus       155 -~r~--~~~~k~vGlCh~~~-~~~~~la~~L~~  183 (183)
T PF02056_consen  155 -SRY--TPKIKVVGLCHGPQ-GTRRQLAKLLGM  183 (183)
T ss_dssp             -HHH--STTSEEEEE-SHHH-HHHHHHHHHHT-
T ss_pred             -HHh--CCCCCEEEECCCHH-HHHHHHHHHhCc
Confidence             443  55689999997654 367789998874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.76  E-value=6.9e-18  Score=162.66  Aligned_cols=169  Identities=24%  Similarity=0.368  Sum_probs=120.5

Q ss_pred             CCCEEEEEcCCCchHHHHHH--HHHhCC-C-CcEEEEEeCCC-Cch----hhhhhhcccCCceEEEEecCCCHHHHhCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAM--LMKINP-L-VSVLHLYDVVN-TPG----VTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~--~L~~~~-~-~~el~L~D~~~-~~g----~~~DL~~~~~~~~v~~~~~t~d~~~al~~a  115 (305)
                      +..||+|||| |+++..-..  .|.+.+ + ..||.|+|+++ ...    .+..+.+.. ...++... ++|.++||+||
T Consensus         2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~-g~~~kv~~-ttd~~eAl~gA   78 (442)
T COG1486           2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEA-GAPVKVEA-TTDRREALEGA   78 (442)
T ss_pred             CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ecCHHHHhcCC
Confidence            3569999999 887665432  333333 2 57999999987 211    122233322 23366543 57899999999


Q ss_pred             CEEEEcCCC------------CCCCCCch--------hhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHH
Q 021932          116 DIVIIPAGV------------PRKPGMTR--------DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE  175 (305)
Q Consensus       116 DiVIi~ag~------------~~~~g~~r--------~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~  175 (305)
                      |+|+.+..+            |.|.|-.+        .-...++++++.+|++.|+++||+||++++|||+.++|..+  
T Consensus        79 dfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeAv--  156 (442)
T COG1486          79 DFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAV--  156 (442)
T ss_pred             CEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHHH--
Confidence            999998632            33443211        12346899999999999999999999999999999887554  


Q ss_pred             HHHHhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCC-cceeEEEEc-ccC
Q 021932          176 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVG-GHA  223 (305)
Q Consensus       176 ~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~-~~V~~~vlG-~hg  223 (305)
                        .+.  +|.-|++|+|+... -....+|+.|++++ ++++.-+.| +|.
T Consensus       157 --~r~--~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGlNH~  201 (442)
T COG1486         157 --RRL--YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGLNHM  201 (442)
T ss_pred             --HHh--CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeechhh
Confidence              443  55449999997543 35788999999976 999999999 553

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.00  E-value=2.2e-08  Score=95.66  Aligned_cols=115  Identities=19%  Similarity=0.313  Sum_probs=85.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC------chh-------hhhhhccc-CCceEEEEecCCCHHHHh
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGV-------TADISHMD-TNAVVRGFLGQQQLEDAL  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~------~g~-------~~DL~~~~-~~~~v~~~~~t~d~~~al  112 (305)
                      |||+|+|. |+||...+..|++.|+  +|+++|+++.      .|.       ..+|.... ...+++.   |+|+++++
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f---Ttd~~~a~   74 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF---TTDYEEAV   74 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE---EcCHHHHH
Confidence            79999998 9999999999999999  9999999871      111       11233221 2335665   57999999


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCC-cEEEEe-cCCCCccHHHH
Q 021932          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLI-SNPVNSTVPIA  173 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~-aiviv~-tNPvd~lt~~~  173 (305)
                      +++|++||+.|+|.++..      ..+...+...++.|.++.+. .++++= |-|+.....+-
T Consensus        75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~  131 (414)
T COG1004          75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVR  131 (414)
T ss_pred             hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHH
Confidence            999999999999987632      22567888999999988876 443333 68888765543

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.98  E-value=1.7e-09  Score=94.05  Aligned_cols=118  Identities=25%  Similarity=0.385  Sum_probs=78.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--C-c--hhhhh-hh---ccc---------CCceEEEEecCCCHH
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-P--GVTAD-IS---HMD---------TNAVVRGFLGQQQLE  109 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~-~--g~~~D-L~---~~~---------~~~~v~~~~~t~d~~  109 (305)
                      ||+|+|+ |.+|..+|..++..|+  +|+|+|.++  + .  ....+ +.   ...         ...+++.   ++|++
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~   74 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE   74 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence            7999999 9999999999999999  999999986  1 1  11111 11   000         1234554   35775


Q ss_pred             HHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcE
Q 021932          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (305)
Q Consensus       110 ~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kv  188 (305)
                      + +.+||+||.+.              .++.++.+++..++++.+ |++++  .||...+-.   +++.. ... .|+|+
T Consensus        75 ~-~~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl~i---~~la~-~~~-~p~R~  132 (180)
T PF02737_consen   75 E-AVDADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSLSI---SELAA-ALS-RPERF  132 (180)
T ss_dssp             G-GCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS-H---HHHHT-TSS-TGGGE
T ss_pred             H-Hhhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCCCH---HHHHh-ccC-cCceE
Confidence            5 55999999985              347899999999999999 68876  788777643   22222 333 46789


Q ss_pred             EEeee
Q 021932          189 LGVTM  193 (305)
Q Consensus       189 iG~t~  193 (305)
                      +|+..
T Consensus       133 ig~Hf  137 (180)
T PF02737_consen  133 IGMHF  137 (180)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99864

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=98.93  E-value=5.1e-09  Score=97.98  Aligned_cols=141  Identities=23%  Similarity=0.294  Sum_probs=97.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--C-chh--hhh----hhccc------CCceEEEEecCCCHHH
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--TAD----ISHMD------TNAVVRGFLGQQQLED  110 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~-~g~--~~D----L~~~~------~~~~v~~~~~t~d~~~  110 (305)
                      .+||+|||| |.+|+.+|+.++..|+  +|+|+|+++  + ++.  ...    +....      ....+..+..++++ .
T Consensus         3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~   78 (307)
T COG1250           3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A   78 (307)
T ss_pred             ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence            469999999 9999999999999778  999999986  1 111  111    11100      01112222234566 5


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEE
Q 021932          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL  189 (305)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kvi  189 (305)
                      ++++||+||.++              .+|.++.+++..++.+++ |++++  .||.+.+...-++    ..+ -.|+|++
T Consensus        79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl~it~ia----~~~-~rper~i  137 (307)
T COG1250          79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSLSITELA----EAL-KRPERFI  137 (307)
T ss_pred             HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCCCHHHHH----HHh-CCchhEE
Confidence            899999999985              568999999999999999 78877  8999987543322    223 4467899


Q ss_pred             Eee-------------------ehhhHHHHHHHHHHhCCCC
Q 021932          190 GVT-------------------MLDVVRANTFVAEVLGLDP  211 (305)
Q Consensus       190 G~t-------------------~Lds~R~~~~la~~l~v~~  211 (305)
                      |+.                   .-++...-..++++++-.|
T Consensus       138 G~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~  178 (307)
T COG1250         138 GLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP  178 (307)
T ss_pred             EEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence            982                   1255555667788887443

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.84  E-value=1.2e-08  Score=89.25  Aligned_cols=125  Identities=22%  Similarity=0.316  Sum_probs=76.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC------chh-------hhhhhccc-CCceEEEEecCCCHHHHh
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGV-------TADISHMD-TNAVVRGFLGQQQLEDAL  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~------~g~-------~~DL~~~~-~~~~v~~~~~t~d~~~al  112 (305)
                      |||+|||. |+||..+|..|+..|+  +|+.+|+++.      .|.       ..++.... ...+++.   ++|+++++
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~ai   74 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEEAI   74 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHHHH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh---hhhhhhhh
Confidence            79999998 9999999999999999  9999999861      111       11122111 1356665   35788889


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHHHHHHHHHhCCC
Q 021932          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKKVGTY  183 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~-tNPvd~lt~~~~~~~~~~s~~  183 (305)
                      ++||++|+|.+.|...+.+      -+...+.+.++.|.++. ++.+|++= |=|+...-.++..++.+.++.
T Consensus        75 ~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~  141 (185)
T PF03721_consen   75 KDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGK  141 (185)
T ss_dssp             HH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCT
T ss_pred             hccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhccc
Confidence            9999999999988765321      13455677777777766 34444433 578887665555666666553

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.83  E-value=4.3e-08  Score=92.76  Aligned_cols=118  Identities=17%  Similarity=0.155  Sum_probs=82.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchh-------hhh-hhcc-----cCCceEEEEecCCCHHHHh
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGV-------TAD-ISHM-----DTNAVVRGFLGQQQLEDAL  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~-------~~D-L~~~-----~~~~~v~~~~~t~d~~~al  112 (305)
                      +||+|||+ |.+|+.+|..++..|+  +|+++|+++ ....       .++ +...     ....+++.   ++++++++
T Consensus         8 ~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~av   81 (321)
T PRK07066          8 KTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEACV   81 (321)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHHh
Confidence            58999999 9999999999999999  999999976 1111       011 1101     01123443   35788899


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      ++||+|+.++              .+|.++.+++...+.+++| ++  |+.||.+.+...   ++ ..... .|+|++|+
T Consensus        82 ~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s---~l-a~~~~-~p~R~~g~  140 (321)
T PRK07066         82 ADADFIQESA--------------PEREALKLELHERISRAAKPDA--IIASSTSGLLPT---DF-YARAT-HPERCVVG  140 (321)
T ss_pred             cCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHH---HH-HHhcC-CcccEEEE
Confidence            9999999985              3478889999999999995 55  457888876542   22 22233 34788886

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.80  E-value=6e-08  Score=90.36  Aligned_cols=120  Identities=18%  Similarity=0.264  Sum_probs=82.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C--chh--h---hh-hhccc---------CCceEEEEecCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--T---AD-ISHMD---------TNAVVRGFLGQQ  106 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~--~g~--~---~D-L~~~~---------~~~~v~~~~~t~  106 (305)
                      +..||+|||+ |.+|..+|..++..|+  +|+++|+++ .  .+.  .   +| +.+..         ...+++.   ++
T Consensus         4 ~~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~---~~   77 (286)
T PRK07819          4 AIQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF---TT   77 (286)
T ss_pred             CccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---eC
Confidence            3459999999 9999999999999999  999999986 1  111  1   11 11110         0123443   45


Q ss_pred             CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 021932          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (305)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~--p~aiviv~tNPvd~lt~~~~~~~~~~s~~p  184 (305)
                      |+ +++++||+||.++              .++.++.+++...+++.+  |++++  +||-.......+    .....+ 
T Consensus        78 ~~-~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~~~~l----a~~~~~-  135 (286)
T PRK07819         78 DL-GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIPIMKL----AAATKR-  135 (286)
T ss_pred             CH-HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HhhcCC-
Confidence            77 7799999999985              347888999999999996  46655  677776544322    223333 


Q ss_pred             CCcEEEee
Q 021932          185 PKRLLGVT  192 (305)
Q Consensus       185 ~~kviG~t  192 (305)
                      ++|++|+.
T Consensus       136 ~~r~~g~h  143 (286)
T PRK07819        136 PGRVLGLH  143 (286)
T ss_pred             CccEEEEe
Confidence            56788874

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.73  E-value=6.8e-08  Score=100.56  Aligned_cols=118  Identities=19%  Similarity=0.242  Sum_probs=84.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--C-chh--hhh----hhccc---------CCceEEEEecCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--TAD----ISHMD---------TNAVVRGFLGQQQ  107 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~-~g~--~~D----L~~~~---------~~~~v~~~~~t~d  107 (305)
                      ..||+|||| |.+|..+|+.++..|+  +|+|+|+++  + .+.  ..+    +....         ...+++.   ++|
T Consensus       313 i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~  386 (715)
T PRK11730        313 VKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP---TLD  386 (715)
T ss_pred             cceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eCC
Confidence            469999999 9999999999999999  999999986  1 111  111    11100         0134543   457


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 021932          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (305)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~  186 (305)
                      + +++++||+||.++              .++.++.+++..++++++ |++++  .||.+.+-..-++   . ... .|+
T Consensus       387 ~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la---~-~~~-~p~  444 (715)
T PRK11730        387 Y-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL--ASNTSTISISLLA---K-ALK-RPE  444 (715)
T ss_pred             H-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH---h-hcC-CCc
Confidence            7 7799999999985              457899999999999999 56655  8998886542222   2 333 357


Q ss_pred             cEEEe
Q 021932          187 RLLGV  191 (305)
Q Consensus       187 kviG~  191 (305)
                      |++|+
T Consensus       445 r~~g~  449 (715)
T PRK11730        445 NFCGM  449 (715)
T ss_pred             cEEEE
Confidence            89997

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.71  E-value=6e-08  Score=101.17  Aligned_cols=119  Identities=20%  Similarity=0.246  Sum_probs=85.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C--chh--hhhhhcc-----c--------CCceEEEEecCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TADISHM-----D--------TNAVVRGFLGQQ  106 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~--~g~--~~DL~~~-----~--------~~~~v~~~~~t~  106 (305)
                      +..||+|||| |.+|..+|..++..|+  +|+|+|+++ .  ++.  ..+..+.     .        ...+++.   ++
T Consensus       334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~  407 (737)
T TIGR02441       334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP---TL  407 (737)
T ss_pred             cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eC
Confidence            4469999999 9999999999999999  999999986 1  211  1111110     0        0124443   45


Q ss_pred             CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 021932          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (305)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~  185 (305)
                      |+ +++++||+||.++              .+|.++.+++..++++++ |++++  .||...+-..-++    ..+. .|
T Consensus       408 ~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la----~~~~-~p  465 (737)
T TIGR02441       408 DY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSALPIKDIA----AVSS-RP  465 (737)
T ss_pred             CH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH----hhcC-Cc
Confidence            77 6899999999985              458899999999999999 57765  7998886543222    2333 35


Q ss_pred             CcEEEe
Q 021932          186 KRLLGV  191 (305)
Q Consensus       186 ~kviG~  191 (305)
                      +|++|+
T Consensus       466 ~r~ig~  471 (737)
T TIGR02441       466 EKVIGM  471 (737)
T ss_pred             cceEEE
Confidence            789997

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.71  E-value=1.9e-07  Score=86.76  Aligned_cols=119  Identities=20%  Similarity=0.307  Sum_probs=78.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhhh----hhhcc-----cC---------CceEEEEecCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA----DISHM-----DT---------NAVVRGFLGQQ  106 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~----DL~~~-----~~---------~~~v~~~~~t~  106 (305)
                      .+||+|||+ |.+|..+|..++..|+  +|+++|+++ ....+.    .+.+.     ..         ..+++.   ++
T Consensus         3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~   76 (287)
T PRK08293          3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT   76 (287)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence            359999999 9999999999999998  999999976 111111    11110     00         123443   45


Q ss_pred             CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 021932          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (305)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tNPvd~lt~~~~~~~~~~s~~p~  185 (305)
                      |+++++++||+||++..              ++.+..+++.+++.++++ ++++  ++|.......   ++.. .... +
T Consensus        77 d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntSt~~~~---~~~~-~~~~-~  135 (287)
T PRK08293         77 DLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSSTLLPS---QFAE-ATGR-P  135 (287)
T ss_pred             CHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECcccCCHH---HHHh-hcCC-c
Confidence            78788999999999862              246778888888888875 5544  5676665432   2222 2233 4


Q ss_pred             CcEEEe
Q 021932          186 KRLLGV  191 (305)
Q Consensus       186 ~kviG~  191 (305)
                      .|++|+
T Consensus       136 ~r~vg~  141 (287)
T PRK08293        136 EKFLAL  141 (287)
T ss_pred             ccEEEE
Confidence            577776

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.70  E-value=1.1e-07  Score=99.00  Aligned_cols=119  Identities=18%  Similarity=0.228  Sum_probs=85.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C--chh--hhhhh-----ccc--------CCceEEEEecCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TADIS-----HMD--------TNAVVRGFLGQQ  106 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~--~g~--~~DL~-----~~~--------~~~~v~~~~~t~  106 (305)
                      +.+||+|||| |.+|..+|..++..|+  +|+|+|+++ .  ++.  ..++.     ...        ...+++.   ++
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~  385 (714)
T TIGR02437       312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP---TL  385 (714)
T ss_pred             ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eC
Confidence            4569999999 9999999999999999  999999986 1  111  11111     100        0123443   45


Q ss_pred             CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 021932          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (305)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~  185 (305)
                      |+ +++++||+||.++              .++.++.+++..++++.+ |++++  .||.+.+-..-+    ...+. .|
T Consensus       386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l~i~~i----a~~~~-~p  443 (714)
T TIGR02437       386 SY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTISISLL----AKALK-RP  443 (714)
T ss_pred             CH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HhhcC-Cc
Confidence            77 7799999999985              457899999999999999 67765  899988754322    22333 46


Q ss_pred             CcEEEe
Q 021932          186 KRLLGV  191 (305)
Q Consensus       186 ~kviG~  191 (305)
                      +|++|+
T Consensus       444 ~r~ig~  449 (714)
T TIGR02437       444 ENFCGM  449 (714)
T ss_pred             ccEEEE
Confidence            789998

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.66  E-value=1.9e-07  Score=97.19  Aligned_cols=119  Identities=21%  Similarity=0.350  Sum_probs=84.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCC-C--ch--hhhhhhcc-----c--------CCceEEEEecC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PG--VTADISHM-----D--------TNAVVRGFLGQ  105 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~-~~~~~~el~L~D~~~-~--~g--~~~DL~~~-----~--------~~~~v~~~~~t  105 (305)
                      +.+||+|||| |.+|..+|..++ ..|+  +|+|+|+++ .  .+  ...+..+.     .        ...+++.   +
T Consensus       308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~  381 (708)
T PRK11154        308 PVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---T  381 (708)
T ss_pred             cccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---e
Confidence            3469999999 999999999998 7799  999999976 1  11  11111110     0        1134554   4


Q ss_pred             CCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 021932          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (305)
Q Consensus       106 ~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p  184 (305)
                      +|+ +++++||+||.++              .+|.++.+++..++++++ |++++  .||...+...-++   . ... .
T Consensus       382 ~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l~i~~la---~-~~~-~  439 (708)
T PRK11154        382 TDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSLPIGQIA---A-AAA-R  439 (708)
T ss_pred             CCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH---H-hcC-c
Confidence            577 7899999999985              458899999999999998 67766  7998886543222   2 233 3


Q ss_pred             CCcEEEe
Q 021932          185 PKRLLGV  191 (305)
Q Consensus       185 ~~kviG~  191 (305)
                      |+|++|+
T Consensus       440 p~r~ig~  446 (708)
T PRK11154        440 PEQVIGL  446 (708)
T ss_pred             ccceEEE
Confidence            5689988

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.66  E-value=2e-07  Score=96.82  Aligned_cols=119  Identities=18%  Similarity=0.297  Sum_probs=83.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCC-C--chh--hhh-hhcc----c--------CCceEEEEecC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PGV--TAD-ISHM----D--------TNAVVRGFLGQ  105 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~-~~~~~~el~L~D~~~-~--~g~--~~D-L~~~----~--------~~~~v~~~~~t  105 (305)
                      +.+||+|||| |.+|+.+|..++ ..|+  +|+|+|+++ .  .+.  ..+ +...    .        ...+++.   +
T Consensus       303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~  376 (699)
T TIGR02440       303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG---T  376 (699)
T ss_pred             cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE---e
Confidence            4469999999 999999999988 4799  999999986 1  111  111 1110    0        0123443   4


Q ss_pred             CCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 021932          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (305)
Q Consensus       106 ~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p  184 (305)
                      +|+ +++++||+||.++              .++.++.+++..++++++ |++++  .||...+...-++    ... -.
T Consensus       377 ~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~i~~la----~~~-~~  434 (699)
T TIGR02440       377 TDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSLPIGQIA----AAA-SR  434 (699)
T ss_pred             CCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCCCHHHHH----Hhc-CC
Confidence            577 6899999999985              457899999999999999 56655  7998886543222    222 34


Q ss_pred             CCcEEEe
Q 021932          185 PKRLLGV  191 (305)
Q Consensus       185 ~~kviG~  191 (305)
                      |+|++|+
T Consensus       435 p~r~~g~  441 (699)
T TIGR02440       435 PENVIGL  441 (699)
T ss_pred             cccEEEE
Confidence            5789987

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.64  E-value=1.9e-08  Score=89.29  Aligned_cols=121  Identities=21%  Similarity=0.346  Sum_probs=87.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C-----chhhhhhhccc-----------------CCceEE
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-----PGVTADISHMD-----------------TNAVVR  100 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~-----~g~~~DL~~~~-----------------~~~~v~  100 (305)
                      .+.+.|+|+|| |++|+.+|+..++.|+  .|.|+|.++ +     ++....+.+..                 ...+++
T Consensus         9 ~~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~   85 (298)
T KOG2304|consen    9 AEIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK   85 (298)
T ss_pred             ccccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence            34568999999 9999999999999999  999999987 1     22222222211                 012333


Q ss_pred             EEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCCcc-HHHHHHHHH
Q 021932          101 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNST-VPIAAEVFK  178 (305)
Q Consensus       101 ~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tNPvd~l-t~~~~~~~~  178 (305)
                      .   ++|.++++.|||+||.+              +.+|+++.+++.+.+++.|+ ++++  .||...+. +.++     
T Consensus        86 ~---~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~il--~tNTSSl~lt~ia-----  141 (298)
T KOG2304|consen   86 T---STNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSSTIL--ATNTSSLSLTDIA-----  141 (298)
T ss_pred             H---cCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccceEE--eecccceeHHHHH-----
Confidence            2   46888999999999886              46799999999999999995 5544  79998864 3332     


Q ss_pred             HhCCCCCCcEEEee
Q 021932          179 KVGTYDPKRLLGVT  192 (305)
Q Consensus       179 ~~s~~p~~kviG~t  192 (305)
                      ... -+|.|+.|+.
T Consensus       142 ~~~-~~~srf~GlH  154 (298)
T KOG2304|consen  142 SAT-QRPSRFAGLH  154 (298)
T ss_pred             hhc-cChhhhceee
Confidence            222 4567899984

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=98.57  E-value=5.4e-07  Score=83.68  Aligned_cols=109  Identities=20%  Similarity=0.330  Sum_probs=76.4

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCCCCCCC
Q 021932           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVPRKPG  129 (305)
Q Consensus        51 IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~~~~g  129 (305)
                      |+||+||+|++++..|+++|...+|+.+|+........++........+++ +....+++++++++|+||.+|+...-.+
T Consensus         2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~   81 (280)
T PF01073_consen    2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPWG   81 (280)
T ss_pred             EEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccccC
Confidence            899999999999999999995569999998662211112222211101121 1123467889999999999987543333


Q ss_pred             -CchhhHHHhhHHHHHHHHHHHHHhCCCcEE
Q 021932          130 -MTRDDLFNINAGIVKTLCEGIAKCCPKAIV  159 (305)
Q Consensus       130 -~~r~d~~~~N~~i~~~i~~~I~~~~p~aiv  159 (305)
                       ..+..+...|+...+.+++...+.+.+.+|
T Consensus        82 ~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlV  112 (280)
T PF01073_consen   82 DYPPEEYYKVNVDGTRNVLEAARKAGVKRLV  112 (280)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence             456778899999999999999988765544

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=98.57  E-value=5e-07  Score=84.06  Aligned_cols=121  Identities=21%  Similarity=0.223  Sum_probs=77.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEE----EEecC----CCHHHHhC--CCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVR----GFLGQ----QQLEDALT--GMD  116 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~----~~~~t----~d~~~al~--~aD  116 (305)
                      |.|+||+|++|+.++..|+..+. .+|+++|.++  +.....++.......+++    ...++    ..+..+++  +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence            67999999999999999998865 4999999988  344445553211112222    11111    12456677  999


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec----CCCCccH
Q 021932          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS----NPVNSTV  170 (305)
Q Consensus       117 iVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t----NPvd~lt  170 (305)
                      +||.+|....-+  .....+.+..|+-..+++++...+++.+.+|.+.|    ||.++|-
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~PtnvmG  139 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVMG  139 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHHH
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHHH
Confidence            999999753222  12456778999999999999999999888888875    7888774

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.56  E-value=9.3e-07  Score=87.84  Aligned_cols=122  Identities=15%  Similarity=0.167  Sum_probs=79.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC------chh-------hhhhhcccCCceEEEEecCCCHHHHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGV-------TADISHMDTNAVVRGFLGQQQLEDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~------~g~-------~~DL~~~~~~~~v~~~~~t~d~~~al  112 (305)
                      +|||+|||+ |+||..+|..|+..|..-+|+.+|+++.      .|.       ..+|.......++..   ++++++++
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~---t~~~~~~i   76 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF---STDVEKHV   76 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE---EcCHHHHH
Confidence            479999998 9999999999998864338999999861      111       011111101112443   45777889


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe--cCCCCccHHH
Q 021932          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI--SNPVNSTVPI  172 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~--tNPvd~lt~~  172 (305)
                      ++||++|+|.++|.+......+ -.-+...+.+.++.|.++.++..+++.  |-|....-.+
T Consensus        77 ~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~  137 (473)
T PLN02353         77 AEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI  137 (473)
T ss_pred             hcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHH
Confidence            9999999999998753210000 022456688888888888754444333  6888765444

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.56  E-value=8.9e-07  Score=79.18  Aligned_cols=100  Identities=21%  Similarity=0.177  Sum_probs=64.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhhhhhhccc----CCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~----~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      |||+|||++|.+|++++..|...|+  +|.++|+++  ......++.+..    ....+..    ++.+++++++|+||+
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~----~~~~ea~~~aDvVil   74 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG----ADNAEAAKRADVVIL   74 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE----eChHHHHhcCCEEEE
Confidence            5899998449999999999999987  999999876  222222222211    0111221    134688999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~  168 (305)
                      +..                ...+.++++.+...-.+.+|+-++||.+.
T Consensus        75 avp----------------~~~~~~~l~~l~~~l~~~vvI~~~ngi~~  106 (219)
T TIGR01915        75 AVP----------------WDHVLKTLESLRDELSGKLVISPVVPLAS  106 (219)
T ss_pred             ECC----------------HHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence            863                12233444445444344678888999875

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.55  E-value=1.2e-06  Score=81.26  Aligned_cols=117  Identities=21%  Similarity=0.382  Sum_probs=78.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chh-----h-hhhhccc---------CCceEEEEecCCCH
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV-----T-ADISHMD---------TNAVVRGFLGQQQL  108 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~-----~-~DL~~~~---------~~~~v~~~~~t~d~  108 (305)
                      +||+|||+ |.+|..++..++..|+  +|+++|+++.   .+.     . .++....         ...+++.   ++|+
T Consensus         4 ~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~~   77 (282)
T PRK05808          4 QKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTDL   77 (282)
T ss_pred             cEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCCH
Confidence            48999999 9999999999999998  9999999761   111     0 0111110         0123443   3566


Q ss_pred             HHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 021932          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (305)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~k  187 (305)
                       +++++||+||+++              .++..+.+++.+.+.++++ ++++  +||-..+-...+    ....+. +.|
T Consensus        78 -~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~l----a~~~~~-~~r  135 (282)
T PRK05808         78 -DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITEL----AAATKR-PDK  135 (282)
T ss_pred             -HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HHhhCC-Ccc
Confidence             5689999999995              2356777888889999884 6655  677777654332    223333 357


Q ss_pred             EEEe
Q 021932          188 LLGV  191 (305)
Q Consensus       188 viG~  191 (305)
                      ++|+
T Consensus       136 ~ig~  139 (282)
T PRK05808        136 VIGM  139 (282)
T ss_pred             eEEe
Confidence            8886

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.50  E-value=6.6e-07  Score=89.60  Aligned_cols=122  Identities=23%  Similarity=0.316  Sum_probs=80.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--C-chh--hh----hhhccc---------CCceEEEEecCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--TA----DISHMD---------TNAVVRGFLGQQ  106 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~-~g~--~~----DL~~~~---------~~~~v~~~~~t~  106 (305)
                      +..||+|||+ |.+|+.+|..++..|+  +|+++|+++  + .+.  ..    .+....         ...+++.   ++
T Consensus         4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~   77 (503)
T TIGR02279         4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT   77 (503)
T ss_pred             CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence            4468999999 9999999999999999  999999986  1 111  00    111100         0123443   35


Q ss_pred             CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 021932          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (305)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~  186 (305)
                      ++ +++++||+||.+.              .++..+.+.+...+.++++...+ ++||...+-..-++   . ... .+.
T Consensus        78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~i~~iA---~-~~~-~p~  136 (503)
T TIGR02279        78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADTI-IASNTSSLSITAIA---A-GLA-RPE  136 (503)
T ss_pred             CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeE-EEECCCCCCHHHHH---H-hcC-ccc
Confidence            66 6789999999985              34677888888889999854433 47888776543222   2 222 245


Q ss_pred             cEEEeee
Q 021932          187 RLLGVTM  193 (305)
Q Consensus       187 kviG~t~  193 (305)
                      |++|+..
T Consensus       137 r~~G~HF  143 (503)
T TIGR02279       137 RVAGLHF  143 (503)
T ss_pred             ceEEEec
Confidence            7777643

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.49  E-value=1.2e-06  Score=81.52  Aligned_cols=118  Identities=14%  Similarity=0.244  Sum_probs=75.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhhhh--------hh---cccC---------CceEEEEecC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD--------IS---HMDT---------NAVVRGFLGQ  105 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~D--------L~---~~~~---------~~~v~~~~~t  105 (305)
                      .||+|||+ |.+|..+|..++..|+  +|+++|+++ ....+.+        +.   +...         ..++..   +
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~   77 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT---S   77 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe---e
Confidence            58999999 9999999999999998  999999986 1111111        11   1000         112332   3


Q ss_pred             CCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCC
Q 021932          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYD  184 (305)
Q Consensus       106 ~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tNPvd~lt~~~~~~~~~~s~~p  184 (305)
                      +++ +++++||+||++..              ++.++.+++.+++.++++ ++++  +||...+...-+    ..... .
T Consensus        78 ~~~-~~~~~aDlVieav~--------------e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~~~~~l----a~~~~-~  135 (291)
T PRK06035         78 TSY-ESLSDADFIVEAVP--------------EKLDLKRKVFAELERNVSPETII--ASNTSGIMIAEI----ATALE-R  135 (291)
T ss_pred             CCH-HHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EEcCCCCCHHHH----HhhcC-C
Confidence            466 67899999999862              245667788888888874 5655  466555443222    22222 3


Q ss_pred             CCcEEEee
Q 021932          185 PKRLLGVT  192 (305)
Q Consensus       185 ~~kviG~t  192 (305)
                      +.|++|+.
T Consensus       136 ~~r~ig~h  143 (291)
T PRK06035        136 KDRFIGMH  143 (291)
T ss_pred             cccEEEEe
Confidence            56788873

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.47  E-value=1.5e-06  Score=87.25  Aligned_cols=122  Identities=20%  Similarity=0.278  Sum_probs=80.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---ch--hhhhh----hccc---------CCceEEEEecCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG--VTADI----SHMD---------TNAVVRGFLGQQQ  107 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g--~~~DL----~~~~---------~~~~v~~~~~t~d  107 (305)
                      ..||+|||+ |.+|..+|..++..|+  +|+++|+++.   .+  ...++    ....         ...++..   +++
T Consensus         7 i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~   80 (507)
T PRK08268          7 IATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEA   80 (507)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence            458999999 9999999999999999  9999999861   11  11111    1100         0123443   346


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 021932          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (305)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~  186 (305)
                      + +++++||+||.+.              .++.++.+.+...+++.+ |++++  +||-..+-..-+    ..... .++
T Consensus        81 ~-~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~i~~l----a~~~~-~p~  138 (507)
T PRK08268         81 L-ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLSITAI----AAALK-HPE  138 (507)
T ss_pred             H-HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HhhcC-Ccc
Confidence            6 5689999999985              346777888888899988 56655  466655433211    22333 357


Q ss_pred             cEEEeeehh
Q 021932          187 RLLGVTMLD  195 (305)
Q Consensus       187 kviG~t~Ld  195 (305)
                      |++|+..++
T Consensus       139 r~~G~hff~  147 (507)
T PRK08268        139 RVAGLHFFN  147 (507)
T ss_pred             cEEEEeecC
Confidence            888874333

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.46  E-value=5.2e-07  Score=76.64  Aligned_cols=94  Identities=24%  Similarity=0.311  Sum_probs=63.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc--------CCceEEEEecCCCHHHHhCCCCEEE
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------TNAVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~--------~~~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      ||+|+|| |..|.++|..|..+++  +|.|+++++.....+.-.+..        ....++.   ++|+++++++||+||
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII   74 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence            8999999 9999999999999997  999999975211111111211        0123443   468999999999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                      ++..                ....+++++++..+- ++..+++++
T Consensus        75 iavP----------------s~~~~~~~~~l~~~l~~~~~ii~~~  103 (157)
T PF01210_consen   75 IAVP----------------SQAHREVLEQLAPYLKKGQIIISAT  103 (157)
T ss_dssp             E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred             eccc----------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence            9852                234678888888887 445555443

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.43  E-value=4.9e-06  Score=82.94  Aligned_cols=208  Identities=19%  Similarity=0.236  Sum_probs=131.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecC----CCHHHHhCC--CC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ----QQLEDALTG--MD  116 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t----~d~~~al~~--aD  116 (305)
                      ..+.|.|+||+|++|+.+...++..+. .+|+++|.+|  ..-...+|.+.....+++.+.++    .-.+.++++  .|
T Consensus       249 ~gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd  327 (588)
T COG1086         249 TGKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD  327 (588)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence            345899999999999999988887754 5999999998  33344455543212333333222    235677888  99


Q ss_pred             EEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec----CCCCccHHHHHHHHHHhCCCCCCcEEE
Q 021932          117 IVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS----NPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (305)
Q Consensus       117 iVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t----NPvd~lt~~~~~~~~~~s~~p~~kviG  190 (305)
                      +|+.+|....-|-  ..-.+-++.|+-..+++++...+++-+.++++.|    ||.|+|-.  ++               
T Consensus       328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmGa--TK---------------  390 (588)
T COG1086         328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMGA--TK---------------  390 (588)
T ss_pred             eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhhH--HH---------------
Confidence            9999998655443  3456778999999999999999999888888876    88887642  21               


Q ss_pred             eeehhhHHHHHHHHHHhC-------CCCccee-EEEEcccCCcceeeccccCCC-CCC--CChhH-------HHHHHHHH
Q 021932          191 VTMLDVVRANTFVAEVLG-------LDPREVD-VPVVGGHAGVTILPLLSQVKP-SCS--LTPTE-------IDYLTDRI  252 (305)
Q Consensus       191 ~t~Lds~R~~~~la~~l~-------v~~~~V~-~~vlG~hg~~t~vp~~S~~~v-~~~--~~~~~-------~~~i~~~v  252 (305)
                             |+...+...++       -.-.-|+ +-|+|..|  +.+|+|.+--- +++  +++-+       ..|-.+-|
T Consensus       391 -------r~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrG--SViPlFk~QI~~GgplTvTdp~mtRyfMTI~EAv~LV  461 (588)
T COG1086         391 -------RLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRG--SVIPLFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQLV  461 (588)
T ss_pred             -------HHHHHHHHHHhhccCCCCcEEEEEEecceecCCC--CCHHHHHHHHHcCCCccccCCCceeEEEEHHHHHHHH
Confidence                   12122222221       1122343 67999988  58999874322 222  23322       12333333


Q ss_pred             Hhc-----hhhhhccccCCCCchhHHHHHHHHHHHHHHc
Q 021932          253 QNG-----GTEVVEAKTGAGSATLSMAYAAAKFADACLR  286 (305)
Q Consensus       253 ~~~-----g~~i~~~k~gkg~t~~s~A~a~~~~~~ai~~  286 (305)
                      -++     |.+|+-++       +|+..-+.++.++++.
T Consensus       462 lqA~a~~~gGeifvld-------MGepvkI~dLAk~mi~  493 (588)
T COG1086         462 LQAGAIAKGGEIFVLD-------MGEPVKIIDLAKAMIE  493 (588)
T ss_pred             HHHHhhcCCCcEEEEc-------CCCCeEHHHHHHHHHH
Confidence            333     33444333       3566677888887744

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.42  E-value=1.5e-06  Score=81.00  Aligned_cols=119  Identities=21%  Similarity=0.331  Sum_probs=73.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhh-----hhh----cccC--------CceEEEEecCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA-----DIS----HMDT--------NAVVRGFLGQQQ  107 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~-----DL~----~~~~--------~~~v~~~~~t~d  107 (305)
                      .+||+|||+ |.+|..+|..|+..|+  +|+++|+++. .....     .+.    ....        ..+++.   +++
T Consensus         4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~   77 (292)
T PRK07530          4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---ATD   77 (292)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eCC
Confidence            358999999 9999999999999998  9999999761 11111     010    0000        122443   346


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 021932          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (305)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~  186 (305)
                      + +++++||+||++..              ++..+.+.+.+.+.+++ |+++++  ||-..+-..   ++.. ... .+.
T Consensus        78 ~-~~~~~aD~Vieavp--------------e~~~~k~~~~~~l~~~~~~~~ii~--s~ts~~~~s---~la~-~~~-~~~  135 (292)
T PRK07530         78 L-EDLADCDLVIEAAT--------------EDETVKRKIFAQLCPVLKPEAILA--TNTSSISIT---RLAS-ATD-RPE  135 (292)
T ss_pred             H-HHhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEEE--EcCCCCCHH---HHHh-hcC-Ccc
Confidence            6 67899999999852              12344556667788776 566553  566554322   2222 222 345


Q ss_pred             cEEEee
Q 021932          187 RLLGVT  192 (305)
Q Consensus       187 kviG~t  192 (305)
                      |++|+.
T Consensus       136 r~~g~h  141 (292)
T PRK07530        136 RFIGIH  141 (292)
T ss_pred             cEEEee
Confidence            677753

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=98.40  E-value=3.7e-06  Score=82.85  Aligned_cols=114  Identities=16%  Similarity=0.049  Sum_probs=75.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .++|||.|+||+|+||++++..|+..|+  +|+.+|+... +....+.+......+..+... -..+.+.++|+||.+|+
T Consensus       118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~-~~~~~~~~~~~~~~~~~~~~D-i~~~~~~~~D~ViHlAa  193 (436)
T PLN02166        118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFT-GRKENLVHLFGNPRFELIRHD-VVEPILLEVDQIYHLAC  193 (436)
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCC-ccHhHhhhhccCCceEEEECc-cccccccCCCEEEECce
Confidence            4458999999999999999999999998  9999997531 111111111111223332211 12345789999999997


Q ss_pred             CCC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          124 VPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       124 ~~~--~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ...  ....+..+.+..|+....++++.+.+.+.  .+|.+|
T Consensus       194 ~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~S  233 (436)
T PLN02166        194 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTS  233 (436)
T ss_pred             eccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence            532  12234567788999999999999998764  444443

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.39  E-value=3.1e-06  Score=78.70  Aligned_cols=100  Identities=20%  Similarity=0.240  Sum_probs=65.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhh----hhhhcc-----c--------CCceEEEEecCCCH
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT----ADISHM-----D--------TNAVVRGFLGQQQL  108 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~----~DL~~~-----~--------~~~~v~~~~~t~d~  108 (305)
                      +||+|||+ |.+|..+|..|+..|+  +|+++|+++. ....    .++...     .        ...+++.   ++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~   75 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL   75 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence            48999999 9999999999999998  9999999861 1110    111000     0        0112333   3467


Q ss_pred             HHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 021932          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (305)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~  168 (305)
                      ++++++||+||++..              ++..+.+.+..++.+++ |++++  ++|...+
T Consensus        76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~il--~~~tSt~  120 (288)
T PRK09260         76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECYI--ATNTSTM  120 (288)
T ss_pred             HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCC
Confidence            789999999999863              13455566666777777 45554  3455443

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=98.36  E-value=8.8e-06  Score=75.84  Aligned_cols=113  Identities=18%  Similarity=0.123  Sum_probs=74.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhhhhccc-CCceEEEEe----cCCCHHHHhCCCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMD-TNAVVRGFL----GQQQLEDALTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~DL~~~~-~~~~v~~~~----~t~d~~~al~~aDiVI  119 (305)
                      .+||.|+||+|++|++++..|+.+|+  +|++++++... .....+.... ...++..+.    ....+.++++++|+||
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   81 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF   81 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence            45899999999999999999999998  88888876521 1111121110 012222221    1234667889999999


Q ss_pred             EcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHh-CCCcEEE
Q 021932          120 IPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKC-CPKAIVN  160 (305)
Q Consensus       120 i~ag~~~~~g~~-r~d~~~~N~~i~~~i~~~I~~~-~p~aivi  160 (305)
                      .+|+........ ..+.+..|+.....+++.+.+. ...-+|.
T Consensus        82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~  124 (322)
T PLN02662         82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVV  124 (322)
T ss_pred             EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence            999854221112 2367788999999999998876 4444443

>PLN02427 UDP-apiose/xylose synthase

Probab=98.36  E-value=4.8e-06  Score=80.21  Aligned_cols=115  Identities=17%  Similarity=0.087  Sum_probs=72.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCCc-hhhhhhhcccCCceEEEEec----CCCHHHHhCCCCEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIV  118 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDiV  118 (305)
                      ++|||.|+||+|++|++++..|+.. ++  +|+.+|.+... ....++.......+++.+.+    ..+++++++++|+|
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V   90 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLT   90 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence            4579999999999999999999987 46  89999975411 11111100000112332211    12456778899999


Q ss_pred             EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       119 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |.+|+.....  .....+.+..|+....++++..++.+ . .++.+|
T Consensus        91 iHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~-r~v~~S  135 (386)
T PLN02427         91 INLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-K-RLIHFS  135 (386)
T ss_pred             EEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-C-EEEEEe
Confidence            9999853211  12234556778888888888887765 3 344444

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.36  E-value=3.2e-06  Score=78.83  Aligned_cols=100  Identities=25%  Similarity=0.345  Sum_probs=66.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhh--------hhhhcccC---------CceEEEEecCCCH
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVT--------ADISHMDT---------NAVVRGFLGQQQL  108 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~--------~DL~~~~~---------~~~v~~~~~t~d~  108 (305)
                      +||+|||+ |.+|..+|..++..|+  +|+++|.++.. ..+        .++.....         ...+..   ++++
T Consensus         5 ~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~   78 (295)
T PLN02545          5 KKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC---TTNL   78 (295)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe---eCCH
Confidence            58999999 9999999999999998  99999997611 110        01111100         011222   3455


Q ss_pred             HHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 021932          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST  169 (305)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~l  169 (305)
                       +++++||+||.+.              .++.++...+...+.+.. |+++|  +||-..+-
T Consensus        79 -~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~  123 (295)
T PLN02545         79 -EELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSIS  123 (295)
T ss_pred             -HHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCC
Confidence             6799999999985              234566677777788776 56654  46666553

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.34  E-value=4.3e-06  Score=78.42  Aligned_cols=119  Identities=23%  Similarity=0.366  Sum_probs=71.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcc-----------cCCceEEEEecCCCHHHHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM-----------DTNAVVRGFLGQQQLEDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~-----------~~~~~v~~~~~t~d~~~al  112 (305)
                      .+||+|||+ |.+|..++..|+..|+  +|+++|.++.  ......+.+.           ....+++.   ++++++++
T Consensus         4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~   77 (311)
T PRK06130          4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAAAV   77 (311)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHHHh
Confidence            358999999 9999999999999998  9999998761  1111111000           00012332   34676789


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      ++||+||++..              .......++...+.... ++++|  +||...+-..   ++ ..... .+.+++|+
T Consensus        78 ~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~~~---~l-~~~~~-~~~~~ig~  136 (311)
T PRK06130         78 SGADLVIEAVP--------------EKLELKRDVFARLDGLCDPDTIF--ATNTSGLPIT---AI-AQAVT-RPERFVGT  136 (311)
T ss_pred             ccCCEEEEecc--------------CcHHHHHHHHHHHHHhCCCCcEE--EECCCCCCHH---HH-HhhcC-CcccEEEE
Confidence            99999999852              12344556666677766 45544  4555554332   22 22211 24567776

>PLN02650 dihydroflavonol-4-reductase

Probab=98.32  E-value=1.3e-05  Score=76.19  Aligned_cols=119  Identities=16%  Similarity=0.097  Sum_probs=75.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcc-cCCceEEEEe----cCCCHHHHhCCCC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTNAVVRGFL----GQQQLEDALTGMD  116 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~-~~~~~v~~~~----~t~d~~~al~~aD  116 (305)
                      +...++|.|+||+|++|++++..|+..|+  +|++++++.. .....++... .....+..+.    ....++++++++|
T Consensus         2 ~~~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d   79 (351)
T PLN02650          2 GSQKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCT   79 (351)
T ss_pred             CCCCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCC
Confidence            44556999999999999999999999998  8888887642 1111122111 0011222221    1124567788999


Q ss_pred             EEEEcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          117 IVIIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       117 iVIi~ag~~~~~g~~-r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +||.+|+.......+ ..+.+..|+.....+++.+.+.+.-..|+.+|
T Consensus        80 ~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~S  127 (351)
T PLN02650         80 GVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTS  127 (351)
T ss_pred             EEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence            999999753211112 23567889999999999998875322344443

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=98.30  E-value=9.4e-06  Score=83.93  Aligned_cols=125  Identities=16%  Similarity=0.127  Sum_probs=81.7

Q ss_pred             ccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC
Q 021932           27 EGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ  105 (305)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t  105 (305)
                      .|++ +.++-.|+.+   +.+||.|+||+|++|++++..|+.. ++  +|+.+|++...-  .++..   ...+..+.+.
T Consensus       300 ~g~~-~~~~~~~~~~---~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~--~~~~~---~~~~~~~~gD  368 (660)
T PRK08125        300 AGAR-LNSKPACSAK---RRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAI--SRFLG---HPRFHFVEGD  368 (660)
T ss_pred             CCCE-ecccchhhhh---cCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhh--hhhcC---CCceEEEecc
Confidence            3444 5666666654   5679999999999999999999875 67  999999865210  11111   1122222111


Q ss_pred             -CC----HHHHhCCCCEEEEcCCCCC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          106 -QQ----LEDALTGMDIVIIPAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       106 -~d----~~~al~~aDiVIi~ag~~~--~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                       .|    .+++++++|+||.+|+...  .......+.+..|+....++++.+.+++ .-+|...|
T Consensus       369 l~d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS  432 (660)
T PRK08125        369 ISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPST  432 (660)
T ss_pred             ccCcHHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcc
Confidence             11    3456889999999987543  1223445677889999999999999886 33443333

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=98.29  E-value=1e-05  Score=76.90  Aligned_cols=168  Identities=14%  Similarity=0.027  Sum_probs=96.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhh-cc--cCCceEEEEecC----CCHHHHhCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADIS-HM--DTNAVVRGFLGQ----QQLEDALTGMD  116 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~-~~--~~~~~v~~~~~t----~d~~~al~~aD  116 (305)
                      ++||.|+||+|++|++++..|+..+.  +|+.+|+...  .....++. ..  ....++..+.+.    .++.+.++++|
T Consensus        15 ~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d   92 (348)
T PRK15181         15 PKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVD   92 (348)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCC
Confidence            35999999999999999999999987  9999997531  10011111 00  001123332211    13445678999


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec-----CCCCccHHHHHHHHHHhCCCCCCcEE
Q 021932          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-----NPVNSTVPIAAEVFKKVGTYDPKRLL  189 (305)
Q Consensus       117 iVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t-----NPvd~lt~~~~~~~~~~s~~p~~kvi  189 (305)
                      +||.+|+....+  .++..+....|+....++++.+++.+.+-+|...|     ++.+..  .     .+..-..|....
T Consensus        93 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~--~-----~e~~~~~p~~~Y  165 (348)
T PRK15181         93 YVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLP--K-----IEERIGRPLSPY  165 (348)
T ss_pred             EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCC--C-----CCCCCCCCCChh
Confidence            999999754321  13345678889999999999999886554443322     111100  0     000011223334


Q ss_pred             EeeehhhHHHHHHHHHHhCCCCccee-EEEEccc
Q 021932          190 GVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH  222 (305)
Q Consensus       190 G~t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~h  222 (305)
                      |.+-+...++....++..+++..-++ ..+.|.+
T Consensus       166 ~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~  199 (348)
T PRK15181        166 AVTKYVNELYADVFARSYEFNAIGLRYFNVFGRR  199 (348)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence            44333333333334555678777776 6788864

>PLN00198 anthocyanidin reductase; Provisional

Probab=98.27  E-value=2e-05  Score=74.27  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=73.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEec----CCCHHHHhCCCCEEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVII  120 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi  120 (305)
                      .+||.|+||+|++|++++..|+..|+  +|++++++. ......++.......++..+.+    ..++.+.++++|+||.
T Consensus         9 ~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   86 (338)
T PLN00198          9 KKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH   86 (338)
T ss_pred             CCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence            46899999999999999999999998  887777654 2111111111110112332221    1235567889999999


Q ss_pred             cCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          121 PAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       121 ~ag~~~~~g~~-r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                      +|+.......+ ..+++..|+.....+++.+.+.. .+.+|.+.|
T Consensus        87 ~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS  131 (338)
T PLN00198         87 VATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSS  131 (338)
T ss_pred             eCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeec
Confidence            99743211122 23456889999999999998874 344444333

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.26  E-value=1e-05  Score=81.09  Aligned_cols=103  Identities=14%  Similarity=0.148  Sum_probs=68.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhh--------hh---ccc--CCceEEEEecCCCHHHHh
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTAD--------IS---HMD--TNAVVRGFLGQQQLEDAL  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~D--------L~---~~~--~~~~v~~~~~t~d~~~al  112 (305)
                      +||+|||+ |.+|+.+|..|+..|+  +|.++|+++.. ....+        +.   ...  ...+++.   ++++++++
T Consensus         5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea~   78 (495)
T PRK07531          5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEAV   78 (495)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHHh
Confidence            58999999 9999999999999999  99999997621 11101        00   000  0012332   34677889


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccH
Q 021932          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV  170 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt  170 (305)
                      ++||+||.+.              .++.++.+.+...+.+.+++.. ++.||...+..
T Consensus        79 ~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~  121 (495)
T PRK07531         79 AGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLP  121 (495)
T ss_pred             cCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCH
Confidence            9999999985              2245566667777888775443 34677777653

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.25  E-value=1.5e-05  Score=74.84  Aligned_cols=103  Identities=23%  Similarity=0.269  Sum_probs=66.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhh--------hhhcccC---------CceEEEEecCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA--------DISHMDT---------NAVVRGFLGQQQ  107 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~--------DL~~~~~---------~~~v~~~~~t~d  107 (305)
                      .+||+|||+ |.+|+++|..|+..|+  +|+++|+++. ...+.        .+.....         ..++..   +++
T Consensus         2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~   75 (308)
T PRK06129          2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDS   75 (308)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECc
Confidence            358999998 9999999999999998  9999999761 11100        1111110         112333   357


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 021932          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (305)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~l  169 (305)
                      +.+++++||+|+++..              ++....+.+...+.+..++..++ .||-....
T Consensus        76 ~~~a~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~ii-~ssts~~~  122 (308)
T PRK06129         76 LADAVADADYVQESAP--------------ENLELKRALFAELDALAPPHAIL-ASSTSALL  122 (308)
T ss_pred             HHHhhCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcceE-EEeCCCCC
Confidence            8788999999999852              12344555666677777554444 45544433

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=98.22  E-value=2.1e-05  Score=74.18  Aligned_cols=106  Identities=19%  Similarity=0.116  Sum_probs=77.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cch--hhhhhhcccCCceEEEEe----cCCCHHHHhCCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG--VTADISHMDTNAVVRGFL----GQQQLEDALTGMD  116 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g--~~~DL~~~~~~~~v~~~~----~t~d~~~al~~aD  116 (305)
                      ..++|+|+||+|++|+.++..|+++|+  +|+-.=+++  .+.  +..+|....  .+++.+.    ..+.+.+|+++||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd   80 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD   80 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence            457999999999999999999999999  777666554  222  344555332  2233321    1245789999999


Q ss_pred             EEEEcCCCCCCCCC-chhhHHHhhHHHHHHHHHHHHHhC
Q 021932          117 IVIIPAGVPRKPGM-TRDDLFNINAGIVKTLCEGIAKCC  154 (305)
Q Consensus       117 iVIi~ag~~~~~g~-~r~d~~~~N~~i~~~i~~~I~~~~  154 (305)
                      .||.+|....-... ...+++.-.++..+++.+.+.+..
T Consensus        81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~  119 (327)
T KOG1502|consen   81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK  119 (327)
T ss_pred             EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC
Confidence            99999874322222 244788899999999999999998

>PLN02206 UDP-glucuronate decarboxylase

Probab=98.21  E-value=1.9e-05  Score=78.01  Aligned_cols=113  Identities=18%  Similarity=0.088  Sum_probs=74.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      +.|||.|+||+|+||++++..|+..|+  +|+.+|.... +....+.+.....++..+.+. -...++.++|+||.+|+.
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~-~~~~~~~~~~~~~~~~~i~~D-~~~~~l~~~D~ViHlAa~  193 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFT-GRKENVMHHFSNPNFELIRHD-VVEPILLEVDQIYHLACP  193 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCc-cchhhhhhhccCCceEEEECC-ccChhhcCCCEEEEeeee
Confidence            457999999999999999999999998  8999986431 111111110011223332221 123467889999999975


Q ss_pred             CC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          125 PR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       125 ~~--~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ..  ....+..+.+..|+....++++.+++.+.  .+|.+|
T Consensus       194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~S  232 (442)
T PLN02206        194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS  232 (442)
T ss_pred             cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence            32  11223466788999999999999988763  444443

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.21  E-value=2.8e-05  Score=75.92  Aligned_cols=119  Identities=25%  Similarity=0.316  Sum_probs=75.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc----------------CCceEEEEecCCCHHH
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TNAVVRGFLGQQQLED  110 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~----------------~~~~v~~~~~t~d~~~  110 (305)
                      |||+|||. |.||..+|..|+..|+  +|+++|+++.+.  .+|....                ...+++.   ++++.+
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~v--~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~   72 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEKV--DKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED   72 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHHH--HHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence            58999998 9999999999999998  999999976211  1111100                0112333   346777


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHHHHHHHHH
Q 021932          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPIAAEVFKK  179 (305)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~-tNPvd~lt~~~~~~~~~  179 (305)
                      +++++|+||++.+.|.....      .-+...+.+..+.+.+.. ++.++++. |-|....-.+..++..+
T Consensus        73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~  137 (411)
T TIGR03026        73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER  137 (411)
T ss_pred             HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence            89999999999987754321      124455666666666654 45555544 45555554444444443

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=98.20  E-value=1e-05  Score=77.83  Aligned_cols=122  Identities=14%  Similarity=0.016  Sum_probs=77.6

Q ss_pred             ccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE--EecCCCHHHHh
Q 021932           35 RMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDAL  112 (305)
Q Consensus        35 ~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~~al  112 (305)
                      .+.+++.+-+..|||.|+||+|++|++++..|...|+  +|+.+|+.... ...+   ......+..  ......+.+++
T Consensus        10 ~~~~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~~~~---~~~~~~~~~~Dl~d~~~~~~~~   83 (370)
T PLN02695         10 ELEREPYWPSEKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-HMSE---DMFCHEFHLVDLRVMENCLKVT   83 (370)
T ss_pred             hcCCCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-cccc---ccccceEEECCCCCHHHHHHHH
Confidence            3455555556678999999999999999999999998  99999975310 0000   000001110  00011234567


Q ss_pred             CCCCEEEEcCCCCCCCC---CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Q 021932          113 TGMDIVIIPAGVPRKPG---MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~  162 (305)
                      +++|+||.+|+.....+   ......+..|+.....+++.+.+.+.+.+|.+.
T Consensus        84 ~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~S  136 (370)
T PLN02695         84 KGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYAS  136 (370)
T ss_pred             hCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            89999999987432111   122335678999999999999888766555443

>PLN02214 cinnamoyl-CoA reductase

Probab=98.15  E-value=4e-05  Score=72.86  Aligned_cols=110  Identities=15%  Similarity=0.065  Sum_probs=75.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hh-hhhhhcccCCceEEEEe----cCCCHHHHhCCCCE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GV-TADISHMDTNAVVRGFL----GQQQLEDALTGMDI  117 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~-~~DL~~~~~~~~v~~~~----~t~d~~~al~~aDi  117 (305)
                      +.++|.|+||+|++|++++..|+..|+  +|+.++++...  .. ...+...  ...+..+.    ...++.++++++|+
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~   84 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDG   84 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCE
Confidence            345899999999999999999999998  88888875421  11 1112111  11222221    12346678899999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 021932          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (305)
Q Consensus       118 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv  161 (305)
                      ||.+|+...   ....+.+..|+.....+++.+.+.+.+.+|.+
T Consensus        85 Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~  125 (342)
T PLN02214         85 VFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVKRVVIT  125 (342)
T ss_pred             EEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence            999998542   23456778899999999999998765544443

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=98.13  E-value=7.2e-05  Score=71.01  Aligned_cols=117  Identities=19%  Similarity=0.074  Sum_probs=72.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch-hhh-hhhcccCCceEEE-EecCCCHHHHhCC--CCEEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTA-DISHMDTNAVVRG-FLGQQQLEDALTG--MDIVII  120 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g-~~~-DL~~~~~~~~v~~-~~~t~d~~~al~~--aDiVIi  120 (305)
                      .++|.|+||+|++|++++..|++.|.  +|+.+|++.... ... .+........+.. .....++.+.+++  .|+||.
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih   81 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH   81 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence            46899999999999999999999998  899999865211 111 1111100011111 1111234445554  599999


Q ss_pred             cCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       121 ~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +|+.+...  ..+....+..|+.....+++.+.+.+....++.+|.
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS  127 (349)
T TIGR02622        82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS  127 (349)
T ss_pred             CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            99854221  123355678899999999999887652234444443

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>CHL00194 ycf39 Ycf39; Provisional

Probab=98.13  E-value=1.3e-05  Score=75.21  Aligned_cols=109  Identities=13%  Similarity=0.083  Sum_probs=71.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      |||.|+||+|++|+.++..|+..|+  +|+.++++....  ..+.+.. ..-+.+ .....++.++++++|+||.+++..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~-v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~   75 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWG-AELVYGDLSLPETLPPSFKGVTAIIDASTSR   75 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcC-CEEEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence            5899999999999999999999998  999998864211  1111111 001111 111134678899999999987643


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ..   ...+....|......+++.+++.+.+-+|.+.+
T Consensus        76 ~~---~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss  110 (317)
T CHL00194         76 PS---DLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI  110 (317)
T ss_pred             CC---CccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence            21   122345668888899999999887665544433

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.12  E-value=8.5e-06  Score=62.84  Aligned_cols=94  Identities=19%  Similarity=0.245  Sum_probs=61.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCC-CCcEEEEE-eCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINP-LVSVLHLY-DVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~-D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      ||+|||+ |.+|+.++..|...+ ...+|.++ ++++.  ...++.... .  +..+  ..+..++++++|+||++.-  
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~--~~~~~~~~~-~--~~~~--~~~~~~~~~~advvilav~--   70 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPE--KAAELAKEY-G--VQAT--ADDNEEAAQEADVVILAVK--   70 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHH--HHHHHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHH--HHHHHHHhh-c--cccc--cCChHHhhccCCEEEEEEC--
Confidence            7999998 999999999999988 23488866 87652  122222211 1  1211  1246789999999999862  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNP  165 (305)
                        |            ..+.++++.+....++.+++-++||
T Consensus        71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred             --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence              1            2256666677545578888877776

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=98.12  E-value=3e-05  Score=72.09  Aligned_cols=112  Identities=18%  Similarity=0.208  Sum_probs=74.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      |||.|+||+|++|+.++..|+..|+  +|+++|++....  .++.+.. ...+.. .....++.++++++|+||.+++..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~-~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~   75 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGLD-VEIVEGDLRDPASLRKAVAGCRALFHVAADY   75 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccCC-ceEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence            4899999999999999999999997  999999865211  1111111 011111 111124567788999999998753


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .....+..+....|+.....+++.+.+.+-+.+|.+.|
T Consensus        76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS  113 (328)
T TIGR03466        76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSS  113 (328)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            32334456677889999999999988776444444333

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=98.12  E-value=3.1e-05  Score=73.39  Aligned_cols=109  Identities=17%  Similarity=0.141  Sum_probs=70.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-----CCHHHHhCCCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-----QQLEDALTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-----~d~~~al~~aDiVI  119 (305)
                      +|||.|+||+|++|++++..|+.. ++  +|+.+|+...  ...++...   ..++.+.+.     ..+.++++++|+||
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~--~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi   73 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTD--RLGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL   73 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHH--HHHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence            368999999999999999999875 56  8999997431  11111111   122222111     12335678999999


Q ss_pred             EcCCCCC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          120 IPAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       120 i~ag~~~--~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .+|+...  ....+.......|+....++++.+.+.. . .++.+|
T Consensus        74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~-~~v~~S  117 (347)
T PRK11908         74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K-HLVFPS  117 (347)
T ss_pred             ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-C-eEEEEe
Confidence            9987532  2223344556778888999999988765 4 444443

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.12  E-value=3e-05  Score=75.38  Aligned_cols=116  Identities=17%  Similarity=0.280  Sum_probs=69.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc------hhh----hhhhcccCCceEEEEecCCCHHHHhCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GVT----ADISHMDTNAVVRGFLGQQQLEDALTGMD  116 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~------g~~----~DL~~~~~~~~v~~~~~t~d~~~al~~aD  116 (305)
                      |||+|||. |+||..+|..++. |+  +|+.+|+++.+      |..    ..+.+.......+. ..+.+.+++.++||
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l-~~t~~~~~~~~~ad   75 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHF-NATLDKNEAYRDAD   75 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcE-EEecchhhhhcCCC
Confidence            58999998 9999999977774 77  99999998611      110    00111000011222 12345667889999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-cCCCCccHHH
Q 021932          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNSTVPI  172 (305)
Q Consensus       117 iVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~-tNPvd~lt~~  172 (305)
                      +||++.+.|.......     -+...+++.++.|.+..|+.++++- |-|....-.+
T Consensus        76 ~vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l  127 (388)
T PRK15057         76 YVIIATPTDYDPKTNY-----FNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAM  127 (388)
T ss_pred             EEEEeCCCCCccCCCC-----cChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHH
Confidence            9999987663221111     1345556666666654455555443 5777665444

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=98.11  E-value=7.2e-05  Score=68.93  Aligned_cols=113  Identities=19%  Similarity=0.127  Sum_probs=71.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch---hhhhhhcccCCceEEEEe----cCCCHHHHhCC--CCEE
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGFL----GQQQLEDALTG--MDIV  118 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g---~~~DL~~~~~~~~v~~~~----~t~d~~~al~~--aDiV  118 (305)
                      ||.|+||+|++|..++..|+..+...+|+++|......   ...++...   ..+..+.    ...++.+++++  +|+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v   77 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV   77 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence            58999999999999999888776323889988643111   11122111   1222221    11234566776  8999


Q ss_pred             EEcCCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          119 IIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       119 Ii~ag~~~~--~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |.+++....  .......++..|......+++.+.+...+..++.+|
T Consensus        78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~S  124 (317)
T TIGR01181        78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIS  124 (317)
T ss_pred             EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence            999975321  112334567889999999999998876554455544

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.08  E-value=6.2e-05  Score=71.04  Aligned_cols=111  Identities=22%  Similarity=0.357  Sum_probs=71.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc--c--C------CceEEEEecCCCHHHHhCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--D--T------NAVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~--~--~------~~~v~~~~~t~d~~~al~~a  115 (305)
                      ++||+|+|+ |.-|+++|..|+.+++  +|+|+.+++.  .+.|+...  .  .      .+.++.   ++|+++++++|
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~~--~~~~i~~~~~N~~yLp~i~lp~~l~a---t~Dl~~a~~~a   72 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDEE--IVAEINETRENPKYLPGILLPPNLKA---TTDLAEALDGA   72 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCHH--HHHHHHhcCcCccccCCccCCccccc---ccCHHHHHhcC
Confidence            469999999 9999999999999998  9999998762  12223321  1  1      123332   57999999999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCc-cHHHHHHHHHHh
Q 021932          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS-TVPIAAEVFKKV  180 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~-lt~~~~~~~~~~  180 (305)
                      |+|++...                ...++++++++..+- ++.+++.+|.=.+. ...++++++++.
T Consensus        73 d~iv~avP----------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~  123 (329)
T COG0240          73 DIIVIAVP----------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEE  123 (329)
T ss_pred             CEEEEECC----------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHH
Confidence            99999752                244566666665443 56666666522111 112335555554

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=98.07  E-value=3.3e-05  Score=72.88  Aligned_cols=114  Identities=17%  Similarity=0.233  Sum_probs=75.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh--hhhhhcccCCceEEEEe----cCCCHHHHhCCCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFL----GQQQLEDALTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~--~~DL~~~~~~~~v~~~~----~t~d~~~al~~aDiVI  119 (305)
                      .++|.|+||+|++|++++..|+..+...+|+++|.+.....  ..++..    ..+..+.    ...++.+++++.|+||
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi   79 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV   79 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence            35899999999999999999988763238999997652211  111111    1222221    1123556778999999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       120 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .+||....+  ..+..+.+..|+.....+++.+.+.+...+|.+.|
T Consensus        80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS  125 (324)
T TIGR03589        80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST  125 (324)
T ss_pred             ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence            999864322  22345678899999999999999876544444433

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.06  E-value=4.2e-05  Score=73.71  Aligned_cols=107  Identities=15%  Similarity=0.243  Sum_probs=71.0

Q ss_pred             ccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCCC---chhhhhhhccc----C---
Q 021932           31 SGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT---PGVTADISHMD----T---   95 (305)
Q Consensus        31 ~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~-----~~el~L~D~~~~---~g~~~DL~~~~----~---   95 (305)
                      +.|.+.-|++.      ||+|||+ |.-|+++|..|..++.     ..+|.|+.+++.   +..+.++.+..    .   
T Consensus         2 ~~~~~~~~~~~------ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~   74 (365)
T PTZ00345          2 SLFQKLRCGPL------KVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPG   74 (365)
T ss_pred             cchhhcccCCC------eEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCC
Confidence            57778888775      9999999 9999999999998862     238999988762   12334444321    1   


Q ss_pred             ---CceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHH--hC-CCcEEEEec
Q 021932           96 ---NAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK--CC-PKAIVNLIS  163 (305)
Q Consensus        96 ---~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~--~~-p~aiviv~t  163 (305)
                         ..++..   ++|+.+++++||+||++..                ...++++++++..  +- ++.+++.++
T Consensus        75 ~~Lp~ni~~---tsdl~eav~~aDiIvlAVP----------------sq~l~~vl~~l~~~~~l~~~~~iIS~a  129 (365)
T PTZ00345         75 IKLPDNIVA---VSDLKEAVEDADLLIFVIP----------------HQFLESVLSQIKENNNLKKHARAISLT  129 (365)
T ss_pred             CcCCCceEE---ecCHHHHHhcCCEEEEEcC----------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence               123443   4578889999999999852                2345666666665  32 344555443

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=98.05  E-value=6.4e-05  Score=64.27  Aligned_cols=91  Identities=27%  Similarity=0.333  Sum_probs=65.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC----CCHHHHhCCCCEEEEcCCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t----~d~~~al~~aDiVIi~ag~  124 (305)
                      |.|+||+|++|..++..|+..++  +|+++-+++.+  ..+      ...++.+.+.    .++.++++++|.||.++|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~--~~~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSK--AED------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGG--HHH------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchh--ccc------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            78999999999999999999997  99999886521  111      1222222111    2457889999999999875


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN  160 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aivi  160 (305)
                      +.+           +.+..+.+++.+++.+..-+++
T Consensus        71 ~~~-----------~~~~~~~~~~a~~~~~~~~~v~   95 (183)
T PF13460_consen   71 PPK-----------DVDAAKNIIEAAKKAGVKRVVY   95 (183)
T ss_dssp             TTT-----------HHHHHHHHHHHHHHTTSSEEEE
T ss_pred             hcc-----------ccccccccccccccccccccee
Confidence            533           2678889999998887554444

...

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.04  E-value=4.4e-05  Score=71.57  Aligned_cols=101  Identities=21%  Similarity=0.324  Sum_probs=65.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhccc------CCceEEEEecCCCHHHHhCCCCE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMD------TNAVVRGFLGQQQLEDALTGMDI  117 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~~~------~~~~v~~~~~t~d~~~al~~aDi  117 (305)
                      +|||+|||+ |.+|+.++..|+..|+  +|.++|+++..  ....+..+..      ....+..   .++.+++++++|+
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~   74 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL   74 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence            369999998 9999999999999988  89999987521  1111100000      0012322   2466678899999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 021932          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (305)
Q Consensus       118 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~  168 (305)
                      ||++...                ..+.++++.+.++. |+.+++..+|-++.
T Consensus        75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence            9998631                12455555666554 67788878766553

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=98.02  E-value=0.00016  Score=67.68  Aligned_cols=114  Identities=17%  Similarity=0.116  Sum_probs=71.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhhhhcc-cCCceEEEEec----CCCHHHHhCCCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM-DTNAVVRGFLG----QQQLEDALTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~DL~~~-~~~~~v~~~~~----t~d~~~al~~aDiVI  119 (305)
                      .++|.|+||+|++|++++..|+..|+  +|++..++... .....+... .....+..+.+    ...+.++++++|+||
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi   82 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF   82 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence            45999999999999999999999998  88766554421 111222111 00122332211    124567788999999


Q ss_pred             EcCCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEE
Q 021932          120 IPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNL  161 (305)
Q Consensus       120 i~ag~~~~~-g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv  161 (305)
                      .+|+..... .....+++..|+.....+++.+.+.. .+.+|.+
T Consensus        83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~  126 (322)
T PLN02986         83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILT  126 (322)
T ss_pred             EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEe
Confidence            999853211 11223467789999999999888753 3334433

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=98.01  E-value=0.00017  Score=67.43  Aligned_cols=113  Identities=17%  Similarity=0.112  Sum_probs=71.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch-hhhhhhc-ccCCceEEEEe----cCCCHHHHhCCCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISH-MDTNAVVRGFL----GQQQLEDALTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g-~~~DL~~-~~~~~~v~~~~----~t~d~~~al~~aDiVI  119 (305)
                      .++|.|+||+|++|++++..|+..|+  +|++++++.... ....+.. .....++..+.    ...++++++++.|+||
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            45899999999999999999999998  888887665211 1111111 01011232221    1124556788999999


Q ss_pred             EcCCCCCCC-C-CchhhHHHhhHHHHHHHHHHHHHhC-CCcEEE
Q 021932          120 IPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCC-PKAIVN  160 (305)
Q Consensus       120 i~ag~~~~~-g-~~r~d~~~~N~~i~~~i~~~I~~~~-p~aivi  160 (305)
                      .+||..... . ....+.+..|+.....+.+.+.+.. ...+|.
T Consensus        83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~  126 (325)
T PLN02989         83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVIL  126 (325)
T ss_pred             EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence            999853211 1 1224567889999999999988764 333443

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=97.99  E-value=0.0001  Score=72.45  Aligned_cols=120  Identities=14%  Similarity=0.154  Sum_probs=73.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc------------CCceEEEEecCCCHHHH
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD------------TNAVVRGFLGQQQLEDA  111 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~------------~~~~v~~~~~t~d~~~a  111 (305)
                      .++|||+|||. |+||..+|..|+. ++  +|+.||+++.+  +.+|....            ....+..   +++. ++
T Consensus         4 ~~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~~--ve~l~~G~~~~~e~~~~~l~~~g~l~~---t~~~-~~   73 (425)
T PRK15182          4 IDEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKKR--ILELKNGVDVNLETTEEELREARYLKF---TSEI-EK   73 (425)
T ss_pred             CCCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHHH--HHHHHCcCCCCCCCCHHHHHhhCCeeE---EeCH-HH
Confidence            34589999998 9999999999876 56  99999998621  12222111            0012232   3454 67


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEE-ecCCCCccHHHHHHHHHH
Q 021932          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNL-ISNPVNSTVPIAAEVFKK  179 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv-~tNPvd~lt~~~~~~~~~  179 (305)
                      +++||++|+|.+.|.+...      ..+..-+....+.|.++. +..++|+ .|-|....-.++...+.+
T Consensus        74 ~~~advvii~Vptp~~~~~------~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~  137 (425)
T PRK15182         74 IKECNFYIITVPTPINTYK------QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILAR  137 (425)
T ss_pred             HcCCCEEEEEcCCCCCCCC------CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHh
Confidence            9999999999998864321      113344555556666665 3444444 356666554343333333

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=97.98  E-value=0.00019  Score=67.98  Aligned_cols=106  Identities=17%  Similarity=0.097  Sum_probs=66.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEE----ecCCCHHHHhCC--CCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDALTG--MDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~----~~t~d~~~al~~--aDiVIi  120 (305)
                      +||.|+||+|++|++++..|...|. ..++++|..+..+....+.+......+...    ....++++++++  .|+||.
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih   80 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH   80 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence            5899999999999999999998886 256677764321211112111001112111    111234455663  899999


Q ss_pred             cCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHh
Q 021932          121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKC  153 (305)
Q Consensus       121 ~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~  153 (305)
                      +||.....  .....+.+..|+.....+++.+.++
T Consensus        81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~  115 (355)
T PRK10217         81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAY  115 (355)
T ss_pred             CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHh
Confidence            99864321  1223567788999999999998875

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.98  E-value=5.4e-05  Score=64.54  Aligned_cols=89  Identities=18%  Similarity=0.242  Sum_probs=59.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      ++||++||. |.+|+.++..|+..|+  +|..||+++  ....++.+..    .+..   .+++++++++|+||.+..  
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~~---~s~~e~~~~~dvvi~~v~--   66 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEVA---DSPAEAAEQADVVILCVP--   66 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEEE---SSHHHHHHHBSEEEE-SS--
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhhh---hhhhhHhhcccceEeecc--
Confidence            479999998 9999999999999999  999999864  2222333321    3322   357899999999999852  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHH--HHHhC-CCcEEEE
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEG--IAKCC-PKAIVNL  161 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~--I~~~~-p~aiviv  161 (305)
                                   +.+.++++...  +.... +..+++.
T Consensus        67 -------------~~~~v~~v~~~~~i~~~l~~g~iiid   92 (163)
T PF03446_consen   67 -------------DDDAVEAVLFGENILAGLRPGKIIID   92 (163)
T ss_dssp             -------------SHHHHHHHHHCTTHGGGS-TTEEEEE
T ss_pred             -------------cchhhhhhhhhhHHhhccccceEEEe
Confidence                         34556666666  55555 3444443

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.97  E-value=8e-05  Score=66.01  Aligned_cols=96  Identities=19%  Similarity=0.262  Sum_probs=64.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      +|+++|+|+ |++|+.++..+...++  ||.+-..+..+..+..-..  ..+.+..   . ..++|.+.+|+||++..  
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~--l~~~i~~---~-~~~dA~~~aDVVvLAVP--   69 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAA--LGPLITG---G-SNEDAAALADVVVLAVP--   69 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHh--hcccccc---C-ChHHHHhcCCEEEEecc--
Confidence            578999998 9999999999999998  9888866552222111111  1233443   2 34689999999999863  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv  166 (305)
                                    .+-+.++.+++...-.+-++|=.|||.
T Consensus        70 --------------~~a~~~v~~~l~~~~~~KIvID~tnp~   96 (211)
T COG2085          70 --------------FEAIPDVLAELRDALGGKIVIDATNPI   96 (211)
T ss_pred             --------------HHHHHhHHHHHHHHhCCeEEEecCCCc
Confidence                          223444455555433467888889995

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.97  E-value=6.7e-05  Score=70.48  Aligned_cols=79  Identities=22%  Similarity=0.307  Sum_probs=60.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      .|||+|||+ |.+|.++|..|...|+  +|.++|+++.                      .+++++++++|+||++..  
T Consensus         4 ~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp--   56 (308)
T PRK14619          4 PKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVS--   56 (308)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECC--
Confidence            469999998 9999999999999998  9999998641                      135677899999999852  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNP  165 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~--~p~aiviv~tNP  165 (305)
                                    ...++++++.+..+  .++.+++..|+.
T Consensus        57 --------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g   84 (308)
T PRK14619         57 --------------MKGVRPVAEQVQALNLPPETIIVTATKG   84 (308)
T ss_pred             --------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence                          12355566666653  467778777763

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.95  E-value=6e-05  Score=70.14  Aligned_cols=120  Identities=17%  Similarity=0.232  Sum_probs=71.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhh---hhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT---ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~---~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |||+|+|+ |.+|..+|..|...|+  +|.++++.+ .....   ..+........+.. ...++.+++.+++|+||++.
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~vilav   76 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVRPKRAKALRERGLVIRSDHGDAVVPG-PVITDPEELTGPFDLVILAV   76 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEecHHHHHHHHhCCeEEEeCCCeEEecc-eeecCHHHccCCCCEEEEEe
Confidence            58999999 9999999999999888  899999822 11110   01111000001111 11235555568999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE-eee
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG-VTM  193 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG-~t~  193 (305)
                      ...                .+.++++.+.++- ++.+|+.+.|.++....+     .+  .+|++++++ ++.
T Consensus        77 k~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l-----~~--~~~~~~v~~g~~~  126 (305)
T PRK12921         77 KAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQL-----EP--YFGRERVLGGVVF  126 (305)
T ss_pred             ccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHH-----HH--hCCcccEEEEEEE
Confidence            321                1344555555543 567788889998754322     22  267777774 443

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=97.95  E-value=0.00012  Score=68.72  Aligned_cols=111  Identities=18%  Similarity=0.167  Sum_probs=70.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchh-hhhhhcccCCceEEEEec-CCC---HHHHhC--CCCEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGV-TADISHMDTNAVVRGFLG-QQQ---LEDALT--GMDIV  118 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~-~~DL~~~~~~~~v~~~~~-t~d---~~~al~--~aDiV  118 (305)
                      |||.|+||+|++|++++..|+..|+  +|+++|... .... ...+.+.. ...+..+.. -+|   +.++++  ++|+|
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   77 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALLTEILHDHAIDTV   77 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhc-CCCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence            5899999999999999999999988  899998643 1111 11121111 111111111 122   334454  68999


Q ss_pred             EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN  160 (305)
Q Consensus       119 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aivi  160 (305)
                      |.+|+.....  .....+.+..|+.....+++.+.+.+.+.+|.
T Consensus        78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~  121 (338)
T PRK10675         78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIF  121 (338)
T ss_pred             EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence            9998754311  12345678889999999999998876444443

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=97.94  E-value=9e-05  Score=68.30  Aligned_cols=108  Identities=19%  Similarity=0.161  Sum_probs=70.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCC-CEEEEcCCCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM-DIVIIPAGVPR  126 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~a-DiVIi~ag~~~  126 (305)
                      +|.|+|++|++|++++..|++.|+  +|+.+|.........+ .+.. ....... ......+.+++. |.||.+++...
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~-~~~~d~~-~~~~~~~~~~~~~d~vih~aa~~~   76 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVE-FVVLDLT-DRDLVDELAKGVPDAVIHLAAQSS   76 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccc-eeeeccc-chHHHHHHHhcCCCEEEEccccCc
Confidence            599999999999999999999998  9999998652111111 1110 0000000 001234556677 99999998654


Q ss_pred             CCCCch---hhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932          127 KPGMTR---DDLFNINAGIVKTLCEGIAKCCPKAIVN  160 (305)
Q Consensus       127 ~~g~~r---~d~~~~N~~i~~~i~~~I~~~~p~aivi  160 (305)
                      .++..+   .++...|+...+++++...+....-++.
T Consensus        77 ~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~  113 (314)
T COG0451          77 VPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVF  113 (314)
T ss_pred             hhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence            444322   3578899999999999999944333333

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.94  E-value=0.00011  Score=69.27  Aligned_cols=120  Identities=17%  Similarity=0.243  Sum_probs=73.0

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhh---hhhhcccCC---ceEEEEecCCCHHHHhCCC
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT---ADISHMDTN---AVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~---~DL~~~~~~---~~v~~~~~t~d~~~al~~a  115 (305)
                      |++.+|||+|+|+ |.+|..+|..|...|+  +|.+++++......   ..+......   ..+..   .++. ++...+
T Consensus         1 ~~~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~-~~~~~~   73 (313)
T PRK06249          1 MDSETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQA---YRSA-EDMPPC   73 (313)
T ss_pred             CCCcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceE---Ecch-hhcCCC
Confidence            4566789999999 9999999999999888  99999986521110   011100000   11222   1232 457889


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      |+||++.-..    .            ..++++.+... .|++.++...|=++.--     .+.+  -+|+.+|++-
T Consensus        74 D~vilavK~~----~------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e-----~l~~--~~~~~~v~~g  127 (313)
T PRK06249         74 DWVLVGLKTT----A------------NALLAPLIPQVAAPDAKVLLLQNGLGVEE-----QLRE--ILPAEHLLGG  127 (313)
T ss_pred             CEEEEEecCC----C------------hHhHHHHHhhhcCCCCEEEEecCCCCcHH-----HHHH--HCCCCcEEEE
Confidence            9999985221    1            12334444443 37888888889887542     2233  2677787744

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=97.93  E-value=6.1e-05  Score=68.79  Aligned_cols=99  Identities=20%  Similarity=0.262  Sum_probs=68.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCCCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKP  128 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~  128 (305)
                      |.|+||+|++|++++..|+..|+  +|+.++++.......  ..    ..+..... ....++++++|+||.+++.+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~--~~----~~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~   71 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGANT--KW----EGYKPWAP-LAESEALEGADAVINLAGEPIAD   71 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCcc--cc----eeeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence            57999999999999999999887  999999876211100  00    00111111 23357889999999999865432


Q ss_pred             C----CchhhHHHhhHHHHHHHHHHHHHhCCC
Q 021932          129 G----MTRDDLFNINAGIVKTLCEGIAKCCPK  156 (305)
Q Consensus       129 g----~~r~d~~~~N~~i~~~i~~~I~~~~p~  156 (305)
                      +    ....++.+.|+...+.+++.+.+.+..
T Consensus        72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~  103 (292)
T TIGR01777        72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK  103 (292)
T ss_pred             ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence            2    123456677999999999999988753

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=97.93  E-value=0.00011  Score=69.80  Aligned_cols=105  Identities=16%  Similarity=0.097  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh--hhhhhcccCCceEEEEec----CCCHHHHhCCCCEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLG----QQQLEDALTGMDIV  118 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~--~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDiV  118 (305)
                      ..+||.|+||+|++|++++..|++.|.  +|++++.+.....  ..++..   ..++..+..    ...+.+++++.|+|
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V   83 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV   83 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence            346999999999999999999999998  8888887542111  111211   122332211    12345667889999


Q ss_pred             EEcCCCCCCC---C-Cchhh-----HHHhhHHHHHHHHHHHHHhC
Q 021932          119 IIPAGVPRKP---G-MTRDD-----LFNINAGIVKTLCEGIAKCC  154 (305)
Q Consensus       119 Ii~ag~~~~~---g-~~r~d-----~~~~N~~i~~~i~~~I~~~~  154 (305)
                      |.+|+.....   . .+..+     .+..|+.....+++.+.+..
T Consensus        84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~  128 (353)
T PLN02896         84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK  128 (353)
T ss_pred             EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC
Confidence            9999864211   1 11222     23344577888888887764

>PLN02778 3,5-epimerase/4-reductase

Probab=97.92  E-value=0.00014  Score=67.97  Aligned_cols=91  Identities=21%  Similarity=0.188  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC--CCCEEEEc
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIP  121 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~  121 (305)
                      ...|||.|+||+|++|++++..|..+|+  +|++...+        +.+..            .+..+++  +.|+||.+
T Consensus         7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~--------~~~~~------------~v~~~l~~~~~D~ViH~   64 (298)
T PLN02778          7 SATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGR--------LENRA------------SLEADIDAVKPTHVFNA   64 (298)
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCc--------cCCHH------------HHHHHHHhcCCCEEEEC
Confidence            3457999999999999999999999988  77653221        11110            0112222  68999999


Q ss_pred             CCCCCCCC-----CchhhHHHhhHHHHHHHHHHHHHhCCC
Q 021932          122 AGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK  156 (305)
Q Consensus       122 ag~~~~~g-----~~r~d~~~~N~~i~~~i~~~I~~~~p~  156 (305)
                      |+....+.     ....+.+..|+....++++.+++.+..
T Consensus        65 Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~  104 (298)
T PLN02778         65 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV  104 (298)
T ss_pred             CcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            98643221     234667889999999999999988654

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.92  E-value=7.2e-05  Score=70.89  Aligned_cols=101  Identities=19%  Similarity=0.207  Sum_probs=63.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhh----hhhcccC------CceEEEEecCCCHHHHhCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA----DISHMDT------NAVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~----DL~~~~~------~~~v~~~~~t~d~~~al~~a  115 (305)
                      +|||+|||+ |.+|..+|..|...|+  +|.++|+++......    .+.+...      ..++..   +++. ++++++
T Consensus         2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~   74 (341)
T PRK08229          2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAF---STDP-AALATA   74 (341)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEe---ccCh-hhccCC
Confidence            579999999 9999999999999998  999999854110000    0000000      001221   3354 678999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 021932          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST  169 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~l  169 (305)
                      |+||++...+.                ..++++.+.+.. ++.+|+..+|..+..
T Consensus        75 D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~  113 (341)
T PRK08229         75 DLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA  113 (341)
T ss_pred             CEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence            99999863221                123445555553 677777788987753

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.91  E-value=0.00017  Score=70.68  Aligned_cols=111  Identities=20%  Similarity=0.196  Sum_probs=69.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhh----------hhcc----cCCceEEEEecCCCHHHH
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD----------ISHM----DTNAVVRGFLGQQQLEDA  111 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~D----------L~~~----~~~~~v~~~~~t~d~~~a  111 (305)
                      ++||+|||. |+||..+|..|+..|+  +|..+|+++.+-..+.          +...    .....+..   +++    
T Consensus         3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~~----   72 (415)
T PRK11064          3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRA---TTT----   72 (415)
T ss_pred             ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceee---ecc----
Confidence            469999998 9999999999999998  9999999862111110          1000    00111222   122    


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCccHHH
Q 021932          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNSTVPI  172 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~-tNPvd~lt~~  172 (305)
                      .++||+||++.+.|.+...      ..+...+.+.++.|.++. ++.+|++- |.|....-.+
T Consensus        73 ~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~  129 (415)
T PRK11064         73 PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQM  129 (415)
T ss_pred             cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHH
Confidence            3589999999988754321      124455666677777766 45555544 4577655443

>PLN02583 cinnamoyl-CoA reductase

Probab=97.90  E-value=0.00029  Score=65.48  Aligned_cols=111  Identities=16%  Similarity=0.113  Sum_probs=71.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch----hhhhhhcccCCceEEEEe----cCCCHHHHhCCCCEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTNAVVRGFL----GQQQLEDALTGMDIV  118 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g----~~~DL~~~~~~~~v~~~~----~t~d~~~al~~aDiV  118 (305)
                      ++|.|+||+|++|++++..|+..|+  +|++++++....    ...++...  ..++..+.    ...++.++++++|.|
T Consensus         7 k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~v   82 (297)
T PLN02583          7 KSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSGL   82 (297)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCEE
Confidence            4899999999999999999999998  898887643111    11222111  11222221    112456789999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEE
Q 021932          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNL  161 (305)
Q Consensus       119 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv  161 (305)
                      +.+++.+........+++..|+.....+++.+.+.. ...+|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~  126 (297)
T PLN02583         83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFT  126 (297)
T ss_pred             EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEe
Confidence            877654322111235678889999999999988763 3444443

>PLN02572 UDP-sulfoquinovose synthase

Probab=97.90  E-value=8.4e-05  Score=73.39  Aligned_cols=179  Identities=14%  Similarity=0.134  Sum_probs=96.9

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---ch------------hhhhhh---cccCCceEEEEe
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG------------VTADIS---HMDTNAVVRGFL  103 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g------------~~~DL~---~~~~~~~v~~~~  103 (305)
                      .+-+.+||.|+||+|++|++++..|+..|+  +|+++|....   ..            ....+.   +.. ...++.+.
T Consensus        43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~  119 (442)
T PLN02572         43 SSSKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYV  119 (442)
T ss_pred             ccccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEE
Confidence            344557999999999999999999999998  9999985321   00            000010   000 11222221


Q ss_pred             cC----CCHHHHhC--CCCEEEEcCCCCCCC-CC-c---hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec------CCC
Q 021932          104 GQ----QQLEDALT--GMDIVIIPAGVPRKP-GM-T---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS------NPV  166 (305)
Q Consensus       104 ~t----~d~~~al~--~aDiVIi~ag~~~~~-g~-~---r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t------NPv  166 (305)
                      +.    ..++++++  +.|+||.+|+....+ .. +   ....+..|+.....+++.+.+.+.+..++.+|      +|-
T Consensus       120 ~Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~  199 (442)
T PLN02572        120 GDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN  199 (442)
T ss_pred             CCCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC
Confidence            11    23445555  489999998653211 11 1   12345679999999999999887654444333      111


Q ss_pred             CccH--HH-HHHHHHHhC---CCCCCcEEEeeehhhHHHHHHHHHHhCCCCccee-EEEEcccC
Q 021932          167 NSTV--PI-AAEVFKKVG---TYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (305)
Q Consensus       167 d~lt--~~-~~~~~~~~s---~~p~~kviG~t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~hg  223 (305)
                      +.+.  ++ ..+.....+   -..|....|.+-+-..++....++..|++..-++ ..|.|.+.
T Consensus       200 ~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~  263 (442)
T PLN02572        200 IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT  263 (442)
T ss_pred             CCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence            0000  00 000000000   1122345555433333444455667788777776 67888653

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.90  E-value=0.00012  Score=73.99  Aligned_cols=117  Identities=14%  Similarity=0.066  Sum_probs=74.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhc-----cc--CCceEEEEec----CCCHHHH
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH-----MD--TNAVVRGFLG----QQQLEDA  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~-----~~--~~~~v~~~~~----t~d~~~a  111 (305)
                      +.+.|.|+||+|++|..++..|+..|+  +|++++++...  ....++.+     ..  ...++..+.+    ..++.++
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            345899999999999999999999998  89999887621  11111211     00  0112222211    1245567


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +.++|+||+++|............+..|......+++.+.+.+-..+|++.|
T Consensus       157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS  208 (576)
T PLN03209        157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS  208 (576)
T ss_pred             hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence            8999999999986533211222345668888899999988776555555444

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=97.89  E-value=0.00027  Score=66.82  Aligned_cols=106  Identities=16%  Similarity=0.100  Sum_probs=65.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEE----ecCCCHHHHhC--CCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDALT--GMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~----~~t~d~~~al~--~aDiVIi  120 (305)
                      |||.|+||+|++|++++..|+..|. ..++.+|.....+....+.+......+..+    ....++.++++  ++|+||.
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence            5899999999999999999998875 246667753311111111111001112211    11123445554  4799999


Q ss_pred             cCCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHh
Q 021932          121 PAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKC  153 (305)
Q Consensus       121 ~ag~~~~--~g~~r~d~~~~N~~i~~~i~~~I~~~  153 (305)
                      +|+....  ......+.+..|+.....+++.+.++
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~  114 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY  114 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence            9986421  11234567889999999999999875

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=97.88  E-value=0.00014  Score=68.73  Aligned_cols=112  Identities=16%  Similarity=0.029  Sum_probs=70.8

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcc--cCCceEEEEe----cCCCHHHHh
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM--DTNAVVRGFL----GQQQLEDAL  112 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~--~~~~~v~~~~----~t~d~~~al  112 (305)
                      ++.+.+||.|+||+|++|++++..|+..|.  +|+++|....   ......+...  .....+..+.    ...++.+++
T Consensus         2 ~~~~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   79 (340)
T PLN02653          2 GDPPRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWL   79 (340)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHH
Confidence            456677999999999999999999999998  9999987541   1111111100  0011222211    112334455


Q ss_pred             CC--CCEEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCC
Q 021932          113 TG--MDIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCP  155 (305)
Q Consensus       113 ~~--aDiVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~p  155 (305)
                      ++  .|+||.+|+......  ......+..|+.....+++.+.+...
T Consensus        80 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~  126 (340)
T PLN02653         80 DDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ  126 (340)
T ss_pred             HHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence            54  599999998643211  12234456788889999999988874

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.87  E-value=0.00012  Score=69.21  Aligned_cols=98  Identities=15%  Similarity=0.352  Sum_probs=64.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhc----------ccCCceEEEEecCCCHHHHh-CCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH----------MDTNAVVRGFLGQQQLEDAL-TGM  115 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~----------~~~~~~v~~~~~t~d~~~al-~~a  115 (305)
                      |||+|||| |.+|+.++..|...|+  +|.++++++..  +..+..          ......++.   ++|+.+++ .++
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~   72 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHTT--FESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNA   72 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHHH--HHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCC
Confidence            58999999 9999999999999987  89999986521  111111          001112333   24666666 589


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHH-h-CCCcEEEEecCCCCc
Q 021932          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-C-CPKAIVNLISNPVNS  168 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~-~-~p~aiviv~tNPvd~  168 (305)
                      |+||++.-                ...+.++++.+.. + .++..++..+|=.+.
T Consensus        73 Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~  111 (326)
T PRK14620         73 TCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK  111 (326)
T ss_pred             CEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence            99999852                2335556666665 3 367777777877643

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=97.84  E-value=0.0001  Score=68.72  Aligned_cols=93  Identities=16%  Similarity=0.192  Sum_probs=62.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC--CCCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~  124 (305)
                      |||.|+||+|++|++++..|...|   +|+.+|+... ....|+.+.            ..+.+.++  ++|+||.+|+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~d~------------~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFSNP------------EGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCCCH------------HHHHHHHHhcCCCEEEECCcc
Confidence            589999999999999999998777   4677776431 011122221            12334555  58999999975


Q ss_pred             CCCC--CCchhhHHHhhHHHHHHHHHHHHHhCC
Q 021932          125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCP  155 (305)
Q Consensus       125 ~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p  155 (305)
                      ....  ..........|+.....+++.+.+.+.
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~   97 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVGA   97 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4221  122334456799999999999998763

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.84  E-value=0.00027  Score=65.58  Aligned_cols=101  Identities=20%  Similarity=0.236  Sum_probs=63.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhh---hhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVT---ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~---~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      |||+|+|+ |.+|..+|..|.+.|+  +|.++|+++.  ....   ..+.+..  ..... ...++.++ ++++|+||++
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~g~~~~~~~--~~~~~-~~~~~~~~-~~~~d~vila   73 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLDALNENGLRLEDGE--ITVPV-LAADDPAE-LGPQDLVILA   73 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHHHHHHcCCcccCCc--eeecc-cCCCChhH-cCCCCEEEEe
Confidence            58999999 9999999999999887  9999998541  1110   0110110  00111 11234434 4999999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCCccH
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTV  170 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~tNPvd~lt  170 (305)
                      ....                -+.++++.+..+ .++..|+...|.++...
T Consensus        74 ~k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~  107 (304)
T PRK06522         74 VKAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLE  107 (304)
T ss_pred             cccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence            6321                134445555544 36778888899987653

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.83  E-value=8.5e-05  Score=70.29  Aligned_cols=97  Identities=21%  Similarity=0.218  Sum_probs=61.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhc-------cc-CCceEEEEecCCCHHHHhCCCCE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-------MD-TNAVVRGFLGQQQLEDALTGMDI  117 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~-------~~-~~~~v~~~~~t~d~~~al~~aDi  117 (305)
                      +|||+|||+ |.+|+.++..|+..|+  +|.++|+++.......-.+       .. ....+..   +++++++++++|+
T Consensus         4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~aD~   77 (328)
T PRK14618          4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYP---TADPEEALAGADF   77 (328)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCCCE
Confidence            569999999 9999999999999998  9999999652111111000       00 0111332   2466788899999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       118 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                      ||++....                .++++++.   ..|..+++.++|..+
T Consensus        78 Vi~~v~~~----------------~~~~v~~~---l~~~~~vi~~~~Gi~  108 (328)
T PRK14618         78 AVVAVPSK----------------ALRETLAG---LPRALGYVSCAKGLA  108 (328)
T ss_pred             EEEECchH----------------HHHHHHHh---cCcCCEEEEEeeccc
Confidence            99985211                12333333   236677887888654

>PLN02240 UDP-glucose 4-epimerase

Probab=97.83  E-value=0.00032  Score=66.19  Aligned_cols=114  Identities=19%  Similarity=0.146  Sum_probs=71.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhccc--CCceEEEEec----CCCHHHHhC--C
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD--TNAVVRGFLG----QQQLEDALT--G  114 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~--~~~~v~~~~~----t~d~~~al~--~  114 (305)
                      +.+||.|+||+|++|++++..|+..|+  +|+++|....  ......+.+..  ....+..+.+    ..+++++++  +
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~   81 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR   81 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence            446999999999999999999999887  8999986431  11111111110  0112222111    123333444  6


Q ss_pred             CCEEEEcCCCCCC-CC-CchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932          115 MDIVIIPAGVPRK-PG-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVN  160 (305)
Q Consensus       115 aDiVIi~ag~~~~-~g-~~r~d~~~~N~~i~~~i~~~I~~~~p~aivi  160 (305)
                      .|+||.+++.... .. ....+.+..|+.....+++.+.+.+...++.
T Consensus        82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~  129 (352)
T PLN02240         82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVF  129 (352)
T ss_pred             CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence            8999999986421 11 2345678889999999999888766444443

>PRK07201 short chain dehydrogenase; Provisional

Probab=97.80  E-value=0.00031  Score=72.14  Aligned_cols=112  Identities=13%  Similarity=0.106  Sum_probs=71.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHh--CCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC----------CCHHHHhCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----------QQLEDALTG  114 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~--~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t----------~d~~~al~~  114 (305)
                      |||.|+||+|++|++++..|+.  .+.  +|++++++.......++.......+++.+.+.          .++ +.+++
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~-~~l~~   77 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADI-AELGD   77 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHH-HHhcC
Confidence            5899999999999999999984  555  99999986422221112111000122221111          122 33489


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Q 021932          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (305)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~  162 (305)
                      +|+||.+|+.... .....+....|+...+.+++.+.+...+.++.+.
T Consensus        78 ~D~Vih~Aa~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~S  124 (657)
T PRK07201         78 IDHVVHLAAIYDL-TADEEAQRAANVDGTRNVVELAERLQAATFHHVS  124 (657)
T ss_pred             CCEEEECceeecC-CCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEe
Confidence            9999999985422 2334556778999999999999887655555443

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=97.80  E-value=0.00043  Score=71.67  Aligned_cols=121  Identities=14%  Similarity=0.032  Sum_probs=72.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-CC---HHHHh--CCCC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ---LEDAL--TGMD  116 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-~d---~~~al--~~aD  116 (305)
                      +-+++||.|+||+|++|++++..|+..+...+|+.+|..........+........++.+.+. +|   ....+  .++|
T Consensus         3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D   82 (668)
T PLN02260          3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGID   82 (668)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence            345679999999999999999999887433389999974311111111110001223332211 22   21222  6899


Q ss_pred             EEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          117 IVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       117 iVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +||.+|+......  ....++...|+.....+++.+++.+.-..+|.+|
T Consensus        83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~S  131 (668)
T PLN02260         83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVS  131 (668)
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Confidence            9999998643211  1234567889999999999998876322344443

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=97.79  E-value=0.00016  Score=66.18  Aligned_cols=89  Identities=21%  Similarity=0.308  Sum_probs=65.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCC--CEEEEcCCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM--DIVIIPAGVP  125 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~a--DiVIi~ag~~  125 (305)
                      ||.|+||+|++|++++..|+..|+  +|++++...     .|+.+.            .+++++++++  |+||.+++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~~------------~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTDP------------EALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCCH------------HHHHHHHHhCCCCEEEECCccc
Confidence            689999999999999999999888  899988641     233221            1344566665  9999999864


Q ss_pred             CCCC--CchhhHHHhhHHHHHHHHHHHHHhCC
Q 021932          126 RKPG--MTRDDLFNINAGIVKTLCEGIAKCCP  155 (305)
Q Consensus       126 ~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~p  155 (305)
                      ....  ......+..|+.....+++.+.+...
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~   93 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA   93 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3221  23445677899999999999887654

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.78  E-value=0.00019  Score=68.48  Aligned_cols=99  Identities=18%  Similarity=0.191  Sum_probs=66.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc----cC-------CceEEEEecCCCHHHHhC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DT-------NAVVRGFLGQQQLEDALT  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~----~~-------~~~v~~~~~t~d~~~al~  113 (305)
                      .++||+|+|+ |.+|+.++..|...+   +++++..++..  ..++...    ..       ...+..   ++|+.++++
T Consensus         6 ~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~~--~~~i~~~~~~~~~l~~~~~l~~~i~~---t~d~~~a~~   76 (341)
T PRK12439          6 REPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAET--ADDINDNHRNSRYLGNDVVLSDTLRA---TTDFAEAAN   76 (341)
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHHH--HHHHHhcCCCcccCCCCcccCCCeEE---ECCHHHHHh
Confidence            3579999999 999999999999887   35677765421  1112110    00       112332   357778899


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 021932          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~  168 (305)
                      ++|+||++..                ...++++++++..+- ++..++.++|-++.
T Consensus        77 ~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~  116 (341)
T PRK12439         77 CADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ  116 (341)
T ss_pred             cCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence            9999999852                234666777777654 67778888887764

>PRK06194 hypothetical protein; Provisional

Probab=97.78  E-value=0.00092  Score=61.22  Aligned_cols=115  Identities=19%  Similarity=0.162  Sum_probs=66.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHhC------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT------  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~------  113 (305)
                      .++|.|+||+|++|++++..|+..|.  +|+++|++.  +.....++...  ..++..+.. -+|   ++++++      
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~   81 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERF   81 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  899999865  22222333321  122332211 122   223333      


Q ss_pred             -CCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHH----HHHHHHHHhCCC-----cEEEEecC
Q 021932          114 -GMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVK----TLCEGIAKCCPK-----AIVNLISN  164 (305)
Q Consensus       114 -~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~~----~i~~~I~~~~p~-----aiviv~tN  164 (305)
                       ..|+||.+||.....   ..+.   ...+..|+....    .+.+.+.+.+.+     +.++++|.
T Consensus        82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS  148 (287)
T PRK06194         82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTAS  148 (287)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCC
Confidence             469999999874321   1111   223555655444    444446555432     45555543

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=97.77  E-value=0.00033  Score=66.27  Aligned_cols=106  Identities=12%  Similarity=0.014  Sum_probs=66.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc---hhhhhhhc-c--cCCceEEEEec----CCCHHHHhCC--
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISH-M--DTNAVVRGFLG----QQQLEDALTG--  114 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~---g~~~DL~~-~--~~~~~v~~~~~----t~d~~~al~~--  114 (305)
                      +||.|+||+|++|++++..|+..|+  +|+++|+....   .....+.. .  .....+..+.+    ...+.+++++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   78 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK   78 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence            4899999999999999999999998  99999986421   11111110 0  00112222211    1134455664  


Q ss_pred             CCEEEEcCCCCCCC-C-CchhhHHHhhHHHHHHHHHHHHHhC
Q 021932          115 MDIVIIPAGVPRKP-G-MTRDDLFNINAGIVKTLCEGIAKCC  154 (305)
Q Consensus       115 aDiVIi~ag~~~~~-g-~~r~d~~~~N~~i~~~i~~~I~~~~  154 (305)
                      .|+||.+|+..... . ......+..|+.....+++.+.+.+
T Consensus        79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~  120 (343)
T TIGR01472        79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLG  120 (343)
T ss_pred             CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhC
Confidence            59999999864321 1 1123445667778889999988875

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.76  E-value=0.00012  Score=59.35  Aligned_cols=72  Identities=19%  Similarity=0.265  Sum_probs=47.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc--cCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~--~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ||+|+||+|++|..+..+|..++...-+.+++.....|+.+.-.+.  .....+....  .+. +.+.++|+||.|.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--ADP-EELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TSG-HHHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cch-hHhhcCCEEEecC
Confidence            7999999999999999999998877667777765534433222211  1122333321  243 6789999999995

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.75  E-value=0.00019  Score=68.70  Aligned_cols=71  Identities=24%  Similarity=0.369  Sum_probs=48.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCC------CCcEEEEEeCCC---Cchhhhhhh--ccc--C------CceEEEEecCCCH
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINP------LVSVLHLYDVVN---TPGVTADIS--HMD--T------NAVVRGFLGQQQL  108 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~------~~~el~L~D~~~---~~g~~~DL~--~~~--~------~~~v~~~~~t~d~  108 (305)
                      ||+|||+ |..|.++|..|..++      +..+|.|+.+++   -......+.  |..  .      ...++.   ++|+
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl   76 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL   76 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence            6999999 999999999999877      223999998843   111222222  111  1      123443   4588


Q ss_pred             HHHhCCCCEEEEcC
Q 021932          109 EDALTGMDIVIIPA  122 (305)
Q Consensus       109 ~~al~~aDiVIi~a  122 (305)
                      ++++++||+||++.
T Consensus        77 ~eal~~ADiIIlAV   90 (342)
T TIGR03376        77 VEAAKGADILVFVI   90 (342)
T ss_pred             HHHHhcCCEEEEEC
Confidence            89999999999985

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.74  E-value=0.00036  Score=67.16  Aligned_cols=115  Identities=20%  Similarity=0.247  Sum_probs=76.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC------chhh----hhhh----cccCCceEEEEecCCCHHHH
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGVT----ADIS----HMDTNAVVRGFLGQQQLEDA  111 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~------~g~~----~DL~----~~~~~~~v~~~~~t~d~~~a  111 (305)
                      .++|+|||- |+||..+|..++..|+  .++-+|+++.      .|+.    .++.    ......+++.   |+|+ +.
T Consensus         9 ~~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~   81 (436)
T COG0677           9 SATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EE   81 (436)
T ss_pred             ceEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hh
Confidence            379999998 9999999999999999  9999999871      2221    1111    1112345664   4576 66


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEE--EEecCCCCccHHHH
Q 021932          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV--NLISNPVNSTVPIA  173 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiv--iv~tNPvd~lt~~~  173 (305)
                      ++.||++|||..+|.+...      +-++..+.+-++.|.++-.++=+  +=.|-|....-.++
T Consensus        82 l~~~dv~iI~VPTPl~~~~------~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~  139 (436)
T COG0677          82 LKECDVFIICVPTPLKKYR------EPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVV  139 (436)
T ss_pred             cccCCEEEEEecCCcCCCC------CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHH
Confidence            8899999999988765422      12345566666777766644433  33367777654443

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.71  E-value=0.00021  Score=66.21  Aligned_cols=64  Identities=20%  Similarity=0.238  Sum_probs=45.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |||+|||. |.+|.+++..|...|+  +|.++|.++ ....+.+...      +..  .+++. +++++||+||++.
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~g~------~~~--~~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIERGL------VDE--ASTDL-SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCC------ccc--ccCCH-hHhcCCCEEEEcC
Confidence            58999998 9999999999999888  999999875 1111111110      111  12344 5789999999996

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=97.71  E-value=0.00036  Score=64.74  Aligned_cols=102  Identities=13%  Similarity=0.140  Sum_probs=63.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCC-HHHHh-----CCCCEEEEcC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ-LEDAL-----TGMDIVIIPA  122 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d-~~~al-----~~aDiVIi~a  122 (305)
                      |.|+||+|++|++++..|+..|+ ..+.++|..........+.+.+. .....   ..+ .++.+     .++|+||.+|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~-~d~~~---~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDI-ADYMD---KEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhh-hhhhh---HHHHHHHHhcccccCCccEEEECc
Confidence            78999999999999999998886 25667786532111011111110 00000   011 12222     3699999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP  155 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p  155 (305)
                      +.+..........+..|+....++++.+.+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~  109 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI  109 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence            854333333445678899999999999988764

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=97.70  E-value=0.00043  Score=67.21  Aligned_cols=115  Identities=19%  Similarity=0.142  Sum_probs=70.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--ch--hhhhhhcccCCce-EEE-EecCCCHHHHhC----
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG--VTADISHMDTNAV-VRG-FLGQQQLEDALT----  113 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g--~~~DL~~~~~~~~-v~~-~~~t~d~~~al~----  113 (305)
                      .+.+||.|+||+|++|+.++..|+..|+  +|++++++..  ..  ...++........ +.. .....++.++++    
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~  135 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD  135 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence            3346999999999999999999999998  9999998652  11  1111111100111 111 111123445566    


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ++|+||.+++.+...   ..+.+..|....+.+++.+++.+.+-+|.+.|
T Consensus       136 ~~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS  182 (390)
T PLN02657        136 PVDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGAKHFVLLSA  182 (390)
T ss_pred             CCcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCCCEEEEEee
Confidence            589999988753211   12345668888889999988876554544443

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=97.68  E-value=0.00057  Score=63.71  Aligned_cols=165  Identities=19%  Similarity=0.160  Sum_probs=103.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHh--CCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDAL--TGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al--~~aDiVIi~ag  123 (305)
                      |+|.|+|++|++||+.+..|++.|+  +++.+|... .|...-+.... ...+.+ +....-+.+.|  ...|.||..||
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~-~g~~~~v~~~~-~~f~~gDi~D~~~L~~vf~~~~idaViHFAa   76 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLS-NGHKIALLKLQ-FKFYEGDLLDRALLTAVFEENKIDAVVHFAA   76 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCC-CCCHHHhhhcc-CceEEeccccHHHHHHHHHhcCCCEEEECcc
Confidence            5899999999999999999999999  999999854 22211111100 011111 00000122222  47899999987


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-----cCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhh
Q 021932          124 VPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-----SNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDV  196 (305)
Q Consensus       124 ~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~-----tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds  196 (305)
                      ...-.  =+..++++..|+--...+++.+.+.+.+-+|+-.     .+|..+  ++ +|    ..-..|.+--|-+-|-+
T Consensus        77 ~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~--PI-~E----~~~~~p~NPYG~sKlm~  149 (329)
T COG1087          77 SISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTS--PI-SE----TSPLAPINPYGRSKLMS  149 (329)
T ss_pred             ccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCc--cc-CC----CCCCCCCCcchhHHHHH
Confidence            53211  1235788999999999999999999988777543     355442  11 11    12234556667776667


Q ss_pred             HHHHHHHHHHhCCCCccee-EEEEccc
Q 021932          197 VRANTFVAEVLGLDPREVD-VPVVGGH  222 (305)
Q Consensus       197 ~R~~~~la~~l~v~~~~V~-~~vlG~h  222 (305)
                      .+.-..+++..+.+-.-++ .-+.|-|
T Consensus       150 E~iL~d~~~a~~~~~v~LRYFN~aGA~  176 (329)
T COG1087         150 EEILRDAAKANPFKVVILRYFNVAGAC  176 (329)
T ss_pred             HHHHHHHHHhCCCcEEEEEecccccCC
Confidence            6777777777775554444 4455544

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.66  E-value=0.00038  Score=65.81  Aligned_cols=111  Identities=16%  Similarity=0.153  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHhCCCCcEEEEEeCCCC--c--------hh--hhhhhc----cc---------CCceEEEEecCCCHHHHh
Q 021932           58 IGQPLAMLMKINPLVSVLHLYDVVNT--P--------GV--TADISH----MD---------TNAVVRGFLGQQQLEDAL  112 (305)
Q Consensus        58 VGs~la~~L~~~~~~~el~L~D~~~~--~--------g~--~~DL~~----~~---------~~~~v~~~~~t~d~~~al  112 (305)
                      +|..+|..++..|+  +|+|+|+++.  .        +.  ..++.+    ..         ...+++... +.|+++++
T Consensus         1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~   77 (314)
T PRK08269          1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL   77 (314)
T ss_pred             CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence            57889999999999  9999999861  1        11  001000    00         123455431 22466889


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      ++||+||.+.              .+|.++.+.+..++.+.+ |++++  .||-..+...-+    ..... .|+|++|+
T Consensus        78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~l----a~~~~-~p~r~~g~  136 (314)
T PRK08269         78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDL----QRHVA-HPERFLNA  136 (314)
T ss_pred             ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHH----HhhcC-CcccEEEE
Confidence            9999999985              347788999999999998 66666  788777654322    22233 35788887


Q ss_pred             e
Q 021932          192 T  192 (305)
Q Consensus       192 t  192 (305)
                      .
T Consensus       137 H  137 (314)
T PRK08269        137 H  137 (314)
T ss_pred             e
Confidence            3

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=97.65  E-value=0.00016  Score=66.83  Aligned_cols=104  Identities=14%  Similarity=0.091  Sum_probs=66.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      +||+|+||+|||||+++-.|+..|+  +|..+|... .|....++|...+++..... .......+..+|-|+..|....
T Consensus        28 lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~f-tg~k~n~~~~~~~~~fel~~-hdv~~pl~~evD~IyhLAapas  103 (350)
T KOG1429|consen   28 LRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYF-TGRKENLEHWIGHPNFELIR-HDVVEPLLKEVDQIYHLAAPAS  103 (350)
T ss_pred             cEEEEecCcchHHHHHHHHHHhcCC--eEEEEeccc-ccchhhcchhccCcceeEEE-eechhHHHHHhhhhhhhccCCC
Confidence            6999999999999999999999997  999999854 23334455554344333221 1123467899999999876432


Q ss_pred             CCC--CchhhHHHhhHHHHHHHHHHHHHhC
Q 021932          127 KPG--MTRDDLFNINAGIVKTLCEGIAKCC  154 (305)
Q Consensus       127 ~~g--~~r~d~~~~N~~i~~~i~~~I~~~~  154 (305)
                      .++  .+-.+.+..|.-.........++.+
T Consensus       104 p~~y~~npvktIktN~igtln~lglakrv~  133 (350)
T KOG1429|consen  104 PPHYKYNPVKTIKTNVIGTLNMLGLAKRVG  133 (350)
T ss_pred             CcccccCccceeeecchhhHHHHHHHHHhC
Confidence            222  2334444555554555555555444

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=97.63  E-value=0.00028  Score=62.23  Aligned_cols=111  Identities=18%  Similarity=0.198  Sum_probs=69.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCCHHHHhCCC--CEEEEcCCCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGM--DIVIIPAGVP  125 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~a--DiVIi~ag~~  125 (305)
                      |.|+||+|++|+.++..|+..+.  +++.+.... ............ ..... .....++.+.+++.  |.||.+|+..
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~-~~~~d-l~~~~~~~~~~~~~~~d~vi~~a~~~   76 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKLNVE-FVIGD-LTDKEQLEKLLEKANIDVVIHLAAFS   76 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHTTEE-EEESE-TTSHHHHHHHHHHHTESEEEEEBSSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccceEE-EEEee-ccccccccccccccCceEEEEeeccc
Confidence            78999999999999999999998  666555443 211111111100 00000 01112455667777  9999999864


Q ss_pred             C--CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          126 R--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       126 ~--~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .  .......+.+..|+...+.+++.+.+....-++...|
T Consensus        77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS  116 (236)
T PF01370_consen   77 SNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSS  116 (236)
T ss_dssp             SHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccc
Confidence            2  1112346778889999999999999998744443333

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=97.61  E-value=0.00053  Score=63.40  Aligned_cols=103  Identities=13%  Similarity=0.134  Sum_probs=64.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHH----hCCCCEEEEcCCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA----LTGMDIVIIPAGV  124 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~a----l~~aDiVIi~ag~  124 (305)
                      |.|+||+|++|++++..|...|.. +|+++|.........++........+.   ....++..    +.+.|+||.+|+.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~D~vvh~A~~   76 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGIT-DILVVDNLRDGHKFLNLADLVIADYID---KEDFLDRLEKGAFGKIEAIFHQGAC   76 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCc-eEEEEecCCCchhhhhhhheeeeccCc---chhHHHHHHhhccCCCCEEEECccc
Confidence            579999999999999999988852 788888654211111111100000111   01112222    2479999999986


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCC
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCP  155 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p  155 (305)
                      ......+..+.+..|+.....+++.+.+...
T Consensus        77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~  107 (314)
T TIGR02197        77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI  107 (314)
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4322233455678899999999999988764

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.60  E-value=0.0013  Score=58.54  Aligned_cols=36  Identities=25%  Similarity=0.272  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.++|.|+||+|.+|..++..|++.|.  +|++++++.
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~   39 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNE   39 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            445999999999999999999999998  899999876

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.59  E-value=0.00043  Score=63.34  Aligned_cols=96  Identities=14%  Similarity=0.175  Sum_probs=61.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ++||+|||+ |.+|..++..|...+. ..++.++|+++..  ...+.+..   .+..   ..+..+.++++|+||++.. 
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~---~~~~~~~~~~advVil~v~-   71 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRA---ATDNQEAAQEADVVVLAVK-   71 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence            579999998 9999999999988773 2378999986521  11122210   1121   2345677899999999852 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                                     ...++++++.+..+. +..|+..+|-+.
T Consensus        72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~   98 (267)
T PRK11880         72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT   98 (267)
T ss_pred             ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence                           123455555555444 456777777654

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.59  E-value=0.0006  Score=65.41  Aligned_cols=112  Identities=21%  Similarity=0.250  Sum_probs=74.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEE----ecCCCHHHHhCCCCEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIVI  119 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~----~~t~d~~~al~~aDiVI  119 (305)
                      ++.++.|+||+|++|.+++..|.+++...||.++|.... ...-.|.... ....++..    ....+...+++++ .|+
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv   80 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVV   80 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEE
Confidence            345899999999999999999999885669999998662 1111111110 11222221    1123567889999 777


Q ss_pred             EcCCCCC-CCCC-chhhHHHhhHHHHHHHHHHHHHhCCCcE
Q 021932          120 IPAGVPR-KPGM-TRDDLFNINAGIVKTLCEGIAKCCPKAI  158 (305)
Q Consensus       120 i~ag~~~-~~g~-~r~d~~~~N~~i~~~i~~~I~~~~p~ai  158 (305)
                      +++..+. ..++ .|......|++..+.+.+.+.+.+-+..
T Consensus        81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~l  121 (361)
T KOG1430|consen   81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRL  121 (361)
T ss_pred             EeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEE
Confidence            7654332 2223 3666778899999999999999985443

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.58  E-value=0.00048  Score=64.60  Aligned_cols=68  Identities=24%  Similarity=0.246  Sum_probs=47.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +||+|||+ |.+|..++..|...++..+|.++|+++. ...+.+   ..  .....   ..+.+++++++|+||++..
T Consensus         7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~---~g--~~~~~---~~~~~~~~~~aDvViiavp   75 (307)
T PRK07502          7 DRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARARE---LG--LGDRV---TTSAAEAVKGADLVILCVP   75 (307)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh---CC--CCcee---cCCHHHHhcCCCEEEECCC
Confidence            58999998 9999999999998886558999998752 111111   11  00111   1345678899999999974

>PRK07680 late competence protein ComER; Validated

Probab=97.58  E-value=0.00055  Score=63.13  Aligned_cols=97  Identities=14%  Similarity=0.204  Sum_probs=64.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~--~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      |||+|||+ |.+|..++..|...+.  ..+|.++|++...  ...+.+.  ...+...   .+..+.++++|+||++.- 
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~--~~g~~~~---~~~~~~~~~aDiVilav~-   71 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKER--YPGIHVA---KTIEEVISQSDLIFICVK-   71 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHH--cCCeEEE---CCHHHHHHhCCEEEEecC-
Confidence            48999998 9999999999988874  2479999986521  1222221  1123322   345677899999999861 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd  167 (305)
                                     -..+.++++.+..+- ++.+|+-++|++.
T Consensus        72 ---------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         72 ---------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                           122445555555543 5678888888875

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.56  E-value=0.0014  Score=63.47  Aligned_cols=150  Identities=21%  Similarity=0.137  Sum_probs=82.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccC-CceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++||.|||+ |+||+.+|..|++++. .+|.+.|+... ...+.+..+... ...+.. .....+.+.+++.|+||.++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~-~d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDA-ADVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEecc-cChHHHHHHHhcCCEEEEeCC
Confidence            469999999 9999999999999885 59999999752 122222221110 011111 111245688899999999975


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe---e---ehhhH
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV---T---MLDVV  197 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~---t---~Lds~  197 (305)
                      ...            +.    .+++.+.+.+-+  ++-.|+-.+.. ...-+.++++      .+.++   .   -+++.
T Consensus        78 ~~~------------~~----~i~ka~i~~gv~--yvDts~~~~~~-~~~~~~a~~A------git~v~~~G~dPGi~nv  132 (389)
T COG1748          78 PFV------------DL----TILKACIKTGVD--YVDTSYYEEPP-WKLDEEAKKA------GITAVLGCGFDPGITNV  132 (389)
T ss_pred             chh------------hH----HHHHHHHHhCCC--EEEcccCCchh-hhhhHHHHHc------CeEEEcccCcCcchHHH
Confidence            321            22    344444444433  44455555443 3223333333      23333   1   24444


Q ss_pred             HHHHHHHHHhCCCCcceeEEE--EcccCC
Q 021932          198 RANTFVAEVLGLDPREVDVPV--VGGHAG  224 (305)
Q Consensus       198 R~~~~la~~l~v~~~~V~~~v--lG~hg~  224 (305)
                      -+.+. ++.+.=..++++.|+  +|+||+
T Consensus       133 ~a~~a-~~~~~~~i~si~iy~g~~g~~~~  160 (389)
T COG1748         133 LAAYA-AKELFDEIESIDIYVGGLGEHGD  160 (389)
T ss_pred             HHHHH-HHHhhccccEEEEEEecCCCCCC
Confidence            33444 444443556665554  558883

>PLN02686 cinnamoyl-CoA reductase

Probab=97.56  E-value=0.00047  Score=66.26  Aligned_cols=120  Identities=12%  Similarity=0.128  Sum_probs=73.4

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhhhhcc---c-CCceEEEEe----cCCCHHHHh
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM---D-TNAVVRGFL----GQQQLEDAL  112 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~DL~~~---~-~~~~v~~~~----~t~d~~~al  112 (305)
                      ...+.++|.|+||+|++|++++..|+..|+  +|+++..+... ....++...   . ....+..+.    ...++.+++
T Consensus        49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i  126 (367)
T PLN02686         49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAF  126 (367)
T ss_pred             cCCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence            445567999999999999999999999998  88776554311 111122110   0 001222211    112355678


Q ss_pred             CCCCEEEEcCCCCCCCCC--chhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRKPGM--TRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~--~r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~t  163 (305)
                      +++|.||.+++.....+.  ....+...|+...+++++.+.+. +.+-+|+..|
T Consensus       127 ~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS  180 (367)
T PLN02686        127 DGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSS  180 (367)
T ss_pred             HhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEecc
Confidence            899999998875322221  12345567899999999998876 3444444333

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=97.56  E-value=0.00064  Score=62.84  Aligned_cols=108  Identities=19%  Similarity=0.123  Sum_probs=68.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chh-hhhhhcccCCceEEEEec----CCCHHHHhC--CCCEEE
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV-TADISHMDTNAVVRGFLG----QQQLEDALT--GMDIVI  119 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~-~~DL~~~~~~~~v~~~~~----t~d~~~al~--~aDiVI  119 (305)
                      ||.|+||+|++|..++..|.+.+.  +|+++|.... ... ..++.+.   ..+..+..    ..+++++++  +.|+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~d~vv   75 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI---TRVTFVEGDLRDRELLDRLFEEHKIDAVI   75 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc---cceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence            689999999999999999999888  8888886431 111 1111111   01222111    122334443  699999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN  160 (305)
Q Consensus       120 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aivi  160 (305)
                      .++|.....  .....+.+..|+.....+++.+.+.+...++.
T Consensus        76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~  118 (328)
T TIGR01179        76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIF  118 (328)
T ss_pred             ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEE
Confidence            999864321  12334566789999999999888776554443

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PLN02253 xanthoxin dehydrogenase

Probab=97.56  E-value=0.003  Score=57.68  Aligned_cols=115  Identities=20%  Similarity=0.251  Sum_probs=64.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHHh------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al------  112 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|.+..  .....++..   ..++..+. .-+|   .++++      
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~   91 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDK   91 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  9999998652  111222221   11222111 1112   22223      


Q ss_pred             -CCCCEEEEcCCCCCCC-C----Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          113 -TGMDIVIIPAGVPRKP-G----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~-g----~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                       ...|++|.++|..... +    .+   -...+..|+.....+.+.+.+.   ...+.+++++.
T Consensus        92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS  155 (280)
T PLN02253         92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCS  155 (280)
T ss_pred             hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecC
Confidence             3689999999864321 1    11   2334566755444444433322   12355555543

>PRK05865 hypothetical protein; Provisional

Probab=97.55  E-value=0.0004  Score=73.56  Aligned_cols=104  Identities=18%  Similarity=0.157  Sum_probs=70.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      |||.|+||+|++|++++..|+..|+  +|+++|.+....    +.. . ...+.. .....++.++++++|+||.+|+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~-v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~   72 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-S-ADFIAADIRDATAVESAMTGADVVAHCAWVR   72 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-C-ceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence            5899999999999999999999998  999999754110    000 0 011111 111124556789999999999753


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv  166 (305)
                      ..       ....|+.....+++.+.+.+.. .++.+|.+.
T Consensus        73 ~~-------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~  105 (854)
T PRK05865         73 GR-------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH  105 (854)
T ss_pred             cc-------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence            21       3467888889999998877644 455556553

>PRK08643 acetoin reductase; Validated

Probab=97.52  E-value=0.0045  Score=55.57  Aligned_cols=115  Identities=20%  Similarity=0.233  Sum_probs=65.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHH-------hC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------LT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-------l~  113 (305)
                      +++.|+||+|.+|..++..|++.|.  +|+++|.+..  .....++.+..  ..+..+.. -++   +.+.       +.
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999997  8999998652  22222333211  12221110 112   1122       24


Q ss_pred             CCCEEEEcCCCCCC-CC--Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 021932          114 GMDIVIIPAGVPRK-PG--MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNP  165 (305)
Q Consensus       114 ~aDiVIi~ag~~~~-~g--~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tNP  165 (305)
                      +.|++|.++|.... +-  .+   -...+..|+..    .+.+.+.+.+..+++.++++|..
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  140 (256)
T PRK08643         79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQ  140 (256)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence            68999999986422 11  11   12334556544    34444444444445666666643

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.51  E-value=0.00083  Score=60.35  Aligned_cols=114  Identities=18%  Similarity=0.225  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCCH---HHHh-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQL---EDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d~---~~al-------  112 (305)
                      .+++.|+||+|.+|..++..|++.|.  +|++++.++.  .....++.+.  ..++..+.. -+|.   ++++       
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKA--GGKAIGVAMDVTNEDAVNAGIDKVAERF   82 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhc--CceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  8999998762  2222333332  122322211 1221   1222       


Q ss_pred             CCCCEEEEcCCCCCCC---C---CchhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRKP---G---MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g---~~r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ...|+||.++|.....   .   +...+.+..|+..    .+.+.+.+.+..+.+.++++|
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s  143 (262)
T PRK13394         83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG  143 (262)
T ss_pred             CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence            3489999999864211   1   1123345556665    666666663333334455554

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.51  E-value=0.00074  Score=61.77  Aligned_cols=95  Identities=15%  Similarity=0.261  Sum_probs=60.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEE-eCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLY-DVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~--~~el~L~-D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      |||++||. |.+|..++..|+..++  ..+|+++ |+++.+  ...+...    .+..   ..+..++++++|+||++..
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~----g~~~---~~~~~e~~~~aDvVil~v~   70 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSL----GVKT---AASNTEVVKSSDVIILAVK   70 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHc----CCEE---eCChHHHHhcCCEEEEEEC
Confidence            68999998 9999999999998875  4578888 765422  1222221    1222   1345677899999999861


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd  167 (305)
                       |               +.++++.+.+.... |+.+++..++...
T Consensus        71 -~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~~   99 (266)
T PLN02688         71 -P---------------QVVKDVLTELRPLLSKDKLLVSVAAGIT   99 (266)
T ss_pred             -c---------------HHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence             2               22444445555443 5666665555554

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.48  E-value=0.00073  Score=66.75  Aligned_cols=66  Identities=24%  Similarity=0.364  Sum_probs=47.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |||+||||+|.+|..++..|...|+  +|.++|+++...  .++.... .  +..   +++.++++.++|+||++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~--~~~a~~~-g--v~~---~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKG--KEVAKEL-G--VEY---ANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHH--HHHHHHc-C--Cee---ccCHHHHhccCCEEEEec
Confidence            5899998559999999999999887  899999875221  1111111 1  121   245678899999999986

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.48  E-value=0.00072  Score=62.88  Aligned_cols=66  Identities=18%  Similarity=0.252  Sum_probs=47.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .+||+|||. |.+|..++..|+..|+  +|.++|+++...  ..+....    +..   ..+++++++++|+||++..
T Consensus         2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~~~g----~~~---~~~~~e~~~~~d~vi~~vp   67 (296)
T PRK11559          2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAV--AEVIAAG----AET---ASTAKAVAEQCDVIITMLP   67 (296)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence            468999998 9999999999999888  899999875221  1111111    111   2356788899999999863

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.47  E-value=0.0025  Score=56.38  Aligned_cols=115  Identities=17%  Similarity=0.196  Sum_probs=64.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecC-CC---HHHHh-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQ-QQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t-~d---~~~al-------  112 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++.  .....++...   ..+..+... ++   +.+.+       
T Consensus         6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (237)
T PRK07326          6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF   80 (237)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999998887  8999998752  1122233221   122221111 12   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecCC
Q 021932          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNP  165 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~I~~~--~p~aiviv~tNP  165 (305)
                      ...|+||.++|.....   ..+.   .+.+..|+.....+.+.+.+.  ...+.++++|..
T Consensus        81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (237)
T PRK07326         81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL  141 (237)
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence            3789999998754321   1122   234555655554544444332  233556666543

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.46  E-value=0.00092  Score=62.58  Aligned_cols=95  Identities=18%  Similarity=0.203  Sum_probs=60.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      |||+|||. |.+|..++..|...++  +|.++|+++..  +..+....    ........++.+.++++|+||++...  
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g----~~~~~s~~~~~~~~~~~dvIi~~vp~--   69 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDR----TTGVANLRELSQRLSAPRVVWVMVPH--   69 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcC----CcccCCHHHHHhhcCCCCEEEEEcCc--
Confidence            58999998 9999999999999998  99999987622  12222211    01111111333456789999998521  


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 021932          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (305)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPv  166 (305)
                                    ..++++++.+.... ++.+++..+|..
T Consensus        70 --------------~~~~~v~~~l~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        70 --------------GIVDAVLEELAPTLEKGDIVIDGGNSY   96 (298)
T ss_pred             --------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                          13455555665554 667787777654

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.46  E-value=0.00074  Score=65.33  Aligned_cols=54  Identities=19%  Similarity=0.361  Sum_probs=44.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ..+||+|||+.|.+|..++..|...|+  +|.++|++..                      ++.++++++||+||++.
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav  150 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV  150 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence            346999999559999999999999998  8999997420                      12457789999999996

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.44  E-value=0.00031  Score=57.81  Aligned_cols=102  Identities=21%  Similarity=0.243  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ..+||+|||+ |.||.+++..|...|+  +|.-+-... ...+..+.+..  .....    .++++.++++|++|++.. 
T Consensus         9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~--~~~~~----~~~~~~~~~aDlv~iavp-   77 (127)
T PF10727_consen    9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFI--GAGAI----LDLEEILRDADLVFIAVP-   77 (127)
T ss_dssp             ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC----TT---------TTGGGCC-SEEEE-S--
T ss_pred             CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-ccccccccccc--ccccc----cccccccccCCEEEEEec-
Confidence            4569999999 9999999999999998  666654322 11222222221  11121    134578899999999962 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHh--C-CCcEEEEec--CCCCccHHH
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKC--C-PKAIVNLIS--NPVNSTVPI  172 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~--~-p~aiviv~t--NPvd~lt~~  172 (305)
                          +           ..+.+++++|.++  - |+.+|+=.|  -+++++.++
T Consensus        78 ----D-----------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~  115 (127)
T PF10727_consen   78 ----D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA  115 (127)
T ss_dssp             ----C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred             ----h-----------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence                1           1367788888877  2 454544443  667777664

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.44  E-value=0.001  Score=63.98  Aligned_cols=68  Identities=18%  Similarity=0.228  Sum_probs=46.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +||+|||. |.+|.+++..|...|+  ++.++|.+........-.....   ...  .++++++++++||+||++.
T Consensus         1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~~---~~~--~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFGV---IDE--LAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCCC---Ccc--cccCHHHHhcCCCEEEEeC
Confidence            37999998 9999999999999998  7788888752211110000000   010  1245678899999999986

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.44  E-value=0.0046  Score=55.57  Aligned_cols=36  Identities=33%  Similarity=0.522  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.+++.|+||+|.+|..++..|+.+|.  +|+++++++
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~   45 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE   45 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            446999999999999999999999998  899999865

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.44  E-value=0.0011  Score=59.22  Aligned_cols=112  Identities=15%  Similarity=0.193  Sum_probs=64.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHHh-------C
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------T  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al-------~  113 (305)
                      ++|.|+|++|.+|..++..|+..|.  +|++++++..  .....++...  ..++..+. .-.|   ..+++       .
T Consensus         5 ~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   80 (258)
T PRK12429          5 KVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKA--GGKAIGVAMDVTDEEAINAGIDYAVETFG   80 (258)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999998  9999998762  2222333221  11222211 1112   22222       3


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +.|+||.++|......   .+   -.+.+..|+..    .+.+.+.+.+..... ++++|
T Consensus        81 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~is  139 (258)
T PRK12429         81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGR-IINMA  139 (258)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeE-EEEEc
Confidence            6899999998642211   11   12234445544    666666666555443 44444

>PRK12320 hypothetical protein; Provisional

Probab=97.44  E-value=0.0012  Score=68.60  Aligned_cols=95  Identities=14%  Similarity=0.067  Sum_probs=63.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      |||.|+||+|++|++++..|+..|+  +|..+|.....     ..+.. ...++.-.....+.++++++|+||.+++...
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~-ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~~   72 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPR-VDYVCASLRNPVLQELAGEADAVIHLAPVDT   72 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCC-ceEEEccCCCHHHHHHhcCCCEEEEcCccCc
Confidence            5899999999999999999999998  99999975411     11100 0111110001124566789999999997531


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhCC
Q 021932          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCP  155 (305)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~p  155 (305)
                        .    +....|+....++++.+++.+.
T Consensus        73 --~----~~~~vNv~Gt~nLleAA~~~Gv   95 (699)
T PRK12320         73 --S----APGGVGITGLAHVANAAARAGA   95 (699)
T ss_pred             --c----chhhHHHHHHHHHHHHHHHcCC
Confidence              1    1124688889999999888764

>TIGR01746 Thioester-redct thioester reductase domain

Probab=97.43  E-value=0.0015  Score=61.18  Aligned_cols=113  Identities=12%  Similarity=0.047  Sum_probs=71.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhh-h----hhc-----ccCC-ceEEEEecC----------C
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-D----ISH-----MDTN-AVVRGFLGQ----------Q  106 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~-D----L~~-----~~~~-~~v~~~~~t----------~  106 (305)
                      +|.|+||+|++|++++..|+..+...+|+++.+......+. .    +..     .... .++..+.+.          .
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            48899999999999999999888544899998765211111 1    110     0000 234433221          1


Q ss_pred             CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 021932          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (305)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv  161 (305)
                      ++.+..+++|+||.+++.... .....++...|+.....+++...+...+.++.+
T Consensus        81 ~~~~~~~~~d~vih~a~~~~~-~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~i  134 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVNW-VYPYSELRAANVLGTREVLRLAASGRAKPLHYV  134 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEecc-CCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEE
Confidence            244556889999999875421 223445667899999999998887765544433

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.00089  Score=60.42  Aligned_cols=115  Identities=22%  Similarity=0.257  Sum_probs=63.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhcccCCceEEE-EecCCCHHHHh--------CCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG-FLGQQQLEDAL--------TGM  115 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~~~~~~~v~~-~~~t~d~~~al--------~~a  115 (305)
                      +++.|+||+|.+|..++..|++.|.  +|+++|++...  ....++.... ..-+.. +....+.++.+        ...
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGAGN-AWTGALDVTDRAAWDAALADFAAATGGRL   78 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-eEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            4799999999999999999999997  89999986521  1111111100 000111 11111222222        346


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHH---hCCCcEEEEecC
Q 021932          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAK---CCPKAIVNLISN  164 (305)
Q Consensus       116 DiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~---~~p~aiviv~tN  164 (305)
                      |+||.++|......   .+   -...+..|+.....+.+.+.+   ..+.+.+++++.
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  136 (260)
T PRK08267         79 DVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSS  136 (260)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence            99999998753221   11   234566677655555555432   233455555554

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.43  E-value=0.0075  Score=54.24  Aligned_cols=117  Identities=13%  Similarity=0.161  Sum_probs=66.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCCH---HHH-------hC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQL---EDA-------LT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d~---~~a-------l~  113 (305)
                      ++|.|+||+|.+|..++..|++.|.  +|+++|.+..  .....++.......++..+.. .++.   ..+       +.
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999997  9999998652  222222322110112222111 1221   112       24


Q ss_pred             CCCEEEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 021932          114 GMDIVIIPAGVPRKP---GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNP  165 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tNP  165 (305)
                      ..|+||.++|.+...   ..+.   ...+..|+..    .+.+.+.+.+..+++.++.++..
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~  142 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSK  142 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence            679999999865321   1122   2234455543    45566666555545566666553

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=97.42  E-value=0.0011  Score=59.88  Aligned_cols=112  Identities=16%  Similarity=0.113  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec--C---CCHHHHh-CCCCEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG--Q---QQLEDAL-TGMDIV  118 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~--t---~d~~~al-~~aDiV  118 (305)
                      +++||.|+||+|++|..++..|+..|+  +|+++.++....... +..   ...+..+.+  +   .++.+++ .++|+|
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-~~~---~~~~~~~~~Dl~d~~~~l~~~~~~~~d~v   89 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS-LPQ---DPSLQIVRADVTEGSDKLVEAIGDDSDAV   89 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh-ccc---CCceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence            356999999999999999999999888  888776654211110 111   011211110  1   1344566 689999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       119 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      |.++|.....+.  .+.+..|......+++.+.+....-+|.+.|.
T Consensus        90 i~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         90 ICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             EECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            998875422111  11123455556777888777665545554443

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.42  E-value=0.00067  Score=63.04  Aligned_cols=64  Identities=14%  Similarity=0.246  Sum_probs=46.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ||+|||. |.+|+.++..|+..|+  +|.++|+++..  ...+....    ...   ..+.++++++||+||++..
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g----~~~---~~~~~~~~~~aDivi~~vp   64 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAG----AVT---AETARQVTEQADVIFTMVP   64 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCC----Ccc---cCCHHHHHhcCCEEEEecC
Confidence            5999998 9999999999999998  99999987521  11122211    111   2345688999999999863

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.39  E-value=0.0037  Score=57.66  Aligned_cols=117  Identities=17%  Similarity=0.178  Sum_probs=75.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe----cCCCHHHH-----
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL----GQQQLEDA-----  111 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~----~t~d~~~a-----  111 (305)
                      ..+.+.+.|+|||+-+|..+|..|+.+|+  .|+|+.+++  +...+.+|++.. ...+..+.    ..++.+..     
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~   79 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELK   79 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHH
Confidence            34556999999999999999999999999  999999987  566667777643 22222211    11122111     


Q ss_pred             --hCCCCEEEEcCCCCCCCC------CchhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932          112 --LTGMDIVIIPAGVPRKPG------MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       112 --l~~aDiVIi~ag~~~~~g------~~r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t  163 (305)
                        .-..|+.|.+||...-..      .+-.+++.-|+-.    .+.+.+.+.+.. .+-||+++
T Consensus        80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~  142 (265)
T COG0300          80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIG  142 (265)
T ss_pred             hcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEe
Confidence              126899999999753221      2235567777654    455555666544 34555554

>PRK07102 short chain dehydrogenase; Provisional

Probab=97.38  E-value=0.003  Score=56.36  Aligned_cols=115  Identities=18%  Similarity=0.052  Sum_probs=66.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh----CCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL----TGMD  116 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al----~~aD  116 (305)
                      ++|.|+||+|.+|..++..|++.|.  +|+++|+++.  .....++.... ..++..+.. -+|   .++.+    +..|
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d   78 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPD   78 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence            5899999999999999999999998  8999998762  22222332211 123332211 112   22222    2459


Q ss_pred             EEEEcCCCCCC---CCCchh---hHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          117 IVIIPAGVPRK---PGMTRD---DLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       117 iVIi~ag~~~~---~g~~r~---d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                      ++|.++|....   ...+..   +.+..|+.....+.+.+.++   ...+.++++|-
T Consensus        79 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  135 (243)
T PRK07102         79 IVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISS  135 (243)
T ss_pred             EEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence            99999885321   122222   34566766655565555443   22355555553

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.37  E-value=0.0036  Score=58.17  Aligned_cols=39  Identities=18%  Similarity=0.181  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .....++|.|+||+|.+|..++..|+.+|.  +|+++|++.
T Consensus        36 ~~~~~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~   74 (293)
T PRK05866         36 VDLTGKRILLTGASSGIGEAAAEQFARRGA--TVVAVARRE   74 (293)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            333446899999999999999999999998  999999875

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.37  E-value=0.00076  Score=56.15  Aligned_cols=118  Identities=18%  Similarity=0.212  Sum_probs=72.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhh-----hhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-----DISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~-----DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      |+|+|+ |.+|..+|..|.+.+.  +|.+++..+ ....+     .+.+......+.......+..+..+.+|+||+|.-
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            789999 9999999999999888  999999865 11111     11111101112211111222246799999999852


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE-eee
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG-VTM  193 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG-~t~  193 (305)
                      .                .-.++.++.++.+. |++.++.+-|=++..-     .+.+.  +|+.+|++ ++.
T Consensus        77 a----------------~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~-----~l~~~--~~~~~v~~g~~~  125 (151)
T PF02558_consen   77 A----------------YQLEQALQSLKPYLDPNTTIVSLQNGMGNEE-----VLAEY--FPRPRVLGGVTT  125 (151)
T ss_dssp             G----------------GGHHHHHHHHCTGEETTEEEEEESSSSSHHH-----HHHCH--STGSGEEEEEEE
T ss_pred             c----------------cchHHHHHHHhhccCCCcEEEEEeCCCCcHH-----HHHHH--cCCCcEEEEEEe
Confidence            1                11345666777776 6778888888877653     23332  56678874 444

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.37  E-value=0.0015  Score=58.33  Aligned_cols=114  Identities=17%  Similarity=0.206  Sum_probs=66.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEec-CCC---HHHHh------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al------  112 (305)
                      .+++.|+||+|++|..++..|+..|.  +|++++++..   .....++....  .++..+.. -++   .++.+      
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE   81 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            35899999999999999999999998  8888887541   11122232211  12221111 112   21222      


Q ss_pred             -CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          113 -TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                       .+.|+||.++|.......+..+.+..|......+++.+.++. ..+.++++|
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is  134 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT  134 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence             368999999875422222223345567776777777777654 234455554

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.0019  Score=56.85  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.++|.|+||+|.+|..++..|+++|.  +|+++|++.
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~   41 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGA   41 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCCh
Confidence            345899999999999999999999998  899999875

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.35  E-value=0.0021  Score=57.93  Aligned_cols=99  Identities=10%  Similarity=0.185  Sum_probs=59.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~--~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .+||+|||+ |.+|..++..++..+.  ..++++++.... ....++.+..   .+..   +.|+++.++++|+||++..
T Consensus         4 ~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~---~~~~~~~~~~~DiViiavp   75 (245)
T PRK07634          4 KHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVST---TTDWKQHVTSVDTIVLAMP   75 (245)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEE---eCChHHHHhcCCEEEEecC
Confidence            469999998 9999999998887753  345777776321 1122222211   1222   2356788899999999852


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~  168 (305)
                          +            ...+++++++..+-++.+|+.++.-++.
T Consensus        76 ----~------------~~~~~v~~~l~~~~~~~~vis~~~gi~~  104 (245)
T PRK07634         76 ----P------------SAHEELLAELSPLLSNQLVVTVAAGIGP  104 (245)
T ss_pred             ----H------------HHHHHHHHHHHhhccCCEEEEECCCCCH
Confidence                1            1234444445443334466656555543

>PRK12937 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.0063  Score=54.03  Aligned_cols=116  Identities=15%  Similarity=0.109  Sum_probs=66.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEec-CC---CHHHHh-----
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG-QQ---QLEDAL-----  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~~-t~---d~~~al-----  112 (305)
                      +.++|.|+||+|.+|+.++..|+..|.  ++++++.+..   .....++...  ..++..+.. -+   ++++++     
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAA--GGRAIAVQADVADAAAVTRLFDAAET   79 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999998  7887765431   1112223221  122222211 11   222333     


Q ss_pred             --CCCCEEEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          113 --TGMDIVIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       113 --~~aDiVIi~ag~~~~~g------~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                        .+.|++|.++|......      +.....+..|+.....+.+.+.+.. +.+.++++|.
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  140 (245)
T PRK12937         80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST  140 (245)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence              36899999998642111      1122345667665555555554432 4456666653

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.33  E-value=0.002  Score=59.62  Aligned_cols=98  Identities=14%  Similarity=0.153  Sum_probs=60.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~--~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .|||++||+ |.+|.+++..|+..+.  ..+|.++|++.. ....++....   .++..   .+..+++++||+||++.-
T Consensus         3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~---g~~~~---~~~~e~~~~aDvVilav~   74 (279)
T PRK07679          3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY---GVKGT---HNKKELLTDANILFLAMK   74 (279)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc---CceEe---CCHHHHHhcCCEEEEEeC
Confidence            369999998 9999999999998872  248899987531 1122232211   12221   345677899999999862


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVN  167 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~tNPvd  167 (305)
                          +            ..+.++++.+... .++.+|+.+.+-++
T Consensus        75 ----p------------~~~~~vl~~l~~~~~~~~liIs~~aGi~  103 (279)
T PRK07679         75 ----P------------KDVAEALIPFKEYIHNNQLIISLLAGVS  103 (279)
T ss_pred             ----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                1            1123333455444 35667776655554

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.33  E-value=0.005  Score=55.38  Aligned_cols=115  Identities=19%  Similarity=0.199  Sum_probs=65.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhcccCCceEEE-EecCCCHHHH-------hCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG-FLGQQQLEDA-------LTGM  115 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~~~~~~~v~~-~~~t~d~~~a-------l~~a  115 (305)
                      .+++.|+|++|.+|..++..|+.+|.  +|+++|.+...  ....++...  ...+.. .....+.+++       +...
T Consensus         6 ~~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (257)
T PRK07067          6 GKVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGPA--AIAVSLDVTRQDSIDRIVAAAVERFGGI   81 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCCc--eEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            34799999999999999999999998  99999987621  111222111  001111 0011122222       2468


Q ss_pred             CEEEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHh----CCCcEEEEecC
Q 021932          116 DIVIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISN  164 (305)
Q Consensus       116 DiVIi~ag~~~~~g------~~r~d~~~~N~~i~~~i~~~I~~~----~p~aiviv~tN  164 (305)
                      |++|.++|......      +.-.+.+..|+.....+.+.+.++    .+.+.+++++.
T Consensus        82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  140 (257)
T PRK07067         82 DILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMAS  140 (257)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            99999998642111      112334566766666666555433    33456666654

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=97.33  E-value=0.0036  Score=61.26  Aligned_cols=102  Identities=24%  Similarity=0.218  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCc-eEEE-EecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA-VVRG-FLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~-~v~~-~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +.++|.|+||+|.+|..++..|++.|.  +++++|.++... ..++.+..... .+.. .....+..+.+.+.|++|+++
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~l-~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA  253 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDKI-TLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH  253 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHH-HHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence            456899999999999999999999998  899999865211 11111111011 1111 111122345578899999999


Q ss_pred             CCCCCCCCch---hhHHHhhHHHHHHHHHH
Q 021932          123 GVPRKPGMTR---DDLFNINAGIVKTLCEG  149 (305)
Q Consensus       123 g~~~~~g~~r---~d~~~~N~~i~~~i~~~  149 (305)
                      |.......+.   .+.++.|......+.+.
T Consensus       254 Gi~~~~~~s~e~~~~~~~vNv~g~i~Li~a  283 (406)
T PRK07424        254 GINVHGERTPEAINKSYEVNTFSAWRLMEL  283 (406)
T ss_pred             CcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            8653322222   33456666544444444

>PLN02256 arogenate dehydrogenase

Probab=97.33  E-value=0.0019  Score=60.83  Aligned_cols=68  Identities=21%  Similarity=0.268  Sum_probs=47.2

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHh-CCCCEEEE
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVII  120 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi  120 (305)
                      +..+.+||+|||. |.+|..++..|...|.  +|..+|.+.....+.++   .    +..+   ++.++.+ .++|+||+
T Consensus        32 ~~~~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---g----v~~~---~~~~e~~~~~aDvVil   98 (304)
T PLN02256         32 EKSRKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---G----VSFF---RDPDDFCEEHPDVVLL   98 (304)
T ss_pred             ccCCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---C----Ceee---CCHHHHhhCCCCEEEE
Confidence            4456679999998 9999999999988886  89999987521111111   1    1111   3555555 47999999


Q ss_pred             cC
Q 021932          121 PA  122 (305)
Q Consensus       121 ~a  122 (305)
                      +.
T Consensus        99 av  100 (304)
T PLN02256         99 CT  100 (304)
T ss_pred             ec
Confidence            86

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.31  E-value=0.0059  Score=54.48  Aligned_cols=116  Identities=19%  Similarity=0.213  Sum_probs=65.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCC---HH-------HHhC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LE-------DALT  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d---~~-------~al~  113 (305)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++++++.......+....  .++..+.. -++   .+       +.+.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            346899999999999999999999998  899999765322222222211  11221111 112   11       1224


Q ss_pred             CCCEEEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHH----HhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIA----KCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g------~~r~d~~~~N~~i~~~i~~~I~----~~~p~aiviv~tN  164 (305)
                      ..|++|.++|......      ..-.+.+..|+.....+.+.+.    +....+.+++++.
T Consensus        80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS  140 (248)
T TIGR01832        80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS  140 (248)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            6899999998643211      1123345667554444444443    3332455655553

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=97.30  E-value=0.00097  Score=61.41  Aligned_cols=93  Identities=15%  Similarity=0.148  Sum_probs=62.0

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC--CCCEEEEcCCCCCC-
Q 021932           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGVPRK-  127 (305)
Q Consensus        51 IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~~~~-  127 (305)
                      |+||+|++|++++..|+..++  +++++....    ..|+.+.            .++.+.++  +.|+||.+|+.... 
T Consensus         2 ItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~~------------~~l~~~~~~~~~d~Vih~A~~~~~~   63 (306)
T PLN02725          2 VAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTRQ------------ADVEAFFAKEKPTYVILAAAKVGGI   63 (306)
T ss_pred             cccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCCH------------HHHHHHHhccCCCEEEEeeeeeccc
Confidence            899999999999999988887  555443211    1233321            12334444  57999999975321 


Q ss_pred             --CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 021932          128 --PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (305)
Q Consensus       128 --~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv  161 (305)
                        ......+.+..|......+++.+++.+..-+|..
T Consensus        64 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~   99 (306)
T PLN02725         64 HANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFL   99 (306)
T ss_pred             chhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEe
Confidence              1123456778899999999999998875444443

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.29  E-value=0.002  Score=56.10  Aligned_cols=102  Identities=20%  Similarity=0.239  Sum_probs=63.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhh---hhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT---ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~---~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      |||+||||+|.+|+.++...+.+|+  |+..+=+++.+-.+   .-+.+.+    +  +. .+.+.+++.+-|+||-+-|
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~~~~~i~q~D----i--fd-~~~~a~~l~g~DaVIsA~~   71 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAARQGVTILQKD----I--FD-LTSLASDLAGHDAVISAFG   71 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhccccccceeeccc----c--cC-hhhhHhhhcCCceEEEecc
Confidence            6999999999999999999999999  99999887621111   1011111    1  11 1234578999999999876


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      .+. ++.  ..+   -.+-...+...++... ...++|+.-
T Consensus        72 ~~~-~~~--~~~---~~k~~~~li~~l~~ag-v~RllVVGG  105 (211)
T COG2910          72 AGA-SDN--DEL---HSKSIEALIEALKGAG-VPRLLVVGG  105 (211)
T ss_pred             CCC-CCh--hHH---HHHHHHHHHHHHhhcC-CeeEEEEcC
Confidence            542 121  111   2233555556666544 344555643

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.28  E-value=0.0015  Score=60.90  Aligned_cols=66  Identities=18%  Similarity=0.243  Sum_probs=49.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +||++||- |.+|+.+|..|+..|+  ++..+|+++.+. +..+....    ...   ..+..++.+++|+||.+..
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~G----a~~---a~s~~eaa~~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAG----ATV---AASPAEAAAEADVVITMLP   66 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcC----Ccc---cCCHHHHHHhCCEEEEecC
Confidence            48999998 9999999999999999  999999976432 22233211    111   1235689999999999864

>PRK06138 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.0044  Score=55.30  Aligned_cols=36  Identities=28%  Similarity=0.278  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.+++.|+||+|.+|+.++..|++.|.  +|++++.+.
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~   39 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDA   39 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCH
Confidence            445899999999999999999999987  899999865

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.27  E-value=0.0018  Score=61.91  Aligned_cols=99  Identities=24%  Similarity=0.282  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      +...++|.|+||+|++|+.++..|....-+.+|+++++++.  ...+.++.+.    .+      .++++++.++|+||.
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~----~i------~~l~~~l~~aDiVv~  221 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG----KI------LSLEEALPEADIVVW  221 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc----cH------HhHHHHHccCCEEEE
Confidence            34557999999999999999999975432458999998652  2222222211    11      246789999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~l  169 (305)
                      +++.+...-.+..++                  .+..+++=++-|=|+-
T Consensus       222 ~ts~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd  252 (340)
T PRK14982        222 VASMPKGVEIDPETL------------------KKPCLMIDGGYPKNLD  252 (340)
T ss_pred             CCcCCcCCcCCHHHh------------------CCCeEEEEecCCCCCC
Confidence            988764211111111                  3567888889998875

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.27  E-value=0.0018  Score=60.55  Aligned_cols=64  Identities=20%  Similarity=0.302  Sum_probs=47.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +||+|||. |.+|..++..|+..|+  +|.++|+++..  ..++....    ...   ..++.++++++|+||++.
T Consensus         2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~~---~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----ATP---AASPAQAAAGAEFVITML   65 (296)
T ss_pred             CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Ccc---cCCHHHHHhcCCEEEEec
Confidence            48999998 9999999999999998  99999987522  12222211    111   235668899999999985

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=97.26  E-value=0.00041  Score=64.51  Aligned_cols=91  Identities=22%  Similarity=0.273  Sum_probs=57.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      |||.|+|++|++|+.+...|...++  +++.++..+     .|+.+...   +      ..+-+. .+.|+||.||+...
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~~---~------~~~~~~-~~pd~Vin~aa~~~   63 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPEA---V------AKLLEA-FKPDVVINCAAYTN   63 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHHH---H------HHHHHH-H--SEEEE------
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHHH---H------HHHHHH-hCCCeEeccceeec
Confidence            7999999999999999999988887  888887653     34443221   0      011122 25899999997642


Q ss_pred             CC--CCchhhHHHhhHHHHHHHHHHHHHhC
Q 021932          127 KP--GMTRDDLFNINAGIVKTLCEGIAKCC  154 (305)
Q Consensus       127 ~~--g~~r~d~~~~N~~i~~~i~~~I~~~~  154 (305)
                      ..  ..........|+.....+++.+.+.+
T Consensus        64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~   93 (286)
T PF04321_consen   64 VDACEKNPEEAYAINVDATKNLAEACKERG   93 (286)
T ss_dssp             HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT
T ss_pred             HHhhhhChhhhHHHhhHHHHHHHHHHHHcC
Confidence            11  12345566789999999999998765

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PLN02996 fatty acyl-CoA reductase

Probab=97.26  E-value=0.0048  Score=61.87  Aligned_cols=118  Identities=19%  Similarity=0.155  Sum_probs=73.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCC--chh---hhhhhccc----------------CCceEEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGV---TADISHMD----------------TNAVVRGF  102 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~--~g~---~~DL~~~~----------------~~~~v~~~  102 (305)
                      +.+.|.|+||+|++|+.++..|+.. +-+.+|+++.+...  ...   ..++.+..                ...++..+
T Consensus        10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i   89 (491)
T PLN02996         10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPV   89 (491)
T ss_pred             CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEE
Confidence            4458999999999999999887764 44568888877541  111   01111110                01334443


Q ss_pred             ecCC----------C-HHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          103 LGQQ----------Q-LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       103 ~~t~----------d-~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                      .+.-          + +++.++++|+||.+|+... ......+....|+....++++...+.. .+.++.+.|
T Consensus        90 ~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST  161 (491)
T PLN02996         90 PGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVST  161 (491)
T ss_pred             ecccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEee
Confidence            3221          1 3456689999999997643 223455677889999999999888753 444555444

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.26  E-value=0.0068  Score=54.45  Aligned_cols=115  Identities=17%  Similarity=0.179  Sum_probs=66.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHH-------h
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------L  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-------l  112 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.+.  ..++..+.. -+|   .++.       +
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999998  8999998762  2222223221  112222111 112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC---CCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~~---p~aiviv~tN  164 (305)
                      ...|++|.++|.....   ..+   -.+.+..|+.....+.+.+.++.   ..+.++++|.
T Consensus        86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss  146 (255)
T PRK07523         86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIAS  146 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEcc
Confidence            4579999999864211   111   23345567665555555555442   2345666554

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.26  E-value=0.0025  Score=59.02  Aligned_cols=68  Identities=13%  Similarity=0.152  Sum_probs=47.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~--~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      .+||++||+ |.+|.+++..|++.++  ..+|+.+|+++.  ....+.+.. .  +...   ++..+.+++||+||++.
T Consensus         2 ~~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~--~~~~l~~~~-g--~~~~---~~~~e~~~~aDiIiLav   71 (272)
T PRK12491          2 NKQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVS--NLKNASDKY-G--ITIT---TNNNEVANSADILILSI   71 (272)
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHH--HHHHHHHhc-C--cEEe---CCcHHHHhhCCEEEEEe
Confidence            358999998 9999999999998875  457999998652  122222211 1  2221   24457789999999986

>PRK06182 short chain dehydrogenase; Validated

Probab=97.24  E-value=0.0037  Score=56.95  Aligned_cols=112  Identities=14%  Similarity=0.073  Sum_probs=64.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhC-------CCCE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALT-------GMDI  117 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~-------~aDi  117 (305)
                      .++|.|+|++|.+|..++..|+..|.  +|++.++++...  .++.... ...+.. +....++++.++       +.|+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~l--~~~~~~~-~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~   77 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDKM--EDLASLG-VHPLSLDVTDEASIKAAVDTIIAEEGRIDV   77 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHhCC-CeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            35899999999999999999999998  899998865211  1121111 011111 111112223333       7899


Q ss_pred             EEEcCCCCCCC---C---CchhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932          118 VIIPAGVPRKP---G---MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       118 VIi~ag~~~~~---g---~~r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +|.++|.....   .   +.....+..|...    ++.+.+.+++.... .+++++
T Consensus        78 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g-~iv~is  132 (273)
T PRK06182         78 LVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSG-RIINIS  132 (273)
T ss_pred             EEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence            99999864221   1   1123345556543    56666677665543 444444

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.24  E-value=0.0019  Score=64.31  Aligned_cols=96  Identities=18%  Similarity=0.224  Sum_probs=63.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccC--CceEEEEecCCCHHHHhC---CCCEEEEc
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALT---GMDIVIIP  121 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~---~aDiVIi~  121 (305)
                      .+|+|||. |.+|+++|..|+.+|+  +|.++|+++..  +.++.....  ...+..   ..++++.++   ++|+||++
T Consensus         2 ~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil~   73 (470)
T PTZ00142          2 SDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEK--TEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVILL   73 (470)
T ss_pred             CEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEEE
Confidence            48999998 9999999999999999  99999997622  122222100  111222   346666665   58988887


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNP  165 (305)
                      .-               +-+.++++++.+..+- |+.+||..+|=
T Consensus        74 v~---------------~~~~v~~vi~~l~~~L~~g~iIID~gn~  103 (470)
T PTZ00142         74 IK---------------AGEAVDETIDNLLPLLEKGDIIIDGGNE  103 (470)
T ss_pred             eC---------------ChHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence            42               2244555556665554 67788887763

>PRK07985 oxidoreductase; Provisional

Probab=97.24  E-value=0.0051  Score=57.10  Aligned_cols=115  Identities=19%  Similarity=0.118  Sum_probs=64.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--ch-hhhhhhcccCCceEEEEe-cCCCH----------HHHh
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG-VTADISHMDTNAVVRGFL-GQQQL----------EDAL  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g-~~~DL~~~~~~~~v~~~~-~t~d~----------~~al  112 (305)
                      +++.|+||+|.+|..++..|+..|.  +|++.+.+..  .. ...++.... ...+..+. .-+|.          .+.+
T Consensus        50 k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  126 (294)
T PRK07985         50 RKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEEC-GRKAVLLPGDLSDEKFARSLVHEAHKAL  126 (294)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHc-CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999999998  8888876431  11 111111111 11222111 11221          1223


Q ss_pred             CCCCEEEEcCCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                      ...|++|.++|....  +  ..+.   .+.+..|+.....+.+.+.+.- ..+.|+++|.
T Consensus       127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS  186 (294)
T PRK07985        127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSS  186 (294)
T ss_pred             CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECC
Confidence            467999999985321  1  1122   3345667765555555554432 3456666654

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.24  E-value=0.002  Score=59.51  Aligned_cols=66  Identities=21%  Similarity=0.356  Sum_probs=44.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |||+|||. |.+|..++..|...|+..+|+.+|+++..  ..++.....   ...   ..++.+ +.++|+||++.
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~---~~~~~~-~~~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDE---IVSFEE-LKKCDVIFLAI   66 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Ccc---cCCHHH-HhcCCEEEEeC
Confidence            48999998 99999999999988875588999986521  111111110   111   124445 45699999986

>PLN02712 arogenate dehydrogenase

Probab=97.24  E-value=0.0024  Score=66.27  Aligned_cols=93  Identities=13%  Similarity=0.139  Sum_probs=59.8

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHh-CCCCEEEE
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVII  120 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi  120 (305)
                      ++.+++||+|||. |.+|..++..|...|+  +|..+|.+.....+.++   .    +..+   +++++.+ +++|+||+
T Consensus        48 ~~~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~---G----v~~~---~d~~e~~~~~aDvViL  114 (667)
T PLN02712         48 DNTTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL---G----VSFF---LDPHDLCERHPDVILL  114 (667)
T ss_pred             ccCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc---C----CEEe---CCHHHHhhcCCCEEEE
Confidence            5666789999998 9999999999998887  89999986421111111   1    1211   3455544 57999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHH-Hh-CCCcEEEEec
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIA-KC-CPKAIVNLIS  163 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~-~~-~p~aiviv~t  163 (305)
                      +..                ...+.++++.+. .+ .|+++|+-++
T Consensus       115 avP----------------~~~~~~vl~~l~~~~l~~g~iVvDv~  143 (667)
T PLN02712        115 CTS----------------IISTENVLKSLPLQRLKRNTLFVDVL  143 (667)
T ss_pred             cCC----------------HHHHHHHHHhhhhhcCCCCeEEEECC
Confidence            852                123444444443 22 3567776664

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=97.24  E-value=0.021  Score=54.08  Aligned_cols=67  Identities=18%  Similarity=0.191  Sum_probs=46.2

Q ss_pred             CEEEEEcCCCc--------------------hHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEe
Q 021932           47 FKVAVLGAAGG--------------------IGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL  103 (305)
Q Consensus        47 ~KI~IIGaaG~--------------------VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~  103 (305)
                      |||+|-|| |+                    =|+.+|..|+..|+  +|.++|++..   ......+.+..    ...  
T Consensus         1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaG----A~~--   71 (341)
T TIGR01724         1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAG----VKV--   71 (341)
T ss_pred             CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCC----Cee--
Confidence            57888887 64                    37899999999999  9999998752   12223344322    111  


Q ss_pred             cCCCHHHHhCCCCEEEEcCC
Q 021932          104 GQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus       104 ~t~d~~~al~~aDiVIi~ag  123 (305)
                       ..+..++.+++|+||++..
T Consensus        72 -AaS~aEAAa~ADVVIL~LP   90 (341)
T TIGR01724        72 -VSDDKEAAKHGEIHVLFTP   90 (341)
T ss_pred             -cCCHHHHHhCCCEEEEecC
Confidence             2346789999999999853

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=97.24  E-value=0.0087  Score=53.03  Aligned_cols=114  Identities=22%  Similarity=0.319  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---HHH-------H
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LED-------A  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~-------a  111 (305)
                      +.+++.|+||+|.+|..++..|+++|.  .|.+.+.+.  +.....++.     ..+..+. .-++   +++       .
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEAD   77 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  788887754  111111111     1111111 0112   111       1


Q ss_pred             hCCCCEEEEcCCCCCCC---C---CchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 021932          112 LTGMDIVIIPAGVPRKP---G---MTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP  165 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~---g---~~r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tNP  165 (305)
                      +...|+||.++|.....   .   .+-.+.+..|+.....+++.+.+.   .+.+.+++++..
T Consensus        78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  140 (245)
T PRK12936         78 LEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSV  140 (245)
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCH
Confidence            34689999999864321   1   112334566666555555544322   234556666543

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.23  E-value=0.0057  Score=55.09  Aligned_cols=116  Identities=16%  Similarity=0.127  Sum_probs=68.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCCHHHHh--------
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQLEDAL--------  112 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d~~~al--------  112 (305)
                      .+.++|.|+||+|.+|+.++..|+..|.  +|+++|.+..  .....++...  ..++..+.. -+|. +.+        
T Consensus        10 ~~~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~Dl~d~-~~i~~~~~~~~   84 (259)
T PRK08213         10 LSGKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEAL--GIDALWIAADVADE-ADIERLAEETL   84 (259)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEccCCCH-HHHHHHHHHHH
Confidence            3446899999999999999999999998  8999998642  1111222211  112222111 1222 222        


Q ss_pred             ---CCCCEEEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHh----CCCcEEEEecC
Q 021932          113 ---TGMDIVIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISN  164 (305)
Q Consensus       113 ---~~aDiVIi~ag~~~~~g------~~r~d~~~~N~~i~~~i~~~I~~~----~p~aiviv~tN  164 (305)
                         ...|+||.++|......      ....+.+..|+.....+.+.+.++    .+.+.++++|.
T Consensus        85 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS  149 (259)
T PRK08213         85 ERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS  149 (259)
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence               46899999998632111      112345667877777777766554    23445655554

>PRK08278 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.014  Score=53.29  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.+++.|+||+|.+|..++..|++.|.  +|++++++.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTA   40 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeccc
Confidence            345899999999999999999999997  999999864

>PRK05717 oxidoreductase; Validated

Probab=97.23  E-value=0.0044  Score=55.76  Aligned_cols=114  Identities=15%  Similarity=0.142  Sum_probs=66.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCCH---HHH-------hCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQL---EDA-------LTG  114 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d~---~~a-------l~~  114 (305)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|+++....  ++.+.. ...+..+.. -++.   +++       +..
T Consensus        10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~--~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   84 (255)
T PRK05717         10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGS--KVAKAL-GENAWFIAMDVADEAQVAAGVAEVLGQFGR   84 (255)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHH--HHHHHc-CCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35899999999999999999999987  9999998652111  111100 011111110 1121   111       235


Q ss_pred             CCEEEEcCCCCCCCC-----Cc---hhhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecC
Q 021932          115 MDIVIIPAGVPRKPG-----MT---RDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISN  164 (305)
Q Consensus       115 aDiVIi~ag~~~~~g-----~~---r~d~~~~N~~i~~~i~~~I~~~--~p~aiviv~tN  164 (305)
                      .|++|.++|......     .+   -.+.+..|+.....+.+.+.++  ...+.++++|.
T Consensus        85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS  144 (255)
T PRK05717         85 LDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLAS  144 (255)
T ss_pred             CCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcc
Confidence            799999998653211     11   2345677877777777776543  22355666653

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.22  E-value=0.0033  Score=58.26  Aligned_cols=99  Identities=17%  Similarity=0.130  Sum_probs=63.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~--~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      +||+|||+ |.+|..++..|...+.  ..+|+++|.+... ....+...  ...+..   +.+..+.++++|+||++.. 
T Consensus         2 ~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~--~~~~~~---~~~~~e~~~~aDvVilavp-   73 (277)
T PRK06928          2 EKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDK--YPTVEL---ADNEAEIFTKCDHSFICVP-   73 (277)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHH--cCCeEE---eCCHHHHHhhCCEEEEecC-
Confidence            58999998 9999999999988772  2489999875411 11222211  111222   2355677899999999863 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~  168 (305)
                                     ...++++++.+..+- ++..|+.+.|-++.
T Consensus        74 ---------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~  103 (277)
T PRK06928         74 ---------------PLAVLPLLKDCAPVLTPDRHVVSIAAGVSL  103 (277)
T ss_pred             ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence                           123556666666544 45667666776654

>PRK07069 short chain dehydrogenase; Validated

Probab=97.22  E-value=0.0068  Score=53.99  Aligned_cols=114  Identities=22%  Similarity=0.276  Sum_probs=66.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-C--CchhhhhhhcccCCceEEEEe-cCCCH---H-------HHhC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTNAVVRGFL-GQQQL---E-------DALT  113 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~-~--~~g~~~DL~~~~~~~~v~~~~-~t~d~---~-------~al~  113 (305)
                      ||.|+||+|.+|..++..|+..|.  +|+++|++ .  +.....++........+..+. .-+|.   +       +.+.
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG   78 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            488999999999999999999997  89999986 3  122222232211001111110 11121   1       2235


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..|++|.++|......   .+   ....+..|+.    ..+.+.+.+.+.... .++++|.
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~ii~~ss  138 (251)
T PRK07069         79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPA-SIVNISS  138 (251)
T ss_pred             CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCc-EEEEecC
Confidence            6899999998643211   11   2334556766    777788888766544 4444543

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.21  E-value=0.014  Score=52.95  Aligned_cols=117  Identities=15%  Similarity=0.103  Sum_probs=65.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHhC------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT------  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~------  113 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|++++.+.  ......++.......++..+.. -.|   .++.++      
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH   84 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999998  899999865  2222222321110112222211 112   222222      


Q ss_pred             -CCCEEEEcCCCCCCCC----Cch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          114 -GMDIVIIPAGVPRKPG----MTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       114 -~aDiVIi~ag~~~~~g----~~r---~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                       ..|++|.++|.....+    .+.   .+.+..|......+.+.+.+.   ...+.++++|.
T Consensus        85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS  146 (276)
T PRK05875         85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISS  146 (276)
T ss_pred             CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence             6899999998532211    121   233455666555555544333   22345555543

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.20  E-value=0.004  Score=55.08  Aligned_cols=35  Identities=29%  Similarity=0.391  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~   81 (305)
                      +..||+|+|+ |.+|+.++..|+..|+ .+|+|+|.+
T Consensus        20 ~~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGL-GGLGSNVAINLARAGI-GKLILVDFD   54 (200)
T ss_pred             hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            3458999999 9999999999999997 489999998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=97.20  E-value=0.0041  Score=55.39  Aligned_cols=102  Identities=19%  Similarity=0.249  Sum_probs=59.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecC-CC---HHHHh-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQ-QQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t-~d---~~~al-------  112 (305)
                      .++|.|+||+|++|+.++..|+..|.  +|+++|.+..  .....++....  .++..+... .|   .++.+       
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  8999998752  22222333211  122221111 12   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHH
Q 021932          113 TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIA  151 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~I~  151 (305)
                      ...|++|.++|......   .+.   ...+..|+.....+.+.+.
T Consensus        79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~  123 (250)
T TIGR03206        79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVL  123 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence            35899999998532211   112   2345667666665555544

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.20  E-value=0.005  Score=56.15  Aligned_cols=34  Identities=15%  Similarity=0.059  Sum_probs=30.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.+.|+||+|.+|..++..|+.+|.  +|++++++.
T Consensus         4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~   37 (280)
T PRK06914          4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNP   37 (280)
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCH
Confidence            4689999999999999999999998  899998765

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.20  E-value=0.0021  Score=61.20  Aligned_cols=91  Identities=16%  Similarity=0.207  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ..++|+|||. |.+|+.+|..|...|.  +|+.+|++...  ..+.        +..   ..++++++++||+|+++...
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~--~~~~--------~~~---~~~l~ell~~aDiVil~lP~  208 (330)
T PRK12480        145 KNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNK--DLDF--------LTY---KDSVKEAIKDADIISLHVPA  208 (330)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhH--hhhh--------hhc---cCCHHHHHhcCCEEEEeCCC
Confidence            4458999999 9999999999988887  99999986421  0000        111   23577899999999998632


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      .  +         .+..++.  .+.+....|++++|+++-
T Consensus       209 t--~---------~t~~li~--~~~l~~mk~gavlIN~aR  235 (330)
T PRK12480        209 N--K---------ESYHLFD--KAMFDHVKKGAILVNAAR  235 (330)
T ss_pred             c--H---------HHHHHHh--HHHHhcCCCCcEEEEcCC
Confidence            1  1         1112221  122333347889998873

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0077  Score=53.97  Aligned_cols=117  Identities=15%  Similarity=0.128  Sum_probs=67.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---H-------H
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---E-------D  110 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~-------~  110 (305)
                      .+.++|.|+||+|.+|..++..|+.+|.  +|+++|+++.  .....++....  .++..+. .-+|.   +       +
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   78 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALE   78 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999998  9999998762  22222332211  1122111 11121   1       1


Q ss_pred             HhCCCCEEEEcCCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 021932          111 ALTGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (305)
Q Consensus       111 al~~aDiVIi~ag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~I~~~~--p~aiviv~tN  164 (305)
                      .+...|+||.++|....  +  ..+.   .+.+..|+.....+.+.+.++-  ..+.++++|.
T Consensus        79 ~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS  141 (258)
T PRK07890         79 RFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS  141 (258)
T ss_pred             HcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            22468999999986422  1  1122   3345566665566666655431  1235555553

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.015  Score=53.21  Aligned_cols=113  Identities=12%  Similarity=0.093  Sum_probs=64.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe-cCCC---HHHHh-------CC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------TG  114 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al-------~~  114 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|++++++....  .++.... ..++..+. .-+|   ..+.+       ..
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~--~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAAR--ADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHH--HHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35799999999999999999999998  899999865211  1121111 11121111 0112   11222       35


Q ss_pred             CCEEEEcCCCCCC---CCCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEec
Q 021932          115 MDIVIIPAGVPRK---PGMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLIS  163 (305)
Q Consensus       115 aDiVIi~ag~~~~---~g~~r---~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~t  163 (305)
                      .|+||.++|....   ...+.   .+.+..|+.....+.+.+.++   ...+.++++|
T Consensus        79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iS  136 (277)
T PRK06180         79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNIT  136 (277)
T ss_pred             CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence            8999999986421   11122   234667776666666654332   1234455555

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.17  E-value=0.002  Score=59.98  Aligned_cols=73  Identities=22%  Similarity=0.291  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +..||+|+|+ |.+|.++++.|...|. .+|.++|++.  +++.+.++.+..  +..... ...+.++.++++|+||.+.
T Consensus       126 ~~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~--~~~~~~-~~~~~~~~~~~aDiVInaT  200 (284)
T PRK12549        126 SLERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARF--PAARAT-AGSDLAAALAAADGLVHAT  200 (284)
T ss_pred             cCCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhC--CCeEEE-eccchHhhhCCCCEEEECC
Confidence            3469999999 9999999999998885 5899999976  344444554432  222221 1234456789999999984

>PRK06197 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.0061  Score=56.64  Aligned_cols=117  Identities=22%  Similarity=0.117  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch--hhhhhhcccCCceEEEEec-CCCH---HHH------
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLG-QQQL---EDA------  111 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g--~~~DL~~~~~~~~v~~~~~-t~d~---~~a------  111 (305)
                      .+.++|.|+||+|.+|..++..|+..|.  +|++++++...+  ...++........+..+.. -.|.   ++.      
T Consensus        14 ~~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   91 (306)
T PRK06197         14 QSGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA   91 (306)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence            3446899999999999999999999998  899998865211  1223321111122222211 1122   111      


Q ss_pred             -hCCCCEEEEcCCCCCCCC----CchhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932          112 -LTGMDIVIIPAGVPRKPG----MTRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       112 -l~~aDiVIi~ag~~~~~g----~~r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t  163 (305)
                       +...|++|.+||....+.    ..-...+..|...    .+.+.+.+.+.. .+.|+++|
T Consensus        92 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vS  151 (306)
T PRK06197         92 AYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVS  151 (306)
T ss_pred             hCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEEC
Confidence             236899999998632211    1112335556554    666676666543 34555554

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.0089  Score=53.31  Aligned_cols=114  Identities=18%  Similarity=0.161  Sum_probs=64.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEE-ecCCCHH---H-------Hh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF-LGQQQLE---D-------AL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~-~~t~d~~---~-------al  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.+..  ..+..+ ..-+|.+   +       .+
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAF   81 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999987  8999998752  12222222211  111111 1112221   1       22


Q ss_pred             CCCCEEEEcCCCCCC----C--CCch---hhHHHhhHHHHHHHHHHHHHhC---CCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRK----P--GMTR---DDLFNINAGIVKTLCEGIAKCC---PKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~----~--g~~r---~d~~~~N~~i~~~i~~~I~~~~---p~aiviv~t  163 (305)
                      ...|+||.++|....    +  ..+.   .+.+..|+.....+.+.+.++.   ..+.++++|
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s  144 (250)
T PRK07774         82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQS  144 (250)
T ss_pred             CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEe
Confidence            468999999986421    1  1111   2345566665555555555432   234555554

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.17  E-value=0.00087  Score=60.14  Aligned_cols=157  Identities=17%  Similarity=0.253  Sum_probs=93.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC------Cchhhh---hhhccc-CCc------eEEEEecCCCHHH
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGVTA---DISHMD-TNA------VVRGFLGQQQLED  110 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~------~~g~~~---DL~~~~-~~~------~v~~~~~t~d~~~  110 (305)
                      .||+|+|. |.+|+..|.+++..|+  +|.|||+.+      +.....   +|+... ...      .+..+++++++.|
T Consensus         4 ~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E   80 (313)
T KOG2305|consen    4 GKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE   80 (313)
T ss_pred             cceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence            48999997 9999999999999999  999999976      122222   333221 111      1222456788999


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC------CC
Q 021932          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG------TY  183 (305)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s------~~  183 (305)
                      ..++|=.|=.|+              .+.+...+++.+++.+.. |..|+  .|.....|....+.=+.+.-      -.
T Consensus        81 ~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~tIl--aSSTSt~mpS~~s~gL~~k~q~lvaHPv  144 (313)
T KOG2305|consen   81 LVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTTIL--ASSTSTFMPSKFSAGLINKEQCLVAHPV  144 (313)
T ss_pred             HHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCceEE--eccccccChHHHhhhhhhhhheeEecCC
Confidence            999885555553              335677888888998887 55443  66666666544332221100      00


Q ss_pred             CCCcEEEe--------eehhhHHHHHHHHHHhCCCCcceeEEEEccc
Q 021932          184 DPKRLLGV--------TMLDVVRANTFVAEVLGLDPREVDVPVVGGH  222 (305)
Q Consensus       184 p~~kviG~--------t~Lds~R~~~~la~~l~v~~~~V~~~vlG~h  222 (305)
                      +|--+|-+        |.-|+..=.+.|-+.+|-.|-...-.+.|.-
T Consensus       145 NPPyfiPLvElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~  191 (313)
T KOG2305|consen  145 NPPYFIPLVELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFA  191 (313)
T ss_pred             CCCcccchheeccCCCCChhHHHHHHHHHHHhCCCCcccccccccce
Confidence            11112222        3334432233455777877766666666644

>PRK09135 pteridine reductase; Provisional

Probab=97.17  E-value=0.0043  Score=55.05  Aligned_cols=104  Identities=16%  Similarity=0.154  Sum_probs=61.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEe-cCCC---HHHHh-------
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al-------  112 (305)
                      ++|.|+||+|++|++++..|+..|.  +|+++|...   ......++.+.. ...+..+. .-+|   ..+++       
T Consensus         7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   83 (249)
T PRK09135          7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALR-PGSAAALQADLLDPDALPELVAACVAAF   83 (249)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhc-CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999998  999999753   122222333221 11122111 1122   22222       


Q ss_pred             CCCCEEEEcCCCCCC--CC----CchhhHHHhhHHHHHHHHHHHHHh
Q 021932          113 TGMDIVIIPAGVPRK--PG----MTRDDLFNINAGIVKTLCEGIAKC  153 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~--~g----~~r~d~~~~N~~i~~~i~~~I~~~  153 (305)
                      .+.|+||.++|....  ..    .+..+.+..|+.....+.+.+.++
T Consensus        84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~  130 (249)
T PRK09135         84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQ  130 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHH
Confidence            357999999985321  11    112445667777666666666543

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=97.17  E-value=0.0074  Score=53.95  Aligned_cols=117  Identities=19%  Similarity=0.206  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEE--ecC-C----------CHH
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF--LGQ-Q----------QLE  109 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~--~~t-~----------d~~  109 (305)
                      +.++|.|+|++|++|..++..|+..|.  +|+++|++.  ......++.+.. ..++..+  ..+ .          .+.
T Consensus        11 ~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945         11 KDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAG-GPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEecccCCCHHHHHHHHHHHH
Confidence            446899999999999999999999887  999999875  222233444322 1112111  100 0          122


Q ss_pred             HHhCCCCEEEEcCCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHH---hCCCcEEEEecC
Q 021932          110 DALTGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLCEGIAK---CCPKAIVNLISN  164 (305)
Q Consensus       110 ~al~~aDiVIi~ag~~~~--~--g~~r---~d~~~~N~~i~~~i~~~I~~---~~p~aiviv~tN  164 (305)
                      +.+...|+||.++|....  +  ..+.   ...+..|+.....+.+.+.+   ..+.+.++++|.
T Consensus        88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss  152 (247)
T PRK08945         88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSS  152 (247)
T ss_pred             HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence            334568999999986322  1  1122   23455666654444444332   123445555554

>PLN00016 RNA-binding protein; Provisional

Probab=97.15  E-value=0.0041  Score=59.83  Aligned_cols=99  Identities=19%  Similarity=0.203  Sum_probs=61.4

Q ss_pred             CCCCCCEEEEE----cCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhh---------hhhcccCCceEEEEec-CCC
Q 021932           42 GGSPGFKVAVL----GAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---------DISHMDTNAVVRGFLG-QQQ  107 (305)
Q Consensus        42 ~~~~~~KI~II----GaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~---------DL~~~~~~~~v~~~~~-t~d  107 (305)
                      ...+++||.|+    ||+|++|+.++..|+..|+  +|++++++......+         ++..    ..++.+.+ -.|
T Consensus        48 ~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~l~~----~~v~~v~~D~~d  121 (378)
T PLN00016         48 AAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGKEPSQKMKKEPFSRFSELSS----AGVKTVWGDPAD  121 (378)
T ss_pred             cccccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCCcchhhhccCchhhhhHhhh----cCceEEEecHHH
Confidence            33445799999    9999999999999999998  999999875211100         1111    11222221 123


Q ss_pred             HHHHh--CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932          108 LEDAL--TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN  160 (305)
Q Consensus       108 ~~~al--~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aivi  160 (305)
                      +++.+  .++|+||.+++.              +....+.+++.+++.+.+-+|.
T Consensus       122 ~~~~~~~~~~d~Vi~~~~~--------------~~~~~~~ll~aa~~~gvkr~V~  162 (378)
T PLN00016        122 VKSKVAGAGFDVVYDNNGK--------------DLDEVEPVADWAKSPGLKQFLF  162 (378)
T ss_pred             HHhhhccCCccEEEeCCCC--------------CHHHHHHHHHHHHHcCCCEEEE
Confidence            33444  579999988642              1234566777777666554443

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=97.15  E-value=0.0047  Score=54.86  Aligned_cols=113  Identities=20%  Similarity=0.267  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------  112 (305)
                      .++|.|+||+|.+|..++..|+.+|.  +|++++++..  .....++...  ...+..+.. -.|   +++.+       
T Consensus         6 ~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (251)
T PRK12826          6 GRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAA--GGKARARQVDVRDRAALKAAVAAGVEDF   81 (251)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  8999998741  2222223221  112322211 112   22222       


Q ss_pred             CCCCEEEEcCCCCCC-C--CCch---hhHHHhhHHHHHHHHHHH----HHhCCCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLCEGI----AKCCPKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~-~--g~~r---~d~~~~N~~i~~~i~~~I----~~~~p~aiviv~t  163 (305)
                      ...|+||.++|.... +  ..+.   .+.+..|+.....+.+.+    .+..+ ..++++|
T Consensus        82 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~~s  141 (251)
T PRK12826         82 GRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGG-GRIVLTS  141 (251)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEEe
Confidence            368999999976431 1  1222   234556666555555544    44443 3444444

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0098  Score=52.87  Aligned_cols=115  Identities=16%  Similarity=0.206  Sum_probs=65.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---HHH-------h
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---EDA-------L  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~~a-------l  112 (305)
                      .++|.|+||+|.+|+.++..|++.|.  +|++++.++.  .....++....  .++..+. .-+|.   ++.       +
T Consensus         7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            36899999999999999999999998  8999987652  22223333221  1222211 11221   111       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                      .+.|+||.++|.....   ..+.   ...+..|......+.+.+.++   ...+.++++|.
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS  143 (250)
T PRK12939         83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS  143 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence            5789999999864321   1111   223455666555555554433   12445655554

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.14  E-value=0.0037  Score=55.24  Aligned_cols=35  Identities=29%  Similarity=0.481  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .++|.|+||+|.+|..++..|+++|+  +|.++++++
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~   39 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNE   39 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            46899999999999999999999998  799999876

>PRK06924 short chain dehydrogenase; Provisional

Probab=97.13  E-value=0.0058  Score=54.65  Aligned_cols=34  Identities=15%  Similarity=0.158  Sum_probs=30.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ++|.|+||+|.+|+.++..|+++|.  +|+++++++
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            4799999999999999999999998  899999865

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.0046  Score=55.44  Aligned_cols=35  Identities=26%  Similarity=0.272  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++
T Consensus         7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~   41 (253)
T PRK06172          7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDA   41 (253)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            35899999999999999999999887  899999875

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.12  E-value=0.0039  Score=57.22  Aligned_cols=90  Identities=17%  Similarity=0.226  Sum_probs=58.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~--~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .|||+|||+ |.+|++++..|...+..  .+++.+|.++..     +       ....   ..+..+.++++|+||++. 
T Consensus         3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav-   65 (260)
T PTZ00431          3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV-   65 (260)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe-
Confidence            369999998 99999999999987743  358888875421     0       0111   124457788999999984 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                         +|            ..+.++++++..+-++..++...+-++
T Consensus        66 ---kp------------~~~~~vl~~i~~~l~~~~iIS~~aGi~   94 (260)
T PTZ00431         66 ---KP------------DLAGKVLLEIKPYLGSKLLISICGGLN   94 (260)
T ss_pred             ---CH------------HHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence               11            334555555554433345555566555

>PRK08818 prephenate dehydrogenase; Provisional

Probab=97.12  E-value=0.0036  Score=60.54  Aligned_cols=56  Identities=23%  Similarity=0.263  Sum_probs=43.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .+||+|||.+|.+|..++..|.+. ++  +|+.+|.+          +..          ..+.++.+++||+||++..
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~--~V~g~D~~----------d~~----------~~~~~~~v~~aDlVilavP   60 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQL--EVIGHDPA----------DPG----------SLDPATLLQRADVLIFSAP   60 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCC--EEEEEcCC----------ccc----------cCCHHHHhcCCCEEEEeCC
Confidence            358999998899999999999875 44  89999873          110          1245678999999999963

>PRK07856 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.008  Score=53.96  Aligned_cols=110  Identities=13%  Similarity=0.091  Sum_probs=64.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec----CCCHHHHh-------C
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDAL-------T  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al-------~  113 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++...    ...    ...+..+..    ..+.++.+       .
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~----~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   74 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE----TVD----GRPAEFHAADVRDPDQVAALVDAIVERHG   74 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh----hhc----CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            446899999999999999999999998  89999986521    000    011111100    01222223       3


Q ss_pred             CCCEEEEcCCCCCCCC---C---chhhHHHhhHHHHHHHHHHHHH----hCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIAK----CCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~---~r~d~~~~N~~i~~~i~~~I~~----~~p~aiviv~tN  164 (305)
                      ..|++|.++|......   .   .....+..|+.....+.+.+.+    ....+.++++|.
T Consensus        75 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS  135 (252)
T PRK07856         75 RLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGS  135 (252)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence            5699999998532111   1   1234456666655555555443    223355666654

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.0066  Score=55.16  Aligned_cols=118  Identities=18%  Similarity=0.187  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---HHHH-------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a-------  111 (305)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|++.  ......++....  .++..+. .-++   .++.       
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~   83 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADE   83 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  899999865  222222332211  1111111 0112   2222       


Q ss_pred             hCCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecCCC
Q 021932          112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPV  166 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~I~~~--~p~aiviv~tNPv  166 (305)
                      +...|++|.++|.....   ..+.   ...+..|......+.+...+.  .+++.|+++|.+.
T Consensus        84 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~  146 (264)
T PRK07576         84 FGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ  146 (264)
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence            23579999998753211   1122   233455665555555544432  1346677766543

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.0073  Score=54.73  Aligned_cols=115  Identities=17%  Similarity=0.160  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCHH---HH-------h
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQLE---DA-------L  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~~---~a-------l  112 (305)
                      .+++.|+||+|.+|.+++..|+.+|.  +|+++|++..  .....++...  ...+..+. .-++.+   ++       +
T Consensus        10 ~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (263)
T PRK07814         10 DQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAA--GRRAHVVAADLAHPEATAGLAGQAVEAF   85 (263)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  9999998752  2222233221  11222211 112221   11       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHH----HhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIA----KCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~----~~~p~aiviv~tN  164 (305)
                      ...|+||.+||.....   ..+   ..+.+..|......+.+...    +....+.+++++.
T Consensus        86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS  147 (263)
T PRK07814         86 GRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS  147 (263)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence            3789999999853221   111   23345556555555555443    3344455666654

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.11  E-value=0.0058  Score=54.13  Aligned_cols=104  Identities=22%  Similarity=0.272  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-----
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~-D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-----  112 (305)
                      +.++|.|+||+|.+|..++..|++.|.  +++++ +.+..  .....++...  ...+..... -+|   +.+.+     
T Consensus         4 ~~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T PRK05565          4 MGKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVE   79 (247)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999998887  78887 87651  1111122221  122222211 112   21222     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHH
Q 021932          113 --TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAK  152 (305)
Q Consensus       113 --~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~  152 (305)
                        ...|+||.++|.....   ..+   -.+.+..|......+.+.+..
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~  127 (247)
T PRK05565         80 KFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALP  127 (247)
T ss_pred             HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence              2789999999864211   111   123455676654445444443

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.11  E-value=0.0027  Score=52.43  Aligned_cols=78  Identities=21%  Similarity=0.247  Sum_probs=53.4

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +.+..||.|+|| |-+|..+++.|...|. .+|.+++++..  .+.+|........+.... ..++.+.+.++|+||.+.
T Consensus         9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~--ra~~l~~~~~~~~~~~~~-~~~~~~~~~~~DivI~aT   83 (135)
T PF01488_consen    9 DLKGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPE--RAEALAEEFGGVNIEAIP-LEDLEEALQEADIVINAT   83 (135)
T ss_dssp             TGTTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHH--HHHHHHHHHTGCSEEEEE-GGGHCHHHHTESEEEE-S
T ss_pred             CcCCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHH--HHHHHHHHcCccccceee-HHHHHHHHhhCCeEEEec
Confidence            445679999999 9999999999999976 47999998652  222333221122344332 245667889999999987


Q ss_pred             CCC
Q 021932          123 GVP  125 (305)
Q Consensus       123 g~~  125 (305)
                      +.+
T Consensus        84 ~~~   86 (135)
T PF01488_consen   84 PSG   86 (135)
T ss_dssp             STT
T ss_pred             CCC
Confidence            655

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.0056  Score=55.50  Aligned_cols=34  Identities=21%  Similarity=0.094  Sum_probs=31.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ++|.|+||+|.+|..++..|+..|.  +|++.+++.
T Consensus         5 ~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~   38 (270)
T PRK06179          5 KVALVTGASSGIGRATAEKLARAGY--RVFGTSRNP   38 (270)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            4799999999999999999999997  899999865

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.10  E-value=0.01  Score=52.42  Aligned_cols=101  Identities=20%  Similarity=0.288  Sum_probs=56.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc---hhhhhhhcccCCceEEEEec-CCC---HHHH-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVRGFLG-QQQ---LEDA-------  111 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~---g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-------  111 (305)
                      +++|.|+||+|.+|+.++..|++.|+  ++++.......   ....++...  ..++..+.. -.|   +.+.       
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSDEEAAEELVEAVEAL--GRRAQAVQADVTDKAALEAAVAAAVER   81 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCcCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999998  76665543311   111122211  122222211 111   2222       


Q ss_pred             hCCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHH
Q 021932          112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGI  150 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~I  150 (305)
                      +.+.|+||.++|.....   ..+.   .+.+..|+.....+.+.+
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  126 (249)
T PRK12825         82 FGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAV  126 (249)
T ss_pred             cCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHH
Confidence            24679999999854221   1122   334555666555555554

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.0034  Score=56.63  Aligned_cols=35  Identities=34%  Similarity=0.341  Sum_probs=31.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +++|.|+||+|.+|..++..|++.|.  +|+++|++.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~   36 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRT   36 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999988  899999865

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.10  E-value=0.0054  Score=55.03  Aligned_cols=34  Identities=18%  Similarity=0.126  Sum_probs=31.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      |+|.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~   34 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQ   34 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence            5899999999999999999999998  899999865

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.10  E-value=0.009  Score=53.92  Aligned_cols=34  Identities=18%  Similarity=0.142  Sum_probs=31.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      |+|.|+||+|.+|..++..|+..|.  +|++.|+++
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~   34 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNE   34 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            5899999999999999999999998  899999875

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.018  Score=52.26  Aligned_cols=100  Identities=16%  Similarity=0.218  Sum_probs=59.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      +++.|+||+|.+|..++..|+..|.  +|+++|.++....... .+.. ...+.. .....+.++.+...|++|.+||..
T Consensus        15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~-~~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~   90 (245)
T PRK12367         15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESN-DESP-NEWIKWECGKEESLDKQLASLDVLILNHGIN   90 (245)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhh-ccCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence            4899999999999999999999998  8999998652111110 1111 111111 111123345667899999999864


Q ss_pred             CCCCCc---hhhHHHhhHHHHHHHHHHH
Q 021932          126 RKPGMT---RDDLFNINAGIVKTLCEGI  150 (305)
Q Consensus       126 ~~~g~~---r~d~~~~N~~i~~~i~~~I  150 (305)
                      .....+   ..+.+..|+.....+++.+
T Consensus        91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~~  118 (245)
T PRK12367         91 PGGRQDPENINKALEINALSSWRLLELF  118 (245)
T ss_pred             CcCCCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            322222   2344566765444444443

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.0052  Score=55.94  Aligned_cols=99  Identities=12%  Similarity=-0.009  Sum_probs=59.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCCH---HH-------HhCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQL---ED-------ALTGM  115 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d~---~~-------al~~a  115 (305)
                      ++|.|+||+|++|+.++..|+..|.  .|++++.++..  ..++.... ...+..+.. -+|.   ++       .+.+.
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDA--LDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI   77 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999988  88898876411  11111110 111221111 1222   12       23457


Q ss_pred             CEEEEcCCCCCCCC-C--c---hhhHHHhhHHHHHHHHHHH
Q 021932          116 DIVIIPAGVPRKPG-M--T---RDDLFNINAGIVKTLCEGI  150 (305)
Q Consensus       116 DiVIi~ag~~~~~g-~--~---r~d~~~~N~~i~~~i~~~I  150 (305)
                      |+||.++|...... +  +   -...+..|+.....+.+.+
T Consensus        78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~  118 (276)
T PRK06482         78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAA  118 (276)
T ss_pred             CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            99999998653211 1  1   1335567877777777775

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.0099  Score=53.37  Aligned_cols=115  Identities=17%  Similarity=0.164  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---HHHH-------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a-------  111 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++++++  ......++.+..  .++..+. .-++   .++.       
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVER   80 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999998  899999865  222223333221  1222211 1112   1122       


Q ss_pred             hCCCCEEEEcCCCCC--CC--CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          112 LTGMDIVIIPAGVPR--KP--GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       112 l~~aDiVIi~ag~~~--~~--g~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +...|++|.++|...  .+  ..+   -...+..|..    ..+.+.+.+.+.. .+.+++++.
T Consensus        81 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS  143 (254)
T PRK07478         81 FGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTST  143 (254)
T ss_pred             cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence            236899999998632  11  112   2334566664    4555566665443 344555543

>PRK05650 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.0059  Score=55.48  Aligned_cols=113  Identities=19%  Similarity=0.140  Sum_probs=63.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---HHH-------hC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---EDA-------LT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~~a-------l~  113 (305)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|++..  .....++....  .++..+. .-+|.   ++.       +.
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~   76 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG   76 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3799999999999999999999998  8999998652  22222333221  1222111 11121   222       23


Q ss_pred             CCCEEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKP---GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..|++|.++|.....   ..+.   ...+..|..    +.+.+.+.+.+... +.++++|.
T Consensus        77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~vsS  136 (270)
T PRK05650         77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKS-GRIVNIAS  136 (270)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCC-CEEEEECC
Confidence            689999999864321   1111   223455643    44555555555443 44555543

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.011  Score=52.83  Aligned_cols=102  Identities=21%  Similarity=0.228  Sum_probs=58.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCCH----------HHHhC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQL----------EDALT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d~----------~~al~  113 (305)
                      +++.|+||+|.+|..++..|+..|.  +|++.+++.  ......++........+..+. .-++.          .+.+.
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999986  899999875  222222232211112232221 11222          12234


Q ss_pred             CCCEEEEcCCCCCCCCC---c---hhhHHHhhHHHHHHHHHHH
Q 021932          114 GMDIVIIPAGVPRKPGM---T---RDDLFNINAGIVKTLCEGI  150 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g~---~---r~d~~~~N~~i~~~i~~~I  150 (305)
                      ..|++|.++|.......   +   -...+..|......+.+.+
T Consensus        81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~  123 (248)
T PRK08251         81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAA  123 (248)
T ss_pred             CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            78999999986432211   1   1223455655444444443

>PRK12827 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.011  Score=52.44  Aligned_cols=102  Identities=19%  Similarity=0.308  Sum_probs=61.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chh----hhhhhcccCCceEEEEec-CCC---HHHHh---
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGV----TADISHMDTNAVVRGFLG-QQQ---LEDAL---  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~----~~DL~~~~~~~~v~~~~~-t~d---~~~al---  112 (305)
                      .++|.|+||+|.+|..++..|+.+|.  ++++++....  ...    ..++...  ...+..+.. -.|   .++.+   
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~   81 (249)
T PRK12827          6 SRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDAG   81 (249)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHH
Confidence            46899999999999999999999998  8999886431  111    1112111  112222111 112   22222   


Q ss_pred             ----CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHH
Q 021932          113 ----TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIA  151 (305)
Q Consensus       113 ----~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~  151 (305)
                          ...|.||.++|.....   ..+   -...+..|......+++.+.
T Consensus        82 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~  130 (249)
T PRK12827         82 VEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAAL  130 (249)
T ss_pred             HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence                4689999999864321   111   12345677777777777766

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.07  E-value=0.0046  Score=57.83  Aligned_cols=91  Identities=15%  Similarity=0.227  Sum_probs=57.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCC---CCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~---aDiVIi~ag  123 (305)
                      |||+|||. |.+|+.++..|...++  +|+++|+++.+.  ..+.+..    ...   ..++++.+++   +|+||++..
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~~--~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~vp   68 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEAV--DVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMVP   68 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEec
Confidence            48999998 9999999999999888  899999875221  2222211    111   2345566655   699999853


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                      ..               +.++++++.+.... ++.++|..|+
T Consensus        69 ~~---------------~~~~~v~~~i~~~l~~g~ivid~st   95 (299)
T PRK12490         69 AG---------------EVTESVIKDLYPLLSPGDIVVDGGN   95 (299)
T ss_pred             Cc---------------hHHHHHHHHHhccCCCCCEEEECCC
Confidence            11               22333444444433 6677777743

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.07  E-value=0.029  Score=50.15  Aligned_cols=34  Identities=24%  Similarity=0.235  Sum_probs=30.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ++|.|+||+|.+|+.++..|+..|.  +|+++|...
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~   36 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD   36 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence            4799999999999999999999987  899999754

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=97.07  E-value=0.0031  Score=59.42  Aligned_cols=119  Identities=23%  Similarity=0.288  Sum_probs=73.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chh---hhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV---TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~---~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |||+|+|+ |.||+.++..|.+.|.  .+.++-+.+. ...   -+.+.+........... .++ .+.+..+|+||++.
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~-~~~-~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVA-ATD-AEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCcccccccc-ccC-hhhcCCCCEEEEEe
Confidence            69999999 9999999999999994  7777666541 111   12222221101111111 122 46788999999985


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEE-Eeee
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL-GVTM  193 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kvi-G~t~  193 (305)
                          |.            --..+.++.+..+. |+.+|+..=|=++..     +.+++  .+|+++|+ |+|.
T Consensus        76 ----Ka------------~q~~~al~~l~~~~~~~t~vl~lqNG~g~~-----e~l~~--~~~~~~il~G~~~  125 (307)
T COG1893          76 ----KA------------YQLEEALPSLAPLLGPNTVVLFLQNGLGHE-----EELRK--ILPKETVLGGVTT  125 (307)
T ss_pred             ----cc------------ccHHHHHHHhhhcCCCCcEEEEEeCCCcHH-----HHHHH--hCCcceEEEEEee
Confidence                22            22456677777776 677888778888765     22333  35666555 6754

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=97.06  E-value=0.0081  Score=53.56  Aligned_cols=34  Identities=26%  Similarity=0.324  Sum_probs=31.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ++|.|+||+|++|+.++..|+.+|.  +|++++++.
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~   35 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGE   35 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3799999999999999999999998  899999875

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.06  E-value=0.0092  Score=56.05  Aligned_cols=117  Identities=15%  Similarity=0.121  Sum_probs=70.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhh----hhhhcccCCceEEEEecCCCHHHHhCCCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVT----ADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~----~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      .|||+|+|+ |.||..++..|...|.  +|.++++.+  .....    +-+.+......+.... . + .+.....|+||
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~-~-~-~~~~~~~D~vi   75 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPA-E-T-ADAAEPIHRLL   75 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCC-C-C-cccccccCEEE
Confidence            479999999 9999999999998887  899999853  11110    0011101001111111 1 1 13356889999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      +|.    |.            --..+.++.+..+. ++..++.+-|=++..-.+     ++.  +|.+++++-
T Consensus        76 v~v----K~------------~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l-----~~~--~~~~~v~~g  125 (305)
T PRK05708         76 LAC----KA------------YDAEPAVASLAHRLAPGAELLLLQNGLGSQDAV-----AAR--VPHARCIFA  125 (305)
T ss_pred             EEC----CH------------HhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHH-----HHh--CCCCcEEEE
Confidence            985    11            11334455555554 788888888988875432     332  666777754

>PRK08263 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.0035  Score=57.18  Aligned_cols=111  Identities=13%  Similarity=-0.036  Sum_probs=62.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCCH---H-------HHhCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQL---E-------DALTGM  115 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d~---~-------~al~~a  115 (305)
                      ++|.|+||+|.+|+.++..|+.+|.  +|++++++....  .++.+.. ...+..+.. -+|.   .       +.+...
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   78 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTATL--ADLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRL   78 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999997  899999865211  1111110 011111110 1121   1       123467


Q ss_pred             CEEEEcCCCCCCCC---C---chhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932          116 DIVIIPAGVPRKPG---M---TRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       116 DiVIi~ag~~~~~g---~---~r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |.||.++|......   .   +-.+.+..|+..    .+.+.+.+++..... ++++|
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-iv~vs  135 (275)
T PRK08263         79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGH-IIQIS  135 (275)
T ss_pred             CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCE-EEEEc
Confidence            99999999653211   1   123345566665    455555556554444 44444

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.0058  Score=54.74  Aligned_cols=113  Identities=21%  Similarity=0.303  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEe-cCCC---HHHH-------h
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a-------l  112 (305)
                      +.++|.|+||+|.+|..++..|++.|.  +|++++++.. .....++..    ..+..+. .-++   .++.       +
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~   87 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLG----GNAKGLVCDVSDSQSVEAAVAAVISAF   87 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhC----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            345899999999999999999999997  8999998652 111122211    1111110 1111   1122       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~t  163 (305)
                      ...|++|.++|......   .+   -...+..|......+.+.+.++   ...+.++++|
T Consensus        88 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s  147 (255)
T PRK06841         88 GRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLA  147 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence            46799999998643111   11   1234566666555555555443   1234555554

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=97.03  E-value=0.01  Score=53.43  Aligned_cols=35  Identities=34%  Similarity=0.373  Sum_probs=31.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus         8 ~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~   42 (260)
T PRK12823          8 GKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE   42 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            45899999999999999999999998  899999865

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.0046  Score=56.65  Aligned_cols=111  Identities=10%  Similarity=0.039  Sum_probs=63.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHh--------CCCCE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDAL--------TGMDI  117 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al--------~~aDi  117 (305)
                      ++|.|+||+|.+|..++..|+..|.  +|++.++++...  .++.... ...+.. .....+.++++        ...|+
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~--~~l~~~~-~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~   79 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDV--AALEAEG-LEAFQLDYAEPESIAALVAQVLELSGGRLDA   79 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHCC-ceEEEccCCCHHHHHHHHHHHHHHcCCCccE
Confidence            4799999999999999999999998  899999865211  1121111 001111 00001111222        24699


Q ss_pred             EEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932          118 VIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       118 VIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +|.++|......   .+   ..+.+..|+..    .+.+.+.+.+.+. +.|+++|
T Consensus        80 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~-g~iv~is  134 (277)
T PRK05993         80 LFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQ-GRIVQCS  134 (277)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCC-CEEEEEC
Confidence            999998643211   11   23345666654    5667777766543 3455554

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.012  Score=53.37  Aligned_cols=116  Identities=14%  Similarity=0.098  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCC---chhhhhhhcccCCceEEEEec-CCC---HHHHh---
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL---  112 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al---  112 (305)
                      .+.++|.|+||+|.+|..++..|+.++ .  .|+++++++.   .....++.... ..++..+.. -+|   .++.+   
T Consensus         6 ~~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~   82 (253)
T PRK07904          6 GNPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAA   82 (253)
T ss_pred             CCCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHH
Confidence            345589999999999999999998875 6  8999998752   22223343321 112222111 112   11112   


Q ss_pred             ---CCCCEEEEcCCCCCCCCC---ch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932          113 ---TGMDIVIIPAGVPRKPGM---TR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ---~~aDiVIi~ag~~~~~g~---~r---~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t  163 (305)
                         .+.|++|.++|.......   +.   .+.+..|+.    +.+.+.+.+.+.+.. .++++|
T Consensus        83 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~-~iv~is  145 (253)
T PRK07904         83 FAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFG-QIIAMS  145 (253)
T ss_pred             HhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCc-eEEEEe
Confidence               379999999887532111   11   123566654    335567777665544 444443

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.01  E-value=0.0073  Score=53.63  Aligned_cols=102  Identities=18%  Similarity=0.254  Sum_probs=59.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------  112 (305)
                      .+++.|+|++|.+|..++..|+..|.  +|++++++..  .....++...  ..++..+.. -++   +++++       
T Consensus         7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (239)
T PRK07666          7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNEL   82 (239)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  9999998751  1112233221  122332211 112   22223       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHH
Q 021932          113 TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIA  151 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~I~  151 (305)
                      .+.|+||.++|......   .+.   ...+..|+.....+.+.+.
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~  127 (239)
T PRK07666         83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVL  127 (239)
T ss_pred             CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence            37999999998643211   111   2335556554444444443

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.01  E-value=0.013  Score=54.82  Aligned_cols=115  Identities=22%  Similarity=0.143  Sum_probs=64.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---H-------HH
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---E-------DA  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~-------~a  111 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.+++..  .....++........+..+. .-.|+   +       +.
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~   90 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE   90 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            446899999999999999999999997  8999998752  22223333211111222211 11122   1       11


Q ss_pred             hCCCCEEEEcCCCCCCCC--Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932          112 LTGMDIVIIPAGVPRKPG--MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~g--~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ....|++|.+||....+.  .+   ....+..|..    +.+.+.+.+.+.  .+.|+++|
T Consensus        91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vs  149 (313)
T PRK05854         91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQS  149 (313)
T ss_pred             CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEe
Confidence            245899999998643211  11   2223444543    455556555543  34444444

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.00  E-value=0.012  Score=53.29  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA   39 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            446899999999999999999999998  899999865

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=96.99  E-value=0.0071  Score=55.86  Aligned_cols=98  Identities=24%  Similarity=0.264  Sum_probs=64.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC-CCCEEEEcCCCCCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIPAGVPRK  127 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~-~aDiVIi~ag~~~~  127 (305)
                      |.|.|++|+||+++...|...|+  +|.++-++..+...  ..|.    .+...   +.+++... ++|+||..||.|--
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~--~~~~----~v~~~---~~~~~~~~~~~DavINLAG~~I~   69 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQ--NLHP----NVTLW---EGLADALTLGIDAVINLAGEPIA   69 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhh--hcCc----ccccc---chhhhcccCCCCEEEECCCCccc
Confidence            57999999999999999999999  99999886632111  1111    11111   11223333 79999999997632


Q ss_pred             ---CCCch-hhHHHhhHHHHHHHHHHHHHhCCCc
Q 021932          128 ---PGMTR-DDLFNINAGIVKTLCEGIAKCCPKA  157 (305)
Q Consensus       128 ---~g~~r-~d~~~~N~~i~~~i~~~I~~~~p~a  157 (305)
                         ....+ ..+..--+...+.+++.|.+.....
T Consensus        70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P  103 (297)
T COG1090          70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKP  103 (297)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence               32222 3445556788899999999776443

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.98  E-value=0.0039  Score=59.45  Aligned_cols=98  Identities=20%  Similarity=0.276  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ...++|+|||. |.+|+.+|..|...|.  +|..||.......  +....     .. .   .++++.+++||+|+++..
T Consensus       148 L~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--~~~~~-----~~-~---~~l~ell~~aDiV~l~lP  213 (333)
T PRK13243        148 VYGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEA--EKELG-----AE-Y---RPLEELLRESDFVSLHVP  213 (333)
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhh--HHHcC-----CE-e---cCHHHHHhhCCEEEEeCC
Confidence            34569999999 9999999999988887  8999998542111  11110     11 1   256788999999999863


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      ..  + +        +..++..  +.+....|.+++|+++  ..+|.
T Consensus       214 ~t--~-~--------T~~~i~~--~~~~~mk~ga~lIN~aRg~~vd~  247 (333)
T PRK13243        214 LT--K-E--------TYHMINE--ERLKLMKPTAILVNTARGKVVDT  247 (333)
T ss_pred             CC--h-H--------HhhccCH--HHHhcCCCCeEEEECcCchhcCH
Confidence            21  1 1        1111211  2344445889999986  55654

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.98  E-value=0.0044  Score=56.87  Aligned_cols=95  Identities=11%  Similarity=0.127  Sum_probs=56.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHh------CC-CCEEEE
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL------TG-MDIVII  120 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al------~~-aDiVIi  120 (305)
                      ||.|+||+|++|+.++..|+..|+  +|..+.++...........    .... +.....+.+++      ++ +|.|++
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~~~~~~~~~~~----~~~d-~~d~~~l~~a~~~~~~~~g~~d~v~~   73 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSSSSSAGPNEKH----VKFD-WLDEDTWDNPFSSDDGMEPEISAVYL   73 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCCccccCCCCcc----cccc-CCCHHHHHHHHhcccCcCCceeEEEE
Confidence            589999999999999999999888  8999988752111000000    0000 11112345566      67 999998


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN  160 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aivi  160 (305)
                      +++...    ..       .+..+.+++..++.+-+-+|.
T Consensus        74 ~~~~~~----~~-------~~~~~~~i~aa~~~gv~~~V~  102 (285)
T TIGR03649        74 VAPPIP----DL-------APPMIKFIDFARSKGVRRFVL  102 (285)
T ss_pred             eCCCCC----Ch-------hHHHHHHHHHHHHcCCCEEEE
Confidence            765321    11       233456677777666444443

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK07832 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.046  Score=49.69  Aligned_cols=116  Identities=21%  Similarity=0.187  Sum_probs=64.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCc-eEEEEecCCCH----------HHHhC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNA-VVRGFLGQQQL----------EDALT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~-~v~~~~~t~d~----------~~al~  113 (305)
                      +++.|+||+|.+|..++..|+..|.  +|+++++++  ......++....... ...... -+|.          .+.+.
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~~~~~~~~~~~~~~   77 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRALD-ISDYDAVAAFAADIHAAHG   77 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEee-CCCHHHHHHHHHHHHHhcC
Confidence            3799999999999999999999997  899999865  222222333211111 101011 1121          12234


Q ss_pred             CCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 021932          114 GMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNP  165 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~----I~~~~p~aiviv~tNP  165 (305)
                      ..|++|.++|.....   ..+.   ...+..|+.....+.+.    +.+....+.|++++..
T Consensus        78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~  139 (272)
T PRK07832         78 SMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSA  139 (272)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccc
Confidence            689999999864211   1122   23455566544444444    4333334566666544

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.98  E-value=0.0091  Score=55.59  Aligned_cols=67  Identities=22%  Similarity=0.312  Sum_probs=44.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-----hhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-----GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-----g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      ..+||+|+|. |.+|..++..|...|+  .+.+++.+...     +..+++.+..    .     .+...++.++||+||
T Consensus         2 ~~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d~~----~-----~~~~~~~~~~aD~Vi   69 (279)
T COG0287           2 ASMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVIDEL----T-----VAGLAEAAAEADLVI   69 (279)
T ss_pred             CCcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCccccc----c-----cchhhhhcccCCEEE
Confidence            3569999998 9999999999999999  55555554411     1112222211    0     111247789999999


Q ss_pred             EcCC
Q 021932          120 IPAG  123 (305)
Q Consensus       120 i~ag  123 (305)
                      ++..
T Consensus        70 vavP   73 (279)
T COG0287          70 VAVP   73 (279)
T ss_pred             Eecc
Confidence            9864

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.97  E-value=0.0066  Score=54.50  Aligned_cols=117  Identities=13%  Similarity=0.124  Sum_probs=66.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---HHHHh-----
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-----  112 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al-----  112 (305)
                      .+.++|.|+||+|.+|..++..|+..|.  +|+++|+++  +.....++....  .++..+. .-+|   +.+++     
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   84 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDA   84 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence            3455899999999999999999999998  999999875  222223333211  1122111 1112   22222     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecCC
Q 021932          113 --TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISNP  165 (305)
Q Consensus       113 --~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~----~~I~~~~p~aiviv~tNP  165 (305)
                        ...|++|.++|.....   ..+   -...+..|+.-...+.    +.+.+.. .+.+++++..
T Consensus        85 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~ss~  148 (256)
T PRK06124         85 EHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQG-YGRIIAITSI  148 (256)
T ss_pred             hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEeec
Confidence              3468999999864211   111   1234556666555555    4443333 4556666654

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.97  E-value=0.0029  Score=56.35  Aligned_cols=97  Identities=16%  Similarity=0.185  Sum_probs=61.7

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCCCCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVPRK  127 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~~~  127 (305)
                      |+|+||+|.+|+.++..|+..++  +|..+=++........|.+... .-+.. +.....+.++|+|+|.||++.+... 
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~-   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSH-   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSC-
T ss_pred             CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcch-
Confidence            78999999999999999999777  7787776652222333443321 11111 1111346678999999999876432 


Q ss_pred             CCCchhhHHHhhHHHHHHHHHHHHHhCCCcE
Q 021932          128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAI  158 (305)
Q Consensus       128 ~g~~r~d~~~~N~~i~~~i~~~I~~~~p~ai  158 (305)
                        .       .-.+..+.++++..+.+-+-+
T Consensus        77 --~-------~~~~~~~~li~Aa~~agVk~~   98 (233)
T PF05368_consen   77 --P-------SELEQQKNLIDAAKAAGVKHF   98 (233)
T ss_dssp             --C-------CHHHHHHHHHHHHHHHT-SEE
T ss_pred             --h-------hhhhhhhhHHHhhhccccceE
Confidence              1       124556777888888775444

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.96  E-value=0.0054  Score=57.38  Aligned_cols=64  Identities=16%  Similarity=0.252  Sum_probs=44.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCC---CCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~---aDiVIi~a  122 (305)
                      |||+|||. |.+|+.++..|+..|+  +|.++|+++..  ..++.+..    +..   ..++++.++.   +|+||++.
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEEG----ATG---ADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence            48999998 9999999999999998  99999997522  12222211    111   1244455554   69999985

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=96.96  E-value=0.008  Score=56.31  Aligned_cols=36  Identities=17%  Similarity=0.051  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.++|.|+||+|.+|..++..|+..|.  +|++++++.
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~   40 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNL   40 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence            345899999999999999999999997  899999865

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.012  Score=52.59  Aligned_cols=75  Identities=13%  Similarity=0.129  Sum_probs=47.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch-hhhh-hhcccCCceEEEEe-cCC---CHHHHhC-CCCEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTAD-ISHMDTNAVVRGFL-GQQ---QLEDALT-GMDIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g-~~~D-L~~~~~~~~v~~~~-~t~---d~~~al~-~aDiVI  119 (305)
                      ++|.|+||+|.+|..++..|++.|.  ++++++++.... ...+ ....  ...+..+. .-+   ++.+++. +.|+||
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~id~vi   78 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARR--GLALRVEKLDLTDAIDRAQAAEWDVDVLL   78 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence            4799999999999999999999997  888888764211 1111 1111  11122111 111   2334444 899999


Q ss_pred             EcCCCC
Q 021932          120 IPAGVP  125 (305)
Q Consensus       120 i~ag~~  125 (305)
                      .++|..
T Consensus        79 ~~ag~~   84 (257)
T PRK09291         79 NNAGIG   84 (257)
T ss_pred             ECCCcC
Confidence            999865

>PRK05876 short chain dehydrogenase; Provisional

Probab=96.94  E-value=0.011  Score=54.27  Aligned_cols=114  Identities=16%  Similarity=0.134  Sum_probs=64.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHH-------hC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------LT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-------l~  113 (305)
                      +.+.|+||+|.+|..++..|+..|.  +|++.|+++  +.....++...  ..++..+.. -+|   +++.       +.
T Consensus         7 k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          7 RGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAE--GFDVHGVMCDVRHREEVTHLADEAFRLLG   82 (275)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999998  899999875  22222233321  112222111 112   2222       23


Q ss_pred             CCCEEEEcCCCCCCC---CCch---hhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKP---GMTR---DDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..|++|.++|.....   ..+.   ...+..|+...    +.+.+.+.+.+..+.+++++.
T Consensus        83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS  143 (275)
T PRK05876         83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS  143 (275)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            579999999864211   1122   23345565444    444444545543455666553

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.94  E-value=0.0097  Score=53.42  Aligned_cols=115  Identities=19%  Similarity=0.261  Sum_probs=64.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---HH-------H
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---ED-------A  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~~-------a  111 (305)
                      ..+++.|+||+|.+|..++..|+..|.  +|++.|++..  .....++.+..  ..+..+. .-+|.   ++       .
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKD   83 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999997  9999998752  22222333221  1121111 11121   11       1


Q ss_pred             hCCCCEEEEcCCCCCC-C--CC---chhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEec
Q 021932          112 LTGMDIVIIPAGVPRK-P--GM---TRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLIS  163 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~-~--g~---~r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~t  163 (305)
                      +...|++|.++|.... +  ..   +-...+..|......+.+.+.++   ...+.++++|
T Consensus        84 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~is  144 (254)
T PRK08085         84 IGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINIC  144 (254)
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEc
Confidence            2357999999986421 1  11   12234556655544444444433   2234555554

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.94  E-value=0.02  Score=50.61  Aligned_cols=107  Identities=21%  Similarity=0.182  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCC----HHHHhCCCCEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ----LEDALTGMDIVI  119 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d----~~~al~~aDiVI  119 (305)
                      +.+++.|+|++|.+|..++..|++.|.  +|+++|++....    +.     .++..+.. -++    ..+.+...|++|
T Consensus         4 ~~k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~~-----~~~~~~~~D~~~~~~~~~~~~~~id~lv   72 (235)
T PRK06550          4 MTKTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----LS-----GNFHFLQLDLSDDLEPLFDWVPSVDILC   72 (235)
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----cC-----CcEEEEECChHHHHHHHHHhhCCCCEEE
Confidence            345899999999999999999999998  899999865211    00     11111110 011    123356789999


Q ss_pred             EcCCCCCC--C--CCc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEec
Q 021932          120 IPAGVPRK--P--GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLIS  163 (305)
Q Consensus       120 i~ag~~~~--~--g~~---r~d~~~~N~~i~~~i~~~I----~~~~p~aiviv~t  163 (305)
                      .++|....  +  ..+   -...+..|+.....+.+.+    .+.. .+.+++++
T Consensus        73 ~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~s  126 (235)
T PRK06550         73 NTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERK-SGIIINMC  126 (235)
T ss_pred             ECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEc
Confidence            99986421  1  111   1234556655444444444    3332 34555554

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0088  Score=53.19  Aligned_cols=35  Identities=23%  Similarity=0.244  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ++++.|+|++|.+|..++..|+++|.  +|+++|+++
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   40 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQ   40 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999999998  899999875

>PRK09186 flagellin modification protein A; Provisional

Probab=96.92  E-value=0.011  Score=52.96  Aligned_cols=35  Identities=23%  Similarity=0.266  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+++.
T Consensus         4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~   38 (256)
T PRK09186          4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK   38 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence            35899999999999999999999998  899998865

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.91  E-value=0.0067  Score=54.43  Aligned_cols=96  Identities=19%  Similarity=0.302  Sum_probs=67.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      +||+|||. |.+|..+...+.... -++-+.+||.+..+.  ..+......+.      .++..+.+.+.|++|.+|+  
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~--~~~~~~~~~~~------~s~ide~~~~~DlvVEaAS--   69 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKA--KELEASVGRRC------VSDIDELIAEVDLVVEAAS--   69 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHH--HHHHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence            58999999 999999988776553 356778899875322  22232211111      1355566799999999984  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                                    .+.+++++.++-+.+.|.+|+-+.--+|
T Consensus        70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad   97 (255)
T COG1712          70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD   97 (255)
T ss_pred             --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence                          4678999999999999988877665554

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.91  E-value=0.005  Score=55.43  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=31.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      |+++|+|+ |.+|+++|..|...|+  +++++|.++
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~   33 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDE   33 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCH
Confidence            68999999 9999999999999999  999999987

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.90  E-value=0.011  Score=56.00  Aligned_cols=92  Identities=18%  Similarity=0.265  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ..++|+|+|. |.+|+.+|..|...|.  +|..+|......  ..         +..+....++++.+++||+|+++...
T Consensus       135 ~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~--~~---------~~~~~~~~~l~e~l~~aDvvv~~lPl  200 (312)
T PRK15469        135 EDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSW--PG---------VQSFAGREELSAFLSQTRVLINLLPN  200 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCC--CC---------ceeecccccHHHHHhcCCEEEECCCC
Confidence            4469999998 9999999999998888  999999743110  00         00011123578999999999998532


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .           ..+..++.  .+.+.+..|++++|+++
T Consensus       201 t-----------~~T~~li~--~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        201 T-----------PETVGIIN--QQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             C-----------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence            1           11222222  23455556889999986

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.012  Score=53.05  Aligned_cols=114  Identities=17%  Similarity=0.178  Sum_probs=65.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCCH---HHH-------hC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQL---EDA-------LT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d~---~~a-------l~  113 (305)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++....  ..+..+.. -.|.   .++       +.
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   77 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG   77 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999998887  8999998752  22222333221  22222111 1222   122       23


Q ss_pred             CCCEEEEcCCCCCCCC---C-ch---hhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKPG---M-TR---DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~-~r---~d~~~~N~~i~~~i~~~I~~~~--p~aiviv~tN  164 (305)
                      +.|+||.++|......   . +.   .+.+..|+.....+.+.+.++-  ..+.+++++.
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS  137 (263)
T PRK06181         78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSS  137 (263)
T ss_pred             CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence            6899999998643211   1 11   2335666666666655554322  1345555544

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.89  E-value=0.0082  Score=54.13  Aligned_cols=115  Identities=19%  Similarity=0.270  Sum_probs=65.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe-cCC---CHHHH-------hCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQ---QLEDA-------LTG  114 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~t~---d~~~a-------l~~  114 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|++++.++.......+...  ..++..+. .-+   +.++.       +..
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEAL--GRKFHFITADLIQQKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999998  89998875422211222211  11222111 111   22222       235


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       115 aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      .|++|.++|......   .+   ....+..|+.    +.+.+.+.+.+....+.|++++.
T Consensus        84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS  143 (251)
T PRK12481         84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIAS  143 (251)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCC
Confidence            799999998643211   11   2233455644    45555555555443466666654

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.89  E-value=0.0032  Score=56.66  Aligned_cols=111  Identities=19%  Similarity=0.281  Sum_probs=62.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh-------hhhhhcccCCceEEEEecCCCHHHHhCCCCEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-------TADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~-------~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiV  118 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++....       ..|+.+..   .+....  ....+.+...|+|
T Consensus         9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~D~~~~~---~~~~~~--~~~~~~~~~id~v   81 (260)
T PRK06523          9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSRPDDLPEGVEFVAADLTTAE---GCAAVA--RAVLERLGGVDIL   81 (260)
T ss_pred             CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCChhhhcCCceeEEecCCCCHH---HHHHHH--HHHHHHcCCCCEE
Confidence            35899999999999999999999998  8999998652110       01111110   000000  0112334578999


Q ss_pred             EEcCCCCCCC-C----Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          119 IIPAGVPRKP-G----MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       119 Ii~ag~~~~~-g----~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      |.++|..... +    .+   ..+.+..|+.    +.+.+.+.+.+... +.++++|.
T Consensus        82 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~ii~isS  138 (260)
T PRK06523         82 VHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGS-GVIIHVTS  138 (260)
T ss_pred             EECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC-cEEEEEec
Confidence            9999853211 1    11   2233445544    34555566655443 45555554

>PRK07574 formate dehydrogenase; Provisional

Probab=96.88  E-value=0.0099  Score=57.79  Aligned_cols=101  Identities=17%  Similarity=0.215  Sum_probs=64.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ....++|+|||. |.+|..+|..|...|.  +|+.+|.......   .....   .+...   .++++.++.||+|+++.
T Consensus       189 ~L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~---~~~~~---g~~~~---~~l~ell~~aDvV~l~l  256 (385)
T PRK07574        189 DLEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEE---VEQEL---GLTYH---VSFDSLVSVCDVVTIHC  256 (385)
T ss_pred             ecCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchh---hHhhc---Cceec---CCHHHHhhcCCEEEEcC
Confidence            345579999999 9999999999988887  9999998642111   11110   12211   35788999999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      ...  +         ++-.++.  .+.+....|.+++|+++  ..+|.
T Consensus       257 Plt--~---------~T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe  291 (385)
T PRK07574        257 PLH--P---------ETEHLFD--ADVLSRMKRGSYLVNTARGKIVDR  291 (385)
T ss_pred             CCC--H---------HHHHHhC--HHHHhcCCCCcEEEECCCCchhhH
Confidence            321  1         1112221  23344445788999886  44553

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.88  E-value=0.0063  Score=55.54  Aligned_cols=68  Identities=18%  Similarity=0.240  Sum_probs=45.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |||+|||+ |.+|..++..|...++ ..++.++|.+...  +.++....  ..+...   .+..+.++++|+||++.
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~--~~~~~~---~~~~~~~~~aDvVilav   69 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF--PKVRIA---KDNQAVVDRSDVVFLAV   69 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc--CCceEe---CCHHHHHHhCCEEEEEe
Confidence            48999998 9999999999988775 3456778775422  22222211  112221   35567789999999986

>PRK08264 short chain dehydrogenase; Validated

Probab=96.88  E-value=0.022  Score=50.41  Aligned_cols=114  Identities=14%  Similarity=0.066  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEE----ecCCCHHHHh---CCCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDAL---TGMD  116 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~----~~t~d~~~al---~~aD  116 (305)
                      .+.++|.|+||+|.+|+.++..|+..|. .+|++++++......     .  ...+..+    ....++++.+   ...|
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~-----~--~~~~~~~~~D~~~~~~~~~~~~~~~~id   75 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVTD-----L--GPRVVPLQLDVTDPASVAAAAEAASDVT   75 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhhh-----c--CCceEEEEecCCCHHHHHHHHHhcCCCC
Confidence            3446899999999999999999998885 378888876521111     1  0111111    1111222333   3589


Q ss_pred             EEEEcCCCCCCCC----Cch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 021932          117 IVIIPAGVPRKPG----MTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP  165 (305)
Q Consensus       117 iVIi~ag~~~~~g----~~r---~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tNP  165 (305)
                      +||.++|.....+    .+.   .+.+..|......+.+.+.+.   ...+.++++|..
T Consensus        76 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~  134 (238)
T PRK08264         76 ILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSV  134 (238)
T ss_pred             EEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCh
Confidence            9999998732111    111   233455665555555554432   234455555543

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.011  Score=53.30  Aligned_cols=116  Identities=22%  Similarity=0.233  Sum_probs=66.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCHH---HH------
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQLE---DA------  111 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~~---~a------  111 (305)
                      .+.++|.|+||+|.+|..++..|+.+|.  +|+++++++.  .....++..   ..++..+. .-.|.+   +.      
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~   77 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARARE   77 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHh
Confidence            3446899999999999999999999997  8999998751  111122211   11222211 112221   11      


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                      +...|++|.++|......   .+   -.+.+..|+.....+.+.+.++   .+.+.+++++.
T Consensus        78 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS  139 (263)
T PRK09072         78 MGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGS  139 (263)
T ss_pred             cCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence            356799999998643211   11   1234556766655555555432   22355555554

>PRK06398 aldose dehydrogenase; Validated

Probab=96.88  E-value=0.028  Score=50.81  Aligned_cols=111  Identities=19%  Similarity=0.208  Sum_probs=62.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch-----hhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g-----~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++...     ...|+.+..   .+...  -....+.+...|++|.
T Consensus         6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~D~~~~~---~i~~~--~~~~~~~~~~id~li~   78 (258)
T PRK06398          6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFKVDVSNKE---QVIKG--IDYVISKYGRIDILVN   78 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEEccCCCHH---HHHHH--HHHHHHHcCCCCEEEE
Confidence            35899999999999999999999998  899999865211     111222211   00000  0011122357899999


Q ss_pred             cCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          121 PAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       121 ~ag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ++|.....   ..+   -.+.+..|+...    +.+.+.+.+. ..+.|+++|.
T Consensus        79 ~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS  131 (258)
T PRK06398         79 NAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINIAS  131 (258)
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence            99864321   111   223355665544    4444444433 3455555543

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.88  E-value=0.0095  Score=52.62  Aligned_cols=116  Identities=22%  Similarity=0.289  Sum_probs=64.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEe-cCCC---HHHH------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL-GQQQ---LEDA------  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a------  111 (305)
                      +.++|.|+|++|.+|+.++..|++.|.  +|+++..+..   .....++...  ..++..+. .-.+   +.++      
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGAL--GGKALAVQGDVSDAESVERAVDEAKA   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            446899999999999999999999988  7777765442   1111222211  11222111 1112   1122      


Q ss_pred             -hCCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhC---CCcEEEEecC
Q 021932          112 -LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTLCEGIAKCC---PKAIVNLISN  164 (305)
Q Consensus       112 -l~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i~~~I~~~~---p~aiviv~tN  164 (305)
                       +.+.|.||.++|.....   ..+.   ...+..|+.....+.+.+.++.   ....++++|.
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss  142 (248)
T PRK05557         80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS  142 (248)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence             23689999999864321   1111   2234567766666666666543   2234444443

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.0058  Score=54.98  Aligned_cols=34  Identities=18%  Similarity=0.193  Sum_probs=31.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ++|.|+||+|.+|..++..|++.|.  +|+++|++.
T Consensus         8 ~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~   41 (255)
T PRK06057          8 RVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP   41 (255)
T ss_pred             CEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            5899999999999999999999998  899999875

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.87  E-value=0.0078  Score=63.08  Aligned_cols=92  Identities=21%  Similarity=0.319  Sum_probs=60.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      +||+|||+ |.+|..++..+...|+..+|..+|.++.. ..+.++   ...  ..   ..+++.++++++|+||++... 
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~---g~~--~~---~~~~~~~~~~~aDvVilavp~-   73 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL---GVI--DR---GEEDLAEAVSGADVIVLAVPV-   73 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHC---CCC--Cc---ccCCHHHHhcCCCEEEECCCH-
Confidence            58999998 99999999999988854479999987621 111211   110  01   123567789999999998631 


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                                     ..+.++++.+.++. ++.+|+.++
T Consensus        74 ---------------~~~~~vl~~l~~~~~~~~ii~d~~   97 (735)
T PRK14806         74 ---------------LAMEKVLADLKPLLSEHAIVTDVG   97 (735)
T ss_pred             ---------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence                           23455666666654 555555443

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=96.87  E-value=0.0071  Score=56.81  Aligned_cols=108  Identities=18%  Similarity=0.279  Sum_probs=63.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCCc--hh---hh--------hhhcccCCceEEEEecCCCHHHH
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTP--GV---TA--------DISHMDTNAVVRGFLGQQQLEDA  111 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~~~--g~---~~--------DL~~~~~~~~v~~~~~t~d~~~a  111 (305)
                      ++||+-||| |+||......++. ++. .+|.++|++..+  +.   .+        |....-...++- |  ++|.+.+
T Consensus         1 ~~kicciga-gyvggptcavia~kcp~-i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlf-f--stdieka   75 (481)
T KOG2666|consen    1 MVKICCIGA-GYVGGPTCAVIALKCPD-IEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLF-F--STDIEKA   75 (481)
T ss_pred             CceEEEecC-cccCCcchheeeecCCc-eEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCcee-e--ecchHHH
Confidence            369999999 9998766544443 443 399999997621  11   01        111111123333 3  4688999


Q ss_pred             hCCCCEEEEcCCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932          112 LTGMDIVIIPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN  160 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~-g~~r~d~~~~N~~i~~~i~~~I~~~~p~aivi  160 (305)
                      ++.||+|++....|.|. |....  ....++.....++.|.+++....++
T Consensus        76 i~eadlvfisvntptkt~g~gkg--~aadlky~es~ar~ia~~s~~~kiv  123 (481)
T KOG2666|consen   76 IKEADLVFISVNTPTKTYGLGKG--KAADLKYWESAARMIADVSVSDKIV  123 (481)
T ss_pred             hhhcceEEEEecCCcccccCCCC--cccchhHHHHHHHHHHHhccCCeEE
Confidence            99999999998877653 21100  0123455666666666666433333

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.86  E-value=0.0087  Score=56.41  Aligned_cols=102  Identities=20%  Similarity=0.265  Sum_probs=64.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      ...+||+|+|+ |.+|..++..|...+. .+|.++|++..+  ..+.++.     ..+..   ..++++++.++|+||.+
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~a  245 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISA  245 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEEC
Confidence            45679999999 9999999988887553 489999986522  2222221     11111   12566888999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~l  169 (305)
                      .+.+..            ..++.+..+..  .....+++-+++|-|+=
T Consensus       246 t~~~~~------------~~~~~~~~~~~--~~~~~~viDlavPrdi~  279 (311)
T cd05213         246 TGAPHY------------AKIVERAMKKR--SGKPRLIVDLAVPRDIE  279 (311)
T ss_pred             CCCCch------------HHHHHHHHhhC--CCCCeEEEEeCCCCCCc
Confidence            875521            11122221111  12456888899999864

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK12746 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.022  Score=51.00  Aligned_cols=114  Identities=18%  Similarity=0.174  Sum_probs=62.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC--CchhhhhhhcccCCceEEEEe-cCCC---HHHHh-------
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D-~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al-------  112 (305)
                      ++|.|+||+|.+|+.++..|+.+|.  ++++++ .+.  ......++...  ...+..+. .-+|   ..+++       
T Consensus         7 ~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~~~~~~~~~   82 (254)
T PRK12746          7 KVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESN--GGKAFLIEADLNSIDGVKKLVEQLKNEL   82 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCcCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999999987  776653 432  11111122211  11122111 1122   22222       


Q ss_pred             ------CCCCEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          113 ------TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       113 ------~~aDiVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                            .+.|++|.++|......   .+.   ...+..|+.....+.+.+.++. ..+.++++|.
T Consensus        83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS  147 (254)
T PRK12746         83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS  147 (254)
T ss_pred             ccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence                  25899999998643211   111   2345567776666666666543 2244555543

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.85  E-value=0.012  Score=47.94  Aligned_cols=73  Identities=23%  Similarity=0.329  Sum_probs=45.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccC--CceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |||+|+|++|.+|+.++..+...+-..=+..+|.++......|+.+...  ...+..   ++|+++.+..+|+||-..
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v---~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV---TDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE---BS-HHHHTTH-SEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCccccc---chhHHHhcccCCEEEEcC
Confidence            5999999999999999999988543323456666541112233333211  122222   357888999999988863

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.85  E-value=0.0062  Score=58.67  Aligned_cols=71  Identities=18%  Similarity=0.248  Sum_probs=47.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHH-hCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMK-INPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~-~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +||+|+||+|.||+.+...|. +..+ ..+++++......|........  ...++.   .++ .+++++.|++|+++|
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~--~~~v~~---~~~-~~~~~~vDivffa~g   73 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQD---AFD-IDALKALDIIITCQG   73 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCC--cceEEc---Ccc-cccccCCCEEEEcCC
Confidence            489999999999999999888 5555 3788888875543443322221  112332   112 247899999999986

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=96.85  E-value=0.019  Score=50.56  Aligned_cols=113  Identities=18%  Similarity=0.238  Sum_probs=65.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEe-cCCC---HHHHh-------CC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------TG  114 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al-------~~  114 (305)
                      |.|+|++|.+|+.++..|+++|+  +|++++.+.   ......++.+..  .++.... .-+|   +++.+       ..
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYG--VKALGVVCDVSDREDVKAVVEEIEEELGP   76 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999999998  899998754   112222333221  1122111 1112   22233       34


Q ss_pred             CCEEEEcCCCCCCC---C---CchhhHHHhhHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 021932          115 MDIVIIPAGVPRKP---G---MTRDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNP  165 (305)
Q Consensus       115 aDiVIi~ag~~~~~---g---~~r~d~~~~N~~i~~~i~~~I~~~~---p~aiviv~tNP  165 (305)
                      .|+||.++|.....   +   ....+.+..|......+.+.+.++.   ..+.++++|..
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~  136 (239)
T TIGR01830        77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSV  136 (239)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence            69999999864211   1   1224456678777777777666542   23455555543

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=96.84  E-value=0.012  Score=54.87  Aligned_cols=117  Identities=19%  Similarity=0.157  Sum_probs=74.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh---hhhhhcccCCceEEE-EecCCCHHHHhC--CCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTNAVVRG-FLGQQQLEDALT--GMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~---~~DL~~~~~~~~v~~-~~~t~d~~~al~--~aDiVIi  120 (305)
                      |++.|+|++||+|+++...+..+....+|+.+|.-.-.|.   ..++.+......+++ +.......+.++  +.|.|+.
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            5899999999999999988777665457888887541222   234444322222332 111122334555  6899999


Q ss_pred             cCCCCC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCC-cEEEEec
Q 021932          121 PAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLIS  163 (305)
Q Consensus       121 ~ag~~~--~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~-aiviv~t  163 (305)
                      .|.-..  +.=....++++.|+-....+.+..+++... -++-|.|
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HIST  126 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHIST  126 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEecc
Confidence            775221  000123567899999999999999999864 3444444

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.84  E-value=0.011  Score=56.38  Aligned_cols=68  Identities=18%  Similarity=0.151  Sum_probs=47.6

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ..+.+||+|||. |.+|.++|..|...|+  +|+..+......  .+......   +..    .+.++++++||+|+++.
T Consensus        14 ~L~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s--~~~A~~~G---~~~----~s~~eaa~~ADVVvLaV   81 (330)
T PRK05479         14 LIKGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKS--WKKAEADG---FEV----LTVAEAAKWADVIMILL   81 (330)
T ss_pred             hhCCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhh--HHHHHHCC---Cee----CCHHHHHhcCCEEEEcC
Confidence            345569999999 9999999999999998  888877653211  11111111   111    25678999999999986

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.84  E-value=0.022  Score=51.32  Aligned_cols=116  Identities=21%  Similarity=0.228  Sum_probs=64.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHHh-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al-------  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.......++..+. .-+|   .++.+       
T Consensus         7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            34799999999999999999999998  8999998762  22223333210111222211 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCC--C-Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKP--G-MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~--g-~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ...|++|.++|.....  . .+   -...+..|+...    +.+.+.+.+.. .+.|+++|.
T Consensus        85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS  145 (260)
T PRK07063         85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERG-RGSIVNIAS  145 (260)
T ss_pred             CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhC-CeEEEEECC
Confidence            3689999999864211  1 11   122344555444    44444454433 355555543

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=96.84  E-value=0.0099  Score=53.75  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=31.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++
T Consensus         9 ~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~   43 (266)
T PRK06171          9 GKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG   43 (266)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            45899999999999999999999998  999999875

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.01  Score=53.22  Aligned_cols=34  Identities=35%  Similarity=0.322  Sum_probs=30.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +++.|+||+|.+|..++..|++.|.  +|+++|++.
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~   36 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDA   36 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999887  899999865

>PRK06128 oxidoreductase; Provisional

Probab=96.83  E-value=0.018  Score=53.47  Aligned_cols=115  Identities=23%  Similarity=0.246  Sum_probs=67.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC----chhhhhhhcccCCceEEEEe-cCCC---HH-------H
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTNAVVRGFL-GQQQ---LE-------D  110 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~----~g~~~DL~~~~~~~~v~~~~-~t~d---~~-------~  110 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+.+..    ......+....  .++..+. .-+|   .+       +
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  130 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence            36899999999999999999999998  8888766431    11112222211  1122111 1112   11       2


Q ss_pred             HhCCCCEEEEcCCCCC--CC--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          111 ALTGMDIVIIPAGVPR--KP--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       111 al~~aDiVIi~ag~~~--~~--g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                      .+...|++|.++|...  .+  ..+   ....+..|+.....+++.+.++- ..+.|++++.
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS  192 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS  192 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence            2346899999998642  11  112   23456778777777777776553 3456666654

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=96.83  E-value=0.017  Score=51.39  Aligned_cols=115  Identities=15%  Similarity=0.203  Sum_probs=64.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEec-CCC---HHHHh------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al------  112 (305)
                      .+++.|+||+|.+|+.++..|+..|.  ++++.+...   ......++.+.  ..++..+.. .+|   ..+++      
T Consensus         6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (247)
T PRK12935          6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKE--GHDVYAVQADVSKVEDANRLVEEAVNH   81 (247)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999887  777655432   11122233321  122322211 112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          113 -TGMDIVIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~g------~~r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                       ...|+||.++|......      +.-.+.+..|......+.+.+.++   ...+.+++++.
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  143 (247)
T PRK12935         82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS  143 (247)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence             34799999998643211      122344566766655555555543   23345555554

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=96.83  E-value=0.0058  Score=57.12  Aligned_cols=64  Identities=17%  Similarity=0.305  Sum_probs=46.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      |||++||. |.+|..++..|...|+  ++.++|+++.   ..++....    ...   ..+..++.+++|+||++..
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g----~~~---~~s~~~~~~~advVi~~v~   64 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG----AVS---VETARQVTEASDIIFIMVP   64 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence            48999998 9999999999999998  8899998652   12222211    111   1245677899999999863

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.031  Score=50.86  Aligned_cols=115  Identities=15%  Similarity=0.150  Sum_probs=66.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHh------C
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------T  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al------~  113 (305)
                      .+.+.|+||+|.+|..++..|+..|.  +|+++|++.  +.....++.... ..++..+.. -+|   .++.+      .
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          8 GKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            34789999999999999999999998  899999875  222222332211 112222111 112   22222      3


Q ss_pred             CCCEEEEcCCCCCCC---CCch---hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~r---~d~~~~N----~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..|++|.++|.+...   ..+.   ...+..|    +...+.+.+.+.+.. .+.|+++|.
T Consensus        85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS  144 (263)
T PRK08339         85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTS  144 (263)
T ss_pred             CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            589999999864321   1122   2233444    445677777776554 355555554

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.83  E-value=0.012  Score=57.81  Aligned_cols=129  Identities=19%  Similarity=0.152  Sum_probs=79.0

Q ss_pred             cchhhHHHHHHH--hhhCCCccc-------------c-ccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHh
Q 021932            5 TSGANQRIARIA--AHLHPPTLQ-------------I-EGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKI   68 (305)
Q Consensus         5 ~~~~~~~~~~~~--~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~   68 (305)
                      |.+--+|+.+++  +.|.-|-+-             . +|++ .|..+.-.-.......+|+|+|+ |.+|..++..+..
T Consensus       146 TttGv~rl~~~~~~~~l~~Pv~~vnds~~K~~~dn~~g~g~s-~~~~i~r~t~~~l~GktVvViG~-G~IG~~va~~ak~  223 (413)
T cd00401         146 TTTGVHRLYKMEKEGKLKFPAINVNDSVTKSKFDNLYGCRES-LIDGIKRATDVMIAGKVAVVAGY-GDVGKGCAQSLRG  223 (413)
T ss_pred             chHHHHHHHHHHHCCCCCCCEEEecchhhcccccccchhchh-hHHHHHHhcCCCCCCCEEEEECC-CHHHHHHHHHHHH
Confidence            555567877775  447666651             2 4555 34333222112234569999999 9999999999988


Q ss_pred             CCCCcEEEEEeCCCCc-hhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHH
Q 021932           69 NPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLC  147 (305)
Q Consensus        69 ~~~~~el~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~  147 (305)
                      .|.  +|+.+|+++.+ ..+.++  .  .   ...    +.+++++++|+||.+.|.+               .++..  
T Consensus       224 ~Ga--~ViV~d~d~~R~~~A~~~--G--~---~~~----~~~e~v~~aDVVI~atG~~---------------~~i~~--  273 (413)
T cd00401         224 QGA--RVIVTEVDPICALQAAME--G--Y---EVM----TMEEAVKEGDIFVTTTGNK---------------DIITG--  273 (413)
T ss_pred             CCC--EEEEEECChhhHHHHHhc--C--C---EEc----cHHHHHcCCCEEEECCCCH---------------HHHHH--
Confidence            887  78889987632 222211  1  1   111    2357889999999987532               12221  


Q ss_pred             HHHHHhCCCcEEEEecCC
Q 021932          148 EGIAKCCPKAIVNLISNP  165 (305)
Q Consensus       148 ~~I~~~~p~aiviv~tNP  165 (305)
                      ..+....+.+++++++.+
T Consensus       274 ~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         274 EHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             HHHhcCCCCcEEEEeCCC
Confidence            113334578899999865

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06701 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.038  Score=51.18  Aligned_cols=118  Identities=14%  Similarity=0.135  Sum_probs=69.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEec-CCC---HHHHh---
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL---  112 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al---  112 (305)
                      +.+.++|.|+||+|.+|..++..|+..|.  +|+++++++.   ......+...  ..++..+.. -++   ..+.+   
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i  118 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEET  118 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHH
Confidence            33446899999999999999999999998  8999998652   1112222211  122222111 111   22222   


Q ss_pred             ----CCCCEEEEcCCCCCC--C--CCc---hhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecC
Q 021932          113 ----TGMDIVIIPAGVPRK--P--GMT---RDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISN  164 (305)
Q Consensus       113 ----~~aDiVIi~ag~~~~--~--g~~---r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~tN  164 (305)
                          ...|++|.++|....  +  ..+   -...+..|+.....+.+.+.+. .+.+.++++|.
T Consensus       119 ~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS  182 (290)
T PRK06701        119 VRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS  182 (290)
T ss_pred             HHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence                357999999986321  1  111   2345677877777777777654 24455666654

>PRK06196 oxidoreductase; Provisional

Probab=96.82  E-value=0.021  Score=53.38  Aligned_cols=112  Identities=21%  Similarity=0.175  Sum_probs=63.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch--hhhhhhcccCCceEEE-EecCCCHHH-------HhCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRG-FLGQQQLED-------ALTGM  115 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g--~~~DL~~~~~~~~v~~-~~~t~d~~~-------al~~a  115 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+++....  ...++....   -+.. +....+.++       .+.+.
T Consensus        26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~---~~~~Dl~d~~~v~~~~~~~~~~~~~i  100 (315)
T PRK06196         26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVE---VVMLDLADLESVRAFAERFLDSGRRI  100 (315)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCe---EEEccCCCHHHHHHHHHHHHhcCCCC
Confidence            35899999999999999999999998  899999875211  111221110   0110 000011111       12468


Q ss_pred             CEEEEcCCCCCCCC----CchhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932          116 DIVIIPAGVPRKPG----MTRDDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       116 DiVIi~ag~~~~~g----~~r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |++|.+||....+.    +.....+..|..    +.+.+.+.+.+.. .+.|+++|
T Consensus       101 D~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vS  155 (315)
T PRK06196        101 DILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALS  155 (315)
T ss_pred             CEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEEC
Confidence            99999998643221    112333455544    4566666666543 34555555

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.82  E-value=0.0063  Score=60.98  Aligned_cols=100  Identities=16%  Similarity=0.182  Sum_probs=62.4

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc-c--CCceEEEEecCCCHHHHhCC---CC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-D--TNAVVRGFLGQQQLEDALTG---MD  116 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~-~--~~~~v~~~~~t~d~~~al~~---aD  116 (305)
                      +...++|++||- |.+|+.+|..|+..|+  +|..+|++..+  +.++.+. .  ....+..   ..++++..+.   +|
T Consensus         3 ~~~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k--~~~l~~~~~~~Ga~~~~~---a~s~~e~v~~l~~~d   74 (493)
T PLN02350          3 SAALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSK--VDETVERAKKEGNLPLYG---FKDPEDFVLSIQKPR   74 (493)
T ss_pred             CCCCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHhhhhcCCccccc---CCCHHHHHhcCCCCC
Confidence            344568999998 9999999999999999  99999986522  1222221 0  0011111   2345555554   99


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 021932          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (305)
Q Consensus       117 iVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNP  165 (305)
                      +||++...               -+.++++...+.... |..++|-.||-
T Consensus        75 vIi~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT~  109 (493)
T PLN02350         75 SVIILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGNE  109 (493)
T ss_pred             EEEEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence            99998531               233444444455443 67777777653

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.033  Score=49.49  Aligned_cols=101  Identities=19%  Similarity=0.180  Sum_probs=61.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH----------HHHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL----------EDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~----------~~al  112 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++.  .....++.     ..+..+. ...|.          .+.+
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAF   78 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999998  8999998651  11111111     1111111 11121          1223


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC  153 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~  153 (305)
                      ...|++|.++|......   .+   -...+..|+.....+.+.+.++
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  125 (249)
T PRK06500         79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPL  125 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            47899999998643211   11   2235667777777777777653

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.0097  Score=52.08  Aligned_cols=73  Identities=19%  Similarity=0.210  Sum_probs=46.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec----CCCHHHHhC---CCCEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALT---GMDIV  118 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~---~aDiV  118 (305)
                      ++++.|+||+|.+|..++..|+++ .  +|+++|++...  ..++.+..  ..+..+..    ..+++++++   +.|+|
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~id~v   75 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAEL--PGATPFPVDLTDPEAIAAAVEQLGRLDVL   75 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHh--ccceEEecCCCCHHHHHHHHHhcCCCCEE
Confidence            458999999999999999999887 5  89999986421  11222111  01111111    123334444   69999


Q ss_pred             EEcCCCC
Q 021932          119 IIPAGVP  125 (305)
Q Consensus       119 Ii~ag~~  125 (305)
                      |.++|..
T Consensus        76 i~~ag~~   82 (227)
T PRK08219         76 VHNAGVA   82 (227)
T ss_pred             EECCCcC
Confidence            9999864

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.81  E-value=0.016  Score=54.73  Aligned_cols=34  Identities=26%  Similarity=0.240  Sum_probs=31.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..+.|+||+|.+|..+|..|+..|.  +|+++++++
T Consensus        54 ~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~   87 (320)
T PLN02780         54 SWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNP   87 (320)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCH
Confidence            5899999999999999999999998  899999976

>PRK09242 tropinone reductase; Provisional

Probab=96.81  E-value=0.021  Score=51.32  Aligned_cols=77  Identities=18%  Similarity=0.187  Sum_probs=48.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC----------HHHHhC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ----------LEDALT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d----------~~~al~  113 (305)
                      +++.|+||+|.+|..++..|+..|.  +|++++++.  ......++.......++..+.. -.+          ..+.+.
T Consensus        10 k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   87 (257)
T PRK09242         10 QTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD   87 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4899999999999999999999998  899999865  2222233332211112222111 011          122345


Q ss_pred             CCCEEEEcCCCC
Q 021932          114 GMDIVIIPAGVP  125 (305)
Q Consensus       114 ~aDiVIi~ag~~  125 (305)
                      ..|++|.++|..
T Consensus        88 ~id~li~~ag~~   99 (257)
T PRK09242         88 GLHILVNNAGGN   99 (257)
T ss_pred             CCCEEEECCCCC
Confidence            689999999863

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.014  Score=52.84  Aligned_cols=35  Identities=23%  Similarity=0.207  Sum_probs=31.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++.
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDA   40 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999998  999999875

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=96.81  E-value=0.034  Score=57.98  Aligned_cols=36  Identities=28%  Similarity=0.246  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..++|.|+||+|.+|..++..|++.|.  +|+++|++.
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~  448 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNL  448 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCH
Confidence            346899999999999999999999998  999999875

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.032  Score=50.32  Aligned_cols=116  Identities=15%  Similarity=0.146  Sum_probs=65.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCCHH----------HHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQLE----------DAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d~~----------~al  112 (305)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.++++  +.....++.......++..+. .-+|.+          +.+
T Consensus         8 ~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          8 GRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999998  899999875  222222333221111222211 112221          123


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~N----~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ...|++|.++|......   .+.   ...+..|    +...+.+.+.+++.. .+.|+++|.
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS  146 (265)
T PRK07062         86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA-AASIVCVNS  146 (265)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEecc
Confidence            46799999998642111   111   1223333    344566666666543 345555543

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.79  E-value=0.024  Score=51.04  Aligned_cols=116  Identities=16%  Similarity=0.219  Sum_probs=65.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe-cCCC---HHHH-------hC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a-------l~  113 (305)
                      +.+.+.|+|++|.+|..++..|+..|.  +|+++|..+......++....  ..+..+. .-+|   .++.       +.
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFG   84 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            345899999999999999999999998  888888754222222222111  1122111 1112   2222       23


Q ss_pred             CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~----~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..|++|.++|.....   ..+   -.+.+..|+...-    .+.+.+.+.++.+.++++|.
T Consensus        85 ~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS  145 (253)
T PRK08993         85 HIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS  145 (253)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence            689999999864311   111   2334556655444    44444444444566666654

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=96.79  E-value=0.0089  Score=55.22  Aligned_cols=97  Identities=16%  Similarity=0.235  Sum_probs=65.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~-~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++||++||+ |++|+.++..|...+ + ..+|...|.++.+.  .++.... ...  .   +++..++...+|+||++. 
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~--~~l~~~~-g~~--~---~~~~~~~~~~advv~Lav-   70 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKR--AALAAEY-GVV--T---TTDNQEAVEEADVVFLAV-   70 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHH--HHHHHHc-CCc--c---cCcHHHHHhhCCEEEEEe-
Confidence            469999999 999999999999888 3 36888888765221  1233221 111  1   235568889999999986 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                         ||            ..+.+++++++...++-+||-+.-.+.
T Consensus        71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~   99 (266)
T COG0345          71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS   99 (266)
T ss_pred             ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence               44            346677777776445666766655554

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.79  E-value=0.0069  Score=60.36  Aligned_cols=101  Identities=14%  Similarity=0.184  Sum_probs=61.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc-cCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~-~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      +|+|||. |.+|.++|..|+..|+  +|.++|+++.+  +.++... .....+.......++.+.++++|+||++..   
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~--~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~---   72 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEK--TDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVK---   72 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHH--HHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECC---
Confidence            4899998 9999999999999998  99999987522  1222221 001112222111123334567999999852   


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC--CCCc
Q 021932          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN--PVNS  168 (305)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN--Pvd~  168 (305)
                       ++           +.+.++++.+..+- ++.+||-.+|  |.+.
T Consensus        73 -~~-----------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t  105 (467)
T TIGR00873        73 -AG-----------APVDAVINQLLPLLEKGDIIIDGGNSHYPDT  105 (467)
T ss_pred             -Cc-----------HHHHHHHHHHHhhCCCCCEEEECCCcCHHHH
Confidence             11           23444555665554 6778888876  4443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.022  Score=51.78  Aligned_cols=112  Identities=19%  Similarity=0.172  Sum_probs=63.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecCCC----------HHHHh
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQ----------LEDAL  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d----------~~~al  112 (305)
                      +.++|.|+||+|.+|..++..|+..|.  .|++.++++.  .....++...    ...... -+|          ..+.+
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~D-~~~~~~~~~~~~~~~~~~   76 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLV----VGGPLD-VTDPASFAAFLDAVEADL   76 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccc----eEEEcc-CCCHHHHHHHHHHHHHHc
Confidence            345899999999999999999999998  8999998652  1111222111    010000 011          11223


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      .+.|++|.++|......   .+   -...+..|+.    +.+.+.+.+.+.+ .+.|+++|.
T Consensus        77 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS  137 (273)
T PRK07825         77 GPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG-RGHVVNVAS  137 (273)
T ss_pred             CCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEcC
Confidence            57899999998643211   11   1234555655    4444555555443 345665653

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=96.78  E-value=0.035  Score=50.23  Aligned_cols=118  Identities=16%  Similarity=0.198  Sum_probs=65.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---HH-------
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---ED-------  110 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~~-------  110 (305)
                      .+.+++.|+|++|.+|..++..|+..|.  ++++.|.++.  .....++...  ..++..+. .-+|.   ++       
T Consensus         8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~   83 (265)
T PRK07097          8 LKGKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYREL--GIEAHGYVCDVTDEDGVQAMVSQIEK   83 (265)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            3445899999999999999999999998  8999987652  2222223221  11222211 11122   11       


Q ss_pred             HhCCCCEEEEcCCCCCC-C-CCc----hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 021932          111 ALTGMDIVIIPAGVPRK-P-GMT----RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPV  166 (305)
Q Consensus       111 al~~aDiVIi~ag~~~~-~-g~~----r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tNPv  166 (305)
                      .+...|++|.++|.... + ...    -...+..|...    .+.+.+.+.+. ..+.|++++...
T Consensus        84 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~  148 (265)
T PRK07097         84 EVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKK-GHGKIINICSMM  148 (265)
T ss_pred             hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCcc
Confidence            22457999999986421 1 111    12234445443    33444444433 345666666543

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.038  Score=49.29  Aligned_cols=114  Identities=19%  Similarity=0.160  Sum_probs=64.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCC-ceEEE-EecCCCHHHHhCC----CCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTN-AVVRG-FLGQQQLEDALTG----MDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~-~~v~~-~~~t~d~~~al~~----aDiVIi  120 (305)
                      .++.|+||+|.+|..++..|+..|.  +|+++|+++...  .++...... ..+.. .....+.+++++.    .|.+|+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~   77 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVL--DELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF   77 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence            4799999999999999999999998  899999875211  111111000 11111 1111123333333    478888


Q ss_pred             cCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          121 PAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       121 ~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                      .+|......   .+.   .+.+..|......+.+.+...- ....+++++.
T Consensus        78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS  128 (240)
T PRK06101         78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS  128 (240)
T ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence            887432111   122   2456778877777777766542 3344555543

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.02  Score=51.54  Aligned_cols=103  Identities=22%  Similarity=0.269  Sum_probs=59.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEec-CCC---HHHH-------hC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------LT  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-------l~  113 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++++++. .....++...  ..++..+.. -++   .++.       +.
T Consensus         6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELCGR--GHRCTAVVADVRDPASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            45899999999999999999999998  8999998651 1122222211  112222111 112   2222       23


Q ss_pred             CCCEEEEcCCCCCCC---CC---chhhHHHhhHHHHHHHHHHHHH
Q 021932          114 GMDIVIIPAGVPRKP---GM---TRDDLFNINAGIVKTLCEGIAK  152 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~---~r~d~~~~N~~i~~~i~~~I~~  152 (305)
                      ..|++|.++|.....   ..   ...+.+..|+.....+.+.+.+
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~  126 (263)
T PRK08226         82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLP  126 (263)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            579999999863211   11   1223456676655555555443

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.018  Score=51.63  Aligned_cols=114  Identities=18%  Similarity=0.211  Sum_probs=64.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHH-------Hh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LED-------AL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~-------al  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|++.+++..  +....++.+..  .++..+. .-+|   .++       .+
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999998  8999998752  22222333211  1222211 1112   111       23


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ...|++|.++|.....   ..+.   ...+..|+..    .+.+.+.+.+....+.+++++
T Consensus        85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s  145 (253)
T PRK05867         85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA  145 (253)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            4789999999864321   1111   2234555544    444444444443345555554

>PRK07577 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.011  Score=52.05  Aligned_cols=34  Identities=24%  Similarity=0.137  Sum_probs=31.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ++|.|+||+|.+|..++..|+..|.  +|++++++.
T Consensus         4 k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~   37 (234)
T PRK07577          4 RTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA   37 (234)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            4899999999999999999999997  899999865

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=96.76  E-value=0.011  Score=61.21  Aligned_cols=90  Identities=19%  Similarity=0.185  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHh--CCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL--TGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al--~~aDiVIi~a  122 (305)
                      +.|||.|+||+|++|++++..|...++  ++... .       .|+.+..            .+...+  .+.|+||.+|
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~-------~~l~d~~------------~v~~~i~~~~pd~Vih~A  436 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-K-------GRLEDRS------------SLLADIRNVKPTHVFNAA  436 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCC--eEEee-c-------cccccHH------------HHHHHHHhhCCCEEEECC
Confidence            458999999999999999999988886  55211 1       0111110            011222  2689999999


Q ss_pred             CCCCCC--C---CchhhHHHhhHHHHHHHHHHHHHhCCC
Q 021932          123 GVPRKP--G---MTRDDLFNINAGIVKTLCEGIAKCCPK  156 (305)
Q Consensus       123 g~~~~~--g---~~r~d~~~~N~~i~~~i~~~I~~~~p~  156 (305)
                      +....+  +   ....+.+..|+.....+++.+.+.+..
T Consensus       437 a~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~  475 (668)
T PLN02260        437 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLL  475 (668)
T ss_pred             cccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCe
Confidence            864321  1   234567788999999999999998653

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.76  E-value=0.0053  Score=51.10  Aligned_cols=72  Identities=21%  Similarity=0.315  Sum_probs=48.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .++|+|+|+ |.+|..++..|...+ ..++.++|.+...  ..+.++...  .....    ..+.++.++++|+||.+.+
T Consensus        19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~Dvvi~~~~   90 (155)
T cd01065          19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGEL--GIAIA----YLDLEELLAEADLIINTTP   90 (155)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhc--cccee----ecchhhccccCCEEEeCcC
Confidence            469999998 999999999998876 3489999987522  222222211  00111    1245566899999999976


Q ss_pred             CC
Q 021932          124 VP  125 (305)
Q Consensus       124 ~~  125 (305)
                      ..
T Consensus        91 ~~   92 (155)
T cd01065          91 VG   92 (155)
T ss_pred             CC
Confidence            54

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=96.76  E-value=0.0089  Score=55.59  Aligned_cols=88  Identities=23%  Similarity=0.297  Sum_probs=64.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC--CCCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~  124 (305)
                      |||.|+|++|++|+.+...|. .+.  +++-.|..+     +|+.+...            ..+.++  .-|+||.+|.+
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~~------------v~~~i~~~~PDvVIn~AAy   60 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPDA------------VLEVIRETRPDVVINAAAY   60 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChHH------------HHHHHHhhCCCEEEECccc
Confidence            579999999999999998886 445  888887654     55555431            234444  46999999986


Q ss_pred             CC--CCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 021932          125 PR--KPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (305)
Q Consensus       125 ~~--~~g~~r~d~~~~N~~i~~~i~~~I~~~~  154 (305)
                      ..  +...++..-+..|+.....+++...+++
T Consensus        61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g   92 (281)
T COG1091          61 TAVDKAESEPELAFAVNATGAENLARAAAEVG   92 (281)
T ss_pred             cccccccCCHHHHHHhHHHHHHHHHHHHHHhC
Confidence            43  2223456667889999999999999886

>TIGR02415 23BDH acetoin reductases

Probab=96.75  E-value=0.016  Score=51.75  Aligned_cols=112  Identities=18%  Similarity=0.259  Sum_probs=63.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCCH---HHH-------hCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQL---EDA-------LTG  114 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d~---~~a-------l~~  114 (305)
                      ++.|+|++|.+|..++..|++.|.  +|++++.++.  .....++...  ...+..+.. -+|.   +++       +..
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~   77 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQA--GGKAVAYKLDVSDKDQVFSAIDQAAEKFGG   77 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999999997  8999998652  2122233321  112222111 1121   112       235


Q ss_pred             CCEEEEcCCCCCC-C--CCchh---hHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932          115 MDIVIIPAGVPRK-P--GMTRD---DLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       115 aDiVIi~ag~~~~-~--g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .|++|.++|.... +  +.+..   ..+..|+.    +++.+.+.+.+....+.++++|
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s  136 (254)
T TIGR02415        78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA  136 (254)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            7999999986321 1  22222   23455544    3445555665555445665554

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.75  E-value=0.0087  Score=57.80  Aligned_cols=71  Identities=21%  Similarity=0.183  Sum_probs=44.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~-~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +||+|+||+|.||.-+...++.++ + ..+++++......+...++...    ...... ..+ .+.++++|+||+++|
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~----~~~v~~-~~~-~~~~~~~Divf~a~~   74 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK----EGTLQD-AFD-IDALKKLDIIITCQG   74 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC----cceEEe-cCC-hhHhcCCCEEEECCC
Confidence            699999999999999998555554 4 4568887664332332223221    112121 123 256899999999875

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.74  E-value=0.035  Score=49.99  Aligned_cols=35  Identities=20%  Similarity=0.189  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .++|.|+||+|.+|..++..|+..|.  .|++++.++
T Consensus        15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~   49 (258)
T PRK06935         15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGT   49 (258)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            45899999999999999999999998  899998763

>PLN02494 adenosylhomocysteinase

Probab=96.74  E-value=0.014  Score=57.99  Aligned_cols=131  Identities=18%  Similarity=0.143  Sum_probs=81.0

Q ss_pred             CcchhhHHHHHHHh--hhCCCcccc--------------ccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHH
Q 021932            4 PTSGANQRIARIAA--HLHPPTLQI--------------EGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK   67 (305)
Q Consensus         4 ~~~~~~~~~~~~~~--~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~   67 (305)
                      -|.+--+|+.+++.  .|.-|-+-+              ++++ .|..+.-.-.-.....+|+|+|. |.+|..+|..+.
T Consensus       197 eTttGv~Rl~~m~~~g~L~~Pvi~vnds~~K~~fDn~yGtgqS-~~d~i~r~t~i~LaGKtVvViGy-G~IGr~vA~~ak  274 (477)
T PLN02494        197 ETTTGVKRLYQMQKNGTLLFPAINVNDSVTKSKFDNLYGCRHS-LPDGLMRATDVMIAGKVAVICGY-GDVGKGCAAAMK  274 (477)
T ss_pred             cccHHHHHHHHHHHCCCCCCCEEEEcChhhhhhhhcccccccc-HHHHHHHhcCCccCCCEEEEECC-CHHHHHHHHHHH
Confidence            35666788888754  587777632              3344 23322211111133469999999 999999999998


Q ss_pred             hCCCCcEEEEEeCCCCc-hhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHH
Q 021932           68 INPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTL  146 (305)
Q Consensus        68 ~~~~~~el~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i  146 (305)
                      ..|.  +|+.+|+++.+ ..+.  .+.  +.   ..    +++++++.+|+||.+.|..               .++.  
T Consensus       275 a~Ga--~VIV~e~dp~r~~eA~--~~G--~~---vv----~leEal~~ADVVI~tTGt~---------------~vI~--  324 (477)
T PLN02494        275 AAGA--RVIVTEIDPICALQAL--MEG--YQ---VL----TLEDVVSEADIFVTTTGNK---------------DIIM--  324 (477)
T ss_pred             HCCC--EEEEEeCCchhhHHHH--hcC--Ce---ec----cHHHHHhhCCEEEECCCCc---------------cchH--
Confidence            7887  89999987622 1222  111  11   11    3467899999999876532               1110  


Q ss_pred             HHHHHHhCCCcEEEEecCCC
Q 021932          147 CEGIAKCCPKAIVNLISNPV  166 (305)
Q Consensus       147 ~~~I~~~~p~aiviv~tNPv  166 (305)
                      .+.+....+.+++++++-+-
T Consensus       325 ~e~L~~MK~GAiLiNvGr~~  344 (477)
T PLN02494        325 VDHMRKMKNNAIVCNIGHFD  344 (477)
T ss_pred             HHHHhcCCCCCEEEEcCCCC
Confidence            23344445889999998753

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.73  E-value=0.005  Score=58.98  Aligned_cols=74  Identities=24%  Similarity=0.463  Sum_probs=50.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~-~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      +.+.+||+|+||+|.+|.-+..+|..++ + ..+|.++......|+...+..    ..+....  .|. +.++++|+||+
T Consensus         2 ~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~----~~l~v~~--~~~-~~~~~~Divf~   74 (347)
T PRK06728          2 SEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKG----REIIIQE--AKI-NSFEGVDIAFF   74 (347)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCC----cceEEEe--CCH-HHhcCCCEEEE
Confidence            3455799999999999999999998654 3 346888876554455443322    1233221  233 56799999999


Q ss_pred             cCC
Q 021932          121 PAG  123 (305)
Q Consensus       121 ~ag  123 (305)
                      +++
T Consensus        75 a~~   77 (347)
T PRK06728         75 SAG   77 (347)
T ss_pred             CCC
Confidence            875

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=96.73  E-value=0.015  Score=54.83  Aligned_cols=109  Identities=20%  Similarity=0.139  Sum_probs=70.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---C--chhhhhhhcccCCceEEEEecC-CC---HHHHh--CC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---T--PGVTADISHMDTNAVVRGFLGQ-QQ---LEDAL--TG  114 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~--~g~~~DL~~~~~~~~v~~~~~t-~d---~~~al--~~  114 (305)
                      .++|.|+||+|++|++.+..|+..|+  +++++|.-.   +  ...+..+.+.  ...+.+..+. .|   +++.|  ..
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D~~~L~kvF~~~~   77 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLNDAEALEKLFSEVK   77 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCCHHHHHHHHhhcC
Confidence            35899999999999999999999999  999999754   1  1222333332  1233332221 12   22222  24


Q ss_pred             CCEEEEcCCCCC-CCC-CchhhHHHhhHHHHHHHHHHHHHhCCCcE
Q 021932          115 MDIVIIPAGVPR-KPG-MTRDDLFNINAGIVKTLCEGIAKCCPKAI  158 (305)
Q Consensus       115 aDiVIi~ag~~~-~~g-~~r~d~~~~N~~i~~~i~~~I~~~~p~ai  158 (305)
                      -|-|+..|+... .+. +.+..+...|+-....+.+.+++++-..+
T Consensus        78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~  123 (343)
T KOG1371|consen   78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKAL  123 (343)
T ss_pred             CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceE
Confidence            677888776432 111 23466777899999999999999983333

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.73  E-value=0.0073  Score=57.26  Aligned_cols=73  Identities=27%  Similarity=0.350  Sum_probs=47.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCchhh-hhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVT-ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~~g~~-~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++||+|+||+|.||+.+...|.... .++++.++=..+..|+. .+......  .+..  ...|. .+++++|+|++++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~--~~~~~-~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPE--DAADE-FVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCcc--ccccc-cccccCCEEEEeCc
Confidence            3599999999999999999999854 46678887665544443 33332210  0110  00132 45779999999986

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.72  E-value=0.019  Score=51.60  Aligned_cols=113  Identities=12%  Similarity=0.149  Sum_probs=62.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHH-------hCCCCE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDA-------LTGMDI  117 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~a-------l~~aDi  117 (305)
                      .+++.|+||+|.+|..++..|++.|.  +|++.+.... ....++.+... ..+.. .....+.+++       +...|+
T Consensus         7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06463          7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKGV-FTIKCDVGNRDQVKKSKEVVEKEFGRVDV   82 (255)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCCC-eEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            45899999999999999999999997  7888765431 11112221110 00110 0001112222       246799


Q ss_pred             EEEcCCCCCCC---CCch---hhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932          118 VIIPAGVPRKP---GMTR---DDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       118 VIi~ag~~~~~---g~~r---~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +|.++|.....   ..+.   ...+..|+..    .+.+.+.+.+.. .+.|+++|
T Consensus        83 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~is  137 (255)
T PRK06463         83 LVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK-NGAIVNIA  137 (255)
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEc
Confidence            99999874311   1122   2334556554    566666665443 34555554

>PLN02712 arogenate dehydrogenase

Probab=96.72  E-value=0.011  Score=61.59  Aligned_cols=66  Identities=20%  Similarity=0.305  Sum_probs=46.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC-CCCEEEEcC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIPA  122 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~-~aDiVIi~a  122 (305)
                      .+++||+|||. |.+|..++..|...|+  +|+.+|.+.....+.++   .    +...   +++++.++ ++|+||++.
T Consensus       367 ~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~---G----v~~~---~~~~el~~~~aDvVILav  433 (667)
T PLN02712        367 GSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL---G----VSYF---SDADDLCEEHPEVILLCT  433 (667)
T ss_pred             CCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc---C----CeEe---CCHHHHHhcCCCEEEECC
Confidence            45679999998 9999999999998887  89999986421111111   1    1121   35556565 599999985

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.70  E-value=0.028  Score=50.30  Aligned_cols=35  Identities=26%  Similarity=0.268  Sum_probs=31.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .++|.|+||+|.+|..++..|+..|.  .|+++|++.
T Consensus         8 ~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~   42 (252)
T PRK07035          8 GKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKL   42 (252)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999997  899999865

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.70  E-value=0.0066  Score=57.81  Aligned_cols=64  Identities=28%  Similarity=0.387  Sum_probs=45.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ..+||+|||. |.+|+.+|..|+. .|.  +|..+|......    ...     .+..   ..++++++++||+|+++..
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~----~~~-----~~~~---~~~l~ell~~aDvIvl~lP  209 (332)
T PRK08605        145 KDLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFPNAK----AAT-----YVDY---KDTIEEAVEGADIVTLHMP  209 (332)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCccHh----HHh-----hccc---cCCHHHHHHhCCEEEEeCC
Confidence            4469999999 9999999998843 355  899999754211    111     0111   2367889999999999864

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.017  Score=54.76  Aligned_cols=114  Identities=18%  Similarity=0.092  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---HHHH-------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a-------  111 (305)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++++++  +.....++....  ..+..+. .-+|   .++.       
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~   81 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASF   81 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999998  899999876  222222333221  1222110 1112   2222       


Q ss_pred             hCCCCEEEEcCCCCCCC--C-Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932          112 LTGMDIVIIPAGVPRKP--G-MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~--g-~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +...|++|.++|.....  . .+   -.+.+..|.-.    .+.+.+.+.+.. .+.+++++
T Consensus        82 ~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~is  142 (330)
T PRK06139         82 GGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMI  142 (330)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEc
Confidence            24679999999864221  1 11   12345555443    344444455443 35566554

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.0091  Score=53.01  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=30.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ||+.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~   34 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR   34 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4899999999999999999999988  899999865

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.68  E-value=0.0054  Score=56.92  Aligned_cols=106  Identities=21%  Similarity=0.267  Sum_probs=71.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhC----CC-----CcEEEEEeCCCC-chhhhhhhccc--CCceEEEEecCCCHHHHhC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKIN----PL-----VSVLHLYDVVNT-PGVTADISHMD--TNAVVRGFLGQQQLEDALT  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~----~~-----~~el~L~D~~~~-~g~~~DL~~~~--~~~~v~~~~~t~d~~~al~  113 (305)
                      ..||+|.|| |.-|..++..|...    |+     ...+.++|.+.+ .....||.+..  ....... ....+++++++
T Consensus        25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~-~~~~~L~e~i~  102 (279)
T cd05312          25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEE-KEGKSLLEVVK  102 (279)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCc-ccCCCHHHHHH
Confidence            358999999 99999999877664    65     268999998761 11111222211  0000000 01247899999


Q ss_pred             --CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          114 --GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       114 --~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                        ++|+.|=+.+.+   |           -+.+++++.|.+++++.+|+-.|||..
T Consensus       103 ~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~  144 (279)
T cd05312         103 AVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSNERPIIFALSNPTS  144 (279)
T ss_pred             hcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence              999988765533   2           235678899999999999999999986

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PLN03139 formate dehydrogenase; Provisional

Probab=96.68  E-value=0.018  Score=56.00  Aligned_cols=101  Identities=21%  Similarity=0.221  Sum_probs=64.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +...++|+|||. |.+|..+|..|...|.  +|+.+|.......   .....   .+..   ..++++.+++||+|+++.
T Consensus       196 ~L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~---~~~~~---g~~~---~~~l~ell~~sDvV~l~l  263 (386)
T PLN03139        196 DLEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPE---LEKET---GAKF---EEDLDAMLPKCDVVVINT  263 (386)
T ss_pred             CCCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchh---hHhhc---Ccee---cCCHHHHHhhCCEEEEeC
Confidence            345679999998 9999999999987777  8999997642111   11110   1111   136788999999999985


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      ...  + +        +-.++.  .+.+....|.+++|+++  ..+|.
T Consensus       264 Plt--~-~--------T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe  298 (386)
T PLN03139        264 PLT--E-K--------TRGMFN--KERIAKMKKGVLIVNNARGAIMDT  298 (386)
T ss_pred             CCC--H-H--------HHHHhC--HHHHhhCCCCeEEEECCCCchhhH
Confidence            321  1 1        112221  23444455889999886  44553

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.68  E-value=0.013  Score=56.21  Aligned_cols=74  Identities=23%  Similarity=0.243  Sum_probs=45.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCCchhhhhhhcc--cCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHM--DTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~-L~D~~~~~g~~~DL~~~--~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +||+|+||+|.+|..++..|...+.. +++ +++..+..|+...-.+.  .....+.. . ..+.++.++++|+||++.+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~DvVf~alP   77 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNL-E-PIDEEEIAEDADVVFLALP   77 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCcee-e-cCCHHHhhcCCCEEEECCC
Confidence            58999999999999999999877654 666 66765433332211111  10011121 1 1244444469999999864

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK09134 short chain dehydrogenase; Provisional

Probab=96.67  E-value=0.016  Score=52.17  Aligned_cols=114  Identities=14%  Similarity=0.154  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEe-cCCC---HHHHh-----
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-----  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al-----  112 (305)
                      +.+++.|+||+|.+|.+++..|+..|.  .+++++...   ......++.+.  ..++..+. .-+|   ..+++     
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~   83 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRAL--GRRAVALQADLADEAEVRALVARASA   83 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999887  787776543   11111222221  12222221 1122   22222     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC---CCcEEEEe
Q 021932          113 --TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLI  162 (305)
Q Consensus       113 --~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~~---p~aiviv~  162 (305)
                        ...|+||.++|.....   ..+   -...+..|+.....+.+.+.++.   ..+.++++
T Consensus        84 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~  144 (258)
T PRK09134         84 ALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNM  144 (258)
T ss_pred             HcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence              3479999999864221   112   23346667665555555555443   23455544

>PRK12743 oxidoreductase; Provisional

Probab=96.67  E-value=0.11  Score=46.60  Aligned_cols=114  Identities=14%  Similarity=0.137  Sum_probs=62.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C--chhhhhhhcccCCceEEEEe-cCCCH---HH-------Hh
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTNAVVRGFL-GQQQL---ED-------AL  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~~-------al  112 (305)
                      ++|.|+||+|.+|..++..|+..|.  +|++++... .  .....++....  ..+..+. .-++.   +.       .+
T Consensus         3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRL   78 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4899999999999999999999998  888876433 1  11122332211  1222211 11222   11       12


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~----I~~~~p~aiviv~tN  164 (305)
                      ...|++|.++|......   .+   -.+.+..|......+.+.    +.+.+..+.++++|.
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS  140 (256)
T PRK12743         79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS  140 (256)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence            45799999998643211   11   123455565544444444    433333456666654

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.66  E-value=0.007  Score=57.68  Aligned_cols=71  Identities=24%  Similarity=0.421  Sum_probs=47.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++||+|+||+|++|..++..|..+++ ..||..+-.....|+..++..    ..+.... . + ..+++++|+||++.|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~d-~-~-~~~~~~vDvVf~A~g   72 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVED-L-T-TFDFSGVDIALFSAG   72 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEee-C-C-HHHHcCCCEEEECCC
Confidence            36999999999999999999988654 247777765443344333321    2233221 1 2 245789999999875

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.66  E-value=0.029  Score=50.40  Aligned_cols=102  Identities=15%  Similarity=0.128  Sum_probs=59.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEec-CCC---HHHHh-------C
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------T  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------~  113 (305)
                      .+++.|+||+|.+|..++..|++.|.  ++++++.++. .....++....  .++..+.. -++   ++..+       .
T Consensus         7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK08628          7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKFG   82 (258)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            45899999999999999999999997  8888887662 22222332211  12222111 112   22223       3


Q ss_pred             CCCEEEEcCCCCCCCCC-----chhhHHHhhHHHHHHHHHHHH
Q 021932          114 GMDIVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIA  151 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g~-----~r~d~~~~N~~i~~~i~~~I~  151 (305)
                      ..|+||.++|.......     +-.+.+..|+.....+.+...
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~  125 (258)
T PRK08628         83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCL  125 (258)
T ss_pred             CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHH
Confidence            57999999986432211     122345566665555555444

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.66  E-value=0.018  Score=50.98  Aligned_cols=35  Identities=23%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .++|.|+||+|.+|+.++..|++.|.  +|+++++++
T Consensus         5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~   39 (238)
T PRK05786          5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE   39 (238)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999998  999999865

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.66  E-value=0.044  Score=49.15  Aligned_cols=114  Identities=14%  Similarity=0.154  Sum_probs=63.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---HHH-------h
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---EDA-------L  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~e-l~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~~a-------l  112 (305)
                      ++|.|+||+|.+|..++..|+..|.  + |+++|++..  .....++...  ...+..+. .-++.   .+.       +
T Consensus         7 k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (260)
T PRK06198          7 KVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADEAF   82 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999998887  6 999998652  1112223211  12222111 11221   122       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIVKTL----CEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~~~i----~~~I~~~~p~aiviv~tN  164 (305)
                      .+.|++|.++|.....   ..+.   ...+..|+.-...+    .+.+.+....+.++++|.
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss  144 (260)
T PRK06198         83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS  144 (260)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence            3689999999865321   1122   22345555444444    444444433455555553

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.65  E-value=0.13  Score=46.80  Aligned_cols=36  Identities=17%  Similarity=0.222  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~   44 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQ   44 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345899999999999999999999998  899999865

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.65  E-value=0.0065  Score=52.97  Aligned_cols=75  Identities=20%  Similarity=0.213  Sum_probs=48.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe--cCCCHHHHhCCCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL--GQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi~  121 (305)
                      .+|+.|+|++|.+|..++..|...+.  +|.+++++..  .....++.+.. ...+....  ...+..++++++|+||.+
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~a  104 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFAA  104 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence            45899999889999999999988876  9999988652  22222232111 12222211  112335788999998887


Q ss_pred             CC
Q 021932          122 AG  123 (305)
Q Consensus       122 ag  123 (305)
                      ..
T Consensus       105 t~  106 (194)
T cd01078         105 GA  106 (194)
T ss_pred             CC
Confidence            54

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=96.65  E-value=0.033  Score=49.28  Aligned_cols=114  Identities=21%  Similarity=0.140  Sum_probs=63.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc--cCCceEEEEec-CCC---HHHH-------hC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTNAVVRGFLG-QQQ---LEDA-------LT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~--~~~~~v~~~~~-t~d---~~~a-------l~  113 (305)
                      +++.|+|++|.+|..++..|+..|.  .|++.|++.. ....++...  ....++..+.. -.|   .+++       +.
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~   79 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG   79 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4899999999999999999999887  8999998742 111111110  01112222211 112   2122       23


Q ss_pred             CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHH----HHHHHHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTL----CEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i----~~~I~~~~p~aiviv~tN  164 (305)
                      ..|++|.++|.....   ..+   -...+..|+.....+    .+.+.+.. .+.++++|.
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~iss  139 (245)
T PRK12824         80 PVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQG-YGRIINISS  139 (245)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CeEEEEECC
Confidence            589999999864211   111   123345566554444    44444443 456666654

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.64  E-value=0.013  Score=50.61  Aligned_cols=95  Identities=27%  Similarity=0.357  Sum_probs=59.6

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ....++|+|+|. |.+|+.+|..+..-|.  +|+.+|.......  ...+.    .+..    .++++.++.||+|+++.
T Consensus        33 ~l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~----~~~~----~~l~ell~~aDiv~~~~   99 (178)
T PF02826_consen   33 ELRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEF----GVEY----VSLDELLAQADIVSLHL   99 (178)
T ss_dssp             -STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHT----TEEE----SSHHHHHHH-SEEEE-S
T ss_pred             ccCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hcccc----ccee----eehhhhcchhhhhhhhh
Confidence            445569999998 9999999999998888  9999998652111  11111    1121    25788999999999986


Q ss_pred             CC-CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          123 GV-PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       123 g~-~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      .. +...++     +  |.       +.+.+..+++++||++-
T Consensus       100 plt~~T~~l-----i--~~-------~~l~~mk~ga~lvN~aR  128 (178)
T PF02826_consen  100 PLTPETRGL-----I--NA-------EFLAKMKPGAVLVNVAR  128 (178)
T ss_dssp             SSSTTTTTS-----B--SH-------HHHHTSTTTEEEEESSS
T ss_pred             cccccccee-----e--ee-------eeeeccccceEEEeccc
Confidence            42 222222     1  21       22344457889999863

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK05855 short chain dehydrogenase; Validated

Probab=96.64  E-value=0.015  Score=58.21  Aligned_cols=116  Identities=18%  Similarity=0.168  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCCH---HHH-------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQL---EDA-------  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d~---~~a-------  111 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|++++++..  ...+.++....  ..+..+.. -+|.   ++.       
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~  389 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRAE  389 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            446899999999999999999999998  8999998762  22222332211  12221111 1122   111       


Q ss_pred             hCCCCEEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +...|++|.+||.....   ..+.   ...+..|+.    ..+.+.+.+.+.+..+.|+++|.
T Consensus       390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS  452 (582)
T PRK05855        390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVAS  452 (582)
T ss_pred             cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            23579999999975321   1111   233455643    44455555666555566666654

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.64  E-value=0.018  Score=51.19  Aligned_cols=36  Identities=22%  Similarity=0.347  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +..++.|+|++|.+|..++..|+..|.  .|+++|.++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~   39 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ   39 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345899999999999999999999987  899999875

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.63  E-value=0.018  Score=50.96  Aligned_cols=36  Identities=25%  Similarity=0.447  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +..||.|+|+ |.+|+.++..|+..|. .+|.++|.+.
T Consensus        20 ~~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~   55 (202)
T TIGR02356        20 LNSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH   55 (202)
T ss_pred             cCCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence            4458999999 9999999999999997 5999999873

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.62  E-value=0.02  Score=56.03  Aligned_cols=131  Identities=21%  Similarity=0.180  Sum_probs=78.4

Q ss_pred             CcchhhHHHHHHH--hhhCCCcccc--------------ccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHH
Q 021932            4 PTSGANQRIARIA--AHLHPPTLQI--------------EGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMK   67 (305)
Q Consensus         4 ~~~~~~~~~~~~~--~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~   67 (305)
                      -|.+--+|+.+++  +.|.-|-+-+              ++++ .|..+.-...-.....+|+|+|. |.+|..++..+.
T Consensus       138 eTttGv~rl~~~~~~~~L~~Pvi~vnds~~K~~fDn~yg~g~s-~~~~i~r~t~~~l~Gk~VvViG~-G~IG~~vA~~ak  215 (406)
T TIGR00936       138 ETTTGVIRLRAMEAEGVLKFPAINVNDAYTKSLFDNRYGTGQS-TIDGILRATNLLIAGKTVVVAGY-GWCGKGIAMRAR  215 (406)
T ss_pred             cchHHHHHHHHHHHcCCCCCcEEEecchhhchhhhcccccchh-HHHHHHHhcCCCCCcCEEEEECC-CHHHHHHHHHHh
Confidence            3566678888876  5577776622              3444 33322211101234559999999 999999999998


Q ss_pred             hCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHH
Q 021932           68 INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLC  147 (305)
Q Consensus        68 ~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~  147 (305)
                      ..|.  +|+.+|+++.+.... ..+.  .   ..    .+.+++++++|+||.+.|.               ..++..  
T Consensus       216 ~~Ga--~ViV~d~dp~r~~~A-~~~G--~---~v----~~leeal~~aDVVItaTG~---------------~~vI~~--  266 (406)
T TIGR00936       216 GMGA--RVIVTEVDPIRALEA-AMDG--F---RV----MTMEEAAKIGDIFITATGN---------------KDVIRG--  266 (406)
T ss_pred             hCcC--EEEEEeCChhhHHHH-HhcC--C---Ee----CCHHHHHhcCCEEEECCCC---------------HHHHHH--
Confidence            8887  899999876321111 1111  1   11    1245789999999887642               122221  


Q ss_pred             HHHHHhCCCcEEEEecCC
Q 021932          148 EGIAKCCPKAIVNLISNP  165 (305)
Q Consensus       148 ~~I~~~~p~aiviv~tNP  165 (305)
                      +.+....+.+++++++-+
T Consensus       267 ~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       267 EHFENMKDGAIVANIGHF  284 (406)
T ss_pred             HHHhcCCCCcEEEEECCC
Confidence            122333467888888754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.014  Score=51.81  Aligned_cols=115  Identities=19%  Similarity=0.176  Sum_probs=64.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHh---CCCCEEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDAL---TGMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al---~~aDiVIi  120 (305)
                      +.+++.|+|++|.+|..++..|+..|.  +|++++++...  ..++........+.. .....+.++.+   ...|+||.
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~   83 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAA--LDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVN   83 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEE
Confidence            345899999999999999999999998  89999986521  111211110011111 11011222333   35799999


Q ss_pred             cCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh----CCCcEEEEec
Q 021932          121 PAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC----CPKAIVNLIS  163 (305)
Q Consensus       121 ~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~----~p~aiviv~t  163 (305)
                      ++|.....   ..+   -.+.+..|+.....+.+.+.+.    +..+.++++|
T Consensus        84 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~s  136 (245)
T PRK07060         84 CAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVS  136 (245)
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEc
Confidence            99864321   111   2234456666665555555543    2224566555

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.046  Score=48.89  Aligned_cols=35  Identities=23%  Similarity=0.238  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++
T Consensus         9 ~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~   43 (258)
T PRK06949          9 GKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV   43 (258)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999999988  899999865

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.61  E-value=0.014  Score=54.87  Aligned_cols=86  Identities=23%  Similarity=0.355  Sum_probs=62.6

Q ss_pred             cccCCCC----------CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC
Q 021932           36 MDCRAKG----------GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ  105 (305)
Q Consensus        36 ~~~~~~~----------~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t  105 (305)
                      .+|||.+          +...++|+|||.+|.||..++..|...|.  +|.+++...                       
T Consensus       139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------  193 (301)
T PRK14194        139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------  193 (301)
T ss_pred             CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------
Confidence            5788751          33457999999966999999999999988  888886531                       


Q ss_pred             CCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec-CCC
Q 021932          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPV  166 (305)
Q Consensus       106 ~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t-NPv  166 (305)
                      .++++.++.||+||.+.|.+..-   ..++                 ..|.+++|-++ |++
T Consensus       194 ~~l~e~~~~ADIVIsavg~~~~v---~~~~-----------------ik~GaiVIDvgin~~  235 (301)
T PRK14194        194 TDAKALCRQADIVVAAVGRPRLI---DADW-----------------LKPGAVVIDVGINRI  235 (301)
T ss_pred             CCHHHHHhcCCEEEEecCChhcc---cHhh-----------------ccCCcEEEEeccccc
Confidence            14568889999999998865211   1111                 45888888876 654

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.61  E-value=0.021  Score=51.41  Aligned_cols=36  Identities=31%  Similarity=0.402  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.+++.|+|++|.+|..++..|++.|.  ++++.|++.
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~   42 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRT   42 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            345899999999999999999999998  999999864

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.60  E-value=0.013  Score=54.06  Aligned_cols=69  Identities=13%  Similarity=0.285  Sum_probs=44.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++||+|||. |.+|..++..+...+ -..-+.++|.+...  +.++.... .  ...+   +++++.+.++|+|+++++
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~--a~~~a~~~-~--~~~~---~~~~ell~~~DvVvi~a~   70 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEK--AENLASKT-G--AKAC---LSIDELVEDVDLVVECAS   70 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHH--HHHHHHhc-C--CeeE---CCHHHHhcCCCEEEEcCC
Confidence            369999998 999999998887654 22235578876521  12222211 1  1222   366676799999999974

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.60  E-value=0.049  Score=48.47  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~   81 (305)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.+.+
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~   38 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ   38 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence            345899999999999999999999997  88776543

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.60  E-value=0.01  Score=54.34  Aligned_cols=107  Identities=22%  Similarity=0.329  Sum_probs=71.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCC--Cchhhhhhhccc-----CCceEEEEecCCCHH
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TPGVTADISHMD-----TNAVVRGFLGQQQLE  109 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~----~~~-----~el~L~D~~~--~~g~~~DL~~~~-----~~~~v~~~~~t~d~~  109 (305)
                      ..||.+.|| |.-|..++.+|...    |+-     +.+.|+|.+.  ..+. .||.+..     .......   ..++.
T Consensus        25 d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~~~~~a~~~~~~~~---~~~L~   99 (255)
T PF03949_consen   25 DQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPHKKPFARKTNPEKD---WGSLL   99 (255)
T ss_dssp             G-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHHHHHHHBSSSTTT-----SSHH
T ss_pred             HcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChhhhhhhccCccccc---ccCHH
Confidence            458999999 99999999877765    774     7899999875  1221 2332211     0111111   13789


Q ss_pred             HHhCCC--CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC--ccHH
Q 021932          110 DALTGM--DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVP  171 (305)
Q Consensus       110 ~al~~a--DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd--~lt~  171 (305)
                      |+++++  |+.|=+.+.+   |           -+.+++++.|.+++++.+|+=.|||..  -.++
T Consensus       100 eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p  151 (255)
T PF03949_consen  100 EAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTPKAECTP  151 (255)
T ss_dssp             HHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H
T ss_pred             HHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCCcccCCH
Confidence            999999  9988876643   2           236788999999999999999999988  5664

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.59  E-value=0.061  Score=48.18  Aligned_cols=113  Identities=12%  Similarity=0.097  Sum_probs=64.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHH-------HhC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LED-------ALT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~-------al~  113 (305)
                      +++.|+||+|.+|..++..|+..|.  .|++.|++.  +.....++....  ..+..+.. -+|   .++       .+.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999998  899999875  222222332211  12222211 112   111       124


Q ss_pred             CCCEEEEcCCCCCC-C--CCch---hhHHHhhHHHHHHHHHHH----HHhCCCcEEEEec
Q 021932          114 GMDIVIIPAGVPRK-P--GMTR---DDLFNINAGIVKTLCEGI----AKCCPKAIVNLIS  163 (305)
Q Consensus       114 ~aDiVIi~ag~~~~-~--g~~r---~d~~~~N~~i~~~i~~~I----~~~~p~aiviv~t  163 (305)
                      ..|++|.++|.... +  ..+.   ...+..|+.....+.+.+    .+....+.++++|
T Consensus        78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~is  137 (252)
T PRK07677         78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV  137 (252)
T ss_pred             CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence            67999999885321 1  1222   234555655444444444    4334456676665

>PRK12744 short chain dehydrogenase; Provisional

Probab=96.59  E-value=0.12  Score=46.47  Aligned_cols=33  Identities=18%  Similarity=0.124  Sum_probs=28.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~   80 (305)
                      .+++.|+||+|.+|..++..|+..|.  ++++++.
T Consensus         8 ~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~   40 (257)
T PRK12744          8 GKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHY   40 (257)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--cEEEEec
Confidence            35899999999999999999999887  7666664

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.56  E-value=0.0061  Score=59.18  Aligned_cols=77  Identities=14%  Similarity=0.184  Sum_probs=47.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc-CCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~-~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      .+++||+|+||+|++|..+...|..++.. ||.++..+...|+...-.+.. ....+..+. ..+ .+.++++|+||++.
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~-el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al  112 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDF-EITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL  112 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCC-eEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence            35679999999999999999999888643 888887654334322111100 001111111 112 23479999999976


Q ss_pred             C
Q 021932          123 G  123 (305)
Q Consensus       123 g  123 (305)
                      +
T Consensus       113 p  113 (381)
T PLN02968        113 P  113 (381)
T ss_pred             C
Confidence            5

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.55  E-value=0.014  Score=47.89  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=30.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .||+|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus         3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~   36 (135)
T PF00899_consen    3 KRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDI   36 (135)
T ss_dssp             -EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred             CEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcc
Confidence            59999999 9999999999999987 5999999864

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.54  E-value=0.028  Score=48.52  Aligned_cols=33  Identities=36%  Similarity=0.578  Sum_probs=29.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ||.|+|+ |-+|+.++..|+..|+ .++.|+|.+.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            6899999 9999999999999987 4899999874

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.53  E-value=0.034  Score=52.76  Aligned_cols=113  Identities=13%  Similarity=0.087  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---HHHH-------h
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a-------l  112 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++  +.....++....  .++..+. .-+|   .+++       +
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~   83 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL   83 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence            35899999999999999999999998  899999865  222223333211  1222111 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCC--C-Cch---hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRKP--G-MTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~--g-~~r---~d~~~~N----~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ...|++|.++|.....  . .+.   ...+..|    +...+.+.+.+.+.. .+.|++++
T Consensus        84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~is  143 (334)
T PRK07109         84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVG  143 (334)
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeC
Confidence            3689999999864211  1 111   1223333    445556666666543 35555554

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.53  E-value=0.0097  Score=53.63  Aligned_cols=99  Identities=24%  Similarity=0.359  Sum_probs=62.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCC--chh-------hhhhhcccCCceEEEEecCCCHHHHhCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNT--PGV-------TADISHMDTNAVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~--~g~-------~~DL~~~~~~~~v~~~~~t~d~~~al~~a  115 (305)
                      ..||.|+|| |..|..++..|...|. .++|.++|++.+  ...       ..++.+......   .  ..+++++++++
T Consensus        25 ~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~--~~~l~~~l~~~   98 (226)
T cd05311          25 EVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---T--GGTLKEALKGA   98 (226)
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---c--cCCHHHHHhcC
Confidence            358999999 9999999999988876 238999999841  111       122222110011   1  12566889999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 021932          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~  168 (305)
                      |++|-+.+    +|+-       +    .+..+.+   +++.+++..+||...
T Consensus        99 dvlIgaT~----~G~~-------~----~~~l~~m---~~~~ivf~lsnP~~e  133 (226)
T cd05311          99 DVFIGVSR----PGVV-------K----KEMIKKM---AKDPIVFALANPVPE  133 (226)
T ss_pred             CEEEeCCC----CCCC-------C----HHHHHhh---CCCCEEEEeCCCCCc
Confidence            99999865    2331       1    1233333   367777788899753

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK05693 short chain dehydrogenase; Provisional

Probab=96.53  E-value=0.025  Score=51.46  Aligned_cols=34  Identities=24%  Similarity=0.219  Sum_probs=30.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +++.|+||+|.+|..++..|+..|.  +|++++++.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~   35 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKA   35 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999998  899999865

>PRK12742 oxidoreductase; Provisional

Probab=96.52  E-value=0.056  Score=47.66  Aligned_cols=34  Identities=26%  Similarity=0.321  Sum_probs=29.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~   81 (305)
                      .++|.|+||+|.+|..++..|+..|.  ++++.+..
T Consensus         6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~   39 (237)
T PRK12742          6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAG   39 (237)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCC
Confidence            35899999999999999999999988  78877653

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.52  E-value=0.037  Score=49.28  Aligned_cols=34  Identities=21%  Similarity=0.280  Sum_probs=28.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~   80 (305)
                      +.++|.|+||+|++|++++..|++.|.  ++++...
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~   38 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK   38 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence            346899999999999999999999998  7766553

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.51  E-value=0.073  Score=47.76  Aligned_cols=103  Identities=18%  Similarity=0.197  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---H-------HH
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---E-------DA  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~-------~a  111 (305)
                      +.++|.|+||+|.+|..++..|+..|.  +++++|.+..  .....++.+..  .++..+. .-+|.   +       +.
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~   85 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSK   85 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            346999999999999999999999997  8999987652  22223333221  1121111 11122   1       22


Q ss_pred             hCCCCEEEEcCCCCCC--CCCchh---hHHHhhHHHHHHHHHHHH
Q 021932          112 LTGMDIVIIPAGVPRK--PGMTRD---DLFNINAGIVKTLCEGIA  151 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~--~g~~r~---d~~~~N~~i~~~i~~~I~  151 (305)
                      +...|++|.++|....  ...+..   +.+..|+.....+.+.+.
T Consensus        86 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~  130 (255)
T PRK06113         86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVA  130 (255)
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence            3457999999985321  122222   235566665555555543

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=96.51  E-value=0.038  Score=48.87  Aligned_cols=71  Identities=18%  Similarity=0.291  Sum_probs=44.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe-cCCC------HHHHhCCCCEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ------LEDALTGMDIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~t~d------~~~al~~aDiVI  119 (305)
                      |+|.|+||+|.+|..++..|+..+....+++.+.+....    ..    ..++..+. .-++      ..+.+...|++|
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~----~~~~~~~~~Dls~~~~~~~~~~~~~~id~li   72 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQ----HDNVQWHALDVTDEAEIKQLSEQFTQLDWLI   72 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----cc----cCceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence            589999999999999999998875433677766644211    10    11111110 0111      223456899999


Q ss_pred             EcCCCC
Q 021932          120 IPAGVP  125 (305)
Q Consensus       120 i~ag~~  125 (305)
                      .++|..
T Consensus        73 ~~aG~~   78 (235)
T PRK09009         73 NCVGML   78 (235)
T ss_pred             ECCccc
Confidence            999975

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=96.51  E-value=0.025  Score=50.41  Aligned_cols=36  Identities=31%  Similarity=0.285  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.+++.|+||+|.+|+.++..|+..|.  +++++|.+.
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~   42 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence            345899999999999999999999998  999999865

>PRK08589 short chain dehydrogenase; Validated

Probab=96.51  E-value=0.056  Score=49.26  Aligned_cols=113  Identities=17%  Similarity=0.250  Sum_probs=64.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEe-cCCC---HHH-------HhC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL-GQQQ---LED-------ALT  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~-------al~  113 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++++++ +.....++.+..  .++..+. .-++   .++       .+.
T Consensus         6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            35899999999999999999999998  999999874 222223333221  1122111 1112   111       123


Q ss_pred             CCCEEEEcCCCCCCCC----Cch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKPG----MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g----~~r---~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..|++|.++|.....+    .+.   ...+..|+.    +.+.+.+.+.+.  .+.|++++.
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS  141 (272)
T PRK08589         82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSS  141 (272)
T ss_pred             CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCc
Confidence            5799999998743211    111   223344543    445555555543  356666654

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=96.50  E-value=0.039  Score=49.15  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=28.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~   80 (305)
                      +++|.|+||+|.+|+.++..|++.|.  ++++.+.
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~--~v~~~~~   34 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGW--SVGINYA   34 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence            45899999999999999999999987  7777653

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.50  E-value=0.0067  Score=55.55  Aligned_cols=124  Identities=18%  Similarity=0.165  Sum_probs=80.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC---------CcEEEEEeCCCC--chhhhhhhcc--cC--CceEEEEecCCCHHH
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL---------VSVLHLYDVVNT--PGVTADISHM--DT--NAVVRGFLGQQQLED  110 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~---------~~el~L~D~~~~--~g~~~DL~~~--~~--~~~v~~~~~t~d~~~  110 (305)
                      ..||.|.|| |.-|..++.+|...+.         .+.++++|.+-+  .+. .||...  ..  +.+-.  ....++.+
T Consensus        25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r-~~l~~~~~~~~~~~~~~--~~~~~L~e  100 (254)
T cd00762          25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR-KETCPNEYHLARFANPE--RESGDLED  100 (254)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC-CccCHHHHHHHHHcCcc--cccCCHHH
Confidence            358999999 9999999987776432         148999998751  111 112111  00  11111  11247899


Q ss_pred             HhC--CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC--ccHHHHHHHHHHhCCCCCC
Q 021932          111 ALT--GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKKVGTYDPK  186 (305)
Q Consensus       111 al~--~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd--~lt~~~~~~~~~~s~~p~~  186 (305)
                      +++  ++|+.|=+.+.+   |           -+.+++++.|.+++++.+|+-.|||..  -.++   +-.++.+  +-+
T Consensus       101 av~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp---e~a~~~t--~G~  161 (254)
T cd00762         101 AVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTSKAECTA---EEAYTAT--EGR  161 (254)
T ss_pred             HHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCCccccCH---HHHHhhc--CCC
Confidence            999  999988776544   2           235778899999999999999999987  4443   2223332  125


Q ss_pred             cEEEee
Q 021932          187 RLLGVT  192 (305)
Q Consensus       187 kviG~t  192 (305)
                      .+|++.
T Consensus       162 ai~AtG  167 (254)
T cd00762         162 AIFASG  167 (254)
T ss_pred             EEEEEC
Confidence            688874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=96.50  E-value=0.019  Score=53.18  Aligned_cols=69  Identities=26%  Similarity=0.250  Sum_probs=45.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhC--CCCcEEE-EEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~--~~~~el~-L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      +++||+|||. |.+|..++..|...  ++  +|+ ++|.++.+  +.++....  .....   .+++++.+.++|+|+++
T Consensus         5 ~~irIGIIG~-G~IG~~~a~~L~~~~~~~--el~aV~dr~~~~--a~~~a~~~--g~~~~---~~~~eell~~~D~Vvi~   74 (271)
T PRK13302          5 PELRVAIAGL-GAIGKAIAQALDRGLPGL--TLSAVAVRDPQR--HADFIWGL--RRPPP---VVPLDQLATHADIVVEA   74 (271)
T ss_pred             CeeEEEEECc-cHHHHHHHHHHHhcCCCe--EEEEEECCCHHH--HHHHHHhc--CCCcc---cCCHHHHhcCCCEEEEC
Confidence            4579999998 99999999888763  34  655 77876522  12222111  00111   13567778999999999


Q ss_pred             CC
Q 021932          122 AG  123 (305)
Q Consensus       122 ag  123 (305)
                      ++
T Consensus        75 tp   76 (271)
T PRK13302         75 AP   76 (271)
T ss_pred             CC
Confidence            75

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.50  E-value=0.017  Score=53.50  Aligned_cols=113  Identities=23%  Similarity=0.269  Sum_probs=63.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEE-ecCCCH---H-------HHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGF-LGQQQL---E-------DAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~-~~t~d~---~-------~al  112 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++.  ...+.++...   ..+..+ ..-+|.   +       +.+
T Consensus         9 gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~   83 (296)
T PRK05872          9 GKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGGD---DRVLTVVADVTDLAAMQAAAEEAVERF   83 (296)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  8999998752  2222233211   111111 111222   1       123


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~~--p~aiviv~t  163 (305)
                      ...|++|.++|.....   ..+   -.+.+..|+.....+++.+..+-  ..+.|+++|
T Consensus        84 g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~is  142 (296)
T PRK05872         84 GGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVS  142 (296)
T ss_pred             CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            5689999999964311   111   12345556555544444443321  235555555

>PLN02928 oxidoreductase family protein

Probab=96.49  E-value=0.012  Score=56.47  Aligned_cols=104  Identities=23%  Similarity=0.199  Sum_probs=61.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhh--hcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI--SHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL--~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      ...++|+|+|. |.+|+.+|..|...|.  +|..+|..........+  ................++++.++.||+|+++
T Consensus       157 l~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~  233 (347)
T PLN02928        157 LFGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC  233 (347)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence            34569999999 9999999999987787  99999985311111100  0000000000000123688999999999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ....  + +        +-.++.  .+.+.+..|.+++|+++
T Consensus       234 lPlt--~-~--------T~~li~--~~~l~~Mk~ga~lINva  262 (347)
T PLN02928        234 CTLT--K-E--------TAGIVN--DEFLSSMKKGALLVNIA  262 (347)
T ss_pred             CCCC--h-H--------hhcccC--HHHHhcCCCCeEEEECC
Confidence            6321  1 1        111111  24444556889999986

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=96.44  E-value=0.011  Score=53.60  Aligned_cols=112  Identities=13%  Similarity=0.111  Sum_probs=60.7

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chh--h-hhhhccc--------CCceEEEEecC----------CC
Q 021932           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGV--T-ADISHMD--------TNAVVRGFLGQ----------QQ  107 (305)
Q Consensus        51 IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~--~-~DL~~~~--------~~~~v~~~~~t----------~d  107 (305)
                      |+||+||+|+++...|+..+...+|+++-+...  .+.  . ..+.+..        ...+++.+.+.          .+
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            689999999999998887765228888877541  111  1 1111110        13455554332          13


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +.+..+.+|+||.+|+.-. ...+..++...|+..++++++...+.....++.+.|
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~-~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iST  135 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVN-FNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYIST  135 (249)
T ss_dssp             HHHHHHH--EEEE--SS-S-BS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEE
T ss_pred             hhccccccceeeecchhhh-hcccchhhhhhHHHHHHHHHHHHHhccCcceEEecc
Confidence            4344489999999987431 122344567889999999999998655445555555

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=96.42  E-value=0.11  Score=46.79  Aligned_cols=115  Identities=15%  Similarity=0.165  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEe-cCCCHH---HH-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL-GQQQLE---DA-------  111 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~t~d~~---~a-------  111 (305)
                      .+++.|+||+|.+|..++..|+..|.  .+++...+..   .....++...  ..++..+. .-+|.+   +.       
T Consensus         7 ~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~~~   82 (261)
T PRK08936          7 GKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKA--GGEAIAVKGDVTVESDVVNLIQTAVKE   82 (261)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEecCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999997  7777766431   1122223221  11222111 112221   11       


Q ss_pred             hCCCCEEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          112 LTGMDIVIIPAGVPRKP---GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +...|++|.++|.....   ..+.   ...+..|+.    ..+.+.+.+.+....+.++++|.
T Consensus        83 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS  145 (261)
T PRK08936         83 FGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS  145 (261)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence            23579999999864321   1111   223455643    34555666666555566665553

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.42  E-value=0.011  Score=56.61  Aligned_cols=71  Identities=21%  Similarity=0.376  Sum_probs=46.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++||+|+||+|++|.-+..+|..+++ ..+|+++-..+..|+.+.+..    ..+... .. +. ++++++|+||++.+
T Consensus         4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~----~~l~~~-~~-~~-~~~~~vD~vFla~p   75 (336)
T PRK05671          4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG----KNLRVR-EV-DS-FDFSQVQLAFFAAG   75 (336)
T ss_pred             CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC----cceEEe-eC-Ch-HHhcCCCEEEEcCC
Confidence            47999999999999999999986543 347777765443344333222    122221 11 22 34789999999864

>PRK07023 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.023  Score=50.57  Aligned_cols=35  Identities=17%  Similarity=0.193  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +|||.|+||+|.+|..++..|+..|.  +|++++++.
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~   35 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR   35 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence            36899999999999999999999997  899998865

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.41  E-value=0.028  Score=50.19  Aligned_cols=36  Identities=31%  Similarity=0.445  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +..||+|+|+ |-+|+.++..|+..|+ .++.++|.+.
T Consensus        27 ~~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   62 (212)
T PRK08644         27 KKAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDV   62 (212)
T ss_pred             hCCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            3458999999 9999999999999997 4899999873

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.40  E-value=0.069  Score=48.73  Aligned_cols=35  Identities=23%  Similarity=0.186  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+.+.|+||+|.+|..++..|+.+|.  +|++++.+.
T Consensus        10 ~~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~   44 (274)
T PRK07775         10 RRPALVAGASSGIGAATAIELAAAGF--PVALGARRV   44 (274)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            34899999999999999999999998  888888754

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.40  E-value=0.011  Score=56.74  Aligned_cols=71  Identities=24%  Similarity=0.399  Sum_probs=46.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++||+|+||+|++|..+...|..+++ ..++.++......|+..+...    ..+..-  ..+ .++++++|+||++++
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~----~~~~v~--~~~-~~~~~~~D~vf~a~p   78 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG----RDYTVE--ELT-EDSFDGVDIALFSAG   78 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC----ceeEEE--eCC-HHHHcCCCEEEECCC
Confidence            46999999999999999999987553 357777755443343332211    222221  123 356799999999875

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=96.39  E-value=0.045  Score=49.73  Aligned_cols=118  Identities=14%  Similarity=0.113  Sum_probs=75.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecC-------CCHHHHhCCCCE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ-------QQLEDALTGMDI  117 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t-------~d~~~al~~aDi  117 (305)
                      +-+.|+||++-+|..+|..|+..|.  .|+|..+..  ++..+.++.+....+..-.+...       ....+.+...|+
T Consensus         7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            3578999999999999999999999  999999876  45555566631100100001000       123455678999


Q ss_pred             EEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCC
Q 021932          118 VIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPV  166 (305)
Q Consensus       118 VIi~ag~~~~~g------~~r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tNPv  166 (305)
                      .|..||......      .+...++..|++.+......+-..   ...+.||+++.=.
T Consensus        85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiA  142 (246)
T COG4221          85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIA  142 (246)
T ss_pred             EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccc
Confidence            999999754321      124557788887666655554322   2356788877543

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.39  E-value=0.018  Score=54.03  Aligned_cols=67  Identities=19%  Similarity=0.185  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ...||.|+|+ |.+|..++..|...|.  +|.++|++.. ...+.++   .  .....   ..++.+.++++|+||.+.
T Consensus       151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G--~~~~~---~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        151 HGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---G--LSPFH---LSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---C--Ceeec---HHHHHHHhCCCCEEEECC
Confidence            4569999998 9999999999998886  9999998752 1122211   1  11111   124667889999999986

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.38  E-value=0.043  Score=45.38  Aligned_cols=33  Identities=24%  Similarity=0.498  Sum_probs=29.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ||.|+|+ |.+|+.++..|+..|+ .++.++|.+.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT   33 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence            6899999 9999999999999998 5899999874

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK08324 short chain dehydrogenase; Validated

Probab=96.38  E-value=0.032  Score=58.12  Aligned_cols=35  Identities=34%  Similarity=0.410  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus       422 gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~  456 (681)
T PRK08324        422 GKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDE  456 (681)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCH
Confidence            35899999999999999999999987  899999876

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.37  E-value=0.0036  Score=60.46  Aligned_cols=75  Identities=25%  Similarity=0.296  Sum_probs=44.7

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      |.|+|+ |.||+.++..|++.+...+|++.|++..+  ..+.++ .......+.. .....++.+.++++|+||.|+|..
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~   78 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF   78 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-cccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence            789999 99999999999988765699999997622  222222 1111111111 111123566789999999998743

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.36  E-value=0.037  Score=54.52  Aligned_cols=91  Identities=20%  Similarity=0.157  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ...+|+|+|. |.+|..++..+...|.  +|+++|+++.+.... ..+ .  ..  .    .+++++++++|+||.+.|.
T Consensus       211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A-~~~-G--~~--v----~~l~eal~~aDVVI~aTG~  277 (425)
T PRK05476        211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQA-AMD-G--FR--V----MTMEEAAELGDIFVTATGN  277 (425)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHH-Hhc-C--CE--e----cCHHHHHhCCCEEEECCCC
Confidence            4459999999 9999999999998887  899999976321111 011 1  11  1    1356889999999988642


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNP  165 (305)
                      +               .++.  .+.+....+.+++++++-+
T Consensus       278 ~---------------~vI~--~~~~~~mK~GailiNvG~~  301 (425)
T PRK05476        278 K---------------DVIT--AEHMEAMKDGAILANIGHF  301 (425)
T ss_pred             H---------------HHHH--HHHHhcCCCCCEEEEcCCC
Confidence            1               2222  1223333477899988744

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.36  E-value=0.069  Score=47.36  Aligned_cols=34  Identities=21%  Similarity=0.231  Sum_probs=31.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ++|.|+|++|.+|..++..|+..|.  +|+++++++
T Consensus         7 k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~   40 (239)
T PRK08703          7 KTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ   40 (239)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            5899999999999999999999998  899999876

>PLN02503 fatty acyl-CoA reductase 2

Probab=96.34  E-value=0.053  Score=55.75  Aligned_cols=118  Identities=15%  Similarity=0.113  Sum_probs=73.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCC--ch--hh-hhhhccc----------------CCceEEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT--PG--VT-ADISHMD----------------TNAVVRGF  102 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~--~g--~~-~DL~~~~----------------~~~~v~~~  102 (305)
                      +.++|.|+||+||+|..++..|+..+ -+.+|+++.+...  .+  .. .++.+..                ...++..+
T Consensus       118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v  197 (605)
T PLN02503        118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV  197 (605)
T ss_pred             cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence            45799999999999999999888654 3568888877431  11  00 1111100                01234433


Q ss_pred             ecC-C---------CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          103 LGQ-Q---------QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       103 ~~t-~---------d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                      .+. +         +++...++.|+||.+|+... ...+..+.+..|+....++++...+.. .+.++.+.|
T Consensus       198 ~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vST  268 (605)
T PLN02503        198 VGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVST  268 (605)
T ss_pred             EeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccC
Confidence            221 1         23333467999999997543 234455677889999999999887764 344444444

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.34  E-value=0.14  Score=45.98  Aligned_cols=114  Identities=17%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCHH------HHhCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQLE------DALTGMD  116 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~~------~al~~aD  116 (305)
                      .+++.|+|++|.+|..++..|+..|.  +|+++|+++.  .....++.... ..++..+. .-+|.+      +.+...|
T Consensus         7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id   83 (259)
T PRK06125          7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID   83 (259)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence            45899999999999999999999988  9999998752  22222233211 11222211 111221      1245799


Q ss_pred             EEEEcCCCCCC-C--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932          117 IVIIPAGVPRK-P--GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       117 iVIi~ag~~~~-~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ++|.++|.... +  ..+.   ...+..|+.    +.+.+.+.+.+.. .+.++++|
T Consensus        84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~is  139 (259)
T PRK06125         84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVI  139 (259)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEec
Confidence            99999986421 1  1111   233455554    4444555555443 34555554

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.32  E-value=0.018  Score=53.84  Aligned_cols=96  Identities=22%  Similarity=0.220  Sum_probs=61.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ...||+|+|+ |.+|..++..|...|.  +|.++|+++...  ..+.... ...+.    ..++.+.++++|+||.+...
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~--~~~~~~g-~~~~~----~~~l~~~l~~aDiVint~P~  219 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADL--ARITEMG-LIPFP----LNKLEEKVAEIDIVINTIPA  219 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHCC-Ceeec----HHHHHHHhccCCEEEECCCh
Confidence            3469999999 9999999999998886  899999865211  1111111 11111    12466788999999998632


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-cCCCCc
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNS  168 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~-tNPvd~  168 (305)
                      .         ++  +    .+   .+....|+++++.+ ++|-.+
T Consensus       220 ~---------ii--~----~~---~l~~~k~~aliIDlas~Pg~t  246 (287)
T TIGR02853       220 L---------VL--T----AD---VLSKLPKHAVIIDLASKPGGT  246 (287)
T ss_pred             H---------Hh--C----HH---HHhcCCCCeEEEEeCcCCCCC
Confidence            1         11  1    11   23334567888877 588654

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.31  E-value=0.026  Score=49.82  Aligned_cols=34  Identities=15%  Similarity=0.064  Sum_probs=31.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ++|.|+|++|.+|+.++..|+..|.  +|+++|+++
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   35 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP   35 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            4799999999999999999999998  999999876

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=96.30  E-value=0.016  Score=53.85  Aligned_cols=61  Identities=18%  Similarity=0.294  Sum_probs=44.1

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        51 IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      |||. |.+|..++..|+..|+  +|.++|+++..  ..++....    ...   +.+..++++++|+||++..
T Consensus         1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~~~~~~advVil~vp   61 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQA---AASPAEAAEGADRVITMLP   61 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence            5798 9999999999999998  99999987521  12222211    111   2356788999999999864

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK12747 short chain dehydrogenase; Provisional

Probab=96.30  E-value=0.26  Score=43.97  Aligned_cols=33  Identities=24%  Similarity=0.290  Sum_probs=28.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~   80 (305)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.+.
T Consensus         4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~   36 (252)
T PRK12747          4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYG   36 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence            35899999999999999999999998  7888754

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.26  E-value=0.036  Score=54.49  Aligned_cols=124  Identities=24%  Similarity=0.310  Sum_probs=70.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh---hhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~---~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      +.++|.|+|+ |.+|..+|..|+..|.  +|+++|.+.....   ..+|...    .++.+.+.. ..+...++|+||.+
T Consensus         4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~~-~~~~~~~~d~vv~~   75 (450)
T PRK14106          4 KGKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGEY-PEEFLEGVDLVVVS   75 (450)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCCc-chhHhhcCCEEEEC
Confidence            3469999999 8899999999999998  9999999752111   1222211    122222221 12446789999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCccHHHHHHHHHH
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNSTVPIAAEVFKK  179 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~lt~~~~~~~~~  179 (305)
                      +|.+... ......-+.+++++.......... + ..+|-+|  |==...+.++.+++..
T Consensus        76 ~g~~~~~-~~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         76 PGVPLDS-PPVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             CCCCCCC-HHHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHH
Confidence            8864221 111112234566665554433322 2 3344454  4333455666666654

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.24  E-value=0.013  Score=56.08  Aligned_cols=72  Identities=24%  Similarity=0.311  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +.+||+|+||+|++|..+..+|..+.+ ..+|.++-.....|+...+..    ..+....  .+ +.++.++|+||++++
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~----~~~~v~~--~~-~~~~~~~Dvvf~a~p   75 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGG----KSVTVQD--AA-EFDWSQAQLAFFVAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECC----cceEEEe--Cc-hhhccCCCEEEECCC
Confidence            456999999999999999999988432 348888865444444333321    1233211  12 245688999999875

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.24  E-value=0.025  Score=49.78  Aligned_cols=113  Identities=16%  Similarity=0.171  Sum_probs=63.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHH---HhC--CCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLED---ALT--GMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~---al~--~aDiVIi  120 (305)
                      +++.|+|++|.+|+.++..|+..|.  +|+++|.+....  .++..... ..+.. +....+.++   .+.  ..|+||.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~~--~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~   76 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAAL--AALQALGA-EALALDVADPASVAGLAWKLDGEALDAAVY   76 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHHH--HHHHhccc-eEEEecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence            4789999999999999999998887  899999865211  11221110 01111 111112222   122  4799999


Q ss_pred             cCCCCCC---C--CCch---hhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 021932          121 PAGVPRK---P--GMTR---DDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (305)
Q Consensus       121 ~ag~~~~---~--g~~r---~d~~~~N~~i~~~i~~~I~~~~--p~aiviv~tN  164 (305)
                      ++|....   +  ..+.   ...+..|+.....+.+.+.++-  ..+.+++++.
T Consensus        77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS  130 (222)
T PRK06953         77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSS  130 (222)
T ss_pred             CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcC
Confidence            9986421   1  1122   3346667766666666555432  2344554443

>PRK06123 short chain dehydrogenase; Provisional

Probab=96.21  E-value=0.079  Score=47.05  Aligned_cols=34  Identities=26%  Similarity=0.303  Sum_probs=28.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.+.|+|++|.+|+.++..|+..|.  .+++.+...
T Consensus         3 ~~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~   36 (248)
T PRK06123          3 KVMIITGASRGIGAATALLAAERGY--AVCLNYLRN   36 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEecCCC
Confidence            3689999999999999999999887  777777543

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.20  E-value=0.035  Score=53.06  Aligned_cols=36  Identities=22%  Similarity=0.238  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +..||.|||+ |.+|+.++..|+..|+ .+|.|+|.+.
T Consensus        23 ~~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence            3458999999 9999999999999997 4999999874

>PRK07578 short chain dehydrogenase; Provisional

Probab=96.20  E-value=0.041  Score=47.54  Aligned_cols=104  Identities=20%  Similarity=0.164  Sum_probs=59.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      |++.|+||+|.+|..++..|.+. .  +|++++++.. ....|+.+...   ++      ...+.+...|++|.++|...
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~~~---~~------~~~~~~~~id~lv~~ag~~~   67 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDPAS---IR------ALFEKVGKVDAVVSAAGKVH   67 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCChHH---HH------HHHHhcCCCCEEEECCCCCC
Confidence            47999999999999999999877 4  8899987541 11223333210   00      01122347899999998642


Q ss_pred             CC---CCchh---hHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          127 KP---GMTRD---DLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       127 ~~---g~~r~---d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                      ..   ..+..   +.+..|+.....+.+...++- +.+.++++|
T Consensus        68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  111 (199)
T PRK07578         68 FAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS  111 (199)
T ss_pred             CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence            11   12222   234455554445554444332 345555554

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.20  E-value=0.044  Score=50.26  Aligned_cols=68  Identities=26%  Similarity=0.274  Sum_probs=43.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ++||+|+|++|.+|+.++..+...+-..-+.++|.+.......  ..    ..+..   .+|+++.++++|+||.+.
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~--~~----~~i~~---~~dl~~ll~~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ--GA----LGVAI---TDDLEAVLADADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc--CC----CCccc---cCCHHHhccCCCEEEECC
Confidence            4699999988999999998887654333344578765211111  11    11221   347777788999999764

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.20  E-value=0.16  Score=45.28  Aligned_cols=36  Identities=14%  Similarity=0.098  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.+.+.|+||++-+|..++..|++.|.  +|+++++++
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~   39 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQ   39 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            345899999999999999999999998  899999876

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.19  E-value=0.069  Score=49.75  Aligned_cols=120  Identities=18%  Similarity=0.227  Sum_probs=78.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEE----ecCCCHH-------HHhC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF----LGQQQLE-------DALT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~----~~t~d~~-------~al~  113 (305)
                      +.|.|+|||.-+|.++|+.|+..|.  .++++....  ++-.+.++.......++...    +..++.+       ..+.
T Consensus        13 kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg   90 (282)
T KOG1205|consen   13 KVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG   90 (282)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence            4788999999999999999999998  778877654  22222444433211112221    1111222       3457


Q ss_pred             CCCEEEEcCCCCCCCC-Cc------hhhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecCCCCccH
Q 021932          114 GMDIVIIPAGVPRKPG-MT------RDDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNSTV  170 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g-~~------r~d~~~~N----~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt  170 (305)
                      +.|+.|..||+.+ .+ .+      ....++.|    +-..+...+.+++.+ ++-|++++.....++
T Consensus        91 ~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~  156 (282)
T KOG1205|consen   91 RVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMP  156 (282)
T ss_pred             CCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccC
Confidence            9999999999876 33 11      12233433    678899999999888 888888887776553

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.17  E-value=0.019  Score=56.33  Aligned_cols=105  Identities=20%  Similarity=0.231  Sum_probs=64.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ....+|+|+|+ |.+|..++..|...|. .+|.++|++..+.  .++.... ...  .+. ..++.+++.++|+||.+.+
T Consensus       178 l~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra--~~la~~~-g~~--~i~-~~~l~~~l~~aDvVi~aT~  249 (417)
T TIGR01035       178 LKGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERA--EDLAKEL-GGE--AVK-FEDLEEYLAEADIVISSTG  249 (417)
T ss_pred             ccCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHH--HHHHHHc-CCe--Eee-HHHHHHHHhhCCEEEECCC
Confidence            44569999999 9999999999988774 3899999865221  1122111 111  111 1356688899999999976


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST  169 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~l  169 (305)
                      .+..- .        +    .+.++...... ...+++=+++|-|+=
T Consensus       250 s~~~i-i--------~----~e~l~~~~~~~~~~~~viDla~Prdid  283 (417)
T TIGR01035       250 APHPI-V--------S----KEDVERALRERTRPLFIIDIAVPRDVD  283 (417)
T ss_pred             CCCce-E--------c----HHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            54211 0        1    11122222111 245788889998874

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.15  Score=45.87  Aligned_cols=35  Identities=31%  Similarity=0.294  Sum_probs=30.4

Q ss_pred             CCEEEEEcCCC-chHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG-~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+++.|+||+| -+|..++..|+..|.  +|++.|.+.
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~   52 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHE   52 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            35899999987 599999999999998  799999865

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.16  E-value=0.013  Score=55.73  Aligned_cols=75  Identities=24%  Similarity=0.198  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc--cCCceEEEEecCCCHHH-HhCCCCEEEEc
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTNAVVRGFLGQQQLED-ALTGMDIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~--~~~~~v~~~~~t~d~~~-al~~aDiVIi~  121 (305)
                      +++||+|+||+|+.|.-+..+|..++.+ |+.++...+..|..+.-.|.  .....++..  ..|.++ ...+||+||++
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFla   77 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLA   77 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEe
Confidence            3679999999999999999999988865 68888775544543322222  111223321  112222 24569999997


Q ss_pred             C
Q 021932          122 A  122 (305)
Q Consensus       122 a  122 (305)
                      .
T Consensus        78 l   78 (349)
T COG0002          78 L   78 (349)
T ss_pred             c
Confidence            4

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.16  E-value=0.39  Score=43.29  Aligned_cols=34  Identities=15%  Similarity=0.262  Sum_probs=29.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~   80 (305)
                      +.++|.|+||++.+|..++..|+..|.  .|++.+.
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~   40 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYN   40 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcC
Confidence            345899999999999999999999998  7888754

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.15  E-value=0.039  Score=49.76  Aligned_cols=35  Identities=17%  Similarity=0.258  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus         6 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (263)
T PRK06200          6 GQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA   40 (263)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999999998  899999875

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.15  E-value=0.051  Score=51.43  Aligned_cols=65  Identities=17%  Similarity=0.199  Sum_probs=43.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      .+||+|||. |.+|.+++..|...|+  ++++.+....... ..+....    +..   . +..+++++||+|+++.
T Consensus         3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~~---~-s~~ea~~~ADiVvLaV   67 (314)
T TIGR00465         3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FKV---G-TVEEAIPQADLIMNLL   67 (314)
T ss_pred             cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CEE---C-CHHHHHhcCCEEEEeC
Confidence            358999998 9999999999999887  6666554321111 1111111    121   1 3568889999999986

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=96.15  E-value=0.073  Score=47.30  Aligned_cols=31  Identities=19%  Similarity=0.206  Sum_probs=27.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD   79 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D   79 (305)
                      +.+.|+|++|.+|..++..|+..|.  ++++..
T Consensus         4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~   34 (246)
T PRK12938          4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGC   34 (246)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCC--EEEEEc
Confidence            3689999999999999999999997  777754

>PRK07201 short chain dehydrogenase; Provisional

Probab=96.13  E-value=0.051  Score=55.82  Aligned_cols=115  Identities=16%  Similarity=0.138  Sum_probs=65.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-----
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-----  112 (305)
                      .+.+++.|+||+|.+|..++..|+..|.  +|+++++++.  .....++...  ..++..+.. -+|   .++++     
T Consensus       369 ~~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~  444 (657)
T PRK07201        369 LVGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAK--GGTAHAYTCDLTDSAAVDHTVKDILA  444 (657)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            3346899999999999999999999998  8999998752  2222223221  112222111 112   22233     


Q ss_pred             --CCCCEEEEcCCCCCCCC--------CchhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEec
Q 021932          113 --TGMDIVIIPAGVPRKPG--------MTRDDLFNINAGIVK----TLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 --~~aDiVIi~ag~~~~~g--------~~r~d~~~~N~~i~~----~i~~~I~~~~p~aiviv~t  163 (305)
                        ...|++|.++|......        ++-...+..|+....    .+.+.+.+.. .+.|+++|
T Consensus       445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~is  508 (657)
T PRK07201        445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERR-FGHVVNVS  508 (657)
T ss_pred             hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCEEEEEC
Confidence              26899999998642211        112234555655444    4444444443 34555554

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.11  E-value=0.024  Score=53.90  Aligned_cols=73  Identities=15%  Similarity=0.157  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ...+++|||+ |.+|...+..+.......+|.++|++.  +...+.++.+.  ...+..   ..+.++++++||+|+.+.
T Consensus       127 ~~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~---~~~~~eav~~aDiVitaT  200 (325)
T TIGR02371       127 DSSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA---ATDPREAVEGCDILVTTT  200 (325)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE---eCCHHHHhccCCEEEEec
Confidence            3568999998 999998776666544568999999986  23333444432  222333   246789999999999875


Q ss_pred             C
Q 021932          123 G  123 (305)
Q Consensus       123 g  123 (305)
                      .
T Consensus       201 ~  201 (325)
T TIGR02371       201 P  201 (325)
T ss_pred             C
Confidence            3

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.11  E-value=0.087  Score=48.23  Aligned_cols=99  Identities=19%  Similarity=0.206  Sum_probs=56.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHH------hCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA------LTGM  115 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a------l~~a  115 (305)
                      .+.|+|+ |.+|..++..|. .|.  +|+++|+++.  .....++...  ..++..+. .-+|   .++.      +...
T Consensus         4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKALAATAQTLGPV   77 (275)
T ss_pred             EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence            4566676 899999999985 676  9999998752  1122223221  11222111 1112   2222      2468


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh
Q 021932          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC  153 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~  153 (305)
                      |++|.+||.... ..+-.+.+..|+.....+.+.+.+.
T Consensus        78 d~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~  114 (275)
T PRK06940         78 TGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKV  114 (275)
T ss_pred             CEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999997521 2334556677776655555555443

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.11  E-value=0.025  Score=53.67  Aligned_cols=74  Identities=12%  Similarity=0.174  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ...+++|||+ |..|...+..+....-+.+|.++|+++.  ...+.++.+.. ...+..+   .+++++++++|+||.+.
T Consensus       126 ~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~-~~~~~~~---~~~~~~~~~aDiVi~aT  200 (325)
T PRK08618        126 DAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF-NTEIYVV---NSADEAIEEADIIVTVT  200 (325)
T ss_pred             CCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEcc
Confidence            3458999998 9999887776654434579999999762  22333343221 1233332   46788999999999875


Q ss_pred             C
Q 021932          123 G  123 (305)
Q Consensus       123 g  123 (305)
                      +
T Consensus       201 ~  201 (325)
T PRK08618        201 N  201 (325)
T ss_pred             C
Confidence            4

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=96.10  E-value=0.033  Score=56.38  Aligned_cols=98  Identities=23%  Similarity=0.344  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ..++|+|+|. |.+|..+|..|...|.  +|+.||.......+.++   .    +..   ..++++.+++||+|+++...
T Consensus       137 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~~---~~~l~ell~~aDvV~l~lPl  203 (525)
T TIGR01327       137 YGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL---G----VEL---VDDLDELLARADFITVHTPL  203 (525)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc---C----CEE---cCCHHHHHhhCCEEEEccCC
Confidence            3468999999 9999999999987787  99999974321111111   1    111   13578899999999998642


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      .  + +++        .++.  .+.+....|.+++|+++  .-+|.
T Consensus       204 t--~-~T~--------~li~--~~~l~~mk~ga~lIN~aRG~~vde  236 (525)
T TIGR01327       204 T--P-ETR--------GLIG--AEELAKMKKGVIIVNCARGGIIDE  236 (525)
T ss_pred             C--h-hhc--------cCcC--HHHHhcCCCCeEEEEcCCCceeCH
Confidence            1  1 111        1111  13444445788998886  44553

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.09  E-value=0.03  Score=53.27  Aligned_cols=74  Identities=16%  Similarity=0.232  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ..++|+|+|+ |..|...+..+....-+.+|.+++++..  +..+.++.+.. ...+..   ..|++++++++|+||.+.
T Consensus       131 ~~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~---~~d~~~al~~aDiVi~aT  205 (330)
T PRK08291        131 DASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL-GIPVTV---ARDVHEAVAGADIIVTTT  205 (330)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEE---eCCHHHHHccCCEEEEee
Confidence            3459999998 9999988877765333569999998762  33333443221 122332   246789999999998875


Q ss_pred             C
Q 021932          123 G  123 (305)
Q Consensus       123 g  123 (305)
                      .
T Consensus       206 ~  206 (330)
T PRK08291        206 P  206 (330)
T ss_pred             C
Confidence            4

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.06  E-value=0.046  Score=52.30  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +..||.|+|+ |.+|+.++..|+..|+ .+|.++|.+.
T Consensus        23 ~~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence            3458999999 9999999999999997 5999999874

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.05  E-value=0.091  Score=46.72  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=28.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~-D~~~   82 (305)
                      +++.|+||+|.+|..++..|+..|.  +++++ +++.
T Consensus         5 ~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~   39 (250)
T PRK08063          5 KVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSR   39 (250)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            4899999999999999999999987  76664 4443

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.04  E-value=0.062  Score=47.56  Aligned_cols=71  Identities=11%  Similarity=0.082  Sum_probs=46.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +.+||.|||+ |.||...+..|...|.  +|++++.... ....++.+.   ..+......-. ++.+.++|+||.+.+
T Consensus         9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~-~~l~~l~~~---~~i~~~~~~~~-~~~l~~adlViaaT~   79 (202)
T PRK06718          9 SNKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELT-ENLVKLVEE---GKIRWKQKEFE-PSDIVDAFLVIAATN   79 (202)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCC-HHHHHHHhC---CCEEEEecCCC-hhhcCCceEEEEcCC
Confidence            4469999999 9999999999998886  8999975322 222233322   11222111112 367899999888754

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.03  E-value=0.033  Score=56.38  Aligned_cols=97  Identities=23%  Similarity=0.299  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ..++|+|+|. |.+|+.+|..|...|.  +|+.||.........++       .+...    ++++.++.||+|+++...
T Consensus       139 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~~----~l~ell~~aDiV~l~lP~  204 (526)
T PRK13581        139 YGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVELV----SLDELLARADFITLHTPL  204 (526)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEEE----cHHHHHhhCCEEEEccCC
Confidence            4569999999 9999999999988887  99999975321111111       11211    467889999999998642


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      ..   +++ .++  |    .   +.+....|.+++|+++  ..+|.
T Consensus       205 t~---~t~-~li--~----~---~~l~~mk~ga~lIN~aRG~~vde  237 (526)
T PRK13581        205 TP---ETR-GLI--G----A---EELAKMKPGVRIINCARGGIIDE  237 (526)
T ss_pred             Ch---Hhh-cCc--C----H---HHHhcCCCCeEEEECCCCceeCH
Confidence            21   111 111  2    1   2344445889999986  44553

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=96.02  E-value=0.11  Score=45.80  Aligned_cols=31  Identities=19%  Similarity=0.220  Sum_probs=27.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~   80 (305)
                      .+.|+||+|.+|..++..|+..|.  +++++..
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r   32 (242)
T TIGR01829         2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCG   32 (242)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence            578999999999999999999998  8888876

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.01  E-value=0.058  Score=48.49  Aligned_cols=35  Identities=34%  Similarity=0.469  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..||.|+|+ |-+|+.++..|+..|+ .++.|+|.+.
T Consensus        21 ~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            458999999 9999999999999997 5999999764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.00  E-value=0.082  Score=51.97  Aligned_cols=117  Identities=21%  Similarity=0.229  Sum_probs=66.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHH-------HhCCCCE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLED-------ALTGMDI  117 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~-------al~~aDi  117 (305)
                      .+++.|+|++|.+|..++..|+..|.  +++++|.........++........+.. +....+.++       .+...|+
T Consensus       210 g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~  287 (450)
T PRK08261        210 GKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI  287 (450)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            35899999999999999999999987  8999988542111122221110011111 100011111       1236899


Q ss_pred             EEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          118 VIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       118 VIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                      ||.++|.....   .++   ....+..|+.....+.+.+...   .+.+.|+++|.
T Consensus       288 vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS  343 (450)
T PRK08261        288 VVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS  343 (450)
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence            99999865321   111   2334566777777777766652   24466666653

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=96.00  E-value=0.25  Score=44.71  Aligned_cols=31  Identities=26%  Similarity=0.255  Sum_probs=27.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~   80 (305)
                      .+.|+||+|.+|..++..|++.|.  +|++.+.
T Consensus         3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~   33 (267)
T TIGR02685         3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYH   33 (267)
T ss_pred             EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcC
Confidence            688999999999999999999998  8888754

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK08017 oxidoreductase; Provisional

Probab=95.99  E-value=0.033  Score=49.78  Aligned_cols=34  Identities=21%  Similarity=0.146  Sum_probs=30.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ++|.|+||+|.+|..++..|++.|.  +|++++++.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~   36 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY--RVLAACRKP   36 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3799999999999999999999987  889998865

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=95.96  E-value=0.035  Score=52.23  Aligned_cols=74  Identities=14%  Similarity=0.048  Sum_probs=52.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ...+++|||+ |..|...+..+..-..+++|.++|++.  +...+.++.+.. ...+...   .+.++++++||+|+.+.
T Consensus       116 da~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~v~~~---~~~~eav~~aDIV~taT  190 (301)
T PRK06407        116 NVENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVDIRPV---DNAEAALRDADTITSIT  190 (301)
T ss_pred             CCcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEec
Confidence            3459999998 999998887777655568999999986  344444555421 2234432   46789999999999764


Q ss_pred             C
Q 021932          123 G  123 (305)
Q Consensus       123 g  123 (305)
                      +
T Consensus       191 ~  191 (301)
T PRK06407        191 N  191 (301)
T ss_pred             C
Confidence            3

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.96  E-value=0.1  Score=48.61  Aligned_cols=78  Identities=29%  Similarity=0.400  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEec-CCC---HHHH------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDA------  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a------  111 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|...   ....+.++...  ..++..+.. -+|   .++.      
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dv~d~~~~~~~~~~~~~   86 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAA--GAKAVAVAGDISQRATADELVATAVG   86 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            445899999999999999999999998  899998753   11222233321  122222111 112   1111      


Q ss_pred             hCCCCEEEEcCCCCC
Q 021932          112 LTGMDIVIIPAGVPR  126 (305)
Q Consensus       112 l~~aDiVIi~ag~~~  126 (305)
                      +...|++|.++|...
T Consensus        87 ~g~iD~li~nAG~~~  101 (306)
T PRK07792         87 LGGLDIVVNNAGITR  101 (306)
T ss_pred             hCCCCEEEECCCCCC
Confidence            246899999999754

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.96  E-value=0.032  Score=55.54  Aligned_cols=90  Identities=22%  Similarity=0.214  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch-hhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ..++|+|+|. |.+|..+|..+...|.  +|..+|+++... .+..  +.     .+.    .+++++++.+|+||.+.|
T Consensus       253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~G-----~~~----~~leell~~ADIVI~atG  318 (476)
T PTZ00075        253 AGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--EG-----YQV----VTLEDVVETADIFVTATG  318 (476)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--cC-----cee----ccHHHHHhcCCEEEECCC
Confidence            4469999999 9999999999988887  899998876322 1111  11     111    146788999999999865


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNP  165 (305)
                      .+               .++.  .+.+....|.+++++++-.
T Consensus       319 t~---------------~iI~--~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        319 NK---------------DIIT--LEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             cc---------------cccC--HHHHhccCCCcEEEEcCCC
Confidence            32               1111  1234444588999998754

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=95.94  E-value=0.023  Score=54.31  Aligned_cols=35  Identities=29%  Similarity=0.399  Sum_probs=27.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~   80 (305)
                      ++||+|+||+|.+|..++..|...+...-+.+.|.
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~   36 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR   36 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc
Confidence            47999999999999999998887765433455663

>PRK06483 dihydromonapterin reductase; Provisional

Probab=95.94  E-value=0.11  Score=45.95  Aligned_cols=35  Identities=17%  Similarity=0.107  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ++++.|+||+|.+|..++..|+..|.  +|++.|+++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   36 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH   36 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            34799999999999999999999998  999999865

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=95.93  E-value=0.12  Score=45.63  Aligned_cols=114  Identities=15%  Similarity=0.130  Sum_probs=62.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEec-CCCH---HHH-------hCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQL---EDA-------LTG  114 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~~-t~d~---~~a-------l~~  114 (305)
                      |.|+||+|.+|..++..|++.|.  ++++++...   ......++.+..  .++..+.. -+|.   +++       +..
T Consensus         1 vlItGas~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGF--EICVHYHSGRSDAESVVSAIQAQG--GNARLLQFDVADRVACRTLLEADIAEHGA   76 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46999999999999999999998  888887643   112222333221  12222211 1121   122       234


Q ss_pred             CCEEEEcCCCCCCCC---C---chhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecCCC
Q 021932          115 MDIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISNPV  166 (305)
Q Consensus       115 aDiVIi~ag~~~~~g---~---~r~d~~~~N~~i~~~i~~~I----~~~~p~aiviv~tNPv  166 (305)
                      .|.+|.++|......   .   +....+..|+.....+.+.+    .+..+.+.++++|...
T Consensus        77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~  138 (239)
T TIGR01831        77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVS  138 (239)
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchh
Confidence            689999988643221   1   22345666766555554432    2223455666666543

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.92  E-value=0.023  Score=54.97  Aligned_cols=65  Identities=23%  Similarity=0.294  Sum_probs=43.0

Q ss_pred             HhhhCCCcccc-ccccccccccccCCC------CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           16 AAHLHPPTLQI-EGESSGLGRMDCRAK------GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        16 ~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.|--.|-+++ +.|.--|+|+..-+.      ...+..||.|+|+ |-+|+.++..|+..|+ .+|.++|.+.
T Consensus         4 ~~~~~~~~~~~~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~-GglG~~v~~~La~~Gv-g~i~ivD~D~   75 (370)
T PRK05600          4 SEHTLSPFMQLPTSELRRTARQLALPGFGIEQQERLHNARVLVIGA-GGLGCPAMQSLASAGV-GTITLIDDDT   75 (370)
T ss_pred             cccCCCCCCCCCHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            33444444445 333334555543321      2223458999999 9999999999999987 4999999874

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=95.92  E-value=0.1  Score=49.59  Aligned_cols=94  Identities=30%  Similarity=0.369  Sum_probs=60.4

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +...++++|+|. |.+|+.+|..+.  ++.-+|+.+|..+. .+..+...      .+.+    ++++.++.||+|++.+
T Consensus       143 ~l~gktvGIiG~-GrIG~avA~r~~--~Fgm~v~y~~~~~~-~~~~~~~~------~~y~----~l~ell~~sDii~l~~  208 (324)
T COG1052         143 DLRGKTLGIIGL-GRIGQAVARRLK--GFGMKVLYYDRSPN-PEAEKELG------ARYV----DLDELLAESDIISLHC  208 (324)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHh--cCCCEEEEECCCCC-hHHHhhcC------ceec----cHHHHHHhCCEEEEeC
Confidence            455679999998 999999999987  44449999998652 11111111      1211    3678999999999976


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ..-  + ++|. +  -|.       +.+++-.|.+++||++
T Consensus       209 Plt--~-~T~h-L--in~-------~~l~~mk~ga~lVNta  236 (324)
T COG1052         209 PLT--P-ETRH-L--INA-------EELAKMKPGAILVNTA  236 (324)
T ss_pred             CCC--h-HHhh-h--cCH-------HHHHhCCCCeEEEECC
Confidence            321  1 1211 1  121       3344556889999886

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.90  E-value=0.036  Score=54.49  Aligned_cols=106  Identities=20%  Similarity=0.275  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .+..+|+|+|+ |.+|..++..|...|. .+|.++|++..+.  .++.... ...+..   ..++.+++.++|+||.+.|
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~-~~V~v~~r~~~ra--~~la~~~-g~~~~~---~~~~~~~l~~aDvVI~aT~  251 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKGV-RKITVANRTLERA--EELAEEF-GGEAIP---LDELPEALAEADIVISSTG  251 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCCC-CeEEEEeCCHHHH--HHHHHHc-CCcEee---HHHHHHHhccCCEEEECCC
Confidence            34569999998 9999999998887774 4889999865221  1122211 011111   1355678899999999876


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCCcc
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNST  169 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~tNPvd~l  169 (305)
                      .+... .        +.+.++..   +.+. ....+++=+++|-|+=
T Consensus       252 s~~~~-i--------~~~~l~~~---~~~~~~~~~vviDla~Prdid  286 (423)
T PRK00045        252 APHPI-I--------GKGMVERA---LKARRHRPLLLVDLAVPRDIE  286 (423)
T ss_pred             CCCcE-E--------cHHHHHHH---HhhccCCCeEEEEeCCCCCCc
Confidence            55211 1        11111111   1111 2457888889998874

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.86  E-value=0.04  Score=51.84  Aligned_cols=71  Identities=11%  Similarity=0.146  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      ...+|+|+|+ |..|...+..+.. .++ .+|.++|++.  +...+.++...  ...+.    ..+.++++.++|+||.+
T Consensus       124 ~~~~v~IiGa-G~qa~~~~~al~~~~~~-~~v~v~~r~~~~a~~~a~~~~~~--~~~~~----~~~~~~av~~aDiVita  195 (304)
T PRK07340        124 PPGDLLLIGT-GVQARAHLEAFAAGLPV-RRVWVRGRTAASAAAFCAHARAL--GPTAE----PLDGEAIPEAVDLVVTA  195 (304)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhc--CCeeE----ECCHHHHhhcCCEEEEc
Confidence            4569999998 9999999988865 454 6999999976  23333444321  11222    13577899999999997


Q ss_pred             CC
Q 021932          122 AG  123 (305)
Q Consensus       122 ag  123 (305)
                      ..
T Consensus       196 T~  197 (304)
T PRK07340        196 TT  197 (304)
T ss_pred             cC
Confidence            64

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.85  E-value=0.04  Score=48.53  Aligned_cols=76  Identities=21%  Similarity=0.235  Sum_probs=51.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      -..++|+|||-+.-||..++.+|++.+-  .|.++|++.  .....-.+.|..+  ..+..  +.++.+.++.||+||.+
T Consensus        60 l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t--~~~~~--~~~l~~~~~~ADIVIsA  133 (197)
T cd01079          60 LYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKH--HVTDE--EAMTLDCLSQSDVVITG  133 (197)
T ss_pred             CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCcccccccccccccccc--cccch--hhHHHHHhhhCCEEEEc
Confidence            3456999999988999999999998886  899999865  1111111223211  00000  11256788999999999


Q ss_pred             CCCC
Q 021932          122 AGVP  125 (305)
Q Consensus       122 ag~~  125 (305)
                      +|.+
T Consensus       134 vG~~  137 (197)
T cd01079         134 VPSP  137 (197)
T ss_pred             cCCC
Confidence            9866

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=95.82  E-value=0.041  Score=53.39  Aligned_cols=62  Identities=18%  Similarity=0.279  Sum_probs=45.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ..++|+|||. |.||+.+|..|...|.  +|..+|.....   .  ..     ... +   .++++.++.||+|++...
T Consensus       115 ~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~---~--~~-----~~~-~---~~L~ell~~sDiI~lh~P  176 (378)
T PRK15438        115 HDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD---R--GD-----EGD-F---RSLDELVQEADILTFHTP  176 (378)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc---c--cc-----ccc-c---CCHHHHHhhCCEEEEeCC
Confidence            4559999999 9999999999998888  99999963210   0  00     011 1   257788899999998654

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=95.82  E-value=0.028  Score=53.07  Aligned_cols=71  Identities=18%  Similarity=0.281  Sum_probs=45.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ..+++|+|+ |..+...+..+.. .+ +.+|.++|++.  ++..+.++.+ . ...+...   .+.++++++||+|+.+.
T Consensus       128 ~~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~---~~~~~av~~aDii~taT  200 (313)
T PF02423_consen  128 ARTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV---DSAEEAVRGADIIVTAT  200 (313)
T ss_dssp             --EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE---SSHHHHHTTSSEEEE--
T ss_pred             CceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc-c-cccceec---cchhhhcccCCEEEEcc
Confidence            348999998 9999988876665 55 78999999976  3444556665 2 3345443   46889999999988764


Q ss_pred             C
Q 021932          123 G  123 (305)
Q Consensus       123 g  123 (305)
                      .
T Consensus       201 ~  201 (313)
T PF02423_consen  201 P  201 (313)
T ss_dssp             -
T ss_pred             C
Confidence            3

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=95.79  E-value=0.11  Score=41.71  Aligned_cols=72  Identities=24%  Similarity=0.292  Sum_probs=39.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCCchhhhhhhcccCCce-EEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDTNAV-VRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~-D~~~~~g~~~DL~~~~~~~~-v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ||+|+|++|.+|..++..|...+.+ +++.+ +.++..+......+...... ...+. ..+++  ..++|+||++.+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~DvV~~~~~   74 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE--ELAVDIVFLALP   74 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEechhhcCcCHHHHCcccccccccccc-cCChh--hcCCCEEEEcCC
Confidence            6899998799999999888886433 45444 65432332221122110000 11111 12332  358999999863

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.77  E-value=0.085  Score=47.99  Aligned_cols=35  Identities=23%  Similarity=0.402  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..||.|+|+ |-+|+.++..|+..|+ .+|.++|.+.
T Consensus        24 ~~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence            458999999 9999999999999986 5999999875

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.77  E-value=0.04  Score=47.42  Aligned_cols=56  Identities=30%  Similarity=0.503  Sum_probs=44.4

Q ss_pred             CCCCEEEEEcCCCc-hHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           44 SPGFKVAVLGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        44 ~~~~KI~IIGaaG~-VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ....||.|+|+ |. +|..++..|...+.  +|.++++..                       .++++.+++||+||.+.
T Consensus        42 l~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat   95 (168)
T cd01080          42 LAGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAV   95 (168)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcC
Confidence            44569999999 86 59989999988887  788887531                       24567899999999998


Q ss_pred             CCC
Q 021932          123 GVP  125 (305)
Q Consensus       123 g~~  125 (305)
                      +.+
T Consensus        96 ~~~   98 (168)
T cd01080          96 GKP   98 (168)
T ss_pred             CCC
Confidence            765

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK05599 hypothetical protein; Provisional

Probab=95.77  E-value=0.66  Score=41.55  Aligned_cols=116  Identities=12%  Similarity=0.209  Sum_probs=63.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---H-------HHHhC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---L-------EDALT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~-------~~al~  113 (305)
                      |.+.|+||++-+|..++..|+ .|.  .|++.++++  ++..+.++.... ...+..+. .-.|   .       .+.+.
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~--~Vil~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   76 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGE--DVVLAARRPEAAQGLASDLRQRG-ATSVHVLSFDAQDLDTHRELVKQTQELAG   76 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcc-CCceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence            358899999999999999988 465  899999865  233333443321 11122111 0011   1       12234


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecCCC
Q 021932          114 GMDIVIIPAGVPRKPG---MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISNPV  166 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~r---~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~tNPv  166 (305)
                      ..|++|.++|......   .+.   .+.+..|.    .+.+.+.+.+.+...++.|+++|.-.
T Consensus        77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~  139 (246)
T PRK05599         77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIA  139 (246)
T ss_pred             CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            6899999998643211   111   12223332    33445556665544456677766533

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=95.75  E-value=0.033  Score=52.09  Aligned_cols=96  Identities=17%  Similarity=0.301  Sum_probs=66.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      .++|+.||- |.+|++++..|+..|+  .|+.||++.  ....++.+..  .++.     ..+.|..+++|+||.+.+.|
T Consensus        35 ~~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~--~k~~~f~~~G--a~v~-----~sPaeVae~sDvvitmv~~~  102 (327)
T KOG0409|consen   35 KTRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTK--DKCKEFQEAG--ARVA-----NSPAEVAEDSDVVITMVPNP  102 (327)
T ss_pred             cceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcH--HHHHHHHHhc--hhhh-----CCHHHHHhhcCEEEEEcCCh
Confidence            469999998 9999999999999999  999999864  3344555543  2232     23568899999999987644


Q ss_pred             C----------------CCCCch-hhHHHhhHHHHHHHHHHHHHh
Q 021932          126 R----------------KPGMTR-DDLFNINAGIVKTLCEGIAKC  153 (305)
Q Consensus       126 ~----------------~~g~~r-~d~~~~N~~i~~~i~~~I~~~  153 (305)
                      .                ++|..- .|.-...-...+++.+.+...
T Consensus       103 ~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~  147 (327)
T KOG0409|consen  103 KDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK  147 (327)
T ss_pred             HhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC
Confidence            1                112111 233334456677888887754

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=95.71  E-value=0.045  Score=53.20  Aligned_cols=62  Identities=21%  Similarity=0.229  Sum_probs=45.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ..++|+|||. |.||+.++..+...|.  +|+.+|.....   .  ..     ... +   .++++.++.||+|++...
T Consensus       115 ~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~---~--~~-----~~~-~---~~l~ell~~aDiV~lh~P  176 (381)
T PRK00257        115 AERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQE---A--EG-----DGD-F---VSLERILEECDVISLHTP  176 (381)
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCcccc---c--cc-----Ccc-c---cCHHHHHhhCCEEEEeCc
Confidence            3458999999 9999999999998888  99999974311   0  00     011 1   257788899999999764

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=95.71  E-value=0.021  Score=54.63  Aligned_cols=69  Identities=22%  Similarity=0.420  Sum_probs=45.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ||+|+||+|++|.-++..|..+++ ..+++++-.....|....+..    ..+...  ..+ .++++++|+||++.|
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~----~~~~~~--~~~-~~~~~~~D~v~~a~g   70 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKG----KELEVN--EAK-IESFEGIDIALFSAG   70 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCC----eeEEEE--eCC-hHHhcCCCEEEECCC
Confidence            689999999999999999988554 347777755443333333221    122221  113 256799999999876

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.71  E-value=0.16  Score=47.57  Aligned_cols=118  Identities=16%  Similarity=0.279  Sum_probs=74.1

Q ss_pred             CCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEE-ecC----------C
Q 021932           40 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF-LGQ----------Q  106 (305)
Q Consensus        40 ~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~-~~t----------~  106 (305)
                      +..+.....|.|+||++-+|..+|+.+++.+-  .+++.|+++  ....+..+.+..   .++.+ ..-          .
T Consensus        32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~  106 (300)
T KOG1201|consen   32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAK  106 (300)
T ss_pred             chhhccCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHH
Confidence            44555666899999977899999999999987  999999987  222223333211   11110 000          1


Q ss_pred             CHHHHhCCCCEEEEcCCCC-CCCC--Cchhh---HHHhh----HHHHHHHHHHHHHhCCCcEEEEec
Q 021932          107 QLEDALTGMDIVIIPAGVP-RKPG--MTRDD---LFNIN----AGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       107 d~~~al~~aDiVIi~ag~~-~~~g--~~r~d---~~~~N----~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ..++...+.|++|..||+. .++.  .++.+   .++.|    .-+++.+.+.+.+.+ ++.|+.++
T Consensus       107 ~Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~Ia  172 (300)
T KOG1201|consen  107 KVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIA  172 (300)
T ss_pred             HHHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEeh
Confidence            2345667999999999963 3332  22222   12233    457888999998765 55555554

>PRK06436 glycerate dehydrogenase; Provisional

Probab=95.70  E-value=0.047  Score=51.43  Aligned_cols=96  Identities=20%  Similarity=0.261  Sum_probs=62.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ...++|+|+|- |.+|+.+|..+...|.  +|+.+|.....       + . ..  ...   .++++.++.||+|+++..
T Consensus       120 L~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~-------~-~-~~--~~~---~~l~ell~~aDiv~~~lp  182 (303)
T PRK06436        120 LYNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN-------D-G-IS--SIY---MEPEDIMKKSDFVLISLP  182 (303)
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc-------c-C-cc--ccc---CCHHHHHhhCCEEEECCC
Confidence            34569999998 9999999988877787  99999975311       0 0 00  001   257788999999999863


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCcc
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNST  169 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~l  169 (305)
                      ..  + +++. ++  |       .+.+....|.+++|+++  .++|.-
T Consensus       183 ~t--~-~T~~-li--~-------~~~l~~mk~ga~lIN~sRG~~vd~~  217 (303)
T PRK06436        183 LT--D-ETRG-MI--N-------SKMLSLFRKGLAIINVARADVVDKN  217 (303)
T ss_pred             CC--c-hhhc-Cc--C-------HHHHhcCCCCeEEEECCCccccCHH
Confidence            21  1 1111 11  1       23344445889999996  667653

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.70  E-value=0.12  Score=47.22  Aligned_cols=35  Identities=26%  Similarity=0.420  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..||+|+|+ |.+|+.++..|+..|+ .++.++|-+.
T Consensus        32 ~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   66 (245)
T PRK05690         32 AARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT   66 (245)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            458999999 9999999999999997 5999999864

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.69  E-value=0.056  Score=51.06  Aligned_cols=72  Identities=17%  Similarity=0.249  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      ...+|+|||+ |.+|...+..+.. .+ ..+|.++|+++  +...+.++.+.  ...+...   .+.++++++||+|+.+
T Consensus       124 ~~~~v~iiG~-G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~~~---~~~~~av~~aDIVi~a  196 (314)
T PRK06141        124 DASRLLVVGT-GRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRAQ--GFDAEVV---TDLEAAVRQADIISCA  196 (314)
T ss_pred             CCceEEEECC-cHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCceEEe---CCHHHHHhcCCEEEEe
Confidence            4569999998 9999999876554 44 46999999876  23333444331  1123332   3567899999999665


Q ss_pred             CC
Q 021932          122 AG  123 (305)
Q Consensus       122 ag  123 (305)
                      .+
T Consensus       197 T~  198 (314)
T PRK06141        197 TL  198 (314)
T ss_pred             eC
Confidence            43

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.65  E-value=0.029  Score=53.08  Aligned_cols=69  Identities=13%  Similarity=0.211  Sum_probs=48.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCC-CCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVV-NTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~-~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .++|+| ||+|.||..+...|.++++ .++++|++.. ...|+...+..    ..+.... .+  ++++++.|++++ +|
T Consensus         3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g----~~~~V~~-l~--~~~f~~vDia~f-ag   73 (322)
T PRK06901          3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNN----KAVEQIA-PE--EVEWADFNYVFF-AG   73 (322)
T ss_pred             cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECC----EEEEEEE-CC--ccCcccCCEEEE-cC
Confidence            358999 9999999999999988885 6899999886 34443332221    2333221 11  357899999999 65

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.63  E-value=0.31  Score=46.55  Aligned_cols=143  Identities=17%  Similarity=0.196  Sum_probs=79.8

Q ss_pred             ccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecC
Q 021932           27 EGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQ  105 (305)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t  105 (305)
                      |+-.-.|+-.--...  .+..+|+|+|+ |-+|....+.+...+.  +|+.+|+++. ...+.+|.-   ..-+. .. .
T Consensus       150 CaGiT~y~alk~~~~--~pG~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lGA---d~~i~-~~-~  219 (339)
T COG1064         150 CAGITTYRALKKANV--KPGKWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLGA---DHVIN-SS-D  219 (339)
T ss_pred             cCeeeEeeehhhcCC--CCCCEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhCC---cEEEE-cC-C
Confidence            655544544333222  22359999999 9888888888777885  9999999763 222333321   11111 11 1


Q ss_pred             CCHHHHhCC-CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-CccHHH-HHHHHHHhCC
Q 021932          106 QQLEDALTG-MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-NSTVPI-AAEVFKKVGT  182 (305)
Q Consensus       106 ~d~~~al~~-aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv-d~lt~~-~~~~~~~~s~  182 (305)
                      .|..+++++ +|+||.|++ +               .-+.++.+.+   .+++.++.+.+|- ..+..+ ...+     -
T Consensus       220 ~~~~~~~~~~~d~ii~tv~-~---------------~~~~~~l~~l---~~~G~~v~vG~~~~~~~~~~~~~~l-----i  275 (339)
T COG1064         220 SDALEAVKEIADAIIDTVG-P---------------ATLEPSLKAL---RRGGTLVLVGLPGGGPIPLLPAFLL-----I  275 (339)
T ss_pred             chhhHHhHhhCcEEEECCC-h---------------hhHHHHHHHH---hcCCEEEEECCCCCcccCCCCHHHh-----h
Confidence            233344443 999999986 3               1133333333   4788999999994 332211 1111     1


Q ss_pred             CCCCcEEEe---eehhhHHHHHHH
Q 021932          183 YDPKRLLGV---TMLDVVRANTFV  203 (305)
Q Consensus       183 ~p~~kviG~---t~Lds~R~~~~l  203 (305)
                      +...+|.|+   +.-|+..+-.+.
T Consensus       276 ~~~~~i~GS~~g~~~d~~e~l~f~  299 (339)
T COG1064         276 LKEISIVGSLVGTRADLEEALDFA  299 (339)
T ss_pred             hcCeEEEEEecCCHHHHHHHHHHH
Confidence            345788898   345544444433

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.62  E-value=0.057  Score=51.24  Aligned_cols=73  Identities=15%  Similarity=0.205  Sum_probs=49.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ..+++|||+ |..|...+..|....-+.+|.+++++..  ...+.++.+.. ...+..   ..++++++++||+|+.+.+
T Consensus       129 ~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~---~~~~~~av~~aDiVvtaT~  203 (326)
T TIGR02992       129 SSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-GIDVTA---ATDPRAAMSGADIIVTTTP  203 (326)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-CceEEE---eCCHHHHhccCCEEEEecC
Confidence            458999998 9999998888864333469999999763  33334443221 122322   2467889999999999754

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK06484 short chain dehydrogenase; Validated

Probab=95.60  E-value=0.085  Score=52.66  Aligned_cols=35  Identities=29%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+.+.|+||++.+|..++..|+..|.  .|+++|++.
T Consensus         5 ~k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~   39 (520)
T PRK06484          5 SRVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNV   39 (520)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            34788999999999999999999998  899999865

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.59  E-value=0.1  Score=46.03  Aligned_cols=35  Identities=23%  Similarity=0.394  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..||.|+|+ |-+|+.++..|+..|+ .+|.++|.+.
T Consensus        19 ~s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~   53 (198)
T cd01485          19 SAKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL   53 (198)
T ss_pred             hCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            358999999 8899999999999998 4899999764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.59  E-value=0.0068  Score=51.90  Aligned_cols=45  Identities=33%  Similarity=0.311  Sum_probs=34.6

Q ss_pred             cccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           34 GRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        34 ~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..+.+.+ ...++.||+|+|+ |.||...+..+...|.  +++.+|...
T Consensus         9 ~~~~~~~-~~~~p~~vvv~G~-G~vg~gA~~~~~~lGa--~v~~~d~~~   53 (168)
T PF01262_consen    9 GMLLGGP-GGVPPAKVVVTGA-GRVGQGAAEIAKGLGA--EVVVPDERP   53 (168)
T ss_dssp             SHEECTT-TEE-T-EEEEEST-SHHHHHHHHHHHHTT---EEEEEESSH
T ss_pred             ceeccCC-CCCCCeEEEEECC-CHHHHHHHHHHhHCCC--EEEeccCCH
Confidence            3344444 6777889999998 9999999999999998  999999865

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06484 short chain dehydrogenase; Validated

Probab=95.59  E-value=0.25  Score=49.29  Aligned_cols=116  Identities=17%  Similarity=0.231  Sum_probs=65.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEE-EecCCCHHHH-------hCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRG-FLGQQQLEDA-------LTGM  115 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~-~~~t~d~~~a-------l~~a  115 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...  ...+.. +....+.++.       +...
T Consensus       269 ~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        269 PRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGDE--HLSVQADITDEAAVESAFAQIQARWGRL  344 (520)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc--eeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999997  8999998651  1111111110  001111 1000112222       2457


Q ss_pred             CEEEEcCCCCC--CC--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 021932          116 DIVIIPAGVPR--KP--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (305)
Q Consensus       116 DiVIi~ag~~~--~~--g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNP  165 (305)
                      |++|.+||...  .+  ..+   ....+..|+.....+.+.+..+- ..+.|+++|.-
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~  402 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSI  402 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECch
Confidence            99999999742  11  112   23345666665555555544432 34667777653

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.59  E-value=0.17  Score=52.05  Aligned_cols=138  Identities=14%  Similarity=0.198  Sum_probs=82.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCH---H-HHhCCCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL---E-DALTGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~---~-~al~~aDiVIi~  121 (305)
                      ..+|.|+|. |.+|+.++..|..+++  +++++|.|+..  +..+.+.. .+-+.+  ..++.   + ..+++||.+|++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g-~~v~~G--Dat~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISA--VNLMRKYG-YKVYYG--DATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhCC-CeEEEe--eCCCHHHHHhcCCccCCEEEEE
Confidence            468999999 9999999999998888  99999998621  12222221 122222  11232   1 124689999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE-ecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHH
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN  200 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv-~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~  200 (305)
                      .+..           +.|    ..++..+++..|+..++. +.||.+.      +.+++. |  .+.|+-=+..-+.++-
T Consensus       472 ~~d~-----------~~n----~~i~~~~r~~~p~~~IiaRa~~~~~~------~~L~~~-G--a~~vv~e~~es~l~l~  527 (601)
T PRK03659        472 CNEP-----------EDT----MKIVELCQQHFPHLHILARARGRVEA------HELLQA-G--VTQFSRETFSSALELG  527 (601)
T ss_pred             eCCH-----------HHH----HHHHHHHHHHCCCCeEEEEeCCHHHH------HHHHhC-C--CCEEEccHHHHHHHHH
Confidence            5311           223    345666778889876554 4566543      233433 3  2445433433344555


Q ss_pred             HHHHHHhCCCCccee
Q 021932          201 TFVAEVLGLDPREVD  215 (305)
Q Consensus       201 ~~la~~l~v~~~~V~  215 (305)
                      ...=..+|++++++.
T Consensus       528 ~~~L~~lg~~~~~~~  542 (601)
T PRK03659        528 RKTLVSLGMHPHQAQ  542 (601)
T ss_pred             HHHHHHcCCCHHHHH
Confidence            555577788887774

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.58  E-value=0.078  Score=45.33  Aligned_cols=56  Identities=30%  Similarity=0.486  Sum_probs=40.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      +.+||+|||.++.||..++.+|..++.  .+.+++.+                       +.++++.++.||+||.++|.
T Consensus        35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G~   89 (160)
T PF02882_consen   35 EGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVGK   89 (160)
T ss_dssp             TT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SSS
T ss_pred             CCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeecc
Confidence            345999999988999999999998865  55555432                       23567888999999999986


Q ss_pred             C
Q 021932          125 P  125 (305)
Q Consensus       125 ~  125 (305)
                      |
T Consensus        90 ~   90 (160)
T PF02882_consen   90 P   90 (160)
T ss_dssp             T
T ss_pred             c
Confidence            5

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=95.58  E-value=0.13  Score=47.24  Aligned_cols=74  Identities=20%  Similarity=0.225  Sum_probs=42.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      ++||+|.||+|.||+.+...+.+.+...=+..+|.....-.-.|..+......+... .+.|+.....++|++|=
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~-v~~~~~~~~~~~DV~ID   75 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVP-VTDDLLLVKADADVLID   75 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCce-eecchhhcccCCCEEEE
Confidence            679999999999999999999887744344556665411111122221111111111 12234566788888775

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.57  E-value=0.046  Score=52.39  Aligned_cols=74  Identities=23%  Similarity=0.309  Sum_probs=45.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhhhh-hh-c-----ccC-CceEEEEecCCCHHHHhCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD-IS-H-----MDT-NAVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~D-L~-~-----~~~-~~~v~~~~~t~d~~~al~~a  115 (305)
                      +++||+|+||+|++|+.++..|..++.. ||++++..+ ..|+... +. +     ... ...+... . .+. +.++++
T Consensus         2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~-el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~-~-~~~-~~~~~~   77 (349)
T PRK08664          2 MKLKVGILGATGMVGQRFVQLLANHPWF-EVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVV-S-TDP-EAVDDV   77 (349)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEcChhhcCCcccccccccccccccccccceEEE-e-CCH-HHhcCC
Confidence            3579999999999999999988877654 888884433 2332221 10 1     000 1122221 1 243 567899


Q ss_pred             CEEEEcC
Q 021932          116 DIVIIPA  122 (305)
Q Consensus       116 DiVIi~a  122 (305)
                      |+|+.+.
T Consensus        78 DvVf~a~   84 (349)
T PRK08664         78 DIVFSAL   84 (349)
T ss_pred             CEEEEeC
Confidence            9998864

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.55  E-value=0.11  Score=46.22  Aligned_cols=70  Identities=19%  Similarity=0.140  Sum_probs=48.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .+||.|||+ |.+|..-+..|+..|-  .|.+++.+.. ....++...   .++.......+ .+.++++|+||.+.+
T Consensus         9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~-~~l~~l~~~---~~i~~~~~~~~-~~dl~~~~lVi~at~   78 (205)
T TIGR01470         9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELE-SELTLLAEQ---GGITWLARCFD-ADILEGAFLVIAATD   78 (205)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCC-HHHHHHHHc---CCEEEEeCCCC-HHHhCCcEEEEECCC
Confidence            349999999 9999999999998887  8999987532 222233322   23443322323 367899999998854

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=95.51  E-value=0.2  Score=47.71  Aligned_cols=125  Identities=16%  Similarity=0.312  Sum_probs=69.6

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhC----C-CCcEEEEEeCCC-Cchhhhhhhcc------c--------CCceEEE
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKIN----P-LVSVLHLYDVVN-TPGVTADISHM------D--------TNAVVRG  101 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~----~-~~~el~L~D~~~-~~g~~~DL~~~------~--------~~~~v~~  101 (305)
                      +...+.||+|||+ |+=|+++|..+...    + +..+|...-..+ ..+...-|.+.      .        ...++..
T Consensus        17 ~~~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvA   95 (372)
T KOG2711|consen   17 AERDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVA   95 (372)
T ss_pred             hhcCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEe
Confidence            4455679999998 99999999877643    1 223455444333 23321111111      0        1123333


Q ss_pred             EecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCc-----cHHHHHH
Q 021932          102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS-----TVPIAAE  175 (305)
Q Consensus       102 ~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~-----lt~~~~~  175 (305)
                         .+|+.++++|||++|+..  |              .+.+.+++++|..+- |++..|-.+.=++.     -.-++|+
T Consensus        96 ---v~dl~ea~~dADilvf~v--P--------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~  156 (372)
T KOG2711|consen   96 ---VPDLVEAAKDADILVFVV--P--------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQ  156 (372)
T ss_pred             ---cchHHHHhccCCEEEEeC--C--------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHH
Confidence               468999999999999974  2              234556666776664 55555444322221     0112345


Q ss_pred             HHHHhCCCCCC
Q 021932          176 VFKKVGTYDPK  186 (305)
Q Consensus       176 ~~~~~s~~p~~  186 (305)
                      .+.+..|.|-.
T Consensus       157 iI~~~lgI~~~  167 (372)
T KOG2711|consen  157 IIHRALGIPCS  167 (372)
T ss_pred             HHHHHhCCCce
Confidence            55556676655

>PRK07041 short chain dehydrogenase; Provisional

Probab=95.48  E-value=0.089  Score=46.22  Aligned_cols=107  Identities=16%  Similarity=0.175  Sum_probs=59.7

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec----CCCHHHHhC---CCCEEEEc
Q 021932           51 VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG----QQQLEDALT---GMDIVIIP  121 (305)
Q Consensus        51 IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~---~aDiVIi~  121 (305)
                      |+||+|.+|..++..|++.|.  +|++++++.  ......++..   ...+..+..    ..++.++++   ..|++|.+
T Consensus         2 ItGas~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~   76 (230)
T PRK07041          2 VVGGSSGIGLALARAFAAEGA--RVTIASRSRDRLAAAARALGG---GAPVRTAALDITDEAAVDAFFAEAGPFDHVVIT   76 (230)
T ss_pred             eecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence            899999999999999999998  899999865  1112222221   111221111    112333333   47999999


Q ss_pred             CCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          122 AGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       122 ag~~~~~g------~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +|......      +.-.+.+..|+.....+.+. ......+.+++++
T Consensus        77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~-~~~~~~g~iv~~s  123 (230)
T PRK07041         77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVARA-ARIAPGGSLTFVS  123 (230)
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhh-hhhcCCeEEEEEC
Confidence            98642211      11233455666666666652 2223344455443

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.48  E-value=0.061  Score=52.06  Aligned_cols=78  Identities=17%  Similarity=0.218  Sum_probs=51.5

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEE
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi  120 (305)
                      .+.++.||+|+|+ |.+|...+..+...|.  +|..+|++..+.  ..+.... ...+.. .....++.+.++++|+||.
T Consensus       163 ~~l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~--~~l~~~~-g~~v~~~~~~~~~l~~~l~~aDvVI~  236 (370)
T TIGR00518       163 PGVEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRL--RQLDAEF-GGRIHTRYSNAYEIEDAVKRADLLIG  236 (370)
T ss_pred             CCCCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHhc-CceeEeccCCHHHHHHHHccCCEEEE
Confidence            3446678999999 9999999999998887  799999865211  1111110 111111 1111346678899999999


Q ss_pred             cCCCC
Q 021932          121 PAGVP  125 (305)
Q Consensus       121 ~ag~~  125 (305)
                      +++.+
T Consensus       237 a~~~~  241 (370)
T TIGR00518       237 AVLIP  241 (370)
T ss_pred             ccccC
Confidence            98654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=95.47  E-value=0.16  Score=48.63  Aligned_cols=55  Identities=13%  Similarity=0.034  Sum_probs=36.4

Q ss_pred             HHHHHHHHHhCCCCcEEEEEeCCCCc--h-hhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           59 GQPLAMLMKINPLVSVLHLYDVVNTP--G-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        59 Gs~la~~L~~~~~~~el~L~D~~~~~--g-~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |..+|..|+..|+  +|+++|+++..  . ....+...    .++.   +++..+++++||+||++.
T Consensus        32 G~~MA~~La~aG~--~V~v~Dr~~~~l~~~~~~~l~~~----Gi~~---asd~~eaa~~ADvVIlaV   89 (342)
T PRK12557         32 GSRMAIEFAEAGH--DVVLAEPNRSILSEELWKKVEDA----GVKV---VSDDAEAAKHGEIHILFT   89 (342)
T ss_pred             HHHHHHHHHhCCC--eEEEEECCHHHhhHHHHHHHHHC----CCEE---eCCHHHHHhCCCEEEEEC
Confidence            7788989999998  99999987621  1 11112211    1332   235568889999999985

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=95.46  E-value=0.074  Score=50.51  Aligned_cols=93  Identities=23%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~-~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ...++|+|||. |.+|..+|..+. .-|.  +|+.+|..... ...  ...    .++.    .++++.++.||+|++..
T Consensus       143 L~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~-~~~--~~~----~~~~----~~l~ell~~sDvv~lh~  208 (323)
T PRK15409        143 VHHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHK-EAE--ERF----NARY----CDLDTLLQESDFVCIIL  208 (323)
T ss_pred             CCCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCch-hhH--Hhc----CcEe----cCHHHHHHhCCEEEEeC
Confidence            44569999999 999999998886 4555  88888864311 111  000    1121    25788999999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ...  + +++. ++  |.       +.+++-.|++++||++
T Consensus       209 plt--~-~T~~-li--~~-------~~l~~mk~ga~lIN~a  236 (323)
T PRK15409        209 PLT--D-ETHH-LF--GA-------EQFAKMKSSAIFINAG  236 (323)
T ss_pred             CCC--h-HHhh-cc--CH-------HHHhcCCCCeEEEECC
Confidence            321  1 1111 11  21       2334445899999986

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.42  E-value=0.12  Score=49.22  Aligned_cols=64  Identities=25%  Similarity=0.352  Sum_probs=46.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      .++|+|||. |.+|+.+|..+..-|.  +|..||.........  .+     ....   ..++++-++.||+|++..
T Consensus       142 gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~--~~-----~~~~---~~~Ld~lL~~sDiv~lh~  205 (324)
T COG0111         142 GKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG--VD-----GVVG---VDSLDELLAEADILTLHL  205 (324)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc--cc-----ccee---cccHHHHHhhCCEEEEcC
Confidence            569999999 9999999999998898  999999833111100  11     1111   135788999999999975

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=95.39  E-value=0.12  Score=47.60  Aligned_cols=95  Identities=17%  Similarity=0.164  Sum_probs=56.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEE-EEeCCCCchhhhhhhcccCCceEEEEecCCCHHHH-hCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA-LTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~-L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~a-l~~aDiVIi~a  122 (305)
                      .+||+|||. |.+|..++..|..... .-+++ ++|.+.  .....+...     ...   .+|+++- ....|+||.||
T Consensus         2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~~~-----~~~---~~~l~~ll~~~~DlVVE~A   70 (267)
T PRK13301          2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALAGR-----VAL---LDGLPGLLAWRPDLVVEAA   70 (267)
T ss_pred             ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhhcc-----Ccc---cCCHHHHhhcCCCEEEECC
Confidence            469999998 9999999998876532 12443 455432  122222221     111   1356442 38899999998


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                      +                ...++++++.+-+.+.|-+++-++==.|
T Consensus        71 ~----------------~~av~e~~~~iL~~g~dlvv~SvGALaD   99 (267)
T PRK13301         71 G----------------QQAIAEHAEGCLTAGLDMIICSAGALAD   99 (267)
T ss_pred             C----------------HHHHHHHHHHHHhcCCCEEEEChhHhcC
Confidence            6                3557777777776666655544333333

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.38  E-value=0.18  Score=49.89  Aligned_cols=127  Identities=17%  Similarity=0.219  Sum_probs=71.3

Q ss_pred             CCCEEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~-la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +.+||.|+|. |-.|.+ +|..|...|.  +|...|.+... ...+|...    .+..+.+. + .+.+.++|+||.+.|
T Consensus         6 ~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~----gi~~~~~~-~-~~~~~~~d~vv~spg   75 (461)
T PRK00421          6 RIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLEL----GAIIFIGH-D-AENIKDADVVVYSSA   75 (461)
T ss_pred             CCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHC----CCEEeCCC-C-HHHCCCCCEEEECCC
Confidence            3458999999 999999 7999999998  99999986532 12234332    12222222 3 366889999999998


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe--cCCCCccHHHHHHHHHHhCCCC
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI--SNPVNSTVPIAAEVFKKVGTYD  184 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~--tNPvd~lt~~~~~~~~~~s~~p  184 (305)
                      +|.... ......+.+++++.+.- .+.+..++..+|-+  ||==...|.++.++++.. |++
T Consensus        76 i~~~~~-~~~~a~~~~i~i~~~~e-~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~-g~~  135 (461)
T PRK00421         76 IPDDNP-ELVAARELGIPVVRRAE-MLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEA-GLD  135 (461)
T ss_pred             CCCCCH-HHHHHHHCCCcEEeHHH-HHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhc-CCC
Confidence            874321 11122233445443311 11122111123334  444445666666666543 443

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=95.37  E-value=0.1  Score=46.93  Aligned_cols=72  Identities=17%  Similarity=0.135  Sum_probs=49.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE--EecCCCHHHHhCCCCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ++|.|+||+|++|+++...|+..++  +|+..-++......+.   .  ...+..  ......+..+++|.|.++++.+.
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~~---~--~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~   73 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAALA---G--GVEVVLGDLRDPKSLVAGAKGVDGVLLISGL   73 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhhc---C--CcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence            5899999999999999999999987  8887776652222222   1  111111  22234567888999999998764


Q ss_pred             C
Q 021932          125 P  125 (305)
Q Consensus       125 ~  125 (305)
                      .
T Consensus        74 ~   74 (275)
T COG0702          74 L   74 (275)
T ss_pred             c
Confidence            3

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.37  E-value=0.057  Score=50.18  Aligned_cols=104  Identities=20%  Similarity=0.216  Sum_probs=46.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhhhhhhc--ccCCceEEEEecC-CCHHHHhCCCCEEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISH--MDTNAVVRGFLGQ-QQLEDALTGMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~--~~~~~~v~~~~~t-~d~~~al~~aDiVIi  120 (305)
                      .+.||+.||. |.+-.+........+....+.-+|+++ +...+..+..  .....++.+..+. .+...++++.|+|++
T Consensus       120 ~p~rVaFIGS-GPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l  198 (276)
T PF03059_consen  120 PPSRVAFIGS-GPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL  198 (276)
T ss_dssp             ---EEEEE----SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred             ccceEEEEcC-CCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence            3459999998 998777655554444444788999987 3333322222  1112344443221 233345789999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEE
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNL  161 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv  161 (305)
                      ++=+.    ++        .+-..++.+.+.++. |++.+++
T Consensus       199 AalVg----~~--------~e~K~~Il~~l~~~m~~ga~l~~  228 (276)
T PF03059_consen  199 AALVG----MD--------AEPKEEILEHLAKHMAPGARLVV  228 (276)
T ss_dssp             -TT-S----------------SHHHHHHHHHHHS-TTSEEEE
T ss_pred             hhhcc----cc--------cchHHHHHHHHHhhCCCCcEEEE
Confidence            87332    22        223555666666665 5666554

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.35  E-value=0.26  Score=41.82  Aligned_cols=67  Identities=10%  Similarity=0.062  Sum_probs=44.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +.+||.|+|+ |.||...+..|+..|.  +|++++.... ....++..      +......-. ++.++++|+||.+.
T Consensus        12 ~~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~-~~l~~l~~------i~~~~~~~~-~~dl~~a~lViaaT   78 (157)
T PRK06719         12 HNKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEIC-KEMKELPY------ITWKQKTFS-NDDIKDAHLIYAAT   78 (157)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccC-HHHHhccC------cEEEecccC-hhcCCCceEEEECC
Confidence            4469999999 9999999999999888  8999974322 12222211      111111112 35689999999874

>PLN00203 glutamyl-tRNA reductase

Probab=95.34  E-value=0.084  Score=53.37  Aligned_cols=107  Identities=15%  Similarity=0.125  Sum_probs=64.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ...||+|||+ |.+|..++..|...|. .+|.+++++.....  .+........+... ...++.+++.++|+||.+.+.
T Consensus       265 ~~kkVlVIGA-G~mG~~~a~~L~~~G~-~~V~V~nRs~era~--~La~~~~g~~i~~~-~~~dl~~al~~aDVVIsAT~s  339 (519)
T PLN00203        265 ASARVLVIGA-GKMGKLLVKHLVSKGC-TKMVVVNRSEERVA--ALREEFPDVEIIYK-PLDEMLACAAEADVVFTSTSS  339 (519)
T ss_pred             CCCEEEEEeC-HHHHHHHHHHHHhCCC-CeEEEEeCCHHHHH--HHHHHhCCCceEee-cHhhHHHHHhcCCEEEEccCC
Confidence            3569999999 9999999999888775 47999998752221  12211001112211 123566889999999988654


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHh----CCCcEEEEecCCCCcc
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKC----CPKAIVNLISNPVNST  169 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~----~p~aiviv~tNPvd~l  169 (305)
                      +..             -+.++.++.+.+.    ...-++|=++.|=|+=
T Consensus       340 ~~p-------------vI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdId  375 (519)
T PLN00203        340 ETP-------------LFLKEHVEALPPASDTVGGKRLFVDISVPRNVG  375 (519)
T ss_pred             CCC-------------eeCHHHHHHhhhcccccCCCeEEEEeCCCCCCc
Confidence            421             1123333333221    1224677889998763

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.31  E-value=0.097  Score=52.76  Aligned_cols=106  Identities=17%  Similarity=0.255  Sum_probs=63.9

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhhhhhhccc--CCc-e--------EEEEecCCCH-
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMD--TNA-V--------VRGFLGQQQL-  108 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~--~~~-~--------v~~~~~t~d~-  108 (305)
                      +..++.||.|+|+ |.+|...+..+...|-  +|+.+|+++ ....+..+.-..  ... .        .+..  +.++ 
T Consensus       161 G~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~--s~~~~  235 (509)
T PRK09424        161 GKVPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVM--SEEFI  235 (509)
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhc--chhHH
Confidence            4556779999999 9999999988888886  799999976 222222221100  000 0        0000  1121 


Q ss_pred             -------HHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHH-HHHHHHHHHHhCCCcEEEEecCC
Q 021932          109 -------EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI-VKTLCEGIAKCCPKAIVNLISNP  165 (305)
Q Consensus       109 -------~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i-~~~i~~~I~~~~p~aiviv~tNP  165 (305)
                             .+.++++|+||.|+|.|.++..          .. .++.++.++   |.+.|+.++-+
T Consensus       236 ~~~~~~~~~~~~gaDVVIetag~pg~~aP----------~lit~~~v~~mk---pGgvIVdvg~~  287 (509)
T PRK09424        236 KAEMALFAEQAKEVDIIITTALIPGKPAP----------KLITAEMVASMK---PGSVIVDLAAE  287 (509)
T ss_pred             HHHHHHHHhccCCCCEEEECCCCCcccCc----------chHHHHHHHhcC---CCCEEEEEccC
Confidence                   2224789999999998753211          12 244444444   78888777754

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=95.31  E-value=0.23  Score=40.77  Aligned_cols=112  Identities=23%  Similarity=0.174  Sum_probs=63.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chh---hhhhhcccCCceEEEEec-CCC---HHHHh------
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGV---TADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~---~~DL~~~~~~~~v~~~~~-t~d---~~~al------  112 (305)
                      ++.|+||+|.+|..++..|.+++. ..+++.+.++.  ...   ..++...  ..++..+.. -++   +++.+      
T Consensus         2 ~~li~Ga~~~iG~~~~~~l~~~g~-~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (180)
T smart00822        2 TYLITGGLGGLGLELARWLAERGA-RHLVLLSRSGPDAPGAAELLAELEAL--GAEVTVVACDVADRAALAAALAAIPAR   78 (180)
T ss_pred             EEEEEcCCChHHHHHHHHHHHhhC-CeEEEEeCCCCCCccHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999988775 25677776542  111   1222221  112222111 111   12222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                       ...|.+|.++|......   .+   -..++..|+.....+.+.+.+..+.. ++++|
T Consensus        79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-ii~~s  135 (180)
T smart00822       79 LGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDF-FVLFS  135 (180)
T ss_pred             cCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcce-EEEEc
Confidence             33599999998542111   11   23446677777888888776655443 44444

It uses NADPH to reduce the keto group to a hydroxy group.

>PRK08223 hypothetical protein; Validated

Probab=95.29  E-value=0.08  Score=49.46  Aligned_cols=35  Identities=20%  Similarity=0.252  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..||.|+|+ |-+|+.++..|+..|+. +|.|+|-+.
T Consensus        27 ~s~VlIvG~-GGLGs~va~~LA~aGVG-~i~lvD~D~   61 (287)
T PRK08223         27 NSRVAIAGL-GGVGGIHLLTLARLGIG-KFTIADFDV   61 (287)
T ss_pred             cCCEEEECC-CHHHHHHHHHHHHhCCC-eEEEEeCCC
Confidence            458999999 99999999999999984 999999874

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.26  E-value=0.13  Score=50.45  Aligned_cols=72  Identities=19%  Similarity=0.205  Sum_probs=45.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEE-ecCCCHHHH-hCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF-LGQQQLEDA-LTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~-~~t~d~~~a-l~~aDiVIi~ag  123 (305)
                      |||.|+|+ |.+|..++..|...++  +++++|.++...  ..+.......-+.+- .....++++ ++++|.||++.+
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~~--~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~   74 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEERL--RRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTD   74 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHHH--HHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence            58999999 9999999999998888  999999876211  112110000111110 001123444 789999999853

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.26  E-value=0.67  Score=41.49  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=29.8

Q ss_pred             CCCEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCC
Q 021932           45 PGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVV   81 (305)
Q Consensus        45 ~~~KI~IIGaaG--~VGs~la~~L~~~~~~~el~L~D~~   81 (305)
                      +.++|.|+||+|  .+|..++..|+..|.  +|++++++
T Consensus         4 ~~k~vlItGas~~~giG~~la~~l~~~G~--~vi~~~r~   40 (256)
T PRK12748          4 MKKIALVTGASRLNGIGAAVCRRLAAKGI--DIFFTYWS   40 (256)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHcCC--cEEEEcCC
Confidence            345899999974  699999999999997  89999876

>PLN02306 hydroxypyruvate reductase

Probab=95.25  E-value=0.12  Score=50.43  Aligned_cols=102  Identities=22%  Similarity=0.272  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCCchhh---hhhhc---ccCCceEEEEecCCCHHHHhCCCCE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVT---ADISH---MDTNAVVRGFLGQQQLEDALTGMDI  117 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~-~~~~~~el~L~D~~~~~g~~---~DL~~---~~~~~~v~~~~~t~d~~~al~~aDi  117 (305)
                      ..++|+|+|. |.+|+.+|..+. ..|.  +|..||........   .....   .......... ...++++.++.||+
T Consensus       164 ~gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~L~ell~~sDi  239 (386)
T PLN02306        164 KGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWK-RASSMEEVLREADV  239 (386)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhccccccccccccccc-ccCCHHHHHhhCCE
Confidence            4469999998 999999998875 4566  99999975421110   01100   0000011110 12368899999999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       118 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |++....-  + +++        .++..  +.++.-.|++++||++
T Consensus       240 V~lh~Plt--~-~T~--------~lin~--~~l~~MK~ga~lIN~a  272 (386)
T PLN02306        240 ISLHPVLD--K-TTY--------HLINK--ERLALMKKEAVLVNAS  272 (386)
T ss_pred             EEEeCCCC--h-hhh--------hhcCH--HHHHhCCCCeEEEECC
Confidence            99975321  1 111        11111  3344445889999987

>PRK07589 ornithine cyclodeaminase; Validated

Probab=95.24  E-value=0.076  Score=50.97  Aligned_cols=73  Identities=18%  Similarity=0.278  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ...+++|||+ |..+...+..+..---+.+|.++|++.  +...+.++.+.  ..++..   ..+.++++++||+|+.+.
T Consensus       128 da~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIIvtaT  201 (346)
T PRK07589        128 DSRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA---CRSVAEAVEGADIITTVT  201 (346)
T ss_pred             CCcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE---eCCHHHHHhcCCEEEEec
Confidence            4568999998 999988876665443468999999986  33444455442  123433   246889999999999865


Q ss_pred             C
Q 021932          123 G  123 (305)
Q Consensus       123 g  123 (305)
                      .
T Consensus       202 ~  202 (346)
T PRK07589        202 A  202 (346)
T ss_pred             C
Confidence            3

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=95.23  E-value=0.066  Score=46.66  Aligned_cols=114  Identities=23%  Similarity=0.231  Sum_probs=75.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceE----EEEecCCCHHHHhCCCCEEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV----RGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v----~~~~~t~d~~~al~~aDiVIi  120 (305)
                      +++...|+||+|.+|..+...+...+.++.|+++-+.++       -+..+...+    ..++.-.++.+++++-|+-+.
T Consensus        17 q~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~-------~d~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~Fc   89 (238)
T KOG4039|consen   17 QNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRREL-------PDPATDKVVAQVEVDFSKLSQLATNEQGPDVLFC   89 (238)
T ss_pred             hccceEEEeccccccHHHHHHHHhcccceeEEEEEeccC-------CCccccceeeeEEechHHHHHHHhhhcCCceEEE
Confidence            345788999999999999999999999999999987641       111111111    112112356788999999998


Q ss_pred             cCCCCC-CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          121 PAGVPR-KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       121 ~ag~~~-~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                      +-|.-| +.|-+  .+.+..-+.+.+.++..++.+-+-++++.|--.|
T Consensus        90 aLgTTRgkaGad--gfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd  135 (238)
T KOG4039|consen   90 ALGTTRGKAGAD--GFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGAD  135 (238)
T ss_pred             eecccccccccC--ceEeechHHHHHHHHHHHhCCCeEEEEEeccCCC
Confidence            877543 33321  1223344667777777777777788887765444

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.22  E-value=0.068  Score=49.88  Aligned_cols=56  Identities=23%  Similarity=0.430  Sum_probs=43.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      +.++|+|+|++|.+|..+++.|+..+.  +|.+++..                       +.++.+.+++||+||.+.|.
T Consensus       158 ~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~-----------------------t~~L~~~~~~aDIvI~AtG~  212 (283)
T PRK14192        158 AGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR-----------------------TQNLPELVKQADIIVGAVGK  212 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC-----------------------chhHHHHhccCCEEEEccCC
Confidence            456999999944599999999988886  88888641                       12456778999999999874


Q ss_pred             C
Q 021932          125 P  125 (305)
Q Consensus       125 ~  125 (305)
                      |
T Consensus       213 ~  213 (283)
T PRK14192        213 P  213 (283)
T ss_pred             C
Confidence            4

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=95.18  E-value=0.25  Score=55.26  Aligned_cols=118  Identities=13%  Similarity=0.039  Sum_probs=71.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCCchhh-hhhhcc---------cCCceEEEEecC-------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVT-ADISHM---------DTNAVVRGFLGQ-------  105 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~--~~~el~L~D~~~~~g~~-~DL~~~---------~~~~~v~~~~~t-------  105 (305)
                      .+++|.|+||+|++|++++..|+..+  ...+|+.+.+....... ..+.+.         ....++..+.+.       
T Consensus       970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443       970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred             CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence            35799999999999999998888776  33367766664311111 111110         001123332211       


Q ss_pred             ---CCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          106 ---QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       106 ---~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                         ..+.+..+++|+||.+|+... ......++...|+....++++...+...+.++.+.|
T Consensus      1050 l~~~~~~~l~~~~d~iiH~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS 1109 (1389)
T TIGR03443      1050 LSDEKWSDLTNEVDVIIHNGALVH-WVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSS 1109 (1389)
T ss_pred             cCHHHHHHHHhcCCEEEECCcEec-CccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeC
Confidence               124455678999999987542 222334444569999999999988766555555544

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.17  E-value=0.22  Score=49.43  Aligned_cols=123  Identities=14%  Similarity=0.065  Sum_probs=67.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-c-hh-hhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P-GV-TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~-g~-~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +||.|+|+ |.+|..+|..|...|.  +|.++|..+. . .. ...|...    .+....+. +. +...++|+||++.|
T Consensus        17 ~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----gv~~~~~~-~~-~~~~~~D~Vv~s~G   87 (480)
T PRK01438         17 LRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL----GATVRLGP-GP-TLPEDTDLVVTSPG   87 (480)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc----CCEEEECC-Cc-cccCCCCEEEECCC
Confidence            38999999 9999999999999898  8999996541 1 11 1123322    12222222 11 23567999999998


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHH--HHHHHHhCCCcEEEEecCCCC--ccHHHHHHHHHH
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTL--CEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKK  179 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i--~~~I~~~~p~aiviv~tNPvd--~lt~~~~~~~~~  179 (305)
                      ++..... .......+++++.++  +-.+.+...+..+|-+|--..  ..+.+++.+++.
T Consensus        88 i~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~  146 (480)
T PRK01438         88 WRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA  146 (480)
T ss_pred             cCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence            7632211 111123345554332  222221111333455544433  556677666654

>PRK06046 alanine dehydrogenase; Validated

Probab=95.16  E-value=0.083  Score=50.16  Aligned_cols=72  Identities=17%  Similarity=0.235  Sum_probs=49.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ..+|+|||+ |..|...+..+....-+.++.++|+++  +...+.++.+. ....+...   .+++++++ +|+|+++..
T Consensus       129 ~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~~v~~~---~~~~~~l~-aDiVv~aTp  202 (326)
T PRK06046        129 SKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV-VGCDVTVA---EDIEEACD-CDILVTTTP  202 (326)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh-cCceEEEe---CCHHHHhh-CCEEEEecC
Confidence            459999998 999999988787655578999999986  23333334322 12223332   36778786 999999753

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=95.15  E-value=0.23  Score=43.91  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=27.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVV   81 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~-D~~   81 (305)
                      ..+.|+||+|++|..++..|++.|.  +|++. +.+
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~--~v~~~~~~~   35 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGY--TVAVNYQQN   35 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCC
Confidence            3689999999999999999999987  77664 443

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=95.14  E-value=0.36  Score=45.22  Aligned_cols=114  Identities=11%  Similarity=0.031  Sum_probs=64.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCc--hhhhhhhcccCCceEEEEe-cCCC---HHH-------H
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFL-GQQQ---LED-------A  111 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~~--g~~~DL~~~~~~~~v~~~~-~t~d---~~~-------a  111 (305)
                      .+.+.|+||++.+|..++..|+..| .  .|++.++++..  ....++...  ...+..+. .-+|   .++       .
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~--~V~l~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~   78 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEW--HVIMACRDFLKAEQAAKSLGMP--KDSYTIMHLDLGSLDSVRQFVQQFRES   78 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCC--EEEEEeCCHHHHHHHHHHhcCC--CCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            3478999999999999999999998 7  89999886521  112223211  11122110 1111   111       1


Q ss_pred             hCCCCEEEEcCCCCCCC----CCch---hhHHHhhH----HHHHHHHHHHHHhCC-CcEEEEec
Q 021932          112 LTGMDIVIIPAGVPRKP----GMTR---DDLFNINA----GIVKTLCEGIAKCCP-KAIVNLIS  163 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~----g~~r---~d~~~~N~----~i~~~i~~~I~~~~p-~aiviv~t  163 (305)
                      +...|++|..||.....    ..+.   ...+..|.    -+++.+.+.+.+... .+.|+++|
T Consensus        79 ~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vs  142 (314)
T TIGR01289        79 GRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVG  142 (314)
T ss_pred             CCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            24689999999963221    1121   22344554    346666777765532 34555554

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=95.13  E-value=0.27  Score=40.76  Aligned_cols=116  Identities=18%  Similarity=0.185  Sum_probs=70.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----CchhhhhhhcccCCceEEEEecC-CC----------HHHHh
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQ-QQ----------LEDAL  112 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~t-~d----------~~~al  112 (305)
                      .+.|+||+|-+|..++..|++.|- ..|++++.++    ......++.+.  ..++..+... ++          ..+..
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~l~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGA-RVVILTSRSEDSEGAQELIQELKAP--GAKITFIECDLSDPESIRALIEEVIKRF   78 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTT-EEEEEEESSCHHHHHHHHHHHHHHT--TSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCc-eEEEEeeeccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence            588999999999999999998843 3888888872    11122233321  1233322111 11          12234


Q ss_pred             CCCCEEEEcCCCCCCCCC---c---hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          113 TGMDIVIIPAGVPRKPGM---T---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~---~---r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                      ...|++|.++|.......   +   -.+.+..|+.....+.+.+.. .+.+.|+++|....
T Consensus        79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~~  138 (167)
T PF00106_consen   79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIAG  138 (167)
T ss_dssp             SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGGG
T ss_pred             ccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchhh
Confidence            589999999997652211   1   124556676666666666666 55777777765443

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK06823 ornithine cyclodeaminase; Validated

Probab=95.13  E-value=0.12  Score=48.90  Aligned_cols=73  Identities=10%  Similarity=0.083  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ...+++|+|+ |..+...+..+..-...++|.++|++..  ...+..+.+.  ...+...   .+.++++++||+|+.+.
T Consensus       127 d~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~--~~~v~~~---~~~~~av~~ADIV~taT  200 (315)
T PRK06823        127 HVSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL--GFAVNTT---LDAAEVAHAANLIVTTT  200 (315)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc--CCcEEEE---CCHHHHhcCCCEEEEec
Confidence            4569999998 9999988877776555689999999872  3333333332  2234432   46789999999999865


Q ss_pred             C
Q 021932          123 G  123 (305)
Q Consensus       123 g  123 (305)
                      +
T Consensus       201 ~  201 (315)
T PRK06823        201 P  201 (315)
T ss_pred             C
Confidence            3

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.11  E-value=0.54  Score=44.52  Aligned_cols=118  Identities=23%  Similarity=0.218  Sum_probs=72.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-----------CCCHHH
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-----------QQQLED  110 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-----------t~d~~~  110 (305)
                      ...+-+.|+||++-+|..+|..|+.+|.  +|++..++..  ...+.++........+.....           ...+++
T Consensus        33 ~~~~~~vVTGansGIG~eta~~La~~Ga--~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~  110 (314)
T KOG1208|consen   33 LSGKVALVTGATSGIGFETARELALRGA--HVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK  110 (314)
T ss_pred             CCCcEEEEECCCCchHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence            3345788999999999999999999996  9999998862  223344544211122211100           112334


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhh----HHHhh----HHHHHHHHHHHHHhCCCcEEEEec
Q 021932          111 ALTGMDIVIIPAGVPRKPGMTRDD----LFNIN----AGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~d----~~~~N----~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ....-|+.|..||+...+.....|    .+..|    .-+.+.+.+.+++..|--||.+.|
T Consensus       111 ~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS  171 (314)
T KOG1208|consen  111 KEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSS  171 (314)
T ss_pred             cCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcC
Confidence            456889999999975544322212    12333    356778888888877844444445

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.08  E-value=0.28  Score=43.19  Aligned_cols=35  Identities=17%  Similarity=0.381  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..||.|+|+ |.+|+.++..|+..|+ .+|.++|.+.
T Consensus        21 ~s~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d~   55 (197)
T cd01492          21 SARILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDRT   55 (197)
T ss_pred             hCcEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            358999998 8899999999999997 5899999874

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.06  E-value=0.064  Score=50.49  Aligned_cols=111  Identities=23%  Similarity=0.220  Sum_probs=68.0

Q ss_pred             CCcchhhHHHHHHHhhhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932            3 QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .|||.-+.|++...+..+     |+-..-+-.....-- .+..+-||+|+|+ |.||..-|......|-  +|.++|.+.
T Consensus       131 aPMSeVAGrla~q~Ga~~-----lek~~GG~GvllgGv-pGV~~~kv~iiGG-GvvgtnaAkiA~glgA--~Vtild~n~  201 (371)
T COG0686         131 APMSEVAGRLAAQAGAYY-----LEKTNGGKGVLLGGV-PGVLPAKVVVLGG-GVVGTNAAKIAIGLGA--DVTILDLNI  201 (371)
T ss_pred             chHHHHhhhHHHHHHHHH-----HHhccCCceeEecCC-CCCCCccEEEECC-ccccchHHHHHhccCC--eeEEEecCH
Confidence            489999999887766653     211110111111111 3455679999999 9999998877765554  999999975


Q ss_pred             CchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCCC
Q 021932           83 TPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        83 ~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      .+-.-+|-..   ..++.. .+...+++++++.+|+||-+.-+|
T Consensus       202 ~rl~~ldd~f---~~rv~~~~st~~~iee~v~~aDlvIgaVLIp  242 (371)
T COG0686         202 DRLRQLDDLF---GGRVHTLYSTPSNIEEAVKKADLVIGAVLIP  242 (371)
T ss_pred             HHHhhhhHhh---CceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence            2111122221   234443 223347889999999998865443

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.04  E-value=0.12  Score=46.68  Aligned_cols=34  Identities=21%  Similarity=0.099  Sum_probs=29.6

Q ss_pred             CEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaa--G~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.+.|+||+  +-+|..++..|++.|.  +|++.++++
T Consensus         8 k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~   43 (252)
T PRK06079          8 KKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQND   43 (252)
T ss_pred             CEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCch
Confidence            479999997  5899999999999998  899998764

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=95.03  E-value=0.085  Score=53.62  Aligned_cols=103  Identities=21%  Similarity=0.279  Sum_probs=70.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHh-----CCC-----CcEEEEEeCCCC--chhhhhhhccc-CCc-eEEEEecCCCHHHH
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKI-----NPL-----VSVLHLYDVVNT--PGVTADISHMD-TNA-VVRGFLGQQQLEDA  111 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~-----~~~-----~~el~L~D~~~~--~g~~~DL~~~~-~~~-~v~~~~~t~d~~~a  111 (305)
                      ..||.+.|| |..|..+|..|..     .|+     ...+.++|.+.+  .+..-+|.+.. .+. ...   ...+++++
T Consensus       321 d~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~---~~~~L~e~  396 (581)
T PLN03129        321 DQRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE---PGASLLEA  396 (581)
T ss_pred             hceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcc---cCCCHHHH
Confidence            469999999 9999999987776     355     258999998762  11110122211 011 111   12478999


Q ss_pred             hCC--CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 021932          112 LTG--MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (305)
Q Consensus       112 l~~--aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv  166 (305)
                      +++  +|+.|=+.+.+   |           -+.+++++.|.+++++.+|+-.|||.
T Consensus       397 v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~~rPIIFaLSNPt  439 (581)
T PLN03129        397 VKAIKPTVLIGLSGVG---G-----------TFTKEVLEAMASLNERPIIFALSNPT  439 (581)
T ss_pred             HhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCCC
Confidence            999  89887766543   2           13567888999999999999999997

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.01  E-value=0.15  Score=49.27  Aligned_cols=34  Identities=29%  Similarity=0.548  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~   81 (305)
                      ..||.|+|+ |-+|+.++..|+..|+ .+|.|+|.+
T Consensus       135 ~~~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d  168 (376)
T PRK08762        135 EARVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHD  168 (376)
T ss_pred             cCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            458999999 9999999999999997 599999987

>PRK07877 hypothetical protein; Provisional

Probab=95.01  E-value=0.11  Score=54.49  Aligned_cols=75  Identities=23%  Similarity=0.388  Sum_probs=50.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----Cchh---hh------------hhhcccCCceEEEEec-
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGV---TA------------DISHMDTNAVVRGFLG-  104 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-----~~g~---~~------------DL~~~~~~~~v~~~~~-  104 (305)
                      ..||+|+|+ | +|+.++..|+..|++.+|.|+|-+.     +.-+   ..            .+.......++..+.. 
T Consensus       107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~  184 (722)
T PRK07877        107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG  184 (722)
T ss_pred             cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            469999999 9 9999999999999877999999874     1111   01            1222222334444321 


Q ss_pred             --CCCHHHHhCCCCEEEEcC
Q 021932          105 --QQQLEDALTGMDIVIIPA  122 (305)
Q Consensus       105 --t~d~~~al~~aDiVIi~a  122 (305)
                        ..+..+-++++|+||-+.
T Consensus       185 i~~~n~~~~l~~~DlVvD~~  204 (722)
T PRK07877        185 LTEDNVDAFLDGLDVVVEEC  204 (722)
T ss_pred             CCHHHHHHHhcCCCEEEECC
Confidence              134556678999999985

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.00  E-value=0.088  Score=49.13  Aligned_cols=65  Identities=22%  Similarity=0.402  Sum_probs=50.3

Q ss_pred             cccCCCC----------CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC
Q 021932           36 MDCRAKG----------GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ  105 (305)
Q Consensus        36 ~~~~~~~----------~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t  105 (305)
                      .+|||.+          +...++|+|||.+|.||..++..|+..+.  .|.++...                       +
T Consensus       138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-----------------------t  192 (284)
T PRK14179        138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-----------------------T  192 (284)
T ss_pred             cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-----------------------C
Confidence            6888751          23457999999999999999999998887  77766211                       1


Q ss_pred             CCHHHHhCCCCEEEEcCCCC
Q 021932          106 QQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus       106 ~d~~~al~~aDiVIi~ag~~  125 (305)
                      .++++.+++||+||.+.|.+
T Consensus       193 ~~l~~~~~~ADIVI~avg~~  212 (284)
T PRK14179        193 RNLAEVARKADILVVAIGRG  212 (284)
T ss_pred             CCHHHHHhhCCEEEEecCcc
Confidence            24667899999999999865

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=94.99  E-value=0.28  Score=45.13  Aligned_cols=69  Identities=22%  Similarity=0.269  Sum_probs=40.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~-L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++||+|||+ |.+|..++..+...+.. ++. +++.........+...    ..+..+   +|+++.-.+.|+|+++++
T Consensus         1 m~rVgIiG~-G~iG~~~~~~l~~~~~~-~l~~v~~~~~~~~~~~~~~~----~~~~~~---~d~~~l~~~~DvVve~t~   70 (265)
T PRK13303          1 MMKVAMIGF-GAIGAAVLELLEHDPDL-RVDWVIVPEHSIDAVRRALG----EAVRVV---SSVDALPQRPDLVVECAG   70 (265)
T ss_pred             CcEEEEECC-CHHHHHHHHHHhhCCCc-eEEEEEEcCCCHHHHhhhhc----cCCeee---CCHHHhccCCCEEEECCC
Confidence            469999999 99999999888776432 443 3343322111111110    112222   355443356999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	305
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-154
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-140
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		2e-90
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		1e-89
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		9e-82
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		1e-81
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		2e-80
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		2e-74
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		3e-21
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		4e-21
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		4e-21
1guz_A	310	Structural Basis For Thermophilic Protein Stability		1e-20
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		2e-20
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		1e-19
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		5e-18
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		6e-18
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		6e-18
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		6e-17
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		7e-17
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		9e-17
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		9e-17
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		1e-16
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		1e-16
1guy_A	309	Structural Basis For Thermophilic Protein Stability		2e-16
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		2e-16
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		3e-15
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		5e-15
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		5e-15
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-14
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-14
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		2e-14
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-14
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		4e-14
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		8e-14
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		1e-13
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		2e-13
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		4e-13
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		4e-13
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		6e-13
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		5e-11
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		9e-11
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		1e-10
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		2e-10
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		7e-10
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		1e-09
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		1e-09
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		3e-09
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		4e-09
3d0o_A	317	Crystal Structure Of Lactate Dehydrogenase From Sta		5e-09
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		5e-09
3h3j_A	317	Crystal Structure Of Lactate Dehydrogenase Mutant (		6e-09
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		8e-09
1ez4_A	318	Crystal Structure Of Non-Allosteric L-Lactate Dehyd		9e-09
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		1e-08
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		1e-08
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		1e-08
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		2e-08
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		2e-08
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		2e-08
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		3e-08
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		3e-08
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		3e-08
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		6e-08
1ldb_A	317	Structure Determination And Refinement Of Bacillus		6e-08
1bmd_A	327	Determinants Of Protein Thermostability Observed In		2e-07
1iz9_A	327	Crystal Structure Of Malate Dehydrogenase From Ther		2e-07
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		2e-07
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		3e-07
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		3e-07
1wze_A	327	Structural Basis For Alteration Of Cofactor Specifi		5e-07
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		6e-07
2v65_A	331	Apo Ldh From The Psychrophile C. Gunnari Length = 3		7e-07
1bdm_A	327	The Structure At 1.8 Angstroms Resolution Of A Sing		8e-07
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		8e-07
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		1e-06
4mdh_A	334	Refined Crystal Structure Of Cytoplasmic Malate Deh		1e-06
5mdh_A	333	Crystal Structure Of Ternary Complex Of Porcine Cyt		1e-06
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		5e-06
1t2f_A	333	Human B Lactate Dehydrogenase Complexed With Nad+ A		1e-05
1i0z_A	333	Human Heart L-Lactate Dehydrogenase H Chain, Ternar		1e-05
5ldh_A	334	Structure Of The Active Ternary Complex Of Pig Hear		5e-05
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		9e-05
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		9e-05

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  540 bits (1390), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/303 (87%), Positives = 279/303 (92%), Gaps = 1/303 (0%)
Query: 3   QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
           QP    NQRIARI+AHLHPP  Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2   QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60
Query: 63  AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
           AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61  AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120
Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
           GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180
Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
           YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP  S T 
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240
Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGVIECA+V+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300
Query: 303 TVS 305
            V+
Sbjct: 301 QVT 303

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  494 bits (1273), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 242/267 (90%), Positives = 253/267 (94%)
Query: 39  RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV 98
           RAKGG+PGFKVA+LGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 218
           VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180
Query: 219 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 278
           VGGHAGVTILPLLSQVKP  S T  EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA 
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 240
Query: 279 KFADACLRGLRGDAGVIECAYVASTVS 305
           KFADACLRGLRGDAGVIECA+V+S V+
Sbjct: 241 KFADACLRGLRGDAGVIECAFVSSQVT 267

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  328 bits (841), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 158/255 (61%), Positives = 199/255 (78%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 30  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQ 89
Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A++ +I+NPVN
Sbjct: 90  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVN 149
Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
           ST+PI AEVFKK G Y+P ++ GVT LD+VRANTFVAE+ GLDP  V+VPV+GGHAG TI
Sbjct: 150 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTI 209
Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 287
           +PL+SQ  P       ++  LT RIQ  GTEVV+AK GAGSATLSMAYA A+F  + +  
Sbjct: 210 IPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 269
Query: 288 LRGDAGVIECAYVAS 302
           + G  GV+EC++V S
Sbjct: 270 MNGKEGVVECSFVKS 284

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  326 bits (836), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 158/255 (61%), Positives = 196/255 (76%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
           ST+PI AEVFKK G Y+P ++ GVT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 287
           +PL+SQ  P       ++  LT RIQ  GTEVV+AK GAGSATLSMAYA A+F  + +  
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241
Query: 288 LRGDAGVIECAYVAS 302
           + G  GV+EC++V S
Sbjct: 242 MNGKEGVVECSFVKS 256

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  300 bits (767), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 157/256 (61%), Positives = 189/256 (73%), Gaps = 4/256 (1%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG 104
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+N
Sbjct: 61  EDA-TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PVN+TV IAAEV KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
           VTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + 
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 285 LRGLRGDAGVIECAYV 300
           +R L+G+ GV+ECAYV
Sbjct: 239 VRALQGEQGVVECAYV 254

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  299 bits (766), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 157/256 (61%), Positives = 189/256 (73%), Gaps = 4/256 (1%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG 104
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+N
Sbjct: 61  EDA-TPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PVN+TV IAAEV KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
           VTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + 
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 285 LRGLRGDAGVIECAYV 300
           +R L+G+ GV+ECAYV
Sbjct: 239 VRALQGEQGVVECAYV 254

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  295 bits (756), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 156/256 (60%), Positives = 188/256 (73%), Gaps = 4/256 (1%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG 104
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+N
Sbjct: 61  EDA-TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           PVN+TV IAAEV KK G YD  +L GVT LD++ +NTFVAE+ G  P EV+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
           VTILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + 
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 285 LRGLRGDAGVIECAYV 300
           +R L+G+ GV+ECAYV
Sbjct: 239 VRALQGEQGVVECAYV 254

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  275 bits (703), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 153/259 (59%), Positives = 186/259 (71%), Gaps = 5/259 (1%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRG 101
           S   KVAV+GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T+  ++G
Sbjct: 1   SNAXKVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKG 60
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
           + G+     AL G D+V+I AGV RKPG  R DLFN+NAGIVK+L E IA  CP A + +
Sbjct: 61  YAGEDPTP-ALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGI 119
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           I+NPVN+TVPIAAEV KK G YD ++L GVT LDV+R+ TFVAE+ G DP EV VPV+GG
Sbjct: 120 ITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGG 179
Query: 222 HAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFA 281
           H+GVTILPLLSQV+     +  EI  LT RIQN GTEVVEAK G GSATLS   AA +F 
Sbjct: 180 HSGVTILPLLSQVE-GVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSXGQAACRFG 238
Query: 282 DACLRGLRGDAGVIECAYV 300
            A ++ L+G+  VIE AYV
Sbjct: 239 LALVKALQGEE-VIEYAYV 256

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 23/234 (9%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTNAVVRGFLG 104
           K++++GA G IG  +A+L+    L  V +++D++     G   D++H M          G
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDV-YMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
           +   E  L   D+VII AGVPRKP MTR DL  +NA IV ++ E + K CP A V  I+N
Sbjct: 74  ENNYE-YLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
           P+++ V      FK+       ++ G++ +LD  R    ++  LG+ P +V   VVGGH 
Sbjct: 133 PLDAMV----YYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGH- 187
Query: 224 GVTILP----------LLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
           G  ++P          LLS       +T ++I+ +  +   GG E+VE  KTG+
Sbjct: 188 GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELLKTGS 241

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 138/254 (54%), Gaps = 22/254 (8%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNTPGVTADISHMDTNAVVRGF--- 102
           KV+V+GA G  G   A L+    L  V+ L D+  +  P     +  ++ + V +GF   
Sbjct: 10  KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLEASPV-QGFDAN 66
Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
            +G     D     D+V+I AG+ RKPGM+RDDL   N+ I+K++   IAK  P AI+ +
Sbjct: 67  IIGTSDYADTADS-DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVV 125
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NPV++   +   VFK+ G +  +R++G + +LD  R  TF+A+ L L  +++   V+G
Sbjct: 126 LTNPVDA---MTYSVFKEAG-FPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLG 181
Query: 221 GHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
           GH G  ++PL+        P  +L P E ++ + +R + GG E+V    G GSA  + A 
Sbjct: 182 GH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGSAYYAPAA 239
Query: 276 AAAKFADACLRGLR 289
           +  +  +A L+  R
Sbjct: 240 SLVEMTEAILKDQR 253

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 127/256 (49%), Gaps = 29/256 (11%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------NAVVRG 101
           K+ ++GA G IG  LA L  I  L  V+ L+D+         +  + T      +  VRG
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGXPNGKALDLLQTCPIEGVDFKVRG 64
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
               + LE++    D+VI+ AGVPRKPG +RDDL  IN  + +T+ EGI   CP A V  
Sbjct: 65  TNDYKDLENS----DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVIC 120
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++    I     +K       +++G   +LD  R  TF+A+ L +  ++V   V G
Sbjct: 121 ITNPLD----IXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXG 176
Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
           GH G T +PL          L Q+     L    +D +  R ++GG E+V A    GSA 
Sbjct: 177 GH-GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV-ALLKTGSAY 234
Query: 271 LSMAYAAAKFADACLR 286
            + A A  + A++ L+
Sbjct: 235 YAPAAAGIQXAESFLK 250

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 131/273 (47%), Gaps = 39/273 (14%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH------MDTNAV 98
            K+ V+GA G +G   A  +    L   L L DVV     G   D+         DT   
Sbjct: 1   MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
                G     D     DIVII AG+PRKPGMTR+DL   NAGIVK + + I K     I
Sbjct: 60  -----GSNDYADTANS-DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPI 113
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDV 216
           + ++SNP++    +A      V +  PK R++G+  +LD  R  +F+A  LG+  ++++ 
Sbjct: 114 IIVVSNPLDIMTHVAW-----VRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINA 168
Query: 217 PVVGGHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATL 271
            V+GGH G  ++P++        P   L P E ID L +R +NGG E+VE     GSA  
Sbjct: 169 CVLGGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFY 226
Query: 272 SMAYAAAKFADA----------CLRGLRGDAGV 294
           + A +  +  ++          C  GL G  G+
Sbjct: 227 APASSVVEMVESIVLDRKRVLPCAVGLEGQYGI 259

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 107/196 (54%), Gaps = 24/196 (12%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           DIVII AG+PRKPGMTR+DL   NAGIVK + + I K     I+ ++SNP++    +A  
Sbjct: 71  DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVAW- 129
Query: 176 VFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
               V +  PK R++G+  +LD  R  +F+A  LG+  ++++  V+GGH G  ++P++  
Sbjct: 130 ----VRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKY 184
Query: 234 VK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA----- 283
                 P   L P E ID L +R +NGG E+VE     GSA  + A +  +  ++     
Sbjct: 185 TTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSVVEMVESIVLDR 243
Query: 284 -----CLRGLRGDAGV 294
                C  GL G  G+
Sbjct: 244 KRVLPCAVGLEGQYGI 259

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 130/252 (51%), Gaps = 21/252 (8%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP-GVTADISHMD-TNAVVRGFLG 104
           K+A++G+ G IG  LA L  +  L  V+ L+D+   TP G   DI+     +     F G
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAESSPVDGFDAKFTG 66
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                 A+ G D+VI+ AGVPRKPGM+RDDL  IN  +++ +  GI K  P+A V  I+N
Sbjct: 67  ANDYA-AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           P+++ V  A + F  +  +    + GV  LD  R   F++E   +   +V V V+GGH  
Sbjct: 126 PLDAMV-WALQKFSGLPAHKVVGMAGV--LDSARFRYFLSEEFNVSVEDVTVFVLGGHGD 182
Query: 225 VTI----------LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 274
             +          +PL   VK   + +  ++D +  R ++GG E+V      GSA  + A
Sbjct: 183 SMVPLARYSTVAGIPLPDLVKMGWT-SQDKLDKIIQRTRDGGAEIV-GLLKTGSAFYAPA 240
Query: 275 YAAAKFADACLR 286
            +A + A++ L+
Sbjct: 241 ASAIQMAESYLK 252

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DTN  VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
             + +++NP++  V +  E      +  P  ++     MLD  R   +VA+ L + PR+V
Sbjct: 126 TFIIVVTNPLDCMVKVMCE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 180
Query: 215 DVPVVGGHAGVTILPLLSQV 234
              V+G H G  ++PL+  +
Sbjct: 181 QATVIGTH-GDCMVPLVRYI 199

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DTN  VR 
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 66
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK
Sbjct: 67  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 123
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
             + +++NP++  V +  E      +  P  ++     MLD  R   +VA+ L + PR+V
Sbjct: 124 TFIIVVTNPLDCMVKVMCE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 178
Query: 215 DVPVVGGHAGVTILPLLSQV 234
              V+G H G  ++PL+  +
Sbjct: 179 QATVIGTH-GDCMVPLVRYI 197

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DTN  VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
             + +++NP++  V +  E      +  P  ++     MLD  R   +VA+ L + PR+V
Sbjct: 126 TFIIVVTNPLDCMVKVMXE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 180
Query: 215 DVPVVGGHAGVTILPLLSQV 234
              V+G H G  ++PL+  +
Sbjct: 181 QATVIGTH-GDCMVPLVRYI 199

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 16/176 (9%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G D+VI+ AGVP+KPG TR  L   NA ++K +   ++K  P +IV +++NPV+    
Sbjct: 65  LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-------- 222
           +    F K    DP+++ G  T+LD  R  T +A+  G  PR V V V+G H        
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVW 180
Query: 223 AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 276
           +G  I  +PL +  +         ++   ++ +    E++E K GA    +++A A
Sbjct: 181 SGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK-GATHYAIALAVA 235

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 84.3 bits (207), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 124/254 (48%), Gaps = 29/254 (11%)
Query: 47  FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH------MDTNAV 98
            K+ V+GA G +G   A  +    L   L L DVV     G   D+         DT   
Sbjct: 1   MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
                G     D     DIV+I AG+PRKPGMTR+DL ++NAGIV+ +   I +     I
Sbjct: 60  -----GSNDYADTANS-DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPI 113
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDV 216
           + ++SNP++    +A   ++K G   PK R++G+  +LD  R  +F+A  LG+  ++V  
Sbjct: 114 IVVVSNPLDIMTHVA---WQKSGL--PKERVIGMAGVLDSARFRSFIAMELGVSMQDVTA 168
Query: 217 PVVGGHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATL 271
            V+GGH G  ++P++        P   L   E I  L +R + GG E+V      GSA  
Sbjct: 169 CVLGGH-GDAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIVN-HLKQGSAFY 226
Query: 272 SMAYAAAKFADACL 285
           S A +  +  ++ +
Sbjct: 227 SPATSVVEMVESIV 240

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 84.3 bits (207), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 125/261 (47%), Gaps = 34/261 (13%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S      DTN  V  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
                Q E  + G D+VII AG+ + PG      +R+DL   NA I++ + +G+ K CP 
Sbjct: 68  ---ANQYEK-IAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPL 123
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A V +++NP++  V    + F +        + G+  +LD  R   F+A+ L + PR++ 
Sbjct: 124 AFVIVVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQ 179
Query: 216 VPVVGGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             V+G H G  +LPL          L +      +T  ++  + +R +  G E+V    G
Sbjct: 180 ATVIGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LG 237
Query: 266 AGSATLSMAYAAAKFADACLR 286
            GSA  + A +A   A A L+
Sbjct: 238 QGSAYYAPALSAITMAQAFLK 258

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 125/261 (47%), Gaps = 34/261 (13%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S      DTN  V  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
                Q E  + G D+VII AG+ + PG      +R+DL   NA I++ + +G+ K CP 
Sbjct: 68  ---ANQYEK-IAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPL 123
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A V +++NP++  V    + F +        + G+  +LD  R   F+A+ L + PR++ 
Sbjct: 124 AFVIVVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQ 179
Query: 216 VPVVGGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             V+G H G  +LPL          L +      +T  ++  + +R +  G E+V    G
Sbjct: 180 ATVIGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LG 237
Query: 266 AGSATLSMAYAAAKFADACLR 286
            GSA  + A +A   A A L+
Sbjct: 238 QGSAYYAPALSAITMAQAFLK 258

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 90/158 (56%), Gaps = 12/158 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
               V  +  +R++G   +LD  R  TF+A   G+  ++V   ++GGH G  ++PL    
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
            +S +  S  + P  +  + +R + GG E+V   KTG+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGS 224

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 90/158 (56%), Gaps = 12/158 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
               V  +  +R++G   +LD  R  TF+A   G+  ++V   ++GGH G  ++PL    
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
            +S +  S  + P  +  + +R + GG E+V   KTG+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGS 224

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 12/158 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
               V  +  +R++G   +LD  R  TF+A   G+   +V   ++GGH G  ++PL    
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
            +S +  S  + P  +  + +R + GG E+V   KTG+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGS 224

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 12/158 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
               V  +  +R++G   +LD  R  TF+A   G+   +V   ++GGH G  ++PL    
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGA 266
            +S +  S  + P  +  + +R + GG E+V   KTG+
Sbjct: 187 CISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKTGS 224

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 12/191 (6%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTNAVVRGFLG 104
           K+AV+G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                D ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CP A V  I+N
Sbjct: 64  TNDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
           P++    +    F+KV      ++ G+  +LD  R  TF+A+  G++  +V   V+GGH 
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 224 GVTILPLLSQV 234
           G  ++P  S V
Sbjct: 178 GDGMVPATSSV 188

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 12/191 (6%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTNAVVRGFLG 104
           K+AV+G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
                D ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CP A V  I+N
Sbjct: 64  TDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
           P++    +    F+KV      ++ G+  +LD  R  TF+A+  G++  +V   V+GGH 
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 224 GVTILPLLSQV 234
           G  ++P  S V
Sbjct: 178 GDGMVPATSSV 188

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 116/237 (48%), Gaps = 28/237 (11%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHL----YDVVNTPGVTADI------SHMDTNA 97
           KV ++GA+G +G   A+L+   P +  L L    + +    G+  DI      +  D N 
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
            V      + ++++    D+VII +GVPRK GM+R DL   NA IV    + IA+ C   
Sbjct: 62  YVESDENLRIIDES----DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK 117
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
           I  +I+NPV+  +   A V  K   ++  ++ G+ T LD +R    +A+  G+   EV  
Sbjct: 118 IF-VITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT 172
Query: 217 PVVGGHAGVTILPLLSQ-------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA 266
            ++G H G +++PLLS        ++         ID + + ++  G +++  K G+
Sbjct: 173 RIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGS 228

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 125/264 (47%), Gaps = 28/264 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CP 
Sbjct: 60  KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V     
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH-- 232
Query: 266 AGSATLSMAYAAAKFADACLRGLR 289
             S  ++ A A  + A++ L+ L+
Sbjct: 233 -ASPYVAPAAAIIEMAESYLKDLK 255

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 125/264 (47%), Gaps = 28/264 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 58
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CP 
Sbjct: 59  KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 118
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 119 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 174
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V     
Sbjct: 175 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH-- 231
Query: 266 AGSATLSMAYAAAKFADACLRGLR 289
             S  ++ A A  + A++ L+ L+
Sbjct: 232 -ASPYVAPAAAIIEMAESYLKDLK 254

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 125/264 (47%), Gaps = 28/264 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CP 
Sbjct: 60  KVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V     
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH-- 232
Query: 266 AGSATLSMAYAAAKFADACLRGLR 289
             S  ++ A A  + A++ L+ L+
Sbjct: 233 -ASPYVAPAAAIIEMAESYLKDLK 255

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 125/264 (47%), Gaps = 28/264 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 58
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CP 
Sbjct: 59  KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 118
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 119 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 174
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V     
Sbjct: 175 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH-- 231
Query: 266 AGSATLSMAYAAAKFADACLRGLR 289
             S  ++ A A  + A++ L+ L+
Sbjct: 232 -ASPYVAPAAAIIEMAESYLKDLK 254

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 123/263 (46%), Gaps = 26/263 (9%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ ++D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-MFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L   D+VI+ AG  + PG       RDDL  +N  I+  +   I   CP 
Sbjct: 60  KVSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+    +  ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVD----VMVQLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTILPL---------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA 266
             +VG H    +L           L +   +  +T  E+D + DR  N   E+V      
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKKITDQELDAIFDRTINTALEIVNLH--- 232
Query: 267 GSATLSMAYAAAKFADACLRGLR 289
            S  ++ A A  + A++ +R LR
Sbjct: 233 ASPYVAPAAAIIEMAESYIRDLR 255

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 15/223 (6%)
Query: 49  VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM--DTNAVVRGFLGQ 105
           + +LGA G +G   A+++ +     +L +      P G   D++H   +    +R   G 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIR-ISGS 59
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
              ED + G DIV++ AG+ RKPGMTR+ L   NA  +  L E I      AIV + +NP
Sbjct: 60  NSYED-MRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNP 118
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           V++   +   ++KK G +  +R++G + +LD  R   ++++ LG+  + V+  V+G H  
Sbjct: 119 VDAMTYV---MYKKTG-FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQ 174
Query: 225 VTI-LPLLSQ---VKPSCSLTPTEIDYLTDRIQNGGTEVVEAK 263
               +P LS    V     ++  EI+ +     N G ++ E +
Sbjct: 175 KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR 217

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 128/264 (48%), Gaps = 28/264 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ ++DVV N P G   D SH +  A    
Sbjct: 1   TPKPKIVLVGS-GMIGGVMATLIVQKNLGDVV-MFDVVKNMPQGKALDTSHSNVMAYSNC 58
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I   CP 
Sbjct: 59  KVTGSNSYDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPN 118
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGV-TMLDVVRANTFVAEVLGLDPREV 214
           A + +++NPV+  V +   +F+  G   PK +++G+  +LD  R   ++++ L + PR+V
Sbjct: 119 AFIIVVTNPVDVMVQL---LFEHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 173
Query: 215 DVPVVGGHAGVTILPL---------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
           +  +VG H    +L           L +   +  +T  E++ + DR  N   E+V     
Sbjct: 174 NALIVGAHGNKMVLLKRYITVGGIPLQEFINNKKITDEEVEGIFDRTVNTALEIVNL--- 230
Query: 266 AGSATLSMAYAAAKFADACLRGLR 289
             S  ++ A A  + A++ L+ ++
Sbjct: 231 LASPYVAPAAAIIEMAESYLKDIK 254

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 112/235 (47%), Gaps = 25/235 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CP 
Sbjct: 60  KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+    +  ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVV 260
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIV 229

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 35/237 (14%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG--FL 103
           KVA++GA G +G   A  M +    + L L DV      G   DI+H        G  F+
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH--------GLPFM 59
Query: 104 GQQQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
           GQ  L       +   D++++ AG  RKPG TR DL   N  I K + + I K     ++
Sbjct: 60  GQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVI 119
Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
            ++SNPV+    I   + +K       +++G  T+LD +R    ++E LG+D + V   +
Sbjct: 120 LVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYI 175
Query: 219 VGGHAGVTILPLLSQVK------------PSCSLTPTEIDYLTDRIQNGGTEVVEAK 263
           +G H G + LPL S               P C+ T  +   + + ++  G  +++ K
Sbjct: 176 IGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK 231

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 124/264 (46%), Gaps = 28/264 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
           +P  K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A    
Sbjct: 2   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
            +      D L G D+VI+ AG  + PG       R DL  +N  I+  +   I K CP 
Sbjct: 60  KVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+  V    ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             +VG H    +L          PL   +     ++  E++ + DR  N   E+V     
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH-- 232
Query: 266 AGSATLSMAYAAAKFADACLRGLR 289
             S  ++ A A  + A++ L+ L+
Sbjct: 233 -ASPYVAPAAAIIEMAESYLKDLK 255

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 82/159 (51%), Gaps = 12/159 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+ II AG+PR PGM+RDDL   N  IV  + E   +  P + + +++NP++    +A E
Sbjct: 71  DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYE 130
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
                  +   R++G+  +LD  R  +F+AE L +  R+V   ++GGH G T++PL    
Sbjct: 131 ----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYT 185
Query: 235 KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
                  P  ID    RI+    E+VE   GAG   + +
Sbjct: 186 TVGGIPVPQLIDDA--RIE----EIVERTKGAGGEIVDL 218

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 111/263 (42%), Gaps = 27/263 (10%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD--VVNTPGVTADISHMDTNAVVRGFLGQ 105
           K+ ++GAAG IG  +A    +  L   L LYD   V   GV  +I H     +   F   
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF--T 67
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP--KAIVNLIS 163
             +++ALT    ++   G PRK GMTR+DL   NA I   L + I   CP  K ++ +I 
Sbjct: 68  SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVI-IIF 126
Query: 164 NPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-DVPVVGGH 222
           NP +    I   V        P ++  +  LD  R  + +A+  G+    V +    GGH
Sbjct: 127 NPAD----ITGLVTLIYSGLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH 182
Query: 223 ----------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS 272
                     A V   PL   +     LT  +   L  R+  GG  +++ +    S+  S
Sbjct: 183 GEQMAVFASTAKVNGTPLTDLIGTD-KLTNEQWAELKQRVVKGGANIIKLR--GRSSFQS 239
Query: 273 MAYAAAKFADACLRG--LRGDAG 293
            +Y + +   A + G   R  AG
Sbjct: 240 PSYVSIEMIRAAMGGEAFRWPAG 262

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 20/182 (10%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG P+KPG TR DL N N  I+K++ + I       I  + +NPV+    I   
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
              K+  +   R++G  T LD  R    +AE++ +D R V   ++G H G T  P+ S  
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 234 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
                     VK    +   ++  + + +++   E+++ K   G+    +A A A+ + A
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKA 249
Query: 284 CL 285
            L
Sbjct: 250 IL 251

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 20/182 (10%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG P+KPG TR DL N N  I+K++ + I       I  + +NPV+    I   
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
              K+  +   R++G  T LD  R    +A+++ +D R V   ++G H G T  P+ S  
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 234 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
                     VK    +   ++  + + ++N   E+++ K   G+    +A A A+ + A
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLK---GATFYGIATALARISKA 249
Query: 284 CL 285
            L
Sbjct: 250 IL 251

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 20/182 (10%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG P++PG TR DL N N  I+K++ + I       I  + +NPV+    I   
Sbjct: 77  DLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVD----ILTY 132
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
              K+  +   R++G  T LD  R    +AE++ +D R V   ++G H G T  P+ S  
Sbjct: 133 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 191
Query: 234 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
                     VK    +   ++  + + +++   E+++ K   G+    +A A A+ + A
Sbjct: 192 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKA 248
Query: 284 CL 285
            L
Sbjct: 249 IL 250

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
           +  +V  ++    P R++G  T+LD  R    +AE L + P+ V   V+G H    +L  
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSM 273
                   PLL   +    +L+P +   + + ++     ++E K       GAG A L  
Sbjct: 181 SSAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 274 A 274
           A
Sbjct: 241 A 241

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
           +  +V  ++    P R++G  T+LD  R    +AE L + P+ V   V+G H    +L  
Sbjct: 121 VXTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSM 273
                   PLL   +    +L+P +   + + ++     ++E K       GAG A L  
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 274 A 274
           A
Sbjct: 241 A 241

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
           +  +V  ++    P R++G  T+LD  R    +AE L + P+ V   V+G H    +L  
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSM 273
                   PLL   +    +L+P +   + + ++     ++E K       GAG A L  
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 274 A 274
           A
Sbjct: 241 A 241

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 108/256 (42%), Gaps = 30/256 (11%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNA---VVRGF 102
           KVA++GA G +G   A  +    +   L + DV      G   D++H    A   V   +
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
              +  +DA    DIV I AG  +KPG TR +L   N  I K +   +       I  + 
Sbjct: 66  GTYEDCKDA----DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NPV+    I      K      +R++G  T LD  R    ++E  G  P+ V   ++G 
Sbjct: 122 TNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGE 177
Query: 222 HAGVTILPLLSQ-----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
           H G T LP+ S            V+ + +    E+D + D ++N    ++E K   G+  
Sbjct: 178 H-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATY 233
Query: 271 LSMAYAAAKFADACLR 286
             +A + A+   A L 
Sbjct: 234 YGVAMSLARITKAILH 249

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
           +  +V   +    P R++G  T+LD  R    +AE L + P+ V   V+G H    +L  
Sbjct: 121 VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSM 273
                   PLL   +    +L+P +   + + ++     ++E K       GAG A L  
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 274 A 274
           A
Sbjct: 241 A 241

>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 19/183 (10%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG  +KPG TR DL + N  I K++   +       I  + +NPV+    I A 
Sbjct: 76  DLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
              K      +R++G  T+LD  R    ++E   + PR VD  ++G H G T LP+ S  
Sbjct: 132 ATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSHA 190
Query: 235 ----KPSCSLTP------TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
               +P  +L         +I+ +  + ++   ++++AK   G+    +A   A+  +A 
Sbjct: 191 NIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATYYGVAMGLARITEAI 247
Query: 285 LRG 287
            R 
Sbjct: 248 FRN 250

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 92/223 (41%), Gaps = 39/223 (17%)
Query: 26  IEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG 85
           +E ++ G G M           KVAV GAAG IG  L  L+    L+           P 
Sbjct: 12  LEAQTQGPGSMSA--------VKVAVTGAAGQIGYALVPLIARGALLG----------PT 53
Query: 86  VTADISHMDTNAVVRGFLG-QQQLED-----------------ALTGMDIVIIPAGVPRK 127
              ++  +D    ++   G + +LED                 A  G+ I I+    PRK
Sbjct: 54  TPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAIMCGAFPRK 113
Query: 128 PGMTRDDLFNINAGIVKTLCEGIAK-CCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK 186
            GM R DL  +NA I K   E IA        V ++ NP N+   I  +  +  G  +P+
Sbjct: 114 AGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQ--GKLNPR 171
Query: 187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILP 229
            +  +T LD  RA + +A   G+   +V   ++ G+   T +P
Sbjct: 172 HVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSSTQVP 214

>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 19/183 (10%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG  +KPG TR DL + N  I K++   +       I  + +NPV+    I A 
Sbjct: 76  DLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
              K      +R++G  T+LD  R    ++E   + PR VD  ++G H G T LP+ S  
Sbjct: 132 ATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSHA 190
Query: 235 ----KPSCSLTP------TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
               +P  +L         +I+ +  + ++   ++++AK   G+    +A   A+  +A 
Sbjct: 191 NIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATYYGVAMGLARITEAI 247
Query: 285 LRG 287
            R 
Sbjct: 248 FRN 250

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 108/256 (42%), Gaps = 30/256 (11%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNA---VVRGF 102
           KVA++GA G +G   A  +    +   L + DV      G   D++H    A   V   +
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
              +  +DA    DIV I AG  +KPG TR +L   N  I K +   +       I  + 
Sbjct: 66  GTYEDCKDA----DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NPV+    I      K      +R++G  T LD  R    ++E  G  P+ V   ++G 
Sbjct: 122 TNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGE 177
Query: 222 HAGVTILPLLSQ-----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
           H G T LP+ S            V+ + +    E+D + D ++N    ++E K   G+  
Sbjct: 178 H-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATY 233
Query: 271 LSMAYAAAKFADACLR 286
             +A + A+   A L 
Sbjct: 234 YGVAMSLARITKAILH 249

>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 108/259 (41%), Gaps = 26/259 (10%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRG 101
           P  +  VL   G +G   A  M    +     + DVV   T G   D+       A  + 
Sbjct: 3   PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI 62
Query: 102 FLGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
           + G+    +DA    D+V+I AG P+KPG +R DL N N  I+ ++ + +       I  
Sbjct: 63  YSGEYSDCKDA----DLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118
Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
           + +NPV+    I      K   +  +R++G  T LD  R    + +   +DPR VD  ++
Sbjct: 119 VAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM 174
Query: 220 GGHAGVTILPL---------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAK----TGA 266
           G H                 +  V     ++  ++  L D ++N   +++  K     G 
Sbjct: 175 GEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYGI 234
Query: 267 GSATLSMAYAAAKFADACL 285
           G+A + ++ A  +  +A L
Sbjct: 235 GTALMRISKAILRDENAVL 253

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK---PSCSLTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V+        +  E + L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVEAKTGAGSATLSMAYAAAKFADACLR 286
              +V+E K   G+     A   A   +A L 
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH 238

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK---PSCSLTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V+        +  E + L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 210
Query: 255 GGTEVVEAKTGAGSATLSMAYAAAKFADACLR 286
              +V+E K   G+     A   A   +A L 
Sbjct: 211 SAMDVIERK---GATEWGPARGVAHMVEAILH 239

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK---PSCSLTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V+        +  E + L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVEAKTGAGSATLSMAYAAAKFADACLR 286
              +V+E K   G+     A   A   +A L 
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH 238

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
           L G +I+++ AG+ RKPGMTR DL + NAGI+K + + I +  P++ + +++NP++    
Sbjct: 67  LKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTY 126
Query: 172 IAA--------EVFKKVGTYDPKRL 188
           I          EVF      D +RL
Sbjct: 127 IMWKESGKPRNEVFGMGNQLDSQRL 151

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 112/262 (42%), Gaps = 27/262 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNA 97
           +P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  
Sbjct: 17  TPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPK 75
Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
           +V G     +  +      +VII AG  ++ G +R +L   N  I K +   + K  P  
Sbjct: 76  IVSG-----KDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNC 130
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
            + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P     
Sbjct: 131 KLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHG 186
Query: 217 PVVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEV--------VEAKTGAG 267
            V+G H G + +P+ S +  +  SL     D  TD+ +    EV         E     G
Sbjct: 187 WVLGEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKG 245
Query: 268 SATLSMAYAAAKFADACLRGLR 289
             + ++  + A  A++ ++ LR
Sbjct: 246 YTSWAIGLSVADLAESIMKNLR 267

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 112/262 (42%), Gaps = 27/262 (10%)
Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNA 97
           +P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  
Sbjct: 17  TPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPK 75
Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
           +V G     +  +      +VII AG  ++ G +R +L   N  I K +   + K  P  
Sbjct: 76  IVSG-----KDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNC 130
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
            + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P     
Sbjct: 131 KLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHG 186
Query: 217 PVVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEV--------VEAKTGAG 267
            V+G H G + +P+ S +  +  SL     D  TD+ +    EV         E     G
Sbjct: 187 WVLGEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKG 245
Query: 268 SATLSMAYAAAKFADACLRGLR 289
             + ++  + A  A++ ++ LR
Sbjct: 246 YTSWAIGLSVADLAESIMKNLR 267

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 20/212 (9%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK---PSCSLTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V         +  E + L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVEAKTGAGSATLSMAYAAAKFADACLR 286
              +V+E K   G+     A   A   +A L 
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH 238

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 20/212 (9%)
Query: 82  NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
           +T G  AD +H    D+N  VR    Q   ED   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
           NA I++ +   + +     I    SNPV+    +      + G    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK---PSCSLTPTEIDYLTDRIQN 254
           R    ++E      + V+  ++G H G   +P+ S+V         +  E + L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 210
Query: 255 GGTEVVEAKTGAGSATLSMAYAAAKFADACLR 286
              +V+E K   G+     A   A   +A L 
Sbjct: 211 SAMDVIERK---GATEWGPARGVAHMVEAILH 239

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG  +KPG +R +L      I+K +   + K  P AI  LI+NPV+    IA  
Sbjct: 77  DMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATH 132
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
           V +K+      ++ G  T LD  R    +A+  G++ + V   + G H G + +PL    
Sbjct: 133 VAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-GDSEVPLWESA 191
Query: 235 K----PSCSLTP 242
                P    TP
Sbjct: 192 TIGGVPMSDWTP 203

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 20/183 (10%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG  +KPG TR DL + N  I +++ E +     + +  + +NPV+    I   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
              K      +R++G  T+LD  R    + E   + P+ V   ++G H G T LP+ SQ 
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQA 190
Query: 234 ---VKPSCSLTPT-------EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
              V P   L  +       +++ +   +++   +++E K   G+    +A   A+   A
Sbjct: 191 YIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYGIAMGLARVTRA 247
Query: 284 CLR 286
            L 
Sbjct: 248 ILH 250

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 20/183 (10%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
           D+V+I AG  +KPG TR DL + N  I +++ E +     + +  + +NPV+    I   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
              K      +R++G  T+LD  R    + E   + P+ V   ++G H G T LP+ SQ 
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQA 190
Query: 234 ---VKPSCSLTPT-------EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
              V P   L  +       +++ +   +++   +++E K   G+    +A   A+   A
Sbjct: 191 YIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYGIAMGLARVTRA 247
Query: 284 CLR 286
            L 
Sbjct: 248 ILH 250

>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 20/212 (9%)
Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR 100
           +VAV GAAG IG  L        ML K  P+  +L L ++         +     +    
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDCAFP 63
Query: 101 GFLGQQQLED---ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
              G +  +D   A    D  ++    PRK GM R DL  +N  I       +A+   K 
Sbjct: 64  LLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKD 123
Query: 158 I-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV 216
           + V ++ NP N+   IA   +K     +P+    +T LD  RA   +A+  G     +  
Sbjct: 124 VKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRR 180
Query: 217 PVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
             V G+   T+ P L       +P+  L   E
Sbjct: 181 MTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212

>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 20/212 (9%)
Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR 100
           +VAV GAAG IG  L        ML K  P+  +L L ++         +     +    
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDCAFP 63
Query: 101 GFLGQQQLED---ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
              G +  +D   A    D  ++    PRK GM R DL  +N  I       +A+   K 
Sbjct: 64  LLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKD 123
Query: 158 I-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV 216
           + V ++ NP N+   IA   +K     +P+    +T LD  RA   +A+  G     +  
Sbjct: 124 VKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRR 180
Query: 217 PVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
             V G+   T+ P L       +P+  L   E
Sbjct: 181 MTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 31/201 (15%)
Query: 104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163
           G  +L DA     +VI+ AG  +KPG +R DL   NA I + L   I +  P A++ + S
Sbjct: 61  GHSELADA----QVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116
Query: 164 NPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH 222
           NPV+    +A ++         + ++G  T+LD  R    +A+  G+D       V+G H
Sbjct: 117 NPVDLLTDLATQLAPG------QPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEH 170
Query: 223 AGVTILPLLS--------------QVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGS 268
               +L   S              Q  P       +ID  T   +N    ++E K    +
Sbjct: 171 GDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGT---RNAAASIIEGKR---A 224
Query: 269 ATLSMAYAAAKFADACLRGLR 289
               +  A A+  +A LR  R
Sbjct: 225 TYYGIGAALARITEAVLRDRR 245

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 115/264 (43%), Gaps = 33/264 (12%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
           P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  +
Sbjct: 18  PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKI 76
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           V       +         +VII AG  ++ G +R +L   N  I K +   + K  P+  
Sbjct: 77  VSS-----KDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 131
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
           + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P      
Sbjct: 132 LLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 187
Query: 218 VVGGHAGVTILPLLSQVKPS----CSLTP---TEIDY-----LTDRIQNGGTEVVEAKTG 265
           V+G H G + +P+ S V  +     SL P   T+ D      +  ++ +   EV++ K  
Sbjct: 188 VLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK-- 244
Query: 266 AGSATLSMAYAAAKFADACLRGLR 289
            G  + ++  + A  A++ ++ LR
Sbjct: 245 -GYTSWAIGLSVADLAESIMKNLR 267

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 115/264 (43%), Gaps = 33/264 (12%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
           P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  +
Sbjct: 19  PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKI 77
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           V       +         +VII AG  ++ G +R +L   N  I K +   + K  P+  
Sbjct: 78  VSS-----KDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 132
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
           + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P      
Sbjct: 133 LLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 188
Query: 218 VVGGHAGVTILPLLSQVKPS----CSLTP---TEIDY-----LTDRIQNGGTEVVEAKTG 265
           V+G H G + +P+ S V  +     SL P   T+ D      +  ++ +   EV++ K  
Sbjct: 189 VLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK-- 245
Query: 266 AGSATLSMAYAAAKFADACLRGLR 289
            G  + ++  + A  A++ ++ LR
Sbjct: 246 -GYTSWAIGLSVADLAESIMKNLR 268

>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 86/211 (40%), Gaps = 18/211 (8%)
Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA--V 98
           +VAV GAAG IG  L        ML K  P++  L L    +   +   +  ++  A  +
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL-LGSERSFQALEGVVMELEDCAFPL 64
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           + G       + A    D  ++    PRK GM R DL  +N  I       +A+   K +
Sbjct: 65  LAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDV 124
Query: 159 -VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 217
            V ++ NP N+   IA   +K     +P+    +T LD  RA   +A+  G     +   
Sbjct: 125 KVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 218 VVGGHAGVTILPLLSQV----KPSCSLTPTE 244
            V G+   T+ P L       +P+  L   E
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELVDME 212

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 21/186 (11%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           +VII AG     G TR DL   N  I+K +  G+ +  P   + +++NPV+    I   V
Sbjct: 90  LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD----ILTYV 145
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 235
             K+  +   R++G    LD  R    + E LG++P      V+G H G + +P+ S V 
Sbjct: 146 VWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEH-GDSSVPIWSGVN 204
Query: 236 PS----CSLTPT--------EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
            +     SL P             +  ++  GG EV++ K   G  + ++  +    A +
Sbjct: 205 VAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEVLDMK---GYTSWAIGLSVTDLARS 261
Query: 284 CLRGLR 289
            L+ L+
Sbjct: 262 ILKNLK 267

>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           +V++ AG  ++ G +R +L   N  I K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 90  VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVD----ILTYV 145
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
             K+  +   R++G  T LD  R    + E L L P      +VG H G + +P+ S V
Sbjct: 146 AWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEH-GDSSVPVWSGV 203

>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 83/212 (39%), Gaps = 20/212 (9%)
Query: 48  KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR 100
           +VAV GAAG IG  L        ML K  P+  +L L ++         +     +    
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDCAFP 63
Query: 101 GFLGQQQLED---ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
              G +  +D   A    D  ++    PRK GM R DL  +N  I       +A+   K 
Sbjct: 64  LLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKD 123
Query: 158 I-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV 216
           + V ++ NP N+   IA   +K     +P+    +T LD  RA   +A+  G     +  
Sbjct: 124 VKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRR 180
Query: 217 PVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
             V G+    + P L       +P+  L   E
Sbjct: 181 MTVWGNHSSIMFPDLFHAEVDGRPALELVDME 212

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 19/185 (10%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           +V++ AG  ++ G +R +L   N  I K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 91  VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVD----ILTYV 146
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AGVTI 227
             K+      R++G  T LD  R    + E LG+ P      V+G H        +GV +
Sbjct: 147 AWKLSGLPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEHGDSSVPVWSGVNV 206
Query: 228 LPLLSQ-VKPSCSLTPTEIDY--LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
             +  Q + P       + D+  +   + +   EV++ K   G  + ++  +AA    + 
Sbjct: 207 AGVFLQGLNPDMGTDKDKEDWKSVHKMVVDSAYEVIKLK---GYTSWAIGMSAADLCQSI 263
Query: 285 LRGLR 289
           L+ LR
Sbjct: 264 LKNLR 268

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 113/264 (42%), Gaps = 33/264 (12%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
           P  K+ V+G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +
Sbjct: 19  PHNKITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKI 77
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           V G     +  +      +V+I AG  ++ G +R +L   N  I K +   I K  P   
Sbjct: 78  VSG-----KDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCK 132
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
           + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+ P      
Sbjct: 133 LLVVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 188
Query: 218 VVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTD-----------RIQNGGTEVVEAKTG 265
           ++G H G + +P+ S V  +  SL     +  TD            + +   EV++ K  
Sbjct: 189 ILGEH-GDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKEVVDSAYEVIKLK-- 245
Query: 266 AGSATLSMAYAAAKFADACLRGLR 289
            G  + ++  + A  A++ ++ LR
Sbjct: 246 -GYTSWAIGLSVADLAESIMKNLR 268

>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 18/187 (9%)
Query: 53  GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA 111
           G+  G  QP+ + L+ I P++ VL         GV  ++       +++  +   + E A
Sbjct: 27  GSVFGKDQPIILVLLDITPMMGVLD--------GVLMELQDC-ALPLLKDVIATDKEEIA 77
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA--KCCPKAI-VNLISNPVNS 168
              +D+ I+   +PR+ GM R DL   N  I K  C+G A  K   K++ V ++ NP N+
Sbjct: 78  FKDLDVAILVGSMPRRDGMERKDLLKANVKIFK--CQGAALDKYAKKSVKVIVVGNPANT 135
Query: 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 228
               A+   K   +   +    +T LD  RA   +A  LG+   +V   ++ G+   T  
Sbjct: 136 NCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQY 192
Query: 229 PLLSQVK 235
           P ++  K
Sbjct: 193 PDVNHAK 199

>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 18/187 (9%)
Query: 53  GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA 111
           G+  G  QP+ + L+ I P++ VL         GV  ++       +++  +   + E A
Sbjct: 26  GSVFGKDQPIILVLLDITPMMGVLD--------GVLMELQDC-ALPLLKDVIATDKEEIA 76
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA--KCCPKAI-VNLISNPVNS 168
              +D+ I+   +PR+ GM R DL   N  I K  C+G A  K   K++ V ++ NP N+
Sbjct: 77  FKDLDVAILVGSMPRRDGMERKDLLKANVKIFK--CQGAALDKYAKKSVKVIVVGNPANT 134
Query: 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 228
               A+   K   +   +    +T LD  RA   +A  LG+   +V   ++ G+   T  
Sbjct: 135 NCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQY 191
Query: 229 PLLSQVK 235
           P ++  K
Sbjct: 192 PDVNHAK 198

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 112/264 (42%), Gaps = 33/264 (12%)
Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
           P  K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H    + T  +
Sbjct: 18  PQNKITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKI 76
Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           V G     +         +VII AG  ++ G +R +L   N  I K +   + K  P   
Sbjct: 77  VSG-----KDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCK 131
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
           + ++SNPV+    I   V  K+  +   R++G    LD  R    + E LG+        
Sbjct: 132 LLVVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGW 187
Query: 218 VVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTD-----------RIQNGGTEVVEAKTG 265
           ++G H G + +P+ S +  +  SL     +  TD           ++ +   EV++ K  
Sbjct: 188 ILGEH-GDSSVPVWSGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLK-- 244
Query: 266 AGSATLSMAYAAAKFADACLRGLR 289
            G  T ++  + A  A++ ++ LR
Sbjct: 245 -GYTTWAIGLSVADLAESIMKNLR 267

>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           IV++ AGV ++ G +R +L   N  + K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 91  IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYV 146
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             K+      R++G    LD  R    +AE LG+ P      ++G H   ++
Sbjct: 147 TWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSV 198

>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           IV++ AGV ++ G +R +L   N  + K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 91  IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYV 146
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             K+      R++G    LD  R    +AE LG+ P      ++G H   ++
Sbjct: 147 TWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSV 198

>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
           IV++ AGV ++ G +R +L   N  + K +   I K  P  I+ ++SNPV+    I   V
Sbjct: 92  IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNPVD----ILTYV 147
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
             K+      R++G    LD  R    + E LG+ P      ++G H   ++
Sbjct: 148 AWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGEHGDSSV 199

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 108/258 (41%), Gaps = 32/258 (12%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAVVRG 101
           K+ V+G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +V G
Sbjct: 23  KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 81
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +      G  +V+I AG  ++ G +R +L   N  I K +   I K  P  I+ +
Sbjct: 82  -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 136
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNPV+    +A     K+      R++G    LD  R    + E LG+        V+G
Sbjct: 137 VSNPVDVLTYVAW----KLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIG 192
Query: 221 GH--------AGVTILPLLSQVKPSCSLTPTEIDY--LTDRIQNGGTEVVEAKTGAGSAT 270
            H        +G+ +  +  ++ P       + D+  L   + +   EV++ K   G  +
Sbjct: 193 EHGDSVPSVWSGMNVASI--KLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKLK---GYTS 247
Query: 271 LSMAYAAAKFADACLRGL 288
            ++  + A  A+  ++ L
Sbjct: 248 WAIGLSVADLAETIMKNL 265

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 108/258 (41%), Gaps = 32/258 (12%)
Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAVVRG 101
           K+ V+G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +V G
Sbjct: 22  KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 80
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +      G  +V+I AG  ++ G +R +L   N  I K +   I K  P  I+ +
Sbjct: 81  -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 135
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNPV+    +A     K+      R++G    LD  R    + E LG+        V+G
Sbjct: 136 VSNPVDVLTYVAW----KLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIG 191
Query: 221 GH--------AGVTILPLLSQVKPSCSLTPTEIDY--LTDRIQNGGTEVVEAKTGAGSAT 270
            H        +G+ +  +  ++ P       + D+  L   + +   EV++ K   G  +
Sbjct: 192 EHGDSVPSVWSGMNVASI--KLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKLK---GYTS 246
Query: 271 LSMAYAAAKFADACLRGL 288
            ++  + A  A+  ++ L
Sbjct: 247 WAIGLSVADLAETIMKNL 264

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	1e-156
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	1e-151
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-144
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	2e-43
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	2e-40
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	2e-39
3tl2_A	315	Malate dehydrogenase; center for structural genomi	4e-39
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	1e-38
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	2e-38
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	2e-38
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	2e-38
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	2e-38
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	3e-38
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	1e-37
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	3e-37
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	3e-36
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	7e-36
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	1e-34
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	1e-34
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	2e-34
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	2e-34
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	4e-34
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	1e-33
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	2e-33
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	5e-33
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	8e-33
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	9e-33
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	9e-33
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	1e-32
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	1e-32
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	2e-32
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	7e-32
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	2e-31
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	2e-30
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	2e-29
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	3e-28
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	4e-08
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	1e-07
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	3e-06
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  438 bits (1129), Expect = e-156
 Identities = 242/266 (90%), Positives = 252/266 (94%)

Query: 39  RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV 98
           RAKGG+PGFKVA+LGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60

Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
           VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120

Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 218
           VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180

Query: 219 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 278
           VGGHAGVTILPLLSQVKP  S T  EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA 
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 240

Query: 279 KFADACLRGLRGDAGVIECAYVASTV 304
           KFADACLRGLRGDAGVIECA+V+S V
Sbjct: 241 KFADACLRGLRGDAGVIECAFVSSQV 266

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  425 bits (1094), Expect = e-151
 Identities = 158/255 (61%), Positives = 196/255 (76%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
           ST+PI AEVFKK G Y+P ++ GVT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181

Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 287
           +PL+SQ  P       ++  LT RIQ  GTEVV+AK GAGSATLSMAYA A+F  + +  
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241

Query: 288 LRGDAGVIECAYVAS 302
           + G  GV+EC++V S
Sbjct: 242 MNGKEGVVECSFVKS 256

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  407 bits (1048), Expect = e-144
 Identities = 157/259 (60%), Positives = 189/259 (72%), Gaps = 4/259 (1%)

Query: 48  KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 105
           KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NP
Sbjct: 62  DATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
           VN+TV IAAEV KK G YD  +L GVT LD++R+NTFVAE+ G  P EV+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL 285
           TILPLLSQV P  S T  E+  LT RIQN GTEVVEAK G GSATLSM  AAA+F  + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 286 RGLRGDAGVIECAYVASTV 304
           R L+G+ GV+ECAYV    
Sbjct: 240 RALQGEQGVVECAYVEGDG 258

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  151 bits (383), Expect = 2e-43
 Identities = 65/258 (25%), Positives = 104/258 (40%), Gaps = 23/258 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRGFLGQ 105
           K+ ++GAAG IG  +A    +  L   L LYD       GV  +I H     +       
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGL--NLTFT 67

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISN 164
             +++ALT    ++   G PRK GMTR+DL   NA I   L + I   CP    V +I N
Sbjct: 68  SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127

Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA 223
           P + T  +            P ++  +  LD  R  + +A+  G+    V      GGH 
Sbjct: 128 PADITGLVTL----IYSGLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH- 182

Query: 224 GVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           G  +             L+ +  +  LT  +   L  R+  GG  +++ +    S+  S 
Sbjct: 183 GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRG--RSSFQSP 240

Query: 274 AYAAAKFADACLRGLRGD 291
           +Y + +   A + G    
Sbjct: 241 SYVSIEMIRAAMGGEAFR 258

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  142 bits (360), Expect = 2e-40
 Identities = 66/257 (25%), Positives = 112/257 (43%), Gaps = 31/257 (12%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHM------DTNA 97
           KV ++GA+G +G   A+L+   P +  L L    +      G+  DI         D N 
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
            V      + ++++    D+VII +GVPRK GM+R DL   NA IV    + IA+ C   
Sbjct: 62  YVESDENLRIIDES----DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK 117

Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
           I  +I+NPV+    +          ++  ++ G+ T LD +R    +A+  G+   EV  
Sbjct: 118 IF-VITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT 172

Query: 217 PVVGGHAGVTILPLLSQVKPS-------CSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA 269
            ++G H G +++PLLS                   ID + + ++  G +++  K   G +
Sbjct: 173 RIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK---GGS 228

Query: 270 TLSMAYAAAKFADACLR 286
               A A        + 
Sbjct: 229 EFGPAAAILNVVRCIVN 245

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  139 bits (352), Expect = 2e-39
 Identities = 65/250 (26%), Positives = 108/250 (43%), Gaps = 24/250 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT----ADISHM---DTNAVVR 100
           KV+V+GAAG +G      + +  +   +   D+ +    T    AD +H    D+N  V 
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV- 60

Query: 101 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
               Q   ED   G D+V+I AG+PR+PG TR DL   NA I++ +   + +     I  
Sbjct: 61  ---RQGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISL 116

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
             SNPV+    +      + G    ++++G    LD  R    ++E      + V+  ++
Sbjct: 117 TTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTIL 172

Query: 220 GGHAGVTILPLLSQVKPSC---SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 276
           G H G   +P+ S+V         +  E + L   +Q    +V+E K   G+     A  
Sbjct: 173 GEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARG 228

Query: 277 AAKFADACLR 286
            A   +A L 
Sbjct: 229 VAHMVEAILH 238

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  138 bits (351), Expect = 4e-39
 Identities = 76/253 (30%), Positives = 124/253 (49%), Gaps = 26/253 (10%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA----DISHM----DTNAVV 99
           KV+V+GA G  G   A L+    L  V+ L D+      T     D+         +A +
Sbjct: 10  KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLEASPVQGFDANI 67

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
            G        D+    D+V+I AG+ RKPGM+RDDL   N+ I+K++   IAK  P AI+
Sbjct: 68  IGTSDYADTADS----DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAII 123

Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
            +++NPV+           K   +  +R++G   +LD  R  TF+A+ L L  +++   V
Sbjct: 124 VVLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFV 179

Query: 219 VGGHAGVTILPLLSQV----KPSCSL-TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
           +GGH G  ++PL+        P  +L     ++ + +R + GG E+V    G GSA  + 
Sbjct: 180 LGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLGNGSAYYAP 237

Query: 274 AYAAAKFADACLR 286
           A +  +  +A L+
Sbjct: 238 AASLVEMTEAILK 250

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  137 bits (348), Expect = 1e-38
 Identities = 69/251 (27%), Positives = 118/251 (47%), Gaps = 24/251 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           KV V+GA G +G  +A  +    +   + + D+ +    G   D+         +  V G
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG 60

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                  ED+    D+ II AG+PR PGM+RDDL   N  IV  + E   +  P + + +
Sbjct: 61  TNDYGPTEDS----DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NP++    +   V  +   +   R++G+  +LD  R  +F+AE L +  R+V   ++G
Sbjct: 117 VANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172

Query: 221 GHAGVTILPLLSQV----KPSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
           GH G T++PL         P   L     I+ + +R +  G E+V+      SA  +   
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGA 229

Query: 276 AAAKFADACLR 286
           AAA+  +A L+
Sbjct: 230 AAAEMTEAILK 240

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  137 bits (347), Expect = 2e-38
 Identities = 65/251 (25%), Positives = 117/251 (46%), Gaps = 24/251 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K++++GA G +G   A  +    L  ++ L D+V     G   D+         +  V G
Sbjct: 4   KISIIGA-GFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYEASPIEGFDVRVTG 61

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                   ++    D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +
Sbjct: 62  TNNYADTANS----DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIM 117

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NP++        +  +V  +  +R++G   +LD  R  TF+A   G+   +V   ++G
Sbjct: 118 VNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMG 173

Query: 221 GHAGVTILPLLSQV----KPSCSL-TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
           GH G  ++PL         P      P  +  + +R + GG E+V      GSA  + A 
Sbjct: 174 GH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPAA 231

Query: 276 AAAKFADACLR 286
           A A+  +A L+
Sbjct: 232 ATAQMVEAVLK 242

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  137 bits (347), Expect = 2e-38
 Identities = 85/256 (33%), Positives = 132/256 (51%), Gaps = 29/256 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+ ++GA G IG  LA L  I  L  V+ L+D+      G   D+         +  VRG
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGMPNGKALDLLQTCPIEGVDFKVRG 64

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
               + LE++    D+VI+ AGVPRKPGM+RDDL  IN  +++T+ EGI   CP A V  
Sbjct: 65  TNDYKDLENS----DVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVIC 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++    I   + +K       +++G+  +LD  R  TF+A+ L +  ++V   V+G
Sbjct: 121 ITNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMG 176

Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
           GH G T++PL          L Q+     L    +D +  R ++GG E+V      GSA 
Sbjct: 177 GH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSAY 234

Query: 271 LSMAYAAAKFADACLR 286
            + A A  + A++ L+
Sbjct: 235 YAPAAAGIQMAESFLK 250

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  136 bits (346), Expect = 2e-38
 Identities = 83/251 (33%), Positives = 123/251 (49%), Gaps = 23/251 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF--- 102
           K+ V+GA G +G   A  +    L   L L DVV     G   D+        V  F   
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYES---GPVGLFDTK 57

Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             G     D     DIVII AG+PRKPGMTR+DL   NAGIVK + + I K     I+ +
Sbjct: 58  VTGSNDYAD-TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNP++    I   V         +R++G+  +LD  R  +F+A  LG+  ++++  V+G
Sbjct: 117 VSNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLG 172

Query: 221 GHAGVTILPLLSQV----KPSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
           GH G  ++P++        P   L P E ID L +R +NGG E+VE     GSA  + A 
Sbjct: 173 GH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQGSAFYAPAS 230

Query: 276 AAAKFADACLR 286
           +  +  ++ + 
Sbjct: 231 SVVEMVESIVL 241

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  136 bits (346), Expect = 2e-38
 Identities = 74/256 (28%), Positives = 123/256 (48%), Gaps = 29/256 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+AV+G+ G IG  +A ++  + L  V+ L+D+      G   DI+H      + + V G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 +  +    D+VII A +P +P   R +L   NA I+ ++ EG+ K CP A V  
Sbjct: 64  TDDYADISGS----DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVIC 119

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++    +    F+KV      ++ G+  +LD  R  TF+A+  G++  +V   V+G
Sbjct: 120 ITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIG 175

Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
           GH G  ++P           LS       +T  +ID +    +    EV +     G+A 
Sbjct: 176 GH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTAY 233

Query: 271 LSMAYAAAKFADACLR 286
            + A AA K A+A L+
Sbjct: 234 FAPAAAAVKMAEAYLK 249

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  136 bits (346), Expect = 3e-38
 Identities = 81/256 (31%), Positives = 129/256 (50%), Gaps = 29/256 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K++++GA G IG  +A+L+    L  V  ++D++     G   D++H      + A + G
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDVY-MFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
               + L+++    D+VII AGVPRKP MTR DL  +NA IV ++ E + K CP A V  
Sbjct: 74  ENNYEYLQNS----DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVIC 129

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++         FK+       ++ G+  +LD  R    ++  LG+ P +V   VVG
Sbjct: 130 ITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVG 185

Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
           GH G  ++PL          LS       +T ++I+ +  +   GG E+VE     GSA 
Sbjct: 186 GH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGSAF 243

Query: 271 LSMAYAAAKFADACLR 286
            + A +A   A A L+
Sbjct: 244 YAPAASAVAMAQAYLK 259

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  134 bits (341), Expect = 1e-37
 Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 28/245 (11%)

Query: 49  VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRGF 102
           + +LGA G +G   A+++ +     +L L         G   D++H       +  + G 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLL-LIARTPGKPQGEALDLAHAAAELGVDIRISGS 59

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
              + +  +    DIV++ AG+ RKPGMTR+ L   NA  +  L E I      AIV + 
Sbjct: 60  NSYEDMRGS----DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVIT 115

Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
           +NPV+        V  K   +  +R++G   +LD  R   ++++ LG+  + V+  V+G 
Sbjct: 116 TNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGM 171

Query: 222 HAGVTILPLLSQVKPSCS-----LTPTEIDYLTDRIQNGGTEVVEAKTGA-----GSATL 271
           H G  + P+              ++  EI+ +     N G ++ E +  +      +  +
Sbjct: 172 H-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLV 230

Query: 272 SMAYA 276
               A
Sbjct: 231 LTVEA 235

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  133 bits (338), Expect = 3e-37
 Identities = 77/256 (30%), Positives = 127/256 (49%), Gaps = 29/256 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+A++G+ G IG  LA L  +  L  V+ L+D+      G   DI+        +A   G
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAESSPVDGFDAKFTG 66

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 +E A    D+VI+ AGVPRKPGM+RDDL  IN  +++ +  GI K  P+A V  
Sbjct: 67  ANDYAAIEGA----DVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVIC 122

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NP++          +K       +++G+  +LD  R   F++E   +   +V V V+G
Sbjct: 123 ITNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLG 178

Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
           GH G +++PL          L  +      +  ++D +  R ++GG E+V      GSA 
Sbjct: 179 GH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSAF 236

Query: 271 LSMAYAAAKFADACLR 286
            + A +A + A++ L+
Sbjct: 237 YAPAASAIQMAESYLK 252

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  131 bits (332), Expect = 3e-36
 Identities = 74/261 (28%), Positives = 123/261 (47%), Gaps = 33/261 (12%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF--- 102
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+     V      
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHV---TSVVDTNVS 65

Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPK 156
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK
Sbjct: 66  VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125

Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
             + +++NP++       +V  +        + G+  MLD  R   +VA+ L + PR+V 
Sbjct: 126 TFIIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181

Query: 216 VPVVGGHAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             V+G H G  ++PL+  +               +T  +++ + +  +  G E+V    G
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-G 239

Query: 266 AGSATLSMAYAAAKFADACLR 286
            GSA  + A +A   A + L 
Sbjct: 240 QGSAYYAPAASAVAMATSFLN 260

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  130 bits (329), Expect = 7e-36
 Identities = 67/261 (25%), Positives = 122/261 (46%), Gaps = 36/261 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
           K+ ++G+ G IG  +A L+    L  V+ L+D+V     G   D SH      +N  V G
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPK 156
                 L  A    D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CP 
Sbjct: 64  SNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119

Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
           A + +++NPV+    +  ++  +       +++G+  +LD  R   ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175

Query: 216 VPVVGGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
             +VG H G  ++ L          L +   +  ++  E++ + DR  N   E+V     
Sbjct: 176 AHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH-- 232

Query: 266 AGSATLSMAYAAAKFADACLR 286
             S  ++ A A  + A++ L+
Sbjct: 233 -ASPYVAPAAAIIEMAESYLK 252

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  127 bits (321), Expect = 1e-34
 Identities = 60/259 (23%), Positives = 103/259 (39%), Gaps = 32/259 (12%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KV ++G  G +G   A  M    +     + DVV   T G   D+           +  G
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +  D     D+V+I AG P+KPG +R DL N N  I+ ++ + +       I  +
Sbjct: 66  -----EYSD-CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    I      K   +  +R++G  T LD  R    + +   +DPR VD  ++G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMG 175

Query: 221 GHAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
            H G +     S                 ++  ++  L D ++N   +++  K   G+  
Sbjct: 176 EH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK---GATF 231

Query: 271 LSMAYAAAKFADACLRGLR 289
             +  A  + + A LR   
Sbjct: 232 YGIGTALMRISKAILRDEN 250

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  126 bits (320), Expect = 1e-34
 Identities = 63/259 (24%), Positives = 107/259 (41%), Gaps = 31/259 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KV ++G  G +G   A  +    +V  L + D+      G   D+ H      T   V+ 
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA 66

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +  D     D+V+I AG  +KPG TR DL + N  I K++   +       I  +
Sbjct: 67  ----GEYSD-CHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLV 121

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    I A    K      +R++G  T+LD  R    ++E   + PR VD  ++G
Sbjct: 122 ATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIG 177

Query: 221 GHAGVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
            H G T LP+ S                     +I+ +  + ++   ++++AK   G+  
Sbjct: 178 EH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATY 233

Query: 271 LSMAYAAAKFADACLRGLR 289
             +A   A+  +A  R   
Sbjct: 234 YGVAMGLARITEAIFRNED 252

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  126 bits (320), Expect = 2e-34
 Identities = 61/259 (23%), Positives = 111/259 (42%), Gaps = 31/259 (11%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KV ++G  G +G   A  M +  +   + + D+    T G   D+S+         +   
Sbjct: 11  KVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSA 69

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +  D     D+V+I AG P+KPG TR DL N N  I+K++ + I       I  +
Sbjct: 70  -----EYSD-AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV 123

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    I      K+  +   R++G  T LD  R    +AE++ +D R V   ++G
Sbjct: 124 AANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179

Query: 221 GH--------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
            H        +   I  + +   VK    +   ++  + + +++   E+++ K   G+  
Sbjct: 180 EHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATF 236

Query: 271 LSMAYAAAKFADACLRGLR 289
             +A A A+ + A L    
Sbjct: 237 YGIATALARISKAILNDEN 255

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  126 bits (318), Expect = 2e-34
 Identities = 54/255 (21%), Positives = 102/255 (40%), Gaps = 22/255 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           +V V+GA G +G      +    +   + L D       G   D +H    A     +  
Sbjct: 8   RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
              +D     D+V+I AG  +KPG TR DL + N  I +++ E +     + +  + +NP
Sbjct: 67  GDYDD-CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNP 125

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-- 222
           V+    I      K      +R++G  T+LD  R    + E   + P+ V   ++G H  
Sbjct: 126 VD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGD 181

Query: 223 ------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 274
                 +   I  +P+   V+        +++ +   +++   +++E K   G+    +A
Sbjct: 182 TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYGIA 238

Query: 275 YAAAKFADACLRGLR 289
              A+   A L    
Sbjct: 239 MGLARVTRAILHNEN 253

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  125 bits (317), Expect = 4e-34
 Identities = 63/255 (24%), Positives = 103/255 (40%), Gaps = 22/255 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           KVA++GA G +G   A  +    +   L + DV      G   D++H    A        
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
              ED     DIV I AG  +KPG TR +L   N  I K +   +       I  + +NP
Sbjct: 66  GTYED-CKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP 124

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-- 222
           V+    I      K      +R++G  T LD  R    ++E  G  P+ V   ++G H  
Sbjct: 125 VD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHGD 180

Query: 223 ------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 274
                 +   +  +P+   V+ + +    E+D + D ++N    ++E K   G+    +A
Sbjct: 181 TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATYYGVA 237

Query: 275 YAAAKFADACLRGLR 289
            + A+   A L    
Sbjct: 238 MSLARITKAILHNEN 252

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  124 bits (314), Expect = 1e-33
 Identities = 67/256 (26%), Positives = 114/256 (44%), Gaps = 31/256 (12%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+ ++G  G +G   A  + +      + L DV      G   D+ H         F  +
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP------FTRR 54

Query: 106 QQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             +       L G D+VI+ AGVP+KPG TR  L   NA ++K +   ++K  P +IV +
Sbjct: 55  ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NPV+    +    F K    DP+++ G  T+LD  R  T +A+  G  PR V V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170

Query: 221 GH--------AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
            H        +G  I  +PL +  +         ++   ++ +    E++E K   G+  
Sbjct: 171 EHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GATH 227

Query: 271 LSMAYAAAKFADACLR 286
            ++A A A   ++   
Sbjct: 228 YAIALAVADIVESIFF 243

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  124 bits (313), Expect = 2e-33
 Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 34/262 (12%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           K+AV+GA G +G  LA       +   + L D+          D+ H      T ++   
Sbjct: 9   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 67

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                  E      D+V+I AG  +KPG +R +L      I+K +   + K  P AI  L
Sbjct: 68  ----DDPEI-CRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYML 122

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           I+NPV+    IA  V +K+      ++ G  T LD  R    +A+  G++ + V   + G
Sbjct: 123 ITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAG 178

Query: 221 GHAGVTILPLLSQV-------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAG 267
            H G + +PL                      L   + + +   ++N   +++  K   G
Sbjct: 179 EH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGK---G 234

Query: 268 SATLSMAYAAAKFADACLRGLR 289
           +   ++  +     +A L    
Sbjct: 235 ATNYAIGMSGVDIIEAVLHDTN 256

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  122 bits (308), Expect = 5e-33
 Identities = 53/250 (21%), Positives = 105/250 (42%), Gaps = 33/250 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           K+  +GA G +G   A    +N  V  + L D+      G   D++H    +D    + G
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 L+ +    +I+++ AG+ RKPGMTR DL + NAGI+K + + I +  P++ + +
Sbjct: 61  GADYSLLKGS----EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ++NP++    +   +  K        + G+   LD  R    +      +       ++G
Sbjct: 117 VTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIG 170

Query: 221 GHAGVTILPLLSQV----KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 276
            H G ++    S      +        + + + + ++    EV++ K   G+     A A
Sbjct: 171 EH-GDSMFVAKSLADFDGEV-------DWEAVENDVRFVAAEVIKRK---GATIFGPAVA 219

Query: 277 AAKFADACLR 286
             +   A + 
Sbjct: 220 IYRMVKAVVE 229

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  121 bits (307), Expect = 8e-33
 Identities = 56/261 (21%), Positives = 107/261 (40%), Gaps = 34/261 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           KV ++G+ G +G   A  + +  +   + L D+          DI H         F   
Sbjct: 2   KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP------FAHP 54

Query: 106 QQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
             +       L G   V++ AGV ++PG TR  L + NA +   +   + +  P+A++ +
Sbjct: 55  VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
            +NPV+    +  +V   +    P R++G  T+LD  R    +AE L + P+ V   V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170

Query: 221 GHAGVTILPLLSQV------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGS 268
            H G + + + S                  +L+P +   + + ++     ++E K   G+
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GA 226

Query: 269 ATLSMAYAAAKFADACLRGLR 289
               +    A+   A L   +
Sbjct: 227 TYYGIGAGLARLVRAILTDEK 247

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  121 bits (307), Expect = 9e-33
 Identities = 45/244 (18%), Positives = 84/244 (34%), Gaps = 23/244 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTPGVTADISHMDTNAVVRGFLGQQ 106
           K+ V+G  G +G    + +    +   L L D+   T G T D+   +   V       +
Sbjct: 16  KITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVE----ISK 70

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
            L        +VI           +  D+   N  + + L   +      +++ + S P 
Sbjct: 71  DLSA-SAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP- 127

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
              V I   V  K+ T+   R++G+   LD  R    +  VL       +V V+G   G 
Sbjct: 128 ---VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ-GE 183

Query: 226 TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL 285
             +   S                  ++ N   E++  K   G  + S+  + A   D+ +
Sbjct: 184 DKVLTWSGQ------EEVVSHTSQVQLSNRAMELLRVK---GQRSWSVGLSVADMVDSIV 234

Query: 286 RGLR 289
              +
Sbjct: 235 NNKK 238

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  121 bits (307), Expect = 9e-33
 Identities = 63/262 (24%), Positives = 112/262 (42%), Gaps = 36/262 (13%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTNAVVRG 101
           KVA++GA G +G   A  M +    + L L DV      G   DI+H    M   ++  G
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 67

Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                   D +   D++++ AG  RKPG TR DL   N  I K + + I K     ++ +
Sbjct: 68  -----DYSD-VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           +SNPV+    I   + +K       +++G  T+LD +R    ++E LG+D + V   ++G
Sbjct: 122 VSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177

Query: 221 GH-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAG 267
            H             AG  I   +   K + +    +   + + ++  G  +++ K   G
Sbjct: 178 EHGDSQLPLWSCTHIAGKNINEYIDDPKCNFT--EEDKKKIAEDVKTAGATIIKNK---G 232

Query: 268 SATLSMAYAAAKFADACLRGLR 289
           +    +A +     +  L+   
Sbjct: 233 ATYYGIAVSINTIVETLLKNQN 254

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  122 bits (307), Expect = 1e-32
 Identities = 59/255 (23%), Positives = 100/255 (39%), Gaps = 33/255 (12%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTN 96
           +V V GAAG I   L        +  K  P++  L L D+        GV  ++   D  
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMEL--QDCA 60

Query: 97  AV-VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
              ++  +   + E A   +D+ I+   +PR+ GM R DL   N  I K     + K   
Sbjct: 61  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120

Query: 156 KAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 214
           K++ V ++ NP N+    A+   K   +   +    +T LD  RA   +A  LG+   +V
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDV 177

Query: 215 DVPVVGGHAGVTILPLLSQV----KPSCSLTPTEI-------DYLTDRIQNGGTEVVEAK 263
              ++ G+   T  P ++      +         +             +Q  G  V++A+
Sbjct: 178 KNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR 237

Query: 264 TGAGSATLSMAYAAA 278
               SA +S A A  
Sbjct: 238 -KLSSA-MSAAKAIC 250

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  121 bits (307), Expect = 1e-32
 Identities = 58/257 (22%), Positives = 106/257 (41%), Gaps = 25/257 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+ V+G  G +G   A+ + +  L   L L DV+     G   D+ H          +  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS 79

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
           +          +VII AG  ++ G +R +L   N  I K +   + K  P+  + ++SNP
Sbjct: 80  KDYSV-TANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP 138

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
           V+    I   V  K+  +   R++G    LD  R    + E LG+ P      V+G H G
Sbjct: 139 VD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-G 193

Query: 225 VTILPLLSQV------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS 272
            + +P+ S V            +        +   +  ++ +   EV++ K   G  + +
Sbjct: 194 DSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---GYTSWA 250

Query: 273 MAYAAAKFADACLRGLR 289
           +  + A  A++ ++ LR
Sbjct: 251 IGLSVADLAESIMKNLR 267

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  121 bits (305), Expect = 2e-32
 Identities = 65/249 (26%), Positives = 99/249 (39%), Gaps = 26/249 (10%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDT----N 96
           +VAV GAAG IG  L        ML K  P++  L L ++        +   M+      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKA-LEGVVMELEDCAF 62

Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+   K
Sbjct: 63  PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122

Query: 157 AI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
            + V ++ NP N+   IA    K     +P+    +T LD  RA   +A+  G     + 
Sbjct: 123 DVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179

Query: 216 VPVVGGHAGVTILPLLSQV----KPSCSLTPTE--IDYLTDRIQNGGTEVVEAKTGAGSA 269
              V G+   T+ P L       +P+  L   E         +   G  +++A+ GA SA
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-GASSA 238

Query: 270 TLSMAYAAA 278
             S A AA 
Sbjct: 239 -ASAANAAI 246

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  119 bits (301), Expect = 7e-32
 Identities = 62/253 (24%), Positives = 93/253 (36%), Gaps = 31/253 (12%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP------GVTADISHMD 94
           +VAV GAAG I   L        ML K  P++  L L ++ N        GV  +I   D
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEI--DD 62

Query: 95  TNA-VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC 153
               ++ G         A    D+ ++    PR PGM R DL   NA I     + I   
Sbjct: 63  CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122

Query: 154 CPK-AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR 212
             +   V ++ NP N+   IA    K   +   K    +  LD  RA + +A   G    
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVS 179

Query: 213 EVDVPVVGGHAGVTILPLLSQV----KPSCSLTPTE---IDYLTDRIQNGGTEVVEAKTG 265
            ++   V G+   T+                +   +    D     +   G  +++A+ G
Sbjct: 180 SIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-G 238

Query: 266 AGSATLSMAYAAA 278
             SA  S A AA 
Sbjct: 239 VSSA-ASAANAAI 250

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  118 bits (298), Expect = 2e-31
 Identities = 48/247 (19%), Positives = 84/247 (34%), Gaps = 15/247 (6%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+ V+G    +G   A+ + +  L   + L DV+     G   D+ H          +  
Sbjct: 23  KITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSG 81

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
           +       G  +V+I AG  ++ G +R +L   N  I K +   I K  P  +  L    
Sbjct: 82  KDYSV-SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL 140

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
                    +   K+      R++G    LD  R    + E LG+    V   V+G H G
Sbjct: 141 GT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVIGQH-G 195

Query: 225 VTILPLLSQVKPSCSLTPT-----EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 279
            ++  + S +  +           E+  L          VV       +       + A 
Sbjct: 196 DSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKGCSVAD 255

Query: 280 FADACLR 286
            A   ++
Sbjct: 256 LAQTIMK 262

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  117 bits (294), Expect = 2e-30
 Identities = 56/260 (21%), Positives = 91/260 (35%), Gaps = 29/260 (11%)

Query: 48  KVAVLGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTN 96
            +AV GAAG I   L        +  +  P+   L L     +     GV  ++   D+ 
Sbjct: 34  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA--LKLLGSERSFQALEGVAMEL--EDSL 89

Query: 97  AV-VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 155
              +R         +    +D  ++    PR PGM R  L +IN  I     + +     
Sbjct: 90  YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149

Query: 156 KAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 214
           K + V ++ NP N+   I     K       K    +T LD  RA   +A   G+   +V
Sbjct: 150 KNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKV 206

Query: 215 DVPVVGGHAGVTILPLLSQVKPSCSLTPTEI-------DYLTDRIQNGGTEVVEAKTGAG 267
               + G+   T +P     K         I       +  T  +Q  G  +++   G  
Sbjct: 207 SNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GRS 265

Query: 268 SATLSMAYAAAKFADACLRG 287
           SA  S A + A    + +  
Sbjct: 266 SA-ASTAVSIADAIKSLVTP 284

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  112 bits (283), Expect = 2e-29
 Identities = 60/261 (22%), Positives = 99/261 (37%), Gaps = 42/261 (16%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHM-----DTNAVVR 100
           KV V+G  G +G   A  + +    S L L D           DI+H       T     
Sbjct: 2   KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG 60

Query: 101 GFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
           G          L    +VI+ AG  +KPG +R DL   NA I + L   I +  P A++ 
Sbjct: 61  GH-------SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLL 113

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPK-RLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
           + SNPV+    +  ++  ++    P   ++G  T+LD  R    +A+  G+D       V
Sbjct: 114 VTSNPVD----LLTDLATQL---APGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYV 166

Query: 219 VGGH-------------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
           +G H             AG+ +   +                + +  +N    ++E K  
Sbjct: 167 LGEHGDSEVLAWSSAMVAGMPVADFMQAQNL--PWNEQVRAKIDEGTRNAAASIIEGK-- 222

Query: 266 AGSATLSMAYAAAKFADACLR 286
             +    +  A A+  +A LR
Sbjct: 223 -RATYYGIGAALARITEAVLR 242

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  109 bits (275), Expect = 3e-28
 Identities = 52/256 (20%), Positives = 96/256 (37%), Gaps = 24/256 (9%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
           K+ ++G  G +G  +A  +    +       D           D      N    G +  
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 106 QQLEDALTGMDIVIIPAGVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 L   D+VI   G  +     P   R       + +V+++   + +     ++ +
Sbjct: 62  NDWAA-LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
           ISNPV+    +   +F+ V  +   +++G  T+LD  R    V E   LDPR V    +G
Sbjct: 121 ISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLG 176

Query: 221 GHAGVTILPLLSQV----KPSCSLTPT---EIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
            H G +     S V    +P  +L      ++  + +  + GG  V+  K   G  +  +
Sbjct: 177 EH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GYTSYGV 232

Query: 274 AYAAAKFADACLRGLR 289
           A +A + A A +    
Sbjct: 233 ATSAIRIAKAVMADAH 248

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 45/210 (21%)

Query: 45  PGFKVAVLGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTN 96
           P  K+ ++GA G        ++ L K   L  S + L D+    ++     A     +  
Sbjct: 2   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 60

Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI-------------- 142
           A ++ F     L+D +   D VI  A V     + +        G               
Sbjct: 61  ADLK-FEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSD 119

Query: 143 ------------VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
                          +   I K  PKA     +NP+             V    P + +G
Sbjct: 120 YYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPI-FEGTTL------VTRTVPIKAVG 172

Query: 191 VTMLDVVRANTFVAEVLGLDPREVDVPVVG 220
                       + E LGL+  +VD  V G
Sbjct: 173 FC--HGHYGVMEIVEKLGLEEEKVDWQVAG 200

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 36/202 (17%), Positives = 67/202 (33%), Gaps = 28/202 (13%)

Query: 47  FKVAVLGAAGGIG---QPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGF 102
            K+A +G  G  G     ++ L     +   + LYD+          I +   N   R +
Sbjct: 6   IKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWR-Y 63

Query: 103 LGQQQLEDALTGMDIVIIPAGV------------PRKPGMTRDDLFNINAG--------- 141
                L+ AL+  DIVII                P + G+ +     +  G         
Sbjct: 64  EAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAV 123

Query: 142 -IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN 200
            I   +   I    P++ V   +NP++    +  +VF  +        +  T   +    
Sbjct: 124 PIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEMV 183

Query: 201 TFVAEVLGLDPREVDVPVVGGH 222
           T    +      ++ V V+G +
Sbjct: 184 TERLGIEVPRREDIRVNVLGIN 205

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 40/218 (18%)

Query: 46  GFKVAVLGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTNA 97
            F + + G  G    P   L +L  +    +  L LYD      +      D+   +   
Sbjct: 28  SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAP 86

Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGI--------------- 142
            +  F      E+A T +D V+    V +      D+   +  G+               
Sbjct: 87  DIE-FAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGM 145

Query: 143 -----VKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV 197
                V  + + + K  P A +   SNP          +          ++L +  +  V
Sbjct: 146 RSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNS------KILNICDM-PV 198

Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 235
                +A++LGL  R+    +   + G+      + ++
Sbjct: 199 GIEDRMAQILGLSSRKE---MKVRYYGLNHFGWWTSIQ 233

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 43.6 bits (102), Expect = 4e-05
 Identities = 40/242 (16%), Positives = 74/242 (30%), Gaps = 40/242 (16%)

Query: 46  GFKVAVLGA----AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTN 96
             K+A +G        + + L       P V  L L D+         +  +     +  
Sbjct: 7   RLKIATIGGGSSYTPELVEGLIKRYHELP-VGELWLVDIPEGKEKLEIVGALAKRMVEKA 65

Query: 97  AVVRGFLGQQQLEDALTGMDIVIIPAGV------------PRKPGMTRDDLFNI------ 138
            V            AL G D V     V            P K G+   +          
Sbjct: 66  GVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKG 125

Query: 139 --NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDV 196
                ++  +   + + CP A +   +NP            K+       +++G+  +  
Sbjct: 126 LRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQE------KVVGLCNV-P 178

Query: 197 VRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGG 256
           +     VA++LG+D   V +   G +  V  L +         +T   ID +    ++G 
Sbjct: 179 IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV---EVTEKVIDLVAHPDRSGV 235

Query: 257 TE 258
           T 
Sbjct: 236 TM 237

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 40/292 (13%), Positives = 73/292 (25%), Gaps = 104/292 (35%)

Query: 4   PTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKG----GSPGF-KVAVLGAA--- 55
                NQ  A+       P L++      L  +   AK     G  G  K   +      
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLR---QALLELR-PAKNVLIDGVLGSGK-TWVALDVCL 172

Query: 56  ---------GGI-----GQ---PLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----- 93
                      I          P  +L  +  L+  +        P  T+   H      
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-------DPNWTSRSDHSSNIKL 225

Query: 94  ---DTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI 150
                 A +R  L  +  E+ L    +V+              ++   NA         +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCL----LVL-------------LNVQ--NAKAWNAF--NL 264

Query: 151 AKCCPKAIV----NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEV 206
             C  K ++      +++ +++       +     T  P  +  +           + + 
Sbjct: 265 -SC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-----------LLKY 310

Query: 207 LGLD----PREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQN 254
           L       PREV          +T  P         S+    I        N
Sbjct: 311 LDCRPQDLPREV----------LTTNPRR------LSIIAESIRDGLATWDN 346

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	100.0
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	100.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	100.0
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	100.0
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.93
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	99.92
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.91
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.96
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.72
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.69
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.67
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	98.67
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	98.66
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.64
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	98.57
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.54
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.53
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	98.52
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.51
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.51
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.51
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	98.5
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.49
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	98.49
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.47
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.46
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	98.45
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.42
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	98.42
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.42
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	98.41
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	98.41
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.41
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	98.4
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	98.39
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.38
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.38
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	98.38
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	98.36
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	98.36
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.36
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	98.35
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	98.35
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	98.34
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.34
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.34
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	98.34
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	98.34
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.32
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	98.3
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	98.29
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.29
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	98.29
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	98.29
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.28
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	98.28
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	98.27
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	98.27
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	98.27
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	98.26
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.25
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	98.23
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	98.22
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	98.21
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	98.21
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	98.2
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	98.2
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	98.2
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	98.19
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	98.19
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	98.19
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	98.18
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	98.18
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.17
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	98.15
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.15
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.15
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	98.15
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	98.14
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.14
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.13
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.13
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.13
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	98.12
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.12
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.12
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	98.11
1xq6_A	253	Unknown protein; structural genomics, protein stru	98.11
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.11
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	98.11
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	98.11
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	98.11
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	98.11
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.11
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.09
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.09
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.08
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	98.07
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.07
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.07
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.07
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	98.06
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	98.06
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.06
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.05
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	98.05
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	98.04
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.04
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	98.04
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	98.04
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.04
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.03
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.02
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.02
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	98.0
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.0
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	98.0
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.99
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	97.99
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.97
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	97.96
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	97.96
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.94
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	97.93
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	97.93
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	97.93
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.93
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.92
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.92
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.92
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.91
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	97.91
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.9
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.9
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.9
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.87
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.87
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.86
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	97.86
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.86
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	97.85
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.85
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.85
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.83
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	97.83
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.83
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.83
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.82
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.81
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.81
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.8
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.8
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	97.8
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.8
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	97.8
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.79
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.79
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	97.79
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.78
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.76
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.76
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.76
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.76
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.75
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.75
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.74
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.74
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.73
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.73
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.73
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.73
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.73
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.72
4f6c_A	427	AUSA reductase domain protein; thioester reductase	97.72
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.72
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.72
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.71
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.71
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.71
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.7
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.7
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.7
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.7
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.69
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.69
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.69
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.69
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.69
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.68
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.68
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.68
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.67
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.67
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.66
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.66
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	97.66
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.65
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.65
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.65
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.64
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.64
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.63
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.61
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.61
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.61
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.59
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.59
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.59
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.59
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.59
4f6l_B	508	AUSA reductase domain protein; thioester reductase	97.58
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.58
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.58
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.58
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.58
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.58
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.57
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.57
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.57
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.57
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.57
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.57
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.57
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.57
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.56
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.56
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.56
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.56
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.56
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.55
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.55
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.55
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.55
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.55
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.55
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.55
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.55
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.54
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.54
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.54
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.53
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.53
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.52
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.52
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.52
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.52
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.51
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	97.51
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.51
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.51
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.5
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.5
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.5
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.49
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.49
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.49
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.49
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.48
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.47
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	97.46
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.46
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.46
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.46
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.46
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.45
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.45
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.45
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.43
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.43
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.43
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.43
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.42
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.42
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.41
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.41
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.41
1spx_A	278	Short-chain reductase family member (5L265); paral	97.41
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.41
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.4
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.4
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.4
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.39
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.39
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.39
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.38
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.38
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.38
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.38
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.37
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.37
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.37
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.36
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.35
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.34
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.34
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.34
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.33
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.33
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.33
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	97.32
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.32
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.32
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.32
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.31
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.31
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.31
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.31
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.3
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.3
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.3
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.29
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.29
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.29
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.29
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.29
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.28
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.28
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.28
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.28
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.27
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.26
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.26
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.25
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.25
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.24
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.23
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.23
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.23
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.22
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.22
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.21
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.21
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.21
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.2
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.2
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.2
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.2
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.19
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	97.19
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.18
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.18
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.18
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.17
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.16
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.16
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	97.15
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.15
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	97.14
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	97.13
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.13
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.13
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.12
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.11
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.11
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.1
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.08
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.08
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.08
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.06
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.06
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	97.06
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.06
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.05
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.05
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.04
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	97.04
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.04
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	97.03
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.02
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.08
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.02
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.01
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.0
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.99
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.98
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.98
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.97
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.95
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.95
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.94
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	96.94
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.94
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.93
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.93
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.93
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.91
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.89
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.87
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.86
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.86
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.85
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.84
4e4y_A	244	Short chain dehydrogenase family protein; structur	96.82
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.82
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.77
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.77
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.74
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.74
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.74
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.73
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.73
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.73
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.72
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.72
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.71
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.7
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.69
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.69
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.67
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.63
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.62
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.62
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.62
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	96.61
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	96.61
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.6
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.6
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.6
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	96.6
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.57
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	96.56
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.52
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.5
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.46
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.45
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.45
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.43
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	96.41
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.4
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	96.4
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.39
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.37
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.36
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	96.36
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.35
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	96.35
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.34
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.34
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.32
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.31
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.31
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.3
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.27
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.27
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.27
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.25
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	96.23
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	96.21
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.2
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	96.18
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	96.18
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	96.17
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.16
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.15
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.14
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.13
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	96.13
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.12
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.04
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	96.04
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.04
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.03

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=5.4e-58  Score=428.90  Aligned_cols=253  Identities=60%  Similarity=0.940  Sum_probs=227.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      |||+||||+|+||+++++.|+++ ++.+||+|+|+++ +.|+++||+|......+..+.++++ +++++|||+||+++|.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~-~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDA-TPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCC-HHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCc-HHHhCCCCEEEEeCCC
Confidence            69999997799999999999887 7889999999987 7799999999864345554433334 5899999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCC-CCCcEEEeeehhhHHHHHHH
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY-DPKRLLGVTMLDVVRANTFV  203 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~-p~~kviG~t~Lds~R~~~~l  203 (305)
                      |+++||+|+|++..|+++++++++.|.++||+++++++|||+|++|+++++++ +.+|+ |++||||+|.||++|++++|
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~~-k~sg~~p~~rv~G~~~LD~~R~~~~l  158 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVL-KKAGVYDKNKLFGVTTLDIIRSNTFV  158 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHH-HHTTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHHH-HHcCCCCcceEEEEechhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999876654 45677 99999999999999999999


Q ss_pred             HHHhCCCCcceeEEEEccc-CCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHHHHHH
Q 021932          204 AEVLGLDPREVDVPVVGGH-AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFAD  282 (305)
Q Consensus       204 a~~l~v~~~~V~~~vlG~h-g~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~  282 (305)
                      |+++|++|++|++|||||| |+ |+||+||++ -+.++++++|++|.++|+++|++|++.|.|+|+++||+|+|++++++
T Consensus       159 a~~lgv~~~~v~~~V~G~Hsg~-t~vp~~S~~-~g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~  236 (312)
T 3hhp_A          159 AELKGKQPGEVEVPVIGGHSGV-TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGL  236 (312)
T ss_dssp             HHHHTCCGGGCCCCEEECSSGG-GEEECGGGC-TTCCCCHHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHH
T ss_pred             HHHhCcChhHcceeEEeccCCC-ceeeecccC-CCCCCCHHHHHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHH
Confidence            9999999999999999999 66 999999998 32358888999999999999999999877779999999999999999


Q ss_pred             HHHccCCCCCceeEEEEEeeC
Q 021932          283 ACLRGLRGDAGVIECAYVAST  303 (305)
Q Consensus       283 ai~~~~~~~~~i~~~a~v~s~  303 (305)
                      +|+.++++++.+++|||++++
T Consensus       237 ai~~~l~~~~~v~~~s~~~g~  257 (312)
T 3hhp_A          237 SLVRALQGEQGVVECAYVEGD  257 (312)
T ss_dssp             HHHHHHTTCSSCEEEEEEECC
T ss_pred             HHHHHcCCCCceEEEEEecCC
Confidence            997777777889999999863

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=3.1e-55  Score=410.88  Aligned_cols=256  Identities=61%  Similarity=1.009  Sum_probs=236.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      |||+||||+|+||+++++.|+..+++.||+|+|+++.++.++||.|.....+++.+.+++|++++++|||+||+++|.|+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            59999998899999999999999988899999998878889999997644456654344578889999999999999999


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHHHHH
Q 021932          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEV  206 (305)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~la~~  206 (305)
                      ++|++|.|++.+|+++++++++.|++++|+++++++|||+|++|+++++++++.++||++||||+|.||+.|+++++|++
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~  160 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL  160 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888999999999999999999999999999999


Q ss_pred             hCCCCcceeEEEEccc-CCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHHHHHHHHH
Q 021932          207 LGLDPREVDVPVVGGH-AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL  285 (305)
Q Consensus       207 l~v~~~~V~~~vlG~h-g~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~ai~  285 (305)
                      +|++|++|+++||||| |+ +++|+||++++...+++++++++.++++++|++|++.|.|+|++.|++|.++++++++|+
T Consensus       161 l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~ai~  239 (314)
T 1mld_A          161 KGLDPARVSVPVIGGHAGK-TIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLV  239 (314)
T ss_dssp             TTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHH
T ss_pred             hCcChHhEEEEEccCCCCC-cEeeecccCCCcccCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHH
Confidence            9999999999999999 77 999999999864458888899999999999999999887889999999999999999999


Q ss_pred             ccCCCCCceeEEEEEeeC
Q 021932          286 RGLRGDAGVIECAYVAST  303 (305)
Q Consensus       286 ~~~~~~~~i~~~a~v~s~  303 (305)
                      +|++|++.+++|+|++..
T Consensus       240 ~~~~g~~~v~~~~~~~g~  257 (314)
T 1mld_A          240 DAMNGKEGVVECSFVKSQ  257 (314)
T ss_dssp             HHHHTCTTCEEEEEEECC
T ss_pred             cCcCCCcceEEEEEeCCc
Confidence            999888789999887753

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=1.5e-55  Score=415.26  Aligned_cols=243  Identities=24%  Similarity=0.385  Sum_probs=215.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      ..+.+||+|||| |.||+++++.|+..++++||+|+|+++  ++|+++||+|...+.....+..++|+ ++++|||+||+
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiVvi   93 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLVII   93 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEEEE
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEEEE
Confidence            345679999998 999999999999999999999999987  68999999998532222111224577 68999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHH
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~  199 (305)
                      ++|.|+++||+|+|++.+|++++++++++|+++||+++++++|||+|++|+++    ++.+++|++||||+ |.||++|+
T Consensus        94 ~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvdi~t~~~----~k~sg~p~~rviG~gt~LD~~R~  169 (331)
T 4aj2_A           94 TAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVA----WKISGFPKNRVIGSGCNLDSARF  169 (331)
T ss_dssp             CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHH
T ss_pred             ccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHHhCCCHHHEEeeccccHHHHH
Confidence            99999999999999999999999999999999999999999999999998764    66779999999999 99999999


Q ss_pred             HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC------------CCChhHHHHHHHHHHhchhhhhccccCCC
Q 021932          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (305)
Q Consensus       200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~g~~i~~~k~gkg  267 (305)
                      ++++|+++|++|++|++|||||||+ ++||+||++++.+            .+++++|++|.++|+++|++|++.|   |
T Consensus       170 ~~~la~~lgv~~~~V~~~ViGeHG~-s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---g  245 (331)
T 4aj2_A          170 RYLMGERLGVHPLSCHGWVLGEHGD-SSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---G  245 (331)
T ss_dssp             HHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHHH---S
T ss_pred             HHHHHHHhCCCHHHCEEeEEecCCC-ceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhcC---C
Confidence            9999999999999999999999999 9999999998753            1346779999999999999999965   7


Q ss_pred             CchhHHHHHHHHHHHHHHccCCCCCceeEEE
Q 021932          268 SATLSMAYAAAKFADACLRGLRGDAGVIECA  298 (305)
Q Consensus       268 ~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a  298 (305)
                      +|+||+|+++++++++|++|++   .+++||
T Consensus       246 ~t~~a~a~a~a~~~~ail~d~~---~~~~vs  273 (331)
T 4aj2_A          246 YTSWAIGLSVADLAESIMKNLR---RVHPIS  273 (331)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCC---EEEEEE
T ss_pred             CCchhHHHHHHHHHHHHHhCCC---CeEEEE
Confidence            8999999999999999999964   677765

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=2.5e-55  Score=407.32  Aligned_cols=233  Identities=23%  Similarity=0.377  Sum_probs=209.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC----CceEEEEecCCCHHHHhCCCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      |||+|||| |+||+++|++|+.+++++||+|||+++  ++|+++||+|+..    .+.+..   ++|| ++++|||+||+
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~---~~d~-~~~~~aDvVvi   75 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GADY-SLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEec---CCCH-HHhCCCCEEEE
Confidence            79999998 999999999999999999999999987  7899999999753    233332   4576 78999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHH
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~  199 (305)
                      +||.||+|||+|+|++..|++|+++++++|.+++|+++++++|||+|+|||++    ++.+|+|++|+||+ |.||++||
T Consensus        76 tAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~i~----~k~sg~p~~rvig~gT~LDs~R~  151 (294)
T 2x0j_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSSCCTTSEEECCHHHHHHHH
T ss_pred             ecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcchhhHHhh----HHHcCCChhhEEEeeeEEeHHHH
Confidence            99999999999999999999999999999999999999999999999999865    77899999999999 89999999


Q ss_pred             HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHHH
Q 021932          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK  279 (305)
Q Consensus       200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~  279 (305)
                      +++|++.+++++.  +++||||||+ |++|+||++++.+.   .+++++.++++++|++|++.   ||+|+||+|+++++
T Consensus       152 ~~~l~~~~~~~~~--~~~V~G~HGd-t~vp~~S~~~v~g~---~~~~~i~~~~~~~g~eIi~~---kGst~~a~a~a~~~  222 (294)
T 2x0j_A          152 KERLYNAGARNIR--RAWIIGEHGD-SMFVAKSLADFDGE---VDWEAVENDVRFVAAEVIKR---KGATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHHHTTCEEEC--CCCEEBCSST-TCEECGGGCCEESC---CCHHHHHHHHHTHHHHHHHH---HSSCCHHHHHHHHH
T ss_pred             HHHHhhcccCCcc--eeEEEecCCC-cEEEeeeccCCCCc---hhHHHHHHHHhhhheEEEec---CcccchhHHHHHHH
Confidence            9999999876543  6899999999 99999999998542   35778999999999999995   48999999999999


Q ss_pred             HHHHHHccCCCCCceeEEEEE
Q 021932          280 FADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       280 ~~~ai~~~~~~~~~i~~~a~v  300 (305)
                      ++++|++|+   +.++|||..
T Consensus       223 ~~~ail~d~---~~v~~~s~~  240 (294)
T 2x0j_A          223 MVKAVVEDT---GEIIPTSMI  240 (294)
T ss_dssp             HHHHHHTTC---CCEEEEEEE
T ss_pred             HHHHHHcCC---CcEEEEEEE
Confidence            999999986   478888764

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=2.1e-54  Score=405.21  Aligned_cols=246  Identities=30%  Similarity=0.482  Sum_probs=220.6

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC--C--Cchhhhhhhccc----CCceEEEEecCCCHHHHhC
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV--N--TPGVTADISHMD----TNAVVRGFLGQQQLEDALT  113 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~--~--~~g~~~DL~~~~----~~~~v~~~~~t~d~~~al~  113 (305)
                      |..+.+||+|||+ |.+|+++++.|+..++ ++|+|+|++  +  ++|.++||.|..    ...++..   ++|+ ++++
T Consensus         4 m~~~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~---t~d~-~a~~   77 (315)
T 3tl2_A            4 MTIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG---TSDY-ADTA   77 (315)
T ss_dssp             CCCCCCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGT
T ss_pred             cccCCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE---cCCH-HHhC
Confidence            4445679999998 9999999999999999 899999998  4  678899999874    2334553   3465 8999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-e
Q 021932          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-T  192 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t  192 (305)
                      |||+||+++|.|+++|++|.|++.+|+++++++++++.++||+++++++|||+|++|+++    ++.+|+|++||||+ |
T Consensus        78 ~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~----~k~sg~p~~rviG~gt  153 (315)
T 3tl2_A           78 DSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSV----FKEAGFPKERVIGQSG  153 (315)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCH
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHH----HHhcCCChHHEEeecc
Confidence            999999999999999999999999999999999999999999999999999999999875    56679999999999 9


Q ss_pred             ehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-----CCChhHHHHHHHHHHhchhhhhccccCCC
Q 021932          193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (305)
Q Consensus       193 ~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-----~~~~~~~~~i~~~v~~~g~~i~~~k~gkg  267 (305)
                      .||++|+++++|+++|++|++|++|||||||+ |+||+||++++.+     .++++++++|.++|+++|++|++++ |||
T Consensus       154 ~LD~~R~~~~la~~lgv~~~~v~~~viG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~~-~kg  231 (315)
T 3tl2_A          154 VLDTARFRTFIAQELNLSVKDITGFVLGGHGD-DMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLL-GNG  231 (315)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEBCSGG-GCEECGGGCEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             CcHHHHHHHHHHHHhCcCHHHceeeEecCCCC-cceeecccCeECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence            99999999999999999999999999999999 9999999999864     2567778999999999999999963 689


Q ss_pred             CchhHHHHHHHHHHHHHHccCCCCCceeEEE-EEee
Q 021932          268 SATLSMAYAAAKFADACLRGLRGDAGVIECA-YVAS  302 (305)
Q Consensus       268 ~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a-~v~s  302 (305)
                      +++||+|+++++++++|++|.   +.++||| |++.
T Consensus       232 st~~a~a~a~~~~~~ail~~~---~~v~~~s~~~~g  264 (315)
T 3tl2_A          232 SAYYAPAASLVEMTEAILKDQ---RRVLPAIAYLEG  264 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTC---CEEEEEEEEEES
T ss_pred             cchHHHHHHHHHHHHHHHcCC---CcEEEEEEeccC
Confidence            999999999999999999984   5799987 5543

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=1.4e-54  Score=406.12  Aligned_cols=242  Identities=28%  Similarity=0.488  Sum_probs=209.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC--ceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |||+|||+ |.||+++++.|++.++++||+|+|+++  ++|+++||+|....  ...+.. ++++ +++++|||+||+++
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~-~~~~-~~a~~~aDvVii~a   77 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVT-GTND-YGPTEDSDVCIITA   77 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEE-EESS-SGGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEE-ECCC-HHHhCCCCEEEECC
Confidence            69999998 999999999999999989999999988  68899999997521  123322 1234 48999999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-ehhhHHHHH
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANT  201 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t-~Lds~R~~~  201 (305)
                      |.|+++||+|.|++..|+++++++++.|+++||+++++++|||+|++|+++    ++.+|||++||||+| .||++|+++
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~----~k~~g~p~~rviG~~t~LD~~R~~~  153 (314)
T 3nep_X           78 GLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVA----YEASGFPTNRVMGMAGVLDTGRFRS  153 (314)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHH----HHHHTCCGGGEEECCHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHHH----HHhcCCChHHEEeecCchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999875    556799999999996 999999999


Q ss_pred             HHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-----CCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHH
Q 021932          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA  276 (305)
Q Consensus       202 ~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-----~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a  276 (305)
                      ++|+++|++|++|++|||||||+ |+||+||++++.+     .++++++++|.++|+++|++|+++| |+ ++.||+|++
T Consensus       154 ~la~~lgv~~~~v~~~ViG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g~-sa~~a~a~a  230 (314)
T 3nep_X          154 FIAEELDVSVRDVQALLMGGHGD-TMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM-GT-SAWYAPGAA  230 (314)
T ss_dssp             HHHHHHTCCGGGEEEEEEESSGG-GEEEEEEEEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SS-CCCHHHHHH
T ss_pred             HHHHHhCcCHHHeEEEEECCCCC-cEEeeeecCeECcEehhhccCHHHHHHHHHHHHHhHHHHHhcc-CC-cHHHHHHHH
Confidence            99999999999999999999999 9999999999864     2466778999999999999999987 44 899999999


Q ss_pred             HHHHHHHHHccCCCCCceeEEE-EEe
Q 021932          277 AAKFADACLRGLRGDAGVIECA-YVA  301 (305)
Q Consensus       277 ~~~~~~ai~~~~~~~~~i~~~a-~v~  301 (305)
                      +++++++|++|.   +.++||| |++
T Consensus       231 ~~~~~~ail~~~---~~v~~~s~~~~  253 (314)
T 3nep_X          231 AAEMTEAILKDN---KRILPCAAYCD  253 (314)
T ss_dssp             HHHHHHHHHHTC---CEEEEEEEEEE
T ss_pred             HHHHHHHHHcCC---CeEEEEEEEec
Confidence            999999999984   5799986 554

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=6.2e-55  Score=410.22  Aligned_cols=243  Identities=24%  Similarity=0.400  Sum_probs=201.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC-ceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      ..+||+|||| |.||+++++.|+..++++||+|+|+++  ++|+++||+|...+ ..++..  +.++ ++++|||+||++
T Consensus         8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~--~~~~-~a~~~aDiVvi~   83 (326)
T 3vku_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIY--SAEY-SDAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEE--ECCG-GGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEE--ECcH-HHhcCCCEEEEC
Confidence            3469999998 999999999999999999999999987  68999999998532 344443  2354 889999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHH
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~  200 (305)
                      +|.|+++||+|.|++.+|+++++++++.|+++||+++++++|||+|++|+++    ++.+++|++||||+ |.||++|++
T Consensus        84 ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi~t~~~----~k~~g~p~~rviG~gt~LD~~R~~  159 (326)
T 3vku_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYAT----WKLSGFPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHHHHHHH----HHhcCCCHHHeeeecccCcHHHHH
Confidence            9999999999999999999999999999999999999999999999998764    67789999999999 999999999


Q ss_pred             HHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-CC----------ChhHHHHHHHHHHhchhhhhccccCCCCc
Q 021932          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-SL----------TPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (305)
Q Consensus       201 ~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~~----------~~~~~~~i~~~v~~~g~~i~~~k~gkg~t  269 (305)
                      +++|+++|++|++|++|||||||+ |+||+||++++.+ ++          +++++++|.++|+++|++|++.   ||+|
T Consensus       160 ~~la~~lgv~~~~V~~~ViGeHGd-t~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---kG~t  235 (326)
T 3vku_A          160 QSIAKMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKL---KGAT  235 (326)
T ss_dssp             HHHHHHHTSCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHH---HSCC
T ss_pred             HHHHHHhCCCHHHCeEEEEcCCCC-eeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc---CCCc
Confidence            999999999999999999999999 9999999999864 11          4567899999999999999995   4899


Q ss_pred             hhHHHHHHHHHHHHHHccCCCCCceeEE-EEEee
Q 021932          270 TLSMAYAAAKFADACLRGLRGDAGVIEC-AYVAS  302 (305)
Q Consensus       270 ~~s~A~a~~~~~~ai~~~~~~~~~i~~~-a~v~s  302 (305)
                      +||+|+++++++++|++|   ++.++|| +|++.
T Consensus       236 ~~a~a~a~~~~~~ail~~---~~~v~~~s~~~~g  266 (326)
T 3vku_A          236 FYGIATALARISKAILND---ENAVLPLSVYMDG  266 (326)
T ss_dssp             CHHHHHHHHHHHHHHHTT---CCEEEEEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHhcC---CCceEEEEeeccC
Confidence            999999999999999998   4579996 45553

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=1.3e-54  Score=408.28  Aligned_cols=244  Identities=25%  Similarity=0.362  Sum_probs=218.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC--ceEEEEecCCCHHHHhCCCCEEE
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      .+++||+|||+ |.||+++++.|+..+++++|+|+|+++  ++|+++||+|....  ..++.+  ++++ ++++|||+||
T Consensus         3 ~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~--~~~~-~a~~~aDvVv   78 (326)
T 3pqe_A            3 KHVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS--YGTY-EDCKDADIVC   78 (326)
T ss_dssp             CSCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEE--EECG-GGGTTCSEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEE--eCcH-HHhCCCCEEE
Confidence            45679999998 999999999999999989999999987  68999999997422  344543  2355 7999999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHH
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVR  198 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R  198 (305)
                      +++|.|+++|++|.|++..|+++++++++.|+++||+++++++|||+|++|+++    ++.++||++||||+ |.||++|
T Consensus        79 i~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~----~k~~g~p~~rviG~gt~LD~~R  154 (326)
T 3pqe_A           79 ICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYAT----WKFSGLPKERVIGSGTTLDSAR  154 (326)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHH
T ss_pred             EecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHH----HHhcCCCHHHEEeeccccHHHH
Confidence            999999999999999999999999999999999999999999999999998764    66789999999999 9999999


Q ss_pred             HHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C----------CChhHHHHHHHHHHhchhhhhccccCCC
Q 021932          199 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----------LTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (305)
Q Consensus       199 ~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~----------~~~~~~~~i~~~v~~~g~~i~~~k~gkg  267 (305)
                      ++++||+++|++|++|++|||||||+ |+||+||++++.+ +          ++++++++|.++|+++|++|++.   ||
T Consensus       155 ~~~~la~~lgv~~~~V~~~V~GeHG~-t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---kG  230 (326)
T 3pqe_A          155 FRFMLSEYFGAAPQNVCAHIIGEHGD-TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK---KG  230 (326)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHH---HS
T ss_pred             HHHHHHHHhCCCHHHceeeeeecCCC-ceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeC---CC
Confidence            99999999999999999999999999 9999999999864 1          15667899999999999999995   48


Q ss_pred             CchhHHHHHHHHHHHHHHccCCCCCceeEEE-EEee
Q 021932          268 SATLSMAYAAAKFADACLRGLRGDAGVIECA-YVAS  302 (305)
Q Consensus       268 ~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a-~v~s  302 (305)
                      +|+||+|+|+++++++|++|.   +.++||| |++.
T Consensus       231 ~t~~a~a~a~~~~~~ail~~~---~~v~~~s~~~~g  263 (326)
T 3pqe_A          231 ATYYGVAMSLARITKAILHNE---NSILTVSTYLDG  263 (326)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTC---CEEECCEEEEES
T ss_pred             CcHHHHHHHHHHHHHHHhcCC---CcEEEEEEeecc
Confidence            999999999999999999984   5789864 6654

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=2.9e-54  Score=400.68  Aligned_cols=235  Identities=23%  Similarity=0.368  Sum_probs=213.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC----CceEEEEecCCCHHHHhCCCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      |||+|||| |.+|+++++.|+..++++||+|+|+++  ++|+++|+.|...    ..++..   ++| +++++|||+||+
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d-~~a~~~aDiVVi   75 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE---eCC-HHHhCCCCEEEE
Confidence            69999999 999999999999999989999999987  6788999998752    223443   346 589999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHH
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~  199 (305)
                      ++|.|+++|++|.|++.+|++++++++++|.++||+++++++|||+|++|+++    ++.++||++||||+ |.||++||
T Consensus        76 aag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t~~~----~k~~g~p~~rviG~gt~LD~~R~  151 (294)
T 1oju_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSCCCTTSEEECSHHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHHHHH----HHhcCCCHHHEeecccccHHHHH
Confidence            99999999999999999999999999999999999999999999999998764    67899999999999 79999999


Q ss_pred             HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHHH
Q 021932          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK  279 (305)
Q Consensus       200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~  279 (305)
                      +++|| ++|++|++ ++|||||||+ |+||+||++++.+ .+  ++++|.++|+++|++|++.|   |+|+||+|+++++
T Consensus       152 ~~~la-~l~v~~~~-~~~V~G~Hg~-t~vp~~s~~~v~g-~~--~~~~~~~~v~~~g~eii~~k---G~t~~~~a~a~~~  222 (294)
T 1oju_A          152 KERLY-NAGARNIR-RAWIIGEHGD-SMFVAKSLADFDG-EV--DWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHH-HTTCBSCC-CCCEEBCSST-TCEECGGGCCCBS-CC--CHHHHHHHHHTTHHHHHHHH---SSCCHHHHHHHHH
T ss_pred             HHHHH-HhCCCccC-ceEEEecCCC-ceeeecccceECC-cC--hHHHHHHHHHHHHHHHHHhc---CCcchHHHHHHHH
Confidence            99999 99999999 9999999999 9999999999854 22  68899999999999999965   7999999999999


Q ss_pred             HHHHHHccCCCCCceeEEE-EEee
Q 021932          280 FADACLRGLRGDAGVIECA-YVAS  302 (305)
Q Consensus       280 ~~~ai~~~~~~~~~i~~~a-~v~s  302 (305)
                      ++++|++|.   +.++||| |++.
T Consensus       223 ~~~ail~~~---~~v~~~s~~~~g  243 (294)
T 1oju_A          223 MVKAVVEDT---GEIIPTSMILQG  243 (294)
T ss_dssp             HHHHHHTTC---CCEEEEEEEEES
T ss_pred             HHHHHHcCC---CeEEEEEecccc
Confidence            999999984   5799998 6654

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=3.4e-54  Score=407.77  Aligned_cols=248  Identities=27%  Similarity=0.386  Sum_probs=212.1

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC-ceEEEEecCCCHHHHhCCCCEE
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIV  118 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~t~d~~~al~~aDiV  118 (305)
                      .+.+.+||+||||+|+||+++|+.++..|+..||+|+|+++  ++|.++||+|.... .++..   ++|++++++|||+|
T Consensus         4 ~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~---t~d~~~al~dADvV   80 (343)
T 3fi9_A            4 SYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF---TSDIKEALTDAKYI   80 (343)
T ss_dssp             CCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE---ESCHHHHHTTEEEE
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE---cCCHHHHhCCCCEE
Confidence            45667899999977999999999999999888999999987  68999999998531 24443   35778999999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcE-EEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhH
Q 021932          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV  197 (305)
Q Consensus       119 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~ai-viv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~  197 (305)
                      |+++|.|+++|++|.|++..|++++++++++|+++||+++ ++++|||+|++|+++    ++.+++|++||+|+|.||++
T Consensus        81 vitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~----~k~sg~p~~rv~g~t~LDs~  156 (343)
T 3fi9_A           81 VSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVT----LIYSGLKPSQVTTLAGLDST  156 (343)
T ss_dssp             EECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHH----HHHHTCCGGGEEEECCHHHH
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHH----HHHcCCCcceEEEecCcHHH
Confidence            9999999999999999999999999999999999999996 899999999999875    56679999999999999999


Q ss_pred             HHHHHHHHHhCCCCccee-EEEEcccCCcceeeccccCCCCC----------CCChhHHHHHHHHHHhchhhhhccccCC
Q 021932          198 RANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGA  266 (305)
Q Consensus       198 R~~~~la~~l~v~~~~V~-~~vlG~hg~~t~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~gk  266 (305)
                      ||+++||+++|++|++|+ +|||||||+ +++|+||++++.+          .+++++|++|.++|+++|++|++.| | 
T Consensus       157 R~~~~la~~l~v~~~~v~~~~ViGeHgd-s~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g-  233 (343)
T 3fi9_A          157 RLQSELAKHFGIKQSLVTNTRTYGGHGE-QMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR-G-  233 (343)
T ss_dssp             HHHHHHHHHHTSCGGGEECCCEEESSGG-GEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHH-S-
T ss_pred             HHHHHHHHHhCcCHHHcccceEEEcCCC-ceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHcc-C-
Confidence            999999999999999997 899999999 9999999999854          1467789999999999999999976 2 


Q ss_pred             CCchhHHHHHHHHHHHHHHccCCCCCceeE-EEEEee
Q 021932          267 GSATLSMAYAAAKFADACLRGLRGDAGVIE-CAYVAS  302 (305)
Q Consensus       267 g~t~~s~A~a~~~~~~ai~~~~~~~~~i~~-~a~v~s  302 (305)
                      .++++|+|+++++++++|++|++   .++| |+|++.
T Consensus       234 ~ss~~s~A~a~~~~~~ail~d~~---~v~~~s~~~~g  267 (343)
T 3fi9_A          234 RSSFQSPSYVSIEMIRAAMGGEA---FRWPAGCYVNV  267 (343)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSSC---CCSCEEEEEEE
T ss_pred             CCcHHhHHHHHHHHHHHHHhCCC---ceEEEEEEEeC
Confidence            34567999999999999999975   4555 456654

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=6.7e-54  Score=403.10  Aligned_cols=243  Identities=32%  Similarity=0.527  Sum_probs=213.3

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC----CceEEEEecCCCHHHHhCCC
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~~al~~a  115 (305)
                      +.++++||+|||| |.||+++++.|+..++. ||+|+|+++  ++|.++||.|...    ..++..   ++|+ ++++||
T Consensus         3 ~~m~~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~---t~d~-~a~~~a   76 (324)
T 3gvi_A            3 GSMARNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG---ANDY-AAIEGA   76 (324)
T ss_dssp             ---CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESSG-GGGTTC
T ss_pred             CCCcCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE---eCCH-HHHCCC
Confidence            4456679999999 99999999999999986 999999988  5788999999742    234443   3576 899999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-eh
Q 021932          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-ML  194 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t-~L  194 (305)
                      |+||+++|.|+++|++|.|++.+|++++++++++|++++|+++++++|||+|++|+++    ++.+++|++||||+| .|
T Consensus        77 DiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~----~k~sg~p~~rviG~~~~L  152 (324)
T 3gvi_A           77 DVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWAL----QKFSGLPAHKVVGMAGVL  152 (324)
T ss_dssp             SEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHH
T ss_pred             CEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHH----HHhcCCCHHHEEeecCcc
Confidence            9999999999999999999999999999999999999999999999999999999865    667899999999997 79


Q ss_pred             hhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----------CCChhHHHHHHHHHHhchhhhhcccc
Q 021932          195 DVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKT  264 (305)
Q Consensus       195 ds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~  264 (305)
                      |++|++++||+++|++|++|+++||||||+ ++||+||++++.+          .+++++++++.++++++|++|+++| 
T Consensus       153 D~~R~~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-  230 (324)
T 3gvi_A          153 DSARFRYFLSEEFNVSVEDVTVFVLGGHGD-SMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-  230 (324)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhCcCHHHCeEEEEcCCCC-ceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhc-
Confidence            999999999999999999999999999999 9999999999854          1366778999999999999999987 


Q ss_pred             CCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          265 GAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       265 gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      |||+++||+|+++++++++|++|+   +.++|||.
T Consensus       231 gkgsa~~~~a~a~~~~~~ail~~~---~~v~~~s~  262 (324)
T 3gvi_A          231 KTGSAFYAPAASAIQMAESYLKDK---KRVLPVAA  262 (324)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHTTC---CEEEEEEE
T ss_pred             CCCcHHHHHHHHHHHHHHHHHcCC---CcEEEEEE
Confidence            789999999999999999999986   47999983

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=2.1e-53  Score=399.48  Aligned_cols=240  Identities=34%  Similarity=0.565  Sum_probs=217.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC----CceEEEEecCCCHHHHhCCCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      .+||+|||+ |.||+++++.|+..++. +|+|+|+++  ++|.++||+|...    ...+..   ++|+ ++++|||+||
T Consensus         5 ~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~---t~d~-~a~~~aDvVI   78 (321)
T 3p7m_A            5 RKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG---TNDY-KDLENSDVVI   78 (321)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE---cCCH-HHHCCCCEEE
Confidence            469999998 99999999999999987 999999988  5788999999742    234443   3465 8999999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-ehhhHH
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVR  198 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t-~Lds~R  198 (305)
                      +++|.|+++|++|.|++.+|++++++++++|+++||+++++++|||+|++|+++    ++.+++|++||||+| .||++|
T Consensus        79 i~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~----~k~sg~p~~rviG~~~~LD~~R  154 (321)
T 3p7m_A           79 VTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNML----QKFSGVPDNKIVGMAGVLDSAR  154 (321)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEEECHHHHHHH
T ss_pred             EcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH----HHhcCCCHHHEEeeccchHHHH
Confidence            999999999999999999999999999999999999999999999999998764    677899999999997 899999


Q ss_pred             HHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----------CCChhHHHHHHHHHHhchhhhhccccCCCC
Q 021932          199 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (305)
Q Consensus       199 ~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~  268 (305)
                      ++++||+++|++|++|++|||||||+ +++|+||++++.+          .+++++++++.++++++|++|+++| |||+
T Consensus       155 ~~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g~gs  232 (321)
T 3p7m_A          155 FRTFLADELNVSVQQVQAYVMGGHGD-TMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGS  232 (321)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEECSGG-GEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSSC
T ss_pred             HHHHHHHHhCcCHHHceEeeecCcCC-ceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhc-CCCC
Confidence            99999999999999999999999999 9999999999864          1367778999999999999999987 7899


Q ss_pred             chhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          269 ATLSMAYAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       269 t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                      ++||+|+++++++++|++|+   +.++|||..
T Consensus       233 a~~~~a~a~~~~~~ail~~~---~~v~~~s~~  261 (321)
T 3p7m_A          233 AYYAPAAAGIQMAESFLKDK---KMILPCAAK  261 (321)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC---CEEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHcCC---CcEEEEEEE
Confidence            99999999999999999985   479999853

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=1.3e-52  Score=394.99  Aligned_cols=258  Identities=90%  Similarity=1.366  Sum_probs=230.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .++|||+||||+|+||++++..|+..+++.||+|+|+++..+.++||.|......+..+.+++|++++++|||+||+++|
T Consensus         6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag   85 (326)
T 1smk_A            6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG   85 (326)
T ss_dssp             --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence            35679999996699999999999998877899999997767788999986533356554345578899999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHH
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFV  203 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~l  203 (305)
                      .|+++|++|.|++..|+++++++++++.+++|+++++++|||+|++|+++++++++.++||++||||+|.||+.|++++|
T Consensus        86 ~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~rviG~~~Ld~~r~~~~l  165 (326)
T 1smk_A           86 VPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFV  165 (326)
T ss_dssp             CCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCCcccEEEEeehHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCcceeEEEEccc-CCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHHHHHH
Q 021932          204 AEVLGLDPREVDVPVVGGH-AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFAD  282 (305)
Q Consensus       204 a~~l~v~~~~V~~~vlG~h-g~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~  282 (305)
                      |+++|++|++|+++||||| |+ +++|+||++++...+++++++++.++++++|++|++.|.|+|+++||+|.+++++++
T Consensus       166 a~~l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~v~~~~~~~~~~~~~~~v~~~g~eii~~k~~~gs~~~~~a~a~~~~~~  244 (326)
T 1smk_A          166 AEVLGLDPRDVDVPVVGGHAGV-TILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFAD  244 (326)
T ss_dssp             HHHHTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHH
T ss_pred             HHHhCcChhheEEEEecccCCc-eEEEecccCeecCcCCHHHHHHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999 77 999999999986668888899999999999999999876789999999999999999


Q ss_pred             HHHccCCCCCceeEEEEEee
Q 021932          283 ACLRGLRGDAGVIECAYVAS  302 (305)
Q Consensus       283 ai~~~~~~~~~i~~~a~v~s  302 (305)
                      +|+....+++.+++|+|++.
T Consensus       245 ai~~~~~~~~~v~~~~~~~g  264 (326)
T 1smk_A          245 ACLRGLRGDAGVIECAFVSS  264 (326)
T ss_dssp             HHHHHHHTCSCEEEEEEEEC
T ss_pred             HHHHHhCCCCeEEEEEeecc
Confidence            99433333558999997654

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=1.1e-52  Score=397.30  Aligned_cols=252  Identities=28%  Similarity=0.362  Sum_probs=209.8

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----CchhhhhhhcccCCceEEEEecCCCHHHHh
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDAL  112 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~-----el~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~~al  112 (305)
                      .+..+.||+|+||+|+||++++++|++.+++.     ||+|||+++    ++|.++||+|+.......... ++|.++++
T Consensus        20 ~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~-~~~~~~a~   98 (345)
T 4h7p_A           20 GSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVV-TADPRVAF   98 (345)
T ss_dssp             --CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEE-ESCHHHHT
T ss_pred             CCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEE-cCChHHHh
Confidence            55566799999999999999999999988764     999999976    478899999987443333333 34667999


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      +|||+||+++|.||||||+|+|++..|++|++++++.|.+++ |+++|+++|||+|++||++.   ++.+|+|+.|+||.
T Consensus        99 ~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~---~~~~g~~~~r~i~~  175 (345)
T 4h7p_A           99 DGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILL---KSAQGKLNPRHVTA  175 (345)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHH---HHTTTCSCGGGEEE
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHH---HHccCCCCcceeee
Confidence            999999999999999999999999999999999999999997 88999999999999998753   45667777666655


Q ss_pred             -eehhhHHHHHHHHHHhCCCCccee-EEEEcccCCcceeeccccCCCCC-----CCChhHH-HHHHHHHHhchhhhhccc
Q 021932          192 -TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-----SLTPTEI-DYLTDRIQNGGTEVVEAK  263 (305)
Q Consensus       192 -t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~hg~~t~vp~~S~~~v~~-----~~~~~~~-~~i~~~v~~~g~~i~~~k  263 (305)
                       |.||++|++++||+++|++|++|+ .+||||||+ ++||+||++++.+     .++++.+ +++.++++++|++|+++|
T Consensus       176 ~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~-t~vp~~s~a~v~g~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~k  254 (345)
T 4h7p_A          176 MTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS-TQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRGAEIIQLR  254 (345)
T ss_dssp             CCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST-TCEEECTTCEETTEEGGGGCCC------HHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHCcChhheecceeecCCCC-eEEeeeccceECCccHHHhcchhhHHHHHHHHHHhhhhhhhhcC
Confidence             899999999999999999999997 578999999 9999999999865     1333333 579999999999999987


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEEee
Q 021932          264 TGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS  302 (305)
Q Consensus       264 ~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~s  302 (305)
                        ++++.|++|+++++++++|++|.+..  ...|++|.|
T Consensus       255 --g~ss~~s~a~a~~~~~~~~l~~~~~~--~~vs~~v~s  289 (345)
T 4h7p_A          255 --GLSSAMSAAKAAVDHVHDWIHGTPEG--VYVSMGVYS  289 (345)
T ss_dssp             --SSCCCHHHHHHHHHHHHHHHHCCCTT--CCEEEEEEC
T ss_pred             --CCcchhhHHHHHHHHHHHHhcCCCCc--eEEEEEEEe
Confidence              46789999999999999999998632  233445554

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=4.7e-53  Score=397.31  Aligned_cols=229  Identities=22%  Similarity=0.293  Sum_probs=207.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC---ceEEEEecCCCHHHHhCCCCEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN---AVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~---~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      +.+||+|||+ |.||+++++.++..++++||+|+|+++  ++|.++||+|...+   .++..   ++|+ ++++|||+||
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~---t~d~-~~~~daDiVI   94 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVS---GKDY-SVSAGSKLVV   94 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEE---ESSS-CSCSSCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEE---cCCH-HHhCCCCEEE
Confidence            4579999999 999999999999999999999999987  68999999997432   23332   4577 5699999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHH
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVR  198 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R  198 (305)
                      +++|.|+++||+|+|++.+|+++++++++++++++|+++++++|||+|++|+++    ++.++||++||||+ |.||++|
T Consensus        95 itaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi~t~~~----~k~sg~p~~rViG~gt~LDs~R  170 (330)
T 3ldh_A           95 ITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTDKNKQD----WKLSGLPMHRIIGSGCNLDSAR  170 (330)
T ss_dssp             ECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEECCTTHHHHHH
T ss_pred             EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHHHHHHH----HHHhCCCHHHeecccCchhHHH
Confidence            999999999999999999999999999999999999999999999999998765    56779999999999 6899999


Q ss_pred             HHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCCCChhHH-HHHHHHHHhchhhhhccccCCCCchhHHHH--
Q 021932          199 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEI-DYLTDRIQNGGTEVVEAKTGAGSATLSMAY--  275 (305)
Q Consensus       199 ~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~-~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~--  275 (305)
                      +++++|+++|++|++|++|||||||+ |++|+||+          +| +++.++|+++|++|++.   ||+|+||+|+  
T Consensus       171 ~~~~lA~~lgv~~~~V~~~V~G~Hg~-t~vp~~S~----------~~~~~~~~~v~~~g~eii~~---kg~t~~a~a~~~  236 (330)
T 3ldh_A          171 FRYLMGERLGVHSCLVIGWVIGQHGD-SVPSVWSG----------MWDAKLHKDVVDSAYEVIKL---KGYTSWAIGLVV  236 (330)
T ss_dssp             HHHHHHHHHTSCTTTCCEEECSSSST-TCCEEEEE----------EEETTEEHHHHHCCCTTSTT---CHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCHHHeEEEEEcCCCC-ceeeechh----------hHHHHHHHHHHHHHHHHHHc---cCCcceeeeeec
Confidence            99999999999999999999999999 99999998          33 68899999999999995   5899999999  


Q ss_pred             ---------------HHHHHHHHHHccCCCCCceeEEEE
Q 021932          276 ---------------AAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       276 ---------------a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                                     ++++++++|++|+   +.++|||.
T Consensus       237 ~~~~~~~~~~~~~~~a~~~~~~ail~~~---~~v~~~s~  272 (330)
T 3ldh_A          237 SNPVDVLTYVAWKGCSVADLAQTIMKDL---CRVHPVST  272 (330)
T ss_dssp             HHHHTTSSSCSCTHHHHHHHHHHHHHTC---CEEECCBC
T ss_pred             cCccchhhhhhhHHHHHHHHHHHHHcCC---CceEEEEe
Confidence                           9999999999985   47999983

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=6e-51  Score=388.24  Aligned_cols=243  Identities=21%  Similarity=0.220  Sum_probs=201.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcE---EEEEeCCC------CchhhhhhhcccC-C-ceEEEEecCCCHHHHhC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSV---LHLYDVVN------TPGVTADISHMDT-N-AVVRGFLGQQQLEDALT  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~e---l~L~D~~~------~~g~~~DL~~~~~-~-~~v~~~~~t~d~~~al~  113 (305)
                      +++||+||||+|+||+++++.|+.+++++|   |+|+|.+.      ++|++|||+|+.. + ..++..  + +.+++++
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~--~-~~y~~~~  107 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG--I-DPYEVFE  107 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE--S-CHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEe--c-CCHHHhC
Confidence            457999999779999999999999999877   77766543      5899999999863 2 234432  3 3458999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-
Q 021932          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-  191 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-  191 (305)
                      |||+||+++|.||+|||+|+|++..|++|++++++.|.++ +|+++++++|||+|+|||++    ++.++++++|+||. 
T Consensus       108 daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia----~k~sg~~~~rvig~g  183 (375)
T 7mdh_A          108 DVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC----LKNAPDIPAKNFHAL  183 (375)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH----HHHcCCCCccEEEee
Confidence            9999999999999999999999999999999999999998 79999999999999999875    66667777788888 


Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeE-EEEcccCCcceeeccccCCCCC----C-CChhHH--HHHHHHHHhchhhhhccc
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPSC----S-LTPTEI--DYLTDRIQNGGTEVVEAK  263 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~-~vlG~hg~~t~vp~~S~~~v~~----~-~~~~~~--~~i~~~v~~~g~~i~~~k  263 (305)
                      |.||++||+++||+++|++|++|+. |||||||+ |+||+||++++.+    . +.+++|  ++|.++|+++|++|+++|
T Consensus       184 T~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgd-t~vp~~S~a~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~k  262 (375)
T 7mdh_A          184 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW  262 (375)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             ehHHHHHHHHHHHHHhCcChhhcccceEEecCCC-ceeeeeecccCCCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999985 99999998 9999999999865    1 334445  689999999999999975


Q ss_pred             cCCCCchhH-HHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          264 TGAGSATLS-MAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       264 ~gkg~t~~s-~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                         |+++|+ .|.++++.+.+|++|. .++.++|||.
T Consensus       263 ---G~ts~a~aa~~i~~~i~~~l~g~-d~~~v~~vs~  295 (375)
T 7mdh_A          263 ---GRSSAASTAVSIADAIKSLVTPT-PEGDWFSTGV  295 (375)
T ss_dssp             ---SSCCHHHHHHHHHHHHHHHHSCC-CTTCCEEEEE
T ss_pred             ---CCCchHHHHHHHHHHHHHHhcCC-CCCeEEEEEE
Confidence               556663 4444555555555543 2567999984

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=3.3e-51  Score=386.21  Aligned_cols=248  Identities=24%  Similarity=0.347  Sum_probs=210.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcE-----EEEEeCCC----CchhhhhhhcccCCceEEEEecCCCHHHHhCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~e-----l~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~a  115 (305)
                      +++||+|+||+|+||+++++.|+.+++++|     |+|+|+++    ++|.++||+|+.. +.+..+..+++.+++++||
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~-~~~~~~~~~~~~~~~~~da   80 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL-PLLKDVIATDKEEIAFKDL   80 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC-TTEEEEEEESCHHHHTTTC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhh-cccCCEEEcCCcHHHhCCC
Confidence            457999999779999999999999998888     99999974    5899999999752 2223222234567999999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCc-EEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-ee
Q 021932          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA-IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM  193 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a-iviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~  193 (305)
                      |+||++||.|+++||+|.|++..|+++++++++++++++|++ +++++|||+|++||++    ++.++++|+++||. |.
T Consensus        81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~----~~~~~~~p~~~ig~~t~  156 (333)
T 5mdh_A           81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA----SKSAPSIPKENFSCLTR  156 (333)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEECCH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHH----HHHcCCCCcCEEEEEEh
Confidence            999999999999999999999999999999999999999998 6999999999999875    56665444455765 99


Q ss_pred             hhhHHHHHHHHHHhCCCCcceeEE-EEcccCCcceeeccccCCC--CC-CC------ChhHH--HHHHHHHHhchhhhhc
Q 021932          194 LDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVKP--SC-SL------TPTEI--DYLTDRIQNGGTEVVE  261 (305)
Q Consensus       194 Lds~R~~~~la~~l~v~~~~V~~~-vlG~hg~~t~vp~~S~~~v--~~-~~------~~~~~--~~i~~~v~~~g~~i~~  261 (305)
                      ||++||+++||+++|++|++|+++ ||||||+ |+||+||++++  .+ ++      .+++|  +++.++++++|++|++
T Consensus       157 LDs~R~~~~la~~l~v~~~~v~~~vV~GeHgd-s~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~  235 (333)
T 5mdh_A          157 LDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK  235 (333)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHeeecEEEEcCCC-CEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987 5999999 99999999975  33 22      23334  5899999999999999


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEEe
Q 021932          262 AKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVA  301 (305)
Q Consensus       262 ~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~  301 (305)
                      +|  ++++.|++|.++++++++|++|.+ ++.++|||..-
T Consensus       236 ~k--~~ssa~~~a~~~~~~~~~il~~~~-~~~v~~~s~~~  272 (333)
T 5mdh_A          236 AR--KLSSAMSAAKAICDHVRDIWFGTP-EGEFVSMGIIS  272 (333)
T ss_dssp             HH--SSCCCHHHHHHHHHHHHHHHHCCC-TTCCEEEEEEC
T ss_pred             cc--CchHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEec
Confidence            76  467899999999999999999975 44599998753

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=9.3e-51  Score=382.32  Aligned_cols=239  Identities=25%  Similarity=0.392  Sum_probs=208.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-CceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      +.+||+|||| |+||+++++.|+..++++||+|+|+++  +++.++||.|... ...++...  .+ +++++|||+||++
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii~   83 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS--AE-YSDAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGGGCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEEc
Confidence            4579999999 999999999999999999999999987  6788999999752 23444332  34 5889999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHH
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~  200 (305)
                      +|.|+++|++|.|++.+|+++++++++.|+++||+++++++|||+|++|+++    ++.+++|++||||+ |.||++|++
T Consensus        84 ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~s~~p~~rviG~gt~LD~~R~~  159 (326)
T 2zqz_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYAT----WKLSGFPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH----HHHcCCCHHHEEEccccchHHHHH
Confidence            9999999999999999999999999999999999999999999999998754    67779999999999 999999999


Q ss_pred             HHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-----------CCChhHHHHHHHHHHhchhhhhccccCCCCc
Q 021932          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (305)
Q Consensus       201 ~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t  269 (305)
                      +++|+++|++|++|+++||||||+ +++|+||++++.+           .++++.++++.++++++|++|++.   ||++
T Consensus       160 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~~---kG~t  235 (326)
T 2zqz_A          160 QSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKL---KGAT  235 (326)
T ss_dssp             HHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHHH---HSCC
T ss_pred             HHHHHHhCCChhheEEEEecccCC-ceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHHc---CCCc
Confidence            999999999999999999999999 9999999998753           145566789999999999999994   5889


Q ss_pred             hhHHHHHHHHHHHHHHccCCCCCceeEEE
Q 021932          270 TLSMAYAAAKFADACLRGLRGDAGVIECA  298 (305)
Q Consensus       270 ~~s~A~a~~~~~~ai~~~~~~~~~i~~~a  298 (305)
                      +|++|.++++++++|++|.+   .+++|+
T Consensus       236 ~~~~a~aa~~~~~ai~~~~~---~~~~vs  261 (326)
T 2zqz_A          236 FYGIATALARISKAILNDEN---AVLPLS  261 (326)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC---EEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCC---cEEEEE
Confidence            99999999999999999954   577765

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=7.5e-51  Score=381.79  Aligned_cols=239  Identities=24%  Similarity=0.387  Sum_probs=203.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-CceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      .+||+|||| |+||+++++.|+..++++||+|+|+++  ++|.++||.|... ...++...  .+ +++++|||+||+++
T Consensus         5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVii~a   80 (318)
T 1ez4_A            5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS--GE-YSDCKDADLVVITA   80 (318)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE--CC-GGGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEECC
Confidence            369999999 999999999999999999999999987  6888999999752 23444332  34 58899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHH
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT  201 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~  201 (305)
                      |.|+++|++|.|++.+|+++++++++.|++++|+++++++|||+|++|+++    ++.+++|++||||+ |.||++|+++
T Consensus        81 g~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~s~~p~~rviG~gt~LD~~R~~~  156 (318)
T 1ez4_A           81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYAT----WKFSGFPKERVIGSGTSLDSSRLRV  156 (318)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH----HHHcCCCHHHEEeccccchHHHHHH
Confidence            999999999999999999999999999999999999999999999998754    67779999999999 9999999999


Q ss_pred             HHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----------CCChhHHHHHHHHHHhchhhhhccccCCCCchh
Q 021932          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATL  271 (305)
Q Consensus       202 ~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~  271 (305)
                      ++|+++|++|++|+++||||||+ +++|+||++++.+          .++++.++++.++++++|++|++.   ||+++|
T Consensus       157 ~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~t~~  232 (318)
T 1ez4_A          157 ALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINL---KGATFY  232 (318)
T ss_dssp             HHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH---HSCCCH
T ss_pred             HHHHHhCcChhHEEEEEecccCC-ceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhheeC---CCcchH
Confidence            99999999999999999999999 9999999998753          155667899999999999999994   588999


Q ss_pred             HHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          272 SMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       272 s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      ++|.++++++++|++|.+   .+++|+.
T Consensus       233 ~~a~a~~~~~~ai~~~~~---~~~~vs~  257 (318)
T 1ez4_A          233 GIGTALMRISKAILRDEN---AVLPVGA  257 (318)
T ss_dssp             HHHHHHHHHHHHHHTTCC---EEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCC---cEEEEEE
Confidence            999999999999999954   5777653

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=1.6e-50  Score=378.25  Aligned_cols=238  Identities=24%  Similarity=0.397  Sum_probs=212.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-CceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      |||+|||| |+||+++++.|+..++++||+|+|+++  +++.++||.|... ...++...  ++ +++++|||+||+++|
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~--~~-~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA--GS-YGDLEGARAVVLAAG   76 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTEEEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE--CC-HHHhCCCCEEEECCC
Confidence            59999999 999999999999999999999999987  6788999999752 12334332  35 488999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHHH
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~~  202 (305)
                      .|+++|++|.|++.+|++++++++++|++++|+++++++|||+|++|+++    ++.+++|++||||+ |+||++|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~s~~p~~rviG~gt~LD~~R~~~~  152 (310)
T 2xxj_A           77 VAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVA----YALSGLPPGRVVGSGTILDTARFRAL  152 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCGGGEEECTTHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH----HHHcCCCHHHEEecCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999998765    66779999999999 99999999999


Q ss_pred             HHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCC------------CChhHHHHHHHHHHhchhhhhccccCCCCch
Q 021932          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS------------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (305)
Q Consensus       203 la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~------------~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~  270 (305)
                      +|+++|++|++|++|||||||+ +++|+||++++.+.            ++++.++++.++++++|++|++.   ||+++
T Consensus       153 la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~t~  228 (310)
T 2xxj_A          153 LAEYLRVAPQSVHAYVLGEHGD-SEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEG---KGATY  228 (310)
T ss_dssp             HHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHH---HSCCC
T ss_pred             HHHHhCcCHHHeEEEEecccCC-ccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhc---cCCcH
Confidence            9999999999999999999999 99999999987531            35667899999999999999995   58899


Q ss_pred             hHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          271 LSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       271 ~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      |++|.++++++++|++|.   +.+++|+.
T Consensus       229 ~~~a~a~~~~~~ai~~~~---~~~~~vs~  254 (310)
T 2xxj_A          229 YGIGAGLARLVRAILTDE---KGVYTVSA  254 (310)
T ss_dssp             HHHHHHHHHHHHHHHTTC---CEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCC---CCEEEEEE
Confidence            999999999999999995   46777653

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=3.1e-50  Score=376.07  Aligned_cols=234  Identities=26%  Similarity=0.441  Sum_probs=212.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC----CceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      ||+|||| |+||+++++.++..++ +||+|+|+++  ++|.++||.|...    ..++..   ++|+ ++++|||+||++
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~~   74 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG---SNSY-EDMRGSDIVLVT   74 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEEEC
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEE---CCCH-HHhCCCCEEEEe
Confidence            7999999 9999999999998898 8999999987  6888999999631    233443   3576 899999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHH
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~  200 (305)
                      +|.|+++|++|.|++.+|++++++++++|++++|+++++++|||+|++|+++    ++.+++|++||||+ |.||++|++
T Consensus        75 ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~~~~p~~rviG~gt~LD~~R~~  150 (308)
T 2d4a_B           75 AGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYVM----YKKTGFPRERVIGFSGILDSARMA  150 (308)
T ss_dssp             CSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCChhhEEEecccchHHHHH
Confidence            9999999999999999999999999999999999999999999999998764    66789999999999 999999999


Q ss_pred             HHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C----CChhHHHHHHHHHHhchhhhhccccCCC-CchhHHH
Q 021932          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAG-SATLSMA  274 (305)
Q Consensus       201 ~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~g~~i~~~k~gkg-~t~~s~A  274 (305)
                      +++|+++|++|++|+++||||||+ +++|+||++++.+ +    +++++++++.++++++|++|++.   || ++.|++|
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~s~~~~~a  226 (308)
T 2d4a_B          151 YYISQKLGVSFKSVNAIVLGMHGQ-KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITEL---RGYSSNYGPA  226 (308)
T ss_dssp             HHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHH---HSSCCCHHHH
T ss_pred             HHHHHHhCcChhHeEEEEEeccCC-ceeeeehhccCCCEEHHHHcCHHHHHHHHHHHHHhhHhhhhC---CCCccHHHHH
Confidence            999999999999999999999998 9999999998864 1    57778999999999999999995   47 8999999


Q ss_pred             HHHHHHHHHHHccCCCCCceeEEE
Q 021932          275 YAAAKFADACLRGLRGDAGVIECA  298 (305)
Q Consensus       275 ~a~~~~~~ai~~~~~~~~~i~~~a  298 (305)
                      .++++++++|++|+   +.+++|+
T Consensus       227 ~a~~~~~~ai~~~~---~~v~~vs  247 (308)
T 2d4a_B          227 AGLVLTVEAIKRDS---KRIYPYS  247 (308)
T ss_dssp             HHHHHHHHHHHTTC---CEEEEEE
T ss_pred             HHHHHHHHHHHhCC---CcEEEEE
Confidence            99999999999986   4788875

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=1e-49  Score=373.92  Aligned_cols=240  Identities=25%  Similarity=0.386  Sum_probs=212.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC--ceEEEEecCCCHHHHhCCCCEEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      +++||+|||| |+||+++++.|+..++++||+|+|+++  +++.++||.|....  ..++...  ++ +++++|||+||+
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~--~~-~~a~~~aDvVvi   80 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA--GE-YSDCHDADLVVI   80 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE--CC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe--CC-HHHhCCCCEEEE
Confidence            4579999999 999999999999999889999999987  67888999986421  3344332  34 588999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHH
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~  199 (305)
                      ++|.|+++|++|.|++.+|++++++++++|++++|+++++++|||+|++|+++    ++.+++|++||||+ |.||++|+
T Consensus        81 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~----~k~~~~p~~rviG~gt~lD~~r~  156 (317)
T 3d0o_A           81 CAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYAT----WKFSGLPKERVIGSGTILDSARF  156 (317)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHH----HHHhCCCHHHEEecCccccHHHH
Confidence            99999999999999999999999999999999999999999999999998754    67779999999999 99999999


Q ss_pred             HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCC----------CChhHHHHHHHHHHhchhhhhccccCCCCc
Q 021932          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS----------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSA  269 (305)
Q Consensus       200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~----------~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t  269 (305)
                      ++++|+++|++|++|+++||||||+ +++|+||++++.+.          ++++.++++.++++++|++|++.   ||++
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~~  232 (317)
T 3d0o_A          157 RLLLSEAFDVAPRSVDAQIIGEHGD-TELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQA---KGAT  232 (317)
T ss_dssp             HHHHHHHHTSCGGGCBCCEEBCSST-TCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHHH---HSCC
T ss_pred             HHHHHHHhCcChhhEEEEEEecCCC-CeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEeC---CCCc
Confidence            9999999999999999999999999 99999999987541          34556789999999999999994   5889


Q ss_pred             hhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          270 TLSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       270 ~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      +|++|.++++++++|++|.   +.+++|+.
T Consensus       233 ~~~~a~a~~~~~~ai~~~~---~~~~~~~~  259 (317)
T 3d0o_A          233 YYGVAMGLARITEAIFRNE---DAVLTVSA  259 (317)
T ss_dssp             CHHHHHHHHHHHHHHHTTC---CEEEEEEE
T ss_pred             hHhHHHHHHHHHHHHHcCC---CcEEEEEE
Confidence            9999999999999999995   46777653

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=8.1e-50  Score=374.76  Aligned_cols=239  Identities=25%  Similarity=0.390  Sum_probs=203.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-CceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      +++||+|||+ |+||+++++.|+..++++||+|+|+++  ++|.++||.|... ...++...  ++ +++++|||+||++
T Consensus         6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii~   81 (318)
T 1y6j_A            6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVIVVT   81 (318)
T ss_dssp             -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE--CC-HHHhCCCCEEEEc
Confidence            4579999999 999999999999999999999999987  6889999999752 23454432  35 4889999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHH
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~  200 (305)
                      +|.|+++|++|.|++.+|+++++++++.|++++|+++++++|||+|++|+++    ++.+++|++||||+ |.||++|++
T Consensus        82 ~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~----~k~s~~p~~rviG~gt~Ld~~r~~  157 (318)
T 1y6j_A           82 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI----QKWSGLPVGKVIGSGTVLDSIRFR  157 (318)
T ss_dssp             CCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH----HHHHTCCTTTEEECTTHHHHHHHH
T ss_pred             CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHH----HHHcCCCHHHEeccCCchHHHHHH
Confidence            9999999999999999999999999999999999999999999999998765    66779999999999 999999999


Q ss_pred             HHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----CC--------ChhHHHHHHHHHHhchhhhhccccCCCC
Q 021932          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----SL--------TPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (305)
Q Consensus       201 ~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----~~--------~~~~~~~i~~~v~~~g~~i~~~k~gkg~  268 (305)
                      +++|+++|++|++|++|||||||+ +++|+||++++.+    .+        ++++++++.++++++|++|++.   ||+
T Consensus       158 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~  233 (318)
T 1y6j_A          158 YLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKN---KGA  233 (318)
T ss_dssp             HHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHHH---TSC
T ss_pred             HHHHHHhCCCHHHeEEEEecccCC-cEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhhC---CCc
Confidence            999999999999999999999999 9999999998743    11        2344689999999999999994   588


Q ss_pred             chhHHHHHHHHHHHHHHccCCCCCceeEEE
Q 021932          269 ATLSMAYAAAKFADACLRGLRGDAGVIECA  298 (305)
Q Consensus       269 t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a  298 (305)
                      ++|++|.++++++++|++|.+   .+++|+
T Consensus       234 t~~~~a~a~~~~~~ai~~~~~---~~~~~~  260 (318)
T 1y6j_A          234 TYYGIAVSINTIVETLLKNQN---TIRTVG  260 (318)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCC---CEECCE
T ss_pred             cHHHHHHHHHHHHHHHHcCCC---cEEEEE
Confidence            999999999999999999954   566654

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=6.5e-49  Score=366.22  Aligned_cols=238  Identities=25%  Similarity=0.355  Sum_probs=212.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC--CC--CchhhhhhhcccC-CceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~--~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      |||+||||+|+||+++++.|+..++..|++|+|+  ++  +++.++||.|... ...++...  ++ +++++|||+||++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVi~~   77 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GG-YEDTAGSDVVVIT   77 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe--CC-HHHhCCCCEEEEc
Confidence            5999999779999999999999998889999999  65  5677899998742 22344332  24 5889999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHH
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRAN  200 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~  200 (305)
                      +|.++++|++|.|++..|+++++++++++++++|+++++++|||+|++|+++    ++.+++|++||||+ |.||++|++
T Consensus        78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~----~~~~~~p~~rviG~gt~Ld~~r~~  153 (303)
T 1o6z_A           78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHL----YEAGDRSREQVIGFGGRLDSARFR  153 (303)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHH----HHHSSSCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH----HHHcCCCHHHeeecccchhHHHHH
Confidence            9999999999999999999999999999999999999999999999998654    77889999999999 999999999


Q ss_pred             HHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC--CC-ChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHH
Q 021932          201 TFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC--SL-TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAA  277 (305)
Q Consensus       201 ~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~--~~-~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~  277 (305)
                      +++|+++|++|++|+++||||||+ +++|+||++++.+  .+ ++++++++.++++++|++|++.   ||+++||+|.++
T Consensus       154 ~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~p~~~~~~~~~~~~~~v~~~g~eii~~---kg~~~~~~a~a~  229 (303)
T 1o6z_A          154 YVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIER---KGATEWGPARGV  229 (303)
T ss_dssp             HHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHTT---TSSCCHHHHHHH
T ss_pred             HHHHHHhCcCHHHeEEEEEeCCCC-ccccCCcccccCCcCccCCHHHHHHHHHHHHHHhHHHHhc---CCChHHHHHHHH
Confidence            999999999999999999999999 9999999998632  34 6778999999999999999994   689999999999


Q ss_pred             HHHHHHHHccCCCCCceeEEE
Q 021932          278 AKFADACLRGLRGDAGVIECA  298 (305)
Q Consensus       278 ~~~~~ai~~~~~~~~~i~~~a  298 (305)
                      ++++++|++|++   .+++|+
T Consensus       230 ~~~~~ai~~~~~---~~~~~~  247 (303)
T 1o6z_A          230 AHMVEAILHDTG---EVLPAS  247 (303)
T ss_dssp             HHHHHHHHTTCC---CEEEEE
T ss_pred             HHHHHHHHhCCC---CEEEEE
Confidence            999999999963   677754

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=3e-49  Score=369.42  Aligned_cols=238  Identities=28%  Similarity=0.498  Sum_probs=205.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhhhhhhccc----CCceEEEEecCCCHHHHhCCCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~----~~~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      ++||+|||| |+||+++++.|+..++++ |+|+|+++  +++.++||.|..    ...++..   ++|+ ++++|||+||
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi   75 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNNY-ADTANSDVIV   75 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEE---CCCH-HHHCCCCEEE
Confidence            369999999 999999999999999764 99999987  678889999863    1234443   3577 8999999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHH
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVR  198 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R  198 (305)
                      +++|.|+++|++|.|++.+|+++++++++++++++|+++++++|||+|++|+++    ++.+++|++||||+ |.||++|
T Consensus        76 ~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~~~t~~~----~~~~~~~~~rviG~gt~LD~~r  151 (309)
T 1ur5_A           76 VTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA----AEVSGFPKERVIGQAGVLDAAR  151 (309)
T ss_dssp             ECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHHHHH
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchHHHHHHH----HHHcCCCHHHEEECCcchHHHH
Confidence            999999999999999999999999999999999999999999999999998764    66789999999999 9999999


Q ss_pred             HHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-----CCChhHHHHHHHHHHhchhhhhccccCCCCchhHH
Q 021932          199 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM  273 (305)
Q Consensus       199 ~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-----~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~  273 (305)
                      +++++|+++|++|++|++|||||||+ +++|+||++++.+     .+++++++++.++++++|++|++. .+||++.|++
T Consensus       152 ~~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~-~~kgs~~~~~  229 (309)
T 1ur5_A          152 YRTFIAMEAGVSVEDVQAMLMGGHGD-EMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL-LKTGSAYYAP  229 (309)
T ss_dssp             HHHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHH-HSSCCCCHHH
T ss_pred             HHHHHHHHhCCChhheeEEEecCcCC-ceeeeeecceeCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhh-ccCCCcHHHH
Confidence            99999999999999999999999998 9999999998754     257778999999999999999995 2468999999


Q ss_pred             HHHHHHHHHHHHccCCCCCceeEEE
Q 021932          274 AYAAAKFADACLRGLRGDAGVIECA  298 (305)
Q Consensus       274 A~a~~~~~~ai~~~~~~~~~i~~~a  298 (305)
                      |.++++++++|++|+   +.+++|+
T Consensus       230 a~a~~~~~~ai~~~~---~~~~~~~  251 (309)
T 1ur5_A          230 AAATAQMVEAVLKDK---KRVMPVA  251 (309)
T ss_dssp             HHHHHHHHHHHHTTC---CEEEEEE
T ss_pred             HHHHHHHHHHHHcCC---CcEEEEE
Confidence            999999999999986   4788874

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=1.8e-48  Score=365.27  Aligned_cols=239  Identities=23%  Similarity=0.360  Sum_probs=211.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC--ceEEEEecCCCHHHHhCCCCEEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      +++||+|||+ |.||+++++.|+..++.+||+|+|+++  +++.++|+.|....  ..++...  ++ +++++|||+||+
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~-~~al~~aDvVii   80 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVVI   80 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc--Cc-HHHhCCCCEEEE
Confidence            4579999999 999999999999989889999999987  67788999986421  1444432  34 488999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHH
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~  199 (305)
                      ++|.++++|++|.|++.+|.++++++++++++++|+++++++|||+|++|+++    ++.+++|++||||+ |.||++|+
T Consensus        81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~~~~~~----~~~s~~p~~rviG~gt~lD~~r~  156 (316)
T 1ldn_A           81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT----WKFSGLPHERVIGSGTILDTARF  156 (316)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHTCCGGGEEECTTHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHH----HHHhCCCHHHEEecccchHHHHH
Confidence            99999999999999999999999999999999999999999999999998765    66779999999999 99999999


Q ss_pred             HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----C-------CChhHHHHHHHHHHhchhhhhccccCCCC
Q 021932          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----S-------LTPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (305)
Q Consensus       200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----~-------~~~~~~~~i~~~v~~~g~~i~~~k~gkg~  268 (305)
                      ++++|+++|++|++|++|||||||+ +++|+||++++.+    .       +++++++++.++++++|++|++.   ||+
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~  232 (316)
T 1ldn_A          157 RFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEK---KGA  232 (316)
T ss_dssp             HHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHHH---HSC
T ss_pred             HHHHHHHhCCCHHHeEEEEecccCC-ceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHhc---cCC
Confidence            9999999999999999999999999 9999999998743    1       23455789999999999999995   588


Q ss_pred             chhHHHHHHHHHHHHHHccCCCCCceeEEE
Q 021932          269 ATLSMAYAAAKFADACLRGLRGDAGVIECA  298 (305)
Q Consensus       269 t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a  298 (305)
                      ++|++|.++++++++|++|.   +.+++|+
T Consensus       233 ~~~~~a~a~~~~~~ai~~~~---~~~~~~~  259 (316)
T 1ldn_A          233 TYYGIAMGLARVTRAILHNE---NAILTVS  259 (316)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC---CEEEEEE
T ss_pred             cHHHHHHHHHHHHHHHHhCC---CcEEEEE
Confidence            99999999999999999985   4667765

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=2e-48  Score=363.00  Aligned_cols=229  Identities=19%  Similarity=0.275  Sum_probs=198.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ++||+|||| |+||+++++.++..++++||+|+|+++ +.+.++|+.|.. .++++.   ++|+ ++++|||+||+++|.
T Consensus        14 ~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~-~~~i~~---t~d~-~~l~~aD~Vi~aag~   87 (303)
T 2i6t_A           14 VNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFN-LPNVEI---SKDL-SASAHSKVVIFTVNS   87 (303)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHT-CTTEEE---ESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhc-CCCeEE---eCCH-HHHCCCCEEEEcCCC
Confidence            469999998 999999999999999999999999987 778899999864 346665   3577 889999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHHHH
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFV  203 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~~l  203 (305)
                      + ++||+|.|++.+|++++++++++++++||+++++++|||+|++|+++    ++.+++|++||||+ |.||++|+++++
T Consensus        88 ~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~~----~~~~~~p~~rviG~gt~Ld~~R~~~~l  162 (303)
T 2i6t_A           88 L-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVT----WKLSTFPANRVIGIGCNLDSQRLQYII  162 (303)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHHHHHH
T ss_pred             C-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHHH----HHhcCCCHHHeeCCCCCchHHHHHHHH
Confidence            6 89999999999999999999999999999999999999999997654    67789999999999 999999999999


Q ss_pred             HHHhCCCCcceeEEEEcccCCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCchhHHHHHHHHHHHH
Q 021932          204 AEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA  283 (305)
Q Consensus       204 a~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A~a~~~~~~a  283 (305)
                      |+++|++|++|+++||||||+ +++|+||+...   +   ..+++.++++++|++|++   +||+++||+|.++++++++
T Consensus       163 a~~lgv~~~~v~~~v~G~Hg~-s~~p~~s~~~~---~---~~~~~~~~~~~~g~eii~---~kGst~~~~a~a~~~i~~a  232 (303)
T 2i6t_A          163 TNVLKAQTSGKEVWVIGEQGE-DKVLTWSGQEE---V---VSHTSQVQLSNRAMELLR---VKGQRSWSVGLSVADMVDS  232 (303)
T ss_dssp             HHTSCCTTGGGGEEEEBSCSS-SCEEEEBCSSC---C---CCHHHHHHHHHHHHTTSS---SCCCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCChHHeEEEEecCCCC-Ccccccccccc---c---cHHHHHHHHHHHHHHHHH---ccCchHHhHHHHHHHHHHH
Confidence            999999999999999999998 89999999631   2   225788889999999988   4689999999999999999


Q ss_pred             HHccCCCCCceeEEE
Q 021932          284 CLRGLRGDAGVIECA  298 (305)
Q Consensus       284 i~~~~~~~~~i~~~a  298 (305)
                      |++|++   .+++|+
T Consensus       233 i~~~~~---~~~~vs  244 (303)
T 2i6t_A          233 IVNNKK---KVHSVS  244 (303)
T ss_dssp             HHTTCC---EEEEEE
T ss_pred             HHcCCC---cEEEEE
Confidence            999975   577764

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=1.7e-48  Score=364.90  Aligned_cols=241  Identities=25%  Similarity=0.418  Sum_probs=206.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC--CC--CchhhhhhhcccC-C-ceEEEEecCCCHHHHhCCCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VN--TPGVTADISHMDT-N-AVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~--~~--~~g~~~DL~~~~~-~-~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      |||+||||+|+||+++++.|+..++..|++|+|+  ++  +.+.++||.|... . ..+....++.+++++++|||+||+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            5999999999999999999999998889999999  65  5788999998642 1 233332222125689999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHH
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~  199 (305)
                      +||.++++|++|.+++..|+++++++++.+++++ +++++++|||+|++|+++    ++.+++|++||||+ |.||+.|+
T Consensus        81 ~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~~~----~k~~~~p~~rviG~gt~LD~~r~  155 (313)
T 1hye_A           81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTYKA----LVDSKFERNQVFGLGTHLDSLRF  155 (313)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHHHH----HHHHCCCTTSEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHHHH----HHhhCcChhcEEEeCccHHHHHH
Confidence            9999999999999999999999999999999999 999999999999998765    66689999999999 99999999


Q ss_pred             HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----C---CChhHHHHHHHHHHhchhhhhccccCCCCchhH
Q 021932          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----S---LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS  272 (305)
Q Consensus       200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----~---~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s  272 (305)
                      ++++|+++|+++++|+++||||||+ +++|+||++++.+    .   +++++++++.++++++|++|++   +||++.|+
T Consensus       156 ~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kgs~~~~  231 (313)
T 1hye_A          156 KVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR---LKGGSEFG  231 (313)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---------CC
T ss_pred             HHHHHHHhCcCHHHeEEEEeeccCC-cccceeeccccCCEEHHHHhcCCHHHHHHHHHHHHhccceeec---CCCCcHHH
Confidence            9999999999999999999999998 9999999998754    2   2566689999999999999998   45899999


Q ss_pred             HHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          273 MAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       273 ~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      +|.++++++++|++|++   .+++|+.
T Consensus       232 ~a~a~~~~~~ai~~~~~---~~~~~~~  255 (313)
T 1hye_A          232 PAAAILNVVRCIVNNEK---RLLTLSA  255 (313)
T ss_dssp             HHHHHHHHHHHHHTTCC---EEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCC---eEEEEEE
Confidence            99999999999999863   5666653

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=6.5e-47  Score=356.83  Aligned_cols=244  Identities=32%  Similarity=0.540  Sum_probs=214.2

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhhhhhhccc----CCceEEEEecCCCHHHHhCCC
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~----~~~~v~~~~~t~d~~~al~~a  115 (305)
                      |..+++||+|||| |.+|+++|..|+..+++ +|+|+|+++  +++.++|+.|..    ...+++.   ++|++++++||
T Consensus         5 ~~~~~~kI~VIGa-G~vG~~lA~~la~~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~~ea~~~a   79 (331)
T 1pzg_A            5 LVQRRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGA   79 (331)
T ss_dssp             CCSCCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTC
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE---eCCHHHHhCCC
Confidence            5666789999999 99999999999998885 599999988  566678887753    1234543   46887799999


Q ss_pred             CEEEEcCCCCCCCCC-----chhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 021932          116 DIVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (305)
Q Consensus       116 DiVIi~ag~~~~~g~-----~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG  190 (305)
                      |+||+++|.|+++|+     +|.|++.+|++++++++++|++++|+++++++|||+|++|+++    ++.+++|++||||
T Consensus        80 DiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~----~~~~~~~~~rviG  155 (331)
T 1pzg_A           80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM----CEASGVPTNMICG  155 (331)
T ss_dssp             SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             CEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHH----HHhcCCChhcEEe
Confidence            999999999999999     9999999999999999999999999999999999999997664    5667999999999


Q ss_pred             e-eehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCC----------CChhHHHHHHHHHHhchhhh
Q 021932          191 V-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS----------LTPTEIDYLTDRIQNGGTEV  259 (305)
Q Consensus       191 ~-t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~----------~~~~~~~~i~~~v~~~g~~i  259 (305)
                      + |.||++|++++||+++|++|++|+++|||+||+ +++|+||++++.+.          +++++++++.++++.+|++|
T Consensus       156 ~gt~LD~~R~~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ei  234 (331)
T 1pzg_A          156 MACMLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEI  234 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhCCCHHHceEEEecCCCC-CEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHHH
Confidence            9 689999999999999999999999999999998 99999999987541          45666789999999999999


Q ss_pred             hccccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          260 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       260 ~~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      ++. .+||+++||+|.++++++++|++|.   +.+++|+.
T Consensus       235 i~~-~~kgst~~~~a~a~~~ii~ai~~~~---~~~~~~~v  270 (331)
T 1pzg_A          235 VRF-LGQGSAYYAPAASAVAMATSFLNDE---KRVIPCSV  270 (331)
T ss_dssp             HHH-HSSSCCCHHHHHHHHHHHHHHHTTC---CEEEEEEE
T ss_pred             HHh-hcCCCccchHHHHHHHHHHHHHhCC---CcEEEEEE
Confidence            994 2468999999999999999999996   47888753

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=1.1e-46  Score=354.12  Aligned_cols=237  Identities=29%  Similarity=0.520  Sum_probs=210.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhhhhhhccc----CCceEEEEecCCCHHHHhCCCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~----~~~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      ++||+|||| |+||+++++.|+..++++ |+|+|+++  +++.++|+.+..    ...+++.   ++|+ ++++|||+||
T Consensus         4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~Vi   77 (322)
T 1t2d_A            4 KAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG---SNTY-DDLAGADVVI   77 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE---ECCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEEE
Confidence            469999999 999999999999999864 99999987  577788888852    1234443   3577 8999999999


Q ss_pred             EcCCCCCCCCCc-----hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-ee
Q 021932          120 IPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM  193 (305)
Q Consensus       120 i~ag~~~~~g~~-----r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~  193 (305)
                      +++|.|+++|++     |.|++.+|++++++++++|++++|+++++++|||+|++|+++    ++.++||++||||+ |.
T Consensus        78 ~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~t~~~----~~~~g~~~~rviG~gt~  153 (322)
T 1t2d_A           78 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL----HQHSGVPKNKIIGLGGV  153 (322)
T ss_dssp             ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECCHH
T ss_pred             EeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHHH----HHhcCCChHHEEeccCc
Confidence            999999999999     999999999999999999999999999999999999998764    55679999999999 68


Q ss_pred             hhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----------CCChhHHHHHHHHHHhchhhhhccc
Q 021932          194 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAK  263 (305)
Q Consensus       194 Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k  263 (305)
                      ||++|+++++|+++|+++++|+++||||||+ +++|+||++.+.+          .+++++++++.++++++|++|++. 
T Consensus       154 ld~~R~~~~la~~lgv~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~-  231 (322)
T 1t2d_A          154 LDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL-  231 (322)
T ss_dssp             HHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH-
T ss_pred             ccHHHHHHHHHHHhCCCHHHeEEEEEcCCCC-cEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc-
Confidence            9999999999999999999999999999998 9999999998743          145666889999999999999996 


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          264 TGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       264 ~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                        ||+++||+|.++++++++|++|+   +.+++|+.
T Consensus       232 --kgs~~~~~a~a~~~~~~ai~~~~---~~v~~~s~  262 (322)
T 1t2d_A          232 --HASPYVAPAAAIIEMAESYLKDL---KKVLICST  262 (322)
T ss_dssp             --TSSCCHHHHHHHHHHHHHHHTTC---CEEEEEEE
T ss_pred             --cCchHHHHHHHHHHHHHHHHhCC---CCEEEEEE
Confidence              47899999999999999999986   47888753

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=7.3e-47  Score=356.07  Aligned_cols=239  Identities=34%  Similarity=0.569  Sum_probs=211.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC----CceEEEEecCCCHHHHhCCCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      ++||+|||| |.+|+++|+.|+..+++ +|+|+|+++  +.+.++|+.|...    ..+++.   ++|+ ++++|||+||
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~VI   87 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG---ENNY-EYLQNSDVVI   87 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE---CCCH-HHHCCCCEEE
Confidence            469999999 99999999999999986 499999988  5666788887631    234553   3577 8999999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee-ehhhHH
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVR  198 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t-~Lds~R  198 (305)
                      +++|.|+++|++|.|++.+|++++++++++|++++|+++++++|||+|++|+++    ++.++|||+||||+| .||++|
T Consensus        88 ~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~----~~~~~~~~~rviG~~t~Ld~~R  163 (328)
T 2hjr_A           88 ITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYF----KEKSGIPANKVCGMSGVLDSAR  163 (328)
T ss_dssp             ECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEESCHHHHHHH
T ss_pred             EcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHhcCCChhhEEEeCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999997664    567799999999995 899999


Q ss_pred             HHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCC----------CChhHHHHHHHHHHhchhhhhccccCCCC
Q 021932          199 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS----------LTPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (305)
Q Consensus       199 ~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~----------~~~~~~~~i~~~v~~~g~~i~~~k~gkg~  268 (305)
                      +++++|+++|++|++|+++||||||+ +++|+||++++.+.          +++++++++.++++++|++|++.. +||+
T Consensus       164 ~~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~-~~gs  241 (328)
T 2hjr_A          164 FRCNLSRALGVKPSDVSAIVVGGHGD-EMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGS  241 (328)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSCC
T ss_pred             HHHHHHHHhCCCHHHeeEEEecCCCC-ceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhh-CCCc
Confidence            99999999999999999999999998 99999999987541          456677899999999999999963 5789


Q ss_pred             chhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          269 ATLSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       269 t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      +.||+|.++++++++|++|.+   .+++|+.
T Consensus       242 ~~~~~a~a~~~i~~ai~~~~~---~v~~~~v  269 (328)
T 2hjr_A          242 AFYAPAASAVAMAQAYLKDSK---SVLVCST  269 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHcCCC---cEEEEEE
Confidence            999999999999999999864   7888753

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=9.6e-46  Score=348.46  Aligned_cols=245  Identities=23%  Similarity=0.316  Sum_probs=208.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCC----C--CchhhhhhhcccCCceEEEEecCCCHHHHh
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV----N--TPGVTADISHMDTNAVVRGFLGQQQLEDAL  112 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~-----~el~L~D~~----~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al  112 (305)
                      .+++||+||||+|+||+++++.|+..++.     .||+|+|++    +  +.+.++||.|..... ...+..++++++++
T Consensus         3 ~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~~al   81 (329)
T 1b8p_A            3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAHADPMTAF   81 (329)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEESSHHHHT
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEecCcHHHh
Confidence            34679999998899999999999988875     499999998    4  578899999963211 22222346788999


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEE
Q 021932          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLG  190 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s-~~p~~kviG  190 (305)
                      +|||+||++||.++++|++|.|++..|+++++++++++++++ |+++++++|||+|++|+++    ++.+ +||++|++|
T Consensus        82 ~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~----~~~~~~~p~~~v~g  157 (329)
T 1b8p_A           82 KDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIA----MKSAPSLPAKNFTA  157 (329)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEE
T ss_pred             CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHH----HHHcCCCCHHHEEE
Confidence            999999999999999999999999999999999999999997 9999999999999998765    5566 999999999


Q ss_pred             eeehhhHHHHHHHHHHhCCCCccee-EEEEcccCCcceeeccccCCCCC-C----CChhH--HHHHHHHHHhchhhhhcc
Q 021932          191 VTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-S----LTPTE--IDYLTDRIQNGGTEVVEA  262 (305)
Q Consensus       191 ~t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~g~~i~~~  262 (305)
                      +|.||+.|+++++|+++|++|++|+ .+||||||+ +++|+||++++.+ +    +++++  .+++.++++++|++|++.
T Consensus       158 ~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~-s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~  236 (329)
T 1b8p_A          158 MLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDA  236 (329)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHH
T ss_pred             eecHHHHHHHHHHHHHhCcCHHHceEEEEEeccCC-cEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999999999 578999998 9999999999864 2    23334  378999999999999998


Q ss_pred             ccCCCCchhH-HHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          263 KTGAGSATLS-MAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       263 k~gkg~t~~s-~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      |   |.++|+ .|.++++++++|++|..  +.+++|+.
T Consensus       237 k---g~~~~~~~a~a~~~~~~ai~~~~~--~~~~~~s~  269 (329)
T 1b8p_A          237 R---GVSSAASAANAAIDHIHDWVLGTA--GKWTTMGI  269 (329)
T ss_dssp             H---SSCCHHHHHHHHHHHHHHHHHCCT--TCCEEEEE
T ss_pred             c---CCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEE
Confidence            7   334444 56789999999999952  35788764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=6.3e-46  Score=346.17  Aligned_cols=236  Identities=25%  Similarity=0.355  Sum_probs=187.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-CceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      |||+|||| |.+|+++++.|+..++.+||+|+|+++  +.+.++|+.|... ....+...  +++ ++++|||+||+++|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~~-~a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH--GGH-SELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE--ECG-GGGTTCSEEEECC-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE--CCH-HHhCCCCEEEEcCC
Confidence            59999999 999999999999999989999999987  5777889988642 12233322  355 78999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHHH
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~~  202 (305)
                      .|+++|++|.|++.+|++++++++++|++++|+++++++|||+|++++++    ++.+  |++||||+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~----~~~~--~~~rviG~gt~Ld~~r~~~~  150 (304)
T 2v6b_A           77 ANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLA----TQLA--PGQPVIGSGTVLDSARFRHL  150 (304)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHH----HHHS--CSSCEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHH----HHhC--ChhcEEeCCcCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999998764    4554  89999999 99999999999


Q ss_pred             HHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCC------------CChhHHHHHHHHHHhchhhhhccccCCCCch
Q 021932          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS------------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (305)
Q Consensus       203 la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~------------~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~  270 (305)
                      +|+++|+++++|++|||||||+ +++|+||++++.+.            +++++++++.++++++|++|++.   ||+++
T Consensus       151 la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~~---kg~t~  226 (304)
T 2v6b_A          151 MAQHAGVDGTHAHGYVLGEHGD-SEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEG---KRATY  226 (304)
T ss_dssp             HHHHHTSCGGGEECCEEESSST-TEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC--------------CC
T ss_pred             HHHHhCcCHHHceEEEecCCCC-ceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhc---cCCcH
Confidence            9999999999999999999999 99999999998541            35667889999999999999994   58999


Q ss_pred             hHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          271 LSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       271 ~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      |++|.++++++++|++|.   +.+++|+.
T Consensus       227 ~~~a~a~~~~~~ai~~~~---~~~~~~~~  252 (304)
T 2v6b_A          227 YGIGAALARITEAVLRDR---RAVLTVSA  252 (304)
T ss_dssp             HHHHHHHHHHHHHHHTTC---CEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCC---CcEEEEEE
Confidence            999999999999999994   46787764

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=4.1e-45  Score=341.49  Aligned_cols=239  Identities=33%  Similarity=0.543  Sum_probs=210.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhhhhhhccc----CCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~----~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      |||+|||+ |.+|++++..|+..+...+|+|+|+++  +.+.++|+.|..    ...++..   ++|+ +++++||+||+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~~l~~aDvVii   75 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG---SNDY-ADTANSDIVII   75 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE---CCCH-HHHCCCCEEEE
Confidence            59999999 999999999999876556999999987  466667777752    1233443   3576 45999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHH
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRA  199 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~  199 (305)
                      +++.|+++|++|.|++.+|+++++++++.|++++|+++++++|||+|.+++++    ++.+++|++||||+ |.||++|+
T Consensus        76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~~~~~----~~~~~~~~~rviG~gt~ld~~r~  151 (310)
T 1guz_A           76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA----WVRSGLPKERVIGMAGVLDAARF  151 (310)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH----HHHHCSCGGGEEEECHHHHHHHH
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHHHHHH----HHhcCCChHHEEECCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999997654    66679999999999 99999999


Q ss_pred             HHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C----CChhHHHHHHHHHHhchhhhhccccCCCCchhHHH
Q 021932          200 NTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S----LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA  274 (305)
Q Consensus       200 ~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~s~A  274 (305)
                      ++++|+++|+++++|+++||||||+ +++|+||++++.+ +    +++++++++.++++++|++|++. .+||++.|++|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~-~~kgs~~~~~a  229 (310)
T 1guz_A          152 RSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPA  229 (310)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHH-HSSSCCCHHHH
T ss_pred             HHHHHHHhCCCHHHeEEEEEcccCC-cEeeeeecccCCCEEHHHHCCHHHHHHHHHHHHHhHHHHHhh-cCCCCcHHHHH
Confidence            9999999999999999999999998 9999999998854 1    57778999999999999999995 24689999999


Q ss_pred             HHHHHHHHHHHccCCCCCceeEEEE
Q 021932          275 YAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       275 ~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      .++++++++|++|+   +.+++|+.
T Consensus       230 ~a~~~~~~ai~~~~---~~~~~~~~  251 (310)
T 1guz_A          230 SSVVEMVESIVLDR---KRVLPCAV  251 (310)
T ss_dssp             HHHHHHHHHHHTTC---CEEEEEEE
T ss_pred             HHHHHHHHHHHcCC---CcEEEEEE
Confidence            99999999999996   47888743

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=3.2e-42  Score=323.04  Aligned_cols=238  Identities=26%  Similarity=0.459  Sum_probs=205.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-CceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      |||+|||+ |.+|++++..|+..++.++|+|+|+++  +.+.+.|+.|... ....+...  +|+ +++++||+||++++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~d~-~~~~~aDvViiav~   76 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA--GDY-ADLKGSDVVIVAAG   76 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE--CCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe--CCH-HHhCCCCEEEEccC
Confidence            59999999 999999999999988888999999986  4566667666431 11222222  254 78999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHHH
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTF  202 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~~  202 (305)
                      .++++|++|.|++.+|+++++++++.|++++|+++++++|||++++++++    ++.+++|++||||+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~----~~~~~~~~~rviG~~t~ld~~r~~~~  152 (319)
T 1a5z_A           77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF----LKESGMDPRKVFGSGTVLDTARLRTL  152 (319)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCTTTEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHH----HHHhCCChhhEEeeCccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987654    55668999999999 78999999999


Q ss_pred             HHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCC-----------CChhHHHHHHHHHHhchhhhhccccCCCCchh
Q 021932          203 VAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATL  271 (305)
Q Consensus       203 la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~-----------~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~~  271 (305)
                      +|+++|++|++|+++||||||+ +++|+||++++.+.           ++++.++++.++++++|+++++.   ||+++|
T Consensus       153 la~~lgv~~~~v~~~v~G~hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kg~~~~  228 (319)
T 1a5z_A          153 IAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIER---KGATHY  228 (319)
T ss_dssp             HHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHH---HSCCCH
T ss_pred             HHHHhCcCHHHceEEEEeCCCC-CcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhcc---CCchHH
Confidence            9999999999999999999999 99999999987531           45666889999999999999995   478999


Q ss_pred             HHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          272 SMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       272 s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      ++|.++++++++|++|.   +.+++|+.
T Consensus       229 ~~a~a~~~~~~ai~~~~---~~~~~~~~  253 (319)
T 1a5z_A          229 AIALAVADIVESIFFDE---KRVLTLSV  253 (319)
T ss_dssp             HHHHHHHHHHHHHHTTC---CEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCC---CCEEEEEE
Confidence            99999999999999984   46777754

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=3.1e-41  Score=314.63  Aligned_cols=238  Identities=20%  Similarity=0.310  Sum_probs=201.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC--CceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +||+|||+ |.+|++++..|+..++..+|+|+|+++  +.+.++|+.|...  ...++...  +|+ +++++||+||+++
T Consensus         2 ~kI~VIGa-G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~d~-~~~~~aDvViiav   77 (309)
T 1hyh_A            2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI--NDW-AALADADVVISTL   77 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE--SCG-GGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEe--CCH-HHhCCCCEEEEec
Confidence            69999998 999999999999888656999999986  4566667765431  12234322  466 8899999999999


Q ss_pred             CCCCC----CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhH
Q 021932          123 GVPRK----PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV  197 (305)
Q Consensus       123 g~~~~----~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~  197 (305)
                      +.+++    +|++|.|++.+|+++++++++.+.+++|+++++++|||+|++++++    ++.+++|++||+|+ |.||+.
T Consensus        78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~----~~~~~~~~~rvig~gt~ld~~  153 (309)
T 1hyh_A           78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALF----QHVTGFPAHKVIGTGTLLDTA  153 (309)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHH
T ss_pred             CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHHHHHHH----HHhcCCCHHHEeecCccchHH
Confidence            99988    9999999999999999999999999999999999999999987654    66679999999999 999999


Q ss_pred             HHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C------CChhHHHHHHHHHHhchhhhhccccCCCCch
Q 021932          198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S------LTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (305)
Q Consensus       198 R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~------~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~  270 (305)
                      |+++++++.+++++++++++++|+||+ +++|+||++.+.+ +      +++++|+++.++++++|+++++.|   |++.
T Consensus       154 r~~~~~a~~l~~~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~k---g~~~  229 (309)
T 1hyh_A          154 RMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GYTS  229 (309)
T ss_dssp             HHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHH---SSCC
T ss_pred             HHHHHHHHHhCCChhheEEEEEeCCCC-cEeeccccceECCEEHHHhccCCHHHHHHHHHHHHHhHHHHHhcc---CCch
Confidence            999999999999999999999999998 9999999998754 1      456778999999999999999964   7899


Q ss_pred             hHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          271 LSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       271 ~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      |++|.++++++++|++|.+   .+++|+.
T Consensus       230 ~~~a~a~~~~~~ai~~~~~---~~~~~~~  255 (309)
T 1hyh_A          230 YGVATSAIRIAKAVMADAH---AELVVSN  255 (309)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCC---cEEEEEE
Confidence            9999999999999999875   7888753

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=4.7e-40  Score=307.79  Aligned_cols=240  Identities=31%  Similarity=0.515  Sum_probs=209.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC----CceEEEEecCCCHHHHhCCCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      ++||+|||+ |.+|+.++..|+..|+. +|+|+|+++  +.+.++|+.+...    ..++..   ++|+ +++++||+||
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~a~~~aDiVi   77 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG---TDDY-ADISGSDVVI   77 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEEE
Confidence            469999999 99999999999998875 699999987  4555677776421    234443   3577 8899999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHH
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVR  198 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R  198 (305)
                      +++|.|+++|++|.|++.+|.+++++++++|++++|+++++++|||++++++.+    ++.+++|++||+|+ |.+|+.|
T Consensus        78 ~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~----~~~~~~~~~rviG~~t~ld~~r  153 (317)
T 2ewd_A           78 ITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHF----QKVSGLPHNKVCGMAGVLDSSR  153 (317)
T ss_dssp             ECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHCCCGGGEEESCHHHHHHH
T ss_pred             EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH----HHhhCCCHHHEEeccCcHHHHH
Confidence            999999999999999999999999999999999999999999999999987654    55678999999999 6899999


Q ss_pred             HHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----------CCChhHHHHHHHHHHhchhhhhccccCCCC
Q 021932          199 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (305)
Q Consensus       199 ~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~  268 (305)
                      +++.+++++|+++++++++|+|+||+ +++|+||++++.+          .++.++++++.+.++.++++++++. |+|+
T Consensus       154 ~~~~la~~lg~~~~~v~~~v~g~Hg~-~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~-g~g~  231 (317)
T 2ewd_A          154 FRTFIAQHFGVNASDVSANVIGGHGD-GMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGT  231 (317)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSSC
T ss_pred             HHHHHHHHhCcChhhceEEEEecCCC-ceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh-cCCc
Confidence            99999999999999999999999998 9999999997643          1467778899999999999999964 6789


Q ss_pred             chhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          269 ATLSMAYAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       269 t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                      +.|++|.++++++++|++|.+   .+++|+.+
T Consensus       232 ~~~~~a~a~~~~~~ai~~~~~---~~~~~~~~  260 (317)
T 2ewd_A          232 AYFAPAAAAVKMAEAYLKDKK---AVVPCSAF  260 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHcCCC---eEEEEEEE
Confidence            999999999999999998864   68887654

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=2.4e-36  Score=283.53  Aligned_cols=245  Identities=24%  Similarity=0.368  Sum_probs=203.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCCC----CchhhhhhhcccCCceEEEEecCCCHHHHhCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMD  116 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~-----~el~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aD  116 (305)
                      +|||+|+||+|++|++++..|+..++.     .||+++|+++    +.+.++|+.|... +.+..+..+.+++++++++|
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~-~~~~di~~~~~~~~a~~~~D   82 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-PLLAGLEATDDPKVAFKDAD   82 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTTCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccc-cccCCeEeccChHHHhCCCC
Confidence            479999999999999999999988865     4999999864    3567789987531 11222222346778999999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEEeeeh
Q 021932          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGVTML  194 (305)
Q Consensus       117 iVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s-~~p~~kviG~t~L  194 (305)
                      +||++||.+++++++|.+++..|+++++++++.+++++ |+++++++|||+|.++++.    ++.+ ++||.++.|.|.+
T Consensus        83 ~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~----~~~~~~~~p~~~yg~tkl  158 (327)
T 1y7t_A           83 YALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA----YKNAPGLNPRNFTAMTRL  158 (327)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEECCHH
T ss_pred             EEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHH----HHHcCCCChhheeccchH
Confidence            99999999998999999999999999999999999998 9999999999999887654    4455 7999999999999


Q ss_pred             hhHHHHHHHHHHhCCCCccee-EEEEcccCCcceeeccccCCCCC----C-CChhH-HHHHHHHHHhchhhhhccccCCC
Q 021932          195 DVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC----S-LTPTE-IDYLTDRIQNGGTEVVEAKTGAG  267 (305)
Q Consensus       195 ds~R~~~~la~~l~v~~~~V~-~~vlG~hg~~t~vp~~S~~~v~~----~-~~~~~-~~~i~~~v~~~g~~i~~~k~gkg  267 (305)
                      |+.|+++.+++++|+++..++ .+|+|+||+ +++|.|+++.+.+    . ++++. ++++.++++++|++|++.| | +
T Consensus       159 ~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~v~~~g~~ii~~k-g-~  235 (327)
T 1y7t_A          159 DHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-G-A  235 (327)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH-S-S
T ss_pred             HHHHHHHHHHHHhCcChhheeeeEEEcCCCC-eEEEEeeeeeeCCeeHHHhccchhHHHHHHHHHHHHHHHHHHcc-C-C
Confidence            999999999999999999999 589999998 8999999988754    1 23222 4799999999999999987 3 2


Q ss_pred             CchhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          268 SATLSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       268 ~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      ++.+++|.++++++++|++|++ ++.+++|+.
T Consensus       236 ~~~~~~a~a~~~~~~~i~~~~~-~~~~~~~~~  266 (327)
T 1y7t_A          236 SSAASAANAAIEHIRDWALGTP-EGDWVSMAV  266 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHTBCC-TTCCEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHcCCC-CCeEEEEEE
Confidence            3344678899999999999973 345888764

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=100.00  E-value=6.1e-34  Score=265.34  Aligned_cols=239  Identities=23%  Similarity=0.389  Sum_probs=202.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-CceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +|||+|||+ |.||+.++..|+..++.++|+|+|+++  +.+.++|+.|... ....+... ++++ +++++||+||+++
T Consensus         7 ~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~-~~~~~aD~Vii~v   83 (319)
T 1lld_A            7 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDG-SDDP-EICRDADMVVITA   83 (319)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEE-ESCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEe-CCCH-HHhCCCCEEEECC
Confidence            579999999 999999999999999888999999986  4555677766432 11222221 2354 7899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehhhHHHHH
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANT  201 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Lds~R~~~  201 (305)
                      +.++++|++|.|++.+|+++++++++.+++++|++++++++||++.++++.    ++.+++|++||+|. |.+|+.|++.
T Consensus        84 ~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~~~~~~----~~~~~~~~~~vig~~~~l~~~r~~~  159 (319)
T 1lld_A           84 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA----QKLTGLPENQIFGSGTNLDSARLRF  159 (319)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHTCCTTSEEECTTHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHHHHHHH----HHhcCCCHHHEeeccccHhHHHHHH
Confidence            999999999999999999999999999999999999999999999987654    45568999999999 8999999999


Q ss_pred             HHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----C---------CChhHHHHHHHHHHhchhhhhccccCCCC
Q 021932          202 FVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----S---------LTPTEIDYLTDRIQNGGTEVVEAKTGAGS  268 (305)
Q Consensus       202 ~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----~---------~~~~~~~~i~~~v~~~g~~i~~~k~gkg~  268 (305)
                      .+++.+++++.+++.+++|+||+ +++|+|+++.+++    .         .+++.++++.+++++.+++|++.   +|+
T Consensus       160 ~~a~~~~v~~~~v~~~~~G~~g~-~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~---~G~  235 (319)
T 1lld_A          160 LIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIING---KGA  235 (319)
T ss_dssp             HHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTS---CCS
T ss_pred             HHHHHhCCCHHHeEEEEEeCCCC-ceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhC---CCC
Confidence            99999999999999999999998 8999999987642    1         12333788999999999999985   478


Q ss_pred             chhHHHHHHHHHHHHHHccCCCCCceeEEE
Q 021932          269 ATLSMAYAAAKFADACLRGLRGDAGVIECA  298 (305)
Q Consensus       269 t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a  298 (305)
                      +.+++|.+.++|+++|++|.   +.+++|+
T Consensus       236 ~~~~~a~~~~sm~~di~~~~---~~ei~~s  262 (319)
T 1lld_A          236 TNYAIGMSGVDIIEAVLHDT---NRILPVS  262 (319)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC---CEEEEEE
T ss_pred             chHHHHHHHHHHHHHHHcCC---CcEEEEE
Confidence            88999999999999999885   4666664

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=100.00  E-value=8.6e-35  Score=281.60  Aligned_cols=235  Identities=14%  Similarity=0.120  Sum_probs=180.0

Q ss_pred             CCEEEEEcCCCchHHHH--HHHHHh--CCC-CcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEE
Q 021932           46 GFKVAVLGAAGGIGQPL--AMLMKI--NPL-VSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~l--a~~L~~--~~~-~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiV  118 (305)
                      ++||+|||| |++ .+.  +..|+.  .++ .+||+|+|+++  +++ +.|+.+.......+.. .++|++++++|||+|
T Consensus         2 ~~KI~IIGa-G~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~-~~~~~~~~~~~~~~v~-~t~d~~~al~~AD~V   77 (417)
T 1up7_A            2 HMRIAVIGG-GSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKI-VVDFVKRLVKDRFKVL-ISDTFEGAVVDAKYV   77 (417)
T ss_dssp             CCEEEEETT-TCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHH-HHHHHHHHHTTSSEEE-ECSSHHHHHTTCSEE
T ss_pred             CCEEEEECC-CHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHH-HHHHHHHHhhCCeEEE-EeCCHHHHhCCCCEE
Confidence            479999999 886 332  334555  676 89999999987  333 5566553211113322 246888999999999


Q ss_pred             EEcCCCCCCCCCchhh--------------------HHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHH
Q 021932          119 IIPAGVPRKPGMTRDD--------------------LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK  178 (305)
Q Consensus       119 Ii~ag~~~~~g~~r~d--------------------~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~  178 (305)
                      |+++|.++++|++|.+                    +..+|+++++++++.|+++| |||+|++|||+|++|+.+    +
T Consensus        78 iitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvdi~t~a~----~  152 (417)
T 1up7_A           78 IFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSGHITEFV----R  152 (417)
T ss_dssp             EECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHHHHHHHH----H
T ss_pred             EEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHHHHHHHH----H
Confidence            9999999988888843                    35899999999999999999 999999999999998654    6


Q ss_pred             HhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCCcceeEEEEc-----------ccCCcceeeccccC---CCCC----CC
Q 021932          179 KVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-----------GHAGVTILPLLSQV---KPSC----SL  240 (305)
Q Consensus       179 ~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~vlG-----------~hg~~t~vp~~S~~---~v~~----~~  240 (305)
                      +.+  |++||||+|+.. .|+++.+|+.||++|++|+++++|           +||+ +++|.||..   ++.+    ++
T Consensus       153 k~~--p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG~-d~~p~~~~~~~~~~~~~~~~~~  228 (417)
T 1up7_A          153 NYL--EYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGE-DVTEKVFENLKLKLSNIPDEDF  228 (417)
T ss_dssp             HTT--CCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHTTC---CCTTSC
T ss_pred             HhC--CCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecCCc-EehhhHHHHHHHhhCCCcCCch
Confidence            654  788999998643 499999999999999999999999           9999 999999985   3321    23


Q ss_pred             ---------------------ChhHHHHH---------HHHHHhchhhhh--------ccccCCCCchhHHHHHHHHHHH
Q 021932          241 ---------------------TPTEIDYL---------TDRIQNGGTEVV--------EAKTGAGSATLSMAYAAAKFAD  282 (305)
Q Consensus       241 ---------------------~~~~~~~i---------~~~v~~~g~~i~--------~~k~gkg~t~~s~A~a~~~~~~  282 (305)
                                           +++.++++         .+++++.+++++        ++. +||++  ++|.+++++++
T Consensus       229 ~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l~-~kg~t--~~~~~a~~ii~  305 (417)
T 1up7_A          229 PTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELT-KRGGS--MYSTAAAHLIR  305 (417)
T ss_dssp             CHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGG-GSTTT--THHHHHHHHHH
T ss_pred             HHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhhh-hcCCc--HHHHHHHHHHH
Confidence                                 12333444         577888899998        322 35666  44889999999


Q ss_pred             HHHccCCCCCceeEEEE
Q 021932          283 ACLRGLRGDAGVIECAY  299 (305)
Q Consensus       283 ai~~~~~~~~~i~~~a~  299 (305)
                      ||++|.+   .+++|+.
T Consensus       306 AI~~d~~---~~~~vsv  319 (417)
T 1up7_A          306 DLETDEG---KIHIVNT  319 (417)
T ss_dssp             HHHSSSC---EEEEEEE
T ss_pred             HHHcCCC---eEEEEEE
Confidence            9999964   6777765

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=1.2e-34  Score=283.05  Aligned_cols=239  Identities=15%  Similarity=0.161  Sum_probs=182.8

Q ss_pred             CCEEEEEcCCCch-HHHHHHHHHh--CCC-CcEEEEEeCCC--Cchh-hhhhhcc-----cCCceEEEEecCCCHHHHhC
Q 021932           46 GFKVAVLGAAGGI-GQPLAMLMKI--NPL-VSVLHLYDVVN--TPGV-TADISHM-----DTNAVVRGFLGQQQLEDALT  113 (305)
Q Consensus        46 ~~KI~IIGaaG~V-Gs~la~~L~~--~~~-~~el~L~D~~~--~~g~-~~DL~~~-----~~~~~v~~~~~t~d~~~al~  113 (305)
                      ++||+|||| |++ |..++..|+.  .++ .+||+|+|+++  .+.. ..|+.+.     ....+++.   ++|++++++
T Consensus         7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~---t~D~~eal~   82 (450)
T 1s6y_A            7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL---TLDRRRALD   82 (450)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEE---eCCHHHHhC
Confidence            579999999 998 7777777776  566 78999999976  3211 2233321     12234443   468889999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhH--------------------HHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHH
Q 021932          114 GMDIVIIPAGVPRKPGMTRDDL--------------------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIA  173 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~d~--------------------~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~  173 (305)
                      |||+||+++|.++++|++|+++                    +.+|+++++++++.|+++||+||++++|||+|++|+.+
T Consensus        83 gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~  162 (450)
T 1s6y_A           83 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV  162 (450)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            9999999999999888888744                    78999999999999999999999999999999998654


Q ss_pred             HHHHHHhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCCcceeEEEEc-----------ccCCcceeeccccCCCC----C
Q 021932          174 AEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-----------GHAGVTILPLLSQVKPS----C  238 (305)
Q Consensus       174 ~~~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~vlG-----------~hg~~t~vp~~S~~~v~----~  238 (305)
                          ++.+  |++||||+|+.. .|+++++|+.||+++++|+++++|           +||+ +++|.|+.....    +
T Consensus       163 ----~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G~-d~~p~~~~~~~~~~~~g  234 (450)
T 1s6y_A          163 ----LRYT--KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV-EVTEKVIDLVAHPDRSG  234 (450)
T ss_dssp             ----HHHC--CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHSCC----
T ss_pred             ----HHhC--CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCCc-CchHhHHHHHhhhcccc
Confidence                6664  788999998765 499999999999999999999999           9998 999999974321    0


Q ss_pred             ---------CCC---------------------hhH-------------HHHHHHHHHhchhhhh-----ccccCC--CC
Q 021932          239 ---------SLT---------------------PTE-------------IDYLTDRIQNGGTEVV-----EAKTGA--GS  268 (305)
Q Consensus       239 ---------~~~---------------------~~~-------------~~~i~~~v~~~g~~i~-----~~k~gk--g~  268 (305)
                               ++.                     ++.             +.++.+++++.+++++     +.|.-.  +.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~~~~~  314 (450)
T 1s6y_A          235 VTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKR  314 (450)
T ss_dssp             --------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------C
T ss_pred             ccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccchhhcc
Confidence                     111                     121             2256778888999999     433100  13


Q ss_pred             chhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          269 ATLSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       269 t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      +.+++|.+++++++||++|.+   .+++|+.
T Consensus       315 ~~~~~~~~a~~ii~AI~~d~~---~~~~vsv  342 (450)
T 1s6y_A          315 GGAYYSDAACSLISSIYNDKR---DIQPVNT  342 (450)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCC---CEEEEEE
T ss_pred             cchHHHHHHHHHHHHHHcCCC---eEEEEEe
Confidence            445778999999999999965   5777764

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=1.3e-34  Score=283.98  Aligned_cols=199  Identities=19%  Similarity=0.272  Sum_probs=146.7

Q ss_pred             hhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCch-HHHHHHHHHhC--CC-CcEEEEEeCCC--Cchhhhhhh
Q 021932           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGI-GQPLAMLMKIN--PL-VSVLHLYDVVN--TPGVTADIS   91 (305)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~V-Gs~la~~L~~~--~~-~~el~L~D~~~--~~g~~~DL~   91 (305)
                      |-|.+|+.|--|.-.|-    +- |.++++||+|||| |.+ |..++..|+.+  ++ ..||+|+|+++  +++ ..|+.
T Consensus         5 ~~~~~~~~~~~~~~~~~----~~-m~m~~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~-~~~~~   77 (472)
T 1u8x_X            5 HHHSSGVDLGTENLYFQ----SN-MKKKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDR-IAGAC   77 (472)
T ss_dssp             --------------------------CCCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHH-HHHHH
T ss_pred             cccccccccCccceeec----cc-cccCCCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHH-HHHHH
Confidence            66788988866653332    21 2123469999999 998 55577777777  77 78999999987  333 23444


Q ss_pred             ccc-----CCceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhH--------------------HHhhHHHHHHH
Q 021932           92 HMD-----TNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDL--------------------FNINAGIVKTL  146 (305)
Q Consensus        92 ~~~-----~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~--------------------~~~N~~i~~~i  146 (305)
                      +..     ...+++.   ++|++++++|||+||+++|.++++|++|.++                    +.+|+++++++
T Consensus        78 ~~~l~~~~~~~~I~~---t~D~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i  154 (472)
T 1u8x_X           78 DVFIREKAPDIEFAA---TTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEI  154 (472)
T ss_dssp             HHHHHHHCTTSEEEE---ESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCCCEEEE---ECCHHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHH
Confidence            321     2344554   4688899999999999999988888888444                    78999999999


Q ss_pred             HHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCC-cceeEEEEc-----
Q 021932          147 CEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVDVPVVG-----  220 (305)
Q Consensus       147 ~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~-~~V~~~vlG-----  220 (305)
                      +++|+++||+||+|++|||+|++|+.+    ++.+  |++||||+|+.. .|+++++|+.||++| ++|+++++|     
T Consensus       155 ~~~i~~~~P~A~ii~~TNPvdi~T~~~----~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~~  227 (472)
T 1u8x_X          155 LDYMEKYSPDAWMLNYSNPAAIVAEAT----RRLR--PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHFG  227 (472)
T ss_dssp             HHHHHHHCTTCEEEECCSCHHHHHHHH----HHHS--TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTEE
T ss_pred             HHHHHHHCCCeEEEEeCCcHHHHHHHH----HHhC--CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEEeccchhh
Confidence            999999999999999999999997654    6664  888999998654 399999999999998 999999999     


Q ss_pred             ------c-cCCcceeeccccC
Q 021932          221 ------G-HAGVTILPLLSQV  234 (305)
Q Consensus       221 ------~-hg~~t~vp~~S~~  234 (305)
                            + ||+ +++|.||..
T Consensus       228 W~~~~~~~hG~-d~~p~~~~~  247 (472)
T 1u8x_X          228 WWTSIQDQEGN-DLMPKLKEH  247 (472)
T ss_dssp             EEEEEEETTCC-BCHHHHHHH
T ss_pred             heeeeEeCCCC-EehHhHHHH
Confidence                  8 999 899999974

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.93  E-value=4.5e-26  Score=223.57  Aligned_cols=161  Identities=24%  Similarity=0.269  Sum_probs=125.3

Q ss_pred             CCEEEEEcCCCchHHHH--HHHHHhC-CC-CcEEEEEeCCC--Cchhhhhhhcc-----cCCceEEEEecCCCHHHHhCC
Q 021932           46 GFKVAVLGAAGGIGQPL--AMLMKIN-PL-VSVLHLYDVVN--TPGVTADISHM-----DTNAVVRGFLGQQQLEDALTG  114 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~l--a~~L~~~-~~-~~el~L~D~~~--~~g~~~DL~~~-----~~~~~v~~~~~t~d~~~al~~  114 (305)
                      ++||+|||| |.||.+.  +..|+.. ++ ..||+|+|+++  +.+ +.++.+.     ....+++.   ++|++++++|
T Consensus         3 ~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~-~~~~~~~~l~~~~~~~~I~~---ttD~~eal~d   77 (480)
T 1obb_A            3 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDA-ILTIAKKYVEEVGADLKFEK---TMNLDDVIID   77 (480)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHH-HHHHHHHHHHHTTCCCEEEE---ESCHHHHHTT
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCcEEEE---ECCHHHHhCC
Confidence            569999999 9986554  5677643 33 56999999987  233 2332221     12234543   4688899999


Q ss_pred             CCEEEEcCCC------------CCCCCCch--hh------------HHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 021932          115 MDIVIIPAGV------------PRKPGMTR--DD------------LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (305)
Q Consensus       115 aDiVIi~ag~------------~~~~g~~r--~d------------~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~  168 (305)
                      ||+||+++|.            |.|+|+.|  .|            ++.+|+++++++++.|+++||+||+|++|||+|+
T Consensus        78 AD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi  157 (480)
T 1obb_A           78 ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFE  157 (480)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHH
T ss_pred             CCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHH
Confidence            9999999986            45566555  33            3789999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCCcceeEEEEc
Q 021932          169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG  220 (305)
Q Consensus       169 lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~vlG  220 (305)
                      +|+++    ++   +|++||||+|+++. ++++++ +.+|++|++|+++|+|
T Consensus       158 ~t~~~----~k---~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v~G  200 (480)
T 1obb_A          158 GTTLV----TR---TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQVAG  200 (480)
T ss_dssp             HHHHH----HH---HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEEEE
T ss_pred             HHHHH----HH---CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEEEe
Confidence            98754    54   78999999986444 378999 9999999999999999

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=99.92  E-value=4.2e-25  Score=215.19  Aligned_cols=176  Identities=22%  Similarity=0.340  Sum_probs=136.7

Q ss_pred             CCCCEEEEEcCCCchH--HHHHHHHHhCC-CCcEEEEEeCCC--Cc--hhhhhhhcccCCceEEEEecCCCHHHHhCCCC
Q 021932           44 SPGFKVAVLGAAGGIG--QPLAMLMKINP-LVSVLHLYDVVN--TP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMD  116 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VG--s~la~~L~~~~-~~~el~L~D~~~--~~--g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aD  116 (305)
                      .+.+||+|||| |++|  ..++..|+... +..+|+|+|+++  +.  +...+.... ...+++   .++|+++|++|||
T Consensus         3 m~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~-~~~~I~---~TtD~~eAl~dAD   77 (450)
T 3fef_A            3 LDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGN-GRWRYE---AVSTLKKALSAAD   77 (450)
T ss_dssp             CCCEEEEEETT-TCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTT-SCEEEE---EESSHHHHHTTCS
T ss_pred             CCCCEEEEECC-ChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhc-cCCeEE---EECCHHHHhcCCC
Confidence            34579999999 9985  57777777643 345999999986  11  122222111 122333   3578999999999


Q ss_pred             EEEEcCC------------CCCCCCCchh--hHHH--------hhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHH
Q 021932          117 IVIIPAG------------VPRKPGMTRD--DLFN--------INAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA  174 (305)
Q Consensus       117 iVIi~ag------------~~~~~g~~r~--d~~~--------~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~  174 (305)
                      +||++++            .|+|+|+.|.  |...        +|+++++++++.|+++||+||+|++|||+|++|+++ 
T Consensus        78 fVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~-  156 (450)
T 3fef_A           78 IVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVL-  156 (450)
T ss_dssp             EEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH-
T ss_pred             EEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH-
Confidence            9999985            5888998776  5444        999999999999999999999999999999998754 


Q ss_pred             HHHHHhCCCCCCcEEEeeehhhHHHHHHHHHHh----C---CCCcceeEEEEc-ccCCcceeeccccCCC
Q 021932          175 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVL----G---LDPREVDVPVVG-GHAGVTILPLLSQVKP  236 (305)
Q Consensus       175 ~~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l----~---v~~~~V~~~vlG-~hg~~t~vp~~S~~~v  236 (305)
                         ++.  +|+.||||+|+.. .+++..+|+.|    |   +++++|+..+.| +|     +.+|++.++
T Consensus       157 ---~k~--~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH-----~~w~~~~~~  215 (450)
T 3fef_A          157 ---YKV--FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINH-----FTWITKASY  215 (450)
T ss_dssp             ---HHH--CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETT-----EEEEEEEEE
T ss_pred             ---HHH--CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecC-----eEeEEEEEE
Confidence               544  7899999999865 68999999999    5   779999999999 77     556666654

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.91  E-value=5.4e-25  Score=216.32  Aligned_cols=174  Identities=24%  Similarity=0.254  Sum_probs=131.9

Q ss_pred             CEEEEEcCCCchHHHHH--HHHHhCC----CCcEEEEEeCCC--CchhhhhhhcccC--CceEEEEecCCCHHHHhCCCC
Q 021932           47 FKVAVLGAAGGIGQPLA--MLMKINP----LVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMD  116 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la--~~L~~~~----~~~el~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aD  116 (305)
                      |||+|||| |++|.+..  ..++...    ..+||+|+|+++  +++...++.+...  ...++.. .++|+++|++|||
T Consensus         1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~-~t~d~~eAl~gAD   78 (477)
T 3u95_A            1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVV-KTESLDEAIEGAD   78 (477)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEE-EESCHHHHHTTCS
T ss_pred             CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEE-EeCCHHHHhCCCC
Confidence            69999999 99987743  3344432    347999999987  5566666666531  2333432 3578999999999


Q ss_pred             EEEEcCCC-------------------CCCCCCchhhHH---------------HhhHHHHHHHHHHHHHhCCCcEEEEe
Q 021932          117 IVIIPAGV-------------------PRKPGMTRDDLF---------------NINAGIVKTLCEGIAKCCPKAIVNLI  162 (305)
Q Consensus       117 iVIi~ag~-------------------~~~~g~~r~d~~---------------~~N~~i~~~i~~~I~~~~p~aiviv~  162 (305)
                      +||+++|.                   |+|+|++|.++.               .+|++++.++++.|+++|||||+||+
T Consensus        79 ~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~in~  158 (477)
T 3u95_A           79 FIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLMQT  158 (477)
T ss_dssp             EEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             EEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Confidence            99999974                   346777665543               25899999999999999999999999


Q ss_pred             cCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccc
Q 021932          163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS  232 (305)
Q Consensus       163 tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S  232 (305)
                      |||++++|+.+    ++.++   .|++|+|+-.  +....+++.||+++++|+..+.|-||. +.+..|+
T Consensus       159 tNP~~i~t~a~----~~~~~---~k~vGlC~~~--~~~~~~~~~Lg~~~~~v~~~~~GlNH~-~w~~~~~  218 (477)
T 3u95_A          159 ANPVFEITQAV----RRWTG---ANIIGFCHGV--AGVYEVFERLGLDPEEVDWQVAGVNHG-IWLNRFR  218 (477)
T ss_dssp             SSCHHHHHHHH----HHHHC---CCEEEECCGG--GHHHHHHHHTTCCGGGEEEEEEEETTE-EEEEEEE
T ss_pred             cChHHHHHHHH----HHhCC---CCeEEECCCH--HHHHHHHHHhCCCHHHcEEEEeecCCC-eeeeeee
Confidence            99999998754    45444   5899999633  344567888999999999999997776 5655554

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.96  E-value=1e-09  Score=102.39  Aligned_cols=119  Identities=13%  Similarity=0.170  Sum_probs=86.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C--chh--h---h-hhhccc----------CCceEEEEecCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--T---A-DISHMD----------TNAVVRGFLGQQ  106 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~--~g~--~---~-DL~~~~----------~~~~v~~~~~t~  106 (305)
                      ..||+|||| |.+|+.+|..++..|+  +|+|+|+++ .  .+.  .   + .+....          ...++..   ++
T Consensus         6 ~~~VaViGa-G~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~---~~   79 (319)
T 3ado_A            6 AGDVLIVGS-GLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS---CT   79 (319)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE---EC
T ss_pred             CCeEEEECC-cHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc---cc
Confidence            459999999 9999999999999999  999999986 1  111  0   1 111110          0123443   46


Q ss_pred             CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 021932          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (305)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~  185 (305)
                      |+++++++||+||.++              .+|.++.+++..+|++++ |++++  .||.+.+...-+    ..... .|
T Consensus        80 ~l~~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~aIl--aSNTSsl~is~i----a~~~~-~p  138 (319)
T 3ado_A           80 NLAEAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRVVL--SSSSSCLLPSKL----FTGLA-HV  138 (319)
T ss_dssp             CHHHHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSSEE--EECCSSCCHHHH----HTTCT-TG
T ss_pred             chHhHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhccee--ehhhhhccchhh----hhhcc-CC
Confidence            8888999999999985              347899999999999999 57766  899998765322    23333 46


Q ss_pred             CcEEEe
Q 021932          186 KRLLGV  191 (305)
Q Consensus       186 ~kviG~  191 (305)
                      +|++|+
T Consensus       139 ~r~ig~  144 (319)
T 3ado_A          139 KQCIVA  144 (319)
T ss_dssp             GGEEEE
T ss_pred             CcEEEe
Confidence            899997

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.72  E-value=5.4e-08  Score=91.97  Aligned_cols=123  Identities=14%  Similarity=0.168  Sum_probs=72.8

Q ss_pred             hhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc----
Q 021932           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----   93 (305)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~----   93 (305)
                      |-|.+|+.|--+. .|.+.++   |..++|||+|||+ |.+|..+|..|+..|+  +|.++|+++....  .+...    
T Consensus         5 ~~~~~~~~~~~~~-~~~~~~~---m~~~~mkI~VIGa-G~mG~alA~~La~~G~--~V~l~~r~~~~~~--~i~~~~~~~   75 (356)
T 3k96_A            5 HHHSSGVDLGTEN-LYFQSNA---MEPFKHPIAILGA-GSWGTALALVLARKGQ--KVRLWSYESDHVD--EMQAEGVNN   75 (356)
T ss_dssp             --------------------------CCCSCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSCHHHHH--HHHHHSSBT
T ss_pred             cccccccccCcch-hhhhhhc---ccccCCeEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHcCCCc
Confidence            6688899883333 3444444   4445689999999 9999999999999998  9999999752111  11110    


Q ss_pred             ------cCCceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 021932           94 ------DTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (305)
Q Consensus        94 ------~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPv  166 (305)
                            .....++.   ++|+++++++||+||++..                ...++++++++..+. |+.+++.++|-.
T Consensus        76 ~~l~g~~l~~~i~~---t~d~~ea~~~aDvVilaVp----------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi  136 (356)
T 3k96_A           76 RYLPNYPFPETLKA---YCDLKASLEGVTDILIVVP----------------SFAFHEVITRMKPLIDAKTRIAWGTKGL  136 (356)
T ss_dssp             TTBTTCCCCTTEEE---ESCHHHHHTTCCEEEECCC----------------HHHHHHHHHHHGGGCCTTCEEEECCCSC
T ss_pred             ccCCCCccCCCeEE---ECCHHHHHhcCCEEEECCC----------------HHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence                  01123443   3578889999999999852                135777788888776 678888888866


Q ss_pred             Cc
Q 021932          167 NS  168 (305)
Q Consensus       167 d~  168 (305)
                      +.
T Consensus       137 ~~  138 (356)
T 3k96_A          137 AK  138 (356)
T ss_dssp             BT
T ss_pred             Cc
Confidence            54

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.69  E-value=7e-08  Score=99.26  Aligned_cols=118  Identities=16%  Similarity=0.233  Sum_probs=85.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C--chh--hh-hhh---------ccc-CCceEEEEecCCCHH
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TA-DIS---------HMD-TNAVVRGFLGQQQLE  109 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~--~g~--~~-DL~---------~~~-~~~~v~~~~~t~d~~  109 (305)
                      ..||+|||| |.+|+.+|+.++..|+  +|+|+|+++ .  .+.  .. .+.         ... ...++..   ++++ 
T Consensus       316 i~~v~ViGa-G~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~-  388 (742)
T 3zwc_A          316 VSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSST-  388 (742)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE---ESCG-
T ss_pred             ccEEEEEcc-cHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc---cCcH-
Confidence            469999999 9999999999999999  999999986 1  111  00 010         000 1233443   3465 


Q ss_pred             HHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcE
Q 021932          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (305)
Q Consensus       110 ~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kv  188 (305)
                      +++++||+||.++              .+|.++.+++.+++++++ |++|+  .||.+.+-..-+    ...+. .|+|+
T Consensus       389 ~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~aIl--ASNTSsl~i~~i----a~~~~-~p~r~  447 (742)
T 3zwc_A          389 KELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGAFL--CTNTSALNVDDI----ASSTD-RPQLV  447 (742)
T ss_dssp             GGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHHHH----HTTSS-CGGGE
T ss_pred             HHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCceE--EecCCcCChHHH----HhhcC-Ccccc
Confidence            7799999999985              357899999999999999 67766  799988754322    23333 46789


Q ss_pred             EEe
Q 021932          189 LGV  191 (305)
Q Consensus       189 iG~  191 (305)
                      +|+
T Consensus       448 ig~  450 (742)
T 3zwc_A          448 IGT  450 (742)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            997

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=98.67  E-value=1.7e-07  Score=86.51  Aligned_cols=137  Identities=17%  Similarity=0.151  Sum_probs=77.0

Q ss_pred             hhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCc
Q 021932           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA   97 (305)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~   97 (305)
                      |-|||+++..-..+.         +..++|||.|+||+|++|++++..|+..|...+|+.+|..........+.......
T Consensus         5 ~~~~~~~~~~~~n~~---------~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~   75 (346)
T 4egb_A            5 HHHSSGVDLGTENLY---------FQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHP   75 (346)
T ss_dssp             ----------------------------CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCT
T ss_pred             cccccccccCccccc---------cccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCC
Confidence            446777665433321         33456799999999999999999999988444888998765222222222221123


Q ss_pred             eEEEEecC----CCHHHHhCC--CCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932           98 VVRGFLGQ----QQLEDALTG--MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus        98 ~v~~~~~t----~d~~~al~~--aDiVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .+..+.+.    .++.+++++  +|+||.+|+.....  .....+.+..|+.....+++.+.+.+..-+|.+.|
T Consensus        76 ~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS  149 (346)
T 4egb_A           76 NYYFVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVST  149 (346)
T ss_dssp             TEEEEECCTTCHHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred             CeEEEEcCCCCHHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence            34433221    234556666  99999999864321  13345678889999999999999887655555444

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=98.66  E-value=9.9e-08  Score=88.12  Aligned_cols=108  Identities=19%  Similarity=0.260  Sum_probs=76.4

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch----hhhhhhcccCCceEEEEecCCCHHHHhCCCCE
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTNAVVRGFLGQQQLEDALTGMDI  117 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g----~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDi  117 (305)
                      ...+.+||.|+||+|++|++++..|+..|+  +|+++|++....    ...|+.+            ..++.++++++|+
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~Dl~d------------~~~~~~~~~~~d~   80 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSGTGGEEVVGSLED------------GQALSDAIMGVSA   80 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCSSCCSEEESCTTC------------HHHHHHHHTTCSE
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCCCccEEecCcCC------------HHHHHHHHhCCCE
Confidence            344557999999999999999999999998  999999875320    0111111            1235678899999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       118 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ||.+|+..........+.+..|+.....+++.+.+.+...+|.+.|
T Consensus        81 vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS  126 (347)
T 4id9_A           81 VLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS  126 (347)
T ss_dssp             EEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             EEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence            9999986543333346778889999999999999877655655555

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.64  E-value=7.4e-08  Score=87.81  Aligned_cols=101  Identities=18%  Similarity=0.261  Sum_probs=68.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhc--------------cc---CCceEEEEecCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH--------------MD---TNAVVRGFLGQQ  106 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~--------------~~---~~~~v~~~~~t~  106 (305)
                      .+||+|||+ |.+|+.+|..++..|+  +|+++|+++.  ......+.+              ..   ...++..   ++
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~---~~   77 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY---SD   77 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE---ES
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE---eC
Confidence            459999998 9999999999999998  9999999861  111111100              00   0012333   35


Q ss_pred             CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 021932          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (305)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~  168 (305)
                      ++++++++||+||++..              .+.+..+++.+++.+.. |+++++  ||...+
T Consensus        78 ~~~~~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~il~--s~tS~~  124 (283)
T 4e12_A           78 DLAQAVKDADLVIEAVP--------------ESLDLKRDIYTKLGELAPAKTIFA--TNSSTL  124 (283)
T ss_dssp             CHHHHTTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEEE--ECCSSS
T ss_pred             CHHHHhccCCEEEEecc--------------CcHHHHHHHHHHHHhhCCCCcEEE--ECCCCC
Confidence            77788999999999863              13566777778888887 566654  444433

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=98.57  E-value=6.1e-07  Score=81.71  Aligned_cols=107  Identities=18%  Similarity=0.149  Sum_probs=76.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ++||.|+||+|++|++++..|+..|+  +|+.++++.....   +...   ..+.. .. ..++.++++++|+||.+|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~---~~~~---~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA---INDY---EYRVSDYT-LEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC--------CC---EEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc---CCce---EEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence            46999999999999999999999998  9999998742111   2111   00110 11 12466788999999999986


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ....  +..+.+..|+...+.+++.+.+.+.+-+|.+.|
T Consensus        73 ~~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS  109 (311)
T 3m2p_A           73 RGSQ--GKISEFHDNEILTQNLYDACYENNISNIVYAST  109 (311)
T ss_dssp             CCSS--SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCC--ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            5332  445567889999999999999887665555554

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.54  E-value=2.5e-07  Score=89.56  Aligned_cols=140  Identities=21%  Similarity=0.227  Sum_probs=70.8

Q ss_pred             hhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhh--h-------
Q 021932           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--A-------   88 (305)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~--~-------   88 (305)
                      |-|.+|++-.++--+-.+.-+.-.-..+.|||+|||+ |.||..+|..|++ |+  +|+++|+++.+...  .       
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~mkIaVIGl-G~mG~~lA~~La~-G~--~V~~~D~~~~~v~~l~~g~~~i~e   83 (432)
T 3pid_A            8 HHHSSGLVPRGSHMASMTGGQQMGRGSEFMKITISGT-GYVGLSNGVLIAQ-NH--EVVALDIVQAKVDMLNQKISPIVD   83 (432)
T ss_dssp             ---------------------------CCCEEEEECC-SHHHHHHHHHHHT-TS--EEEEECSCHHHHHHHHTTCCSSCC
T ss_pred             ccccCCcccccchhhhccCCcccccccCCCEEEEECc-CHHHHHHHHHHHc-CC--eEEEEecCHHHhhHHhccCCcccc
Confidence            4566776543322122222222223345679999998 9999999999887 87  99999998621110  0       


Q ss_pred             -hhhccc--CCceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-cC
Q 021932           89 -DISHMD--TNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SN  164 (305)
Q Consensus        89 -DL~~~~--~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~-tN  164 (305)
                       ++.+..  ...+++.   ++|+++++++||+||++...+........     +...+.+.++.|.+..|+.+|+.- |.
T Consensus        84 ~~l~~ll~~~~~~l~~---ttd~~ea~~~aDvViiaVPt~~~~~~~~~-----Dl~~V~~v~~~i~~l~~g~iVV~~STv  155 (432)
T 3pid_A           84 KEIQEYLAEKPLNFRA---TTDKHDAYRNADYVIIATPTDYDPKTNYF-----NTSTVEAVIRDVTEINPNAVMIIKSTI  155 (432)
T ss_dssp             HHHHHHHHHSCCCEEE---ESCHHHHHTTCSEEEECCCCEEETTTTEE-----ECHHHHHHHHHHHHHCTTSEEEECSCC
T ss_pred             ccHHHHHhhccCCeEE---EcCHHHHHhCCCEEEEeCCCccccccccc-----cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence             111100  0123443   45788999999999999765432211111     233455555555555577776654 46


Q ss_pred             CCCcc
Q 021932          165 PVNST  169 (305)
Q Consensus       165 Pvd~l  169 (305)
                      |....
T Consensus       156 ~pgtt  160 (432)
T 3pid_A          156 PVGFT  160 (432)
T ss_dssp             CTTHH
T ss_pred             ChHHH
Confidence            66654

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.53  E-value=2.4e-07  Score=90.30  Aligned_cols=120  Identities=18%  Similarity=0.282  Sum_probs=79.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhh-----h-hhhccc---------CCceEEEEecCCCHH
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----A-DISHMD---------TNAVVRGFLGQQQLE  109 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~-----~-DL~~~~---------~~~~v~~~~~t~d~~  109 (305)
                      +.+||+|||+ |.+|..+|..++..|+  +|+++|+++.++..     + .+....         ...+++.   ++|+ 
T Consensus        53 ~i~kVaVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~---t~dl-  125 (460)
T 3k6j_A           53 DVNSVAIIGG-GTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI---TSDF-  125 (460)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE---ESCG-
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE---eCCH-
Confidence            3469999999 9999999999999999  99999998632210     1 111100         0124554   3466 


Q ss_pred             HHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcE
Q 021932          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (305)
Q Consensus       110 ~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kv  188 (305)
                      +++++||+||++..              ++..+.+++.+++.+++ |++++  +||-..+-.   +++ ..... .+.++
T Consensus       126 ~al~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~aIl--asnTSsl~i---~~i-a~~~~-~p~r~  184 (460)
T 3k6j_A          126 HKLSNCDLIVESVI--------------EDMKLKKELFANLENICKSTCIF--GTNTSSLDL---NEI-SSVLR-DPSNL  184 (460)
T ss_dssp             GGCTTCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSSCH---HHH-HTTSS-SGGGE
T ss_pred             HHHccCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCCEE--EecCCChhH---HHH-HHhcc-CCcce
Confidence            58999999999862              25677888888999888 56766  456554432   222 22222 24678


Q ss_pred             EEee
Q 021932          189 LGVT  192 (305)
Q Consensus       189 iG~t  192 (305)
                      +|+.
T Consensus       185 iG~H  188 (460)
T 3k6j_A          185 VGIH  188 (460)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8873

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=98.52  E-value=4.7e-07  Score=83.15  Aligned_cols=110  Identities=22%  Similarity=0.175  Sum_probs=71.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec----CCCHHHHhCCCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~  121 (305)
                      +|||.|+||+|++|++++..|+..|+  +|+++|++.....  ++.+.    .+..+.+    ..++.++++++|+||.+
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~l~~~----~~~~~~~Dl~d~~~~~~~~~~~d~vih~   84 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQIQ--RLAYL----EPECRVAEMLDHAGLERALRGLDGVIFS   84 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCGG--GGGGG----CCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhhh--hhccC----CeEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            46999999999999999999999997  9999998753211  12211    1221111    12355778999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |+..........+.+..|+.....+++.+.+.+...+|.+.|
T Consensus        85 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS  126 (342)
T 2x4g_A           85 AGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGS  126 (342)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECC
T ss_pred             CccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence            986432223455677889999999999999887555554433

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.51  E-value=5.2e-07  Score=78.99  Aligned_cols=114  Identities=17%  Similarity=0.105  Sum_probs=77.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +.+.|||.|+||+|++|+.++..|+..|+  +|+++++++....  ++.+.. ...+....-+.++.++++++|+||.++
T Consensus        18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~--~~~~~~-~~~~~~~Dl~~~~~~~~~~~D~vi~~a   92 (236)
T 3e8x_A           18 YFQGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGP--ELRERG-ASDIVVANLEEDFSHAFASIDAVVFAA   92 (236)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHH--HHHHTT-CSEEEECCTTSCCGGGGTTCSEEEECC
T ss_pred             CcCCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHhCC-CceEEEcccHHHHHHHHcCCCEEEECC
Confidence            34457999999999999999999999998  9999998752211  111111 001111000134568899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |....  ....+.+..|+.....+++.+.+.+...+|.+.|
T Consensus        93 g~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS  131 (236)
T 3e8x_A           93 GSGPH--TGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSS  131 (236)
T ss_dssp             CCCTT--SCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCCCC--CCccccchhhHHHHHHHHHHHHHcCCCEEEEEec
Confidence            86532  3456677889999999999998887555554444

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.51  E-value=2.4e-07  Score=90.83  Aligned_cols=129  Identities=16%  Similarity=0.185  Sum_probs=80.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhh----------hhhcc---cCCceEEEEecCCCHHHH
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA----------DISHM---DTNAVVRGFLGQQQLEDA  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~----------DL~~~---~~~~~v~~~~~t~d~~~a  111 (305)
                      ++|||+|||+ |.||..+|..|+..+...+|+++|+++.+...+          ++.+.   .....++.   ++|++++
T Consensus         8 ~~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~---t~~~~~~   83 (481)
T 2o3j_A            8 KVSKVVCVGA-GYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFF---SSDIPKA   83 (481)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE---ECCHHHH
Confidence            3579999998 999999999999873222999999976211111          11100   00113443   3577788


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEe-cCCCCccHHHHHHHHHH
Q 021932          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLI-SNPVNSTVPIAAEVFKK  179 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~-tNPvd~lt~~~~~~~~~  179 (305)
                      +++||+||++.+.|.+.+.++.+ -..++..+.+.++.|.++.+ +.+|+.. |+|++..-. +.+.+.+
T Consensus        84 ~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~-l~~~l~~  151 (481)
T 2o3j_A           84 IAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAES-IGCILRE  151 (481)
T ss_dssp             HHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHH-HHHHHHH
T ss_pred             hhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHH-HHHHHHH
Confidence            99999999999887654332222 12234556777788887764 5555443 788876533 3344443

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.51  E-value=5.8e-07  Score=87.45  Aligned_cols=108  Identities=19%  Similarity=0.215  Sum_probs=74.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc----------------CCceEEEEecCCCHHH
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TNAVVRGFLGQQQLED  110 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~----------------~~~~v~~~~~t~d~~~  110 (305)
                      |||+|||+ |.||..+|..|+..|+  +|+++|+++.+..  .+....                ...+++.   ++|+++
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~--~V~~~D~~~~~v~--~l~~g~~~i~e~gl~~~l~~~~~~~~l~~---t~d~~e   74 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGA--NVRCIDTDRNKIE--QLNSGTIPIYEPGLEKMIARNVKAGRLRF---GTEIEQ   74 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHTCSCCCSTTHHHHHHHHHHTTSEEE---ESCHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCC--EEEEEECCHHHHH--HHHcCCCcccCCCHHHHHHhhcccCcEEE---ECCHHH
Confidence            79999998 9999999999999998  9999999862111  111100                0123553   357888


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec-CCCCc
Q 021932          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS-NPVNS  168 (305)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t-NPvd~  168 (305)
                      ++++||+||++.+.|.+++.      ..+...+.++++.|.++. ++.+|+..| -|.+.
T Consensus        75 a~~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  128 (450)
T 3gg2_A           75 AVPEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGS  128 (450)
T ss_dssp             HGGGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred             HHhcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcc
Confidence            89999999999987754432      234566777778888776 455555444 45543

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=98.50  E-value=1.1e-06  Score=82.65  Aligned_cols=124  Identities=16%  Similarity=0.016  Sum_probs=83.0

Q ss_pred             cccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec----CCC
Q 021932           32 GLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQ  107 (305)
Q Consensus        32 ~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----t~d  107 (305)
                      .|..+...+.+..++|||.|+||+|++|++++..|+..|+  +|+++|++......  +..    ..+..+.+    ..+
T Consensus        15 ~~~~~~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~----~~v~~~~~Dl~d~~~   86 (379)
T 2c5a_A           15 TYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMT--EDM----FCDEFHLVDLRVMEN   86 (379)
T ss_dssp             CCTTCCCCCSCTTSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSC--GGG----TCSEEEECCTTSHHH
T ss_pred             hHHHHhccccccccCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccchh--hcc----CCceEEECCCCCHHH
Confidence            3444433333555678999999999999999999999997  99999987521111  111    11111111    123


Q ss_pred             HHHHhCCCCEEEEcCCCCCCC---CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          108 LEDALTGMDIVIIPAGVPRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~---g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +.++++++|+||.+|+.....   .....+.+..|+.....+++.+.+.....+|.+.|
T Consensus        87 ~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS  145 (379)
T 2c5a_A           87 CLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS  145 (379)
T ss_dssp             HHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             HHHHhCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEee
Confidence            557789999999999864321   23456677889999999999998876555555444

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.49  E-value=2.2e-07  Score=88.79  Aligned_cols=132  Identities=17%  Similarity=0.276  Sum_probs=67.5

Q ss_pred             cchhhHHHHHHHhhhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCC------CcEEEEE
Q 021932            5 TSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPL------VSVLHLY   78 (305)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~------~~el~L~   78 (305)
                      |++|.+||+..++||++..-.-..        .++++...+|.||+|||| |.-|+++|..|+.+++      ..+|.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw   71 (391)
T 4fgw_A            1 MSAAADRLNLTSGHLNAGRKRSSS--------SVSLKAAEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMW   71 (391)
T ss_dssp             ----------------------------------------CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred             CcchhhHHHHHhhhhccccccccc--------cccccccCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEE
Confidence            678999999999999554322211        122223445679999999 9999999999987653      1368999


Q ss_pred             eCCC-C--chhhhhhh--ccc--------CCceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHH
Q 021932           79 DVVN-T--PGVTADIS--HMD--------TNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKT  145 (305)
Q Consensus        79 D~~~-~--~g~~~DL~--~~~--------~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~  145 (305)
                      .+++ .  +..+..+.  |..        ....++.   ++|+++++++||+||++..                .+.+++
T Consensus        72 ~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~---t~dl~~al~~ad~ii~avP----------------s~~~r~  132 (391)
T 4fgw_A           72 VFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVA---NPDLIDSVKDVDIIVFNIP----------------HQFLPR  132 (391)
T ss_dssp             CCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEE---ESCHHHHHTTCSEEEECSC----------------GGGHHH
T ss_pred             EcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEE---eCCHHHHHhcCCEEEEECC----------------hhhhHH
Confidence            8765 1  11222222  211        1234554   4689999999999999852                234677


Q ss_pred             HHHHHHHhC-CCcEEEEecC
Q 021932          146 LCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       146 i~~~I~~~~-p~aiviv~tN  164 (305)
                      +++++..+- ++..++.++.
T Consensus       133 ~l~~l~~~~~~~~~iv~~~K  152 (391)
T 4fgw_A          133 ICSQLKGHVDSHVRAISCLK  152 (391)
T ss_dssp             HHHHHTTTSCTTCEEEECCC
T ss_pred             HHHHhccccCCCceeEEecc
Confidence            777777665 4666666653

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=2.8e-07  Score=79.95  Aligned_cols=105  Identities=13%  Similarity=0.085  Sum_probs=72.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec----CCCHHHHhCCCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~  121 (305)
                      ++||.|+||+|++|+.++..|+..|+  +|+++++++....  ++.     ..+..+.+    ..+++++++++|+||.+
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   74 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEKIK--IEN-----EHLKVKKADVSSLDEVCEVCKGADAVISA   74 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGGCC--CCC-----TTEEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCcccch--hcc-----CceEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence            46999999999999999999999997  9999998752111  010     12222211    12456788999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +|....    ..+++..|+...+.+++.+.+.+.+.+|.+.|
T Consensus        75 a~~~~~----~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss  112 (227)
T 3dhn_A           75 FNPGWN----NPDIYDETIKVYLTIIDGVKKAGVNRFLMVGG  112 (227)
T ss_dssp             CCC----------CCSHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             CcCCCC----ChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            975421    22356679999999999999887655554443

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.47  E-value=3.7e-07  Score=83.71  Aligned_cols=105  Identities=15%  Similarity=0.162  Sum_probs=68.8

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhh-------h-hhccc-C-------------Cce
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTA-------D-ISHMD-T-------------NAV   98 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~-------D-L~~~~-~-------------~~~   98 (305)
                      |..+++||+|||+ |.+|..+|..|+..|+  +|+++|+++.. ....       + +.... .             ..+
T Consensus        11 ~~~~~~~I~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~   87 (302)
T 1f0y_A           11 KKIIVKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST   87 (302)
T ss_dssp             -CCCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred             ccccCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhc
Confidence            4445579999999 9999999999999998  99999998611 1100       0 00000 0             113


Q ss_pred             EEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 021932           99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (305)
Q Consensus        99 v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~  168 (305)
                      ++.   ++|+++++++||+||++..              .+..+.+++.+.+.++. |+++++  ||-..+
T Consensus        88 i~~---~~~~~~~~~~aD~Vi~avp--------------~~~~~~~~v~~~l~~~~~~~~iv~--s~ts~i  139 (302)
T 1f0y_A           88 IAT---STDAASVVHSTDLVVEAIV--------------ENLKVKNELFKRLDKFAAEHTIFA--SNTSSL  139 (302)
T ss_dssp             EEE---ESCHHHHTTSCSEEEECCC--------------SCHHHHHHHHHHHTTTSCTTCEEE--ECCSSS
T ss_pred             eEE---ecCHHHhhcCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEEE--ECCCCC
Confidence            443   3577778999999999862              13455667778888776 566553  444443

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.46  E-value=8.2e-07  Score=85.84  Aligned_cols=119  Identities=17%  Similarity=0.227  Sum_probs=75.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc------------c----CCceEEEEecCCCHHH
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------------D----TNAVVRGFLGQQQLED  110 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~------------~----~~~~v~~~~~t~d~~~  110 (305)
                      |||+|||+ |.||..+|..|+..|+  +|+++|+++.+..  .+...            .    ...+++.   ++++++
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~--~V~~~d~~~~~~~--~l~~~~~~i~e~~l~~~~~~~~~~g~l~~---t~~~~~   72 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTKID--LINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHhCCCCCcCCCCHHHHHHhhcccCceEE---eCCHHH
Confidence            59999998 9999999999999998  9999999762111  11110            0    0123443   357777


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-C---CcEEEEe-cCCCCccHHHHHHHHHH
Q 021932          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-P---KAIVNLI-SNPVNSTVPIAAEVFKK  179 (305)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p---~aiviv~-tNPvd~lt~~~~~~~~~  179 (305)
                      ++++||+||++.+.|..... .     .+...+++.++.+.++. +   +.+|+.. |+|.......+.+.+.+
T Consensus        73 ~~~~aDvviiaVptp~~~~~-~-----~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNG-D-----LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTS-S-----BCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             HhccCCEEEEEcCCCcccCC-C-----cchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            89999999999987653321 1     13344555556665543 5   6666655 78887633333444443

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=98.45  E-value=8e-07  Score=82.76  Aligned_cols=115  Identities=15%  Similarity=0.108  Sum_probs=78.5

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHh--CCCCcEEEEEeCCCCc-----------hhhhhhhcccCCceEEEEecC---
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTP-----------GVTADISHMDTNAVVRGFLGQ---  105 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~--~~~~~el~L~D~~~~~-----------g~~~DL~~~~~~~~v~~~~~t---  105 (305)
                      ++.+++||.|+||+|++|++++..|+.  .|.  +|+++|+....           +....+.    ...+..+.+.   
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d   79 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLI----GFKGEVIAADINN   79 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGT----TCCSEEEECCTTC
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhcc----ccCceEEECCCCC
Confidence            445567999999999999999999999  788  99999985420           1111111    1112222111   


Q ss_pred             -CCHHHH-hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          106 -QQLEDA-LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       106 -~d~~~a-l~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                       .+++++ ..++|+||.+||..........+.+..|+.....+++.+.+.+.. +|.+.|
T Consensus        80 ~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS  138 (362)
T 3sxp_A           80 PLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASS  138 (362)
T ss_dssp             HHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred             HHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCc
Confidence             134444 689999999998654333456678889999999999999988755 544444

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.42  E-value=1.5e-06  Score=85.12  Aligned_cols=115  Identities=16%  Similarity=0.126  Sum_probs=75.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCC--chhhhhhhccc--C----------------CceEEEEe
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGVTADISHMD--T----------------NAVVRGFL  103 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~--~g~~~DL~~~~--~----------------~~~v~~~~  103 (305)
                      +.|||+|||+ |.||..+|..|+.. |+. +|+++|+++.  ++.+..|....  .                ..+++.  
T Consensus        17 ~~mkIaVIGl-G~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~--   92 (478)
T 3g79_A           17 PIKKIGVLGM-GYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC--   92 (478)
T ss_dssp             SCCEEEEECC-STTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE--
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE--
Confidence            3579999998 99999999999999 874 8999999863  22333333311  0                123543  


Q ss_pred             cCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCcc
Q 021932          104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNST  169 (305)
Q Consensus       104 ~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~-tNPvd~l  169 (305)
                       ++| .+++++||+||++.+.|.....++    ..++..+....+.|.++. |..+|+.- |-|....
T Consensus        93 -ttd-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt  154 (478)
T 3g79_A           93 -TPD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTT  154 (478)
T ss_dssp             -ESC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTT
T ss_pred             -eCc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHH
Confidence             346 589999999999998876543210    123455666667777766 45555444 4555543

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=98.42  E-value=2.5e-06  Score=78.35  Aligned_cols=119  Identities=15%  Similarity=0.085  Sum_probs=74.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhhhhcccC-CceEEEEe----cCCCHHHHhCCCC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDT-NAVVRGFL----GQQQLEDALTGMD  116 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~DL~~~~~-~~~v~~~~----~t~d~~~al~~aD  116 (305)
                      ..+.+||.|+||+|++|++++..|+..|+  +|+.++++... ....++..... ...+..+.    ...+++++++++|
T Consensus         2 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (337)
T 2c29_D            2 GSQSETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCT   79 (337)
T ss_dssp             ----CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCS
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCC
Confidence            34567999999999999999999999998  88888776521 11111111100 01233221    1234567889999


Q ss_pred             EEEEcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          117 IVIIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       117 iVIi~ag~~~~~g~~-r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +||.+|+.......+ ..+++..|+.....+++.+.+...-..|+++|
T Consensus        80 ~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~S  127 (337)
T 2c29_D           80 GVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTS  127 (337)
T ss_dssp             EEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             EEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEee
Confidence            999999754211122 23467889999999999998876223344443

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.42  E-value=7.5e-07  Score=87.46  Aligned_cols=119  Identities=22%  Similarity=0.347  Sum_probs=76.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhh----hhcc---c---------CCceEEEEecCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTAD----ISHM---D---------TNAVVRGFLGQQ  106 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~D----L~~~---~---------~~~~v~~~~~t~  106 (305)
                      +.+||+|||+ |.+|..+|..|+..|+  +|+++|+++.  ......    +...   .         ...+++.   ++
T Consensus         4 ~~~kVgVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~   77 (483)
T 3mog_A            4 NVQTVAVIGS-GTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP---VT   77 (483)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE---EC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE---eC
Confidence            3469999999 9999999999999998  9999999861  111000    1100   0         0123443   34


Q ss_pred             CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 021932          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (305)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~  185 (305)
                      ++ +++++||+||++..              ++..+.+++.+++.+++ |++++  +||-..+-..   + +..... .+
T Consensus        78 ~~-~~~~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~~Il--asntSti~i~---~-ia~~~~-~p  135 (483)
T 3mog_A           78 DI-HALAAADLVIEAAS--------------ERLEVKKALFAQLAEVCPPQTLL--TTNTSSISIT---A-IAAEIK-NP  135 (483)
T ss_dssp             CG-GGGGGCSEEEECCC--------------CCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHH---H-HTTTSS-SG
T ss_pred             CH-HHhcCCCEEEEcCC--------------CcHHHHHHHHHHHHHhhccCcEE--EecCCCCCHH---H-HHHHcc-Cc
Confidence            66 67999999999862              24567788888898887 56655  4555554322   1 122222 34


Q ss_pred             CcEEEe
Q 021932          186 KRLLGV  191 (305)
Q Consensus       186 ~kviG~  191 (305)
                      .+++|+
T Consensus       136 ~~~ig~  141 (483)
T 3mog_A          136 ERVAGL  141 (483)
T ss_dssp             GGEEEE
T ss_pred             cceEEe
Confidence            577776

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=98.41  E-value=2.5e-06  Score=78.27  Aligned_cols=112  Identities=15%  Similarity=0.112  Sum_probs=71.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc----hhhhhhhcccCCceEEEEec----CCCHHHHhCCCCE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTNAVVRGFLG----QQQLEDALTGMDI  117 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~----g~~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDi  117 (305)
                      .+||.|+||+|++|++++..|+..|+  +|+.++++...    ....++..   ...+..+.+    ..++.++++++|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~D~   83 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQE---LGDLKIFRADLTDELSFEAPIAGCDF   83 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGG---GSCEEEEECCTTTSSSSHHHHTTCSE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCC---CCcEEEEecCCCChHHHHHHHcCCCE
Confidence            56999999999999999999999998  88887765421    11112221   112332211    2346678899999


Q ss_pred             EEEcCCCCCCCCCch-hhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          118 VIIPAGVPRKPGMTR-DDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       118 VIi~ag~~~~~g~~r-~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                      ||.+|+.......+. .+++..|+.....+++.+.+.. ... ||++|
T Consensus        84 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r-~V~~S  130 (338)
T 2rh8_A           84 VFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKR-VILTS  130 (338)
T ss_dssp             EEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCE-EEEEC
T ss_pred             EEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCE-EEEEe
Confidence            999997542111111 2367889999999999998875 343 44444

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=98.41  E-value=2.1e-06  Score=77.77  Aligned_cols=160  Identities=19%  Similarity=0.145  Sum_probs=94.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec---CCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG---QQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~---t~d~~~al~~aDiVIi~ag  123 (305)
                      |||.|+||+|++|++++..|+..|+  +|+++|++......  ..+    ..+..+.+   ..++.+++++ |+||.+|+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~----~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~   71 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRRE--FVN----PSAELHVRDLKDYSWGAGIKG-DVVFHFAA   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCGG--GSC----TTSEEECCCTTSTTTTTTCCC-SEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCchh--hcC----CCceEEECccccHHHHhhcCC-CEEEECCC
Confidence            5899999999999999999999998  99999986521110  111    11111110   1114456666 99999998


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-----C-ccHHHHHHHHHHhCCCCCCcEEEeeehh
Q 021932          124 VPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-----N-STVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (305)
Q Consensus       124 ~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv-----d-~lt~~~~~~~~~~s~~p~~kviG~t~Ld  195 (305)
                      .+...  ..+....+..|+.....+++.+.+.+...+|.+.|.-+     + .+.        +....++....|.+-..
T Consensus        72 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~--------e~~~~~p~~~Y~~sK~~  143 (312)
T 3ko8_A           72 NPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTP--------EEEPYKPISVYGAAKAA  143 (312)
T ss_dssp             SCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBC--------TTSCCCCCSHHHHHHHH
T ss_pred             CCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCC--------CCCCCCCCChHHHHHHH
Confidence            64221  23345677889999999999999887655555554110     0 000        00111122222222222


Q ss_pred             hHHHHHHHHHHhCCCCccee-EEEEcccC
Q 021932          196 VVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (305)
Q Consensus       196 s~R~~~~la~~l~v~~~~V~-~~vlG~hg  223 (305)
                      ..++-..+++..+++..-++ +.+.|...
T Consensus       144 ~e~~~~~~~~~~g~~~~~lrp~~v~g~~~  172 (312)
T 3ko8_A          144 GEVMCATYARLFGVRCLAVRYANVVGPRL  172 (312)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHhCCCEEEEeeccccCcCC
Confidence            33444455666787776676 57888653

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.41  E-value=2.2e-06  Score=83.12  Aligned_cols=119  Identities=18%  Similarity=0.190  Sum_probs=78.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC------chh-------hhhhh-cccCCceEEEEecCCCHHH
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGV-------TADIS-HMDTNAVVRGFLGQQQLED  110 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~------~g~-------~~DL~-~~~~~~~v~~~~~t~d~~~  110 (305)
                      ++.+|+|||. |+||..+|..|+..|+  +|+.+|+++.      .|.       ..|+. +.....+++.   ++|.++
T Consensus        20 ~m~~IaViGl-GYVGLp~A~~~A~~G~--~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~---tt~~~~   93 (444)
T 3vtf_A           20 HMASLSVLGL-GYVGVVHAVGFALLGH--RVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSF---AESAEE   93 (444)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---CSSHHH
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeE---EcCHHH
Confidence            4569999998 9999999999999999  9999999861      111       01111 1111345664   457788


Q ss_pred             HhCCCCEEEEcCCCCCCCCC-chhhHHHhhHHHHHHHHHHHHHhCCCcEEEE-ecCCCCccHHH
Q 021932          111 ALTGMDIVIIPAGVPRKPGM-TRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVNSTVPI  172 (305)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~-~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv-~tNPvd~lt~~  172 (305)
                      ++++||++|++.++|.++.. ..+.++   ....+.+++.++..++..+|++ .|-|+...-.+
T Consensus        94 ai~~ad~~~I~VpTP~~~d~~~Dl~~v---~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~  154 (444)
T 3vtf_A           94 AVAATDATFIAVGTPPAPDGSADLRYV---EAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGL  154 (444)
T ss_dssp             HHHTSSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTH
T ss_pred             HHhcCCceEEEecCCCCCCCCCCcHHH---HHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHH
Confidence            99999999999999865532 222222   2345566666665555445444 46787764433

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=98.40  E-value=5.4e-07  Score=83.24  Aligned_cols=169  Identities=15%  Similarity=0.066  Sum_probs=100.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccC---CceEEEEecC----CCHHHHhCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT---NAVVRGFLGQ----QQLEDALTGM  115 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~---~~~v~~~~~t----~d~~~al~~a  115 (305)
                      +++||.|+||+|++|++++..|+..|+  +|+.+|+...  .....++.....   ...+..+.+.    .++.++++++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            456999999999999999999999998  9999998652  112222222100   0223332211    2356778899


Q ss_pred             CEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-----C-ccHHHHHHHHHHhCCCCCCc
Q 021932          116 DIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-----N-STVPIAAEVFKKVGTYDPKR  187 (305)
Q Consensus       116 DiVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv-----d-~lt~~~~~~~~~~s~~p~~k  187 (305)
                      |+||.+|+.....  ..+..+.+..|+.....+++.+.+.+.+.+|.+.|--+     + .+.        +..-..+..
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~--------E~~~~~p~~  173 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKV--------EENIGNPLS  173 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBC--------TTCCCCCCS
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCc--------cCCCCCCCC
Confidence            9999999853211  12234567889999999999999887665555544111     0 000        000001111


Q ss_pred             EEEeeehhhHHHHHHHHHHhCCCCccee-EEEEcccC
Q 021932          188 LLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHA  223 (305)
Q Consensus       188 viG~t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~hg  223 (305)
                      ..|.+-+...++-..+++..|++..-++ +.|+|...
T Consensus       174 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~  210 (351)
T 3ruf_A          174 PYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQ  210 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTC
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCC
Confidence            1222222333444445566688777776 57888654

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=98.39  E-value=1.1e-05  Score=74.06  Aligned_cols=115  Identities=18%  Similarity=0.199  Sum_probs=74.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC---C---CCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC----CCHHHHhCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKIN---P---LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTGMD  116 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~---~---~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t----~d~~~al~~aD  116 (305)
                      |||.|+||+|++|++++..|+..   +   +  +|+++|+....+....+........+..+.+.    .++.+++.++|
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   78 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD--EVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVD   78 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS--EEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCC
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCce--EEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCC
Confidence            58999999999999999999885   5   5  99999985411111111111101223332211    13456678999


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       117 iVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +||.+||.....  ..+..+.+..|+.....+++.+.+.....+|.+.|
T Consensus        79 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS  127 (337)
T 1r6d_A           79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVST  127 (337)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence            999999854210  01234567889999999999999876544554444

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.38  E-value=9.5e-07  Score=81.32  Aligned_cols=121  Identities=21%  Similarity=0.229  Sum_probs=76.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhh-hhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTAD-ISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~D-L~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      ..-+||+|||+ |.+|+.+|..|+ .|+  +|+++|+++. ...+.+ +.+.. ...++.   +++++ ++++||+||.+
T Consensus        10 ~~~~~V~vIG~-G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l~~~~-~~~i~~---~~~~~-~~~~aDlViea   80 (293)
T 1zej_A           10 HHHMKVFVIGA-GLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQIPEEL-LSKIEF---TTTLE-KVKDCDIVMEA   80 (293)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHSCGGG-GGGEEE---ESSCT-TGGGCSEEEEC
T ss_pred             cCCCeEEEEee-CHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHHHHHH-hCCeEE---eCCHH-HHcCCCEEEEc
Confidence            34579999999 999999999999 999  9999999761 111121 21111 124543   24564 48999999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehh
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLD  195 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Ld  195 (305)
                      ..              ++..+.+.+..++... |++++.  ||-..+-...    +..... .+.|++|+..+|
T Consensus        81 vp--------------e~~~vk~~l~~~l~~~-~~~Ila--sntSti~~~~----~a~~~~-~~~r~~G~Hf~~  132 (293)
T 1zej_A           81 VF--------------EDLNTKVEVLREVERL-TNAPLC--SNTSVISVDD----IAERLD-SPSRFLGVHWMN  132 (293)
T ss_dssp             CC--------------SCHHHHHHHHHHHHTT-CCSCEE--ECCSSSCHHH----HHTTSS-CGGGEEEEEECS
T ss_pred             Cc--------------CCHHHHHHHHHHHhcC-CCCEEE--EECCCcCHHH----HHHHhh-cccceEeEEecC
Confidence            62              2456666777778888 888764  5554432211    122222 245788886544

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.38  E-value=1.4e-06  Score=80.87  Aligned_cols=135  Identities=14%  Similarity=0.176  Sum_probs=74.6

Q ss_pred             hhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCCchhhhhhhcccC
Q 021932           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDT   95 (305)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~--~el~L~D~~~~~g~~~DL~~~~~   95 (305)
                      |-|.+|+.|--+.           ...++|||+|||+ |.+|..++..|...|..  .+|.++|+++.......+.... 
T Consensus         5 ~~~~~~~~~~~~~-----------~~~~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G-   71 (322)
T 2izz_A            5 HHHSSGVDLGTEN-----------LYFQSMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG-   71 (322)
T ss_dssp             ----------------------------CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT-
T ss_pred             cccccccccCCch-----------hccCCCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC-
Confidence            5567777773333           2233468999998 99999999999988831  3899999875311222232211 


Q ss_pred             CceEEEEecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHH
Q 021932           96 NAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAA  174 (305)
Q Consensus        96 ~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~  174 (305)
                         ++.   +++..++++++|+||++.. +               ..+.++++.+.... |+.+|+.++|.+..- . +.
T Consensus        72 ---~~~---~~~~~e~~~~aDvVilav~-~---------------~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~-~-l~  127 (322)
T 2izz_A           72 ---VKL---TPHNKETVQHSDVLFLAVK-P---------------HIIPFILDEIGADIEDRHIVVSCAAGVTIS-S-IE  127 (322)
T ss_dssp             ---CEE---ESCHHHHHHHCSEEEECSC-G---------------GGHHHHHHHHGGGCCTTCEEEECCTTCCHH-H-HH
T ss_pred             ---CEE---eCChHHHhccCCEEEEEeC-H---------------HHHHHHHHHHHhhcCCCCEEEEeCCCCCHH-H-HH
Confidence               222   1356688899999999863 1               12445556666654 678888888887642 1 23


Q ss_pred             HHHHHhCCCCCCcEEEe
Q 021932          175 EVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       175 ~~~~~~s~~p~~kviG~  191 (305)
                      +.+.+  .++..++++.
T Consensus       128 ~~l~~--~~~~~~vv~~  142 (322)
T 2izz_A          128 KKLSA--FRPAPRVIRC  142 (322)
T ss_dssp             HHHHT--TSSCCEEEEE
T ss_pred             HHHhh--cCCCCeEEEE
Confidence            33332  1344566643

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.38  E-value=1.6e-06  Score=79.46  Aligned_cols=117  Identities=17%  Similarity=0.016  Sum_probs=74.5

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc---hhhhhhhcccCCceEEEEecC-C---CHHHHhCC
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTNAVVRGFLGQ-Q---QLEDALTG  114 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~---g~~~DL~~~~~~~~v~~~~~t-~---d~~~al~~  114 (305)
                      ++.+.+||.|+||+|++|+.++..|+..|+  +|+++|++...   ....++..   ...+..+.+. +   ++.+++++
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~   84 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGI---EGDIQYEDGDMADACSVQRAVIK   84 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTC---GGGEEEEECCTTCHHHHHHHHHH
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCccccccchhhccc---cCceEEEECCCCCHHHHHHHHHH
Confidence            456678999999999999999999999997  99999986521   11112211   1223322211 1   24455665


Q ss_pred             --CCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          115 --MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       115 --aDiVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                        .|+||.+||.....  ..+..+.+..|+.....+++.+.+.+....++.+|
T Consensus        85 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S  137 (335)
T 1rpn_A           85 AQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAS  137 (335)
T ss_dssp             HCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             cCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence              59999999864311  12345677889999999999999887423444443

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=98.36  E-value=2.2e-06  Score=78.54  Aligned_cols=118  Identities=16%  Similarity=0.102  Sum_probs=74.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-C---CHHHHhCCCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-Q---QLEDALTGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-~---d~~~al~~aDiVIi~  121 (305)
                      .|||.|+||+|++|++++..|+..|...+|+++|+....+....+.+......+..+.+. +   ++++++.++|+||.+
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   82 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHL   82 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEEC
Confidence            368999999999999999999887622299999986411111111111101233332211 2   244667899999999


Q ss_pred             CCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          122 AGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       122 ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ||.....  ..+..+.+..|+.....+++.+.+......++.+|
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  126 (336)
T 2hun_A           83 AAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVS  126 (336)
T ss_dssp             CCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            9864210  11234577889999999999999886434444444

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=98.36  E-value=2.4e-06  Score=73.27  Aligned_cols=98  Identities=11%  Similarity=0.109  Sum_probs=68.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec---CCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG---QQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~---t~d~~~al~~aDiVIi~ag  123 (305)
                      |||.|+||+|++|+.++..|+..|+  +|+++++++....  ++.     ..+..+.+   ..+. ++++++|+||.++|
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~--~~~-----~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag   70 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKIT--QTH-----KDINILQKDIFDLTL-SDLSDQNVVVDAYG   70 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHHH--HHC-----SSSEEEECCGGGCCH-HHHTTCSEEEECCC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhhh--hcc-----CCCeEEeccccChhh-hhhcCCCEEEECCc
Confidence            6899999999999999999999997  9999999762211  111     11111111   1122 68899999999998


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv  161 (305)
                      .+...       ...|+...+.+++.+++.+...+|++
T Consensus        71 ~~~~~-------~~~~~~~~~~l~~a~~~~~~~~~v~~  101 (221)
T 3ew7_A           71 ISPDE-------AEKHVTSLDHLISVLNGTVSPRLLVV  101 (221)
T ss_dssp             SSTTT-------TTSHHHHHHHHHHHHCSCCSSEEEEE
T ss_pred             CCccc-------cchHHHHHHHHHHHHHhcCCceEEEE
Confidence            75321       23488889999999987754444433

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.36  E-value=1.4e-06  Score=83.45  Aligned_cols=112  Identities=17%  Similarity=0.259  Sum_probs=73.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc--------------CCceEEEEecCCCHHHHh
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------------TNAVVRGFLGQQQLEDAL  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~--------------~~~~v~~~~~t~d~~~al  112 (305)
                      |||+|||+ |.||..+|..|+. |+  +|+++|+++.+.  ..+....              ...+++.   ++++++++
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G~--~V~~~d~~~~~~--~~l~~~~~~i~e~~l~~~~~~~~~~l~~---t~~~~~~~   71 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-QN--EVTIVDILPSKV--DKINNGLSPIQDEYIEYYLKSKQLSIKA---TLDSKAAY   71 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSCHHHH--HHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-CC--EEEEEECCHHHH--HHHHcCCCCcCCCCHHHHHHhccCcEEE---eCCHHHHh
Confidence            59999999 9999999999988 86  999999975211  1111110              0113343   34677889


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE-ecCCCCccHHH
Q 021932          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVNSTVPI  172 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv-~tNPvd~lt~~  172 (305)
                      ++||+||++.+.+...+..+.|     ...+.++++.+.+..|+.+|+. .|||.+..-.+
T Consensus        72 ~~aDvviiavpt~~~~~~~~~d-----l~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l  127 (402)
T 1dlj_A           72 KEAELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSVNSHATLIIKSTIPIGFITEM  127 (402)
T ss_dssp             HHCSEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHH
T ss_pred             cCCCEEEEecCCCcccCCCCcc-----HHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHH
Confidence            9999999998766322222222     2345555555655457777776 68999876443

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=98.35  E-value=5.1e-06  Score=75.90  Aligned_cols=116  Identities=14%  Similarity=-0.002  Sum_probs=76.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh-hhh-hhcccCCceEEEE-ec----CCCHHHHhCCCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TAD-ISHMDTNAVVRGF-LG----QQQLEDALTGMD  116 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~-~~D-L~~~~~~~~v~~~-~~----t~d~~~al~~aD  116 (305)
                      .+.++|.|+||+|++|++++..|+..|+  +|+++|++..... ..+ +.... ...+..+ .+    ..++.++++++|
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d   85 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAA   85 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCC
Confidence            3456999999999999999999999998  9999998652111 111 11100 1123322 11    123456677899


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       117 iVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +||.+|+.... +.+..+.+..|+.....+++.+.+......++.+|
T Consensus        86 ~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~S  131 (342)
T 1y1p_A           86 GVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS  131 (342)
T ss_dssp             EEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred             EEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence            99999986532 23456678899999999999988533223444444

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=98.35  E-value=3.7e-06  Score=77.97  Aligned_cols=112  Identities=12%  Similarity=0.099  Sum_probs=74.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC-----CCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-----GMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~-----~aDiVI  119 (305)
                      .+||.|+||+|++|++++..|+..| .  +|+++|++.......++........+.   ....++++++     ++|+||
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~d~Vi  120 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMD---KEDFLIQIMAGEEFGDVEAIF  120 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCC--CEEEEECCSSGGGGGGTTTSCCSEEEE---HHHHHHHHHTTCCCSSCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCc--EEEEEecCCCcchhhcccCceEeeecC---cHHHHHHHHhhcccCCCCEEE
Confidence            4689999999999999999999988 6  899999865221111222111011111   1123445565     599999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .+|+.......+..+.+..|+.....+++.+.+.+. .+|.+.|
T Consensus       121 h~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS  163 (357)
T 2x6t_A          121 HEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASS  163 (357)
T ss_dssp             ECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEE
T ss_pred             ECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcc
Confidence            999865433344567788899999999999998776 4554444

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=98.34  E-value=2.9e-06  Score=78.15  Aligned_cols=113  Identities=18%  Similarity=0.130  Sum_probs=74.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC----CCHHHHhCCCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~--~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t----~d~~~al~~aDiVI  119 (305)
                      ++||.|+||+|++|++++..|+..  |+  +|+++|++...+....+.... ...+..+.+.    .++.++++++|+||
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   80 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDV--HVTVLDKLTYAGNKANLEAIL-GDRVELVVGDIADAELVDKLAAKADAIV   80 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTC--EEEEEECCCTTCCGGGTGGGC-SSSEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCC--EEEEEeCCCCCCChhHHhhhc-cCCeEEEECCCCCHHHHHHHhhcCCEEE
Confidence            469999999999999999999887  66  999999864211111111111 1223332211    23556789999999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       120 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .+||.....  ..+..+.+..|+.....+++.+.+.+.  .++.+|
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~S  124 (348)
T 1oc2_A           81 HYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVS  124 (348)
T ss_dssp             ECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEec
Confidence            999864210  012345678899999999999998864  444443

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.34  E-value=2.5e-06  Score=83.22  Aligned_cols=120  Identities=18%  Similarity=0.238  Sum_probs=77.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--C-chhh--hh-h----hcc-----cC-CceEEEEecCCCH
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVT--AD-I----SHM-----DT-NAVVRGFLGQQQL  108 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~-~g~~--~D-L----~~~-----~~-~~~v~~~~~t~d~  108 (305)
                      +.+||+|||+ |.+|..+|..|+..|+  +|+++|+++  + .+..  .+ +    ...     .. ....+.   ++++
T Consensus        36 ~~~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i---~~~~  109 (463)
T 1zcj_A           36 PVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSST  109 (463)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE---ESCG
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh---cCCH
Confidence            3469999999 9999999999999998  999999976  1 1110  00 0    000     00 111232   3466


Q ss_pred             HHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCc
Q 021932          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKR  187 (305)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~k  187 (305)
                       +++++||+||++..              ++..+.+++.+++.++. |+++|+  ||...+-+..+    ...... +.+
T Consensus       110 -~~~~~aDlVIeaVp--------------e~~~~k~~v~~~l~~~~~~~~ii~--snTs~~~~~~l----a~~~~~-~~~  167 (463)
T 1zcj_A          110 -KELSTVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGAFLC--TNTSALNVDDI----ASSTDR-PQL  167 (463)
T ss_dssp             -GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEEE--ECCSSSCHHHH----HTTSSC-GGG
T ss_pred             -HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEEE--eCCCCcCHHHH----HHHhcC-Ccc
Confidence             68999999999962              24566777888888887 566653  57766543222    222222 467


Q ss_pred             EEEee
Q 021932          188 LLGVT  192 (305)
Q Consensus       188 viG~t  192 (305)
                      ++|+.
T Consensus       168 ~ig~h  172 (463)
T 1zcj_A          168 VIGTH  172 (463)
T ss_dssp             EEEEE
T ss_pred             eEEee
Confidence            77763

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.34  E-value=1e-06  Score=86.33  Aligned_cols=107  Identities=14%  Similarity=0.147  Sum_probs=72.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhh----------hhh----cccCCceEEEEecCCCHHH
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA----------DIS----HMDTNAVVRGFLGQQQLED  110 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~----------DL~----~~~~~~~v~~~~~t~d~~~  110 (305)
                      -.|||+|||+ |.||..+|..|+..|+  +|+++|+++.+-..+          ++.    ......+++.   ++|+++
T Consensus         7 ~~~~I~VIG~-G~vG~~lA~~la~~G~--~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~---ttd~~~   80 (478)
T 2y0c_A            7 GSMNLTIIGS-GSVGLVTGACLADIGH--DVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF---STDIEA   80 (478)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ECCHHH
T ss_pred             CCceEEEECc-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE---ECCHHH
Confidence            4579999998 9999999999999998  999999976211100          000    0000123453   357778


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                      ++++||+||++.+.|.+...      .-+...++++++.|.++. |+.+|++.|
T Consensus        81 a~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~~S  128 (478)
T 2y0c_A           81 AVAHGDVQFIAVGTPPDEDG------SADLQYVLAAARNIGRYMTGFKVIVDKS  128 (478)
T ss_dssp             HHHHCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             HhhcCCEEEEEeCCCcccCC------CccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            89999999999987754322      124566777777887776 556655443

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=98.34  E-value=2.1e-06  Score=78.80  Aligned_cols=113  Identities=19%  Similarity=0.129  Sum_probs=75.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEecC----CCHHHHhCC--CC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLGQ----QQLEDALTG--MD  116 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~~t----~d~~~al~~--aD  116 (305)
                      ||||.|+||+|++|++++..|+..|+  +|+++|++..   .....++...   .++..+.+.    .++++++++  +|
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~d   75 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSL---GNFEFVHGDIRNKNDVTRLITKYMPD   75 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccC---CceEEEEcCCCCHHHHHHHHhccCCC
Confidence            36899999999999999999999998  9999997531   1112223221   122222111    234566777  99


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       117 iVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +||.+||.....  ..+..+.+..|+.....+++.+.+...++.++.+|
T Consensus        76 ~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~S  124 (347)
T 1orr_A           76 SCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  124 (347)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence            999999864210  01334567889999999999999988654454444

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=98.34  E-value=1.2e-06  Score=81.68  Aligned_cols=110  Identities=16%  Similarity=0.171  Sum_probs=74.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-----CCHHHHhCCCCEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-----QQLEDALTGMDIV  118 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-----~d~~~al~~aDiV  118 (305)
                      +++||.|+||+|++|++++..|+.. |+  +|+.+|++....  .++..   ...++.+.+.     ..+.++++++|+|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~---~~~v~~~~~Dl~~d~~~~~~~~~~~d~V   95 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDRL--GDLVK---HERMHFFEGDITINKEWVEYHVKKCDVI   95 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTTT--GGGGG---STTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhhh--hhhcc---CCCeEEEeCccCCCHHHHHHHhccCCEE
Confidence            4579999999999999999999887 77  999999865211  11111   1123322111     1345677899999


Q ss_pred             EEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          119 IIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       119 Ii~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |.+|+......  .+..+.+..|+.....+++.+.+.+ .. ++.+|
T Consensus        96 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~-~v~~S  140 (372)
T 3slg_A           96 LPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KH-LVFPS  140 (372)
T ss_dssp             EECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CE-EEEEC
T ss_pred             EEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-Cc-EEEeC
Confidence            99998643211  1334567789888999999999888 44 44444

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.32  E-value=1.2e-06  Score=90.07  Aligned_cols=119  Identities=19%  Similarity=0.324  Sum_probs=77.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhh--hhh----h-cc--------cCCceEEEEecCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVT--ADI----S-HM--------DTNAVVRGFLGQQQ  107 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~--~DL----~-~~--------~~~~~v~~~~~t~d  107 (305)
                      .+||+|||+ |.+|+.+|..++..|+  +|+++|+++.   .+..  .+.    . ..        ....+++.   ++|
T Consensus       312 ~~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~d  385 (725)
T 2wtb_A          312 IKKVAIIGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKG---SLD  385 (725)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEE---ESS
T ss_pred             CcEEEEEcC-CHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEE---eCC
Confidence            468999999 9999999999999998  9999999861   1110  110    0 00        01224553   346


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCC
Q 021932          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPK  186 (305)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~  186 (305)
                      + +++++||+||++..              ++..+.+++..++.+++ |++++  +||...+-..   + +..... .++
T Consensus       386 ~-~~~~~aDlVIeaVp--------------e~~~vk~~v~~~l~~~~~~~~Il--asntStl~i~---~-la~~~~-~p~  443 (725)
T 2wtb_A          386 Y-ESFRDVDMVIEAVI--------------ENISLKQQIFADLEKYCPQHCIL--ASNTSTIDLN---K-IGERTK-SQD  443 (725)
T ss_dssp             S-GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHH---H-HTTTCS-CTT
T ss_pred             H-HHHCCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EeCCCCCCHH---H-HHHHhc-CCC
Confidence            6 78999999999862              24667778888888888 45654  6777655321   2 122222 235


Q ss_pred             cEEEee
Q 021932          187 RLLGVT  192 (305)
Q Consensus       187 kviG~t  192 (305)
                      +++|+.
T Consensus       444 ~~iG~h  449 (725)
T 2wtb_A          444 RIVGAH  449 (725)
T ss_dssp             TEEEEE
T ss_pred             CEEEec
Confidence            777763

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=98.30  E-value=1.2e-06  Score=75.64  Aligned_cols=101  Identities=18%  Similarity=0.212  Sum_probs=70.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-----CCCHHHHhCCCCEEEEc
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-----QQQLEDALTGMDIVIIP  121 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-----t~d~~~al~~aDiVIi~  121 (305)
                      |||.|+||+|++|+.++..|+..|+  +|++++++.....  ++      ..+..+.+     ..++.++++++|+||.+
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~--~~------~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQVP--QY------NNVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGGSC--CC------TTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccchh--hc------CCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            5899999999999999999999997  9999998752111  01      11222111     12356778999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +|....      +.+..|+.....+++.+.+.+..-+|.+.|
T Consensus        71 ag~~~~------~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS  106 (219)
T 3dqp_A           71 SGSGGK------SLLKVDLYGAVKLMQAAEKAEVKRFILLST  106 (219)
T ss_dssp             CCCTTS------SCCCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CcCCCC------CcEeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence            986542      234567888888898888876554444444

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=98.29  E-value=3.3e-06  Score=77.30  Aligned_cols=115  Identities=14%  Similarity=-0.024  Sum_probs=74.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-C---CHHHHhCC--CCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-Q---QLEDALTG--MDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-~---d~~~al~~--aDiVI  119 (305)
                      .+||.|+||+|++|++++..|+..|+  +|+++|++........+........+..+.+. +   ++.+++++  .|+||
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            35899999999999999999999998  99999987622111112211101223322111 1   23455665  59999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Q 021932          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (305)
Q Consensus       120 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~  162 (305)
                      .+||.....  ..+..+.+..|+.....+++.+.+.+....++.+
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~  125 (345)
T 2z1m_A           81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQA  125 (345)
T ss_dssp             ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEE
Confidence            999864211  1234566788999999999999887642344444

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.29  E-value=9.1e-07  Score=77.57  Aligned_cols=98  Identities=17%  Similarity=0.143  Sum_probs=64.7

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L-~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      ...+++||+|||+ |.+|..++..|...|+  +|.+ +|+++....  ++.... .....    .++ .++++++|+||+
T Consensus        19 ~~m~mmkI~IIG~-G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~--~l~~~~-g~~~~----~~~-~~~~~~aDvVil   87 (220)
T 4huj_A           19 YFQSMTTYAIIGA-GAIGSALAERFTAAQI--PAIIANSRGPASLS--SVTDRF-GASVK----AVE-LKDALQADVVIL   87 (220)
T ss_dssp             TGGGSCCEEEEEC-HHHHHHHHHHHHHTTC--CEEEECTTCGGGGH--HHHHHH-TTTEE----ECC-HHHHTTSSEEEE
T ss_pred             hhhcCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCCHHHHH--HHHHHh-CCCcc----cCh-HHHHhcCCEEEE
Confidence            3445679999998 9999999999999988  8888 898762221  111110 11111    123 467899999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                      +..    +            ..+.++++.+.. .++.+++-++||..
T Consensus        88 avp----~------------~~~~~v~~~l~~-~~~~ivi~~~~g~~  117 (220)
T 4huj_A           88 AVP----Y------------DSIADIVTQVSD-WGGQIVVDASNAID  117 (220)
T ss_dssp             ESC----G------------GGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred             eCC----h------------HHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence            862    1            123445555554 45678888899984

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=98.29  E-value=6.9e-06  Score=75.48  Aligned_cols=113  Identities=18%  Similarity=0.156  Sum_probs=75.8

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hh-hhhhhcccCCceEEEEecC-C---CHHHHhC--
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GV-TADISHMDTNAVVRGFLGQ-Q---QLEDALT--  113 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~-~~DL~~~~~~~~v~~~~~t-~---d~~~al~--  113 (305)
                      .+.+.|+|.|+||+|++|++++..|+..|+  +|+++|++... .. ..++      ..+..+.+. +   ++.++++  
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~l------~~v~~~~~Dl~d~~~~~~~~~~~   87 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKREVLPPV------AGLSVIEGSVTDAGLLERAFDSF   87 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCGGGSCSC------TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccchhhhhcc------CCceEEEeeCCCHHHHHHHHhhc
Confidence            445557999999999999999999999887  99999986421 11 0111      122222111 1   3456677  


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ++|+||.+||..........+ +..|+.....+++.+.+.+...+|.+.|
T Consensus        88 ~~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~~iV~~SS  136 (330)
T 2pzm_A           88 KPTHVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGVKRLLNFQT  136 (330)
T ss_dssp             CCSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred             CCCEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCCCEEEEecC
Confidence            999999999865322122233 7789999999999998876544544444

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=98.29  E-value=5.1e-06  Score=76.81  Aligned_cols=105  Identities=16%  Similarity=0.079  Sum_probs=68.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-C---CHHHHhC--CCCEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-Q---QLEDALT--GMDIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-~---d~~~al~--~aDiVI  119 (305)
                      |||.|+||+|++|++++..|+.. ++  +|+++|++...+....+.+......+..+.+. +   ++.++++  ++|+||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   78 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVM   78 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            58999999999999999998886 67  99999985411111111111001233332211 2   3445566  899999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHh
Q 021932          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKC  153 (305)
Q Consensus       120 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~  153 (305)
                      .+||.....  .....+++..|+.....+++.+.+.
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~  114 (361)
T 1kew_A           79 HLAAESHVDRSITGPAAFIETNIVGTYALLEVARKY  114 (361)
T ss_dssp             ECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHH
T ss_pred             ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999864310  0123456788999999999999887

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.28  E-value=3.6e-06  Score=82.82  Aligned_cols=102  Identities=18%  Similarity=0.166  Sum_probs=71.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch--hhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g--~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +|||.|+||+|++|+.++..|+..|+  +|+.++++....  ...|+.              ..+.++++++|+||.+|+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~~~v~~d~~--------------~~~~~~l~~~D~Vih~A~  210 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKPGKRFWDPL--------------NPASDLLDGADVLVHLAG  210 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCTTCEECCTT--------------SCCTTTTTTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCccceeeccc--------------chhHHhcCCCCEEEECCC
Confidence            67999999999999999999999998  999999876321  111111              122467899999999998


Q ss_pred             CCCC---CCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          124 VPRK---PGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       124 ~~~~---~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                      ....   ......+++..|+.....+++.+.+.. +.-+|.+.|
T Consensus       211 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS  254 (516)
T 3oh8_A          211 EPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASA  254 (516)
T ss_dssp             C-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEE
T ss_pred             CccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence            6422   112345577889999999999855444 444444433

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=98.28  E-value=3.1e-06  Score=72.97  Aligned_cols=101  Identities=19%  Similarity=0.159  Sum_probs=69.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec---CCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG---QQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~---t~d~~~al~~aDiVIi~ag  123 (305)
                      |||.|+||+|++|+.++..|+..|.  +|+++++++...  .++...    .+..+.+   ..+. ++++++|+||.++|
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~--~~~~~~----~~~~~~~D~~d~~~-~~~~~~d~vi~~ag   71 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQKA--ADRLGA----TVATLVKEPLVLTE-ADLDSVDAVVDALS   71 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--HHHTCT----TSEEEECCGGGCCH-HHHTTCSEEEECCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEeccccc--ccccCC----CceEEecccccccH-hhcccCCEEEECCc
Confidence            6899999999999999999999998  999999865211  112111    1121111   1122 67899999999998


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ....+..     ...|+...+.+++.+++.+ . .++++|
T Consensus        72 ~~~~~~~-----~~~n~~~~~~l~~a~~~~~-~-~~v~~S  104 (224)
T 3h2s_A           72 VPWGSGR-----GYLHLDFATHLVSLLRNSD-T-LAVFIL  104 (224)
T ss_dssp             CCTTSSC-----THHHHHHHHHHHHTCTTCC-C-EEEEEC
T ss_pred             cCCCcch-----hhHHHHHHHHHHHHHHHcC-C-cEEEEe
Confidence            7522221     2458899999999998877 4 444443

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=98.27  E-value=4e-06  Score=76.91  Aligned_cols=115  Identities=17%  Similarity=0.071  Sum_probs=76.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec----CCCHHHHhC--CCCE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG----QQQLEDALT--GMDI  117 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~--~aDi  117 (305)
                      .++|.|+||+|++|++++..|+..|.  +|+++|++.  ......++.... ...+..+..    ..+++++++  +.|+
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   81 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDERALARIFDAHPITA   81 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCHHHHHHHHhccCCcE
Confidence            46999999999999999999999998  999999865  222222222111 112222211    123445566  8999


Q ss_pred             EEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          118 VIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       118 VIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ||.+||.....  .....+.+..|+.....+++.+.+.+...+|.+.|
T Consensus        82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  129 (341)
T 3enk_A           82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSS  129 (341)
T ss_dssp             EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence            99999864211  11234667889999999999999887655555544

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=98.27  E-value=3.3e-06  Score=76.72  Aligned_cols=108  Identities=19%  Similarity=0.167  Sum_probs=70.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEE----ecCCCHHHHhCCCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~----~~t~d~~~al~~aDiVIi~  121 (305)
                      |+||.|+||+|++|++++..|+..|.  .+++.+........  + .    ..+..+    .. .++.++++++|+||.+
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~v~~~~~~~~~~~~--~-~----~~~~~~~~Dl~~-~~~~~~~~~~d~vih~   70 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESNE--IVVIDNLSSGNEEF--V-N----EAARLVKADLAA-DDIKDYLKGAEEVWHI   70 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTSC--EEEECCCSSCCGGG--S-C----TTEEEECCCTTT-SCCHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--EEEEEcCCCCChhh--c-C----CCcEEEECcCCh-HHHHHHhcCCCEEEEC
Confidence            35899999999999999999998883  44443333211110  0 0    011111    11 3456788999999999


Q ss_pred             CCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          122 AGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       122 ag~~~~--~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |+.+..  ......+.+..|+.....+++.+.+.+...+|.+.|
T Consensus        71 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS  114 (313)
T 3ehe_A           71 AANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTST  114 (313)
T ss_dssp             CCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCc
Confidence            986432  123456678889999999999999887555554444

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=98.27  E-value=3.5e-06  Score=72.89  Aligned_cols=97  Identities=19%  Similarity=0.268  Sum_probs=65.2

Q ss_pred             EEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec----CCCHHHHhCCCCEEEEcC
Q 021932           48 KVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~-~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~a  122 (305)
                      +|.|+||+|++|..++..|+ ..|+  +|+++++++.. ...++...  ...+..+..    ..+++++++++|+||.++
T Consensus         7 ~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~~-~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~a   81 (221)
T 3r6d_A            7 YITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKT-RIPPEIID--HERVTVIEGSFQNPGXLEQAVTNAEVVFVGA   81 (221)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHHH-HSCHHHHT--STTEEEEECCTTCHHHHHHHHTTCSEEEESC
T ss_pred             EEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCccc-cchhhccC--CCceEEEECCCCCHHHHHHHHcCCCEEEEcC
Confidence            49999999999999999999 7898  99999986420 11222111  122222211    124556789999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |..             |.. .+.+++.+++.+...+|.+.|
T Consensus        82 g~~-------------n~~-~~~~~~~~~~~~~~~iv~iSs  108 (221)
T 3r6d_A           82 MES-------------GSD-MASIVKALSRXNIRRVIGVSM  108 (221)
T ss_dssp             CCC-------------HHH-HHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCC-------------Chh-HHHHHHHHHhcCCCeEEEEee
Confidence            743             444 888888888776555554444

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=98.26  E-value=1.8e-06  Score=77.27  Aligned_cols=105  Identities=17%  Similarity=0.131  Sum_probs=75.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe----cCCCHHHHhCCCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL----GQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~----~t~d~~~al~~aDiVIi~  121 (305)
                      +++|.|+||+|++|+.++..|+..|.  +|++.|+++....         ...+..+.    ...++++++++.|+||.+
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~   71 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPA---------GPNEECVQCDLADANAVNAMVAGCDGIVHL   71 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCC---------CTTEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCcccc---------CCCCEEEEcCCCCHHHHHHHHcCCCEEEEC
Confidence            35799999999999999999999887  9999998762211         01111111    112356778899999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ||...  .....+.+..|+.....+++.+.+.....+|.+.|
T Consensus        72 Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS  111 (267)
T 3rft_A           72 GGISV--EKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASS  111 (267)
T ss_dssp             CSCCS--CCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCcC--cCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            98742  23345678889999999999998887655555554

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.25  E-value=8.3e-06  Score=79.24  Aligned_cols=110  Identities=16%  Similarity=0.160  Sum_probs=74.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc----------------CCceEEEEecCCCHH
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TNAVVRGFLGQQQLE  109 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~----------------~~~~v~~~~~t~d~~  109 (305)
                      ..+|+|||+ |+||..+|..|+..|+  +|+++|+++.+-.  .|....                ...+++.   ++|++
T Consensus         8 ~~~~~vIGl-G~vG~~~A~~La~~G~--~V~~~D~~~~kv~--~l~~g~~~~~epgl~~~~~~~~~~g~l~~---ttd~~   79 (446)
T 4a7p_A            8 SVRIAMIGT-GYVGLVSGACFSDFGH--EVVCVDKDARKIE--LLHQNVMPIYEPGLDALVASNVKAGRLSF---TTDLA   79 (446)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHH--HHTTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHH
T ss_pred             ceEEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHhcCCCCccCCCHHHHHHhhcccCCEEE---ECCHH
Confidence            459999998 9999999999999999  9999999873211  111110                0123554   35788


Q ss_pred             HHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec-CCCCc
Q 021932          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS-NPVNS  168 (305)
Q Consensus       110 ~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t-NPvd~  168 (305)
                      +++++||+||++.+.|...+...     -++..+++.++.|.++. ++.+|+..| -|.+.
T Consensus        80 ea~~~aDvvii~Vptp~~~~~~~-----~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  135 (446)
T 4a7p_A           80 EGVKDADAVFIAVGTPSRRGDGH-----ADLSYVFAAAREIAENLTKPSVIVTKSTVPVGT  135 (446)
T ss_dssp             HHHTTCSEEEECCCCCBCTTTCC-----BCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTH
T ss_pred             HHHhcCCEEEEEcCCCCccccCC-----ccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchH
Confidence            89999999999998876431111     23455666677777665 555555543 45544

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=98.23  E-value=9.4e-06  Score=73.37  Aligned_cols=99  Identities=19%  Similarity=0.195  Sum_probs=69.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      |||.|+||+|++|++++..|...|+  +|+.+.+++..+            .+..  ...+ .++++++|.||.+++.+-
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~~------------~~~~--~~~~-~~~l~~~d~vihla~~~i   63 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGPG------------RITW--DELA-ASGLPSCDAAVNLAGENI   63 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTT------------EEEH--HHHH-HHCCCSCSEEEECCCCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCcC------------eeec--chhh-HhhccCCCEEEEeccCcc
Confidence            7999999999999999999999999  999998754211            1110  0112 367899999999987431


Q ss_pred             C-----CCC-chhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEe
Q 021932          127 K-----PGM-TRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLI  162 (305)
Q Consensus       127 ~-----~g~-~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~  162 (305)
                      -     ... ...++...|+...+.+++.+++... ..+++..
T Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~  106 (298)
T 4b4o_A           64 LNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLV  106 (298)
T ss_dssp             SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence            1     111 2345677789999999998887763 3344433

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=98.22  E-value=1.1e-05  Score=68.17  Aligned_cols=104  Identities=13%  Similarity=0.139  Sum_probs=69.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec----CCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~a  122 (305)
                      |||.|+||+|++|+.++..|+..|.  +|+++++++...  .++.    ...+..+..    ..++.++++++|+||.++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~~--~~~~----~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a   75 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRL--PSEG----PRPAHVVVGDVLQAADVDKTVAGQDAVIVLL   75 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGS--CSSS----CCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhhc--cccc----CCceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence            6999999999999999999999997  999999865211  0110    111222111    123557789999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |.......     ...|......+++.+.+...+-++.+.|
T Consensus        76 ~~~~~~~~-----~~~n~~~~~~~~~~~~~~~~~~~v~~Ss  111 (206)
T 1hdo_A           76 GTRNDLSP-----TTVMSEGARNIVAAMKAHGVDKVVACTS  111 (206)
T ss_dssp             CCTTCCSC-----CCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             cCCCCCCc-----cchHHHHHHHHHHHHHHhCCCeEEEEee
Confidence            86532111     1357888889999988876554444333

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=98.21  E-value=4.2e-06  Score=76.12  Aligned_cols=110  Identities=13%  Similarity=0.071  Sum_probs=72.1

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec----CCCHHHHhCC--C
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTG--M  115 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~~--a  115 (305)
                      ++.+.++|.|+||+|++|++++..|+..|+  +|+++|++... ..  +       .+..+.+    ..++.+++++  .
T Consensus         8 ~~~~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~--l-------~~~~~~~Dl~d~~~~~~~~~~~~~   75 (321)
T 2pk3_A            8 HHHGSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEA-KL--P-------NVEMISLDIMDSQRVKKVISDIKP   75 (321)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTC-CC--T-------TEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             cccCcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcc-cc--c-------eeeEEECCCCCHHHHHHHHHhcCC
Confidence            345567999999999999999999999998  99999987532 11  1       1221111    1134455665  8


Q ss_pred             CEEEEcCCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          116 DIVIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       116 DiVIi~ag~~~~--~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |+||.+||....  ...+..+.+..|+.....+++.+.+......++.+|
T Consensus        76 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  125 (321)
T 2pk3_A           76 DYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIG  125 (321)
T ss_dssp             SEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred             CEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc
Confidence            999999986431  112345677889999999999997764333444443

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.21  E-value=4.6e-06  Score=71.29  Aligned_cols=107  Identities=12%  Similarity=0.101  Sum_probs=72.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC----CCHHHHhCCCCEEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTGMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t----~d~~~al~~aDiVIi  120 (305)
                      +.+||.|+||+|++|+.++..|+..|...+|+++++++..      .+    ..+..+...    .++++++  +|+||.
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~------~~----~~~~~~~~D~~~~~~~~~~~--~d~vi~   71 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------EH----PRLDNPVGPLAELLPQLDGS--IDTAFC   71 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------CC----TTEECCBSCHHHHGGGCCSC--CSEEEE
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc------cC----CCceEEeccccCHHHHHHhh--hcEEEE
Confidence            3569999999999999999999998875589999987532      00    112211110    1122233  899999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ++|.......+..+++..|......+++.+.+.+..-++.+.|
T Consensus        72 ~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss  114 (215)
T 2a35_A           72 CLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSA  114 (215)
T ss_dssp             CCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECC
Confidence            9986432223456677889999999999998876544444333

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=98.20  E-value=5.1e-06  Score=77.90  Aligned_cols=113  Identities=18%  Similarity=0.063  Sum_probs=75.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC----CCHHHHhCCCCEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTGMDIVI  119 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t----~d~~~al~~aDiVI  119 (305)
                      ++|||.|+||+|++|+.++..|+..| .  +|+++|++..... ..+..   ...+..+.+.    .++.++++++|+||
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~-~~l~~---~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi  104 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK-INVPD---HPAVRFSETSITDDALLASLQDEYDYVF  104 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCG-GGSCC---CTTEEEECSCTTCHHHHHHCCSCCSEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCch-hhccC---CCceEEEECCCCCHHHHHHHhhCCCEEE
Confidence            45799999999999999999999988 7  9999998652111 11110   1223332211    13456678999999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEec
Q 021932          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLIS  163 (305)
Q Consensus       120 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~t  163 (305)
                      .+|+.....  ..+..+.+..|+.....+++.+.+. ....+|.+.|
T Consensus       105 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS  151 (377)
T 2q1s_A          105 HLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAA  151 (377)
T ss_dssp             ECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred             ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence            999854211  0134557788999999999999876 4444444444

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=98.20  E-value=4.4e-06  Score=73.00  Aligned_cols=114  Identities=18%  Similarity=0.104  Sum_probs=74.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      .++|.|+||+|++|+.++..|+..|...+|+++|+++...........   ..+.. +....++++++++.|+||.++|.
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~---~~~~~D~~d~~~~~~~~~~~d~vi~~ag~   94 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNV---NQEVVDFEKLDDYASAFQGHDVGFCCLGT   94 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGC---EEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCc---eEEecCcCCHHHHHHHhcCCCEEEECCCc
Confidence            358999999999999999999998876689999987621110000000   00110 11113456778899999999985


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ... +....+++..|+.....+++.+.+.....+|.+.|
T Consensus        95 ~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS  132 (242)
T 2bka_A           95 TRG-KAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSS  132 (242)
T ss_dssp             CHH-HHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ccc-cCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEcc
Confidence            421 11234567788888999999988776544444433

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=98.20  E-value=2.7e-06  Score=75.80  Aligned_cols=104  Identities=23%  Similarity=0.203  Sum_probs=73.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec----CCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~a  122 (305)
                      +||.|+||+|++|+.++..|+..|.  +|+++|++.....    .     ..+..+..    ..++.+++++.|+||.++
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~----~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   71 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGAA----E-----AHEEIVACDLADAQAVHDLVKDCDGIIHLG   71 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCCC----C-----TTEEECCCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCcccc----C-----CCccEEEccCCCHHHHHHHHcCCCEEEECC
Confidence            5899999999999999999998886  9999998752110    0     01111111    123557789999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |...  .....+.+..|+.....+++.+.+.....+|.+.|
T Consensus        72 ~~~~--~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS  110 (267)
T 3ay3_A           72 GVSV--ERPWNDILQANIIGAYNLYEAARNLGKPRIVFASS  110 (267)
T ss_dssp             SCCS--CCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             cCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            8652  23345677889999999999998876555555444

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=98.19  E-value=1.1e-05  Score=74.28  Aligned_cols=112  Identities=17%  Similarity=0.073  Sum_probs=73.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-C---CHHHHhCC--CCEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-Q---QLEDALTG--MDIV  118 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-~---d~~~al~~--aDiV  118 (305)
                      ++|||.|+||+|++|++++..|+..|.  +|+++|++.... ...+...   ..+..+.+. +   ++.+++++  +|+|
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~-~~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~D~v   93 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGR-REHLKDH---PNLTFVEGSIADHALVNQLIGDLQPDAV   93 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCC-GGGSCCC---TTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccc-hhhHhhc---CCceEEEEeCCCHHHHHHHHhccCCcEE
Confidence            456999999999999999999999997  999999865211 0111111   122222111 2   24456777  9999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       119 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |.+||..........+ +..|+.....+++.+.+.+...+|.+.|
T Consensus        94 ih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~~iV~~SS  137 (333)
T 2q1w_A           94 VHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNVGRFVYFQT  137 (333)
T ss_dssp             EECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             EECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCCCEEEEECc
Confidence            9999865322122223 7789999999999998866544544443

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=98.19  E-value=7.9e-06  Score=75.57  Aligned_cols=117  Identities=15%  Similarity=0.032  Sum_probs=76.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccC---CceEEEEecC----CCHHHHhCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT---NAVVRGFLGQ----QQLEDALTGM  115 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~---~~~v~~~~~t----~d~~~al~~a  115 (305)
                      +++||.|+||+|++|+.++..|+..|.  +|+++|++..  .....++.....   ...+..+.+.    .++.++++++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            346999999999999999999999997  9999998652  111111211000   0223322211    2355678899


Q ss_pred             CEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          116 DIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       116 DiVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |+||.+||.....  ..+..+.+..|+.....+++.+.+.+...+|.+.|
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS  153 (352)
T 1sb8_A          104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAAS  153 (352)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence            9999999854211  01234567789999999999998876554554444

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=98.19  E-value=1.4e-05  Score=72.06  Aligned_cols=110  Identities=12%  Similarity=0.110  Sum_probs=74.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCC-----CCEEEEc
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG-----MDIVIIP  121 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~-----aDiVIi~  121 (305)
                      ||.|+||+|++|++++..|+..| .  +|+++++........++........+.   ....+++++++     +|+||.+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~d~vi~~   75 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMD---KEDFLIQIMAGEEFGDVEAIFHE   75 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGGHHHHTSCCSEEEE---HHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc--EEEEEccCCCCchhhhcCcceeccccc---cHHHHHHHHhccccCCCcEEEEC
Confidence            58999999999999999999988 6  899999865221111222111111111   11234456664     9999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |+.......+..+.+..|+.....+++.+.+.+. -+|.+.|
T Consensus        76 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS  116 (310)
T 1eq2_A           76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASS  116 (310)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEE
T ss_pred             cccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEee
Confidence            9865433344566788899999999999998876 4444444

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=98.18  E-value=2.7e-06  Score=76.49  Aligned_cols=102  Identities=21%  Similarity=0.206  Sum_probs=72.0

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC--CCCEEE
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVI  119 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiVI  119 (305)
                      +..+++||.|+||+|++|++++..|+..|+  +|+++|++.     .|+.+.            .+++++++  ++|+||
T Consensus         8 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~Dl~d~------------~~~~~~~~~~~~d~vi   68 (292)
T 1vl0_A            8 HHHHHMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITNV------------LAVNKFFNEKKPNVVI   68 (292)
T ss_dssp             ----CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTCH------------HHHHHHHHHHCCSEEE
T ss_pred             cccccceEEEECCCChHHHHHHHHHHhCCC--eEEeccCcc-----CCCCCH------------HHHHHHHHhcCCCEEE
Confidence            345567999999999999999999998887  999998752     233332            12445666  799999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       120 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .+||.....  ..+..+.+..|+.....+++.+.+.+. .+|.+.|
T Consensus        69 h~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS  113 (292)
T 1vl0_A           69 NCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQIST  113 (292)
T ss_dssp             ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred             ECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEech
Confidence            999864210  123456778899999999999998765 4444333

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=98.18  E-value=2.2e-06  Score=76.84  Aligned_cols=97  Identities=21%  Similarity=0.241  Sum_probs=71.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC--CCCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~  124 (305)
                      |||.|+||+|++|++++..|+..|+  +|+.+++.+     .|+.+..            ++.++++  ++|+||.+|+.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~D~~d~~------------~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL-----LDITNIS------------QVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT-----SCTTCHH------------HHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc-----cCCCCHH------------HHHHHHHhcCCCEEEECCcc
Confidence            5899999999999999999998887  999998733     3333321            2345566  69999999986


Q ss_pred             CCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       125 ~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ....  ..+..+.+..|+.....+++.+.+.+.. +|.+.|
T Consensus        67 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~v~~SS  106 (287)
T 3sc6_A           67 TKVDQAEKERDLAYVINAIGARNVAVASQLVGAK-LVYIST  106 (287)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCE-EEEEEE
T ss_pred             cChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCe-EEEEch
Confidence            5321  1345667888999999999999988763 444333

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.17  E-value=4e-06  Score=72.33  Aligned_cols=99  Identities=20%  Similarity=0.251  Sum_probs=63.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch--hhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g--~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      |||+|+||+|.+|+.++..|+..++  +|.++|+++...  ...++........+..    ++++++++++|+||++...
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIAGDASITG----MKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHHSSCCEEE----EEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccccccCCCCh----hhHHHHHhcCCEEEEeCCh
Confidence            5899999559999999999998887  999999875211  1111110000012331    2566889999999998631


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                      .                .++++++.+.+..++.+++.++|+.+
T Consensus        75 ~----------------~~~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           75 E----------------HAIDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             H----------------HHHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             h----------------hHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            1                12233334443335788888899876

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=98.15  E-value=2.1e-05  Score=72.37  Aligned_cols=113  Identities=13%  Similarity=0.051  Sum_probs=74.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      +++||.|+||+|++|+.++..|+..|+  +|+++|++.... ...+.+......+..+.+.- ...++.++|+||.+|+.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~-~~~~~~~~d~vih~A~~  101 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGR-KRNVEHWIGHENFELINHDV-VEPLYIEVDQIYHLASP  101 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCC-GGGTGGGTTCTTEEEEECCT-TSCCCCCCSEEEECCSC
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCccc-hhhhhhhccCCceEEEeCcc-CChhhcCCCEEEECccc
Confidence            356999999999999999999999987  999999864211 01111111112344332211 12457899999999985


Q ss_pred             CCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          125 PRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       125 ~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ....  ..+..+.+..|+.....+++.+.+.+.  .++.+|
T Consensus       102 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  140 (343)
T 2b69_A          102 ASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLAS  140 (343)
T ss_dssp             CSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEC
Confidence            4211  123455678899999999999998864  344443

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=98.15  E-value=1.2e-05  Score=72.83  Aligned_cols=145  Identities=14%  Similarity=0.182  Sum_probs=69.0

Q ss_pred             hhhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhhhhhhccc
Q 021932           17 AHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD   94 (305)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~   94 (305)
                      -|+|+++...-.++.+|+++......+.+.+++.|+||+|.+|..++..|++.|.  +|+++|+++  +.....++....
T Consensus         4 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~   81 (281)
T 4dry_A            4 HHHHSSGVDLGTENLYFQSMMAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRT   81 (281)
T ss_dssp             ------------------------------CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccceEEEeccccccCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC
Confidence            4788899988888988888766655555667899999999999999999999998  899999976  222223333211


Q ss_pred             CCceEEEEe-cCCC---HHHH-------hCCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHH----HHHHHHHHHH
Q 021932           95 TNAVVRGFL-GQQQ---LEDA-------LTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAK  152 (305)
Q Consensus        95 ~~~~v~~~~-~t~d---~~~a-------l~~aDiVIi~ag~~~~~g----~~---r~d~~~~N~~i----~~~i~~~I~~  152 (305)
                       ...+..+. .-+|   .++.       +...|++|.+||.....+    .+   ....+..|+..    .+.+.+.+.+
T Consensus        82 -~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~  160 (281)
T 4dry_A           82 -GNIVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKA  160 (281)
T ss_dssp             -SSCEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             -CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence             11112111 1122   2222       236799999999743221    11   22345556544    5666666666


Q ss_pred             hC-CCcEEEEecC
Q 021932          153 CC-PKAIVNLISN  164 (305)
Q Consensus       153 ~~-p~aiviv~tN  164 (305)
                      .. ..+.|+++|.
T Consensus       161 ~~~~~g~IV~isS  173 (281)
T 4dry_A          161 QTPRGGRIINNGS  173 (281)
T ss_dssp             SSSCCEEEEEECC
T ss_pred             cCCCCcEEEEECC
Confidence            55 2566777654

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.15  E-value=4.1e-06  Score=81.66  Aligned_cols=117  Identities=17%  Similarity=0.190  Sum_probs=73.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCCchhhh-------------hhhcccCCceEEEEecCCCHHH
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTA-------------DISHMDTNAVVRGFLGQQQLED  110 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~--~~~~el~L~D~~~~~g~~~-------------DL~~~~~~~~v~~~~~t~d~~~  110 (305)
                      +|||+|||+ |.||..+|..|+..  |+  +|+++|+++.+...+             ++........++.   ++++++
T Consensus         5 ~mkI~VIG~-G~mG~~lA~~La~~g~G~--~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~---t~~~~e   78 (467)
T 2q3e_A            5 IKKICCIGA-GYVGGPTCSVIAHMCPEI--RVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF---STNIDD   78 (467)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTS--EEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCHHH
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCCCC--EEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE---ECCHHH
Confidence            469999998 99999999999988  56  999999976211110             0110000123443   356778


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCcc
Q 021932          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNST  169 (305)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~-tNPvd~l  169 (305)
                      ++++||+||++.+.|........+ -..+...+.+.++.+.++. |+.+|+.. |+|....
T Consensus        79 ~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~  138 (467)
T 2q3e_A           79 AIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAA  138 (467)
T ss_dssp             HHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHH
T ss_pred             HHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHH
Confidence            899999999998766532210000 0123455667777777765 55565554 6777653

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=98.15  E-value=5.7e-06  Score=75.21  Aligned_cols=99  Identities=13%  Similarity=0.107  Sum_probs=71.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC--CCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag  123 (305)
                      .|||.|+||+|++|++++..|+..|+  +|++++...    ..|+.+.            .++.++++  ++|+||.+|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~--~v~~~~r~~----~~D~~d~------------~~~~~~~~~~~~d~vih~a~   64 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRD----ELNLLDS------------RAVHDFFASERIDQVYLAAA   64 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTT----TCCTTCH------------HHHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEecCc----cCCccCH------------HHHHHHHHhcCCCEEEEcCe
Confidence            46999999999999999999998887  888887642    1233321            13456677  9999999998


Q ss_pred             CCCCC---CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Q 021932          124 VPRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (305)
Q Consensus       124 ~~~~~---g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~  162 (305)
                      .....   ..+..+.+..|+...+.+++.+.+.+..-+|.+.
T Consensus        65 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~S  106 (321)
T 1e6u_A           65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLG  106 (321)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             ecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence            64211   1234556788999999999999887654444433

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=98.14  E-value=4.5e-06  Score=76.24  Aligned_cols=108  Identities=18%  Similarity=0.083  Sum_probs=71.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC----CCHHHHhC--CCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALT--GMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t----~d~~~al~--~aDiVI  119 (305)
                      ||||.|+||+|++|++++..|+..|+  +|+++|++..... ..+..     .+..+.+.    .++.++++  ++|+||
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~d~vi   72 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQTGHE-DAITE-----GAKFYNGDLRDKAFLRDVFTQENIEAVM   72 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCT-----TSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCcCch-hhcCC-----CcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            36999999999999999999999997  9999997642111 11111     11211111    12445667  899999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 021932          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (305)
Q Consensus       120 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv  161 (305)
                      .+|+.....  ..+..+.+..|+.....+++.+.+.+...+|.+
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~  116 (330)
T 2c20_A           73 HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFS  116 (330)
T ss_dssp             ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEe
Confidence            999864211  013445678899999999999988765444443

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.14  E-value=5.6e-06  Score=77.07  Aligned_cols=101  Identities=16%  Similarity=0.209  Sum_probs=68.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCC-------CCcEEEEEeCCCC-----chhhhhhhccc--C------CceEEEEec
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNT-----PGVTADISHMD--T------NAVVRGFLG  104 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~-------~~~el~L~D~~~~-----~g~~~DL~~~~--~------~~~v~~~~~  104 (305)
                      .+|||+|||+ |.+|..++..|+..|       +  +|.++|+++.     ....+.-.+..  .      ...+..   
T Consensus         7 ~~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---   80 (354)
T 1x0v_A            7 ASKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDP--RVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA---   80 (354)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEE--EEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE---
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE---
Confidence            3579999998 999999999998877       5  9999998763     22222111100  0      112343   


Q ss_pred             CCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 021932          105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (305)
Q Consensus       105 t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd  167 (305)
                      +++++++++++|+||++...                ..+.++++.+..+. |+.+++.++|-.+
T Consensus        81 ~~~~~~~~~~aD~Vilav~~----------------~~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           81 VPDVVQAAEDADILIFVVPH----------------QFIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             ESSHHHHHTTCSEEEECCCG----------------GGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             EcCHHHHHcCCCEEEEeCCH----------------HHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            24677889999999998621                12455666777665 6788888888554

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.13  E-value=6.9e-06  Score=75.63  Aligned_cols=70  Identities=14%  Similarity=0.206  Sum_probs=51.9

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      ...+++||+|||+ |.+|..++..|+..|+  +|.++|+++.+.  .++....    +..   .++++++++++|+||++
T Consensus        17 ~~~~m~~I~iIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~--~~l~~~g----~~~---~~~~~~~~~~aDvvi~~   84 (310)
T 3doj_A           17 RGSHMMEVGFLGL-GIMGKAMSMNLLKNGF--KVTVWNRTLSKC--DELVEHG----ASV---CESPAEVIKKCKYTIAM   84 (310)
T ss_dssp             -CCCSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGG--HHHHHTT----CEE---CSSHHHHHHHCSEEEEC
T ss_pred             ccccCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHCC----CeE---cCCHHHHHHhCCEEEEE
Confidence            4455689999998 9999999999999998  999999976322  2222211    222   34678889999999998


Q ss_pred             CC
Q 021932          122 AG  123 (305)
Q Consensus       122 ag  123 (305)
                      ..
T Consensus        85 vp   86 (310)
T 3doj_A           85 LS   86 (310)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.13  E-value=1.2e-05  Score=74.26  Aligned_cols=90  Identities=19%  Similarity=0.277  Sum_probs=51.1

Q ss_pred             CCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceE
Q 021932           20 HPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV   99 (305)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v   99 (305)
                      |.++.....+..+|+.+...  ...+.+||+|||+ |.+|..++..|+..|+  +|.++|+++.+  +.++....    +
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~--~~~l~~~g----~   75 (320)
T 4dll_A            7 HSSGVDLGTENLYFQSMTVE--SDPYARKITFLGT-GSMGLPMARRLCEAGY--ALQVWNRTPAR--AASLAALG----A   75 (320)
T ss_dssp             ------------------------CCCSEEEEECC-TTTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTT----C
T ss_pred             ccccccccccccceechhhc--cccCCCEEEEECc-cHHHHHHHHHHHhCCC--eEEEEcCCHHH--HHHHHHCC----C
Confidence            33444445555455554322  2345679999998 9999999999999998  99999987521  12222221    2


Q ss_pred             EEEecCCCHHHHhCCCCEEEEcCC
Q 021932          100 RGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus       100 ~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ..   .++++++++++|+||++..
T Consensus        76 ~~---~~~~~e~~~~aDvVi~~vp   96 (320)
T 4dll_A           76 TI---HEQARAAARDADIVVSMLE   96 (320)
T ss_dssp             EE---ESSHHHHHTTCSEEEECCS
T ss_pred             Ee---eCCHHHHHhcCCEEEEECC
Confidence            22   2467889999999999863

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.13  E-value=1.8e-05  Score=71.85  Aligned_cols=117  Identities=19%  Similarity=0.286  Sum_probs=71.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccC----Cc-----eEEEEecCCCHHHHhCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----NA-----VVRGFLGQQQLEDALTGMD  116 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~----~~-----~v~~~~~t~d~~~al~~aD  116 (305)
                      +|||+|||+ |.+|..++..|...|+  +|.++|+++...  ..+.....    ..     .+.... ..+..++++++|
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d   76 (316)
T 2ew2_A            3 AMKIAIAGA-GAMGSRLGIMLHQGGN--DVTLIDQWPAHI--EAIRKNGLIADFNGEEVVANLPIFS-PEEIDHQNEQVD   76 (316)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHHCEEEEETTEEEEECCCEEC-GGGCCTTSCCCS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCHHHH--HHHHhCCEEEEeCCCeeEecceeec-chhhcccCCCCC
Confidence            579999998 9999999999999998  999999875211  11111100    00     111111 111223344999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEE-Ee
Q 021932          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL-GV  191 (305)
Q Consensus       117 iVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kvi-G~  191 (305)
                      +||++...                ..+.++++.+.++. |+.+|+.++|..+..     +.+.+  .+++.+++ |.
T Consensus        77 ~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~-----~~l~~--~~~~~~vi~g~  130 (316)
T 2ew2_A           77 LIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLGHE-----DVLEK--YVPKENILVGI  130 (316)
T ss_dssp             EEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSCTH-----HHHTT--TSCGGGEEEEE
T ss_pred             EEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCCcH-----HHHHH--HcCCccEEEEE
Confidence            99998631                12466667777765 678888888887742     22222  35556777 44

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=98.12  E-value=1.3e-05  Score=77.94  Aligned_cols=118  Identities=13%  Similarity=0.057  Sum_probs=80.4

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhC---CCCcEEEEEeCCCCchhh-hhhhccc--------------CCceEEEEe
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKIN---PLVSVLHLYDVVNTPGVT-ADISHMD--------------TNAVVRGFL  103 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~---~~~~el~L~D~~~~~g~~-~DL~~~~--------------~~~~v~~~~  103 (305)
                      ...++++|.|+||+|++|+.++..|+..   |.  +|+++++.+....+ ..+.+..              ....+..+.
T Consensus        69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~--~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~  146 (478)
T 4dqv_A           69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDG--RLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVA  146 (478)
T ss_dssp             CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTC--EEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEE
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCC--EEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEE
Confidence            3455679999999999999999999887   55  99999987621111 1111110              012344332


Q ss_pred             cC----------CCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          104 GQ----------QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       104 ~t----------~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +.          .++.+.++++|+||.+|+....  ....+.+..|+.....+++.+.+...+.+|.+.|
T Consensus       147 ~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS  214 (478)
T 4dqv_A          147 GDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLKPFTYVST  214 (478)
T ss_dssp             CCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred             eECCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence            21          1345667899999999986532  3334567889999999999999877666766666

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.12  E-value=6.7e-06  Score=74.83  Aligned_cols=97  Identities=15%  Similarity=0.211  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ++||+|||+ |.+|..++..|...|+ ..+|.++|+++..  ..++....   .++.   ..+..++++++|+||++.  
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~--~~~l~~~~---gi~~---~~~~~~~~~~aDvVilav--   71 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDK--LDFFKEKC---GVHT---TQDNRQGALNADVVVLAV--   71 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHH--HHHHHHTT---CCEE---ESCHHHHHSSCSEEEECS--
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHH--HHHHHHHc---CCEE---eCChHHHHhcCCeEEEEe--
Confidence            469999999 9999999999999885 5689999997621  12222211   1222   235678899999999986  


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHh--CCCcEEEEecCCCC
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKC--CPKAIVNLISNPVN  167 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~--~p~aiviv~tNPvd  167 (305)
                        ++            ..+.++++++..+  .++.+++.+++.+.
T Consensus        72 --~p------------~~~~~vl~~l~~~~l~~~~iiiS~~agi~  102 (280)
T 3tri_A           72 --KP------------HQIKMVCEELKDILSETKILVISLAVGVT  102 (280)
T ss_dssp             --CG------------GGHHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred             --CH------------HHHHHHHHHHHhhccCCCeEEEEecCCCC
Confidence              11            1244555666655  46667776677665

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.12  E-value=8.8e-06  Score=75.08  Aligned_cols=82  Identities=11%  Similarity=0.118  Sum_probs=48.6

Q ss_pred             ccccccCCC-CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHH
Q 021932           33 LGRMDCRAK-GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA  111 (305)
Q Consensus        33 ~~~~~~~~~-~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~a  111 (305)
                      |.+....+. +...++||+|||+ |.+|..++..|+..|+ .+|.++|+++.......+....    +..   .++++++
T Consensus        10 ~~~~~~~~~~~~~~~~~I~iIG~-G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~~~~~~~~~g----~~~---~~~~~e~   80 (312)
T 3qsg_A           10 GVDLGTENLYFQSNAMKLGFIGF-GEAASAIASGLRQAGA-IDMAAYDAASAESWRPRAEELG----VSC---KASVAEV   80 (312)
T ss_dssp             ---------------CEEEEECC-SHHHHHHHHHHHHHSC-CEEEEECSSCHHHHHHHHHHTT----CEE---CSCHHHH
T ss_pred             ccccCcccccccCCCCEEEEECc-cHHHHHHHHHHHHCCC-CeEEEEcCCCCHHHHHHHHHCC----CEE---eCCHHHH
Confidence            433333344 3455689999998 9999999999998885 4899999962011111122211    222   2467788


Q ss_pred             hCCCCEEEEcCC
Q 021932          112 LTGMDIVIIPAG  123 (305)
Q Consensus       112 l~~aDiVIi~ag  123 (305)
                      +++||+||++..
T Consensus        81 ~~~aDvVi~~vp   92 (312)
T 3qsg_A           81 AGECDVIFSLVT   92 (312)
T ss_dssp             HHHCSEEEECSC
T ss_pred             HhcCCEEEEecC
Confidence            999999999864

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=98.11  E-value=6.3e-06  Score=74.85  Aligned_cols=104  Identities=14%  Similarity=0.120  Sum_probs=57.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCC--CCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG--MDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~--aDiVIi~ag  123 (305)
                      .+||.|+||+|++|++++..|+..|+  +|+++|++...+   ...    ..++..   ..++.+++++  +|+||.+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~---~~~----~~Dl~d---~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRARP---KFE----QVNLLD---SNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC----------------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCCC---CeE----EecCCC---HHHHHHHHHhhCCCEEEECCc
Confidence            36899999999999999999999997  999999754221   000    011111   1234566664  899999998


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          124 VPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       124 ~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .....  ..+..+.+..|+.....+++.+.+.+.  .++.+|
T Consensus        70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  109 (315)
T 2ydy_A           70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYIS  109 (315)
T ss_dssp             ------------------CHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            64321  123445677899999999999988764  444443

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=98.11  E-value=9.7e-06  Score=70.68  Aligned_cols=113  Identities=20%  Similarity=0.128  Sum_probs=73.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEc
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~--~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~  121 (305)
                      ++++|.|+||+|++|+.++..|+..  +.  +|+++++++..  ..++...  ...+.. .....+++++++++|+||.+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~--~V~~~~r~~~~--~~~~~~~--~~~~~~D~~d~~~~~~~~~~~d~vi~~   76 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF--VAKGLVRSAQG--KEKIGGE--ADVFIGDITDADSINPAFQGIDALVIL   76 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC--EEEEEESCHHH--HHHTTCC--TTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc--EEEEEEcCCCc--hhhcCCC--eeEEEecCCCHHHHHHHHcCCCEEEEe
Confidence            4569999999999999999999998  56  99999986421  1112110  011111 11112456778999999999


Q ss_pred             CCCCCC------------CCCc---hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          122 AGVPRK------------PGMT---RDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       122 ag~~~~------------~g~~---r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +|....            +...   ..+.+..|+.....+++.+.+.....+|.+.|
T Consensus        77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  133 (253)
T 1xq6_A           77 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGS  133 (253)
T ss_dssp             CCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred             ccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcC
Confidence            985421            1100   11356789999999999998886554544444

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.11  E-value=9.3e-06  Score=75.17  Aligned_cols=95  Identities=15%  Similarity=0.185  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHH-HhCCCCEEEEc
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLED-ALTGMDIVIIP  121 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~-al~~aDiVIi~  121 (305)
                      .+.+||+|||+ |.+|..++..|...|+..+|+++|+++. ...+.++   ....  ..   .+++++ ++++||+||++
T Consensus        31 ~~~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~---G~~~--~~---~~~~~~~~~~~aDvVila  101 (314)
T 3ggo_A           31 LSMQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL---GIID--EG---TTSIAKVEDFSPDFVMLS  101 (314)
T ss_dssp             CSCSEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT---TSCS--EE---ESCTTGGGGGCCSEEEEC
T ss_pred             cCCCEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC---CCcc--hh---cCCHHHHhhccCCEEEEe
Confidence            34579999998 9999999999999998669999999762 1111211   1100  11   235567 79999999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                      ....                .+.++++.+..+. |+++|+.++
T Consensus       102 vp~~----------------~~~~vl~~l~~~l~~~~iv~d~~  128 (314)
T 3ggo_A          102 SPVR----------------TFREIAKKLSYILSEDATVTDQG  128 (314)
T ss_dssp             SCGG----------------GHHHHHHHHHHHSCTTCEEEECC
T ss_pred             CCHH----------------HHHHHHHHHhhccCCCcEEEECC
Confidence            6311                1334445565554 677776554

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=98.11  E-value=1.3e-05  Score=72.65  Aligned_cols=113  Identities=11%  Similarity=-0.003  Sum_probs=70.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CCC---ch-hhhhhhcccCCceEEEEe----cCCCHHHHhCCCCE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNT---PG-VTADISHMDTNAVVRGFL----GQQQLEDALTGMDI  117 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~-~~~---~g-~~~DL~~~~~~~~v~~~~----~t~d~~~al~~aDi  117 (305)
                      +||.|+||+|++|++++..|+..|+  +|+.+++ +..   .. ...++...  ...+..+.    ...+++++++++|+
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~   77 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSFLTNLPGA--SEKLHFFNADLSNPDSFAAAIEGCVG   77 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHHHHTSTTH--HHHEEECCCCTTCGGGGHHHHTTCSE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHHHHhhhcc--CCceEEEecCCCCHHHHHHHHcCCCE
Confidence            4899999999999999999999998  8888876 431   11 11111100  01122211    11346678899999


Q ss_pred             EEEcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEec
Q 021932          118 VIIPAGVPRKPGMT-RDDLFNINAGIVKTLCEGIAKC-CPKAIVNLIS  163 (305)
Q Consensus       118 VIi~ag~~~~~g~~-r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~t  163 (305)
                      ||.+|+.......+ ..+++..|+.....+++.+.+. +...+|.+.|
T Consensus        78 vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS  125 (322)
T 2p4h_X           78 IFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSS  125 (322)
T ss_dssp             EEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred             EEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecc
Confidence            99999642111111 2347788999999999998877 3444444443

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=98.11  E-value=1.7e-05  Score=72.68  Aligned_cols=108  Identities=14%  Similarity=0.091  Sum_probs=71.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-C----CHHHHhCCCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-Q----QLEDALTGMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-~----d~~~al~~aDiVIi  120 (305)
                      |||.|+||+|++|++++..|+.. |+  +|+++|++....  .++..   ...+..+.+. +    .++++++++|+||.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~d~vih   73 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGG--GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchH--HHhhc---CCCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence            58999999999999999999987 77  999999865211  11111   1123322111 1    24457789999999


Q ss_pred             cCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       121 ~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +||.....  ..+..+.+..|+.....+++.+.+.+  ..++.+|
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~S  116 (345)
T 2bll_A           74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPS  116 (345)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEEC
T ss_pred             cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEe
Confidence            99864211  11334567788888999999988876  3444444

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=98.11  E-value=6.3e-06  Score=74.62  Aligned_cols=110  Identities=17%  Similarity=0.108  Sum_probs=72.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +++||.|+||+|++|++++..|+..|+  +|+.+|++...  +....+.+......+..      ...++.++|+||.+|
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~Dl~~~d~vi~~a   77 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPPMIPPEGTGKFLEKPVLEL------EERDLSDVRLVYHLA   77 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCCSSCCTTSSEEECSCGGGC------CHHHHTTEEEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccccchhhhhhhccCCCeeE------EeCccccCCEEEECC
Confidence            357999999999999999999999998  99999986521  11111111110111111      234456999999999


Q ss_pred             CCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          123 GVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       123 g~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +.....  .....+.+. |+...+.+++.+.+.+..-+|.+.|
T Consensus        78 ~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS  119 (321)
T 3vps_A           78 SHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGST  119 (321)
T ss_dssp             CCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             ccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecC
Confidence            854210  112233456 9999999999999988555555444

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=98.11  E-value=1.1e-05  Score=74.13  Aligned_cols=115  Identities=19%  Similarity=0.079  Sum_probs=74.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--------hhhhhhhcccCCceEEEEecC-C---CHHHHhC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--------GVTADISHMDTNAVVRGFLGQ-Q---QLEDALT  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--------g~~~DL~~~~~~~~v~~~~~t-~---d~~~al~  113 (305)
                      .+||.|+||+|++|++++..|+..|+  +|+++|+....        ....++.... ...+..+.+. +   ++.++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~   78 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFK   78 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHH
Confidence            46999999999999999999999997  89999875311        1122222110 1122222111 2   2445566


Q ss_pred             --CCCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          114 --GMDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       114 --~aDiVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                        ++|+||.+||.....  .....+.+..|+.....+++.+.+.+...+|.+.|
T Consensus        79 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  132 (348)
T 1ek6_A           79 KYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSS  132 (348)
T ss_dssp             HCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             hcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECc
Confidence              899999999854211  02234677889999999999998876555554444

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.11  E-value=4e-06  Score=86.02  Aligned_cols=101  Identities=19%  Similarity=0.197  Sum_probs=69.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chh--hhh----hhcccC---------CceEEEEecCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TAD----ISHMDT---------NAVVRGFLGQQ  106 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~--~~D----L~~~~~---------~~~v~~~~~t~  106 (305)
                      +.+||+|||+ |.+|+.+|..++..|+  +|+++|+++.   .+.  ..+    +.....         ..+++.   ++
T Consensus       313 ~i~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~  386 (715)
T 1wdk_A          313 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TL  386 (715)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ES
T ss_pred             cCCEEEEECC-ChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEE---EC
Confidence            3568999999 9999999999999999  9999999861   111  011    111100         113443   34


Q ss_pred             CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCc
Q 021932          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNS  168 (305)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~  168 (305)
                      |+ +++++||+||++..              ++..+.+++..++.+++ |++++  +||-..+
T Consensus       387 d~-~~~~~aDlVIeaV~--------------e~~~vk~~v~~~l~~~~~~~~Il--asntStl  432 (715)
T 1wdk_A          387 SY-GDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDAIL--ASNTSTI  432 (715)
T ss_dssp             SS-TTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSS
T ss_pred             CH-HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCC
Confidence            66 78999999999862              24566778888888887 56655  5665544

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.09  E-value=4e-06  Score=77.97  Aligned_cols=96  Identities=21%  Similarity=0.294  Sum_probs=65.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc---------CCceEEEEecCCCHHHHhCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---------TNAVVRGFLGQQQLEDALTGMD  116 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~---------~~~~v~~~~~t~d~~~al~~aD  116 (305)
                      .|||+|||+ |.+|..++..|...|+  +|.++|+++   ....+....         ....++.   +++. ++++++|
T Consensus         3 ~mkI~IiGa-G~~G~~~a~~L~~~g~--~V~~~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~~D   72 (335)
T 3ghy_A            3 LTRICIVGA-GAVGGYLGARLALAGE--AINVLARGA---TLQALQTAGLRLTEDGATHTLPVRA---THDA-AALGEQD   72 (335)
T ss_dssp             CCCEEEESC-CHHHHHHHHHHHHTTC--CEEEECCHH---HHHHHHHTCEEEEETTEEEEECCEE---ESCH-HHHCCCS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEEChH---HHHHHHHCCCEEecCCCeEEEeeeE---ECCH-HHcCCCC
Confidence            469999999 9999999999999998  999999843   111111110         0011221   2465 4579999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 021932          117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (305)
Q Consensus       117 iVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd  167 (305)
                      +||++..                ...+.++++.+..+- |+.+|+.+.|.++
T Consensus        73 ~Vilavk----------------~~~~~~~~~~l~~~l~~~~~iv~~~nGi~  108 (335)
T 3ghy_A           73 VVIVAVK----------------APALESVAAGIAPLIGPGTCVVVAMNGVP  108 (335)
T ss_dssp             EEEECCC----------------HHHHHHHHGGGSSSCCTTCEEEECCSSSC
T ss_pred             EEEEeCC----------------chhHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            9999862                123556666776654 7888888899953

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.09  E-value=1.3e-05  Score=71.27  Aligned_cols=102  Identities=18%  Similarity=0.158  Sum_probs=64.0

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hh----------hhhhhcccCCceEEEEecCCCHH
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GV----------TADISHMDTNAVVRGFLGQQQLE  109 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~----------~~DL~~~~~~~~v~~~~~t~d~~  109 (305)
                      .+...+||+|||+ |.+|..++..|+..|+  +|.++|+++..  ..          ..++...  ......    .+.+
T Consensus        15 ~~~~~~kIgiIG~-G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~   85 (245)
T 3dtt_A           15 LYFQGMKIAVLGT-GTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPE--HPHVHL----AAFA   85 (245)
T ss_dssp             ----CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGG--STTCEE----EEHH
T ss_pred             cccCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhh--cCceec----cCHH
Confidence            4555679999998 9999999999999998  99999987522  00          1122211  111221    2467


Q ss_pred             HHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       110 ~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                      +++++||+||++....    .        -.+.+.++.   ...-++.+|+.++||.+
T Consensus        86 e~~~~aDvVilavp~~----~--------~~~~~~~i~---~~~l~g~ivi~~s~~~~  128 (245)
T 3dtt_A           86 DVAAGAELVVNATEGA----S--------SIAALTAAG---AENLAGKILVDIANPLD  128 (245)
T ss_dssp             HHHHHCSEEEECSCGG----G--------HHHHHHHHC---HHHHTTSEEEECCCCEE
T ss_pred             HHHhcCCEEEEccCcH----H--------HHHHHHHhh---hhhcCCCEEEECCCCCC
Confidence            8899999999986321    1        112333331   22227889999999873

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.08  E-value=2.7e-06  Score=75.84  Aligned_cols=92  Identities=17%  Similarity=0.261  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~--~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ++|||+|||+ |.+|+.++..|...|+.  .+|.++|+++..       .     .+..   .++.+++++++|+||++.
T Consensus         3 ~~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-------~-----g~~~---~~~~~~~~~~~D~vi~~v   66 (262)
T 2rcy_A            3 ENIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKKN-------T-----TLNY---MSSNEELARHCDIIVCAV   66 (262)
T ss_dssp             SSSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-------S-----SSEE---CSCHHHHHHHCSEEEECS
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-------C-----ceEE---eCCHHHHHhcCCEEEEEe
Confidence            3579999999 99999999999887731  389999987632       1     1221   235668889999999996


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~  168 (305)
                      . +   .            .+.++++.+..+.++.+++..+|.++.
T Consensus        67 ~-~---~------------~~~~v~~~l~~~l~~~~vv~~~~gi~~   96 (262)
T 2rcy_A           67 K-P---D------------IAGSVLNNIKPYLSSKLLISICGGLNI   96 (262)
T ss_dssp             C-T---T------------THHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred             C-H---H------------HHHHHHHHHHHhcCCCEEEEECCCCCH
Confidence            3 1   1            144555666666677888888888875

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=98.07  E-value=1.1e-05  Score=74.71  Aligned_cols=113  Identities=19%  Similarity=0.166  Sum_probs=73.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecC-C---CHHHHhCC--CCE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQ-Q---QLEDALTG--MDI  117 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t-~---d~~~al~~--aDi  117 (305)
                      .++|.|+||+|++|++++..|+..|+  +|+++|++..  ......+..   ...+..+.+. .   ++.+++++  .|+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   83 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREFQPEI   83 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhcc---CCceEEEEccccCHHHHHHHHHhcCCCE
Confidence            46999999999999999999999998  9999998652  111111111   1122222111 1   24455665  899


Q ss_pred             EEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          118 VIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       118 VIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ||.+||.+...  .....+.+..|+.....+++.+.+.+....++.+|
T Consensus        84 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S  131 (357)
T 1rkx_A           84 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  131 (357)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             EEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEec
Confidence            99999864211  11234567889999999999998876333444444

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.07  E-value=1.3e-05  Score=69.59  Aligned_cols=77  Identities=26%  Similarity=0.365  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ..+||+|||+ |.+|+.++..|...|+  +|.++|+++.                           ++++||+||++.. 
T Consensus        18 ~~~~I~iiG~-G~mG~~la~~l~~~g~--~V~~~~~~~~---------------------------~~~~aD~vi~av~-   66 (209)
T 2raf_A           18 QGMEITIFGK-GNMGQAIGHNFEIAGH--EVTYYGSKDQ---------------------------ATTLGEIVIMAVP-   66 (209)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCC---------------------------CSSCCSEEEECSC-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCHH---------------------------HhccCCEEEEcCC-
Confidence            3569999998 9999999999999998  9999997542                           3578999999863 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                      +               ..++++++.+.++.++.+++.++|+.+
T Consensus        67 ~---------------~~~~~v~~~l~~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           67 Y---------------PALAALAKQYATQLKGKIVVDITNPLN   94 (209)
T ss_dssp             H---------------HHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred             c---------------HHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence            1               123344444444334788888899776

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.07  E-value=7.1e-06  Score=76.95  Aligned_cols=103  Identities=14%  Similarity=0.213  Sum_probs=65.6

Q ss_pred             CCCCCC-EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc----------cCCceEEEEecCCCHHH
Q 021932           42 GGSPGF-KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----------DTNAVVRGFLGQQQLED  110 (305)
Q Consensus        42 ~~~~~~-KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~----------~~~~~v~~~~~t~d~~~  110 (305)
                      ++.++| ||+|||+ |.+|..++..|+..|+  +|.++|+++....  .+.+.          .....+..   ++++++
T Consensus        10 ~~~m~M~kI~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~   81 (366)
T 1evy_A           10 DELLYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVR--LVNEKRENVLFLKGVQLASNITF---TSDVEK   81 (366)
T ss_dssp             CCCCCEEEEEEECC-SHHHHHHHHHHTTTEE--EEEEECSCHHHHH--HHHHHTBCTTTSTTCBCCTTEEE---ESCHHH
T ss_pred             hHhhccCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHcCcccccccccccccceee---eCCHHH
Confidence            445545 9999999 9999999999998887  9999998752111  11110          00112443   246778


Q ss_pred             HhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHH----HHHhC-C-CcEEEEecCCCCc
Q 021932          111 ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEG----IAKCC-P-KAIVNLISNPVNS  168 (305)
Q Consensus       111 al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~----I~~~~-p-~aiviv~tNPvd~  168 (305)
                      +++++|+||++...                ..+.++++.    +..+. | +.+|+.++|-++.
T Consensus        82 ~~~~aDvVilav~~----------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           82 AYNGAEIILFVIPT----------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HHTTCSSEEECCCH----------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HHcCCCEEEECCCh----------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            89999999998621                123344444    44332 5 6777778876543

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=98.06  E-value=6.9e-06  Score=76.45  Aligned_cols=113  Identities=17%  Similarity=0.235  Sum_probs=76.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCCch--hhhhhhcccCCceEEEEecC----CCHHHHhCCCCEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQ----QQLEDALTGMDIV  118 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~~g--~~~DL~~~~~~~~v~~~~~t----~d~~~al~~aDiV  118 (305)
                      .++|.|+||+|++|+.++..|+.. |. .+|+++|+++...  ...++..    ..++.+.+.    ..+.+++++.|+|
T Consensus        21 ~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~l~~~~~~~D~V   95 (344)
T 2gn4_A           21 NQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDELKQSEMAMEFND----PRMRFFIGDVRDLERLNYALEGVDIC   95 (344)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHHHHHHHHHHHCC----TTEEEEECCTTCHHHHHHHTTTCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChhhHHHHHHHhcC----CCEEEEECCCCCHHHHHHHHhcCCEE
Confidence            469999999999999999999887 64 3899999875211  1112221    223332211    2345678899999


Q ss_pred             EEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          119 IIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       119 Ii~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |.+||....+.  ....+.+..|+.....+++...+.+...+|.+.|
T Consensus        96 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS  142 (344)
T 2gn4_A           96 IHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALST  142 (344)
T ss_dssp             EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             EECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence            99998653211  1235678889999999999999887555555544

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=98.06  E-value=1.7e-05  Score=72.73  Aligned_cols=105  Identities=19%  Similarity=0.202  Sum_probs=70.2

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCC-------CCcEEEEEeCCCCchhhhhhhcccCCceEEEEec----CCCHHH
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLED  110 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~-------~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~~  110 (305)
                      .+.+.|+|.|+||+|++|++++..|+..|       .  +|+++|++......  .    ....+..+.+    ..++++
T Consensus        10 ~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~--~V~~~~r~~~~~~~--~----~~~~~~~~~~Dl~d~~~~~~   81 (342)
T 2hrz_A           10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVE--KFTLIDVFQPEAPA--G----FSGAVDARAADLSAPGEAEK   81 (342)
T ss_dssp             SCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEE--EEEEEESSCCCCCT--T----CCSEEEEEECCTTSTTHHHH
T ss_pred             CCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCc--eEEEEEccCCcccc--c----cCCceeEEEcCCCCHHHHHH
Confidence            34456799999999999999999999888       5  89999986521111  0    0122322211    123445


Q ss_pred             Hh-CCCCEEEEcCCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHhC
Q 021932          111 AL-TGMDIVIIPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCC  154 (305)
Q Consensus       111 al-~~aDiVIi~ag~~~~~-g~~r~d~~~~N~~i~~~i~~~I~~~~  154 (305)
                      ++ .++|+||.+||..... ..+..+.+..|+.....+++.+.+..
T Consensus        82 ~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~  127 (342)
T 2hrz_A           82 LVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIAN  127 (342)
T ss_dssp             HHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence            66 4899999999864210 11234567789999999999888775

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.06  E-value=1.2e-05  Score=75.90  Aligned_cols=101  Identities=11%  Similarity=0.166  Sum_probs=68.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC-------CCcEEEEEeCCCC-c--hhhhhhhccc----------CCceEEEEecC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNT-P--GVTADISHMD----------TNAVVRGFLGQ  105 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~-------~~~el~L~D~~~~-~--g~~~DL~~~~----------~~~~v~~~~~t  105 (305)
                      ++||+|||+ |.+|+.++..|+..|       +  +|.++|+++. .  ..+..+....          ....+..   +
T Consensus        21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~---~   94 (375)
T 1yj8_A           21 PLKISILGS-GNWASAISKVVGTNAKNNYLFEN--EVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVA---H   94 (375)
T ss_dssp             CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCS--CEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEE---E
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCC--eEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEE---E
Confidence            468999998 999999999998877       5  8999998753 0  0222222110          0112443   2


Q ss_pred             CCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHH----hC-CCcEEEEecCCCCc
Q 021932          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK----CC-PKAIVNLISNPVNS  168 (305)
Q Consensus       106 ~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~----~~-p~aiviv~tNPvd~  168 (305)
                      +|.+++++++|+||++..                ...+.++++.+..    +. |+.+++.++|-++.
T Consensus        95 ~~~~ea~~~aDvVilav~----------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~  146 (375)
T 1yj8_A           95 SDLASVINDADLLIFIVP----------------CQYLESVLASIKESESIKIASHAKAISLTKGFIV  146 (375)
T ss_dssp             SSTHHHHTTCSEEEECCC----------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred             CCHHHHHcCCCEEEEcCC----------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence            466788999999999852                1346677777876    54 67888888886543

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.05  E-value=2.6e-06  Score=79.54  Aligned_cols=93  Identities=19%  Similarity=0.226  Sum_probs=68.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      |||.|+||+|++|++++..|+..|.. +|+.+|++         .            ...+++++++++|+||.+|+...
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~-~v~~~d~~---------~------------d~~~l~~~~~~~d~Vih~a~~~~   58 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDH-HIFEVHRQ---------T------------KEEELESALLKADFIVHLAGVNR   58 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEECCTT---------C------------CHHHHHHHHHHCSEEEECCCSBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC-EEEEECCC---------C------------CHHHHHHHhccCCEEEECCcCCC
Confidence            68999999999999999999888753 78888874         0            01235677889999999998654


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .  ....+.+..|+...+.+++.+++.+....++.+|
T Consensus        59 ~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S   93 (369)
T 3st7_A           59 P--EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSS   93 (369)
T ss_dssp             T--TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             C--CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence            2  2233455668888999999998887654444443

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=98.05  E-value=8.5e-06  Score=76.50  Aligned_cols=118  Identities=14%  Similarity=0.089  Sum_probs=72.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch------------------hhhhhhcccCCceEEEEec
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG------------------VTADISHMDTNAVVRGFLG  104 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g------------------~~~DL~~~~~~~~v~~~~~  104 (305)
                      ..+.++|.|+||+|++|++++..|+..|+  +|+++|+.....                  ...++.... ...+..+.+
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~   84 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVG   84 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEES
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEEC
Confidence            44567999999999999999999999998  999999753110                  011111100 122332221


Q ss_pred             C-C---CHHHHhCC--CCEEEEcCCCCCCC--CCch---hhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          105 Q-Q---QLEDALTG--MDIVIIPAGVPRKP--GMTR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       105 t-~---d~~~al~~--aDiVIi~ag~~~~~--g~~r---~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      . .   ++.+++++  +|+||.+||.....  ..+.   ...+..|+.....+++.+.+.+....++.+|
T Consensus        85 Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~S  154 (404)
T 1i24_A           85 DICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLG  154 (404)
T ss_dssp             CTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             CCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            1 2   24456676  99999999864211  0111   2356789999999999999887533444444

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=98.04  E-value=6.7e-06  Score=74.01  Aligned_cols=99  Identities=16%  Similarity=0.170  Sum_probs=70.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCC--CCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG--MDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~--aDiVIi~ag~  124 (305)
                      |||.|+||+|++|++++..|+ .|+  +|+.+|++.. ....|+.+.            .++.+++++  +|+||.+|+.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~--~V~~~~r~~~-~~~~D~~d~------------~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG--NLIALDVHSK-EFCGDFSNP------------KGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS--EEEEECTTCS-SSCCCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC--eEEEeccccc-cccccCCCH------------HHHHHHHHhcCCCEEEECccc
Confidence            589999999999999999998 787  9999998651 111233221            134566765  9999999986


Q ss_pred             CCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          125 PRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       125 ~~~--~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ...  ...+..+.+..|+.....+++.+.+.+.  .++.+|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  103 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Confidence            431  1134456778899999999999987764  344443

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.04  E-value=1.3e-05  Score=74.03  Aligned_cols=121  Identities=13%  Similarity=0.130  Sum_probs=72.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhh----hhcccCCceEEE--EecCCCHHHHhCCCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD----ISHMDTNAVVRG--FLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~D----L~~~~~~~~v~~--~~~t~d~~~al~~aDiVI  119 (305)
                      +|||+|||+ |.+|..++..|...|+  +|.++|+++. ....+    +... .......  ...+++.+++.+++|+||
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~-~~i~~~Gl~~~~~-~~g~~~~~~~~~~~~~~~~~~~~DlVi   76 (320)
T 3i83_A            2 SLNILVIGT-GAIGSFYGALLAKTGH--CVSVVSRSDY-ETVKAKGIRIRSA-TLGDYTFRPAAVVRSAAELETKPDCTL   76 (320)
T ss_dssp             -CEEEEESC-CHHHHHHHHHHHHTTC--EEEEECSTTH-HHHHHHCEEEEET-TTCCEEECCSCEESCGGGCSSCCSEEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCChH-HHHHhCCcEEeec-CCCcEEEeeeeeECCHHHcCCCCCEEE
Confidence            479999999 9999999999999997  9999998752 11110    1110 0111111  111235545445999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE-eeeh
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG-VTML  194 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG-~t~L  194 (305)
                      ++.-..    .            +.++++.+..+- ++.+|+.+.|-++..-.     +++.  +|.++|++ ++..
T Consensus        77 lavK~~----~------------~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~-----l~~~--~~~~~vl~g~~~~  130 (320)
T 3i83_A           77 LCIKVV----E------------GADRVGLLRDAVAPDTGIVLISNGIDIEPE-----VAAA--FPDNEVISGLAFI  130 (320)
T ss_dssp             ECCCCC----T------------TCCHHHHHTTSCCTTCEEEEECSSSSCSHH-----HHHH--STTSCEEEEEEEE
T ss_pred             EecCCC----C------------hHHHHHHHHhhcCCCCEEEEeCCCCChHHH-----HHHH--CCCCcEEEEEEEe
Confidence            986322    1            112344455444 67888888999886532     2332  56677774 4443

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=98.04  E-value=3.4e-05  Score=67.45  Aligned_cols=102  Identities=19%  Similarity=0.173  Sum_probs=68.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch---hhhhhhcccCCceEEEEecCCCHHHHh----CCCCEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGFLGQQQLEDAL----TGMDIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g---~~~DL~~~~~~~~v~~~~~t~d~~~al----~~aDiVI  119 (305)
                      ++|.|+||+|++|.+++..|+..|.  +|+++|++....   ...|+.+..            ++++++    .+.|+||
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~D~~~~~------------~~~~~~~~~~~~~d~vi   67 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH--TVIGIDRGQADIEADLSTPGGRET------------AVAAVLDRCGGVLDGLV   67 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHHH------------HHHHHHHHHTTCCSEEE
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCChhHccccccCCcccHH------------HHHHHHHHcCCCccEEE
Confidence            4799999999999999999999998  999999875211   122333321            123333    3899999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEec
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLIS  163 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~t  163 (305)
                      .+||.... .....+.+..|+.....+++.+.+.   ...+.++++|
T Consensus        68 ~~Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~s  113 (255)
T 2dkn_A           68 CCAGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVG  113 (255)
T ss_dssp             ECCCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEEC
T ss_pred             ECCCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEe
Confidence            99987542 2234566777887777777766654   2234455554

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=98.04  E-value=1.4e-05  Score=71.81  Aligned_cols=101  Identities=17%  Similarity=0.071  Sum_probs=69.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec----CCCHHHHhCCCCEEEEc
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVIIP  121 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi~  121 (305)
                      |||.|+||+|++|+.++..|... +.  +|++++++....  .++...    .+..+.+    ..++.++++++|+||.+
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~--~~~~~~----~v~~~~~D~~d~~~l~~~~~~~d~vi~~   72 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKV--PDDWRG----KVSVRQLDYFNQESMVEAFKGMDTVVFI   72 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGS--CGGGBT----TBEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHH--HHhhhC----CCEEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            58999999999999999998887 77  889998865211  112111    1221111    12466789999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ++....        ...|+...+.+++.+.+.+..-+|.+.|
T Consensus        73 a~~~~~--------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss  106 (289)
T 3e48_A           73 PSIIHP--------SFKRIPEVENLVYAAKQSGVAHIIFIGY  106 (289)
T ss_dssp             CCCCCS--------HHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCCcc--------chhhHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            875421        1347788899999999887655555544

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.04  E-value=2.1e-05  Score=71.25  Aligned_cols=97  Identities=18%  Similarity=0.258  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      +..+++||+|||++|.+|..++..|...|+  +|+++|+++...  .++....    +..   + +..++++++|+||++
T Consensus         7 ~~~mmm~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~~--~~~~~~g----~~~---~-~~~~~~~~aDvVi~a   74 (286)
T 3c24_A            7 NDVGPKTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEGR--DRLQGMG----IPL---T-DGDGWIDEADVVVLA   74 (286)
T ss_dssp             CSCCCCEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHHH--HHHHHTT----CCC---C-CSSGGGGTCSEEEEC
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHhcC----CCc---C-CHHHHhcCCCEEEEc
Confidence            444467999999779999999999999998  999999865211  1122111    111   1 345778999999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPv  166 (305)
                      ...                ..+.++++.+.+.. |+.+|+..|+..
T Consensus        75 v~~----------------~~~~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           75 LPD----------------NIIEKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             SCH----------------HHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             CCc----------------hHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence            621                11566667777664 677776666543

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.03  E-value=1.3e-05  Score=72.78  Aligned_cols=91  Identities=10%  Similarity=0.159  Sum_probs=62.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      |||+|||+ |.+|..++..|...|+  +|+++|+++...  .++.+.    .+..   .++++++++++|+||++...+ 
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~--~~~~~~----g~~~---~~~~~~~~~~aDvvi~~vp~~-   68 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGC--SVTIWNRSPEKA--EELAAL----GAER---AATPCEVVESCPVTFAMLADP-   68 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGG--HHHHHT----TCEE---CSSHHHHHHHCSEEEECCSSH-
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHC----CCee---cCCHHHHHhcCCEEEEEcCCH-
Confidence            69999998 9999999999999998  999999976221  122221    1222   346788899999999986321 


Q ss_pred             CCCCchhhHHHhhHHHHHHHH---HHHHHhC-CCcEEEEecC
Q 021932          127 KPGMTRDDLFNINAGIVKTLC---EGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~---~~I~~~~-p~aiviv~tN  164 (305)
                                    ..+++++   +.+.+.. ++.+++..|+
T Consensus        69 --------------~~~~~v~~~~~~l~~~l~~~~~vi~~st   96 (287)
T 3pef_A           69 --------------AAAEEVCFGKHGVLEGIGEGRGYVDMST   96 (287)
T ss_dssp             --------------HHHHHHHHSTTCHHHHCCTTCEEEECSC
T ss_pred             --------------HHHHHHHcCcchHhhcCCCCCEEEeCCC
Confidence                          2244444   5555554 5666666553

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.02  E-value=1.8e-05  Score=71.13  Aligned_cols=101  Identities=18%  Similarity=0.190  Sum_probs=65.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCC-ceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTN-AVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~-~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      |||+|||+ |.+|+.++..|...|+  +|.++|+++.....+........ ......  .++ .++++++|+||++....
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~--~~~-~~~~~~~d~vi~~v~~~   74 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNESLT--AND-PDFLATSDLLLVTLKAW   74 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEEEEE--ESC-HHHHHTCSEEEECSCGG
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCccceeeEEEEcCCCceeeeeee--ecC-ccccCCCCEEEEEecHH
Confidence            58999999 9999999999999998  99999987621111111110000 011111  124 46789999999986321


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST  169 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~l  169 (305)
                                      .+.++++.+.++. |+.+|+..+|..+..
T Consensus        75 ----------------~~~~v~~~l~~~l~~~~~vv~~~~g~~~~  103 (291)
T 1ks9_A           75 ----------------QVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (291)
T ss_dssp             ----------------GHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             ----------------hHHHHHHHHHhhCCCCCEEEEecCCCCcH
Confidence                            0345556666654 678888889987653

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.02  E-value=1.7e-05  Score=72.56  Aligned_cols=91  Identities=19%  Similarity=0.302  Sum_probs=61.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      .+||+|||+ |.+|..++..|+..|+  +|+++|+++.+..  .+....    ++.   .++++++++ +|+||++...+
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~-aDvvi~~vp~~   81 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPG--GVTVYDIRIEAMT--PLAEAG----ATL---ADSVADVAA-ADLIHITVLDD   81 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTT--CEEEECSSTTTSH--HHHHTT----CEE---CSSHHHHTT-SSEEEECCSSH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----CEE---cCCHHHHHh-CCEEEEECCCh
Confidence            469999998 9999999999999998  9999999763211  122211    222   346778888 99999986321


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                                     ..++++++.+.+.. |+.+++..|+
T Consensus        82 ---------------~~~~~v~~~l~~~l~~g~ivv~~st  106 (296)
T 3qha_A           82 ---------------AQVREVVGELAGHAKPGTVIAIHST  106 (296)
T ss_dssp             ---------------HHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred             ---------------HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence                           22445556666655 5666665553

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=98.00  E-value=3.3e-06  Score=75.86  Aligned_cols=105  Identities=10%  Similarity=0.054  Sum_probs=67.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCC-CCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTG-MDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~-aDiVIi~ag  123 (305)
                      +|||.|+|+ |++|+.++..|+..|+  +|+.++++...     +...  ...+.. +....++.+++++ +|+||.+|+
T Consensus         3 ~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~~~~--~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            3 LSKILIAGC-GDLGLELARRLTAQGH--EVTGLRRSAQP-----MPAG--VQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECTTSC-----CCTT--CCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCccc-----cccC--CceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            468999996 9999999999999998  99999987521     0000  000110 0001123456666 999999987


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ...   .+..+.+..|+...+.+++.+.+.+..-+|.+.|
T Consensus        73 ~~~---~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS  109 (286)
T 3gpi_A           73 ASE---YSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSS  109 (286)
T ss_dssp             HHH---HC-----CCSHHHHHHHHHHTTTSCCCEEEEEEE
T ss_pred             CCC---CCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcc
Confidence            532   1233456679999999999998766555554444

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.00  E-value=1.6e-05  Score=73.44  Aligned_cols=112  Identities=17%  Similarity=0.233  Sum_probs=71.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc-----cC----CceEEEEecCCCHHHHhCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DT----NAVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~-----~~----~~~v~~~~~t~d~~~al~~a  115 (305)
                      .++||+|||+ |.+|..+|..|+..|+  +|.++ .++...  ..+...     ..    ...+..   +++. ++++++
T Consensus        18 ~~~kI~IiGa-Ga~G~~~a~~L~~~G~--~V~l~-~~~~~~--~~i~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~~   87 (318)
T 3hwr_A           18 QGMKVAIMGA-GAVGCYYGGMLARAGH--EVILI-ARPQHV--QAIEATGLRLETQSFDEQVKVSA---SSDP-SAVQGA   87 (318)
T ss_dssp             --CEEEEESC-SHHHHHHHHHHHHTTC--EEEEE-CCHHHH--HHHHHHCEEEECSSCEEEECCEE---ESCG-GGGTTC
T ss_pred             cCCcEEEECc-CHHHHHHHHHHHHCCC--eEEEE-EcHhHH--HHHHhCCeEEEcCCCcEEEeeee---eCCH-HHcCCC
Confidence            4569999999 9999999999999998  99999 654111  111110     00    011222   2455 557999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 021932          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG  190 (305)
                      |+||++....                .+.++++.+..+. |+.+|+.++|.++....     +.+.  +| +++++
T Consensus        88 D~vilavk~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~-----l~~~--~~-~~vl~  139 (318)
T 3hwr_A           88 DLVLFCVKST----------------DTQSAALAMKPALAKSALVLSLQNGVENADT-----LRSL--LE-QEVAA  139 (318)
T ss_dssp             SEEEECCCGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSSHHHH-----HHHH--CC-SEEEE
T ss_pred             CEEEEEcccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCCcHHH-----HHHH--cC-CcEEE
Confidence            9999986211                1356667777665 67888889999986532     2332  55 67774

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=98.00  E-value=1.8e-05  Score=71.05  Aligned_cols=105  Identities=13%  Similarity=0.114  Sum_probs=68.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCC--CCEEEEc
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG--MDIVIIP  121 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~--aDiVIi~  121 (305)
                      .++|||.|+||+|++|++++..|+..|.........   ..-...|+.+.            .++.+++++  +|+||.+
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~---~~~~~~D~~d~------------~~~~~~~~~~~~d~Vih~   68 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVF---VSSKDADLTDT------------AQTRALFEKVQPTHVIHL   68 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEE---CCTTTCCTTSH------------HHHHHHHHHSCCSEEEEC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCCcccccccc---cCceecccCCH------------HHHHHHHhhcCCCEEEEC
Confidence            356799999999999999999999888610000000   01111233221            134566666  9999999


Q ss_pred             CCCCCC---CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          122 AGVPRK---PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       122 ag~~~~---~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |+....   ......+.+..|+.....+++.+.+.+.+-+|.+.|
T Consensus        69 A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS  113 (319)
T 4b8w_A           69 AAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLS  113 (319)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             ceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcc
Confidence            986421   113345678899999999999999887655554443

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.99  E-value=3.2e-05  Score=69.79  Aligned_cols=142  Identities=20%  Similarity=0.190  Sum_probs=77.7

Q ss_pred             hhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC
Q 021932           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT   95 (305)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~   95 (305)
                      |-++++++.-.++.+|..+......+.+.+++.|+||+|.+|..++..|++.|.  +|++.|+++  ......++.... 
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~-   81 (275)
T 4imr_A            5 HHHSSGVDLGTENLYFQSMRLETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASG-   81 (275)
T ss_dssp             -------------CCSCTTSHHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTT-
T ss_pred             cccccccCccccccccccccccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC-
Confidence            345677888777778887765544455566899999999999999999999998  899999976  222333343321 


Q ss_pred             CceEEEEec----CCCHHHHh------CCCCEEEEcCCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCC
Q 021932           96 NAVVRGFLG----QQQLEDAL------TGMDIVIIPAGVPRKPG---MTR---DDLFNINAG----IVKTLCEGIAKCCP  155 (305)
Q Consensus        96 ~~~v~~~~~----t~d~~~al------~~aDiVIi~ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p  155 (305)
                       ..+..+..    ..+.++.+      ...|++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+.. 
T Consensus        82 -~~~~~~~~Dv~~~~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-  159 (275)
T 4imr_A           82 -GTAQELAGDLSEAGAGTDLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARK-  159 (275)
T ss_dssp             -CCEEEEECCTTSTTHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-
T ss_pred             -CeEEEEEecCCCHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-
Confidence             22222211    11222222      37899999999643221   122   234555654    4445555555543 


Q ss_pred             CcEEEEecC
Q 021932          156 KAIVNLISN  164 (305)
Q Consensus       156 ~aiviv~tN  164 (305)
                      .+.|+++|.
T Consensus       160 ~g~Iv~isS  168 (275)
T 4imr_A          160 WGRVVSIGS  168 (275)
T ss_dssp             CEEEEEECC
T ss_pred             CcEEEEECC
Confidence            455666653

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=97.99  E-value=2.8e-05  Score=71.18  Aligned_cols=114  Identities=18%  Similarity=0.160  Sum_probs=72.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHhC--CCCEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT--GMDIV  118 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~--~aDiV  118 (305)
                      |||.|+||+|++|++++..|+..|+  +|+++|...  ......++.... ...+..+.+ -+|   +.++++  +.|+|
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~D~v   77 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCHHHHHHHhhccCCCEE
Confidence            5899999999999999999999998  999998643  111111222110 111222111 122   334454  58999


Q ss_pred             EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       119 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |.+||.....  .....+.+..|+.....+++.+.+.+...+|.+.|
T Consensus        78 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS  124 (338)
T 1udb_A           78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSS  124 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence            9999854210  01234567889999999999998876555554444

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.97  E-value=1.3e-05  Score=73.74  Aligned_cols=115  Identities=16%  Similarity=0.208  Sum_probs=71.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc-----CCceEEE--EecCCCHHHHhCCCCEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TNAVVRG--FLGQQQLEDALTGMDIV  118 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~-----~~~~v~~--~~~t~d~~~al~~aDiV  118 (305)
                      +|||+|||+ |.+|..++..|...|+  +|.++|+++.  .  .+....     .......  ...+++. ++++++|+|
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~--~--~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~v   73 (312)
T 3hn2_A            2 SLRIAIVGA-GALGLYYGALLQRSGE--DVHFLLRRDY--E--AIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDLV   73 (312)
T ss_dssp             --CEEEECC-STTHHHHHHHHHHTSC--CEEEECSTTH--H--HHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEEcCcH--H--HHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCEE
Confidence            469999999 9999999999999987  9999998652  1  111110     0111110  1112354 557999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       119 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      |++.-    +..            +.++++.++.+- |+.+|+.+.|-++....     +.+.  +|..+|++-
T Consensus        74 ilavk----~~~------------~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~-----l~~~--~~~~~v~~~  124 (312)
T 3hn2_A           74 LVGLK----TFA------------NSRYEELIRPLVEEGTQILTLQNGLGNEEA-----LATL--FGAERIIGG  124 (312)
T ss_dssp             EECCC----GGG------------GGGHHHHHGGGCCTTCEEEECCSSSSHHHH-----HHHH--TCGGGEEEE
T ss_pred             EEecC----CCC------------cHHHHHHHHhhcCCCCEEEEecCCCCcHHH-----HHHH--CCCCcEEEE
Confidence            99862    111            234555666554 78888888999875432     2332  666777754

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=97.96  E-value=1.7e-05  Score=71.99  Aligned_cols=112  Identities=18%  Similarity=0.081  Sum_probs=71.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhC--CCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALT--GMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~--~aDiVIi~ag  123 (305)
                      |||.|+||+|++|++++..|+..|+  +|+++|..... ....+...  ...+.. +....+++++++  ++|+||.+++
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~~~~~~~--~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   75 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL--EVAVLDNLATG-KRENVPKG--VPFFRVDLRDKEGVERAFREFRPTHVSHQAA   75 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEECCCSSC-CGGGSCTT--CCEECCCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCCcC-chhhcccC--eEEEECCCCCHHHHHHHHHhcCCCEEEECcc
Confidence            5899999999999999999999998  99999874311 11111110  000110 000112445666  8999999998


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          124 VPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       124 ~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .....  ..+....+..|+.....+++.+.+.+...+|.+.|
T Consensus        76 ~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS  117 (311)
T 2p5y_A           76 QASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFAST  117 (311)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            54210  01234567789999999999998876555554443

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.96  E-value=2.5e-05  Score=72.83  Aligned_cols=115  Identities=10%  Similarity=0.013  Sum_probs=71.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc---hhhhhhhccc---CCceEEEEecC-C---CHHHHhCC--
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD---TNAVVRGFLGQ-Q---QLEDALTG--  114 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~---g~~~DL~~~~---~~~~v~~~~~t-~---d~~~al~~--  114 (305)
                      ++|.|+||+|++|++++..|+..|.  +|+++|++...   ....++....   ....+..+.+. .   ++.+++++  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  102 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK  102 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence            6899999999999999999999997  99999986521   1111121100   01223332211 2   23445554  


Q ss_pred             CCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCC--cEEEEec
Q 021932          115 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPK--AIVNLIS  163 (305)
Q Consensus       115 aDiVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~--aiviv~t  163 (305)
                      .|+||.+||.....  ..+..+.+..|+.....+++.+.+...+  ..|+.+|
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~S  155 (375)
T 1t2a_A          103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS  155 (375)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence            59999999864211  0123456778999999999999887641  3444443

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.94  E-value=1.7e-05  Score=71.64  Aligned_cols=105  Identities=17%  Similarity=0.094  Sum_probs=68.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +++|.|+||+|++|+.++..|+..| +  +|++++++.......++.... ...+.. +....++.++++++|+||.+++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~~~l~~~~-~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAAKELRLQG-AEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHHHHHHHTT-CEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHHHHHHHCC-CEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            3689999999999999999998877 6  999999876332222232211 011111 1111245678899999999987


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEE
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV  159 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiv  159 (305)
                      .....      ....|+...+.+++.+.+.+..-+|
T Consensus        82 ~~~~~------~~~~~~~~~~~~~~aa~~~gv~~iv  111 (299)
T 2wm3_A           82 YWESC------SQEQEVKQGKLLADLARRLGLHYVV  111 (299)
T ss_dssp             HHHHT------CHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred             CCccc------cchHHHHHHHHHHHHHHHcCCCEEE
Confidence            42111      1345777888899988887654444

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=97.93  E-value=5.5e-05  Score=70.82  Aligned_cols=115  Identities=17%  Similarity=0.107  Sum_probs=74.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCCc---------hhhh-h-hhcccC---Cce---EEEEecC-C-
Q 021932           47 FKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTP---------GVTA-D-ISHMDT---NAV---VRGFLGQ-Q-  106 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~-~~~~~~el~L~D~~~~~---------g~~~-D-L~~~~~---~~~---v~~~~~t-~-  106 (305)
                      |||.|+||+|++|++++..|+ ..|+  +|+++|+....         ...+ + +.....   ...   +..+.+. + 
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   80 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence            599999999999999999999 8887  99999986421         1111 1 111100   011   3332211 2 


Q ss_pred             --CHHHHhC--C-CCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          107 --QLEDALT--G-MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       107 --d~~~al~--~-aDiVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                        ++.++++  + +|+||.+|+.....  .....+++..|+.....+++.+.+.....+|.+.|
T Consensus        81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS  144 (397)
T 1gy8_A           81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSS  144 (397)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECC
Confidence              2345565  6 99999999864211  12345577889999999999998876555555444

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=97.93  E-value=6.1e-05  Score=69.79  Aligned_cols=116  Identities=16%  Similarity=0.026  Sum_probs=70.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc---hhhhhhhccc--CCceEEEEecC-C---CHHHHhCC--
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD--TNAVVRGFLGQ-Q---QLEDALTG--  114 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~---g~~~DL~~~~--~~~~v~~~~~t-~---d~~~al~~--  114 (305)
                      +++|.|+||+|++|++++..|+..|.  +|+++|++...   ....++....  ....+..+.+. +   ++.+++++  
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   78 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQ   78 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcC
Confidence            35899999999999999999999997  99999986421   1111111100  01223332111 1   23445554  


Q ss_pred             CCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCC--cEEEEec
Q 021932          115 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPK--AIVNLIS  163 (305)
Q Consensus       115 aDiVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~--aiviv~t  163 (305)
                      .|+||.+||.....  ..+....+..|+.....+++.+.+...+  ..++.+|
T Consensus        79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~S  131 (372)
T 1db3_A           79 PDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS  131 (372)
T ss_dssp             CSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence            69999999864321  1234456778999999999999887652  4444443

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=97.93  E-value=6e-06  Score=74.65  Aligned_cols=109  Identities=14%  Similarity=0.070  Sum_probs=71.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhC--CCCEEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALT--GMDIVII  120 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~--~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~--~aDiVIi  120 (305)
                      .+||.|+||+|++|++++..|+..  ++  +|+++|++.....   +...  ...+.. .....+++++++  ++|+||.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~---~~~~--~~~~~~D~~d~~~~~~~~~~~~~d~vih   74 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTE--NVIASDIRKLNTD---VVNS--GPFEVVNALDFNQIEHLVEVHKITDIYL   74 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGG--GEEEEESCCCSCH---HHHS--SCEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCC--EEEEEcCCCcccc---ccCC--CceEEecCCCHHHHHHHHhhcCCCEEEE
Confidence            368999999999999999999887  66  8999998653211   1110  011111 000123445676  8999999


Q ss_pred             cCCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 021932          121 PAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (305)
Q Consensus       121 ~ag~~~~~-g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv  161 (305)
                      +|+..... ..+..+.+..|+.....+++.+.+.+...+|.+
T Consensus        75 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~  116 (312)
T 2yy7_A           75 MAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWP  116 (312)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECC
T ss_pred             CCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence            99853211 123455678899999999999988765444433

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.93  E-value=2.1e-05  Score=70.22  Aligned_cols=104  Identities=14%  Similarity=0.140  Sum_probs=69.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~--~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +||.|+||+|++|++++..|+..  |+  +|++++++.....  ++.... ...+.. +....++.++++++|+||.+++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~l~~~~-~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   75 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS--QIIAIVRNVEKAS--TLADQG-VEVRHGDYNQPESLQKAFAGVSKLLFISG   75 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTTH--HHHHTT-CEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC--eEEEEEcCHHHHh--HHhhcC-CeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence            47999999999999999999887  76  8999998652211  122111 011111 1111245678899999999998


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ..  .+  .    ..|+...+.+++.+.+.+..-+|.+.|
T Consensus        76 ~~--~~--~----~~n~~~~~~l~~a~~~~~~~~~v~~Ss  107 (287)
T 2jl1_A           76 PH--YD--N----TLLIVQHANVVKAARDAGVKHIAYTGY  107 (287)
T ss_dssp             CC--SC--H----HHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CC--cC--c----hHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            53  11  1    348888899999998876555555544

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.92  E-value=0.0001  Score=66.01  Aligned_cols=118  Identities=19%  Similarity=0.194  Sum_probs=72.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCCH---HHHh------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQL---EDAL------  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d~---~~al------  112 (305)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++........+..+.. -+|.   ++++      
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ  108 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999998  8999998752  222223322211123332211 1222   2222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCC-CcEEEEecC
Q 021932          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCP-KAIVNLISN  164 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p-~aiviv~tN  164 (305)
                       .+.|+||.+||......   .+   ....+..|+..    .+.+++.+.+... .+.|++++.
T Consensus       109 ~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS  172 (279)
T 1xg5_A          109 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS  172 (279)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence             37999999998643211   11   23455667666    7778888877663 356666653

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.92  E-value=2.2e-05  Score=71.07  Aligned_cols=95  Identities=13%  Similarity=0.089  Sum_probs=61.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      ++||+|||+ |.+|..++..|...+...+|.++|+++...  ..+.......  ..   +++++++++++|+||++... 
T Consensus         6 ~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~--~~~~~~g~~~--~~---~~~~~~~~~~aDvVilavp~-   76 (290)
T 3b1f_A            6 EKTIYIAGL-GLIGASLALGIKRDHPHYKIVGYNRSDRSR--DIALERGIVD--EA---TADFKVFAALADVIILAVPI-   76 (290)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSHHHH--HHHHHTTSCS--EE---ESCTTTTGGGCSEEEECSCH-
T ss_pred             cceEEEEee-CHHHHHHHHHHHhCCCCcEEEEEcCCHHHH--HHHHHcCCcc--cc---cCCHHHhhcCCCEEEEcCCH-
Confidence            569999998 999999999998874333899999875211  1122111101  11   23556778999999998631 


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHh-C-CCcEEEEecC
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKC-C-PKAIVNLISN  164 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~-~-p~aiviv~tN  164 (305)
                                     ....++++.+.++ . ++.+|+.++|
T Consensus        77 ---------------~~~~~v~~~l~~~~l~~~~ivi~~~~  102 (290)
T 3b1f_A           77 ---------------KKTIDFIKILADLDLKEDVIITDAGS  102 (290)
T ss_dssp             ---------------HHHHHHHHHHHTSCCCTTCEEECCCS
T ss_pred             ---------------HHHHHHHHHHHhcCCCCCCEEEECCC
Confidence                           1235666677765 3 6777765555

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.92  E-value=2.8e-05  Score=71.30  Aligned_cols=91  Identities=12%  Similarity=0.101  Sum_probs=49.8

Q ss_pred             hhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCc
Q 021932           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA   97 (305)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~   97 (305)
                      |-|.+|+.|--.-..|.  ..++ +-..++||+|||+ |.+|..++..|...|+  +|.++|+++....  .+....   
T Consensus         5 ~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~I~iIG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g---   73 (316)
T 2uyy_A            5 HHHSSGVDLGTENLYFQ--SMGS-ITPTDKKIGFLGL-GLMGSGIVSNLLKMGH--TVTVWNRTAEKCD--LFIQEG---   73 (316)
T ss_dssp             ----------------------C-CCCCSSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSGGGGH--HHHHTT---
T ss_pred             cccccccCccccceeec--CCCC-CCCCCCeEEEEcc-cHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHHcC---
Confidence            56778876622221221  1122 2223479999998 9999999999998887  8999998752211  122211   


Q ss_pred             eEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           98 VVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        98 ~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                       +..   ..+++++++++|+||++..
T Consensus        74 -~~~---~~~~~~~~~~~DvVi~av~   95 (316)
T 2uyy_A           74 -ARL---GRTPAEVVSTCDITFACVS   95 (316)
T ss_dssp             -CEE---CSCHHHHHHHCSEEEECCS
T ss_pred             -CEE---cCCHHHHHhcCCEEEEeCC
Confidence             121   2356788899999999863

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.91  E-value=5.8e-05  Score=67.95  Aligned_cols=95  Identities=14%  Similarity=0.186  Sum_probs=61.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC-CCCEEEEcCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIPAGVP  125 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~-~aDiVIi~ag~~  125 (305)
                      +||+|||+ |.+|..++..|...|+..+|+++|+++....  .+.......  ..   +++++++++ ++|+||++... 
T Consensus         2 ~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~--~~~~~g~~~--~~---~~~~~~~~~~~aDvVilavp~-   72 (281)
T 2g5c_A            2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESIS--KAVDLGIID--EG---TTSIAKVEDFSPDFVMLSSPV-   72 (281)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHH--HHHHTTSCS--EE---ESCGGGGGGTCCSEEEECSCH-
T ss_pred             cEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCHHHHH--HHHHCCCcc--cc---cCCHHHHhcCCCCEEEEcCCH-
Confidence            59999998 9999999999998886458999998752111  111111111  11   135667888 99999998631 


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNP  165 (305)
                                     ....++++.+..+. ++.+|+.++|.
T Consensus        73 ---------------~~~~~v~~~l~~~l~~~~iv~~~~~~   98 (281)
T 2g5c_A           73 ---------------RTFREIAKKLSYILSEDATVTDQGSV   98 (281)
T ss_dssp             ---------------HHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             ---------------HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence                           11234445555443 67777776654

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=97.91  E-value=3.8e-05  Score=78.01  Aligned_cols=118  Identities=19%  Similarity=0.073  Sum_probs=74.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-C---CCHHHHhC--C
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-Q---QQLEDALT--G  114 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t---~d~~~al~--~  114 (305)
                      ..+.+||.|+||+|++|++++..|+..|.  +|+++|+...  .....++.... ...+..+.+ -   .+++++++  +
T Consensus         8 ~~~~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~~   84 (699)
T 1z45_A            8 ESTSKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEYK   84 (699)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHSC
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCcchHHHHHHHhhcc-CCceEEEEcCCCCHHHHHHHHHhCC
Confidence            34457999999999999999999999997  9999998652  11111222110 111211111 1   13445666  8


Q ss_pred             CCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          115 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       115 aDiVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +|+||.+|+.....  .....+.+..|+.....+++.+.+.....+|.+.|
T Consensus        85 ~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS  135 (699)
T 1z45_A           85 IDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  135 (699)
T ss_dssp             CCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             CCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECc
Confidence            99999999864211  01234567889999999999998876555555444

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.90  E-value=1.9e-05  Score=72.34  Aligned_cols=68  Identities=18%  Similarity=0.139  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +++||+|||+ |.+|..++..|+..|+  +|.++|+++..  ...+....  ... .   .+++++++++||+||++..
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~--~~~~~~~g--~~~-~---~~~~~e~~~~aDvvi~~vp   73 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRAGL--STWGADLNPQA--CANLLAEG--ACG-A---AASAREFAGVVDALVILVV   73 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTT--CSE-E---ESSSTTTTTTCSEEEECCS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHcC--Ccc-c---cCCHHHHHhcCCEEEEECC
Confidence            4579999998 9999999999999998  99999987521  12222221  111 1   1345688899999999864

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.90  E-value=1.8e-05  Score=73.36  Aligned_cols=100  Identities=20%  Similarity=0.219  Sum_probs=63.4

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc---CCc----eEEEEecCCCHHHHhCC
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---TNA----VVRGFLGQQQLEDALTG  114 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~---~~~----~v~~~~~t~d~~~al~~  114 (305)
                      +..+++||+|||+ |.+|+.++..|+..|+  +|.++|+++.+  +..+....   ..+    .+..   +++.++ +++
T Consensus        10 ~~~~~~kI~iIG~-G~mG~ala~~L~~~G~--~V~~~~r~~~~--~~~l~~~g~~~~~~~~~~~~~~---~~~~~~-~~~   80 (335)
T 1z82_A           10 HHHMEMRFFVLGA-GSWGTVFAQMLHENGE--EVILWARRKEI--VDLINVSHTSPYVEESKITVRA---TNDLEE-IKK   80 (335)
T ss_dssp             ----CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHHHSCBTTBTTCCCCSEE---ESCGGG-CCT
T ss_pred             ccccCCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHhCCcccCCCCeeeEEE---eCCHHH-hcC
Confidence            3456789999999 9999999999999998  99999986421  11122111   000    2332   235556 899


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 021932          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (305)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~  168 (305)
                      +|+||++...                ..+.++++.+..  ++.+++.++|.++.
T Consensus        81 aDvVil~vk~----------------~~~~~v~~~l~~--~~~~vv~~~nGi~~  116 (335)
T 1z82_A           81 EDILVIAIPV----------------QYIREHLLRLPV--KPSMVLNLSKGIEI  116 (335)
T ss_dssp             TEEEEECSCG----------------GGHHHHHTTCSS--CCSEEEECCCCCCT
T ss_pred             CCEEEEECCH----------------HHHHHHHHHhCc--CCCEEEEEeCCCCC
Confidence            9999998631                113444444443  67788888887553

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.90  E-value=2.6e-05  Score=68.29  Aligned_cols=99  Identities=18%  Similarity=0.190  Sum_probs=63.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCchhhhhhhcccCCceEEEEec----CCCHHHHhCCCCEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVI  119 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDiVI  119 (305)
                      ++++|.|+||+|++|..++..|+..| .  +|+++++++...  .++..    ..+..+..    ..+++++++++|+||
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~~--~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~D~vv   93 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAKI--HKPYP----TNSQIIMGDVLNHAALKQAMQGQDIVY   93 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGGS--CSSCC----TTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhhh--ccccc----CCcEEEEecCCCHHHHHHHhcCCCEEE
Confidence            45689999999999999999999988 6  999999875211  11111    11222111    124567789999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .++|..      ..+      ...+.+++.+++.+...+|.+.|
T Consensus        94 ~~a~~~------~~~------~~~~~~~~~~~~~~~~~iV~iSS  125 (236)
T 3qvo_A           94 ANLTGE------DLD------IQANSVIAAMKACDVKRLIFVLS  125 (236)
T ss_dssp             EECCST------THH------HHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EcCCCC------chh------HHHHHHHHHHHHcCCCEEEEEec
Confidence            998742      111      22456777777776544444433

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.87  E-value=1.5e-05  Score=70.67  Aligned_cols=113  Identities=15%  Similarity=0.129  Sum_probs=68.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch----hhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g----~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++...    ...|+.+..   .+...  .....+.+...|++|.
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~d~~d~~---~v~~~--~~~~~~~~g~iD~li~   93 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSW--NTISIDFRENPNADHSFTIKDSGEE---EIKSV--IEKINSKSIKVDTFVC   93 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTSSEEEECSCSSHH---HHHHH--HHHHHTTTCCEEEEEE
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCcccccccceEEEeCCHH---HHHHH--HHHHHHHcCCCCEEEE
Confidence            345899999999999999999999998  899999976211    111211110   00000  0011122345699999


Q ss_pred             cCCCCCCC----CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          121 PAGVPRKP----GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       121 ~ag~~~~~----g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                      +||.....    ..+   ....+..|+.....+.+.+.+.- ..+.|+++|.
T Consensus        94 ~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (251)
T 3orf_A           94 AAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGA  145 (251)
T ss_dssp             CCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEec
Confidence            99964321    111   23456678877777777776654 3456666654

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.87  E-value=1.6e-05  Score=72.15  Aligned_cols=66  Identities=17%  Similarity=0.197  Sum_probs=49.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++||+|||+ |.+|..++..|+..|+  +|.++|+++.+.  .++....    +..   .++++++++++|+||++..
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~--~~~~~~g----~~~---~~~~~~~~~~advvi~~v~   66 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRAGF--DVTVWNRNPAKC--APLVALG----ARQ---ASSPAEVCAACDITIAMLA   66 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHHTC--CEEEECSSGGGG--HHHHHHT----CEE---CSCHHHHHHHCSEEEECCS
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Cee---cCCHHHHHHcCCEEEEEcC
Confidence            358999998 9999999999999998  899999976321  1122211    222   3467788999999999863

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.86  E-value=0.00017  Score=64.85  Aligned_cols=140  Identities=16%  Similarity=0.230  Sum_probs=70.3

Q ss_pred             hhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCC
Q 021932           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTN   96 (305)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~   96 (305)
                      |-|+++.+.+-.+.+|+++...  ++.+.+++.|+||+|.+|..++..|+..|.  +|+++|.++ ....+.++...  .
T Consensus         5 ~~~~~~~~~~~~~~~~~~m~~~--~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~--~   78 (273)
T 3uf0_A            5 HHHSSGVDLGTENLYFQSMTGP--FSLAGRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRTDGVKEVADEIADG--G   78 (273)
T ss_dssp             --------------------CT--TCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTHHHHHHHHHHTT--T
T ss_pred             ccccccccccccccchhhcccc--cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHHHHhc--C
Confidence            4466777777777788876532  445556899999999999999999999998  899999654 22223333332  2


Q ss_pred             ceEEEEec-CCCHH---H------HhCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCC
Q 021932           97 AVVRGFLG-QQQLE---D------ALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPK  156 (305)
Q Consensus        97 ~~v~~~~~-t~d~~---~------al~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~I~~~~p~  156 (305)
                      ..+..+.. -+|.+   +      .+...|++|.+||......   .+   ....+..|+...    +.+.+.+.+.. .
T Consensus        79 ~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~  157 (273)
T 3uf0_A           79 GSAEAVVADLADLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG-S  157 (273)
T ss_dssp             CEEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C
T ss_pred             CcEEEEEecCCCHHHHHHHHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-C
Confidence            23332211 12221   1      1237899999999754221   11   233455665544    44444555544 4


Q ss_pred             cEEEEecC
Q 021932          157 AIVNLISN  164 (305)
Q Consensus       157 aiviv~tN  164 (305)
                      +.|+++|.
T Consensus       158 g~IV~isS  165 (273)
T 3uf0_A          158 GRIVTIAS  165 (273)
T ss_dssp             EEEEEECC
T ss_pred             CEEEEEcc
Confidence            55666653

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.86  E-value=4.1e-05  Score=69.02  Aligned_cols=136  Identities=14%  Similarity=0.091  Sum_probs=67.8

Q ss_pred             hhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccC
Q 021932           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT   95 (305)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~   95 (305)
                      |-|.+|+.+--.+..|.++...     ..+.+.|+||+|.+|..++..|+..|.  +|++.|++..  .....++..   
T Consensus         5 ~~~~~~~~~~~~~~~~~~m~~~-----~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~---   74 (272)
T 4dyv_A            5 HHHSSGVDLGTENLYFQSMSKT-----GKKIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIGD---   74 (272)
T ss_dssp             ----------------------------CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTS---
T ss_pred             ccccccccCCcceeehhhhcCC-----CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC---
Confidence            6678888886666677666422     234788899999999999999999998  8999998752  222222211   


Q ss_pred             CceEEEEe-cCCC---HHHH-------hCCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHH----HHHHHHHHHHh
Q 021932           96 NAVVRGFL-GQQQ---LEDA-------LTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAKC  153 (305)
Q Consensus        96 ~~~v~~~~-~t~d---~~~a-------l~~aDiVIi~ag~~~~~g----~~---r~d~~~~N~~i----~~~i~~~I~~~  153 (305)
                        ++..+. .-+|   .++.       +...|++|.+||.....+    .+   ..+.+..|+..    .+.+.+.+.+.
T Consensus        75 --~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~  152 (272)
T 4dyv_A           75 --DALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQ  152 (272)
T ss_dssp             --CCEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHS
T ss_pred             --CeEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhC
Confidence              111111 0112   2222       238999999999743211    11   23345566554    55666666655


Q ss_pred             CC-CcEEEEecCC
Q 021932          154 CP-KAIVNLISNP  165 (305)
Q Consensus       154 ~p-~aiviv~tNP  165 (305)
                      .+ .+.|++++.-
T Consensus       153 ~~~~g~IV~isS~  165 (272)
T 4dyv_A          153 EPRGGRIINNGSI  165 (272)
T ss_dssp             SSCCEEEEEECCS
T ss_pred             CCCCcEEEEECch
Confidence            42 5677777643

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=97.85  E-value=2.9e-05  Score=71.68  Aligned_cols=96  Identities=14%  Similarity=0.176  Sum_probs=70.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC----CCHHHHhCC---
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTG---  114 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~-----~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t----~d~~~al~~---  114 (305)
                      |||.|+||+|++|++++..|+..|     +  +|+++|++.....   +.+    ..+..+.+.    .++.+++++   
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~--~V~~~~r~~~~~~---~~~----~~~~~~~~Dl~d~~~~~~~~~~~~~   72 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPW--KVYGVARRTRPAW---HED----NPINYVQCDISDPDDSQAKLSPLTD   72 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSE--EEEEEESSCCCSC---CCS----SCCEEEECCTTSHHHHHHHHTTCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCce--EEEEEeCCCCccc---ccc----CceEEEEeecCCHHHHHHHHhcCCC
Confidence            589999999999999999998887     6  9999998752211   111    122221111    134567788   


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 021932          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC  154 (305)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~  154 (305)
                      +|+||.+|+...   .+..+.+..|+.....+++.+.+.+
T Consensus        73 ~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~  109 (364)
T 2v6g_A           73 VTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPNC  109 (364)
T ss_dssp             CCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhc
Confidence            999999998652   3456678899999999999999874

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.85  E-value=2e-05  Score=70.42  Aligned_cols=94  Identities=13%  Similarity=0.208  Sum_probs=63.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~e-l~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      .|||+|||+ |.+|..++..|...|+  + +.++|+++..  +..+....   .+..   .++++++++++|+||++...
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~g~--~~v~~~~~~~~~--~~~~~~~~---g~~~---~~~~~~~~~~~Dvvi~av~~   78 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRKGF--RIVQVYSRTEES--ARELAQKV---EAEY---TTDLAEVNPYAKLYIVSLKD   78 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSHHH--HHHHHHHT---TCEE---ESCGGGSCSCCSEEEECCCH
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHH--HHHHHHHc---CCce---eCCHHHHhcCCCEEEEecCH
Confidence            469999998 9999999999988887  5 8999986521  11122210   1222   23566778999999998521


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPv  166 (305)
                                      ....++++.+.+.. ++.+++..++-.
T Consensus        79 ----------------~~~~~v~~~l~~~~~~~~ivv~~s~~~  105 (266)
T 3d1l_A           79 ----------------SAFAELLQGIVEGKREEALMVHTAGSI  105 (266)
T ss_dssp             ----------------HHHHHHHHHHHTTCCTTCEEEECCTTS
T ss_pred             ----------------HHHHHHHHHHHhhcCCCcEEEECCCCC
Confidence                            11356667777665 677887776643

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.85  E-value=1.1e-05  Score=71.64  Aligned_cols=97  Identities=14%  Similarity=0.202  Sum_probs=62.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~--~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++||+|||+ |.+|..++..|...++  ..+|.++|+++.+  ..++....   .+..   ..+.+++++++|+||++. 
T Consensus         2 ~~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~--~~~~~~~~---g~~~---~~~~~e~~~~aDvVilav-   71 (247)
T 3gt0_A            2 DKQIGFIGC-GNMGMAMIGGMINKNIVSSNQIICSDLNTAN--LKNASEKY---GLTT---TTDNNEVAKNADILILSI-   71 (247)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEEECSCHHH--HHHHHHHH---CCEE---CSCHHHHHHHCSEEEECS-
T ss_pred             CCeEEEECc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHH--HHHHHHHh---CCEE---eCChHHHHHhCCEEEEEe-
Confidence            469999998 9999999999999886  3589999987521  12222110   1222   246678899999999987 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd  167 (305)
                       +  +.            .+.++++.+.++. |+.+++..++.+.
T Consensus        72 -~--~~------------~~~~v~~~l~~~l~~~~~vvs~~~gi~  101 (247)
T 3gt0_A           72 -K--PD------------LYASIINEIKEIIKNDAIIVTIAAGKS  101 (247)
T ss_dssp             -C--TT------------THHHHC---CCSSCTTCEEEECSCCSC
T ss_pred             -C--HH------------HHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence             1  11            1445556676655 5666665555555

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.83  E-value=0.0001  Score=66.04  Aligned_cols=129  Identities=18%  Similarity=0.210  Sum_probs=71.8

Q ss_pred             ccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC--
Q 021932           33 LGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ--  107 (305)
Q Consensus        33 ~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d--  107 (305)
                      ++...+.+.++.+.++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...  ..++..+.. -+|  
T Consensus        18 ~~~~~~~~~~~l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~   93 (272)
T 1yb1_A           18 FQGHMPKRRKSVTGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNRE   93 (272)
T ss_dssp             -------CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             eccccCCcccccCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhc--CCeEEEEEeeCCCHH
Confidence            333334344555667999999999999999999999998  8999998752  2222233321  122332211 122  


Q ss_pred             -HHHHh-------CCCCEEEEcCCCCCCCCC------chhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCCC
Q 021932          108 -LEDAL-------TGMDIVIIPAGVPRKPGM------TRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNPV  166 (305)
Q Consensus       108 -~~~al-------~~aDiVIi~ag~~~~~g~------~r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tNPv  166 (305)
                       .++++       .+.|+||.+||.......      ...+.+..|+..    .+.+.+.+.+.. .+.|+++|...
T Consensus        94 ~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~  169 (272)
T 1yb1_A           94 DIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAA  169 (272)
T ss_dssp             HHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC
T ss_pred             HHHHHHHHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEechh
Confidence             22222       378999999997532211      122345666665    444444444433 45666665543

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=97.83  E-value=2.5e-05  Score=72.91  Aligned_cols=115  Identities=13%  Similarity=-0.051  Sum_probs=70.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch---hhhhhhccc--CCc-eEEEEecC-C---CHHHHhCC--
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMD--TNA-VVRGFLGQ-Q---QLEDALTG--  114 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g---~~~DL~~~~--~~~-~v~~~~~t-~---d~~~al~~--  114 (305)
                      ++|.|+||+|++|++++..|+..|+  +|+++|++....   ...++....  ... .+..+.+. +   ++.+++++  
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  106 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK  106 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence            5899999999999999999999997  999999865211   111111000  011 33332211 2   23455665  


Q ss_pred             CCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCC----CcEEEEec
Q 021932          115 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCP----KAIVNLIS  163 (305)
Q Consensus       115 aDiVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p----~aiviv~t  163 (305)
                      .|+||.+||.....  ..+..+.+..|+.....+++.+.+...    .+.|+.+|
T Consensus       107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~S  161 (381)
T 1n7h_A          107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAG  161 (381)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeC
Confidence            59999999864211  012345667788888888888887652    23555543

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.83  E-value=4.8e-05  Score=66.81  Aligned_cols=116  Identities=17%  Similarity=0.185  Sum_probs=68.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHhC----
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT----  113 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~----  113 (305)
                      .+.++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...  ..++..+.. -+|   ++++++    
T Consensus         9 ~~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   84 (255)
T 1fmc_A            9 LDGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFAIS   84 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            3446899999999999999999999998  8999998752  2222233321  122322211 122   223333    


Q ss_pred             ---CCCEEEEcCCCCCCC--CCc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecC
Q 021932          114 ---GMDIVIIPAGVPRKP--GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN  164 (305)
Q Consensus       114 ---~aDiVIi~ag~~~~~--g~~---r~d~~~~N~~i~~~i~~~I----~~~~p~aiviv~tN  164 (305)
                         +.|+||.+||.....  ..+   ..+.+..|+.....+.+.+    .+.. .+.|+++|.
T Consensus        85 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS  146 (255)
T 1fmc_A           85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITS  146 (255)
T ss_dssp             HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             hcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence               899999999864321  112   2345566766655544444    4443 355665553

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.83  E-value=4.6e-05  Score=69.98  Aligned_cols=67  Identities=16%  Similarity=0.208  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +.+||+|||. |.+|..++..|+..|+  +|.++|+++..  ..++....    +..   .++++++++++|+||++..
T Consensus         8 ~~~~IgiIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~vp   74 (306)
T 3l6d_A            8 FEFDVSVIGL-GAMGTIMAQVLLKQGK--RVAIWNRSPGK--AAALVAAG----AHL---CESVKAALSASPATIFVLL   74 (306)
T ss_dssp             CSCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHT----CEE---CSSHHHHHHHSSEEEECCS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhcCCEEEEEeC
Confidence            3569999998 9999999999999998  89999987521  11222211    121   2467788999999999863

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.82  E-value=0.00015  Score=64.29  Aligned_cols=109  Identities=15%  Similarity=0.149  Sum_probs=61.9

Q ss_pred             CCCCCCCCCEEEEEcCCCchHHHHHHHHHhCC---CCcEEEEEeCCCCch-hhhhhhcccCCceEEEEec----CCCHHH
Q 021932           39 RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINP---LVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLG----QQQLED  110 (305)
Q Consensus        39 ~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~---~~~el~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~----t~d~~~  110 (305)
                      .++.+.+.++|.|+||+|.+|..++..|++.|   .  +|+++|++.... ...++...  ..++..+..    ..+.++
T Consensus        14 ~~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~--~V~~~~r~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~   89 (267)
T 1sny_A           14 LVPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKN--HSNIHILEIDLRNFDAYDK   89 (267)
T ss_dssp             ------CCSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHH--CTTEEEEECCTTCGGGHHH
T ss_pred             ccccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCc--EEEEEecChhhhHHHHHhhcc--CCceEEEEecCCChHHHHH
Confidence            33355556799999999999999999999988   6  999999876221 22233221  112222211    123334


Q ss_pred             HhC---------CCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHHHHHHHH
Q 021932          111 ALT---------GMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIA  151 (305)
Q Consensus       111 al~---------~aDiVIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i~~~I~  151 (305)
                      .++         ..|++|.+||.....+    .+   ....+..|+.....+.+.+.
T Consensus        90 ~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~  146 (267)
T 1sny_A           90 LVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACL  146 (267)
T ss_dssp             HHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHH
Confidence            443         7999999999754111    11   23345556554444444443

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.81  E-value=4.9e-05  Score=69.85  Aligned_cols=96  Identities=22%  Similarity=0.225  Sum_probs=63.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC--CCCchhhhhhhcccC----C---ceEEEEecCC--CHHHHhCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNTPGVTADISHMDT----N---AVVRGFLGQQ--QLEDALTGM  115 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~--~~~~g~~~DL~~~~~----~---~~v~~~~~t~--d~~~al~~a  115 (305)
                      |||+|||+ |.+|+.++..|...|+  +|.++|+  ++...  ..+.....    .   ..+..   ++  +++++++++
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~--~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~   72 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEIL--KSISAGREHPRLGVKLNGVEI---FWPEQLEKCLENA   72 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHH--HHHHTTCCBTTTTBCCCSEEE---ECGGGHHHHHTTC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEEccCCHHHH--HHHHHhCcCcccCccccceEE---ecHHhHHHHHhcC
Confidence            58999999 9999999999998888  9999998  54111  11111100    0   12232   23  566788999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 021932          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv  166 (305)
                      |+||++....                .+.++++.+....|+.+|+.++|-+
T Consensus        73 D~vi~~v~~~----------------~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           73 EVVLLGVSTD----------------GVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             SEEEECSCGG----------------GHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             CEEEEcCChH----------------HHHHHHHHHhcCCCCCEEEEEcCcC
Confidence            9999986321                1334445555533677888888776

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.81  E-value=0.00018  Score=64.28  Aligned_cols=136  Identities=16%  Similarity=0.183  Sum_probs=65.0

Q ss_pred             hhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC--Cchhhhhhhccc
Q 021932           18 HLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN--TPGVTADISHMD   94 (305)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D-~~~--~~g~~~DL~~~~   94 (305)
                      |-|||+.+-..+...+..+...       ++|.|+||+|.+|..++..|+..|.  +|++.+ .++  ......++... 
T Consensus         5 ~~~~~~~~~~~~n~~~~~m~~~-------k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-   74 (272)
T 4e3z_A            5 HHHSSGVDLGTENLYFQSMSDT-------PVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITES-   74 (272)
T ss_dssp             -------------------CCS-------CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT-
T ss_pred             cCCCCCCCCCChhhhhhhccCC-------CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhc-
Confidence            6788888886666566655432       3799999999999999999999998  887764 433  12222223222 


Q ss_pred             CCceEEEEec-CCC---HHHHh-------CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHHH----HHHHHH
Q 021932           95 TNAVVRGFLG-QQQ---LEDAL-------TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTL----CEGIAK  152 (305)
Q Consensus        95 ~~~~v~~~~~-t~d---~~~al-------~~aDiVIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i----~~~I~~  152 (305)
                       ..++..+.. -+|   .++.+       ...|++|.+||.....+    .+   ..+.+..|+.....+    .+.+.+
T Consensus        75 -~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~  153 (272)
T 4e3z_A           75 -GGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSR  153 (272)
T ss_dssp             -TCEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCG
T ss_pred             -CCcEEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence             223333211 112   22222       37899999999754322    12   233456665544444    444443


Q ss_pred             h--CCCcEEEEecC
Q 021932          153 C--CPKAIVNLISN  164 (305)
Q Consensus       153 ~--~p~aiviv~tN  164 (305)
                      .  ...+.|+++|.
T Consensus       154 ~~~~~~g~iv~isS  167 (272)
T 4e3z_A          154 LYSGQGGAIVNVSS  167 (272)
T ss_dssp             GGTCCCEEEEEECC
T ss_pred             hccCCCCEEEEEcc
Confidence            2  23456666654

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.80  E-value=7.6e-05  Score=67.61  Aligned_cols=65  Identities=18%  Similarity=0.212  Sum_probs=48.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      |||+|||+ |.+|..++..|...|+  +|.++|+++...  ..+....    +..   ..+++++++++|+||++..
T Consensus         6 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEAI--ADVIAAG----AET---ASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTT----CEE---CSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHHH--HHHHHCC----Cee---cCCHHHHHhCCCEEEEECC
Confidence            69999998 9999999999999887  899999865211  1122211    222   2467788899999999964

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.80  E-value=3.8e-05  Score=70.91  Aligned_cols=98  Identities=19%  Similarity=0.147  Sum_probs=64.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C-chhhhhhhcccCCceEEEEec----CCCHHHHhC--CCCE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-PGVTADISHMDTNAVVRGFLG----QQQLEDALT--GMDI  117 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~-~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~--~aDi  117 (305)
                      ++||.|+||+|++|+.++..|+..|+  +|++++++. . ......+.... ...+..+.+    ..++.++++  ++|+
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~-~~~v~~~~~Dl~d~~~l~~~~~~~~~d~   86 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAKIFKALE-DKGAIIVYGLINEQEAMEKILKEHEIDI   86 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHH-HTTCEEEECCTTCHHHHHHHHHHTTCCE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHH-hCCcEEEEeecCCHHHHHHHHhhCCCCE
Confidence            45899999999999999999999987  899999865 1 11111111110 011222111    124567788  9999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEE
Q 021932          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIV  159 (305)
Q Consensus       118 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiv  159 (305)
                      ||.+++..             |+...+.+++.+.+.+ .+-++
T Consensus        87 Vi~~a~~~-------------n~~~~~~l~~aa~~~g~v~~~v  116 (346)
T 3i6i_A           87 VVSTVGGE-------------SILDQIALVKAMKAVGTIKRFL  116 (346)
T ss_dssp             EEECCCGG-------------GGGGHHHHHHHHHHHCCCSEEE
T ss_pred             EEECCchh-------------hHHHHHHHHHHHHHcCCceEEe
Confidence            99998752             5666778888888887 44443

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=97.80  E-value=2.4e-05  Score=69.30  Aligned_cols=101  Identities=18%  Similarity=0.209  Sum_probs=67.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCC--CCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTG--MDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~--aDiVIi~ag  123 (305)
                      |||.|+||+|++|++++..|+. ++  +|+++++++...     .    .  +.. .....++++++++  .|+||.+||
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~--~V~~~~r~~~~~-----~----~--~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   66 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RH--EVIKVYNSSEIQ-----G----G--YKLDLTDFPRLEDFIIKKRPDVIINAAA   66 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TS--CEEEEESSSCCT-----T----C--EECCTTSHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CC--eEEEecCCCcCC-----C----C--ceeccCCHHHHHHHHHhcCCCEEEECCc
Confidence            4899999999999999999984 65  899999865210     0    0  111 0001134455665  999999998


Q ss_pred             CCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          124 VPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       124 ~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .....  ..+..+.+..|+.....+++.+.+.+.  .++.+|
T Consensus        67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~iv~~S  106 (273)
T 2ggs_A           67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS--YIVHIS  106 (273)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEE
T ss_pred             ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEe
Confidence            64311  123455678899999999999987653  444443

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.80  E-value=5.2e-05  Score=68.02  Aligned_cols=114  Identities=16%  Similarity=0.068  Sum_probs=68.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCC---HHHHh-------C
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------T  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------~  113 (305)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|++.....  ++.... ...+..+.. -+|   .++++       .
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   78 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALD--DLVAAY-PDRAEAISLDVTDGERIDVVAADVLARYG   78 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGH--HHHHHC-TTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHhc-cCCceEEEeeCCCHHHHHHHHHHHHHhCC
Confidence            345899999999999999999999998  9999998752111  111110 112222111 122   22223       2


Q ss_pred             CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +.|++|.+||.....   ..+   ....+..|+..    .+.+.+.+.+... +.|+++|.
T Consensus        79 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~~iv~~sS  138 (281)
T 3m1a_A           79 RVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGS-GSVVNISS  138 (281)
T ss_dssp             CCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECC
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEEEcC
Confidence            789999999864211   112   23356667766    7777777776654 44555543

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=97.80  E-value=0.00012  Score=68.30  Aligned_cols=103  Identities=15%  Similarity=0.104  Sum_probs=66.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-----CCHHHHhCCCCEEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-----QQLEDALTGMDIVII  120 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-----~d~~~al~~aDiVIi  120 (305)
                      .+||.|+||+|++|++++..|+..|+  +|++++++.......++...   ..+..+.+.     .++.++++++|+||+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~l~~~---~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~   79 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAFI   79 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCChhhHHHHhhc---CCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence            46899999999999999999998887  89999987633222223321   122222111     135677899999998


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                      +++...   .      ..|... +.+++.+.+.+ ..-+|.+.|
T Consensus        80 ~a~~~~---~------~~~~~~-~~l~~aa~~~g~v~~~V~~SS  113 (352)
T 1xgk_A           80 NTTSQA---G------DEIAIG-KDLADAAKRAGTIQHYIYSSM  113 (352)
T ss_dssp             CCCSTT---S------CHHHHH-HHHHHHHHHHSCCSEEEEEEC
T ss_pred             cCCCCC---c------HHHHHH-HHHHHHHHHcCCccEEEEeCC
Confidence            875331   1      125544 88888888876 544444333

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.79  E-value=4.2e-05  Score=69.12  Aligned_cols=66  Identities=17%  Similarity=0.271  Sum_probs=47.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++|||+|||+ |.+|..++..|...|+  +|.++| ++....  .+....    +.   ...+++++++++|+||++..
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~-~~~~~~--~~~~~g----~~---~~~~~~~~~~~~D~vi~~vp   67 (295)
T 1yb4_A            2 NAMKLGFIGL-GIMGSPMAINLARAGH--QLHVTT-IGPVAD--ELLSLG----AV---NVETARQVTEFADIIFIMVP   67 (295)
T ss_dssp             --CEEEECCC-STTHHHHHHHHHHTTC--EEEECC-SSCCCH--HHHTTT----CB---CCSSHHHHHHTCSEEEECCS
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEEc-CHHHHH--HHHHcC----Cc---ccCCHHHHHhcCCEEEEECC
Confidence            3479999998 9999999999998888  999999 762211  111111    11   12456788899999999863

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.79  E-value=0.00028  Score=63.64  Aligned_cols=141  Identities=15%  Similarity=0.187  Sum_probs=69.0

Q ss_pred             hhhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---Cchhhhhhhcc
Q 021932           17 AHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHM   93 (305)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~   93 (305)
                      .|-||..++...+..++..+....    +.+++.|+||+|.+|..++..|+..|.  +|+++|...   ......++...
T Consensus         4 ~~~~~~~~~~~~~n~~~~~mm~~~----~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~   77 (280)
T 4da9_A            4 HHHHSSGVDLGTENLYFQSMMTQK----ARPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGL   77 (280)
T ss_dssp             -------------------CCSCC----CCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHT
T ss_pred             cccCcccccccccchhhhhhhhcc----CCCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhc
Confidence            466788888877887777664332    235789999999999999999999998  999999744   12222333322


Q ss_pred             cCCceEEEEec----CCCHHHHhC-------CCCEEEEcCCCC--C-CC--CCc---hhhHHHhhHH----HHHHHHHHH
Q 021932           94 DTNAVVRGFLG----QQQLEDALT-------GMDIVIIPAGVP--R-KP--GMT---RDDLFNINAG----IVKTLCEGI  150 (305)
Q Consensus        94 ~~~~~v~~~~~----t~d~~~al~-------~aDiVIi~ag~~--~-~~--g~~---r~d~~~~N~~----i~~~i~~~I  150 (305)
                        ..++..+..    ..+.+++++       ..|++|.+||..  . .+  ..+   ....+..|+.    +.+.+.+.+
T Consensus        78 --~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~  155 (280)
T 4da9_A           78 --GARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAM  155 (280)
T ss_dssp             --TCCEEEEECCTTSGGGHHHHHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             --CCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence              122332211    112233333       789999999973  1 11  111   1233445554    445566666


Q ss_pred             HHhCC--CcEEEEecCC
Q 021932          151 AKCCP--KAIVNLISNP  165 (305)
Q Consensus       151 ~~~~p--~aiviv~tNP  165 (305)
                      .+...  .+.|+++|.-
T Consensus       156 ~~~~~~~~g~Iv~isS~  172 (280)
T 4da9_A          156 LASDARASRSIINITSV  172 (280)
T ss_dssp             HHHCCCCCEEEEEECCC
T ss_pred             HHhCCCCCCEEEEEcch
Confidence            65542  4566666643

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=97.79  E-value=2.2e-05  Score=71.11  Aligned_cols=106  Identities=15%  Similarity=0.194  Sum_probs=69.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhC--CCCEEEEcC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALT--GMDIVIIPA  122 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~--~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~--~aDiVIi~a  122 (305)
                      ||.|+||+|++|++++..|+..  +.  +|+++|+......     ..   ..+.. .....++.++++  ++|+||.+|
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~-----~~---~~~~~D~~d~~~~~~~~~~~~~d~vih~a   70 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK--NVIASDIVQRDTG-----GI---KFITLDVSNRDEIDRAVEKYSIDAIFHLA   70 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG--GEEEEESSCCCCT-----TC---CEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC--EEEEecCCCcccc-----Cc---eEEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence            5899999999999999988877  66  8899987652111     00   01111 000113445666  899999999


Q ss_pred             CCCCCCC-CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          123 GVPRKPG-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       123 g~~~~~g-~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +...... ....+.+..|+.....+++.+.+.+.+.+|.+.|
T Consensus        71 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS  112 (317)
T 3ajr_A           71 GILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPST  112 (317)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             cccCCccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecC
Confidence            8532111 2345567889999999999998876555554443

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.78  E-value=0.00011  Score=65.30  Aligned_cols=118  Identities=17%  Similarity=0.187  Sum_probs=69.7

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHhC--
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT--  113 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~--  113 (305)
                      +..+.++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++...   ..+..+.. -+|   ++++++  
T Consensus        12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~   86 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTT   86 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCCC---CceEEEECCCCCHHHHHHHHHHH
Confidence            444556899999999999999999999998  9999998652  1112222211   12222211 122   223333  


Q ss_pred             -----CCCEEEEcCCCCCCC-----CC---chhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          114 -----GMDIVIIPAGVPRKP-----GM---TRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       114 -----~aDiVIi~ag~~~~~-----g~---~r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                           +.|++|.+||.....     ..   ...+.+..|+.....+.+.+.+.   ...+.|+++|.
T Consensus        87 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  153 (278)
T 2bgk_A           87 IAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTAS  153 (278)
T ss_dssp             HHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             HHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEee
Confidence                 799999999864311     11   12345666766665555555443   23455666653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.76  E-value=0.00018  Score=56.95  Aligned_cols=71  Identities=21%  Similarity=0.243  Sum_probs=44.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCH---H-HHhCCCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL---E-DALTGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~---~-~al~~aDiVIi~  121 (305)
                      .|||+|+|+ |.+|..++..|...|+  +++++|.++..  ...+.... ..... ....++.   . ..++++|+||++
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~--~v~~~d~~~~~--~~~~~~~~-~~~~~-~~d~~~~~~l~~~~~~~~d~vi~~   76 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEI-DALVI-NGDCTKIKTLEDAGIEDADMYIAV   76 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHC-SSEEE-ESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHhc-CcEEE-EcCCCCHHHHHHcCcccCCEEEEe
Confidence            479999998 9999999999999887  99999986521  11122110 11111 1111122   1 226899999999


Q ss_pred             CC
Q 021932          122 AG  123 (305)
Q Consensus       122 ag  123 (305)
                      .+
T Consensus        77 ~~   78 (140)
T 1lss_A           77 TG   78 (140)
T ss_dssp             CS
T ss_pred             eC
Confidence            64

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.76  E-value=0.00022  Score=63.89  Aligned_cols=91  Identities=19%  Similarity=0.175  Sum_probs=60.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      |||+|||+ |.+|..++..|...|+  +|+++|+++....  .+.......  ..   .++++++ +++|+||++...  
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g~~~--~~---~~~~~~~-~~~D~vi~av~~--   67 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCE--KAVERQLVD--EA---GQDLSLL-QTAKIIFLCTPI--   67 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHTTSCS--EE---ESCGGGG-TTCSEEEECSCH--
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHhCCCCc--cc---cCCHHHh-CCCCEEEEECCH--
Confidence            58999998 9999999999999888  8999998752111  122111111  11   2356666 999999998631  


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                                    ..+.++++.+.... |+.+|+.++|
T Consensus        68 --------------~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           68 --------------QLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             --------------HHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence                          23556666776654 6777766644

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.76  E-value=0.0002  Score=63.09  Aligned_cols=118  Identities=15%  Similarity=0.140  Sum_probs=71.4

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHh----
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL----  112 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al----  112 (305)
                      ..+.+++.|+||+|.+|..++..|++.|.  +|+++|+++  ......++...  ..++..+.. -+|   .++.+    
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~   81 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVAD--GGTAISVAVDVSDPESAKAMADRTL   81 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            33455899999999999999999999998  899999876  22222333322  122332211 122   22222    


Q ss_pred             ---CCCCEEEEcCCCCC--C----CCCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 021932          113 ---TGMDIVIIPAGVPR--K----PGMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNP  165 (305)
Q Consensus       113 ---~~aDiVIi~ag~~~--~----~g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tNP  165 (305)
                         ...|++|.+||...  .    ...+   ..+.+..|+..    .+.+.+.+.+.. .+.|+++|..
T Consensus        82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  149 (253)
T 3qiv_A           82 AEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSST  149 (253)
T ss_dssp             HHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC-
T ss_pred             HHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCc
Confidence               38999999998731  1    0112   23456667665    666666666654 4566666643

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.76  E-value=0.00016  Score=70.69  Aligned_cols=112  Identities=7%  Similarity=0.072  Sum_probs=70.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCC---CCEEEE
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVII  120 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~---aDiVIi  120 (305)
                      ..++||+|||+ |.+|..+|..|+..|+  +|.++|+++.+  +.++........+..   ++++++++++   +|+||+
T Consensus        13 ~~~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~~r~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVil   84 (480)
T 2zyd_A           13 MSKQQIGVVGM-AVMGRNLALNIESRGY--TVSIFNRSREK--TEEVIAENPGKKLVP---YYTVKEFVESLETPRRILL   84 (480)
T ss_dssp             --CBSEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHH--HHHHHHHSTTSCEEE---CSSHHHHHHTBCSSCEEEE
T ss_pred             cCCCeEEEEcc-HHHHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHhhCCCCCeEE---eCCHHHHHhCCCCCCEEEE
Confidence            34568999999 9999999999999998  89999986521  122222100112332   3467777776   999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHH
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFK  178 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~  178 (305)
                      +...+    .           .++++++.+.... |+.+||..+|-....+..+.+.+.
T Consensus        85 ~Vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~  128 (480)
T 2zyd_A           85 MVKAG----A-----------GTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELS  128 (480)
T ss_dssp             CSCSS----S-----------HHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHH
T ss_pred             ECCCH----H-----------HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHH
Confidence            86321    1           2444556666665 677888888876443332334443

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.75  E-value=0.00034  Score=62.92  Aligned_cols=116  Identities=16%  Similarity=0.161  Sum_probs=68.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-----
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-----  112 (305)
                      .+.++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...   .++..+.. -+|   .++++     
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~  101 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAY---GDCQAIPADLSSEAGARRLAQALGE  101 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTS---SCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc---CceEEEEeeCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999998  8999998752  2222233221   12222111 112   22222     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCC---CcEEEEecC
Q 021932          113 --TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCP---KAIVNLISN  164 (305)
Q Consensus       113 --~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~I~~~~p---~aiviv~tN  164 (305)
                        ...|++|.+||.....   ..+   ....+..|+...    +.+.+.+.+...   .+.|+++|.
T Consensus       102 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS  168 (276)
T 2b4q_A          102 LSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGS  168 (276)
T ss_dssp             HCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECC
T ss_pred             hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence              3789999999964321   111   234555665544    555666655543   156666654

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.75  E-value=0.00029  Score=61.67  Aligned_cols=114  Identities=12%  Similarity=0.099  Sum_probs=67.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------  112 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++...   ..+..+.. -+|   .++.+       
T Consensus         6 ~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (251)
T 1zk4_A            6 GKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999998  8999998652  1111222211   12222211 122   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ...|++|.+||......   .+   ....+..|+.    ..+.+.+.+.+....+.|+++|.
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS  142 (251)
T 1zk4_A           81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSS  142 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            35899999998653211   11   2345666766    44555555554433256666654

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.74  E-value=0.00012  Score=64.48  Aligned_cols=117  Identities=16%  Similarity=0.182  Sum_probs=68.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-----
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-----  112 (305)
                      .+.++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++...  ..++..+.. -+|   .++++     
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   86 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRME--GHDVSSVVMDVTNTESVQNAVRSVHE   86 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            3445899999999999999999999998  9999998752  2222233321  122332211 122   22333     


Q ss_pred             --CCCCEEEEcCCCCC-C-C--CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          113 --TGMDIVIIPAGVPR-K-P--GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       113 --~~aDiVIi~ag~~~-~-~--g~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                        .+.|+||.+||... . +  ..+   ..+.+..|+.....+.+.+.+.   ...+.+++++.
T Consensus        87 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  150 (260)
T 3awd_A           87 QEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGS  150 (260)
T ss_dssp             HHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence              37899999998653 1 1  112   2344566766555555544432   13455666653

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.74  E-value=0.00011  Score=66.48  Aligned_cols=102  Identities=17%  Similarity=0.055  Sum_probs=65.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEec----CCCHHHHhCCCCEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIV  118 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDiV  118 (305)
                      ++||.|+||+|++|++++..|+..|+  +|++++++..   ......+.... ...+..+.+    ..++.++++++|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~l~~~~~~~d~v   80 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALKQVDVV   80 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHTTCSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHHHHHHH-hCCeEEEeCCCCCHHHHHHHHhCCCEE
Confidence            46899999999999999999999987  8999998742   11111121110 011222111    12466788999999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEE
Q 021932          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIV  159 (305)
Q Consensus       119 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiv  159 (305)
                      |.+++.....         .|....+.+++.+.+.+ .+-+|
T Consensus        81 i~~a~~~~~~---------~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           81 ISALAGGVLS---------HHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             EECCCCSSSS---------TTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             EECCccccch---------hhHHHHHHHHHHHHhcCCCceEE
Confidence            9998854211         14455677778887776 44443

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.73  E-value=6.2e-05  Score=67.04  Aligned_cols=101  Identities=13%  Similarity=0.114  Sum_probs=63.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~--~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ||.|+||+|++|++++..|+..  |+  +|+++++++....  ++.... ...+.. +....++.++++++|+||.+++.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~~~~~~-~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS--QIVAIVRNPAKAQ--ALAAQG-ITVRQADYGDEAALTSALQGVEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTCH--HHHHTT-CEEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc--eEEEEEcChHhhh--hhhcCC-CeEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            5899999999999999999887  76  8999998752211  121111 001111 00112456788999999999875


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ..          ..|+...+.+++.+.+.+..-+|.+.|
T Consensus        76 ~~----------~~~~~~~~~l~~a~~~~~~~~~v~~Ss  104 (286)
T 2zcu_A           76 EV----------GQRAPQHRNVINAAKAAGVKFIAYTSL  104 (286)
T ss_dssp             ----------------CHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             Cc----------hHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence            31          136777888888888877555555544

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.73  E-value=0.00015  Score=71.01  Aligned_cols=99  Identities=17%  Similarity=0.187  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc-CCceEEEEecCCCHHHHhC---CCCEEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TNAVVRGFLGQQQLEDALT---GMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~-~~~~v~~~~~t~d~~~al~---~aDiVIi  120 (305)
                      .++||+|||. |.+|.++|..|+..|+  +|.++|+++.+.  .++.... ....+..   +.+++++++   ++|+||+
T Consensus         3 ~~~kIgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~--~~l~~~g~~g~~i~~---~~s~~e~v~~l~~aDvVil   74 (484)
T 4gwg_A            3 AQADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKV--DDFLANEAKGTKVVG---AQSLKEMVSKLKKPRRIIL   74 (484)
T ss_dssp             CCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHH--HHHHHTTTTTSSCEE---CSSHHHHHHTBCSSCEEEE
T ss_pred             CCCEEEEECh-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHhcccCCCceec---cCCHHHHHhhccCCCEEEE
Confidence            4579999998 9999999999999998  999999976221  2222211 1122332   235666655   6999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPv  166 (305)
                      +...+               +.++++++.+...- |+.+|+..+|-.
T Consensus        75 ~Vp~~---------------~~v~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           75 LVKAG---------------QAVDDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             CSCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             ecCCh---------------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            86321               22445556666665 677777776644

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.73  E-value=0.00046  Score=60.78  Aligned_cols=116  Identities=20%  Similarity=0.211  Sum_probs=69.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCCCchhhhhhhcccCCceEEEEec-CCC----HHHHh------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ----LEDAL------  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~e-l~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d----~~~al------  112 (305)
                      +.++|.|+||+|.+|..++..|+..|.  + |+++|+++......++........+..+.. -+|    .++++      
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~--~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh
Confidence            345899999999999999999999987  5 899998753222223332211123332211 112    12222      


Q ss_pred             -CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh----C--CCcEEEEecC
Q 021932          113 -TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC----C--PKAIVNLISN  164 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~----~--p~aiviv~tN  164 (305)
                       .+.|++|.+||...  .....+.+..|+.....+.+.+.+.    .  +.+.|+++|.
T Consensus        82 ~g~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS  138 (254)
T 1sby_A           82 LKTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS  138 (254)
T ss_dssp             HSCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             cCCCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECc
Confidence             37899999999642  2334556677776655555554432    2  2466666654

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.73  E-value=3.7e-05  Score=69.96  Aligned_cols=100  Identities=15%  Similarity=0.113  Sum_probs=61.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C---chhhhhhhcc-cCCceEEEEe--cCCCHHHHhCCCCE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---PGVTADISHM-DTNAVVRGFL--GQQQLEDALTGMDI  117 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~---~g~~~DL~~~-~~~~~v~~~~--~t~d~~~al~~aDi  117 (305)
                      +++||.|+||+|++|++++..|+..|+  +|++++++. .   ......+... .....+....  ...++.++++++|+
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~   80 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDI   80 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCE
Confidence            456899999999999999999999987  899999874 1   1111111110 0011111111  11246678899999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEE
Q 021932          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIV  159 (305)
Q Consensus       118 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiv  159 (305)
                      ||.+++...             ....+.+++.+.+.+ .+-+|
T Consensus        81 vi~~a~~~~-------------~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           81 VISALPFPM-------------ISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             EEECCCGGG-------------SGGGHHHHHHHHHHCCCCEEE
T ss_pred             EEECCCccc-------------hhhHHHHHHHHHHhCCccEEe
Confidence            999987531             223455666666665 44443

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.73  E-value=0.00013  Score=68.88  Aligned_cols=93  Identities=13%  Similarity=0.257  Sum_probs=63.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCC---CEEEEc
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGM---DIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~a---DiVIi~  121 (305)
                      +.|||+|||. |.+|..++..|+..|+  +|.++|+++.  .+.++....    +.   ..++++++++++   |+||++
T Consensus        21 ~~mkIgiIGl-G~mG~~~A~~L~~~G~--~V~v~dr~~~--~~~~l~~~g----~~---~~~s~~e~~~~a~~~DvVi~~   88 (358)
T 4e21_A           21 QSMQIGMIGL-GRMGADMVRRLRKGGH--ECVVYDLNVN--AVQALEREG----IA---GARSIEEFCAKLVKPRVVWLM   88 (358)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTT----CB---CCSSHHHHHHHSCSSCEEEEC
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHH--HHHHHHHCC----CE---EeCCHHHHHhcCCCCCEEEEe
Confidence            3479999998 9999999999999998  9999998752  112222221    11   134677888888   999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNP  165 (305)
                      ...+                .++++++.+.+.. ++.+|+..||-
T Consensus        89 vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~  117 (358)
T 4e21_A           89 VPAA----------------VVDSMLQRMTPLLAANDIVIDGGNS  117 (358)
T ss_dssp             SCGG----------------GHHHHHHHHGGGCCTTCEEEECSSC
T ss_pred             CCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCC
Confidence            6321                2444556666665 67777776653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.72  E-value=5.8e-05  Score=61.22  Aligned_cols=95  Identities=12%  Similarity=0.111  Sum_probs=62.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      .+||+|||+ |.+|..++..|...|.  +|.++|+++.+..  ++.... ...+..   ..+++++++++|+||.+.+.+
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~--~~a~~~-~~~~~~---~~~~~~~~~~~Divi~at~~~   91 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQY--KVTVAGRNIDHVR--AFAEKY-EYEYVL---INDIDSLIKNNDVIITATSSK   91 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTC--EEEEEESCHHHHH--HHHHHH-TCEEEE---CSCHHHHHHTCSEEEECSCCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCHHHHH--HHHHHh-CCceEe---ecCHHHHhcCCCEEEEeCCCC
Confidence            349999998 9999999998888776  6999998752221  111111 112221   346778899999999987654


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~  168 (305)
                      .. -...                  ....|..+++.+++|.|+
T Consensus        92 ~~-~~~~------------------~~l~~g~~vid~~~p~~~  115 (144)
T 3oj0_A           92 TP-IVEE------------------RSLMPGKLFIDLGNPPNI  115 (144)
T ss_dssp             SC-SBCG------------------GGCCTTCEEEECCSSCSB
T ss_pred             Cc-EeeH------------------HHcCCCCEEEEccCCccC
Confidence            21 1110                  112357889999999875

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=97.72  E-value=0.0001  Score=70.23  Aligned_cols=115  Identities=10%  Similarity=0.090  Sum_probs=71.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh-----hhhhhcc-------cCCceEEEEecC----CC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHM-------DTNAVVRGFLGQ----QQ  107 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~-----~~DL~~~-------~~~~~v~~~~~t----~d  107 (305)
                      ..+++|.|+||+|++|+.++..|...|.  +|+++++++....     ...+...       .....+..+.+.    .+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~  144 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD  144 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence            3456999999999999999999977776  9999998763111     1111110       001233332211    12


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +. ++.++|+||.+|+.... .....+.+..|+.....+++.+.+ ....+|.+.|
T Consensus       145 l~-~~~~~d~Vih~A~~~~~-~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS  197 (427)
T 4f6c_A          145 VV-LPENMDTIIHAGARTDH-FGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVST  197 (427)
T ss_dssp             CC-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEE
T ss_pred             CC-CcCCCCEEEECCcccCC-CCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECc
Confidence            22 56899999999986532 234556778899999999999998 4344444433

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.72  E-value=5e-05  Score=64.46  Aligned_cols=103  Identities=17%  Similarity=0.207  Sum_probs=66.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHh---CCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL---TGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al---~~aDiVIi~a  122 (305)
                      +|||.|+||+|++|+.++..|+ .|.  +|+++|++.. ....|+.+..            +.++++   ...|+||.++
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~~-~~~~D~~~~~------------~~~~~~~~~~~~d~vi~~a   66 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHSG-DVTVDITNID------------SIKKMYEQVGKVDAIVSAT   66 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSSS-SEECCTTCHH------------HHHHHHHHHCCEEEEEECC
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCcc-ceeeecCCHH------------HHHHHHHHhCCCCEEEECC
Confidence            3689999999999999999998 887  9999998652 1122333221            122333   3589999999


Q ss_pred             CCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecC
Q 021932          123 GVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISN  164 (305)
Q Consensus       123 g~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tN  164 (305)
                      |......   .+   ..+.+..|+.....+.+.+.+.-. .+.++++|.
T Consensus        67 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  115 (202)
T 3d7l_A           67 GSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTG  115 (202)
T ss_dssp             CCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECC
T ss_pred             CCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            8643211   11   234456788777788777776532 255665553

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.72  E-value=0.00032  Score=62.44  Aligned_cols=117  Identities=19%  Similarity=0.194  Sum_probs=68.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al------  112 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.......++..+.. -+|   .++.+      
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   89 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   89 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  9999998752  222223322100122332211 122   22223      


Q ss_pred             -CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecC
Q 021932          113 -TGMDIVIIPAGVPRKPG----MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~g----~~---r~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                       ...|++|.+||.....+    .+   ....+..|+    ...+.+.+.+.+... +.|+++|.
T Consensus        90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS  152 (267)
T 1iy8_A           90 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGS-GMVVNTAS  152 (267)
T ss_dssp             HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEEcc
Confidence             26899999999753311    11   223455565    345566666666543 45555543

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.71  E-value=0.00033  Score=61.42  Aligned_cols=114  Identities=17%  Similarity=0.226  Sum_probs=67.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceE-EEEe-cCCC---HHHH----
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVV-RGFL-GQQQ---LEDA----  111 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v-~~~~-~t~d---~~~a----  111 (305)
                      +.+.++|.|+||+|.+|..++..|++.|.  +|+++|+++.  .....++.     ..+ ..+. .-+|   .+++    
T Consensus         8 ~~~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   80 (254)
T 2wsb_A            8 RLDGACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELG-----AAVAARIVADVTDAEAMTAAAAEA   80 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----ccceeEEEEecCCHHHHHHHHHHH
Confidence            34456899999999999999999999998  8999998752  11112221     111 1111 1112   2222    


Q ss_pred             --hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          112 --LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       112 --l~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                        +.+.|++|.+||......   .+   ..+.+..|+..    .+.+.+.+.+.. .+.|+++|.
T Consensus        81 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS  144 (254)
T 2wsb_A           81 EAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGS  144 (254)
T ss_dssp             HHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence              257899999999653211   11   23445566655    555555555554 345555553

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.71  E-value=5e-05  Score=70.20  Aligned_cols=68  Identities=18%  Similarity=0.120  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCC---c--hhhhhhhcccCCceEEEEecCCCHHHHhCCCCEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT---P--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~---~--g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiV  118 (305)
                      +++||+|||+ |.+|..++..|+..| +  +|.++|+++.   +  .....+....    +  .  +++.++++++||+|
T Consensus        23 M~m~IgvIG~-G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~~g----~--~--~~s~~e~~~~aDvV   91 (317)
T 4ezb_A           23 MMTTIAFIGF-GEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAELG----V--E--PLDDVAGIACADVV   91 (317)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHHTT----C--E--EESSGGGGGGCSEE
T ss_pred             cCCeEEEECc-cHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHHCC----C--C--CCCHHHHHhcCCEE
Confidence            3479999998 999999999999999 7  9999998741   1  1122222211    1  1  10456889999999


Q ss_pred             EEcCC
Q 021932          119 IIPAG  123 (305)
Q Consensus       119 Ii~ag  123 (305)
                      |++..
T Consensus        92 i~avp   96 (317)
T 4ezb_A           92 LSLVV   96 (317)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            99864

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.71  E-value=0.00012  Score=67.72  Aligned_cols=96  Identities=18%  Similarity=0.177  Sum_probs=60.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc-c-----C-Cc-eEEEEecCCCHHHHhCCCCE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-D-----T-NA-VVRGFLGQQQLEDALTGMDI  117 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~-~-----~-~~-~v~~~~~t~d~~~al~~aDi  117 (305)
                      +|||+|||+ |.+|..++..|...|+  +|.++|+++....  .+... .     . .. ..+....+++++++++++|+
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~   78 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIK--EIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADV   78 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSE
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHhcCCeEEeccccccccccceecCCHHHHHhcCCE
Confidence            479999998 9999999999999887  8999998752111  11110 0     0 00 00000012467778899999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe
Q 021932          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI  162 (305)
Q Consensus       118 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~  162 (305)
                      ||++....    .            ..++++.+.... ++.+|+..
T Consensus        79 vi~~v~~~----~------------~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           79 ILIVVPAI----H------------HASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             EEECSCGG----G------------HHHHHHHHGGGCCTTCEEEES
T ss_pred             EEEeCCch----H------------HHHHHHHHHHhCCCCCEEEEc
Confidence            99996422    0            135556666655 56655554

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.70  E-value=6.2e-05  Score=66.44  Aligned_cols=115  Identities=15%  Similarity=0.112  Sum_probs=73.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---HHHHhC-----
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDALT-----  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al~-----  113 (305)
                      .++|.|+||+|.+|..++..|+. .|.  +|++++++.  ......++....  .++..+. .-+|   .++.++     
T Consensus         4 ~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            4 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999 888  899999875  222223333221  1222211 1122   223333     


Q ss_pred             --CCCEEEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          114 --GMDIVIIPAGVPRKPG------MTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       114 --~aDiVIi~ag~~~~~g------~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                        +.|+||.+||......      ......+..|+.....+.+.+.+.. +.+.|+++|.
T Consensus        80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           80 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             cCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence              8999999998653221      1123457788888888888887764 3456666654

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.70  E-value=0.00013  Score=64.52  Aligned_cols=114  Identities=18%  Similarity=0.224  Sum_probs=70.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCC---HHHHhC-------C
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-------G  114 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~-------~  114 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++......++...  ..++..+.. -+|   .+++++       +
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (255)
T 2q2v_A            4 GKTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDPAPALAEIARH--GVKAVHHPADLSDVAQIEALFALAEREFGG   79 (255)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHHTT--SCCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHhc--CCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999998  89999987542222333321  122322211 112   333344       8


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       115 aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      .|++|.+||......   .+   ....+..|+.    ..+.+.+.+.+.. .+.|+++|.
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS  138 (255)
T 2q2v_A           80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN-WGRIINIAS  138 (255)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcC
Confidence            999999999653211   11   2345566766    6666777776654 355665553

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.70  E-value=0.00017  Score=65.30  Aligned_cols=66  Identities=15%  Similarity=0.341  Sum_probs=48.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++||+|||+ |.+|..++..|...|+  +|.++|+++..  ...+.+.    .+..   .++++++++++|+||++..
T Consensus         4 ~~~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~----g~~~---~~~~~~~~~~~D~vi~~vp   69 (301)
T 3cky_A            4 SIKIGFIGL-GAMGKPMAINLLKEGV--TVYAFDLMEAN--VAAVVAQ----GAQA---CENNQKVAAASDIIFTSLP   69 (301)
T ss_dssp             CCEEEEECC-CTTHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHTT----TCEE---CSSHHHHHHHCSEEEECCS
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHC----CCee---cCCHHHHHhCCCEEEEECC
Confidence            469999998 9999999999998888  89999986521  1122221    1222   2467788899999999863

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.70  E-value=0.00019  Score=62.69  Aligned_cols=116  Identities=19%  Similarity=0.218  Sum_probs=63.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHhC----
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT----  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D-~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~----  113 (305)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++| .++.  .....++...  ..++..+.. -+|   .+++++    
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAA--GINVVVAKGDVKNPEDVENMVKTAMD   79 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHT--TCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            446899999999999999999999998  899984 4432  1122223221  122332211 122   222232    


Q ss_pred             ---CCCEEEEcCCCCCCC------CCchhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 021932          114 ---GMDIVIIPAGVPRKP------GMTRDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNP  165 (305)
Q Consensus       114 ---~aDiVIi~ag~~~~~------g~~r~d~~~~N~~i~~~i~~~----I~~~~p~aiviv~tNP  165 (305)
                         +.|+||.+||.....      .+...+.+..|+.....+.+.    +.+.. .+.|+++|..
T Consensus        80 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~  143 (247)
T 2hq1_A           80 AFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQK-SGKIINITSI  143 (247)
T ss_dssp             HHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECC-
T ss_pred             hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCh
Confidence               799999999864311      122345566777664444444    43333 4556666543

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.69  E-value=3.4e-05  Score=59.39  Aligned_cols=72  Identities=28%  Similarity=0.359  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCchhhhhhhcccCCceEEEEe--cCCCHHHHhCCCCEEEEc
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL--GQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi~  121 (305)
                      +++||.|+|+ |.+|..++..|...| .  +|+++|+++....  .+.+.  ........  ...++++.++++|+||.+
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~--~v~~~~r~~~~~~--~~~~~--~~~~~~~d~~~~~~~~~~~~~~d~vi~~   76 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNY--SVTVADHDLAALA--VLNRM--GVATKQVDAKDEAGLAKALGGFDAVISA   76 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSE--EEEEEESCHHHHH--HHHTT--TCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCc--eEEEEeCCHHHHH--HHHhC--CCcEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            3469999999 999999999999988 5  8999998752111  11111  11111111  112455678999999999


Q ss_pred             CC
Q 021932          122 AG  123 (305)
Q Consensus       122 ag  123 (305)
                      ++
T Consensus        77 ~~   78 (118)
T 3ic5_A           77 AP   78 (118)
T ss_dssp             SC
T ss_pred             CC
Confidence            85

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.69  E-value=0.0002  Score=63.86  Aligned_cols=97  Identities=12%  Similarity=0.021  Sum_probs=61.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d~~~al~~aDiVIi~ag  123 (305)
                      ++|||.|+|| |++|++++..|+..|+  +|+.++++....  ..+...    .++.+.+ -+|+ + ++++|+||.+++
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~----~~~~~~~D~~d~-~-~~~~d~vi~~a~   72 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAPQGW--RIIGTSRNPDQM--EAIRAS----GAEPLLWPGEEP-S-LDGVTHLLISTA   72 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGGGTC--EEEEEESCGGGH--HHHHHT----TEEEEESSSSCC-C-CTTCCEEEECCC
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHCCC--EEEEEEcChhhh--hhHhhC----CCeEEEeccccc-c-cCCCCEEEECCC
Confidence            3579999998 9999999999999998  999999865221  112211    1222211 2344 3 899999999998


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHh--CCCcEEEEec
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKC--CPKAIVNLIS  163 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~--~p~aiviv~t  163 (305)
                      .....           .+..+.+++.+++.  +...+|.+.|
T Consensus        73 ~~~~~-----------~~~~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           73 PDSGG-----------DPVLAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             CBTTB-----------CHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             ccccc-----------cHHHHHHHHHHHhhcCCceEEEEeec
Confidence            54221           12245666777763  3344444433

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.69  E-value=0.00031  Score=63.07  Aligned_cols=139  Identities=18%  Similarity=0.239  Sum_probs=76.9

Q ss_pred             CCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCC
Q 021932           20 HPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTN   96 (305)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~   96 (305)
                      |.++.-..-.+.+|+++....  +.+.+++.|+||+|.+|..++..|+..|.  +|++.|.+.   ......++....  
T Consensus         7 ~~~~~~~~~~~~~~~~mm~~~--~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~--   80 (271)
T 3v2g_A            7 HSSGVDLGTENLYFQSMMTSI--SLAGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAG--   80 (271)
T ss_dssp             -------------CHHHHTTT--CCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--
T ss_pred             ccccccccccccchhhhcccc--CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--
Confidence            334444444455777765432  33445899999999999999999999998  899998765   122223333221  


Q ss_pred             ceEEEEec-CCC---HHHHhC-------CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcE
Q 021932           97 AVVRGFLG-QQQ---LEDALT-------GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAI  158 (305)
Q Consensus        97 ~~v~~~~~-t~d---~~~al~-------~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~~-p~ai  158 (305)
                      .++..+.. -+|   .++.++       ..|++|.+||......   .+   ....+..|+.....+.+.+.+.- ..+.
T Consensus        81 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~  160 (271)
T 3v2g_A           81 GRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGR  160 (271)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCE
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCE
Confidence            22222211 122   222333       7899999999753221   11   23456677777666777666653 3456


Q ss_pred             EEEecC
Q 021932          159 VNLISN  164 (305)
Q Consensus       159 viv~tN  164 (305)
                      |++++.
T Consensus       161 iv~isS  166 (271)
T 3v2g_A          161 IITIGS  166 (271)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            666654

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.69  E-value=8.1e-05  Score=67.07  Aligned_cols=96  Identities=18%  Similarity=0.131  Sum_probs=60.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C--c--hhhh---hhhcccCCceEEEEe--cCCCHHHHhCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--P--GVTA---DISHMDTNAVVRGFL--GQQQLEDALTGM  115 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~--~--g~~~---DL~~~~~~~~v~~~~--~t~d~~~al~~a  115 (305)
                      ++||.|+||+|++|++++..|+..|+  +|++++++. .  .  ....   ++...  ...+....  ...++.++++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~l~~~--~v~~v~~D~~d~~~l~~~~~~~   77 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEELIDNYQSL--GVILLEGDINDHETLVKAIKQV   77 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHHHHHHHHT--TCEEEECCTTCHHHHHHHHTTC
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHHHHHHHhC--CCEEEEeCCCCHHHHHHHHhCC
Confidence            45899999999999999999998887  889999875 1  0  1111   22211  11111111  112456788999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcE
Q 021932          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAI  158 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~ai  158 (305)
                      |+||.+++...             ....+.+++.+.+.+ .+-+
T Consensus        78 d~vi~~a~~~~-------------~~~~~~l~~aa~~~g~v~~~  108 (307)
T 2gas_A           78 DIVICAAGRLL-------------IEDQVKIIKAIKEAGNVKKF  108 (307)
T ss_dssp             SEEEECSSSSC-------------GGGHHHHHHHHHHHCCCSEE
T ss_pred             CEEEECCcccc-------------cccHHHHHHHHHhcCCceEE
Confidence            99999987542             122345666677665 4443

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.69  E-value=0.00014  Score=66.52  Aligned_cols=77  Identities=16%  Similarity=0.267  Sum_probs=56.9

Q ss_pred             CCEEEEEc-CCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           46 GFKVAVLG-AAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        46 ~~KI~IIG-aaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ++||+||| + |.+|..++..|...|+  +|.++|+++.                      .+..+++++||+||++...
T Consensus        21 ~~~I~iIGg~-G~mG~~la~~l~~~G~--~V~~~~~~~~----------------------~~~~~~~~~aDvVilavp~   75 (298)
T 2pv7_A           21 IHKIVIVGGY-GKLGGLFARYLRASGY--PISILDREDW----------------------AVAESILANADVVIVSVPI   75 (298)
T ss_dssp             CCCEEEETTT-SHHHHHHHHHHHTTTC--CEEEECTTCG----------------------GGHHHHHTTCSEEEECSCG
T ss_pred             CCEEEEEcCC-CHHHHHHHHHHHhCCC--eEEEEECCcc----------------------cCHHHHhcCCCEEEEeCCH
Confidence            35899999 7 9999999999999898  8999997642                      0245788999999998632


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                      .                .+.++++.+..+. |+++|+.++
T Consensus        76 ~----------------~~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           76 N----------------LTLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             G----------------GHHHHHHHHGGGCCTTSEEEECC
T ss_pred             H----------------HHHHHHHHHHhhcCCCcEEEECC
Confidence            1                1455556666654 677666553

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.68  E-value=0.00032  Score=62.17  Aligned_cols=117  Identities=19%  Similarity=0.260  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHhC-----
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-----  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~-----  113 (305)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++........+..+.. -+|   .+++++     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDL   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999998  8999998752  222223321100112332211 122   223343     


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          114 -GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 -~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                       +.|++|.+||......   .+   ....+..|+...    +.+.+.+.+... +.|+++|.
T Consensus        84 ~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS  144 (260)
T 2z1n_A           84 GGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGW-GRMVYIGS  144 (260)
T ss_dssp             TCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC-EEEEEECC
T ss_pred             cCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEECc
Confidence             5999999999643211   11   233455665544    556666655543 45555553

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.68  E-value=6e-05  Score=68.55  Aligned_cols=95  Identities=16%  Similarity=0.153  Sum_probs=61.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chh-hhhhhcccCCceEEEEe--cCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV-TADISHMDTNAVVRGFL--GQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~-~~DL~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi~a  122 (305)
                      +||.|+||+|++|++++..|+..|+  +|++++++.. ... ..++...  ...+....  ...++.++++++|+||.++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~l~~~--~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a   87 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPNSSKTTLLDEFQSL--GAIIVKGELDEHEKLVELMKKVDVVISAL   87 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTTCSCHHHHHHHHHT--TCEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC--cEEEEECCCCchhhHHHHhhcC--CCEEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            4899999999999999999999987  8999998752 221 1122221  11111111  1124667889999999998


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcE
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAI  158 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~ai  158 (305)
                      +...             ....+.+++.+.+.+ .+-+
T Consensus        88 ~~~~-------------~~~~~~l~~aa~~~g~v~~~  111 (318)
T 2r6j_A           88 AFPQ-------------ILDQFKILEAIKVAGNIKRF  111 (318)
T ss_dssp             CGGG-------------STTHHHHHHHHHHHCCCCEE
T ss_pred             chhh-------------hHHHHHHHHHHHhcCCCCEE
Confidence            7431             222456667777665 4443

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.68  E-value=0.00027  Score=63.27  Aligned_cols=119  Identities=20%  Similarity=0.256  Sum_probs=70.7

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--------------chhhhhhhcccCCceEEEEec-CC
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--------------PGVTADISHMDTNAVVRGFLG-QQ  106 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--------------~g~~~DL~~~~~~~~v~~~~~-t~  106 (305)
                      ...+.+++.|+||+|.+|..++..|+..|.  +|+++|+++.              .....++...  ..++..+.. -+
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~   84 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDI--GSRIVARQADVR   84 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH--TCCEEEEECCTT
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhc--CCeEEEEeCCCC
Confidence            334456899999999999999999999998  8999998620              1111122221  123332211 12


Q ss_pred             C---HHHHh-------CCCCEEEEcCCCCCCCC--CchhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          107 Q---LEDAL-------TGMDIVIIPAGVPRKPG--MTRDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       107 d---~~~al-------~~aDiVIi~ag~~~~~g--~~r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      |   .++.+       ...|++|.+||......  ++..+.+..|+.    +.+.+.+.+.+....+.|+++|.
T Consensus        85 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  158 (278)
T 3sx2_A           85 DRESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISS  158 (278)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence            2   22233       37899999999753221  112344555654    44555555666555677777764

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.67  E-value=0.00014  Score=63.41  Aligned_cols=114  Identities=19%  Similarity=0.237  Sum_probs=67.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHhC------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT------  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~------  113 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++.... ...+..+.. -+|   ++++++      
T Consensus         7 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (248)
T 2pnf_A            7 GKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIYNLV   83 (248)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999998  9999998652  11122222200 112222211 112   233333      


Q ss_pred             -CCCEEEEcCCCCCCCC---C---chhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEec
Q 021932          114 -GMDIVIIPAGVPRKPG---M---TRDDLFNINAGIV----KTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       114 -~aDiVIi~ag~~~~~g---~---~r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~t  163 (305)
                       +.|+||.+||......   .   +..+.+..|+...    +.+.+.+.+.. .+.|+++|
T Consensus        84 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~s  143 (248)
T 2pnf_A           84 DGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR-WGRIVNIS  143 (248)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT-CEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEc
Confidence             8999999998653211   1   1234566676666    44445554443 34555554

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.67  E-value=6.4e-05  Score=69.08  Aligned_cols=117  Identities=8%  Similarity=0.113  Sum_probs=71.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc-----CC-ceEEEEecCCCHHHHhCCCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TN-AVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~-----~~-~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      +|||+|||+ |.+|..++..|. .|.  +|.++++++....  .+....     .. ......  +.+ .++.+++|+||
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~--~V~~~~r~~~~~~--~l~~~G~~~~~~~~~~~~~~--~~~-~~~~~~~D~vi   72 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS-LYH--DVTVVTRRQEQAA--AIQSEGIRLYKGGEEFRADC--SAD-TSINSDFDLLV   72 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHH--HHHHHCEEEEETTEEEEECC--EEE-SSCCSCCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCC--ceEEEECCHHHHH--HHHhCCceEecCCCeecccc--ccc-ccccCCCCEEE
Confidence            479999999 999999999998 887  9999998652111  111100     00 011111  111 24578999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-eehh
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLD  195 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t~Ld  195 (305)
                      ++.-    +.            -+.++++.++...++. |+.+.|-++..     +.+.+  -+|.++|++- +...
T Consensus        73 lavK----~~------------~~~~~l~~l~~~~~~~-ivs~~nGi~~~-----e~l~~--~~~~~~vl~g~~~~~  125 (307)
T 3ego_A           73 VTVK----QH------------QLQSVFSSLERIGKTN-ILFLQNGMGHI-----HDLKD--WHVGHSIYVGIVEHG  125 (307)
T ss_dssp             ECCC----GG------------GHHHHHHHTTSSCCCE-EEECCSSSHHH-----HHHHT--CCCSCEEEEEEECCE
T ss_pred             EEeC----HH------------HHHHHHHHhhcCCCCe-EEEecCCccHH-----HHHHH--hCCCCcEEEEEEeec
Confidence            9852    11            1344556666555666 77788988743     22333  3688888754 4443

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.66  E-value=0.0004  Score=61.06  Aligned_cols=104  Identities=16%  Similarity=0.213  Sum_probs=67.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch---hhhhhhcccCCceEEEEecCCCHHHHh----CCCCEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTNAVVRGFLGQQQLEDAL----TGMDIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g---~~~DL~~~~~~~~v~~~~~t~d~~~al----~~aDiVI  119 (305)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|+++...   ...|+.+..            +.++++    ...|++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~Dl~~~~------------~v~~~~~~~~~~id~lv   67 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVIADLSTAEGRKQ------------AIADVLAKCSKGMDGLV   67 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHHH------------HHHHHHTTCTTCCSEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhhccccccCCCCHH------------HHHHHHHHhCCCCCEEE
Confidence            4799999999999999999999998  899999876211   223444321            123333    4559999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCC
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNP  165 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tNP  165 (305)
                      .+||..... ....+.+..|+.....+.+.+.+.   ...+.|+++|..
T Consensus        68 ~~Ag~~~~~-~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~  115 (257)
T 1fjh_A           68 LCAGLGPQT-KVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSV  115 (257)
T ss_dssp             ECCCCCTTC-SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred             ECCCCCCCc-ccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECCh
Confidence            999975412 224556677766655555555432   223556666543

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=97.66  E-value=0.00016  Score=73.02  Aligned_cols=110  Identities=15%  Similarity=0.086  Sum_probs=73.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-CC----HHHHhCCCCEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ----LEDALTGMDIV  118 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-~d----~~~al~~aDiV  118 (305)
                      ++++|.|+||+|++|++++..|+.. |+  +|+++|++....  .++..   ...+..+.+. +|    ++++++++|+|
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~--~V~~~~r~~~~~--~~~~~---~~~v~~v~~Dl~d~~~~~~~~~~~~D~V  386 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVV  386 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSE--EEEEEESCCTTT--GGGTT---CTTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCC--EEEEEEcCchhh--hhhcc---CCceEEEECCCCCcHHHHHHhhcCCCEE
Confidence            4579999999999999999999887 77  999999865211  11111   1123322111 11    34567899999


Q ss_pred             EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       119 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |.+|+.....  ..+..+.+..|+.....+++.+.+.+ . .++.+|
T Consensus       387 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~-r~V~~S  431 (660)
T 1z7e_A          387 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K-RIIFPS  431 (660)
T ss_dssp             EECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-C-EEEEEC
T ss_pred             EECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-C-EEEEEe
Confidence            9999865321  12334567789999999999998876 4 444444

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.65  E-value=0.00025  Score=64.55  Aligned_cols=116  Identities=21%  Similarity=0.210  Sum_probs=68.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCCH---H-------H
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---E-------D  110 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d~---~-------~  110 (305)
                      .+.+++.|+||+|.+|..++..|+..|.  +|+++|+++  +.....++.... ..++..+.. -+|.   +       +
T Consensus        39 l~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~  115 (293)
T 3rih_A           39 LSARSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVVD  115 (293)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999998  999999876  222233443321 123333211 1222   1       2


Q ss_pred             HhCCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHH----HHHHHHHhCCCcEEEEec
Q 021932          111 ALTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       111 al~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~----i~~~I~~~~p~aiviv~t  163 (305)
                      .+...|++|.+||.....   ..+   ....+..|+.....    +.+.+.+... +.||+++
T Consensus       116 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iV~is  177 (293)
T 3rih_A          116 AFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGR-GRVILTS  177 (293)
T ss_dssp             HHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSS-CEEEEEC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEe
Confidence            234779999999964321   112   23345666554444    4444455554 4455554

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.65  E-value=0.00026  Score=69.58  Aligned_cols=101  Identities=14%  Similarity=0.120  Sum_probs=67.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhc-ccCCceEEEEecCCCHHHHhCC---CCEEE
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTNAVVRGFLGQQQLEDALTG---MDIVI  119 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~-~~~~~~v~~~~~t~d~~~al~~---aDiVI  119 (305)
                      .+..||+|||+ |.+|..+|..|+..|+  +|.++|+++.+  +.++.. ......+..   +.++++++++   +|+||
T Consensus         8 ~~~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~~~gi~~---~~s~~e~v~~l~~aDvVi   79 (497)
T 2p4q_A            8 HMSADFGLIGL-AVMGQNLILNAADHGF--TVCAYNRTQSK--VDHFLANEAKGKSIIG---ATSIEDFISKLKRPRKVM   79 (497)
T ss_dssp             -CCCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSHH--HHHHHHTTTTTSSEEC---CSSHHHHHHTSCSSCEEE
T ss_pred             cCCCCEEEEee-HHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHcccccCCCeEE---eCCHHHHHhcCCCCCEEE
Confidence            34568999999 9999999999999998  99999997622  122222 100012332   3467777776   99999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd  167 (305)
                      ++...+               +.++++++.+.... |+.+||..+|-..
T Consensus        80 l~Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~s~~~~  113 (497)
T 2p4q_A           80 LLVKAG---------------APVDALINQIVPLLEKGDIIIDGGNSHF  113 (497)
T ss_dssp             ECCCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             EEcCCh---------------HHHHHHHHHHHHhCCCCCEEEECCCCCh
Confidence            986321               12555566777665 5677777777543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.65  E-value=0.001  Score=54.42  Aligned_cols=72  Identities=13%  Similarity=0.136  Sum_probs=46.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCC---HHHH-hCCCCEEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~~a-l~~aDiVIi  120 (305)
                      ..++|.|+|+ |.+|..++..|...|.  +|+++|.++...  ..+.... ...+. .....+   +.++ ++++|+||+
T Consensus        18 ~~~~v~IiG~-G~iG~~la~~L~~~g~--~V~vid~~~~~~--~~~~~~~-g~~~~-~~d~~~~~~l~~~~~~~ad~Vi~   90 (155)
T 2g1u_A           18 KSKYIVIFGC-GRLGSLIANLASSSGH--SVVVVDKNEYAF--HRLNSEF-SGFTV-VGDAAEFETLKECGMEKADMVFA   90 (155)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCGGGG--GGSCTTC-CSEEE-ESCTTSHHHHHTTTGGGCSEEEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHH--HHHHhcC-CCcEE-EecCCCHHHHHHcCcccCCEEEE
Confidence            3469999998 9999999999999887  999999875221  1122010 11111 111112   2223 678999999


Q ss_pred             cCC
Q 021932          121 PAG  123 (305)
Q Consensus       121 ~ag  123 (305)
                      +.+
T Consensus        91 ~~~   93 (155)
T 2g1u_A           91 FTN   93 (155)
T ss_dssp             CSS
T ss_pred             EeC
Confidence            875

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.64  E-value=0.00036  Score=61.57  Aligned_cols=105  Identities=16%  Similarity=0.137  Sum_probs=63.7

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhcccCCceEEEEec-CC---CHHHHhC--
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLG-QQ---QLEDALT--  113 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~~~~~~~v~~~~~-t~---d~~~al~--  113 (305)
                      ++.+.++|.|+||+|.+|..++..|+..|.  +|+++|++...  ....++.     .++..+.. -+   +.+++++  
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~   80 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG-----NNCVFAPADVTSEKDVQTALALA   80 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHH
Confidence            334456899999999999999999999998  99999987622  1122221     11222111 11   2233333  


Q ss_pred             -----CCCEEEEcCCCCCCCC---------Cc---hhhHHHhhHHHHHHHHHHHHHh
Q 021932          114 -----GMDIVIIPAGVPRKPG---------MT---RDDLFNINAGIVKTLCEGIAKC  153 (305)
Q Consensus       114 -----~aDiVIi~ag~~~~~g---------~~---r~d~~~~N~~i~~~i~~~I~~~  153 (305)
                           ..|++|.+||......         .+   ....+..|+.....+.+.+.+.
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~  137 (265)
T 2o23_A           81 KGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGE  137 (265)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                 8999999998653211         11   2345566766555555555443

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.64  E-value=0.00017  Score=64.79  Aligned_cols=91  Identities=11%  Similarity=0.030  Sum_probs=58.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      +||+|||+ |.+|..++..|.. |+  +|.++|+++....  .+....    +...   + ++++++++|+||++...+ 
T Consensus         2 ~~i~iiG~-G~~G~~~a~~l~~-g~--~V~~~~~~~~~~~--~~~~~g----~~~~---~-~~~~~~~~D~vi~~v~~~-   66 (289)
T 2cvz_A            2 EKVAFIGL-GAMGYPMAGHLAR-RF--PTLVWNRTFEKAL--RHQEEF----GSEA---V-PLERVAEARVIFTCLPTT-   66 (289)
T ss_dssp             CCEEEECC-STTHHHHHHHHHT-TS--CEEEECSSTHHHH--HHHHHH----CCEE---C-CGGGGGGCSEEEECCSSH-
T ss_pred             CeEEEEcc-cHHHHHHHHHHhC-CC--eEEEEeCCHHHHH--HHHHCC----Cccc---C-HHHHHhCCCEEEEeCCCh-
Confidence            58999998 9999999999988 87  8999998762211  111111    1111   1 356789999999986322 


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 021932          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (305)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPv  166 (305)
                                    ..++++++.+.+.. ++.+++..+|..
T Consensus        67 --------------~~~~~v~~~l~~~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           67 --------------REVYEVAEALYPYLREGTYWVDATSGE   93 (289)
T ss_dssp             --------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                          11334445555444 566777667644

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.63  E-value=0.00017  Score=63.99  Aligned_cols=112  Identities=18%  Similarity=0.256  Sum_probs=67.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHHhC------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDALT------  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al~------  113 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++..  .....++..     .+..+. .-+|   .++.++      
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   80 (259)
T 4e6p_A            8 GKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIGP-----AAYAVQMDVTRQDSIDAAIAATVEHA   80 (259)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----CceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  8999998752  222222211     111111 1112   223333      


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          114 -GMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 -~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                       +.|++|.+||......   .+   ..+.+..|+.    +.+.+.+.+.+..+.+.|+++|.
T Consensus        81 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  142 (259)
T 4e6p_A           81 GGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMAS  142 (259)
T ss_dssp             SSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence             8999999999743211   11   2334556655    44555555555555667777654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.61  E-value=0.00065  Score=60.32  Aligned_cols=114  Identities=20%  Similarity=0.132  Sum_probs=70.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-------C
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------T  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------~  113 (305)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++........+..+.. -+|   .++++       .
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            8 KVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            4899999999999999999999998  9999998752  111222322110122332211 122   22222       3


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhHH----HHHHHHHHHHHhC--CCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKPGMTRDDLFNINAG----IVKTLCEGIAKCC--PKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~----i~~~i~~~I~~~~--p~aiviv~tN  164 (305)
                      ..|++|.+||....  ....+.+..|+.    ..+.+.+.+.+..  +.+.|+++|.
T Consensus        86 ~id~lv~~Ag~~~~--~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS  140 (267)
T 2gdz_A           86 RLDILVNNAGVNNE--KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS  140 (267)
T ss_dssp             CCCEEEECCCCCCS--SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCEEEECCCCCCh--hhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCC
Confidence            57999999996532  234455666755    5667777776553  2466766654

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.61  E-value=0.00055  Score=59.77  Aligned_cols=114  Identities=14%  Similarity=0.152  Sum_probs=66.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHhC-------
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-------  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~-------  113 (305)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++.... ..++..+.. -+|   .+++++       
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD--RVAALDLSAETLEETARTHWHAY-ADKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHSTTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999997  8999998752  11122221110 122332211 122   223333       


Q ss_pred             CCCEEEEcCCCCCCCC------Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKPG------MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g------~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +.|++|.+||......      .+   ....+..|+...    +.+.+.+.+... +.|+++|.
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~isS  142 (250)
T 2cfc_A           80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGA-GVIVNIAS  142 (250)
T ss_dssp             CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CEEEEECC
Confidence            7999999998643211      11   223455565444    555555555543 45555543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.61  E-value=0.00093  Score=59.21  Aligned_cols=118  Identities=9%  Similarity=-0.005  Sum_probs=71.7

Q ss_pred             CCCEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEec----CCCHHHHh-----
Q 021932           45 PGFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG----QQQLEDAL-----  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~--VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al-----  112 (305)
                      +.+++.|+||+|+  +|..++..|+..|.  +|++.|+++ ......++.......++..+..    ..+.++.+     
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            3458999999988  99999999999998  899999875 2222223322211112222111    11222222     


Q ss_pred             --CCCCEEEEcCCCCCC-----C--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          113 --TGMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       113 --~~aDiVIi~ag~~~~-----~--g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                        ...|++|.+||....     +  ..+   ....+..|+.....+.+.+.+.- +.+.|+++|.
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  148 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY  148 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence              368999999987531     1  111   23455677777777777777664 3566666654

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.59  E-value=0.00023  Score=62.80  Aligned_cols=117  Identities=15%  Similarity=0.131  Sum_probs=65.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhccc-----CCceEEEEec-CCC---HHHHhCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD-----TNAVVRGFLG-QQQ---LEDALTG  114 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~-----~~~~v~~~~~-t~d---~~~al~~  114 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++....     ...++..+.. -+|   .++++++
T Consensus         7 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   84 (264)
T 2pd6_A            7 SALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ   84 (264)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence            35899999999999999999999998  8999998752  11112222110     0012222211 122   2233333


Q ss_pred             -------C-CEEEEcCCCCCCCC---C---chhhHHHhhHHHHHHHHHHHHH----hCCCcEEEEecC
Q 021932          115 -------M-DIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIAK----CCPKAIVNLISN  164 (305)
Q Consensus       115 -------a-DiVIi~ag~~~~~g---~---~r~d~~~~N~~i~~~i~~~I~~----~~p~aiviv~tN  164 (305)
                             . |+||.+||......   .   ...+.+..|+.....+.+.+.+    ....+.|+++|.
T Consensus        85 ~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  152 (264)
T 2pd6_A           85 VQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISS  152 (264)
T ss_dssp             HHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             HHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence                   3 99999998753211   1   1234556666555555554443    332456666654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.59  E-value=0.00029  Score=63.72  Aligned_cols=121  Identities=12%  Similarity=0.085  Sum_probs=71.4

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhhhhhhccc---CCceEEEEecC-CC---HHHHhC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD---TNAVVRGFLGQ-QQ---LEDALT  113 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~---~~~~v~~~~~t-~d---~~~al~  113 (305)
                      ..+.++|.|+||+|.+|..++..|+..|.  +|+++|++.  ......++....   ...++..+... +|   +++.++
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~   92 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK   92 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHH
Confidence            34456899999999999999999999998  899999875  222223333210   11233332111 22   222333


Q ss_pred             -------CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 021932          114 -------GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNP  165 (305)
Q Consensus       114 -------~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~~---p~aiviv~tNP  165 (305)
                             ..|+||.+||......   .+   ....+..|+.....+.+.+.+..   ..+.|++++..
T Consensus        93 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~  160 (303)
T 1yxm_A           93 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVP  160 (303)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEee
Confidence                   5899999998543211   11   23456677776666666654421   23556666543

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.59  E-value=0.00021  Score=67.83  Aligned_cols=95  Identities=16%  Similarity=0.141  Sum_probs=58.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEe---CCCCchhhhh-hhccc------CCce--EE--E-E-ecCCCH
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYD---VVNTPGVTAD-ISHMD------TNAV--VR--G-F-LGQQQL  108 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D---~~~~~g~~~D-L~~~~------~~~~--v~--~-~-~~t~d~  108 (305)
                      +|||+|||+ |.+|..+|..|+. .|+  +|.++|   +++.  .... +....      ....  +.  . . ..++|+
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~--~V~~~~~~~r~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGV--EVRVLTLFADEAE--RWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDP   76 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTE--EEEEECCSTTHHH--HHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCC--EEEEEeCCCCcHH--HHHHHHhhccceeeeecCCCccceeeccceEEeCCH
Confidence            479999999 9999999999987 487  999999   4321  1111 11100      0000  11  0 0 023577


Q ss_pred             HHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEE
Q 021932          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNL  161 (305)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv  161 (305)
                      +++++++|+||++....                ...++++.+..+. |+.+|+.
T Consensus        77 ~~a~~~aD~Vilav~~~----------------~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           77 EIAISGADVVILTVPAF----------------AHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             HHHHTTCSEEEECSCGG----------------GHHHHHHHHTTTCCTTCEEEE
T ss_pred             HHHhCCCCEEEEeCchH----------------HHHHHHHHHHhhCCCCcEEEE
Confidence            78899999999986321                1345666777665 5665544

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.59  E-value=0.00023  Score=69.58  Aligned_cols=98  Identities=13%  Similarity=0.156  Sum_probs=63.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc-c---CCceEEEEecCCCHHHHhC---CCCEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-D---TNAVVRGFLGQQQLEDALT---GMDIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~-~---~~~~v~~~~~t~d~~~al~---~aDiVI  119 (305)
                      |||+|||+ |.+|..++..|+..|+  +|.++|+++.+.  .++... .   ....+..   +++++++++   ++|+||
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~--~~l~~~~g~~~~~~~i~~---~~~~~e~v~~l~~aDvVi   73 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKS--EEFMKANASAPFAGNLKA---FETMEAFAASLKKPRKAL   73 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHH--HHHHHHTTTSTTGGGEEE---CSCHHHHHHHBCSSCEEE
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHhcCCCCCCCCeEE---ECCHHHHHhcccCCCEEE
Confidence            68999998 9999999999999998  899999865211  111111 0   0112332   346666665   599999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd  167 (305)
                      ++...+               ..++++++.+.... |+.+|+..+|-..
T Consensus        74 laVp~~---------------~~v~~vl~~l~~~l~~g~iIId~sng~~  107 (478)
T 1pgj_A           74 ILVQAG---------------AATDSTIEQLKKVFEKGDILVDTGNAHF  107 (478)
T ss_dssp             ECCCCS---------------HHHHHHHHHHHHHCCTTCEEEECCCCCH
T ss_pred             EecCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCCh
Confidence            986321               12344445565554 6777777777653

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.59  E-value=0.00015  Score=65.97  Aligned_cols=121  Identities=12%  Similarity=0.108  Sum_probs=71.5

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhC-----C-CCcEEEEEeCCCCchhhhhhhc-ccC---C-------ceEEEEec
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKIN-----P-LVSVLHLYDVVNTPGVTADISH-MDT---N-------AVVRGFLG  104 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~-----~-~~~el~L~D~~~~~g~~~DL~~-~~~---~-------~~v~~~~~  104 (305)
                      |+.++|||+|||+ |.+|..++..|...     | +  +|.++|+ +  .....+.. ...   .       ..+..   
T Consensus         4 m~~~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~--~~~~~l~~~~g~~~~~~~~~~~~~~~~~---   74 (317)
T 2qyt_A            4 MNQQPIKIAVFGL-GGVGGYYGAMLALRAAATDGLL--EVSWIAR-G--AHLEAIRAAGGLRVVTPSRDFLARPTCV---   74 (317)
T ss_dssp             ---CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE--EEEEECC-H--HHHHHHHHHTSEEEECSSCEEEECCSEE---
T ss_pred             CCCCCCEEEEECc-CHHHHHHHHHHHhCccccCCCC--CEEEEEc-H--HHHHHHHhcCCeEEEeCCCCeEEecceE---
Confidence            4455689999998 99999999999887     7 6  9999997 3  11122222 110   0       01111   


Q ss_pred             CCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCC
Q 021932          105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTY  183 (305)
Q Consensus       105 t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~  183 (305)
                      +++. ++++++|+||++....    .            +.++++.+..+- |+.+|+.++|..+..     +.+++  -+
T Consensus        75 ~~~~-~~~~~~D~vil~vk~~----~------------~~~v~~~i~~~l~~~~~iv~~~nG~~~~-----~~l~~--~l  130 (317)
T 2qyt_A           75 TDNP-AEVGTVDYILFCTKDY----D------------MERGVAEIRPMIGQNTKILPLLNGADIA-----ERMRT--YL  130 (317)
T ss_dssp             ESCH-HHHCCEEEEEECCSSS----C------------HHHHHHHHGGGEEEEEEEEECSCSSSHH-----HHHTT--TS
T ss_pred             ecCc-cccCCCCEEEEecCcc----c------------HHHHHHHHHhhcCCCCEEEEccCCCCcH-----HHHHH--HC
Confidence            1343 5689999999986322    1            244555666553 567777778876542     22333  35


Q ss_pred             CCCcEE-Eeeehh
Q 021932          184 DPKRLL-GVTMLD  195 (305)
Q Consensus       184 p~~kvi-G~t~Ld  195 (305)
                      |+.+++ |++..+
T Consensus       131 ~~~~v~~g~~~~~  143 (317)
T 2qyt_A          131 PDTVVWKGCVYIS  143 (317)
T ss_dssp             CTTTBCEEEEEEE
T ss_pred             CCCcEEEEEEEEE
Confidence            555554 554444

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=97.58  E-value=0.0001  Score=71.94  Aligned_cols=115  Identities=10%  Similarity=0.085  Sum_probs=71.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh-----hhhhhcc-------cCCceEEEEecC----CC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHM-------DTNAVVRGFLGQ----QQ  107 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~-----~~DL~~~-------~~~~~v~~~~~t----~d  107 (305)
                      ..+++|.|+||+|++|++++..|...+.  +|+++++......     ...+...       ....++..+.+.    ..
T Consensus       148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~  225 (508)
T 4f6l_B          148 RPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD  225 (508)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHTBTTEE--EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSS
T ss_pred             CCCCeEEEECCccchHHHHHHHHHhcCC--EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCccccc
Confidence            3457999999999999999999966666  9999998763111     1111110       012344443221    12


Q ss_pred             HHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       108 ~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +. ++.++|+||.+|+... ......++...|+...+.+++.+.+ ....++.+.|
T Consensus       226 l~-~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS  278 (508)
T 4f6l_B          226 VV-LPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVST  278 (508)
T ss_dssp             CC-CSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-TTCEEEEEEE
T ss_pred             CC-CccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh-CCCcEEEeCC
Confidence            21 5679999999998643 1223455677899999999999988 4344444444

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.58  E-value=0.00015  Score=65.36  Aligned_cols=97  Identities=18%  Similarity=0.152  Sum_probs=61.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc----hhhhhhhcccCCceEEEEec----CCCHHHHhCCCCE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTNAVVRGFLG----QQQLEDALTGMDI  117 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~----g~~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDi  117 (305)
                      ++||.|+||+|++|++++..|+..|+  +|++++++...    .....+.... ...+..+.+    ..++.++++++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~l~~~~~~~d~   80 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVKNVDV   80 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHHHHHHHH-hCCCEEEEeccCCHHHHHHHHcCCCE
Confidence            45899999999999999999999987  88999886421    1111111110 111222211    1235678899999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcE
Q 021932          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAI  158 (305)
Q Consensus       118 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~ai  158 (305)
                      ||.+++...             ....+.+++.+.+.+ .+-+
T Consensus        81 vi~~a~~~~-------------~~~~~~l~~aa~~~g~v~~~  109 (308)
T 1qyc_A           81 VISTVGSLQ-------------IESQVNIIKAIKEVGTVKRF  109 (308)
T ss_dssp             EEECCCGGG-------------SGGGHHHHHHHHHHCCCSEE
T ss_pred             EEECCcchh-------------hhhHHHHHHHHHhcCCCceE
Confidence            999987532             122355667777766 4444

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.58  E-value=0.00011  Score=64.15  Aligned_cols=111  Identities=16%  Similarity=0.134  Sum_probs=67.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh------hhhhhcccCCceEEEEecCCCHHHHh--CCCCEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV------TADISHMDTNAVVRGFLGQQQLEDAL--TGMDIV  118 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~------~~DL~~~~~~~~v~~~~~t~d~~~al--~~aDiV  118 (305)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|+++....      ..|+.+..   .+...  -....+.+  .+.|++
T Consensus         4 k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~D~~~~~---~~~~~--~~~~~~~~~~g~id~l   76 (236)
T 1ooe_A            4 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQADSNILVDGNKNWTE---QEQSI--LEQTASSLQGSQVDGV   76 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSSEEEECCTTSCHHH---HHHHH--HHHHHHHHTTCCEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCccccccccEEEeCCCCCHH---HHHHH--HHHHHHHhCCCCCCEE
Confidence            4799999999999999999999997  9999998762110      11222111   00000  00111222  479999


Q ss_pred             EEcCCCCCCC----CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          119 IIPAGVPRKP----GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       119 Ii~ag~~~~~----g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                      |.+||.....    ..+   ....+..|+.....+.+.+.++- ..+.|+++|.
T Consensus        77 v~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  130 (236)
T 1ooe_A           77 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGA  130 (236)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECc
Confidence            9999964321    111   23456678777777777766553 2356666654

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.58  E-value=5e-05  Score=69.20  Aligned_cols=110  Identities=12%  Similarity=0.140  Sum_probs=70.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHh-CCCCEEEEcCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVIIPAGV  124 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi~ag~  124 (305)
                      +|||+|||+ |.+|..++..|...|.  +|.++|+++. +  .++.............   +..+++ +++|+||++.- 
T Consensus         2 ~mkI~iiGa-Ga~G~~~a~~L~~~g~--~V~~~~r~~~-~--~~~~~~~g~~~~~~~~---~~~~~~~~~~D~vilavk-   71 (294)
T 3g17_A            2 SLSVAIIGP-GAVGTTIAYELQQSLP--HTTLIGRHAK-T--ITYYTVPHAPAQDIVV---KGYEDVTNTFDVIIIAVK-   71 (294)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHHCT--TCEEEESSCE-E--EEEESSTTSCCEEEEE---EEGGGCCSCEEEEEECSC-
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeccC-c--EEEEecCCeeccceec---CchHhcCCCCCEEEEeCC-
Confidence            479999999 9999999999998887  8999998751 1  1111111011112111   223555 89999999852 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                         +.            -+.++++.++.+- ++.+|+.+.|-++...           .+|.++|++-
T Consensus        72 ---~~------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~-----------~~~~~~v~~g  113 (294)
T 3g17_A           72 ---TH------------QLDAVIPHLTYLAHEDTLIILAQNGYGQLE-----------HIPFKNVCQA  113 (294)
T ss_dssp             ---GG------------GHHHHGGGHHHHEEEEEEEEECCSSCCCGG-----------GCCCSCEEEC
T ss_pred             ---cc------------CHHHHHHHHHHhhCCCCEEEEeccCcccHh-----------hCCCCcEEEE
Confidence               11            1334455555554 6778888899998752           1777888753

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.58  E-value=0.00011  Score=65.17  Aligned_cols=119  Identities=19%  Similarity=0.202  Sum_probs=72.8

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--CchhhhhhhcccCCceEEEEec-CCC---HHHHhC-
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-  113 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~-~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~-  113 (305)
                      ++.+.++|.|+||+|.+|..++..|+..|.  +|+++|. +.  ......++...  ..++..+.. -+|   ++++++ 
T Consensus        17 ~~~~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~   92 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKPSEVVALFDK   92 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHH
Confidence            444556899999999999999999999998  8999998 33  11222233321  122222211 122   233333 


Q ss_pred             ------CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          114 ------GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       114 ------~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                            +.|+||.+||......   .+   ..+.+..|+.....+.+.+.+.. ..+.|+++|.
T Consensus        93 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  156 (274)
T 1ja9_A           93 AVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS  156 (274)
T ss_dssp             HHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             HHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcC
Confidence                  8999999998653211   11   23456778877777777776653 1255666553

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.58  E-value=0.0003  Score=61.99  Aligned_cols=118  Identities=14%  Similarity=0.125  Sum_probs=67.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhcccCCceEEEEec-CCC---HHHHh-----
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-----  112 (305)
                      .+.++|.|+||+|.+|..++..|+..|.  +|+++|++...  ....++.... ..++..+.. -+|   +++++     
T Consensus        12 ~~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~   88 (265)
T 1h5q_A           12 FVNKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDA   88 (265)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHHH
Confidence            3446899999999999999999999997  99999986521  1122232111 122332211 122   22222     


Q ss_pred             --CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecC
Q 021932          113 --TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISN  164 (305)
Q Consensus       113 --~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~----I~~~~p~aiviv~tN  164 (305)
                        ...|++|.+||......   .+   ....+..|+.....+.+.    +.+....+.|+++|.
T Consensus        89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  152 (265)
T 1h5q_A           89 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  152 (265)
T ss_dssp             HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence              35899999998653211   11   223456666544444444    444443455666653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.57  E-value=0.00025  Score=59.60  Aligned_cols=137  Identities=13%  Similarity=0.078  Sum_probs=77.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCC---HHHH--hCCCCE
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA--LTGMDI  117 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~~a--l~~aDi  117 (305)
                      ...+||.|+|+ |.+|..++..|... |+  +|+++|.++...  ..+.... ...+.+  ..++   ++++  ++++|+
T Consensus        37 ~~~~~v~IiG~-G~~G~~~a~~L~~~~g~--~V~vid~~~~~~--~~~~~~g-~~~~~g--d~~~~~~l~~~~~~~~ad~  108 (183)
T 3c85_A           37 PGHAQVLILGM-GRIGTGAYDELRARYGK--ISLGIEIREEAA--QQHRSEG-RNVISG--DATDPDFWERILDTGHVKL  108 (183)
T ss_dssp             CTTCSEEEECC-SHHHHHHHHHHHHHHCS--CEEEEESCHHHH--HHHHHTT-CCEEEC--CTTCHHHHHTBCSCCCCCE
T ss_pred             CCCCcEEEECC-CHHHHHHHHHHHhccCC--eEEEEECCHHHH--HHHHHCC-CCEEEc--CCCCHHHHHhccCCCCCCE
Confidence            34568999998 99999999999988 88  899999876211  1122211 111111  1112   3343  678999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhH
Q 021932          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVV  197 (305)
Q Consensus       118 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~  197 (305)
                      ||++.+..           ..|    ..++..+++.+|+..++..+|-.+.     .+.+.+. |  .+.++.-...-..
T Consensus       109 vi~~~~~~-----------~~~----~~~~~~~~~~~~~~~ii~~~~~~~~-----~~~l~~~-G--~~~vi~p~~~~a~  165 (183)
T 3c85_A          109 VLLAMPHH-----------QGN----QTALEQLQRRNYKGQIAAIAEYPDQ-----LEGLLES-G--VDAAFNIYSEAGS  165 (183)
T ss_dssp             EEECCSSH-----------HHH----HHHHHHHHHTTCCSEEEEEESSHHH-----HHHHHHH-T--CSEEEEHHHHHHH
T ss_pred             EEEeCCCh-----------HHH----HHHHHHHHHHCCCCEEEEEECCHHH-----HHHHHHc-C--CCEEEchHHHHHH
Confidence            99986421           123    3344566667788777666543221     1233333 3  3456554333334


Q ss_pred             HHHHHHHHHhCCCC
Q 021932          198 RANTFVAEVLGLDP  211 (305)
Q Consensus       198 R~~~~la~~l~v~~  211 (305)
                      ++...+.+.++.+.
T Consensus       166 ~l~~~~~~~~~~~~  179 (183)
T 3c85_A          166 GFARHVCKQLEPQF  179 (183)
T ss_dssp             HHHHHHHHHHCCCC
T ss_pred             HHHHHHHHhcCCcc
Confidence            44455555555443

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.57  E-value=0.00016  Score=57.53  Aligned_cols=100  Identities=12%  Similarity=0.079  Sum_probs=59.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCC---HHHH-hCCCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~~a-l~~aDiVIi~  121 (305)
                      ++||.|+|+ |.+|..++..|...|.  +++++|.++..  ...+....  .... ....++   ++++ ++++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~--~v~~~d~~~~~--~~~~~~~~--~~~~-~~d~~~~~~l~~~~~~~~d~vi~~   77 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEEK--VNAYASYA--THAV-IANATEENELLSLGIRNFEYVIVA   77 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHHH--HHTTTTTC--SEEE-ECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhC--CEEE-EeCCCCHHHHHhcCCCCCCEEEEC
Confidence            347999998 9999999999999887  89999986511  11122111  1111 111122   2222 6789999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                      ++.+          ...|..    ++..+++.+|+.++...+||..
T Consensus        78 ~~~~----------~~~~~~----~~~~~~~~~~~~ii~~~~~~~~  109 (144)
T 2hmt_A           78 IGAN----------IQASTL----TTLLLKELDIPNIWVKAQNYYH  109 (144)
T ss_dssp             CCSC----------HHHHHH----HHHHHHHTTCSEEEEECCSHHH
T ss_pred             CCCc----------hHHHHH----HHHHHHHcCCCeEEEEeCCHHH
Confidence            7532          122322    3444556677755555566653

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.57  E-value=0.00037  Score=61.81  Aligned_cols=118  Identities=19%  Similarity=0.149  Sum_probs=69.7

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHh---
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL---  112 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al---  112 (305)
                      .+.+.+++.|+||+|.+|..++..|++.|.  +|+++|+++  +.....++...  ..++..+.. -+|   .++.+   
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~   83 (256)
T 3gaf_A            8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQA--GGKAIGLECNVTDEQHREAVIKAA   83 (256)
T ss_dssp             TCCTTCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHH
Confidence            344456899999999999999999999998  899999876  22222333332  122332211 122   22222   


Q ss_pred             ----CCCCEEEEcCCCCCCC--CCc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecC
Q 021932          113 ----TGMDIVIIPAGVPRKP--GMT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ----~~aDiVIi~ag~~~~~--g~~---r~d~~~~N~~i~~~i~~~----I~~~~p~aiviv~tN  164 (305)
                          ...|++|.+||.....  ..+   ....+..|+.....+.+.    +.+. ..+.|+++|.
T Consensus        84 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS  147 (256)
T 3gaf_A           84 LDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA-GGGAILNISS  147 (256)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             HHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence                3789999999975321  122   223455665544444444    4443 3466666654

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.57  E-value=0.00041  Score=63.52  Aligned_cols=66  Identities=21%  Similarity=0.306  Sum_probs=45.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ..||++||- |.+|..+|..|+..|+  +|+.||+++.+.  .++....    .+.   ..++.++++++|+||++..
T Consensus         5 s~kIgfIGL-G~MG~~mA~~L~~~G~--~V~v~dr~~~~~--~~l~~~G----~~~---~~s~~e~~~~~dvvi~~l~   70 (297)
T 4gbj_A            5 SEKIAFLGL-GNLGTPIAEILLEAGY--ELVVWNRTASKA--EPLTKLG----ATV---VENAIDAITPGGIVFSVLA   70 (297)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEC---------CTTTTTT----CEE---CSSGGGGCCTTCEEEECCS
T ss_pred             CCcEEEEec-HHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHcC----CeE---eCCHHHHHhcCCceeeecc
Confidence            358999998 9999999999999999  999999976221  2222221    121   2356788999999999853

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.57  E-value=7.7e-05  Score=64.93  Aligned_cols=93  Identities=17%  Similarity=0.180  Sum_probs=61.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      ++||+|||+ |.+|..++..|...|+  +|.++|+++..  ..++...    .++..    +++++++++|+||++....
T Consensus        28 ~~~I~iiG~-G~~G~~la~~l~~~g~--~V~~~~r~~~~--~~~~~~~----g~~~~----~~~~~~~~~DvVi~av~~~   94 (215)
T 2vns_A           28 APKVGILGS-GDFARSLATRLVGSGF--KVVVGSRNPKR--TARLFPS----AAQVT----FQEEAVSSPEVIFVAVFRE   94 (215)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSHHH--HHHHSBT----TSEEE----EHHHHTTSCSEEEECSCGG
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHc----CCcee----cHHHHHhCCCEEEECCChH
Confidence            468999997 9999999999999887  89999986521  1222221    12221    4568899999999987421


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~  168 (305)
                          . ..+.+        +    +....++.+++.++|+...
T Consensus        95 ----~-~~~v~--------~----l~~~~~~~~vv~~s~g~~~  120 (215)
T 2vns_A           95 ----H-YSSLC--------S----LSDQLAGKILVDVSNPTEQ  120 (215)
T ss_dssp             ----G-SGGGG--------G----GHHHHTTCEEEECCCCCHH
T ss_pred             ----H-HHHHH--------H----HHHhcCCCEEEEeCCCccc
Confidence                1 11111        1    2222367889989998753

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.57  E-value=0.002  Score=58.22  Aligned_cols=119  Identities=12%  Similarity=0.129  Sum_probs=73.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh----
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL----  112 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al----  112 (305)
                      +.+.+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.... ..++..+.. -+|   .++.+    
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~  120 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKE-GVKCVLLPGDLSDEQHCKDIVQETV  120 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT-TCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHH
Confidence            33456899999999999999999999998  8999998762  11112221111 123332211 122   22222    


Q ss_pred             ---CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          113 ---TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       113 ---~~aDiVIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                         ...|++|.+||.....+    .+   ....+..|+.....+.+.+.++- ..+.|++++.
T Consensus       121 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          121 RQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             HHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence               37899999998643221    12   24467778888888888877654 3456666653

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.57  E-value=0.0004  Score=62.66  Aligned_cols=118  Identities=14%  Similarity=0.093  Sum_probs=68.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHhC----
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT----  113 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~----  113 (305)
                      .+.++|.|+||+|.+|..++..|++.|.  +|+++|++..  .....++.... ..++..+.. -+|   .+++++    
T Consensus        24 l~~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~  100 (302)
T 1w6u_A           24 FQGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIK  100 (302)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            3446899999999999999999999998  8999998752  22222332210 122332211 122   222233    


Q ss_pred             ---CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecC
Q 021932          114 ---GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN  164 (305)
Q Consensus       114 ---~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I----~~~~p~aiviv~tN  164 (305)
                         ..|++|.+||.....   ..+   ....+..|+.....+.+.+    .+....+.++++|.
T Consensus       101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  164 (302)
T 1w6u_A          101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT  164 (302)
T ss_dssp             HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence               459999999864321   111   2345566766555554444    32334466666654

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.57  E-value=0.00044  Score=67.44  Aligned_cols=98  Identities=11%  Similarity=0.117  Sum_probs=64.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCC---CCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTG---MDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~---aDiVIi~a  122 (305)
                      ++||+|||+ |.+|..++..|+..|+  +|.++|+++.+  +.++........+..   ++++++.+++   +|+||++.
T Consensus         5 ~~~IgvIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVilav   76 (474)
T 2iz1_A            5 QANFGVVGM-AVMGKNLALNVESRGY--TVAIYNRTTSK--TEEVFKEHQDKNLVF---TKTLEEFVGSLEKPRRIMLMV   76 (474)
T ss_dssp             TBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHTTTSCEEE---CSSHHHHHHTBCSSCEEEECC
T ss_pred             CCcEEEEee-HHHHHHHHHHHHhCCC--EEEEEcCCHHH--HHHHHHhCcCCCeEE---eCCHHHHHhhccCCCEEEEEc
Confidence            368999998 9999999999999998  89999986521  111221100112332   3467777666   99999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPV  166 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPv  166 (305)
                      ..+               ..++++++.+.... |+.+|+..+|-.
T Consensus        77 p~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~  106 (474)
T 2iz1_A           77 QAG---------------AATDATIKSLLPLLDIGDILIDGGNTH  106 (474)
T ss_dssp             CTT---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             cCc---------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            321               12445556666655 567777777764

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.56  E-value=0.00035  Score=61.85  Aligned_cols=113  Identities=14%  Similarity=0.078  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHHh------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al------  112 (305)
                      +.+++.|+||+|.+|..++..|++.|.  +|+++|+++.  .....++.     ..+..+. .-+|   .++.+      
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKPPAGEEPAAELG-----AAVRFRNADVTNEADATAALAFAKQE   78 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  8999998762  11112221     1111111 1112   22233      


Q ss_pred             -CCCCEEEEcCCCCCCCC-------C---chhhHHHhhHHHHHHHHHHHHHh---------CCCcEEEEecC
Q 021932          113 -TGMDIVIIPAGVPRKPG-------M---TRDDLFNINAGIVKTLCEGIAKC---------CPKAIVNLISN  164 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~g-------~---~r~d~~~~N~~i~~~i~~~I~~~---------~p~aiviv~tN  164 (305)
                       ...|++|.+||......       .   +....+..|+.....+.+.+.+.         ...+.|+++|.
T Consensus        79 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS  150 (257)
T 3tpc_A           79 FGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTAS  150 (257)
T ss_dssp             HSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEec
Confidence             38999999999753211       1   12334566765555554444433         23466666654

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.56  E-value=0.0004  Score=60.43  Aligned_cols=116  Identities=17%  Similarity=0.127  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC--CCHHHHhC---CCCEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ--QQLEDALT---GMDIVI  119 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t--~d~~~al~---~aDiVI  119 (305)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|++.....  ++........+....-+  .+++++++   ..|+||
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi   81 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLV--SLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEE
Confidence            346899999999999999999999998  8999998652111  11110001111111101  12334444   479999


Q ss_pred             EcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecC
Q 021932          120 IPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISN  164 (305)
Q Consensus       120 i~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~----I~~~~p~aiviv~tN  164 (305)
                      .+||......   .+   ....+..|+.....+.+.    +.+....+.|+++|.
T Consensus        82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS  136 (244)
T 1cyd_A           82 NNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS  136 (244)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             ECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcc
Confidence            9998643211   11   233556676664444444    444443455666654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.56  E-value=0.00017  Score=63.23  Aligned_cols=116  Identities=17%  Similarity=0.180  Sum_probs=67.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-----
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-----  112 (305)
                      .+.+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...  ..++..+.. -+|   .++.+     
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEK--GFKARGLVLNISDIESIQNFFAEIKA   78 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999998  9999998762  2222233322  122332211 122   22222     


Q ss_pred             --CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHH----HHHHHHHhCCCcEEEEecC
Q 021932          113 --TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 --~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~----i~~~I~~~~p~aiviv~tN  164 (305)
                        ...|++|.+||......   .+   ....+..|+.....    +.+.+.+.. .+.|++++.
T Consensus        79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS  141 (247)
T 3lyl_A           79 ENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKR-WGRIISIGS  141 (247)
T ss_dssp             TTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcc
Confidence              25799999999753221   11   23345566554444    444444443 456666654

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.56  E-value=0.00029  Score=61.82  Aligned_cols=117  Identities=15%  Similarity=0.147  Sum_probs=66.8

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHHh---
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL---  112 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al---  112 (305)
                      ...+.++|.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++..     .+.... .-++   .++.+   
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~   82 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKD-----NYTIEVCNLANKEECSNLISKT   82 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCS-----SEEEEECCTTSHHHHHHHHHTC
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhcc-----CccEEEcCCCCHHHHHHHHHhc
Confidence            445567999999999999999999999998  8999998752  111222221     122111 1112   22223   


Q ss_pred             CCCCEEEEcCCCCCCC------CCchhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecCCC
Q 021932          113 TGMDIVIIPAGVPRKP------GMTRDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISNPV  166 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~------g~~r~d~~~~N~~i~~----~i~~~I~~~~p~aiviv~tNPv  166 (305)
                      .+.|++|.+||.....      .++....+..|+....    .+.+.+.+. ..+.|+++|...
T Consensus        83 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~  145 (249)
T 3f9i_A           83 SNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK-RYGRIINISSIV  145 (249)
T ss_dssp             SCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCCC
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEccHH
Confidence            3789999999864311      1223445666655444    444444443 345666666443

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.56  E-value=0.00066  Score=60.58  Aligned_cols=136  Identities=16%  Similarity=0.133  Sum_probs=68.9

Q ss_pred             hCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccC
Q 021932           19 LHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDT   95 (305)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~   95 (305)
                      -|.+++-++-+.-+|.+.    .++.+.++|.|+||+|.+|..++..|+..|.  +|++++++..   .....++...  
T Consensus         6 ~~~~~~~~~~~~~~~~~~----~m~l~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--   77 (271)
T 4iin_A            6 HHSSGVDLGTENLYFQSN----AMQFTGKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEK--   77 (271)
T ss_dssp             ----------------------CCCCSCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--
T ss_pred             ccccccccCcceehhhhh----hcccCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhc--
Confidence            345556665555333322    2444556899999999999999999999998  8999998541   1122223222  


Q ss_pred             CceEEEEec-CCC---HHHHh-------CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhC
Q 021932           96 NAVVRGFLG-QQQ---LEDAL-------TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCC  154 (305)
Q Consensus        96 ~~~v~~~~~-t~d---~~~al-------~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~  154 (305)
                      ..++..+.. -+|   .++.+       ...|++|.+||......   .+   ..+.+..|+.    +.+.+.+.+.+..
T Consensus        78 ~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~  157 (271)
T 4iin_A           78 GYKAAVIKFDAASESDFIEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR  157 (271)
T ss_dssp             TCCEEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC
Confidence            122332211 112   22222       37999999999754321   11   2334555654    4455555555544


Q ss_pred             CCcEEEEec
Q 021932          155 PKAIVNLIS  163 (305)
Q Consensus       155 p~aiviv~t  163 (305)
                      . +.|+++|
T Consensus       158 ~-g~iv~is  165 (271)
T 4iin_A          158 F-GSVVNVA  165 (271)
T ss_dssp             C-EEEEEEC
T ss_pred             C-CEEEEEe
Confidence            3 4555554

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.55  E-value=0.00013  Score=63.50  Aligned_cols=111  Identities=14%  Similarity=0.134  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHH-------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a-------  111 (305)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++.      .+..+. .-+|   ++++       
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~   75 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELE------GALPLPGDVREEGDWARAVAAMEEA   75 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhh------hceEEEecCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999998  8999998652  11111121      111111 1112   2222       


Q ss_pred             hCCCCEEEEcCCCCCCCC---C---chhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          112 LTGMDIVIIPAGVPRKPG---M---TRDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~g---~---~r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +.+.|++|.++|......   .   +..+.+..|+...    +.+.+.+.+.. .+.|+++|.
T Consensus        76 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~~~iv~isS  137 (234)
T 2ehd_A           76 FGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRG-GGTIVNVGS  137 (234)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CcEEEEECC
Confidence            247899999998643211   1   1234556666544    45555555433 455666654

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.55  E-value=0.0007  Score=60.88  Aligned_cols=117  Identities=15%  Similarity=0.191  Sum_probs=70.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---HHHHhC----
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDALT----  113 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al~----  113 (305)
                      .+.+++.|+||+|.+|..++..|++.|.  +|++.|+++  +.....++....  .++..+. .-+|   .++.++    
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~  105 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTG  105 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3446899999999999999999999998  899999976  222233343321  1222111 1112   223333    


Q ss_pred             ---CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          114 ---GMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ---~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                         ..|++|.+||......   .+   ....+..|+.    +.+.+.+.+.+....+.|++++.
T Consensus       106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS  169 (276)
T 3r1i_A          106 ELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTAS  169 (276)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECc
Confidence               7999999999753221   11   2233455654    44555555655554466666653

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.55  E-value=0.00015  Score=68.03  Aligned_cols=89  Identities=16%  Similarity=0.211  Sum_probs=58.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHHHhC----CCCEEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALT----GMDIVII  120 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~al~----~aDiVIi  120 (305)
                      .+||+|||. |.+|.+++..|...|+  +|+++|+++. ...+.++   .    +..   ..+++++++    ++|+||+
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~~a~~~---G----~~~---~~~~~e~~~~a~~~aDlVil   74 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHAANH--SVFGYNRSRSGAKSAVDE---G----FDV---SADLEATLQRAAAEDALIVL   74 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHT---T----CCE---ESCHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHc---C----Cee---eCCHHHHHHhcccCCCEEEE
Confidence            468999998 9999999999999997  9999998752 1112211   1    111   134555554    5799999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +..                ...+.++++.+....|+++|+.++
T Consensus        75 avP----------------~~~~~~vl~~l~~~~~~~iv~Dv~  101 (341)
T 3ktd_A           75 AVP----------------MTAIDSLLDAVHTHAPNNGFTDVV  101 (341)
T ss_dssp             CSC----------------HHHHHHHHHHHHHHCTTCCEEECC
T ss_pred             eCC----------------HHHHHHHHHHHHccCCCCEEEEcC
Confidence            862                123445555666666777766554

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.55  E-value=0.0005  Score=61.28  Aligned_cols=117  Identities=15%  Similarity=0.201  Sum_probs=69.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCCH---H---HHhCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---E---DALTGM  115 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d~---~---~al~~a  115 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++........+..+.. -++.   +   +.+...
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i   86 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV   86 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence            345899999999999999999999998  999999876  2222333332211223332211 1221   1   223478


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       116 DiVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      |++|.+||......   .+   ..+.+..|+..    .+.+.+.+.+.. .+.|++++.
T Consensus        87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS  144 (267)
T 3t4x_A           87 DILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERK-EGRVIFIAS  144 (267)
T ss_dssp             SEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-EEEEEEECC
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCEEEEEcc
Confidence            99999999753221   11   22345666655    555556555443 455666653

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.55  E-value=0.00035  Score=61.83  Aligned_cols=116  Identities=17%  Similarity=0.090  Sum_probs=67.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-----
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-----  112 (305)
                      .+.++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...  ..++..+.. -+|   .++++     
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   87 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKK--GFQVTGSVCDASLRPEREKLMQTVSS   87 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCeeEEEECCCCCHHHHHHHHHHHHH
Confidence            3446899999999999999999999998  8999998752  2222233221  122332211 122   22222     


Q ss_pred             ---CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecC
Q 021932          113 ---TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN  164 (305)
Q Consensus       113 ---~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I----~~~~p~aiviv~tN  164 (305)
                         .+.|+||.+||.....   ..+   ..+.+..|+.....+.+.+    .+... +.|+++|.
T Consensus        88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~isS  151 (266)
T 1xq1_A           88 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGC-GNIIFMSS  151 (266)
T ss_dssp             HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CEEEEEC-
T ss_pred             HhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcc
Confidence               5789999999864321   111   2345666776555555554    44443 45555554

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.55  E-value=0.00067  Score=61.74  Aligned_cols=116  Identities=18%  Similarity=0.179  Sum_probs=70.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHh------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al------  112 (305)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.|+++  +.....++....  .++..+.. -+|   .++.+      
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRL  105 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            445899999999999999999999998  899999976  222233343321  22222211 122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                       ...|++|.+||......   .+   ....+..|+.    +.+.+.+.+.+....+.|+++|.
T Consensus       106 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS  168 (301)
T 3tjr_A          106 LGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTAS  168 (301)
T ss_dssp             HSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCc
Confidence             37899999999753211   11   2334555654    44455555666655677777764

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.55  E-value=0.00033  Score=64.34  Aligned_cols=67  Identities=22%  Similarity=0.388  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .++||++||- |.+|+.+|..|+..|+  +|..||+++.  .+.++....    .+.   ..++.++.+++|+||.+..
T Consensus         2 ~M~kIgfIGl-G~MG~~mA~~L~~~G~--~v~v~dr~~~--~~~~l~~~G----a~~---a~s~~e~~~~~dvv~~~l~   68 (300)
T 3obb_A            2 HMKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQS--AVDGLVAAG----ASA---ARSARDAVQGADVVISMLP   68 (300)
T ss_dssp             -CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHHTT----CEE---CSSHHHHHTTCSEEEECCS
T ss_pred             CcCEEEEeee-hHHHHHHHHHHHhCCC--eEEEEcCCHH--HHHHHHHcC----CEE---cCCHHHHHhcCCceeecCC
Confidence            4569999998 9999999999999999  9999998652  223333322    111   2357889999999999853

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.55  E-value=0.00014  Score=65.04  Aligned_cols=117  Identities=14%  Similarity=0.187  Sum_probs=69.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch--hhhhhhcccCCceEEEEec-CCC---HHHHhC---
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLG-QQQ---LEDALT---  113 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g--~~~DL~~~~~~~~v~~~~~-t~d---~~~al~---  113 (305)
                      +.+.++|.|+||+|.+|..++..|+..|.  +|+++|++....  ....+...  ..++..+.. -+|   .+++++   
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~  106 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTY--GVHSKAYKCNISDPKSVEETISQQE  106 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHH--CSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeecCCHHHHHHHHHHHH
Confidence            34456899999999999999999999998  899999876221  11122211  112222211 112   223333   


Q ss_pred             ----CCCEEEEcCCCCCC--C---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          114 ----GMDIVIIPAGVPRK--P---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ----~aDiVIi~ag~~~~--~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                          ..|+||.+||....  +   ..+   ....+..|+..    .+.+.+.+.+... +.|+++|.
T Consensus       107 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~~iv~isS  172 (279)
T 3ctm_A          107 KDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGK-GSLIITSS  172 (279)
T ss_dssp             HHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred             HHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEECc
Confidence                48999999986532  1   111   12345556655    6677777776654 44555543

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.54  E-value=0.00047  Score=67.36  Aligned_cols=98  Identities=17%  Similarity=0.167  Sum_probs=63.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhc-ccCCceEEEEecCCCHHHHh---CCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTNAVVRGFLGQQQLEDAL---TGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~-~~~~~~v~~~~~t~d~~~al---~~aDiVIi~a  122 (305)
                      +||+|||+ |.+|..++..|+..|+  +|.++|+++.+.  .++.. ......+..   ++++++++   +++|+||++.
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~--~~l~~~~~~g~gi~~---~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKV--DDFLANEAKGTKVLG---AHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHH--HHHHHTTTTTSSCEE---CSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHhccccCCCeEE---eCCHHHHHhhccCCCEEEEeC
Confidence            58999998 9999999999999998  899999876211  12221 000012332   34666665   5999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd  167 (305)
                      ..+               ..++++++.+.... |+.+|+..+|-..
T Consensus        75 p~~---------------~~v~~vl~~l~~~l~~g~iII~~s~~~~  105 (482)
T 2pgd_A           75 KAG---------------QAVDNFIEKLVPLLDIGDIIIDGGNSEY  105 (482)
T ss_dssp             CTT---------------HHHHHHHHHHHHHCCTTCEEEECSCCCH
T ss_pred             CCh---------------HHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence            321               12344445565554 5677777777654

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.54  E-value=0.00051  Score=61.63  Aligned_cols=116  Identities=16%  Similarity=0.155  Sum_probs=69.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al------  112 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++....  .++..+.. -+|   .++++      
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   96 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVER   96 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  8999998752  22222332211  12222211 112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh-----CCCcEEEEecC
Q 021932          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC-----CPKAIVNLISN  164 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~-----~p~aiviv~tN  164 (305)
                       .+.|++|.+||......   .+   ..+.+..|+.....+.+.+.+.     ...+.|+++|.
T Consensus        97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS  160 (277)
T 2rhc_B           97 YGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAS  160 (277)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECC
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECc
Confidence             37899999999753211   11   2345667777666666665433     12355666654

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.54  E-value=0.00023  Score=63.40  Aligned_cols=111  Identities=17%  Similarity=0.253  Sum_probs=67.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CC---CHHHHhC------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQ---QLEDALT------  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~---d~~~al~------  113 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++..     .+..+.. -+   +.+++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   79 (260)
T 1nff_A            7 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPAQWKAAVDTAVTAF   79 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhc-----CceEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  9999998752  111122221     1221111 11   2233343      


Q ss_pred             -CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          114 -GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 -~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                       +.|++|.+||.....   ..+   ..+.+..|+...    +.+.+.+.+.. .+.|+++|.
T Consensus        80 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (260)
T 1nff_A           80 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISS  140 (260)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEee
Confidence             899999999965321   112   233556666554    56666666554 355555553

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.53  E-value=0.00044  Score=61.85  Aligned_cols=127  Identities=14%  Similarity=0.103  Sum_probs=68.3

Q ss_pred             ccccccCCC--CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC
Q 021932           33 LGRMDCRAK--GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ  107 (305)
Q Consensus        33 ~~~~~~~~~--~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d  107 (305)
                      |..++|...  ++.+.+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...  ...+..+.. -+|
T Consensus         6 ~~~~~~~~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~   81 (273)
T 1ae1_A            6 VSMMNCNNEGRWSLKGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLS   81 (273)
T ss_dssp             ----------CCCCTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTC
T ss_pred             cccccccccccCCCCCCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCC
Confidence            444444432  334456899999999999999999999998  8999998752  2222233221  122222211 112


Q ss_pred             ---HHHHh--------CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHH----HHHHHHHhCCCcEEEEecC
Q 021932          108 ---LEDAL--------TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       108 ---~~~al--------~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~----i~~~I~~~~p~aiviv~tN  164 (305)
                         .++++        ...|++|.+||.....   ..+   ....+..|+.....    +.+.+.+.. .+.|+++|.
T Consensus        82 ~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS  158 (273)
T 1ae1_A           82 RTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSS  158 (273)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECC
T ss_pred             HHHHHHHHHHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence               22222        5789999999974321   112   22344556554444    444444443 355666654

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.53  E-value=0.00053  Score=59.50  Aligned_cols=75  Identities=21%  Similarity=0.160  Sum_probs=49.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCCchh-hhhhhcccCCceEEEEec-CCC---HHHHhC-----
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGV-TADISHMDTNAVVRGFLG-QQQ---LEDALT-----  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~--~~~el~L~D~~~~~g~-~~DL~~~~~~~~v~~~~~-t~d---~~~al~-----  113 (305)
                      .++|.|+||+|.+|..++..|+..|  .  +|+++|++..... ..++   . ..++..+.. -+|   .++.++     
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~--~V~~~~r~~~~~~~l~~~---~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR--HIIATARDVEKATELKSI---K-DSRVHVLPLTVTCDKSLDTFVSKVGEI   76 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC--EEEEEESSGGGCHHHHTC---C-CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc--EEEEEecCHHHHHHHHhc---c-CCceEEEEeecCCHHHHHHHHHHHHHh
Confidence            3589999999999999999999998  6  9999998752211 1222   1 122332211 122   223333     


Q ss_pred             ----CCCEEEEcCCCCC
Q 021932          114 ----GMDIVIIPAGVPR  126 (305)
Q Consensus       114 ----~aDiVIi~ag~~~  126 (305)
                          +.|++|.+||...
T Consensus        77 ~g~~~id~li~~Ag~~~   93 (250)
T 1yo6_A           77 VGSDGLSLLINNAGVLL   93 (250)
T ss_dssp             HGGGCCCEEEECCCCCC
T ss_pred             cCCCCCcEEEECCcccC
Confidence                8999999998654

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.52  E-value=0.00045  Score=61.07  Aligned_cols=114  Identities=20%  Similarity=0.286  Sum_probs=67.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHHhC-------
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDALT-------  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al~-------  113 (305)
                      +++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++....  .++..+. .-+|   .+++++       
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999998  8999998752  22222333211  1222221 1122   223333       


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..|++|.+||......   .+   ....+..|+.    +.+.+.+.+.+..+.+.|+++|.
T Consensus        79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  139 (256)
T 1geg_A           79 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS  139 (256)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence            7999999998643211   11   2234555654    44555666655543456666653

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.52  E-value=0.00053  Score=63.08  Aligned_cols=117  Identities=19%  Similarity=0.121  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------  112 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++..  .....++........+..+.. -+|   +++++       
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            45899999999999999999999998  8999999762  222223332211113332211 122   22233       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHh-----CCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKC-----CPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~-----~p~aiviv~tN  164 (305)
                      ...|++|.+||......   .+   ..+.+..|+..    ++.+.+.+.+.     ...+.|+++|.
T Consensus        86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS  152 (319)
T 3ioy_A           86 GPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTAS  152 (319)
T ss_dssp             CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecc
Confidence            36699999999643211   11   23355566544    44444555443     13556666653

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.52  E-value=0.00028  Score=62.00  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=67.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CCC--chhhhhhhcccCCceEEEEe-cCCC---HHHHh------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~-~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al------  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+ ++.  .....++...  ..++..+. .-+|   .++.+      
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKL--GSDAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999998  8999998 431  2222233221  12222221 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                       .+.|++|.+||......   .+   ....+..|+..    .+.+.+.+.+... +.|+++|.
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS  141 (246)
T 2uvd_A           80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRH-GRIVNIAS  141 (246)
T ss_dssp             HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECC
Confidence             37999999999753211   11   23345666655    5566666655543 55555553

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.52  E-value=0.00043  Score=61.51  Aligned_cols=113  Identities=21%  Similarity=0.235  Sum_probs=66.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch-----hhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g-----~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|+++...     ...|+.+...   ++..  -....+.+...|++|.
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~Dl~d~~~---v~~~--~~~~~~~~g~iD~lv~   93 (253)
T 2nm0_A           21 SRSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSGEPPEGFLAVKCDITDTEQ---VEQA--YKEIEETHGPVEVLIA   93 (253)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTSHHH---HHHH--HHHHHHHTCSCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHhhccceEEEecCCCHHH---HHHH--HHHHHHHcCCCCEEEE
Confidence            35899999999999999999999998  899999875211     1112222110   0000  0011223346799999


Q ss_pred             cCCCCCCC------CCchhhHHHhhHHHHHHHHH----HHHHhCCCcEEEEecCCC
Q 021932          121 PAGVPRKP------GMTRDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISNPV  166 (305)
Q Consensus       121 ~ag~~~~~------g~~r~d~~~~N~~i~~~i~~----~I~~~~p~aiviv~tNPv  166 (305)
                      +||.....      .++..+.+..|+.....+.+    .+.+.. .+.|+++|.-.
T Consensus        94 nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~  148 (253)
T 2nm0_A           94 NAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAK-KGRVVLISSVV  148 (253)
T ss_dssp             ECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCCC
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECchh
Confidence            99874321      12234556667665544444    444443 45666666543

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.51  E-value=0.00015  Score=63.64  Aligned_cols=112  Identities=14%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh------hhhhhcccCCceEEEEecCCCHHHHh--CCCCE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV------TADISHMDTNAVVRGFLGQQQLEDAL--TGMDI  117 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~------~~DL~~~~~~~~v~~~~~t~d~~~al--~~aDi  117 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++....      ..|+.+..   .+...  -....+.+  .+.|+
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~D~~~~~---~v~~~--~~~~~~~~~~g~iD~   79 (241)
T 1dhr_A            7 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEASASVIVKMTDSFTE---QADQV--TAEVGKLLGDQKVDA   79 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSSEEEECCCCSCHHH---HHHHH--HHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCChhhccCCcEEEEcCCCCHH---HHHHH--HHHHHHHhCCCCCCE
Confidence            35899999999999999999999998  8999998762111      11111110   00000  00111222  47999


Q ss_pred             EEEcCCCCCCC----CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          118 VIIPAGVPRKP----GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       118 VIi~ag~~~~~----g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                      +|.+||.....    ..+   ....+..|+.....+.+.+.+.- ..+.|+++|.
T Consensus        80 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS  134 (241)
T 1dhr_A           80 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGA  134 (241)
T ss_dssp             EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECC
Confidence            99999964321    111   23456667776666666665543 2356666654

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.51  E-value=0.00038  Score=60.38  Aligned_cols=93  Identities=18%  Similarity=0.179  Sum_probs=59.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-c---hhhhhhhcccCCceEEEEecCCCHHHHhC------CCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P---GVTADISHMDTNAVVRGFLGQQQLEDALT------GMD  116 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~---g~~~DL~~~~~~~~v~~~~~t~d~~~al~------~aD  116 (305)
                      ++|.|+||+|.+|..++..|++.|.  +|+++|+++. .   ....|+.+.            .+++++++      +.|
T Consensus         3 k~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~D~~~~------------~~~~~~~~~~~~~~~~d   68 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRREGEDLIYVEGDVTRE------------EDVRRAVARAQEEAPLF   68 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCCSSSSEEEECCTTCH------------HHHHHHHHHHHHHSCEE
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEccCccccceEEEeCCCCCH------------HHHHHHHHHHHhhCCce
Confidence            5899999999999999999999998  9999998653 0   001122211            12223333      789


Q ss_pred             EEEEcCCCCCCCC------C----chhhHHHhhHHHHHHHHHHHHHh
Q 021932          117 IVIIPAGVPRKPG------M----TRDDLFNINAGIVKTLCEGIAKC  153 (305)
Q Consensus       117 iVIi~ag~~~~~g------~----~r~d~~~~N~~i~~~i~~~I~~~  153 (305)
                      ++|.++|......      .    ...+.+..|+.....+.+.+.+.
T Consensus        69 ~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  115 (242)
T 1uay_A           69 AVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWA  115 (242)
T ss_dssp             EEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             EEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999998643221      1    22345666776666666655543

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.51  E-value=0.0013  Score=58.42  Aligned_cols=117  Identities=21%  Similarity=0.280  Sum_probs=68.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHh-----
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-----  112 (305)
                      .+.+++.|+||+|.+|..++..|+..|.  +|++.|+++  +.....++.... ..++..+.. -+|   .++.+     
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAVE   84 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3446899999999999999999999998  999999876  222333444322 123333211 122   22222     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCch---hhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          113 --TGMDIVIIPAGVPRKP---GMTR---DDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 --~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                        ...|++|.+||.....   ..+.   ...+..|+...    +.+.+.+.+... +.|+++|.
T Consensus        85 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~isS  147 (262)
T 3pk0_A           85 EFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGS-GRVVLTSS  147 (262)
T ss_dssp             HHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSS-CEEEEECC
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEec
Confidence              3899999999964321   1122   23455665544    444555544444 44555543

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.51  E-value=0.00096  Score=59.19  Aligned_cols=117  Identities=19%  Similarity=0.135  Sum_probs=68.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCCH---HHH------
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---EDA------  111 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d~---~~a------  111 (305)
                      .+.++|.|+||+|.+|..++..|+..|.  +|+++|++.  +.....++...  ...+..+.. -+|.   ++.      
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~  102 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAA--GGEAESHACDLSHSDAIAAFATGVLA  102 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHHHHH
Confidence            3446899999999999999999999998  899999876  22222333322  123332211 1222   122      


Q ss_pred             -hCCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHH----HHHHHHHhCCCcEEEEecCC
Q 021932          112 -LTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNP  165 (305)
Q Consensus       112 -l~~aDiVIi~ag~~~~~g----~~---r~d~~~~N~~i~~~----i~~~I~~~~p~aiviv~tNP  165 (305)
                       +...|++|.+||.....+    .+   ..+.+..|+.....    +.+.+.+. ..+.|+++|..
T Consensus       103 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~  167 (262)
T 3rkr_A          103 AHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA-KRGHIINISSL  167 (262)
T ss_dssp             HHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCEEEEECSS
T ss_pred             hcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCceEEEEech
Confidence             236899999999732221    11   23345556554444    44444443 34566666543

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.50  E-value=0.00076  Score=59.64  Aligned_cols=111  Identities=18%  Similarity=0.172  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHHhC------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDALT------  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al~------  113 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.     .++..+. .-+|   .+++++      
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (254)
T 1hdc_A            5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELG-----DAARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  8999998752  11112221     1122111 1112   222333      


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          114 -GMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 -~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                       +.|++|.+||......   .+   ....+..|+..    .+.+.+.+++.. .+.|+++|.
T Consensus        78 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  138 (254)
T 1hdc_A           78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISS  138 (254)
T ss_dssp             SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECc
Confidence             8999999999653211   11   23345556543    456666676654 355555553

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.50  E-value=0.00045  Score=61.13  Aligned_cols=113  Identities=19%  Similarity=0.202  Sum_probs=66.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHh-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------  112 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++  +.....++...  ..++..+.. -+|   .++.+       
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGE--GLSVTGTVCHVGKAEDRERLVAMAVNLH   89 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  999999875  22222233321  122222211 112   22223       


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g----~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~t  163 (305)
                      .+.|++|.+||.....+    .+   ..+.+..|+...    +.+.+.+.+.. .+.|+++|
T Consensus        90 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~is  150 (260)
T 2zat_A           90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRG-GGSVLIVS  150 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEe
Confidence            38999999998642111    11   233455665554    44444444443 45555555

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.50  E-value=0.00072  Score=58.74  Aligned_cols=113  Identities=17%  Similarity=0.238  Sum_probs=66.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCC--chhhhhhhcccCCceEEE-Ee-cCCC---HHHH-------
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNT--PGVTADISHMDTNAVVRG-FL-GQQQ---LEDA-------  111 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~-D~~~~--~g~~~DL~~~~~~~~v~~-~~-~t~d---~~~a-------  111 (305)
                      ++|.|+||+|.+|..++..|+..|.  +|+++ ++++.  .....++....  ..+.. +. .-+|   .+++       
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRG--SPLVAVLGANLLEAEAATALVHQAAEV   77 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTT--CSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEeccCCCHHHHHHHHHHHHHh
Confidence            4799999999999999999999997  88887 66542  11122232211  11111 11 1122   2222       


Q ss_pred             hCCCCEEEEcCCCCCCC---CC---chhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          112 LTGMDIVIIPAGVPRKP---GM---TRDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~---g~---~r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +.+.|++|.+||.....   ..   ...+.+..|+..    .+.+.+.+.+.. .+.|+++|.
T Consensus        78 ~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS  139 (245)
T 2ph3_A           78 LGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITS  139 (245)
T ss_dssp             HTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeC
Confidence            34799999999875321   11   123455667665    666666666554 345555553

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.49  E-value=0.00049  Score=61.36  Aligned_cols=116  Identities=16%  Similarity=0.105  Sum_probs=68.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CC--CchhhhhhhcccCCceEEEEec-CCC-------HHHHh--
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTNAVVRGFLG-QQQ-------LEDAL--  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~-~~--~~g~~~DL~~~~~~~~v~~~~~-t~d-------~~~al--  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+ ++  ......++.... ..++..+.. -+|       .++.+  
T Consensus        11 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~   87 (276)
T 1mxh_A           11 CPAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIIDC   87 (276)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHhc-CCceEEEeccCCCccccHHHHHHHHHH
Confidence            35899999999999999999999998  9999998 54  222222332210 112222111 112       22222  


Q ss_pred             -----CCCCEEEEcCCCCCCCC-----------------CchhhHHHhhHHHHHHHHHHHHHhC--CC------cEEEEe
Q 021932          113 -----TGMDIVIIPAGVPRKPG-----------------MTRDDLFNINAGIVKTLCEGIAKCC--PK------AIVNLI  162 (305)
Q Consensus       113 -----~~aDiVIi~ag~~~~~g-----------------~~r~d~~~~N~~i~~~i~~~I~~~~--p~------aiviv~  162 (305)
                           ...|++|.+||......                 ......+..|+.....+.+.+.++-  ..      +.|+++
T Consensus        88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~i  167 (276)
T 1mxh_A           88 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNL  167 (276)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEE
T ss_pred             HHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Confidence                 37899999999643211                 1123456677777666666666542  12      566666


Q ss_pred             cC
Q 021932          163 SN  164 (305)
Q Consensus       163 tN  164 (305)
                      |.
T Consensus       168 sS  169 (276)
T 1mxh_A          168 CD  169 (276)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.49  E-value=0.00072  Score=58.71  Aligned_cols=102  Identities=16%  Similarity=0.133  Sum_probs=59.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHh-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------  112 (305)
                      ++++.|+||+|.+|..++..|+..|.  +|++.|++.  ......++.... ..++..+.. -+|   .++.+       
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERF   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence            34799999999999999999999998  899999875  222233333111 122222211 112   22223       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHH
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI  150 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I  150 (305)
                      ...|++|.+||......   .+   -...+..|+.....+.+.+
T Consensus        79 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~  122 (235)
T 3l77_A           79 GDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAF  122 (235)
T ss_dssp             SSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            37899999999753221   12   2334555655444444443

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.49  E-value=7.7e-05  Score=66.29  Aligned_cols=92  Identities=15%  Similarity=0.184  Sum_probs=59.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~-~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      |||+|||+ |.+|..++..|...| +  +|.++|+++..  ...+....   .+...   .++.+++ ++|+||++.. +
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~~--~v~~~~r~~~~--~~~~~~~~---g~~~~---~~~~~~~-~~D~vi~~v~-~   67 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGGY--RIYIANRGAEK--RERLEKEL---GVETS---ATLPELH-SDDVLILAVK-P   67 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC--EEEEECSSHHH--HHHHHHHT---CCEEE---SSCCCCC-TTSEEEECSC-H
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCC--eEEEECCCHHH--HHHHHHhc---CCEEe---CCHHHHh-cCCEEEEEeC-c
Confidence            58999998 999999999998888 6  99999986521  11222210   12222   2445677 9999999863 1


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~  168 (305)
                                     ..++++++.+.. . +.+|+.++|.+..
T Consensus        68 ---------------~~~~~v~~~l~~-~-~~ivv~~~~g~~~   93 (263)
T 1yqg_A           68 ---------------QDMEAACKNIRT-N-GALVLSVAAGLSV   93 (263)
T ss_dssp             ---------------HHHHHHHTTCCC-T-TCEEEECCTTCCH
T ss_pred             ---------------hhHHHHHHHhcc-C-CCEEEEecCCCCH
Confidence                           123444444443 3 6667666676663

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.49  E-value=0.00046  Score=61.15  Aligned_cols=115  Identities=13%  Similarity=0.109  Sum_probs=66.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.... ..++..+.. -+|   .++++       
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            7 GKVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  8999998752  22222232210 112222211 122   22233       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      .+.|++|.+||.....   ..+   ....+..|+..    .+.+.+.+.+.. .+.|+++|.
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS  144 (263)
T 3ai3_A           84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNAS  144 (263)
T ss_dssp             SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence            3799999999965321   112   22345556544    444455554444 355555553

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.48  E-value=0.00022  Score=63.90  Aligned_cols=112  Identities=24%  Similarity=0.375  Sum_probs=66.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHH-------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-------  111 (305)
                      +.+++.|+||+|.+|..++..|+..|.  .|++.|+++.  .....++.     .++..+.. -+|   .++.       
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLG-----KDVFVFSANLSDRKSIKQLAEVAERE   98 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEeecCCHHHHHHHHHHHHHH
Confidence            445899999999999999999999998  8999998752  11111111     12222111 122   2222       


Q ss_pred             hCCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          112 LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +...|++|.+||.....   ..+   ..+.+..|+..    .+.+.+.+.+.. .+.|+++|.
T Consensus        99 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~Iv~isS  160 (266)
T 3grp_A           99 MEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR-YGRIINITS  160 (266)
T ss_dssp             HTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence            24799999999975321   111   23345667665    666666666554 355666654

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.47  E-value=0.00037  Score=61.88  Aligned_cols=65  Identities=17%  Similarity=0.234  Sum_probs=46.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      |||+|||+ |.+|..++..|...|+  +|.++|.........++....    +.     ++++++++++|+||++..
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~~~~~~g----~~-----~~~~~~~~~aDvvi~~v~   65 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIERARTVG----VT-----ETSEEDVYSCPVVISAVT   65 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHHHHHHT----CE-----ECCHHHHHTSSEEEECSC
T ss_pred             CeEEEEec-hHHHHHHHHHHHHCCC--eEEEeCCccCHHHHHHHHHCC----Cc-----CCHHHHHhcCCEEEEECC
Confidence            58999998 9999999999999998  899988732212222232211    11     234677899999999863

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=97.46  E-value=0.00069  Score=65.40  Aligned_cols=108  Identities=15%  Similarity=0.216  Sum_probs=65.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc----------------CCceEEEEecCCCH
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TNAVVRGFLGQQQL  108 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~----------------~~~~v~~~~~t~d~  108 (305)
                      ...|.+|||. |+||..+|..|+..|+  +|+++|+++.+  +..|....                ...+++.   ++| 
T Consensus        10 ~~~~~~ViGl-GyvGlp~A~~La~~G~--~V~~~D~~~~k--v~~L~~g~~pi~epgl~~ll~~~~~~g~l~~---ttd-   80 (431)
T 3ojo_A           10 HGSKLTVVGL-GYIGLPTSIMFAKHGV--DVLGVDINQQT--IDKLQNGQISIEEPGLQEVYEEVLSSGKLKV---STT-   80 (431)
T ss_dssp             --CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESS-
T ss_pred             cCCccEEEee-CHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHCCCCCcCCCCHHHHHHhhcccCceEE---eCc-
Confidence            3469999998 9999999999999999  99999998621  11122110                0123543   234 


Q ss_pred             HHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe-cCCCCc
Q 021932          109 EDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI-SNPVNS  168 (305)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~-tNPvd~  168 (305)
                         +++||+||++.+.|.......    .-++..+....+.|.++. |..+|+.- |-|...
T Consensus        81 ---~~~aDvvii~VpTp~~~~~~~----~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgt  135 (431)
T 3ojo_A           81 ---PEASDVFIIAVPTPNNDDQYR----SCDISLVMRALDSILPFLKKGNTIIVESTIAPKT  135 (431)
T ss_dssp             ---CCCCSEEEECCCCCBCSSSSC----BBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTH
T ss_pred             ---hhhCCEEEEEeCCCccccccC----CccHHHHHHHHHHHHHhCCCCCEEEEecCCChhH
Confidence               468999999998876432100    113344555566666655 44444333 345443

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.46  E-value=0.00074  Score=59.81  Aligned_cols=111  Identities=23%  Similarity=0.274  Sum_probs=64.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCC---CHHHHhC------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQ---QLEDALT------  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~---d~~~al~------  113 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++..     .+..+. .-+   +.+++++      
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~v~~~~~~~~~~~   84 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLEN-----GGFAVEVDVTKRASVDAAMQKAIDAL   84 (263)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTT-----CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-----CCeEEEEeCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  9999998752  111122211     111111 111   2223333      


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEec
Q 021932          114 -GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       114 -~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~----~i~~~I~~~~p~aiviv~t  163 (305)
                       +.|++|.+||......   .+   ....+..|+....    ...+.+.+....+.|++++
T Consensus        85 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~is  145 (263)
T 3ak4_A           85 GGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTA  145 (263)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence             8999999999653211   11   2334555654444    4444444444245566654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.46  E-value=0.001  Score=59.48  Aligned_cols=116  Identities=16%  Similarity=0.139  Sum_probs=73.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--------------CchhhhhhhcccCCceEEEEec-CCCH-
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTNAVVRGFLG-QQQL-  108 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--------------~~g~~~DL~~~~~~~~v~~~~~-t~d~-  108 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++.              +.....++...  ..++..+.. -+|. 
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~   84 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--GRKAYTAEVDVRDRA   84 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--TSCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhc--CCceEEEEccCCCHH
Confidence            345899999999999999999999998  999999862              01111122221  223332211 1222 


Q ss_pred             --HHHh-------CCCCEEEEcCCCCCCCC-C---chhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          109 --EDAL-------TGMDIVIIPAGVPRKPG-M---TRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       109 --~~al-------~~aDiVIi~ag~~~~~g-~---~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                        ++.+       ...|++|.+||...... .   ...+.+..|+.....+.+.+.++- ..+.|++++.
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence              2222       37999999999753221 1   234567788888888888887764 4566776664

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.46  E-value=0.0015  Score=58.55  Aligned_cols=117  Identities=15%  Similarity=0.086  Sum_probs=68.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-CceEEEEec-CCCH---HHHh-----
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLG-QQQL---EDAL-----  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~-t~d~---~~al-----  112 (305)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|+++  +.....++..... ...+..+.. -+|.   ++.+     
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA   87 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999998  899999876  2223334443211 113433221 1222   2222     


Q ss_pred             --CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEec
Q 021932          113 --TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLIS  163 (305)
Q Consensus       113 --~~aDiVIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~t  163 (305)
                        ...|++|.+||.....+    .+   ....+..|+.....+.+.+.+.   ...+.|+++|
T Consensus        88 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~is  150 (281)
T 3svt_A           88 WHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGIS  150 (281)
T ss_dssp             HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence              36799999999632221    11   2335566766554444443332   2345666665

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.46  E-value=0.00084  Score=59.16  Aligned_cols=104  Identities=19%  Similarity=0.245  Sum_probs=63.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc---h---hhhhhhcccCCceEEEEecCCCHHHHh------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---G---VTADISHMDTNAVVRGFLGQQQLEDAL------  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~---g---~~~DL~~~~~~~~v~~~~~t~d~~~al------  112 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++..   +   ...|+.+.            .+.++++      
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~D~~d~------------~~~~~~~~~~~~~   71 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA--KVTGFDQAFTQEQYPFATEVMDVADA------------AQVAQVCQRLLAE   71 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCCCSSCCSSEEEECCTTCH------------HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCchhhhcCCceEEEcCCCCH------------HHHHHHHHHHHHH
Confidence            345899999999999999999999998  99999987521   0   00111111            1122222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEec
Q 021932          113 -TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~t  163 (305)
                       .+.|++|.+||.....   ..+   ..+.+..|+...    +.+.+.+.+... +.|+++|
T Consensus        72 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~is  132 (250)
T 2fwm_X           72 TERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRG-GAIVTVA  132 (250)
T ss_dssp             CSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCC-CEEEEEC
Confidence             3799999999974321   112   233455565544    444444455543 4555554

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.45  E-value=0.0019  Score=57.10  Aligned_cols=115  Identities=15%  Similarity=0.098  Sum_probs=67.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al------  112 (305)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...  ..++..+.. -+|   .++++      
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSERQELMNTVANH   83 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  8999998752  2222233221  122332211 122   22222      


Q ss_pred             --CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecC
Q 021932          113 --TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN  164 (305)
Q Consensus       113 --~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I----~~~~p~aiviv~tN  164 (305)
                        ...|++|.+||......   .+   ....+..|+.....+.+.+    .+. ..+.|+++|.
T Consensus        84 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS  146 (260)
T 2ae2_A           84 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISS  146 (260)
T ss_dssp             TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECC
T ss_pred             cCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence              57999999999653211   11   2334556665555554444    433 3455666653

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.45  E-value=0.0009  Score=59.47  Aligned_cols=134  Identities=15%  Similarity=0.120  Sum_probs=66.5

Q ss_pred             CCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCC
Q 021932           20 HPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTN   96 (305)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~   96 (305)
                      ++.+++..++...|..-.       +.++|.|+||+|.+|..++..|+..|.  +|++.+...   ......++...  .
T Consensus         7 ~~~~~~~~~~n~~~~~~l-------~~k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~--~   75 (267)
T 4iiu_A            7 HSSGVDLGTENLYFQSNA-------MSRSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVAN--G   75 (267)
T ss_dssp             -------------------------CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--T
T ss_pred             cccccccCChhhhhcccc-------CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc--C
Confidence            445556666664443322       234799999999999999999999998  786665433   12222333322  1


Q ss_pred             ceEEEEec-CCC---HHHHh-------CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHH----HHHHHHhCC
Q 021932           97 AVVRGFLG-QQQ---LEDAL-------TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTL----CEGIAKCCP  155 (305)
Q Consensus        97 ~~v~~~~~-t~d---~~~al-------~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i----~~~I~~~~p  155 (305)
                      .++..+.. -+|   .++.+       ...|++|.+||......   .+   ....+..|+.....+    .+.+.+...
T Consensus        76 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~  155 (267)
T 4iiu_A           76 GNGRLLSFDVANREQCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQ  155 (267)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS
T ss_pred             CceEEEEecCCCHHHHHHHHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence            22332211 122   22223       38999999999754221   11   234456665544444    444444455


Q ss_pred             CcEEEEecC
Q 021932          156 KAIVNLISN  164 (305)
Q Consensus       156 ~aiviv~tN  164 (305)
                      .+.|+++|.
T Consensus       156 ~g~iv~isS  164 (267)
T 4iiu_A          156 GGRIITLSS  164 (267)
T ss_dssp             CEEEEEECC
T ss_pred             CcEEEEEcc
Confidence            677777664

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.45  E-value=0.001  Score=59.25  Aligned_cols=112  Identities=15%  Similarity=0.137  Sum_probs=65.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch-----hhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g-----~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++..+     ...|+.+...   +...  -....+.+.+.|++|.
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~Dl~~~~~---v~~~--~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            8 DKVVIVTGASMGIGRAIAERFVDEGS--KVIDLSIHDPGEAKYDHIECDVTNPDQ---VKAS--IDHIFKEYGSISVLVN   80 (264)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSCCCSCSSEEEECCTTCHHH---HHHH--HHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEecCcccCCceEEEEecCCCHHH---HHHH--HHHHHHHcCCCCEEEE
Confidence            35899999999999999999999998  999999875221     1122222110   0000  0011122347999999


Q ss_pred             cCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          121 PAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       121 ~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                      +||.....   ..+   ....+..|+.....+.+.+.+.   ...+.|+++|.
T Consensus        81 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS  133 (264)
T 2dtx_A           81 NAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISS  133 (264)
T ss_dssp             CCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence            99964321   112   2345566766655544444433   12355666653

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.43  E-value=0.00089  Score=60.16  Aligned_cols=114  Identities=18%  Similarity=0.291  Sum_probs=66.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHh-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------  112 (305)
                      .++|.|+||+|.+|..++..|++.|.  +|+++++++  ......++...  ..++..+.. -+|   .++++       
T Consensus        44 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           44 NKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEEISEVINKILTEH  119 (285)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhc--CCceeEEECCCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999887  899988764  22222233321  122332211 122   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      .+.|+||.+||.....   ..+   ..+.+..|+..    .+.+.+.+.+.. .+.|+++|.
T Consensus       120 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS  180 (285)
T 2c07_A          120 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISS  180 (285)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            4789999999975321   111   23445666655    455555554444 355555553

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.43  E-value=0.00078  Score=60.51  Aligned_cols=113  Identities=16%  Similarity=0.150  Sum_probs=66.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHhC-------
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-------  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~-------  113 (305)
                      +++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++...   ..+..+.. -+|   .+++++       
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            4899999999999999999999998  8999998752  2222223221   12222211 112   233343       


Q ss_pred             CCCEEEEcCCCCCC--C--CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRK--P--GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~--~--g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..|++|.+||....  +  ..+   ....+..|+..    .+.+.+.+.+......|++++.
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS  158 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGS  158 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            35999999997532  1  111   22345556554    5556666666554425555553

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.43  E-value=0.00044  Score=60.92  Aligned_cols=115  Identities=16%  Similarity=0.184  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CCC--chhhhhhhcccCCceEEEEec-CCC---HHHHhC-----
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-----  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~-~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~-----  113 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+ ++.  .....++...  ...+..+.. -+|   .++.++     
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (261)
T 1gee_A            7 GKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999998  8999998 431  1122233221  122332211 122   222333     


Q ss_pred             --CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecC
Q 021932          114 --GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 --~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~----~i~~~I~~~~p~aiviv~tN  164 (305)
                        +.|++|.+||......   .+   ..+.+..|+....    .+.+.+.+..+.+.|+++|.
T Consensus        83 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  145 (261)
T 1gee_A           83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS  145 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence              7899999998653211   11   2234555655444    44444544443456666654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.43  E-value=0.001  Score=58.94  Aligned_cols=115  Identities=11%  Similarity=0.077  Sum_probs=68.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHh-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++  +.....++...  ..++..+.. -+|   .++.+       
T Consensus         6 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            6 EKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQF--PGQILTVQMDVRNTDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCS--TTCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  899999876  22222333322  123332211 122   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ...|++|.+||......   .+   ....+..|+...    +.+.+.+.+....+.|++++.
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  143 (257)
T 3imf_A           82 GRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVA  143 (257)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECc
Confidence            37899999999643211   11   223455666544    444444445555666666653

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.42  E-value=0.00049  Score=55.13  Aligned_cols=70  Identities=13%  Similarity=0.098  Sum_probs=45.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCH---HH-HhCCCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQL---ED-ALTGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~---~~-al~~aDiVIi~  121 (305)
                      +++|.|+|+ |.+|+.++..|...|+  +++++|.++..  ..++.+..  ..+... ..++.   ++ .++++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~--~V~~id~~~~~--~~~~~~~~--~~~~~g-d~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGK--KVLAVDKSKEK--IELLEDEG--FDAVIA-DPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTT--CEEEEC-CTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC--CcEEEC-CCCCHHHHHhCCcccCCEEEEe
Confidence            458999999 9999999999999998  99999997621  11222211  111111 11232   11 14689999998


Q ss_pred             CC
Q 021932          122 AG  123 (305)
Q Consensus       122 ag  123 (305)
                      .+
T Consensus        78 ~~   79 (141)
T 3llv_A           78 GS   79 (141)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.42  E-value=0.00067  Score=59.10  Aligned_cols=113  Identities=18%  Similarity=0.170  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch--hhhhhhcccCCceEEEEecCCC---HHHHhC---CCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQ---LEDALT---GMD  116 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g--~~~DL~~~~~~~~v~~~~~t~d---~~~al~---~aD  116 (305)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++...  ...++.    ...+... .-+|   .+++++   ..|
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----~~~~~~~-D~~~~~~~~~~~~~~~~id   78 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECP----GIEPVCV-DLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST----TCEEEEC-CTTCHHHHHHHHTTCCCCC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC----CCCEEEE-eCCCHHHHHHHHHHcCCCC
Confidence            345899999999999999999999998  899999865211  111111    1111111 1122   333343   579


Q ss_pred             EEEEcCCCCCCCC---C---chhhHHHhhHHHHHHHHH----HHHHhCCCcEEEEecC
Q 021932          117 IVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCE----GIAKCCPKAIVNLISN  164 (305)
Q Consensus       117 iVIi~ag~~~~~g---~---~r~d~~~~N~~i~~~i~~----~I~~~~p~aiviv~tN  164 (305)
                      +||.+||......   .   .....+..|+.....+.+    .+.+....+.|+++|.
T Consensus        79 ~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS  136 (244)
T 3d3w_A           79 LLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSS  136 (244)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             EEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCc
Confidence            9999998653211   1   123455667665444444    4444442456666654

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.41  E-value=0.0016  Score=58.49  Aligned_cols=116  Identities=21%  Similarity=0.137  Sum_probs=72.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEec-CCCH---HH-------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG-QQQL---ED-------  110 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~~-t~d~---~~-------  110 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|++..   .....++...  ..++..+.. -+|.   ++       
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~  103 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKN--GSDAACVKANVGVVEDIVRMFEEAVK  103 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHh--CCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999998  8999998752   1112223221  112222211 1121   11       


Q ss_pred             HhCCCCEEEEcCCCCCCCC---C---chhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          111 ALTGMDIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       111 al~~aDiVIi~ag~~~~~g---~---~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                      .+...|++|.+||......   .   +....+..|+.....+.+.+.++- ..+.|+++|.
T Consensus       104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            2347899999999753211   1   123457778887777777777662 3456666653

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.41  E-value=0.00058  Score=61.66  Aligned_cols=117  Identities=16%  Similarity=0.260  Sum_probs=68.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHH-----
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDA-----  111 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-----  111 (305)
                      +.+.+.+.|+||+|.+|..++..|+..|.  +|+++|+++  +...+.++...  ...+..+.. -+|   .+++     
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~  100 (283)
T 3v8b_A           25 NQPSPVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGA--GGQAIALEADVSDELQMRNAVRDLV  100 (283)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTT--TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            33445899999999999999999999998  999999876  22223334322  122222211 122   2222     


Q ss_pred             --hCCCCEEEEcCCCCCC--C--CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          112 --LTGMDIVIIPAGVPRK--P--GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       112 --l~~aDiVIi~ag~~~~--~--g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                        +...|++|.+||....  +  ..+   ....+..|+..    .+.+.+.+.+.. .+.|+++|.
T Consensus       101 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS  165 (283)
T 3v8b_A          101 LKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG-GGAIVVVSS  165 (283)
T ss_dssp             HHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CceEEEEcC
Confidence              2379999999997422  1  122   23345666554    444445555554 455666654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.41  E-value=0.0015  Score=56.98  Aligned_cols=120  Identities=15%  Similarity=0.151  Sum_probs=68.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhhhhhhccc-CCceEEEEec-CCC---HHH-----
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD-TNAVVRGFLG-QQQ---LED-----  110 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~-~~~~v~~~~~-t~d---~~~-----  110 (305)
                      ..+.+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++.... ....+..... .+|   .++     
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~   88 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARV   88 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHH
Confidence            34456899999999999999999999998  899999876  222222333221 1111211111 012   112     


Q ss_pred             --HhCCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          111 --ALTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       111 --al~~aDiVIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                        .+...|++|.+||.....+    .+   ....+..|+.....+.+.+.+.   ...+.|++++.
T Consensus        89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS  154 (247)
T 3i1j_A           89 EHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSS  154 (247)
T ss_dssp             HHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECC
T ss_pred             HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcc
Confidence              2237899999999642221    11   2334556665555554444322   23456666653

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.41  E-value=0.00047  Score=61.56  Aligned_cols=116  Identities=16%  Similarity=0.184  Sum_probs=64.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhccc-CCceEEEEec-CCC---HHHHhC-----
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD-TNAVVRGFLG-QQQ---LEDALT-----  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~-~~~~v~~~~~-t~d---~~~al~-----  113 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.... ...++..+.. -+|   .+++++     
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            6 EKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999998  9999998752  22222331000 0122332211 122   233344     


Q ss_pred             --CCCEEEEcCCCCCCC---CC----c---hhhHHHhhHHHHHH----HHHHHHHhCCCcEEEEecCC
Q 021932          114 --GMDIVIIPAGVPRKP---GM----T---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISNP  165 (305)
Q Consensus       114 --~aDiVIi~ag~~~~~---g~----~---r~d~~~~N~~i~~~----i~~~I~~~~p~aiviv~tNP  165 (305)
                        +.|++|.+||.....   ..    +   ....+..|+.....    +.+.+.+..  +.|+++|.-
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~  149 (278)
T 1spx_A           84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSI  149 (278)
T ss_dssp             HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCT
T ss_pred             cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEecc
Confidence              899999999864321   01    2   22345556554444    444444333  566666543

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.41  E-value=0.0012  Score=58.81  Aligned_cols=117  Identities=14%  Similarity=0.170  Sum_probs=70.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec----CCCHHHH-------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG----QQQLEDA-------  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~----t~d~~~a-------  111 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|++.  +.....++.... ..++..+..    ..+.++.       
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~   95 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAEA   95 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  899999875  222223333211 122222211    1122222       


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +...|++|.+||......   .+   ....+..|+.    +.+.+.+.+.+....+.|+++|.
T Consensus        96 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  158 (266)
T 4egf_A           96 FGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVAS  158 (266)
T ss_dssp             HTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence            238999999999754221   11   2234555654    45555666666655667777654

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.40  E-value=0.0021  Score=56.57  Aligned_cols=113  Identities=20%  Similarity=0.232  Sum_probs=67.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEec-CCCH---HHH-------hC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG-QQQL---EDA-------LT  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~-t~d~---~~a-------l~  113 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++ .... .++...  ..++..+.. -+|.   +++       +.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~-~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (249)
T 2ew8_A            7 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAE-AAIRNL--GRRVLTVKCDVSQPGDVEAFGKQVISTFG   81 (249)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHH-HHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCchhHHH-HHHHhc--CCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            35899999999999999999999998  899999876 2211 123221  122322211 1222   222       34


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..|++|.+||......   .+   ..+.+..|+..    .+.+.+.+.+.. .+.|+++|.
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  141 (249)
T 2ew8_A           82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTS  141 (249)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcc
Confidence            7899999999653211   11   23345666655    455555566554 355565553

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.40  E-value=0.00069  Score=60.15  Aligned_cols=113  Identities=16%  Similarity=0.161  Sum_probs=65.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCCH---HH-------Hh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---ED-------AL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d~---~~-------al  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.  +.....++...  ..++..+.. -+|.   ++       .+
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            7 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREK--GVEARSYVCDVTSEEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT--TSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999998  899999875  22222333321  122322211 1222   11       22


Q ss_pred             CCCCEEEEcCCCC-CC-C--CCc---hhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEec
Q 021932          113 TGMDIVIIPAGVP-RK-P--GMT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~-~~-~--g~~---r~d~~~~N~~i~~----~i~~~I~~~~p~aiviv~t  163 (305)
                      ...|++|.+||.. .. +  ..+   ....+..|+....    .+.+.+.+.. .+.|+++|
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is  143 (262)
T 1zem_A           83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTA  143 (262)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEc
Confidence            3789999999864 21 1  111   2234555655444    4444444433 35566655

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.40  E-value=0.00059  Score=61.37  Aligned_cols=115  Identities=14%  Similarity=0.106  Sum_probs=68.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCCH---HHHh-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---EDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d~---~~al-------  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++  +.....++...  ...+..+.. -+|.   ++.+       
T Consensus        24 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           24 PQTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAA--GHDVDGSSCDVTSTDEVHAAVAAAVERF   99 (279)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  899999876  22223334332  122332211 1222   1222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh-----CCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC-----CPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~-----~p~aiviv~tN  164 (305)
                      ...|++|.+||......   .+   ..+.+..|+.....+.+.+.+.     ...+.|+++|.
T Consensus       100 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS  162 (279)
T 3sju_A          100 GPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIAS  162 (279)
T ss_dssp             CSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECC
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECC
Confidence            37899999999753211   11   2344566776665565554331     23456666653

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.39  E-value=0.00056  Score=59.83  Aligned_cols=75  Identities=21%  Similarity=0.232  Sum_probs=49.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-CC--chhhhhhhcccCCceEEEEec-CCC---HHHHhC-----
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-----  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~-~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~-----  113 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|++ ..  .....++...  ..++..+.. -+|   .+++++     
T Consensus         7 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (258)
T 3afn_B            7 GKRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRAD--GGDAAFFAADLATSEACQQLVDEFVAK   82 (258)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999998  89999997 42  1222233221  123332211 122   233343     


Q ss_pred             --CCCEEEEcCCC
Q 021932          114 --GMDIVIIPAGV  124 (305)
Q Consensus       114 --~aDiVIi~ag~  124 (305)
                        +.|+||.+||.
T Consensus        83 ~g~id~vi~~Ag~   95 (258)
T 3afn_B           83 FGGIDVLINNAGG   95 (258)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence              89999999986

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.39  E-value=0.00042  Score=61.24  Aligned_cols=110  Identities=14%  Similarity=0.119  Sum_probs=65.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHH-------h
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------L  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-------l  112 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.     .++..+.. -+|   .+++       +
T Consensus         6 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (253)
T 1hxh_A            6 GKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELG-----ERSMFVRHDVSSEADWTLVMAAVQRRL   78 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  8999998752  11112221     11222111 112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ...|++|.+||.....   ..+   ....+..|+.    ..+.+.+.+.+..  +.|+++|.
T Consensus        79 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS  138 (253)
T 1hxh_A           79 GTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMAS  138 (253)
T ss_dssp             CSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcc
Confidence            3569999999975321   112   2334556654    5556666665544  66666654

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.39  E-value=0.00035  Score=60.81  Aligned_cols=114  Identities=22%  Similarity=0.257  Sum_probs=64.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHhC------
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDALT------  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~-D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~------  113 (305)
                      ++|.|+||+|.+|..++..|+..|.  +|++. ++++.  .....++...  ..++..+.. -+|   .+++++      
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999998  88884 66541  1122223221  122332211 122   223333      


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          114 -GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       114 -~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                       +.|++|.+||......   .+   ..+.+..|+.....+.+.+.+.   ...+.|+++|.
T Consensus        78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  138 (244)
T 1edo_A           78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIAS  138 (244)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence             7899999999754211   11   2335566766544444444332   23455666653

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.38  E-value=0.00066  Score=60.53  Aligned_cols=117  Identities=9%  Similarity=-0.012  Sum_probs=64.8

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCC---HHH-------H
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LED-------A  111 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~~-------a  111 (305)
                      ++.+.++|.|+||+|.+|..++..|+..|.  +|+++|+++... ..++.... ...+. . .-+|   .++       .
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~-~~~~~-~-Dv~~~~~v~~~~~~~~~~   96 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGH--RVIISYRTEHAS-VTELRQAG-AVALY-G-DFSCETGIMAFIDLLKTQ   96 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESSCCHH-HHHHHHHT-CEEEE-C-CTTSHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCChHHH-HHHHHhcC-CeEEE-C-CCCCHHHHHHHHHHHHHh
Confidence            445556899999999999999999999998  899999976321 11122111 00011 0 0112   112       2


Q ss_pred             hCCCCEEEEcCCCCCCCC--Cch---hhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          112 LTGMDIVIIPAGVPRKPG--MTR---DDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~g--~~r---~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                      +...|++|.+||......  .+.   ...+..|+.....+.+.+..+   ...+.|+++|.
T Consensus        97 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS  157 (260)
T 3gem_A           97 TSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISD  157 (260)
T ss_dssp             CSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             cCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence            247899999999653322  222   234566655444444444322   23356666653

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.38  E-value=0.00057  Score=61.28  Aligned_cols=115  Identities=17%  Similarity=0.249  Sum_probs=66.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---HHHH-------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a-------  111 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++  +.....++....  ..+..+. .-+|   .++.       
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAG--LEGRGAVLNVNDATAVDALVESTLKE  102 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            345888999999999999999999998  999999876  222222333221  1111111 1112   2222       


Q ss_pred             hCCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecC
Q 021932          112 LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISN  164 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~----~~I~~~~p~aiviv~tN  164 (305)
                      +...|++|.+||.....   ..+   ....+..|+.....+.    +.+.+.. .+.|+++|.
T Consensus       103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  164 (270)
T 3ftp_A          103 FGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKAR-GGRIVNITS  164 (270)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECc
Confidence            23789999999965321   112   2334566665444444    4444443 456666653

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.38  E-value=0.0023  Score=56.89  Aligned_cols=118  Identities=13%  Similarity=0.056  Sum_probs=69.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCCH---HH-------
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQL---ED-------  110 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d~---~~-------  110 (305)
                      .+.+++.|+||+|.+|..++..|+..|.  .|++.|+++  +.....++.......++..+. .-+|.   ++       
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACER   83 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3445899999999999999999999998  899999876  222233343311111233221 11222   11       


Q ss_pred             HhCCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEec
Q 021932          111 ALTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLIS  163 (305)
Q Consensus       111 al~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~t  163 (305)
                      .+...|++|.+||.....   ..+   ....+..|+.....+.+.+.++   ...+.|+++|
T Consensus        84 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~is  145 (265)
T 3lf2_A           84 TLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVN  145 (265)
T ss_dssp             HHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEE
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEEC
Confidence            224789999999974321   122   2345666776655555555433   2345566654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.38  E-value=0.0024  Score=56.47  Aligned_cols=118  Identities=15%  Similarity=0.157  Sum_probs=68.9

Q ss_pred             CCCCEEEEEcCCCc-hHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHh----
Q 021932           44 SPGFKVAVLGAAGG-IGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL----  112 (305)
Q Consensus        44 ~~~~KI~IIGaaG~-VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al----  112 (305)
                      .+.+++.|+||+|+ +|..++..|++.|.  +|+++|++.  ......++.... ..++..+.. -+|   .++.+    
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~   96 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTV   96 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHH
Confidence            34568999999875 99999999999998  899999876  222223332221 123333221 122   22222    


Q ss_pred             ---CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          113 ---TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ---~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                         ...|++|.+||......   .+   ....+..|+..    .+.+.+.+.+....+.|++++.
T Consensus        97 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  161 (266)
T 3o38_A           97 EKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNAS  161 (266)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECC
T ss_pred             HHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence               36799999999753221   12   22345556544    4444445544445666776654

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.37  E-value=0.0032  Score=56.54  Aligned_cols=48  Identities=17%  Similarity=0.090  Sum_probs=32.5

Q ss_pred             cccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           32 GLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        32 ~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .|++.+... .+.+.+++.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus        10 ~~~~~~~~~-~~l~~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~   57 (288)
T 2x9g_A           10 HSSGLVPRG-SHMEAPAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNS   57 (288)
T ss_dssp             -------------CCCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             cccccCCCC-cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            344444444 333446899999999999999999999998  899999875

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.37  E-value=0.00061  Score=59.93  Aligned_cols=112  Identities=18%  Similarity=0.162  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecCCC---HHHHh-------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQ---LEDAL-------  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d---~~~al-------  112 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.     ...... .-+|   .++++       
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~-D~~~~~~~~~~~~~~~~~~   75 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVG-----AHPVVM-DVADPASVERGFAEALAHL   75 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTT-----CEEEEC-CTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CEEEEe-cCCCHHHHHHHHHHHHHHc
Confidence            345899999999999999999999998  9999998652  11111110     011100 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---C---chhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~---~r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                      ...|++|.+||......   .   ...+.+..|+.....+.+.+.++   ...+.|+++|.
T Consensus        76 g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS  136 (245)
T 1uls_A           76 GRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTAS  136 (245)
T ss_dssp             SSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence            35899999999753211   1   12345666776665555555443   23456666654

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.37  E-value=0.00054  Score=60.34  Aligned_cols=119  Identities=16%  Similarity=0.109  Sum_probs=67.5

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CCC--chhhhhhhcccCCceEEEEe-cCCC---HHHHh--
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL--  112 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~-~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al--  112 (305)
                      ...+.++|.|+||+|.+|..++..|++.|.  +|++.|. +..  .....++....  .++..+. .-+|   .++.+  
T Consensus         9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~   84 (256)
T 3ezl_A            9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGF--RVVAGCGPNSPRRVKWLEDQKALG--FDFYASEGNVGDWDSTKQAFDK   84 (256)
T ss_dssp             ----CEEEEETTTTSHHHHHHHHHHHHTTE--EEEEEECTTCSSHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeeEEEecCCCCHHHHHHHHHH
Confidence            455567999999999999999999999998  8888884 332  22222332221  1222211 1112   22223  


Q ss_pred             -----CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecCC
Q 021932          113 -----TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISNP  165 (305)
Q Consensus       113 -----~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tNP  165 (305)
                           ...|++|.+||.....   ..+   ....+..|+..    .+.+.+.+.+... +.|+++|..
T Consensus        85 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~  151 (256)
T 3ezl_A           85 VKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGW-GRIINISSV  151 (256)
T ss_dssp             HHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCC
T ss_pred             HHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcch
Confidence                 3789999999975322   112   23355666655    5555555565543 556666553

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.36  E-value=0.0013  Score=59.17  Aligned_cols=113  Identities=17%  Similarity=0.065  Sum_probs=73.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch--hhhhhhcccCCceEEEEec-CCC---HHHHhC---
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLG-QQQ---LEDALT---  113 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g--~~~DL~~~~~~~~v~~~~~-t~d---~~~al~---  113 (305)
                      +.+.++|.|+||+|.+|..++..|+..|.  +|+++|+++...  ...++     ..++..+.. -+|   .++.++   
T Consensus        13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~~~   85 (291)
T 3rd5_A           13 SFAQRTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADGVS   85 (291)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHHHHHHHHHTCC
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHHHHHHHHHhcC
Confidence            33456899999999999999999999998  999999875221  11122     123332211 122   233333   


Q ss_pred             CCCEEEEcCCCCCCC----CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          114 GMDIVIIPAGVPRKP----GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~----g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ..|++|.+||.....    .+.....+..|+.....+.+.+.+...+. |+++|
T Consensus        86 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~r-iv~is  138 (291)
T 3rd5_A           86 GADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDR-VVTVS  138 (291)
T ss_dssp             CEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEE-EEEEC
T ss_pred             CCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-eeEee
Confidence            569999999974322    12234567889888888888887776444 44444

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.35  E-value=0.0021  Score=55.82  Aligned_cols=115  Identities=18%  Similarity=0.191  Sum_probs=66.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh---
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL---  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~-----el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al---  112 (305)
                      ++|.|+||+|.+|..++..|+..|...     +|+++|++..  .....++...  ..++..+.. -+|   .++++   
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc--CCeeeEEEecCCCHHHHHHHHHHH
Confidence            479999999999999999999887532     7899998652  2222233221  123333211 122   22223   


Q ss_pred             ----CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecC
Q 021932          113 ----TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN  164 (305)
Q Consensus       113 ----~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I----~~~~p~aiviv~tN  164 (305)
                          .+.|++|.+||......   .+   ....+..|+.....+.+.+    .+.. .+.|+++|.
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS  145 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH-SGHIFFITS  145 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEEec
Confidence                27999999999753211   11   2334556665554444444    4333 455666654

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.34  E-value=0.0029  Score=55.68  Aligned_cols=113  Identities=18%  Similarity=0.230  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHH-------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-------  111 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.     .++..+.. -+|   .++.       
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIG-----KKARAIAADISDPGSVKALFAEIQAL   77 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  8999998752  11122221     11111110 011   2222       


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +...|++|.+||......   .+   ....+..|+..    .+.+.+.+.+....+.|++++.
T Consensus        78 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  140 (247)
T 3rwb_A           78 TGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIAS  140 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECc
Confidence            237999999999753221   11   23345556554    4455555777665667776654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.34  E-value=0.00071  Score=55.17  Aligned_cols=102  Identities=10%  Similarity=0.031  Sum_probs=59.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-C---CHHHH-hCCCCEEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-Q---QLEDA-LTGMDIVII  120 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-~---d~~~a-l~~aDiVIi  120 (305)
                      ..||.|+|+ |.+|+.++..|...|+  +++++|.+.. .....+.... ...+..+.+. +   .++++ ++++|.||+
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~--~V~vid~~~~-~~~~~~~~~~-~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPE-DDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCH-HHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCCh-HHHHHHHHhh-cCCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence            358999998 9999999999999888  9999998631 1111111110 0011111111 1   23344 789999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE-ecCCCC
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL-ISNPVN  167 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv-~tNPvd  167 (305)
                      +.+..           ..|.    .++...++..|+..++. +.||-.
T Consensus        78 ~~~~d-----------~~n~----~~~~~a~~~~~~~~ii~~~~~~~~  110 (153)
T 1id1_A           78 LSDND-----------ADNA----FVVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             CSSCH-----------HHHH----HHHHHHHHHTSSSCEEEECSSGGG
T ss_pred             ecCCh-----------HHHH----HHHHHHHHHCCCCEEEEEECCHHH
Confidence            86421           2343    23444455566655544 456654

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.34  E-value=0.00041  Score=61.27  Aligned_cols=117  Identities=16%  Similarity=0.254  Sum_probs=68.7

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHHh---
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL---  112 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al---  112 (305)
                      ++.+.+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.     ..+..+. .-+|   .++.+   
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~   77 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIG-----DAALAVAADISKEADVDAAVEAA   77 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTSHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHH
Confidence            344456899999999999999999999998  8999998762  11122221     1112111 1112   22223   


Q ss_pred             ----CCCCEEEEcCCCCCCCC----Cch---hhHHHhhHH----HHHHHHHHHHHhC---CCcEEEEecCC
Q 021932          113 ----TGMDIVIIPAGVPRKPG----MTR---DDLFNINAG----IVKTLCEGIAKCC---PKAIVNLISNP  165 (305)
Q Consensus       113 ----~~aDiVIi~ag~~~~~g----~~r---~d~~~~N~~----i~~~i~~~I~~~~---p~aiviv~tNP  165 (305)
                          ...|++|.+||....++    .+.   ...+..|+.    +.+.+.+.+.+..   ..+.|++++..
T Consensus        78 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~  148 (261)
T 3n74_A           78 LSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVAST  148 (261)
T ss_dssp             HHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCT
T ss_pred             HHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCch
Confidence                37899999999754222    111   233445544    4555666665543   24566666543

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.33  E-value=0.00087  Score=59.91  Aligned_cols=114  Identities=24%  Similarity=0.232  Sum_probs=66.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec--CCCHHHHh-------C
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG--QQQLEDAL-------T  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~--t~d~~~al-------~  113 (305)
                      +.+++.|+||+|.+|..++..|++.|.  +|+++|+++.  .....++..   ........-  ..+.++.+       .
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVGR---GAVHHVVDLTNEVSVRALIDFTIDTFG   84 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHCT---TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC---CeEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            345899999999999999999999998  8999999762  222222211   011111100  01122223       3


Q ss_pred             CCCEEEEcCCCCCC-CC----Cc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRK-PG----MT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~-~g----~~---r~d~~~~N~~i~~~i~~~I----~~~~p~aiviv~tN  164 (305)
                      ..|++|.+||.... ..    .+   ....+..|+.....+.+.+    .+.. .+.|+++|.
T Consensus        85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS  146 (271)
T 3tzq_B           85 RLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAG-GGAIVNISS  146 (271)
T ss_dssp             CCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEECC
Confidence            89999999997522 11    11   2345666766555554444    5443 456666653

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.33  E-value=0.0018  Score=57.15  Aligned_cols=111  Identities=16%  Similarity=0.167  Sum_probs=65.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh-hhhhhcccCCceEEEEecCCC---HHHH-------hCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTNAVVRGFLGQQQ---LEDA-------LTG  114 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~-~~DL~~~~~~~~v~~~~~t~d---~~~a-------l~~  114 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++.... ..++.    . ..... .-+|   .+++       +..
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~----~-~~~~~-D~~~~~~~~~~~~~~~~~~g~   77 (256)
T 2d1y_A            6 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIG----G-AFFQV-DLEDERERVRFVEEAAYALGR   77 (256)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHT----C-EEEEC-CTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHhh----C-CEEEe-eCCCHHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999998  9999998763211 11121    0 11100 1112   2222       347


Q ss_pred             CCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          115 MDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       115 aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                      .|++|.+||.....   ..+   ..+.+..|+.....+.+.+.+.   ...+.|+++|.
T Consensus        78 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS  136 (256)
T 2d1y_A           78 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVAS  136 (256)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            89999999965321   111   2345666766555555544332   22456666653

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.33  E-value=0.0026  Score=56.72  Aligned_cols=116  Identities=14%  Similarity=0.148  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHh------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al------  112 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++  +.....++.... ..++..+.. -+|   .++++      
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   96 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEK   96 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  899999875  222222331110 112222211 122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecC
Q 021932          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISN  164 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~----I~~~~p~aiviv~tN  164 (305)
                       ...|++|.+||......   .+   ....+..|+.....+.+.    +.+.. .+.|+++|.
T Consensus        97 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS  158 (267)
T 1vl8_A           97 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIGS  158 (267)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence             37899999999753221   11   233455666555544444    44333 345555543

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=97.32  E-value=0.0001  Score=62.49  Aligned_cols=110  Identities=14%  Similarity=0.163  Sum_probs=67.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecCCCHHHHhC---CCCEEEEc
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALT---GMDIVIIP  121 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~~al~---~aDiVIi~  121 (305)
                      ++|.|+||+|.+|..++..|+..    +|+++|+++.  .....++.......++.   ...+++++++   +.|+||.+
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGARALPADLA---DELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTCEECCCCTT---SHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccCcEEEeeCC---CHHHHHHHHHhcCCCCEEEEC
Confidence            47999999999999999998876    8999998652  11111111100000110   0112334455   89999999


Q ss_pred             CCCCCCC------CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          122 AGVPRKP------GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       122 ag~~~~~------g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +|.....      ..+....+..|+.....+.+.+.+. +.+.|+++|.
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS  121 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGA  121 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECC
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcC
Confidence            9865321      1233456778888888888887433 3355666654

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.32  E-value=0.0016  Score=58.43  Aligned_cols=115  Identities=15%  Similarity=0.109  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe-cCCC---HHHHh-------
Q 021932           46 GFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~--VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al-------  112 (305)
                      .++|.|+||+|+  +|..++..|+..|.  +|+++|++.......++.....  .+..+. .-+|   .++.+       
T Consensus        26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (280)
T 3nrc_A           26 GKKILITGLLSNKSIAYGIAKAMHREGA--ELAFTYVGQFKDRVEKLCAEFN--PAAVLPCDVISDQEIKDLFVELGKVW  101 (280)
T ss_dssp             TCEEEECCCCSTTCHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHGGGC--CSEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHcCC--EEEEeeCchHHHHHHHHHHhcC--CceEEEeecCCHHHHHHHHHHHHHHc
Confidence            458999999877  99999999999998  8999999763222333332211  112111 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---C-----Cc---hhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKP---G-----MT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g-----~~---r~d~~~~N~~i~~~i~~~I~~~~--p~aiviv~tN  164 (305)
                      ...|++|.+||.....   +     .+   ..+.+..|+.....+.+.+...-  ..+.|++++.
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS  166 (280)
T 3nrc_A          102 DGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTY  166 (280)
T ss_dssp             SSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEEC
T ss_pred             CCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence            3579999999975321   1     11   22345666665555555544431  2456666654

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.32  E-value=0.0008  Score=62.63  Aligned_cols=65  Identities=20%  Similarity=0.263  Sum_probs=46.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      .+||+|||+ |.+|.+++..|...|+  +|+++|.+....  .+..... .  +..   . ++++++++||+||++.
T Consensus        16 ~~~I~IIG~-G~mG~alA~~L~~~G~--~V~~~~~~~~~~--~~~a~~~-G--~~~---~-~~~e~~~~aDvVilav   80 (338)
T 1np3_A           16 GKKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSAT--VAKAEAH-G--LKV---A-DVKTAVAAADVVMILT   80 (338)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHH--HHHHHHT-T--CEE---E-CHHHHHHTCSEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCcC--EEEEEECChHHH--HHHHHHC-C--CEE---c-cHHHHHhcCCEEEEeC
Confidence            468999998 9999999999999887  899999865221  1111111 1  122   1 4668899999999986

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.31  E-value=0.0003  Score=62.40  Aligned_cols=68  Identities=16%  Similarity=0.256  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++|||+|||+ |.+|..++..|...+.  +|.++|+++..  ..++.... .  +..   .++++++++++|+||++..
T Consensus         2 ~~m~i~iiG~-G~mG~~~a~~l~~~g~--~v~~~~~~~~~--~~~~~~~~-g--~~~---~~~~~~~~~~~D~Vi~~v~   69 (259)
T 2ahr_A            2 NAMKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLER--SKEIAEQL-A--LPY---AMSHQDLIDQVDLVILGIK   69 (259)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHH--HHHHHHHH-T--CCB---CSSHHHHHHTCSEEEECSC
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHHc-C--CEe---eCCHHHHHhcCCEEEEEeC
Confidence            3579999998 9999999999988886  89999987521  11222110 0  111   2467788899999999863

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.31  E-value=0.00033  Score=67.28  Aligned_cols=138  Identities=17%  Similarity=0.211  Sum_probs=85.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCC---HHHH-hCCCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~~a-l~~aDiVIi~  121 (305)
                      .++|.|+|. |.+|+.++..|...|+  +++++|.++..  +..+.... ..-+.+  ..++   ++++ +++||+||++
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~~g~--~vvvId~d~~~--v~~~~~~g-~~vi~G--Dat~~~~L~~agi~~A~~viv~   75 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLSSGV--KMVVLDHDPDH--IETLRKFG-MKVFYG--DATRMDLLESAGAAKAEVLINA   75 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCHHH--HHHHHHTT-CCCEES--CTTCHHHHHHTTTTTCSEEEEC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHhCC-CeEEEc--CCCCHHHHHhcCCCccCEEEEC
Confidence            468999999 9999999999999998  99999998621  11122211 111211  1122   2233 6899999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec-CCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHH
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRAN  200 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t-NPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~  200 (305)
                      .+.               -..-..++..+++.+|+..|++-+ ++-+.      +.+++. |  -..|+--+..-+.++-
T Consensus        76 ~~~---------------~~~n~~i~~~ar~~~p~~~Iiara~~~~~~------~~L~~~-G--ad~Vi~~~~~~a~~la  131 (413)
T 3l9w_A           76 IDD---------------PQTNLQLTEMVKEHFPHLQIIARARDVDHY------IRLRQA-G--VEKPERETFEGALKTG  131 (413)
T ss_dssp             CSS---------------HHHHHHHHHHHHHHCTTCEEEEEESSHHHH------HHHHHT-T--CSSCEETTHHHHHHHH
T ss_pred             CCC---------------hHHHHHHHHHHHHhCCCCeEEEEECCHHHH------HHHHHC-C--CCEEECccHHHHHHHH
Confidence            641               233445666777888986655544 55432      223333 3  3456655555556666


Q ss_pred             HHHHHHhCCCCccee
Q 021932          201 TFVAEVLGLDPREVD  215 (305)
Q Consensus       201 ~~la~~l~v~~~~V~  215 (305)
                      ..+-..+|+++..+.
T Consensus       132 ~~~L~~lg~~~~~~~  146 (413)
T 3l9w_A          132 RLALESLGLGPYEAR  146 (413)
T ss_dssp             HHHHHHTTCCHHHHH
T ss_pred             HHHHHHcCCCHHHHH
Confidence            666677888887763

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.31  E-value=0.00086  Score=58.92  Aligned_cols=112  Identities=17%  Similarity=0.210  Sum_probs=65.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEec-CCC---HHHHh-------
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------  112 (305)
                      +++.|+||+|.+|..++..|++.|.  +|++.|...   ......++....  .++..+.. -+|   .++.+       
T Consensus         5 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            5 KSALVTGASRGIGRSIALQLAEEGY--NVAVNYAGSKEKAEAVVEEIKAKG--VDSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999998  899988754   122223333221  22222211 122   22223       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHH----HHHHHhCCCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~----~~I~~~~p~aiviv~t  163 (305)
                      ...|++|.+||.....   ..+   ....+..|+.....+.    +.+.+.. .+.|+++|
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~is  140 (246)
T 3osu_A           81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR-SGAIINLS  140 (246)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEc
Confidence            3789999999975321   112   2335566665444444    4445544 45555554

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.31  E-value=0.0009  Score=58.90  Aligned_cols=113  Identities=18%  Similarity=0.219  Sum_probs=65.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-----hhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-----GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-----g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++..     +...|+.+...   +...  -....+.+...|++|.
T Consensus        15 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~D~~~~~~---~~~~--~~~~~~~~g~id~lv~   87 (247)
T 1uzm_A           15 SRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSDA---VDRA--FTAVEEHQGPVEVLVS   87 (247)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHHH---HHHH--HHHHHHHHSSCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHhcCeeccCCCHHH---HHHH--HHHHHHHcCCCCEEEE
Confidence            35899999999999999999999997  89999987521     11223322110   0000  0011223447899999


Q ss_pred             cCCCCCCC---CCc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecCCC
Q 021932          121 PAGVPRKP---GMT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISNPV  166 (305)
Q Consensus       121 ~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~----I~~~~p~aiviv~tNPv  166 (305)
                      +||.....   ..+   ....+..|+.....+.+.    +.+. ..+.|+++|...
T Consensus        88 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~  142 (247)
T 1uzm_A           88 NAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIGSVS  142 (247)
T ss_dssp             ECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEECCHh
Confidence            99975321   111   234555666555444444    4433 345666666443

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.30  E-value=0.00047  Score=60.86  Aligned_cols=114  Identities=20%  Similarity=0.267  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEE-EecCCCHHHHh-------CC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRG-FLGQQQLEDAL-------TG  114 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~-~~~t~d~~~al-------~~  114 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++....  ..+.. .....+.++.+       ..
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~~~~~~~~~~g~   83 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDNG--KGMALNVTNPESIEAVLKAITDEFGG   83 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGE--EEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcccc--eEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            445899999999999999999999998  8999998762  21222222110  00110 00001122222       38


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEec
Q 021932          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       115 aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~t  163 (305)
                      .|++|.+||......   .+   ....+..|+...    +.+.+.+.+.. .+.|+++|
T Consensus        84 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~is  141 (248)
T 3op4_A           84 VDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKR-QGRIINVG  141 (248)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEc
Confidence            999999999753221   11   233455665544    44444454444 45566655

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.30  E-value=0.0011  Score=58.49  Aligned_cols=112  Identities=8%  Similarity=-0.019  Sum_probs=65.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch-hhhhhhcccCCceEEEEecCCCHHHHh-------CCCCEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDAL-------TGMDIV  118 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~t~d~~~al-------~~aDiV  118 (305)
                      +++.|+||+|.+|..++..|++.|.  +|+++|+++... ...++....  .++..+ ...+.++.+       ...|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~-d~~~v~~~~~~~~~~~g~iD~l   76 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETY--PQLKPM-SEQEPAELIEAVTSAYGQVDVL   76 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHC--TTSEEC-CCCSHHHHHHHHHHHHSCCCEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC--CcEEEE-CHHHHHHHHHHHHHHhCCCCEE
Confidence            4689999999999999999999998  899999875211 122232211  111111 122333333       478999


Q ss_pred             EEcCCCC-CCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          119 IIPAGVP-RKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       119 Ii~ag~~-~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      |.+||.. ....   .+   ....+..|+..    .+.+.+.+.+.. .+.|+++|.
T Consensus        77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  132 (254)
T 1zmt_A           77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITS  132 (254)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence            9999975 2211   11   23345556554    444555555444 355666654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.30  E-value=0.0015  Score=52.50  Aligned_cols=98  Identities=9%  Similarity=0.049  Sum_probs=59.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCC---HHH-HhCCCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LED-ALTGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~~-al~~aDiVIi~  121 (305)
                      ..+|.|+|+ |.+|..++..|...|+  +++++|.++..  ...+....  ..+. ....++   +++ .+.++|+||++
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~~~~~g--~~~i-~gd~~~~~~l~~a~i~~ad~vi~~   78 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDI--PLVVIETSRTR--VDELRERG--VRAV-LGNAANEEIMQLAHLECAKWLILT   78 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTT--CEEE-ESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHHcC--CCEE-ECCCCCHHHHHhcCcccCCEEEEE
Confidence            458999999 9999999999999998  99999997621  11222211  1111 111122   111 25789999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec-CCC
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPV  166 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t-NPv  166 (305)
                      .+..           ..|..    ++..+++..|+..++.-. +|-
T Consensus        79 ~~~~-----------~~n~~----~~~~a~~~~~~~~iiar~~~~~  109 (140)
T 3fwz_A           79 IPNG-----------YEAGE----IVASARAKNPDIEIIARAHYDD  109 (140)
T ss_dssp             CSCH-----------HHHHH----HHHHHHHHCSSSEEEEEESSHH
T ss_pred             CCCh-----------HHHHH----HHHHHHHHCCCCeEEEEECCHH
Confidence            6421           22333    344566677877665544 443

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.29  E-value=0.0014  Score=58.48  Aligned_cols=115  Identities=17%  Similarity=0.170  Sum_probs=70.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.     .++..+.. -+|   .++++       
T Consensus         6 ~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (263)
T 2a4k_A            6 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALE-----AEAIAVVADVSDPKAVEAVFAEALEEF   78 (263)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCC-----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  9999998752  11112221     11222111 112   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 021932          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVN  167 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd  167 (305)
                      ...|++|.+||.....   ..+   ....+..|+.....+.+.+.++- ..+.|+++|....
T Consensus        79 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  140 (263)
T 2a4k_A           79 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG  140 (263)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchh
Confidence            3579999999975321   111   23456778877777777766653 1456777765443

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.29  E-value=0.001  Score=59.44  Aligned_cols=115  Identities=13%  Similarity=0.115  Sum_probs=66.6

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chh----hhhhhcccCCceEEEEecCCCHHHHhCCC
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGV----TADISHMDTNAVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~----~~DL~~~~~~~~v~~~~~t~d~~~al~~a  115 (305)
                      .+.+.++|.|+||+|.+|..++..|++.|.  +|+++|+++.  .+.    ..|+.+..   .+...  -....+.+...
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~Dv~~~~---~v~~~--~~~~~~~~g~i   82 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGA--KVVSVSLDEKSDVNVSDHFKIDVTNEE---EVKEA--VEKTTKKYGRI   82 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCC--CTTSSEEEECCTTCHH---HHHHH--HHHHHHHHSCC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhccCceeEEEecCCCHH---HHHHH--HHHHHHHcCCC
Confidence            344456899999999999999999999998  8999998762  111    11222211   00000  00112334589


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          116 DIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       116 DiVIi~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                      |++|.+||......   .+   ....+..|+...    +.+.+.+.+.. .+.|+++|.
T Consensus        83 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  140 (269)
T 3vtz_A           83 DILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG-HGSIINIAS  140 (269)
T ss_dssp             CEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECc
Confidence            99999999753221   11   123455665544    44444455444 455666553

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.29  E-value=0.00052  Score=61.60  Aligned_cols=116  Identities=11%  Similarity=0.149  Sum_probs=68.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHh-----
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-----  112 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-----  112 (305)
                      .+.+++.|+||+|.+|..++..|+..|.  +|++.|+++  +.....++....  .++..+.. -+|   .++.+     
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~   99 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDE   99 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            3445899999999999999999999998  899999876  222233343321  22222211 112   22223     


Q ss_pred             --CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          113 --TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 --~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                        ...|++|.+||......   .+   ....+..|+...    +.+.+.+.+.. .+.|++++.
T Consensus       100 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iV~isS  162 (271)
T 4ibo_A          100 QGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG-YGKIVNIGS  162 (271)
T ss_dssp             HTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence              27899999999753221   12   223455665544    44455555444 355666653

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.29  E-value=0.0013  Score=58.12  Aligned_cols=114  Identities=12%  Similarity=0.088  Sum_probs=68.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHhC-----
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDALT-----  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~-----  113 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++  +.....++...  ..++..+.. -+|   .++.++     
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAA--GGRIVARSLDARNEDEVTAFLNAADAH   81 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECcCCCHHHHHHHHHHHHhh
Confidence            345899999999999999999999998  899999976  22223334332  123333211 122   222333     


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932          114 -GMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       114 -~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t  163 (305)
                       ..|++|.+||......   .+   -...+..|+.    +.+.+.+.+.+.. .+.|+++|
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is  141 (252)
T 3h7a_A           82 APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTG  141 (252)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred             CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEC
Confidence             6799999999754211   11   2234555544    4455555566554 35555554

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.29  E-value=0.0036  Score=56.05  Aligned_cols=116  Identities=20%  Similarity=0.200  Sum_probs=68.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--------------chh----hhhhhcccCCceEEEEec-C
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--------------PGV----TADISHMDTNAVVRGFLG-Q  105 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--------------~g~----~~DL~~~~~~~~v~~~~~-t  105 (305)
                      +.+++.|+||+|.+|..++..|++.|.  .|+++|+++.              ...    ..++...  ..++..+.. -
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv   85 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH--NRRIVTAEVDV   85 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT--TCCEEEEECCT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhc--CCceEEEEcCC
Confidence            345899999999999999999999998  9999998620              111    1112111  223333211 1


Q ss_pred             CC---HHHHh-------CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          106 QQ---LEDAL-------TGMDIVIIPAGVPRKPG----MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       106 ~d---~~~al-------~~aDiVIi~ag~~~~~g----~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +|   .++.+       ...|++|.+||......    .+   ....+..|+.    +.+.+.+.+.+....+.|+++|.
T Consensus        86 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  165 (286)
T 3uve_A           86 RDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSS  165 (286)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence            22   22222       37899999999753322    12   2234555654    44555555665555667777764

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.28  E-value=0.0041  Score=55.61  Aligned_cols=117  Identities=10%  Similarity=0.015  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHH-------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-------  111 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++.  ......++.... ..++..+.. -+|   .++.       
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~  102 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPPAVMAAVDQALKE  102 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            445899999999999999999999998  999999875  222223332211 122222211 112   2222       


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                      +...|++|.+||......   .+   ....+..|+.....+.+.+...   ...+.|+++|.
T Consensus       103 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS  164 (277)
T 4fc7_A          103 FGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITA  164 (277)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECC
T ss_pred             cCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECc
Confidence            237899999998643211   11   2335566766555555554322   12456666653

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.28  E-value=0.0018  Score=56.16  Aligned_cols=114  Identities=18%  Similarity=0.153  Sum_probs=64.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEE-EecCCCHHHHhCCC----CEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRG-FLGQQQLEDALTGM----DIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~a----DiVI  119 (305)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++...  ...+.. .....+.++.++..    |++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~D~~~~~~v~~~~~~~~~~~d~lv   77 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLSTVTNCLSNN--VGYRARDLASHQEVEQLFEQLDSIPSTVV   77 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHTCSSC--CCEEECCTTCHHHHHHHHHSCSSCCSEEE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhc--cCeEeecCCCHHHHHHHHHHHhhcCCEEE
Confidence            3689999999999999999999997  8999998762  1112222110  001110 00011233334333    8999


Q ss_pred             EcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhCC--CcEEEEecC
Q 021932          120 IPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCCP--KAIVNLISN  164 (305)
Q Consensus       120 i~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~~p--~aiviv~tN  164 (305)
                      .+||......   .+   ....+..|+.....+.+.+.+.-.  .+.+++++.
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS  130 (230)
T 3guy_A           78 HSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMS  130 (230)
T ss_dssp             ECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECC
T ss_pred             EeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEee
Confidence            9998653221   11   233566677666666665554421  224555543

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.28  E-value=0.0033  Score=56.51  Aligned_cols=115  Identities=17%  Similarity=0.199  Sum_probs=66.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEec-CCC---HHHHh------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al------  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++.   ......++.... ...+..+.. -+|   .++.+      
T Consensus        25 ~k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~  101 (281)
T 3v2h_A           25 TKTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVADR  101 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999998  999999854   222222333221 123332211 112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                       ...|++|.+||......   .+   ....+..|+...    +.+.+.+.+.. .+.|+++|.
T Consensus       102 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  163 (281)
T 3v2h_A          102 FGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG-WGRIINIAS  163 (281)
T ss_dssp             TSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECC
Confidence             37899999999753221   12   223455665544    44444455544 355555553

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.28  E-value=0.00044  Score=62.43  Aligned_cols=64  Identities=20%  Similarity=0.279  Sum_probs=47.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |||+|||+ |.+|..++..|...|+  +|.++|+++...  ..+...    .++.   .++++++++++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~----g~~~---~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKHGY--PLIIYDVFPDAC--KEFQDA----GEQV---VSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHTTC--CEEEECSSTHHH--HHHHTT----TCEE---CSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEec-cHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHc----CCee---cCCHHHHHhcCCEEEEeC
Confidence            58999998 9999999999999888  899999876211  122221    1222   246678889999999986

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.27  E-value=0.0015  Score=58.16  Aligned_cols=117  Identities=17%  Similarity=0.156  Sum_probs=72.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEec-CCC---HHHHh----
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL----  112 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al----  112 (305)
                      .+.+++.|+||+|.+|..++..|+..|.  +|++.|.+.   ......++...  ..++..+.. -+|   .++.+    
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~   91 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKAL--GSDAIAIKADIRQVPEIVKLFDQAV   91 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            3446899999999999999999999998  899988754   12222333322  122332211 122   22222    


Q ss_pred             ---CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          113 ---TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       113 ---~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                         ...|++|.+||......   .+   ....+..|+.....+.+.+.++- ..+.|++++.
T Consensus        92 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           92 AHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             HHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence               37899999999753221   12   23456778777777777776664 3456666654

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.26  E-value=0.0059  Score=53.73  Aligned_cols=116  Identities=19%  Similarity=0.179  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cC--CC---HHHHh----
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQ--QQ---LEDAL----  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t--~d---~~~al----  112 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++  +...+.++.... ...+..+. .-  +|   .++.+    
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEET-GRQPQWFILDLLTCTSENCQQLAQRIA   87 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCCceEEEEecccCCHHHHHHHHHHHH
Confidence            445899999999999999999999998  899999876  222223333221 11111111 01  12   12222    


Q ss_pred             ---CCCCEEEEcCCCCCC--C--CCch---hhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecC
Q 021932          113 ---TGMDIVIIPAGVPRK--P--GMTR---DDLFNINAGIVKTLC----EGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ---~~aDiVIi~ag~~~~--~--g~~r---~d~~~~N~~i~~~i~----~~I~~~~p~aiviv~tN  164 (305)
                         ...|++|.+||....  +  ..+.   ...+..|+.....+.    +.+.+.. .+.|+++|.
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS  152 (252)
T 3f1l_A           88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSD-AGSLVFTSS  152 (252)
T ss_dssp             HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECC
T ss_pred             HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC-CCEEEEECC
Confidence               378999999996321  1  1222   234566665444444    4444433 455665553

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.26  E-value=0.0016  Score=57.35  Aligned_cols=113  Identities=17%  Similarity=0.172  Sum_probs=66.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCCH---HHH-------h
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---EDA-------L  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d~---~~a-------l  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.  +.....++...  ..++..+.. -+|.   +++       +
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            7 GKVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAA--GAKVHVLELDVADRQGVDAAVASTVEAL   82 (247)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  899999875  22222233321  122332211 1222   222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                      .+.|++|.+||.....   ..+   ....+..|+...    +.+.+.+.+..  +.|+++|.
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  142 (247)
T 2jah_A           83 GGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSS  142 (247)
T ss_dssp             SCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEcc
Confidence            3799999999965321   112   223455665544    44444444444  56666654

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.25  E-value=0.00076  Score=62.91  Aligned_cols=64  Identities=16%  Similarity=0.264  Sum_probs=48.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ....+||+|||. |.+|+.+|..+...|.  +|..+|++.....       .    ...   ..++++.+++||+|+++.
T Consensus       161 ~l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~dr~~~~~~-------g----~~~---~~~l~ell~~aDvVil~v  223 (333)
T 3ba1_A          161 KFSGKRVGIIGL-GRIGLAVAERAEAFDC--PISYFSRSKKPNT-------N----YTY---YGSVVELASNSDILVVAC  223 (333)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSCCTTC-------C----SEE---ESCHHHHHHTCSEEEECS
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCchhcc-------C----cee---cCCHHHHHhcCCEEEEec
Confidence            344568999999 9999999999998887  8999998652110       1    111   135778899999999986


Q ss_pred             C
Q 021932          123 G  123 (305)
Q Consensus       123 g  123 (305)
                      .
T Consensus       224 P  224 (333)
T 3ba1_A          224 P  224 (333)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.25  E-value=0.00067  Score=61.04  Aligned_cols=116  Identities=16%  Similarity=0.141  Sum_probs=66.7

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHH----
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA----  111 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a----  111 (305)
                      ++.+.+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.     .++..+. .-+|   .++.    
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~   95 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIG-----SKAFGVRVDVSSAKDAESMVEKT   95 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHH
Confidence            344455899999999999999999999998  9999998752  11111111     1111111 0112   2222    


Q ss_pred             ---hCCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecC
Q 021932          112 ---LTGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISN  164 (305)
Q Consensus       112 ---l~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tN  164 (305)
                         +...|++|.+||.....   ..+   ....+..|+.....+.+.+.+.   ...+.|+++|.
T Consensus        96 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS  160 (277)
T 4dqx_A           96 TAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTS  160 (277)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECC
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECc
Confidence               23789999999964321   111   2334556766544444444332   22456666653

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.24  E-value=0.00089  Score=59.09  Aligned_cols=111  Identities=17%  Similarity=0.172  Sum_probs=66.6

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEE-ecCCCHH---HHhCCCCEE
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGF-LGQQQLE---DALTGMDIV  118 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~-~~t~d~~---~al~~aDiV  118 (305)
                      ..+.++|.|+||+|.+|..++..|+..|.  +|+++|+++.  ...++.      .+..+ .-..+.+   +.+.+.|++
T Consensus        16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~--~~~~~~------~~~~~~D~~~~~~~~~~~~~~iD~l   85 (249)
T 1o5i_A           16 GIRDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEE--LLKRSG------HRYVVCDLRKDLDLLFEKVKEVDIL   85 (249)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHTC------SEEEECCTTTCHHHHHHHSCCCSEE
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHH--HHHhhC------CeEEEeeHHHHHHHHHHHhcCCCEE
Confidence            34456899999999999999999999998  8999998751  111111      11111 0011232   233489999


Q ss_pred             EEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          119 IIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       119 Ii~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      |.+||......   .+   ....+..|+.    ..+.+.+.+.+.. .+.|+++|.
T Consensus        86 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (249)
T 1o5i_A           86 VLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITS  140 (249)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcc
Confidence            99999653211   11   2234445543    3556666666654 345555553

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.23  E-value=0.0014  Score=59.51  Aligned_cols=116  Identities=17%  Similarity=0.237  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-CceEEEEec-CCC---HHHHh-----
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLG-QQQ---LEDAL-----  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~-t~d---~~~al-----  112 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++  +.....++..... ..++..+.. -+|   .++++     
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  102 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA  102 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999998  899999875  2222223322110 002332211 122   22223     


Q ss_pred             --CCCCEEEEcCCCCCCCC-----Cc---hhhHHHhhHHHHHH----HHHHHHHhCCCcEEEEecC
Q 021932          113 --TGMDIVIIPAGVPRKPG-----MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 --~~aDiVIi~ag~~~~~g-----~~---r~d~~~~N~~i~~~----i~~~I~~~~p~aiviv~tN  164 (305)
                        ...|++|.+||......     .+   ....+..|+.....    +.+.+.+..  +.|+++|.
T Consensus       103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--g~IV~isS  166 (297)
T 1xhl_A          103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSS  166 (297)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CEEEEEcC
Confidence              37899999999643211     11   22345556554444    444444333  56666653

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.23  E-value=0.0021  Score=56.31  Aligned_cols=111  Identities=15%  Similarity=0.167  Sum_probs=64.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe-cCCCH---H---HHhCCCCEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQL---E---DALTGMDIV  118 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~t~d~---~---~al~~aDiV  118 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++...  .++...   .++..+. .-+|.   +   +.+...|++
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~--~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~id~l   78 (246)
T 2ag5_A            6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESKL--QELEKY---PGIQTRVLDVTKKKQIDQFANEVERLDVL   78 (246)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--GGGGGS---TTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHhc---cCceEEEeeCCCHHHHHHHHHHhCCCCEE
Confidence            35899999999999999999999998  999999875211  111111   0122211 11222   1   224578999


Q ss_pred             EEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          119 IIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       119 Ii~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                      |.+||......   .+   ....+..|+...    +.+.+.+.+.. .+.|+++|.
T Consensus        79 v~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS  133 (246)
T 2ag5_A           79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSS  133 (246)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence            99999653211   11   223455565544    44444444443 455666654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.23  E-value=0.0024  Score=57.20  Aligned_cols=116  Identities=16%  Similarity=0.202  Sum_probs=68.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---------------CchhhhhhhcccCCceEEEEe-cCCC-
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------TPGVTADISHMDTNAVVRGFL-GQQQ-  107 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---------------~~g~~~DL~~~~~~~~v~~~~-~t~d-  107 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++.               +.....++...  ..++..+. .-+| 
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~   89 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQ--GRKALTRVLDVRDD   89 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT--TCCEEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEEcCCCCH
Confidence            345899999999999999999999998  999999842               11111222221  12233221 1122 


Q ss_pred             --HHHH-------hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          108 --LEDA-------LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       108 --~~~a-------l~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                        .++.       +...|++|.+||......   .+   ....+..|+.    +.+.+.+.+.+....+.|+++|.
T Consensus        90 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  165 (280)
T 3pgx_A           90 AALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSS  165 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence              2222       237899999999753211   12   2234555654    45555566666655666777664

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.22  E-value=0.0017  Score=57.41  Aligned_cols=114  Identities=16%  Similarity=0.123  Sum_probs=66.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-h--hhhhhhcccCCceEEEEec-CCC---HHHHh-------
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-G--VTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g--~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------  112 (305)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|+++.. .  ...++.... ..++..+.. -+|   .++.+       
T Consensus         5 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~   81 (260)
T 1x1t_A            5 KVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhcc-CCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            4899999999999999999999998  89999987522 1  112222110 112222211 122   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ...|++|.+||......   .+   ....+..|+.    +.+.+.+.+.+.. .+.|+++|.
T Consensus        82 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  142 (260)
T 1x1t_A           82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIAS  142 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECc
Confidence            37999999999753211   11   2334556665    4555555555544 355666653

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.22  E-value=0.0019  Score=56.99  Aligned_cols=116  Identities=16%  Similarity=0.118  Sum_probs=67.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC-ceEEEEe-cCCCH---HHH-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN-AVVRGFL-GQQQL---EDA-------  111 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~-~t~d~---~~a-------  111 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++  +.....++...... ..+..+. .-+|.   ++.       
T Consensus         7 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            7 KGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  999999876  22222333221101 2222211 11221   122       


Q ss_pred             hCCCCEEEEcCCCCCCC--CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          112 LTGMDIVIIPAGVPRKP--GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~--g~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +...|++|.+||.....  ..+   ....+..|+.    +.+.+.+.+.+.. .+.|++++.
T Consensus        85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  145 (250)
T 3nyw_A           85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQK-NGYIFNVAS  145 (250)
T ss_dssp             HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEcc
Confidence            23789999999974322  122   1234555654    4444555555444 456666654

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=97.21  E-value=0.0017  Score=57.38  Aligned_cols=115  Identities=10%  Similarity=0.021  Sum_probs=65.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHHh------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al------  112 (305)
                      +++++.|+||+|.+|..++..|+..|.  +|++++.+..  .....++.... ..++..+.. -+|   .++++      
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   82 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGY--SVTVTYHSDTTAMETMKETYKDV-EERLQFVQADVTKKEDLHKIVEEAMSH   82 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHTGGG-GGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  8999987651  11111221111 123333211 122   22233      


Q ss_pred             -CCCCEEEEcCCC--CCC-C--CCc---hhhHHHhhHHHHHH----HHHHHHHhCCCcEEEEec
Q 021932          113 -TGMDIVIIPAGV--PRK-P--GMT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 -~~aDiVIi~ag~--~~~-~--g~~---r~d~~~~N~~i~~~----i~~~I~~~~p~aiviv~t  163 (305)
                       ...|++|.+||.  ... +  ..+   -.+.+..|+.....    +.+.+.+.. .+.|+++|
T Consensus        83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~is  145 (264)
T 3i4f_A           83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN-FGRIINYG  145 (264)
T ss_dssp             HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CCeEEEEe
Confidence             388999999993  211 1  111   13345566554444    444445554 35555554

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.21  E-value=0.0015  Score=58.66  Aligned_cols=78  Identities=18%  Similarity=0.135  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCCH----H-------H
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQL----E-------D  110 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d~----~-------~  110 (305)
                      +.++|.|+||+|.+|..++..|+..|.  .|++.|++..  .....++.... ..++..+.. -+|.    +       +
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~   87 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKT   87 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHH
Confidence            345799999999999999999999998  9999999762  22233444322 223333211 1222    1       1


Q ss_pred             HhCCCCEEEEcCCCC
Q 021932          111 ALTGMDIVIIPAGVP  125 (305)
Q Consensus       111 al~~aDiVIi~ag~~  125 (305)
                      .+...|++|.+||..
T Consensus        88 ~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           88 HFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHSSCCEEEECCCCC
T ss_pred             hCCCCCEEEECCccc
Confidence            234899999999975

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.21  E-value=0.0015  Score=57.81  Aligned_cols=112  Identities=17%  Similarity=0.207  Sum_probs=70.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH----------HHHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL----------EDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~----------~~al  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.     .++..+. .-+|.          .+.+
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999998  9999998752  11111221     1122111 11122          1223


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                      ...|++|.+||......   .+   ....+..|+.....+.+.+.++- ..+.|+++|.
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  139 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS  139 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence            47899999999754221   11   23456778777777777776653 3456776654

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.20  E-value=0.0035  Score=54.75  Aligned_cols=111  Identities=13%  Similarity=0.086  Sum_probs=64.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHH-------hC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------LT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-------l~  113 (305)
                      +++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++..     .+..+.. -+|   .++.       +.
T Consensus         4 k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~g   76 (235)
T 3l6e_A            4 GHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGN-----AVIGIVADLAHHEDVDVAFAAAVEWGG   76 (235)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTSHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-----CceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999998  8999999762  222222211     1222111 112   2222       23


Q ss_pred             CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~~--p~aiviv~tN  164 (305)
                      ..|++|.+||.....   ..+   ....+..|+.....+.+.+...-  ..+.|++++.
T Consensus        77 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS  135 (235)
T 3l6e_A           77 LPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLS  135 (235)
T ss_dssp             SCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             CCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            679999999974321   112   23456667766655555544331  2235555543

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.20  E-value=0.0012  Score=58.26  Aligned_cols=119  Identities=14%  Similarity=0.073  Sum_probs=71.0

Q ss_pred             CCCCCCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEe-cCCC---HHHHh--
Q 021932           42 GGSPGFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL-GQQQ---LEDAL--  112 (305)
Q Consensus        42 ~~~~~~KI~IIGaa--G~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al--  112 (305)
                      .+.+.++|.|+||+  |.+|..++..|+..|.  +|+++|+++ ......++....  ..+..+. .-+|   .++.+  
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~   85 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEF--GSELVFPCDVADDAQIDALFAS   85 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHT--TCCCEEECCTTCHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHc--CCcEEEECCCCCHHHHHHHHHH
Confidence            44556799999998  8999999999999998  999999875 222222222211  1111111 1112   22222  


Q ss_pred             -----CCCCEEEEcCCCCCC-----C--C-Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          113 -----TGMDIVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       113 -----~~aDiVIi~ag~~~~-----~--g-~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                           ...|++|.+||....     +  . .+   ....+..|+.....+.+.+.+.- +.+.|+++|.
T Consensus        86 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  154 (271)
T 3ek2_A           86 LKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY  154 (271)
T ss_dssp             HHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             HHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence                 367999999996532     1  1 22   23456667777777777766553 3455666653

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.20  E-value=0.002  Score=57.55  Aligned_cols=115  Identities=18%  Similarity=0.211  Sum_probs=66.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEec-CCC---HHHHh----
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL----  112 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al----  112 (305)
                      .+.+++.|+||+|.+|..++..|+..|.  +|++.|...   ......++...  ..++..+.. -+|   .++.+    
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~v~~~~~~~~  101 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAA--GGEAFAVKADVSQESEVEALFAAVI  101 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHH
Confidence            3445889999999999999999999998  899998844   12222233322  122222211 122   22222    


Q ss_pred             ---CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932          113 ---TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ---~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t  163 (305)
                         ...|++|.+||......   .+   ....+..|+..    .+.+.+.+.+.. .+.|+++|
T Consensus       102 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~is  164 (269)
T 4dmm_A          102 ERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR-SGRIINIA  164 (269)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEC
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEC
Confidence               37899999999753221   11   22345556554    444444455444 35555554

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.20  E-value=0.00096  Score=59.73  Aligned_cols=113  Identities=14%  Similarity=0.173  Sum_probs=67.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---HHHH-------hC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a-------l~  113 (305)
                      +++.|+||+|.+|..++..|+..|.  +|++.|+++  +...+.++....  ..+..+. .-+|   .++.       +.
T Consensus         5 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            5 KVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999998  899999876  222233343321  2222221 1122   1122       24


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..|++|.+||......   .+   ....+..|+...    +.+.+.+.+.. .+.|+++|.
T Consensus        81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS  140 (264)
T 3tfo_A           81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQR-SGQIINIGS  140 (264)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CeEEEEEcC
Confidence            7899999999753221   11   223455565444    45555555444 455666653

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.19  E-value=0.0016  Score=59.06  Aligned_cols=117  Identities=9%  Similarity=0.042  Sum_probs=70.5

Q ss_pred             CCCCEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEe-cCCC---HHHH-----
Q 021932           44 SPGFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-----  111 (305)
Q Consensus        44 ~~~~KI~IIGaaG~--VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a-----  111 (305)
                      .+.+++.|+||+|.  +|..++..|+..|.  +|++.|+++. .....++....  ..+..+. .-+|   .++.     
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~  104 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEEL--GAFVAGHCDVADAASIDAVFETLE  104 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHH--TCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc--CCceEEECCCCCHHHHHHHHHHHH
Confidence            34468999999888  99999999999998  8999998751 11222222211  1122211 1112   2222     


Q ss_pred             --hCCCCEEEEcCCCCC-----CC--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          112 --LTGMDIVIIPAGVPR-----KP--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       112 --l~~aDiVIi~ag~~~-----~~--g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                        +...|++|.+||...     .+  ..+   ....+..|+.....+.+.+.++- ..+.|+++|.
T Consensus       105 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          105 KKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             HHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             HhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence              237899999999753     11  111   23456677777777777666554 3566766654

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=97.19  E-value=0.0011  Score=59.12  Aligned_cols=110  Identities=20%  Similarity=0.172  Sum_probs=63.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh-------hhhhhcccCCceEEEEecCCCHHHHhCCCCEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-------TADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~-------~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiV  118 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++.....       ..|+.+...   +...  -....+.+...|++
T Consensus        28 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~---v~~~--~~~~~~~~g~iD~l  100 (260)
T 3un1_A           28 QKVVVITGASQGIGAGLVRAYRDRNY--RVVATSRSIKPSADPDIHTVAGDISKPET---ADRI--VREGIERFGRIDSL  100 (260)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCCCCSSTTEEEEESCTTSHHH---HHHH--HHHHHHHHSCCCEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhhcccCceEEEEccCCCHHH---HHHH--HHHHHHHCCCCCEE
Confidence            45899999999999999999999998  9999998752111       112222110   0000  00112233489999


Q ss_pred             EEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHH----HHHHHhCCCcEEEEec
Q 021932          119 IIPAGVPRKPG---MT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLIS  163 (305)
Q Consensus       119 Ii~ag~~~~~g---~~---r~d~~~~N~~i~~~i~----~~I~~~~p~aiviv~t  163 (305)
                      |.+||......   .+   ....+..|+.....+.    +.+.+.. .+.|++++
T Consensus       101 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~is  154 (260)
T 3un1_A          101 VNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQG-SGHIVSIT  154 (260)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEe
Confidence            99999753221   11   2334556665544444    4445444 45555554

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.18  E-value=0.001  Score=59.01  Aligned_cols=115  Identities=13%  Similarity=0.101  Sum_probs=70.3

Q ss_pred             CEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCC---HHHHhC-------
Q 021932           47 FKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQ---LEDALT-------  113 (305)
Q Consensus        47 ~KI~IIGaa--G~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d---~~~al~-------  113 (305)
                      ++|.|+||+  |.+|..++..|+..|.  +|+++|+++ ......++............ .-+|   .++.++       
T Consensus        10 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~-D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A           10 KRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQC-DVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEEC-CTTCHHHHHHHHHHHHTTCS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHHhcCCcEEEEc-cCCCHHHHHHHHHHHHHHcC
Confidence            479999998  8999999999999998  899999876 22222233221101111111 1122   222232       


Q ss_pred             CCCEEEEcCCCCCC-----C--C-Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~-----~--g-~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                      ..|++|.+||....     +  . .+   ....+..|+.....+.+.+.+.- +.+.|+++|.
T Consensus        87 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  149 (265)
T 1qsg_A           87 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY  149 (265)
T ss_dssp             SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            67999999997532     1  0 11   23456778888888888777653 2356666653

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.18  E-value=0.0021  Score=57.66  Aligned_cols=35  Identities=29%  Similarity=0.306  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus        28 ~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~   62 (286)
T 1xu9_A           28 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSK   62 (286)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            45899999999999999999999998  899999875

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.18  E-value=0.0018  Score=57.94  Aligned_cols=115  Identities=17%  Similarity=0.189  Sum_probs=66.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC----------c----hhhhhhhcccCCceEEEEec-CCC--
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----------P----GVTADISHMDTNAVVRGFLG-QQQ--  107 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~----------~----g~~~DL~~~~~~~~v~~~~~-t~d--  107 (305)
                      +.+++.|+||+|.+|..++..|++.|.  +|+++|+++.          .    ....++...  ..++..+.. -+|  
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~   84 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA--DIAICDRCENSDVVGYPLATADDLAETVALVEKT--GRRCISAKVDVKDRA   84 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCccccccccccccHHHHHHHHHHHHhc--CCeEEEEeCCCCCHH
Confidence            345899999999999999999999998  8999998631          0    111112211  122332211 122  


Q ss_pred             -HHHHh-------CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHH----HHHhCCCcEEEEecC
Q 021932          108 -LEDAL-------TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEG----IAKCCPKAIVNLISN  164 (305)
Q Consensus       108 -~~~al-------~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~----I~~~~p~aiviv~tN  164 (305)
                       .++.+       ...|++|.+||.....   ..+   ..+.+..|+.....+.+.    +.+.. .+.|+++|.
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  158 (281)
T 3s55_A           85 ALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRN-YGRIVTVSS  158 (281)
T ss_dssp             HHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECC
Confidence             22222       3799999999975321   122   233455666544444444    54443 456666653

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.17  E-value=0.0029  Score=57.35  Aligned_cols=115  Identities=17%  Similarity=0.212  Sum_probs=68.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--------------chhhhhhhcccCCceEEEEec-CCC---
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--------------PGVTADISHMDTNAVVRGFLG-QQQ---  107 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--------------~g~~~DL~~~~~~~~v~~~~~-t~d---  107 (305)
                      .+.+.|+||+|.+|..++..|+..|.  .|+++|+++.              .....++...  ..++..+.. -+|   
T Consensus        28 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~  103 (299)
T 3t7c_A           28 GKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL--GRRIIASQVDVRDFDA  103 (299)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhc--CCceEEEECCCCCHHH
Confidence            45899999999999999999999998  9999998620              1111122221  122332211 122   


Q ss_pred             HHHH-------hCCCCEEEEcCCCCCCCC----Cch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          108 LEDA-------LTGMDIVIIPAGVPRKPG----MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       108 ~~~a-------l~~aDiVIi~ag~~~~~g----~~r---~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      .++.       +...|++|.+||......    .+.   ...+..|+.    +.+.+.+.+.+....+.|+++|.
T Consensus       104 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS  178 (299)
T 3t7c_A          104 MQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSS  178 (299)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            2222       237999999999643221    122   334556654    44445555555455677777764

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.16  E-value=0.0011  Score=59.50  Aligned_cols=115  Identities=13%  Similarity=0.165  Sum_probs=65.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-CceEEEEec-CCC---HHHHh------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLG-QQQ---LEDAL------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~-t~d---~~~al------  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++  +.....++..... ..++..+.. -+|   .++++      
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            6 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            35899999999999999999999998  999999875  2222223322110 012332211 122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC-------Cc---hhhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecC
Q 021932          113 -TGMDIVIIPAGVPRKPG-------MT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~g-------~~---r~d~~~~N~~i~~~i~----~~I~~~~p~aiviv~tN  164 (305)
                       ...|++|.+||......       .+   ....+..|+.....+.    +.+.+..  +.|+++|.
T Consensus        84 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  148 (280)
T 1xkq_A           84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSS  148 (280)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC--CcEEEecC
Confidence             37899999999653211       11   2234555655444444    4443333  55666653

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.16  E-value=0.0031  Score=56.69  Aligned_cols=111  Identities=19%  Similarity=0.147  Sum_probs=65.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCCH---H-------HHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQL---E-------DAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d~---~-------~al  112 (305)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|+++.  .....++.     ..+..+. .-+|.   +       +.+
T Consensus        29 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (277)
T 3gvc_A           29 GKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIG-----CGAAACRVDVSDEQQIIAMVDACVAAF  101 (277)
T ss_dssp             TCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-----SSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CcceEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  9999998752  21222221     1111111 11121   1       223


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~----~i~~~I~~~~p~aiviv~tN  164 (305)
                      ...|++|.+||.....   ..+   ....+..|+....    .+.+.+.+. ..+.|+++|.
T Consensus       102 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS  162 (277)
T 3gvc_A          102 GGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER-GGGAIVNLSS  162 (277)
T ss_dssp             SSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence            4789999999974321   112   2345566766544    444444433 3566666654

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=97.15  E-value=0.00039  Score=62.26  Aligned_cols=112  Identities=20%  Similarity=0.206  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch-----hhhhhhcccCCceEEEEecCCCHHHHhCCCCEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-----VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g-----~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|++....     ...|+.+...   +...  .....+.+...|++|
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~Dv~~~~~---~~~~--~~~~~~~~g~iD~lv   99 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGA--RVAVADRAVAGIAADLHLPGDLREAAY---ADGL--PGAVAAGLGRLDIVV   99 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEECSSCCTTSCCSEECCCCTTSHHH---HHHH--HHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHhhhccCcCCCCHHH---HHHH--HHHHHHhcCCCCEEE
Confidence            345899999999999999999999998  999999875211     1122222110   0000  001223456899999


Q ss_pred             EcCCCCCCCC---Cc---hhhHHHhhHHHHHH----HHHHHHHhCCCcEEEEecC
Q 021932          120 IPAGVPRKPG---MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       120 i~ag~~~~~g---~~---r~d~~~~N~~i~~~----i~~~I~~~~p~aiviv~tN  164 (305)
                      .+||......   .+   ....+..|+.....    +.+.+.+.. .+.|+++|.
T Consensus       100 nnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS  153 (266)
T 3uxy_A          100 NNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG-GGAIVNVAS  153 (266)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECC
Confidence            9999753211   11   23345566554444    444445544 456666654

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.15  E-value=0.0039  Score=54.97  Aligned_cols=114  Identities=14%  Similarity=0.178  Sum_probs=66.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc--h--hhhhhhcccCCceEEEEec-CCC---HHHHh------
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--VTADISHMDTNAVVRGFLG-QQQ---LEDAL------  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~--g--~~~DL~~~~~~~~v~~~~~-t~d---~~~al------  112 (305)
                      +++.|+||+|.+|..++..|++.|.  +|+++|++...  .  ...++...  ..++..+.. -+|   .++++      
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAA--DQKAVFVGLDVTDKANFDSAIDEAAEK   78 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4799999999999999999999998  89999986522  1  11223221  122332211 122   22223      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          113 -TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                       ...|++|.+||......   .+   ..+.+..|+..    .+.+.+.+.+....+.|+++|.
T Consensus        79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  141 (258)
T 3a28_C           79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAAS  141 (258)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECc
Confidence             27999999999653211   11   23345556554    4455555554454355666553

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=97.14  E-value=0.0027  Score=60.22  Aligned_cols=71  Identities=17%  Similarity=0.332  Sum_probs=46.9

Q ss_pred             CCEEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEeCCCCchhh-hhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVT-ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~-~L~~~~~-~~el~L~D~~~~~g~~-~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ++||+|+||+|+||.-+.. +|..+++ ..+++++.... .|.. .++...  ...+..   .++. +.++++|+||++.
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~v~~---~~~~-~~~~~vDvvf~a~   76 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSN-AGGKAPSFAKN--ETTLKD---ATSI-DDLKKCDVIITCQ   76 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSC-TTSBCCTTCCS--CCBCEE---TTCH-HHHHTCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechh-cCCCHHHcCCC--ceEEEe---CCCh-hHhcCCCEEEECC
Confidence            4699999999999999998 8887774 45888886542 3332 233211  111221   2233 5688999999987


Q ss_pred             C
Q 021932          123 G  123 (305)
Q Consensus       123 g  123 (305)
                      |
T Consensus        77 ~   77 (377)
T 3uw3_A           77 G   77 (377)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=97.13  E-value=0.0027  Score=60.07  Aligned_cols=70  Identities=17%  Similarity=0.340  Sum_probs=46.5

Q ss_pred             CEEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEeCCCCchhh-hhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVT-ADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~-~L~~~~~-~~el~L~D~~~~~g~~-~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +||+|+||+|++|.-+.. +|..+++ ..+++++.... .|.. .++...  ...+..   .++. +.++++|+||++.|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~~~~---~~~~-~~~~~~Dvvf~a~~   73 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD--AGMLHD---AFDI-ESLKQLDAVITCQG   73 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC--CCBCEE---TTCH-HHHTTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC--ceEEEe---cCCh-hHhccCCEEEECCC
Confidence            589999999999999998 8888774 45888886543 3332 233211  111221   2233 56899999999875

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.13  E-value=0.00035  Score=65.59  Aligned_cols=74  Identities=22%  Similarity=0.240  Sum_probs=45.6

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEE
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi  120 (305)
                      +..++|||.|+|| |+||+.++..|.. ..  +|.+.|++.....  .+.+.  ...+.. ......+.+.++++|+||.
T Consensus        12 ~~g~~mkilvlGa-G~vG~~~~~~L~~-~~--~v~~~~~~~~~~~--~~~~~--~~~~~~d~~d~~~l~~~~~~~DvVi~   83 (365)
T 3abi_A           12 IEGRHMKVLILGA-GNIGRAIAWDLKD-EF--DVYIGDVNNENLE--KVKEF--ATPLKVDASNFDKLVEVMKEFELVIG   83 (365)
T ss_dssp             ----CCEEEEECC-SHHHHHHHHHHTT-TS--EEEEEESCHHHHH--HHTTT--SEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccCCccEEEEECC-CHHHHHHHHHHhc-CC--CeEEEEcCHHHHH--HHhcc--CCcEEEecCCHHHHHHHHhCCCEEEE
Confidence            6777899999999 9999999988864 34  8999998652111  11111  111221 1111235677899999999


Q ss_pred             cCC
Q 021932          121 PAG  123 (305)
Q Consensus       121 ~ag  123 (305)
                      +++
T Consensus        84 ~~p   86 (365)
T 3abi_A           84 ALP   86 (365)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            875

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.13  E-value=0.0077  Score=53.72  Aligned_cols=122  Identities=16%  Similarity=0.154  Sum_probs=71.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc---------hhhhhhhcccCCceEEEEec-CCCH---HH
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTNAVVRGFLG-QQQL---ED  110 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~---------g~~~DL~~~~~~~~v~~~~~-t~d~---~~  110 (305)
                      .+.+++.|+||+|.+|..++..|+..|.  +|++.|++...         ....++...  ..++..+.. -+|.   ++
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~   79 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSAVANPKLPGTIHSAAAAVNAA--GGQGLALKCDIREEDQVRA   79 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCSCCTTSCCCHHHHHHHHHHH--TSEEEEEECCTTCHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccchhhhhhHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHH
Confidence            3445899999999999999999999998  89999987521         111122211  122332211 1222   12


Q ss_pred             H-------hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCCCcc
Q 021932          111 A-------LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNST  169 (305)
Q Consensus       111 a-------l~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tNPvd~l  169 (305)
                      .       +...|++|.+||......   .+   ....+..|+.....+.+.+...   ...+.|++++......
T Consensus        80 ~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~  154 (274)
T 3e03_A           80 AVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLN  154 (274)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCC
T ss_pred             HHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcC
Confidence            2       247899999999753221   11   2334556766555554444332   2356677776655443

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.12  E-value=0.0063  Score=54.98  Aligned_cols=116  Identities=20%  Similarity=0.158  Sum_probs=72.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC----chhhhhhhcccCCceEEEEec-CCCH---H-------
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTNAVVRGFLG-QQQL---E-------  109 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~----~g~~~DL~~~~~~~~v~~~~~-t~d~---~-------  109 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|++..    ......+...  ..++..+.. -+|.   +       
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~  123 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEEC--GRKAVLLPGDLSDESFARSLVHKAR  123 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHT--TCCEEECCCCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHc--CCcEEEEEecCCCHHHHHHHHHHHH
Confidence            446899999999999999999999998  8999998631    1111122221  122332211 1121   1       


Q ss_pred             HHhCCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          110 DALTGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       110 ~al~~aDiVIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                      +.+...|++|.+||.....+    .+   ....+..|+.....+.+.+.+.- ..+.|+++|.
T Consensus       124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS  186 (294)
T 3r3s_A          124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS  186 (294)
T ss_dssp             HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence            12347899999999743211    11   24467778888888888877665 3456666654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.11  E-value=0.0014  Score=56.56  Aligned_cols=70  Identities=19%  Similarity=0.243  Sum_probs=45.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCC---HHHH-hCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~~a-l~~aDiVIi~a  122 (305)
                      |||.|+|+ |.+|+.++..|...|+  +++++|.++..  ..++.......-+.+  ..++   ++++ +++||+||++.
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~l~~~~~~~~i~g--d~~~~~~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY--GVVIINKDREL--CEEFAKKLKATIIHG--DGSHKEILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHHSSSEEEES--CTTSHHHHHHHTCCTTCEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHHcCCeEEEc--CCCCHHHHHhcCcccCCEEEEec
Confidence            58999998 9999999999999998  99999987621  112221110111111  1122   3333 68999999986


Q ss_pred             C
Q 021932          123 G  123 (305)
Q Consensus       123 g  123 (305)
                      +
T Consensus        74 ~   74 (218)
T 3l4b_C           74 P   74 (218)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.11  E-value=0.0036  Score=55.89  Aligned_cols=115  Identities=23%  Similarity=0.259  Sum_probs=69.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---------------CchhhhhhhcccCCceEEEEe-cCCCH-
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------TPGVTADISHMDTNAVVRGFL-GQQQL-  108 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---------------~~g~~~DL~~~~~~~~v~~~~-~t~d~-  108 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.               +.....++...  ..++..+. .-+|. 
T Consensus        11 ~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~   86 (277)
T 3tsc_A           11 GRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA--NRRIVAAVVDTRDFD   86 (277)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCCHH
Confidence            45899999999999999999999998  999999841               11111122221  12233221 11222 


Q ss_pred             --HH-------HhCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          109 --ED-------ALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       109 --~~-------al~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                        ++       .+...|++|.+||......   .+   ....+..|+.    +.+.+.+.+.+....+.|+++|.
T Consensus        87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS  161 (277)
T 3tsc_A           87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISS  161 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence              12       2246899999999753321   12   1234555644    55566666776665677777764

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.10  E-value=0.0018  Score=57.41  Aligned_cols=115  Identities=15%  Similarity=0.126  Sum_probs=69.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHHh-----
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-----  112 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~-D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al-----  112 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|++. +.++.  .....++....  .++..+. .-+|   .++.+     
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAAD   82 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999998  88888 44431  12222333221  1222211 1122   22222     


Q ss_pred             --CCCCEEEEcCCCCC--CC--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          113 --TGMDIVIIPAGVPR--KP--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       113 --~~aDiVIi~ag~~~--~~--g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                        ...|++|.+||...  .+  ..+   ....+..|+.....+.+.+.+.- ..+.|+++|
T Consensus        83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  143 (259)
T 3edm_A           83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS  143 (259)
T ss_dssp             HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence              37899999998542  11  112   23456778887777777777654 245566665

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.08  E-value=0.0034  Score=56.88  Aligned_cols=118  Identities=10%  Similarity=0.030  Sum_probs=71.7

Q ss_pred             CCCCCEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEe-cCCC---HHHHh---
Q 021932           43 GSPGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL---  112 (305)
Q Consensus        43 ~~~~~KI~IIGaaG--~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al---  112 (305)
                      ..+.+++.|+||+|  .+|..++..|+..|.  +|++.|+++. .....++......  +..+. .-+|   .++.+   
T Consensus        27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~Dv~d~~~v~~~~~~~  102 (296)
T 3k31_A           27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLGV--KLTVPCDVSDAESVDNMFKVL  102 (296)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHTC--CEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCC--eEEEEcCCCCHHHHHHHHHHH
Confidence            34456899999976  999999999999998  8999998752 1112222211101  11111 1112   22222   


Q ss_pred             ----CCCCEEEEcCCCCCC-----C--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          113 ----TGMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       113 ----~~aDiVIi~ag~~~~-----~--g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                          ...|++|.+||....     +  ..+   ....+..|+.....+.+.+...- ..+.|+++|.
T Consensus       103 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS  169 (296)
T 3k31_A          103 AEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY  169 (296)
T ss_dssp             HHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence                378999999997531     1  112   23456778877777887777654 3466666653

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.08  E-value=0.0038  Score=56.17  Aligned_cols=121  Identities=16%  Similarity=0.182  Sum_probs=74.1

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc---------hhhhhhhcccCCceEEEEec-CCC---H
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTNAVVRGFLG-QQQ---L  108 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~---------g~~~DL~~~~~~~~v~~~~~-t~d---~  108 (305)
                      ++.+.+++.|+||+|.+|..++..|++.|.  +|+++|++...         ....++...  ..++..+.. -+|   .
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v   80 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEA--GGQALPIVGDIRDGDAV   80 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHH--TSEEEEEECCTTSHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhc--CCcEEEEECCCCCHHHH
Confidence            344456899999999999999999999998  99999987621         112222221  123333211 122   2


Q ss_pred             HHHh-------CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC---CCcEEEEecCCC
Q 021932          109 EDAL-------TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC---PKAIVNLISNPV  166 (305)
Q Consensus       109 ~~al-------~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~~---p~aiviv~tNPv  166 (305)
                      ++.+       ...|++|.+||.....   ..+   ....+..|+.....+.+.+.+.-   ..+.|+++|...
T Consensus        81 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~  154 (285)
T 3sc4_A           81 AAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPI  154 (285)
T ss_dssp             HHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChh
Confidence            2222       3899999999975321   112   23455678777777777666552   346777776543

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.08  E-value=0.0013  Score=58.78  Aligned_cols=110  Identities=15%  Similarity=0.078  Sum_probs=64.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe-cCCC---HHHH-------hCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------LTG  114 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a-------l~~  114 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.....  ++..    ..+..+. .-+|   .+++       +..
T Consensus        16 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~--~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   87 (266)
T 3p19_A           16 KKLVVITGASSGIGEAIARRFSEEGH--PLLLLARRVERLK--ALNL----PNTLCAQVDVTDKYTFDTAITRAEKIYGP   87 (266)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHH--TTCC----TTEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHH--Hhhc----CCceEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            45799999999999999999999998  8999998641111  1111    0111110 0112   2222       337


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHH----HHHHHHHhCCCcEEEEecC
Q 021932          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKT----LCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       115 aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~----i~~~I~~~~p~aiviv~tN  164 (305)
                      .|++|.+||......   .+   ....+..|+.....    +.+.+.+... +.|+++|.
T Consensus        88 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~-g~IV~isS  146 (266)
T 3p19_A           88 ADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNC-GTIINISS  146 (266)
T ss_dssp             EEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEcC
Confidence            899999999753211   12   22345666554444    5555555543 45555543

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.06  E-value=0.0024  Score=58.56  Aligned_cols=115  Identities=16%  Similarity=0.217  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC----------chh----hhhhhcccCCceEEEEec-CCC---
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----------PGV----TADISHMDTNAVVRGFLG-QQQ---  107 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~----------~g~----~~DL~~~~~~~~v~~~~~-t~d---  107 (305)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|++..          ...    ..++...  ..++..+.. -+|   
T Consensus        46 gk~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~  121 (317)
T 3oec_A           46 GKVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ--GRRIIARQADVRDLAS  121 (317)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence            45789999999999999999999998  9999998620          011    1112111  123332211 122   


Q ss_pred             HHHHh-------CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          108 LEDAL-------TGMDIVIIPAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       108 ~~~al-------~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      .++.+       ...|++|.+||.....   ..+   ....+..|+.    +.+.+.+.+.+....+.|+++|.
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS  195 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSS  195 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECc
Confidence            22222       3789999999975321   112   2334556654    44455555555555677777764

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.06  E-value=0.013  Score=54.58  Aligned_cols=121  Identities=19%  Similarity=0.226  Sum_probs=73.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc---------hhhhhhhcccCCceEEEEec-CCC---HHH
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTNAVVRGFLG-QQQ---LED  110 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~---------g~~~DL~~~~~~~~v~~~~~-t~d---~~~  110 (305)
                      .+.+.|.|+||+|.+|..++..|++.|.  +|+++|+++..         ..+.++...  ...+..+.. -+|   .++
T Consensus        43 l~gk~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~--g~~~~~~~~Dv~d~~~v~~  118 (346)
T 3kvo_A           43 LAGCTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAV--GGKALPCIVDVRDEQQISA  118 (346)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHT--TCEEEEEECCTTCHHHHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHH
Confidence            3446899999999999999999999998  99999987621         112223222  122332211 122   222


Q ss_pred             Hh-------CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCCCCc
Q 021932          111 AL-------TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC---CPKAIVNLISNPVNS  168 (305)
Q Consensus       111 al-------~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~---~p~aiviv~tNPvd~  168 (305)
                      ++       ...|++|.+||......   .+   ....+..|+.....+.+.+..+   ...+.||++|.+...
T Consensus       119 ~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~  192 (346)
T 3kvo_A          119 AVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNL  192 (346)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCC
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHc
Confidence            22       38999999999643211   11   2345667776666555555433   234677777765543

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=97.06  E-value=0.0012  Score=58.34  Aligned_cols=116  Identities=16%  Similarity=0.096  Sum_probs=65.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCC---HHHH------hC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ---LEDA------LT  113 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a------l~  113 (305)
                      .+.+++.|+||+|.+|..++..|+..|.  +|+++|++.. ....++.     ..+..+.. -+|   .+++      +.
T Consensus         7 l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~-~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~g   78 (257)
T 3tl3_A            7 IRDAVAVVTGGASGLGLATTKRLLDAGA--QVVVLDIRGE-DVVADLG-----DRARFAAADVTDEAAVASALDLAETMG   78 (257)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCH-HHHHHTC-----TTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             ecCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCchH-HHHHhcC-----CceEEEECCCCCHHHHHHHHHHHHHhC
Confidence            3445899999999999999999999998  9999998541 1111111     11111110 111   2222      34


Q ss_pred             CCCEEEEcCCCCCC----------CCCchhhHHHhhHHHHHHHHHHHHHh-----------CCCcEEEEecCCCC
Q 021932          114 GMDIVIIPAGVPRK----------PGMTRDDLFNINAGIVKTLCEGIAKC-----------CPKAIVNLISNPVN  167 (305)
Q Consensus       114 ~aDiVIi~ag~~~~----------~g~~r~d~~~~N~~i~~~i~~~I~~~-----------~p~aiviv~tNPvd  167 (305)
                      ..|++|.+||....          ..+...+.+..|+.....+.+.+.+.           ...+.|+++|.-..
T Consensus        79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~  153 (257)
T 3tl3_A           79 TLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAA  153 (257)
T ss_dssp             CEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC-
T ss_pred             CCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhh
Confidence            89999999986421          11122345666766555554444433           23466777765443

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.06  E-value=0.0048  Score=54.75  Aligned_cols=118  Identities=16%  Similarity=0.155  Sum_probs=72.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-----chhhhhhhcccCCceEEEEec-CCC---HHHHh-
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-  112 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-----~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-  112 (305)
                      +.+.+++.|+||+|.+|..++..|+..|.  +|+++|+...     .....++...  ..++..+.. -+|   .++.+ 
T Consensus         8 ~l~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~   83 (262)
T 3ksu_A            8 DLKNKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQ--GAKVALYQSDLSNEEEVAKLFD   83 (262)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTT--TCEEEEEECCCCSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHH
Confidence            34456899999999999999999999998  8999886431     1122233322  223333211 122   22222 


Q ss_pred             ------CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          113 ------TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       113 ------~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                            ...|++|.+||......   .+   ....+..|+.....+.+.+.+.- +.+.|++++.
T Consensus        84 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS  148 (262)
T 3ksu_A           84 FAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIAT  148 (262)
T ss_dssp             HHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEec
Confidence                  37899999999653221   11   23456678877777777776553 3456666654

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.05  E-value=0.0049  Score=56.81  Aligned_cols=36  Identities=19%  Similarity=0.094  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D-~~~   82 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++| +++
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~   81 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   81 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            345799999999999999999999998  899999 765

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.05  E-value=0.0038  Score=54.94  Aligned_cols=110  Identities=15%  Similarity=0.203  Sum_probs=64.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHHh-------C
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDAL-------T  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al-------~  113 (305)
                      +++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.     ..+..+. .-+|   .++.+       .
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   73 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWC   73 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHTSCTTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            3789999999999999999999998  8999998752  11112221     1122111 1112   22222       3


Q ss_pred             CCCEEEEcCCCCC--CC--CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPR--KP--GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~--~~--g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..|++|.+||...  .+  ..+   ....+..|+..    .+.+.+.+.+.. .+.|+++|.
T Consensus        74 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS  134 (248)
T 3asu_A           74 NIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIGS  134 (248)
T ss_dssp             CCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEcc
Confidence            6899999999752  11  111   23345566544    455555555544 355565553

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.04  E-value=0.00097  Score=59.13  Aligned_cols=115  Identities=12%  Similarity=0.092  Sum_probs=69.6

Q ss_pred             CCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEe-cCCC---HHHHhC-----
Q 021932           46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFL-GQQQ---LEDALT-----  113 (305)
Q Consensus        46 ~~KI~IIGaa--G~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al~-----  113 (305)
                      .+++.|+||+  |.+|..++..|+..|.  +|+++|+++. .....++....  ..+..+. .-+|   .+++++     
T Consensus         8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEAL--GGALLFRADVTQDEELDALFAGVKEA   83 (261)
T ss_dssp             TCEEEEESCCSSSSHHHHHHHHHHHHTC--EEEEEESCGGGHHHHHHHHHHT--TCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            3589999998  8999999999999998  8999998752 11222332211  0111111 1122   222233     


Q ss_pred             --CCCEEEEcCCCCCC-----C--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          114 --GMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       114 --~aDiVIi~ag~~~~-----~--g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                        ..|++|.+||....     +  ..+   ....+..|+.....+.+.+.+.- ..+.|+++|.
T Consensus        84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  147 (261)
T 2wyu_A           84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY  147 (261)
T ss_dssp             HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence              78999999997532     1  112   23456778877777777776542 1355666653

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=97.04  E-value=0.0039  Score=58.26  Aligned_cols=95  Identities=22%  Similarity=0.303  Sum_probs=58.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ....++|+|||. |.+|+.+|..+...|.  +|..+|+.....       .    ....   ..++++.+++||+|+++.
T Consensus       168 ~l~gktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-------~----~~~~---~~sl~ell~~aDvVil~v  230 (340)
T 4dgs_A          168 SPKGKRIGVLGL-GQIGRALASRAEAFGM--SVRYWNRSTLSG-------V----DWIA---HQSPVDLARDSDVLAVCV  230 (340)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCTT-------S----CCEE---CSSHHHHHHTCSEEEECC
T ss_pred             cccCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCcccc-------c----Ccee---cCCHHHHHhcCCEEEEeC
Confidence            344569999999 9999999999998888  999999865321       0    0111   236788999999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHH-HHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          123 GVPRKPGMTRDDLFNINAGIV-KTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~-~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      ...  + +++        .++ +   +.+....|++++|+++  .++|.
T Consensus       231 P~t--~-~t~--------~li~~---~~l~~mk~gailIN~aRG~vvde  265 (340)
T 4dgs_A          231 AAS--A-ATQ--------NIVDA---SLLQALGPEGIVVNVARGNVVDE  265 (340)
T ss_dssp             ---------------------CH---HHHHHTTTTCEEEECSCC-----
T ss_pred             CCC--H-HHH--------HHhhH---HHHhcCCCCCEEEECCCCcccCH
Confidence            321  1 111        111 2   2233345889999986  44543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.04  E-value=0.002  Score=57.24  Aligned_cols=113  Identities=13%  Similarity=0.040  Sum_probs=65.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHh-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  +.....++....  .++..+.. -+|   .++.+       
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKAY   86 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  899999875  222233333221  22222211 122   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g----~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ...|++|.+||.....+    .+   ..+.+..|+...    +.+.+.+.+..  +.|+++|.
T Consensus        87 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  147 (264)
T 3ucx_A           87 GRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK--GAVVNVNS  147 (264)
T ss_dssp             SCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT--CEEEEECC
T ss_pred             CCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEECc
Confidence            37899999998642211    12   223455565444    44444454443  56666653

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=97.03  E-value=0.00065  Score=58.75  Aligned_cols=104  Identities=21%  Similarity=0.236  Sum_probs=69.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|++..    .|+.+...   ++      ...+.+...|++|.+||..
T Consensus         6 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~----~D~~~~~~---v~------~~~~~~g~id~lv~nAg~~   70 (223)
T 3uce_A            6 KTVYVVLGGTSGIGAELAKQLESEHT--IVHVASRQTG----LDISDEKS---VY------HYFETIGAFDHLIVTAGSY   70 (223)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHCSTTE--EEEEESGGGT----CCTTCHHH---HH------HHHHHHCSEEEEEECCCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEecCCcc----cCCCCHHH---HH------HHHHHhCCCCEEEECCCCC
Confidence            45789999999999999999998887  8999987542    44444321   10      1123456889999999965


Q ss_pred             CCCC----Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          126 RKPG----MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       126 ~~~g----~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                      ...+    .+   ....+..|+.....+.+.+.++- +.+.|+++|.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS  117 (223)
T 3uce_A           71 APAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSG  117 (223)
T ss_dssp             CCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecc
Confidence            2211    22   23456778887777777776654 3456666653

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.02  E-value=0.0036  Score=59.11  Aligned_cols=71  Identities=24%  Similarity=0.464  Sum_probs=48.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++||+|+||+|++|.-+...|..+++ ..||.++.-....|+...+..    ..+....  .+ .+.++++|+||++.|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~----~~~~~~~--~~-~~~~~~~Dvvf~a~~   73 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKD----QDITIEE--TT-ETAFEGVDIALFSAG   73 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETT----EEEEEEE--CC-TTTTTTCSEEEECSC
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecC----CCceEee--CC-HHHhcCCCEEEECCC
Confidence            46999999999999999998888753 458888876444444333221    1233211  12 245789999999875

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.08  E-value=9.9e-05  Score=63.85  Aligned_cols=64  Identities=13%  Similarity=0.148  Sum_probs=45.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +.+||+|||+ |.+|..++..|...|+  +|.++|+++.   ...+...    .+..   . +.+++++++|+||++.
T Consensus        18 ~~~~I~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~---~~~~~~~----g~~~---~-~~~~~~~~aDvVilav   81 (201)
T 2yjz_A           18 KQGVVCIFGT-GDFGKSLGLKMLQCGY--SVVFGSRNPQ---VSSLLPR----GAEV---L-CYSEAASRSDVIVLAV   81 (201)
Confidence            4468999998 9999999999988887  8899988642   1112111    1221   1 3457789999999986

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.02  E-value=0.002  Score=57.12  Aligned_cols=113  Identities=17%  Similarity=0.139  Sum_probs=64.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHHh-------
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDAL-------  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~-D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al-------  112 (305)
                      +++.|+||+|.+|..++..|++.|.  +|++. ++++  +.....++...  ..++..+.. -+|   .++.+       
T Consensus         5 k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (258)
T 3oid_A            5 KCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKL--GVKVLVVKANVGQPAKIKEMFQQIDETF   80 (258)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999998  88886 6554  22222333322  122332211 122   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHH----HHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLC----EGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~----~~I~~~~p~aiviv~tN  164 (305)
                      ...|++|.+||......   .+   ....+..|+.....+.    +.+.+.. .+.|+++|.
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS  141 (258)
T 3oid_A           81 GRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNG-GGHIVSISS  141 (258)
T ss_dssp             SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECc
Confidence            35699999998643211   11   2234566665444444    4444433 455665543

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.01  E-value=0.0025  Score=56.89  Aligned_cols=115  Identities=15%  Similarity=0.121  Sum_probs=68.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEe-cCCC---HHHH-------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------  111 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a-------  111 (305)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.+...   ......++....  .++..+. .-+|   .++.       
T Consensus        27 ~k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           27 NKVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEA  102 (267)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            34799999999999999999999998  888876543   122222233221  2222221 1122   2222       


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          112 LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                      +...|++|.+||......   .+   ....+..|+.....+.+.+.+.- ..+.|+++|.
T Consensus       103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  162 (267)
T 3u5t_A          103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMST  162 (267)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence            237899999999753221   11   23455678777777776666553 3466666653

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.00  E-value=0.0033  Score=54.78  Aligned_cols=109  Identities=14%  Similarity=0.212  Sum_probs=63.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHH-------HHhCCCCEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLE-------DALTGMDIV  118 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~-------~al~~aDiV  118 (305)
                      +++.|+||+|.+|..++..|+..|.  +|+++|+++.. ...++. .   ..+.. ... .+.+       +.+.+.|++
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~--~V~~~~r~~~~-~~~~~~-~---~~~~~D~~~-~~~~~~~~~~~~~~g~id~l   74 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY--RVAIASRNPEE-AAQSLG-A---VPLPTDLEK-DDPKGLVKRALEALGGLHVL   74 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHH-HHHHHT-C---EEEECCTTT-SCHHHHHHHHHHHHTSCCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHhhC-c---EEEecCCch-HHHHHHHHHHHHHcCCCCEE
Confidence            4899999999999999999999998  99999987622 111121 0   00000 000 1222       234589999


Q ss_pred             EEcCCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          119 IIPAGVPRKP---GMT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       119 Ii~ag~~~~~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      |.+||.....   ..+   ..+.+..|+..    .+.+.+.+.+.. .+.|+++|.
T Consensus        75 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS  129 (239)
T 2ekp_A           75 VHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG-WGRVLFIGS  129 (239)
T ss_dssp             EECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence            9999864321   112   22344555544    445555555544 355555553

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.99  E-value=0.00087  Score=60.79  Aligned_cols=139  Identities=17%  Similarity=0.140  Sum_probs=67.8

Q ss_pred             hhhCCCccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhhhhhhccc
Q 021932           17 AHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD   94 (305)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~   94 (305)
                      -|-|++++-+--+.-+|.+|.-+++    .+.+.|+||++-+|..+|..|+..|.  .|++.|+++  +...+.++....
T Consensus         4 ~~~~~s~~~~~~~n~~~~~Ms~rL~----gKvalVTGas~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~~g~~~   77 (273)
T 4fgs_A            4 HHHHSSGVDLGTENLYFQSMTQRLN----AKIAVITGATSGIGLAAAKRFVAEGA--RVFITGRRKDVLDAAIAEIGGGA   77 (273)
T ss_dssp             ---------------------CTTT----TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCTTC
T ss_pred             ccccccCCCccccccchhhhcchhC----CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCCe
Confidence            3678899988667767877765442    23677889999999999999999998  999999976  222233332111


Q ss_pred             CCceEEE-EecCC-------CHHHHhCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEE
Q 021932           95 TNAVVRG-FLGQQ-------QLEDALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIV  159 (305)
Q Consensus        95 ~~~~v~~-~~~t~-------d~~~al~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiv  159 (305)
                        ..+.. +....       ...+.+-.-|++|..||......   .+   ..+.+..|+.-.-.+.+...++- ..+-|
T Consensus        78 --~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~I  155 (273)
T 4fgs_A           78 --VGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSV  155 (273)
T ss_dssp             --EEEECCTTCHHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEE
T ss_pred             --EEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeE
Confidence              01110 00000       11234457899999998643211   12   33456667666555555544432 23455


Q ss_pred             EEec
Q 021932          160 NLIS  163 (305)
Q Consensus       160 iv~t  163 (305)
                      |+++
T Consensus       156 Inis  159 (273)
T 4fgs_A          156 VLTG  159 (273)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            5554

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.98  E-value=0.0064  Score=54.22  Aligned_cols=110  Identities=20%  Similarity=0.168  Sum_probs=63.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC---HHHH-------h
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ---LEDA-------L  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d---~~~a-------l  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++..      +..+. .-+|   .++.       +
T Consensus         9 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (270)
T 1yde_A            9 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPG------AVFILCDVTQEDDVKTLVSETIRRF   80 (270)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTT------EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC------CeEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  8999998752  111112211      11111 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g----~~---r~d~~~~N~~i~~~i~~~I~~~~--p~aiviv~t  163 (305)
                      ...|++|.+||.....+    .+   ....+..|+.....+.+.+.++-  ..+.|+++|
T Consensus        81 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~is  140 (270)
T 1yde_A           81 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINIS  140 (270)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence            37899999998643211    11   23345666655444444443210  135566555

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.98  E-value=0.0039  Score=56.06  Aligned_cols=114  Identities=20%  Similarity=0.225  Sum_probs=66.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---HHHH-------h
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------L  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-------l  112 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++  +.....++...  ..++..+.. -+|   .++.       +
T Consensus         8 gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            8 GKIAIVTGASSGIGRAAALLFAREGA--KVVVTARNGNALAELTDEIAGG--GGEAAALAGDVGDEALHEALVELAVRRF   83 (280)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHTTT--TCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            34789999999999999999999998  899999876  22222333221  122222211 112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g----~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ...|++|.+||.....+    .+   ....+..|+...    +.+.+.+.+.. .+.|+++|.
T Consensus        84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  145 (280)
T 3tox_A           84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALG-GGSLTFTSS  145 (280)
T ss_dssp             SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            37899999999642211    12   223455565544    44444444433 456666654

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.97  E-value=0.0045  Score=56.69  Aligned_cols=35  Identities=31%  Similarity=0.421  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~   81 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~   60 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIG   60 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCc
Confidence            345788999999999999999999998  99999986

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.95  E-value=0.0018  Score=58.75  Aligned_cols=76  Identities=21%  Similarity=0.230  Sum_probs=47.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EeCCCCchhhhhhhcccC-CceEEEEecCCCHHHHhCCCCEEEE
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNTPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L-~D~~~~~g~~~DL~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      .++++||+|+||+|.+|+.++..+...+-. ||+- +|.+.......|+..... ...+.   ..+|+++.++++|+||.
T Consensus         4 ~M~mikV~V~Ga~G~MG~~i~~~l~~~~~~-eLv~~~d~~~~~~~G~d~gel~g~~~gv~---v~~dl~~ll~~~DVVID   79 (272)
T 4f3y_A            4 SMSSMKIAIAGASGRMGRMLIEAVLAAPDA-TLVGALDRTGSPQLGQDAGAFLGKQTGVA---LTDDIERVCAEADYLID   79 (272)
T ss_dssp             --CCEEEEESSTTSHHHHHHHHHHHHCTTE-EEEEEBCCTTCTTTTSBTTTTTTCCCSCB---CBCCHHHHHHHCSEEEE
T ss_pred             CccccEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEEecCcccccccHHHHhCCCCCce---ecCCHHHHhcCCCEEEE
Confidence            345689999997799999999988876543 5554 787642111122222111 11222   23578788889999998


Q ss_pred             cC
Q 021932          121 PA  122 (305)
Q Consensus       121 ~a  122 (305)
                      +.
T Consensus        80 fT   81 (272)
T 4f3y_A           80 FT   81 (272)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.95  E-value=0.0045  Score=57.12  Aligned_cols=134  Identities=16%  Similarity=0.167  Sum_probs=75.3

Q ss_pred             CCCEEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHh--CCCCEEEEc
Q 021932           45 PGFKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL--TGMDIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~-la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al--~~aDiVIi~  121 (305)
                      .++||.|||. |-.|.+ +|..|..+|+  +|.++|..+.......|....  ..+.  .+. +. +.+  .++|+||.+
T Consensus         3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G~--~V~~~D~~~~~~~~~~L~~~g--i~v~--~g~-~~-~~l~~~~~d~vV~S   73 (326)
T 3eag_A            3 AMKHIHIIGI-GGTFMGGLAAIAKEAGF--EVSGCDAKMYPPMSTQLEALG--IDVY--EGF-DA-AQLDEFKADVYVIG   73 (326)
T ss_dssp             CCCEEEEESC-CSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHTT--CEEE--ESC-CG-GGGGSCCCSEEEEC
T ss_pred             CCcEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEcCCCCcHHHHHHHhCC--CEEE--CCC-CH-HHcCCCCCCEEEEC
Confidence            4579999999 999996 8899999999  999999865211222344322  2232  232 33 445  489999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCCCC--ccHHHHHHHHHHhCCCCCCcEEE
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVN--STVPIAAEVFKKVGTYDPKRLLG  190 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~tNPvd--~lt~~~~~~~~~~s~~p~~kviG  190 (305)
                      .|+|.... ......+.+++++.++ +.+.++ ..+..+|-+|-...  ..|.++.++++.. |+++..++|
T Consensus        74 pgi~~~~p-~~~~a~~~gi~v~~~~-e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~-g~~~~~~~g  142 (326)
T 3eag_A           74 NVAKRGMD-VVEAILNLGLPYISGP-QWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA-GLAPGFLIG  142 (326)
T ss_dssp             TTCCTTCH-HHHHHHHTTCCEEEHH-HHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT-TCCCEEECS
T ss_pred             CCcCCCCH-HHHHHHHcCCcEEeHH-HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc-CCCceEEec
Confidence            88864211 1112223344444332 222221 23334455554443  4556666666543 555433343

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=96.94  E-value=0.0033  Score=57.96  Aligned_cols=116  Identities=16%  Similarity=0.130  Sum_probs=65.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--C-chhhhhhhccc--CCceEEEEec-CCC---HHHHhC--
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVTADISHMD--TNAVVRGFLG-QQQ---LEDALT--  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~-~g~~~DL~~~~--~~~~v~~~~~-t~d---~~~al~--  113 (305)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.+++.  . .....++....  ...++..+.. -+|   .+++++  
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~--~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~   81 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGH--RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQI   81 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence            345799999999999999999999998  888887753  1 11111111110  0122332211 112   233333  


Q ss_pred             -----CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHH----HHhCCCcEEEEec
Q 021932          114 -----GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGI----AKCCPKAIVNLIS  163 (305)
Q Consensus       114 -----~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I----~~~~p~aiviv~t  163 (305)
                           ..|++|.+||.....   ..+   ....+..|+.....+.+.+    .+.. .+.|+++|
T Consensus        82 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~-~g~iV~is  145 (324)
T 3u9l_A           82 IGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQK-HGLLIWIS  145 (324)
T ss_dssp             HHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEe
Confidence                 899999999964211   111   2334566766555554444    5544 35555554

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.94  E-value=0.0035  Score=55.69  Aligned_cols=113  Identities=15%  Similarity=0.215  Sum_probs=64.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEe-cCCCH---HHHh-------
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFL-GQQQL---EDAL-------  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~t~d~---~~al-------  112 (305)
                      +++.|+||+|.+|..++..|+..|.  .|++.|....   .....++...  ..++..+. .-+|.   ++.+       
T Consensus        26 k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           26 RVAFVTGGMGGLGAAISRRLHDAGM--AVAVSHSERNDHVSTWLMHERDA--GRDFKAYAVDVADFESCERCAEKVLADF  101 (269)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEECSCHHHHHHHHHHHHTT--TCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4688999999999999999999998  8999996541   1111222221  12222221 11222   2222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHH----HHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIV----KTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~----~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ...|++|.+||.....   ..+   ....+..|+...    +.+.+.+.+.. .+.|+++|.
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~g~iv~isS  162 (269)
T 3gk3_A          102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERR-FGRIVNIGS  162 (269)
T ss_dssp             SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEeCC
Confidence            3799999999965321   112   223455565544    44444444443 456666653

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.94  E-value=0.0019  Score=60.67  Aligned_cols=98  Identities=19%  Similarity=0.159  Sum_probs=58.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEeCCCCchhhhhhhcccCC--ceEEEEecCCCHHHHhCCCCEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVNTPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIV  118 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~-----~~~el~L~D~~~~~g~~~DL~~~~~~--~~v~~~~~t~d~~~al~~aDiV  118 (305)
                      ++||+|+||+|.+|..+...|..++     .. ||+++-.....|+..+-.|....  ..+....  .+ .++++++|+|
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~-ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~--~~-~~~~~~~DvV   84 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRL-RIGALTAATSAGSTLGEHHPHLTPLAHRVVEP--TE-AAVLGGHDAV   84 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSE-EEEEEEESSCTTSBGGGTCTTCGGGTTCBCEE--CC-HHHHTTCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccE-EEEEEECCCcCCCchhhhcccccccceeeecc--CC-HHHhcCCCEE
Confidence            4699999999999999999998877     33 77777432222332221111100  1122111  23 3568899999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 021932          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (305)
Q Consensus       119 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv  166 (305)
                      |.+.|..    .            .+++++.+ +.  .+++|-.|.|-
T Consensus        85 f~alg~~----~------------s~~~~~~~-~~--G~~vIDlSa~~  113 (352)
T 2nqt_A           85 FLALPHG----H------------SAVLAQQL-SP--ETLIIDCGADF  113 (352)
T ss_dssp             EECCTTS----C------------CHHHHHHS-CT--TSEEEECSSTT
T ss_pred             EECCCCc----c------------hHHHHHHH-hC--CCEEEEECCCc
Confidence            9997532    1            23455555 33  35777778775

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.93  E-value=0.0027  Score=56.62  Aligned_cols=116  Identities=14%  Similarity=0.094  Sum_probs=70.1

Q ss_pred             CCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCC---HHHHh-------
Q 021932           46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaa--G~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d---~~~al-------  112 (305)
                      .++|.|+||+  |.+|..++..|+..|.  +|+++|+++. .....++............ .-+|   .++.+       
T Consensus         6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~-D~~~~~~v~~~~~~~~~~~   82 (275)
T 2pd4_A            6 GKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYEL-DVSKEEHFKSLYNSVKKDL   82 (275)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEEC-CTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEc-CCCCHHHHHHHHHHHHHHc
Confidence            3589999998  8999999999999998  8999998762 2222233221101111111 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCC-----C--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~-----~--g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                      ...|++|.+||....     +  ..+   ....+..|+.....+.+.+.+.- ..+.|+++|.
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (275)
T 2pd4_A           83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY  145 (275)
T ss_dssp             SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence            367999999997532     1  112   23456778888777777776653 2356666653

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.93  E-value=0.0028  Score=55.52  Aligned_cols=108  Identities=12%  Similarity=0.074  Sum_probs=63.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-e--CCCC--chhhhhhhcccCCceEEEEecCCCHHHH-------hCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-D--VVNT--PGVTADISHMDTNAVVRGFLGQQQLEDA-------LTG  114 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~-D--~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~~a-------l~~  114 (305)
                      +++.|+||+|.+|..++..|+..|.  +|+++ |  +++.  .....++ .   ..++.   ...+.++.       +..
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~r~~~~~~~~~~~~-~---~~~~~---~~~~v~~~~~~~~~~~g~   72 (244)
T 1zmo_A            2 VIALVTHARHFAGPAAVEALTQDGY--TVVCHDASFADAAERQRFESEN-P---GTIAL---AEQKPERLVDATLQHGEA   72 (244)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHS-T---TEEEC---CCCCGGGHHHHHGGGSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCcCCHHHHHHHHHHh-C---CCccc---CHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999998  89999 5  7641  1112222 1   11111   11122222       347


Q ss_pred             CCEEEEcCCCCCC---C---CCc---hhhHHHhhHHHHH----HHHHHHHHhCCCcEEEEecC
Q 021932          115 MDIVIIPAGVPRK---P---GMT---RDDLFNINAGIVK----TLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       115 aDiVIi~ag~~~~---~---g~~---r~d~~~~N~~i~~----~i~~~I~~~~p~aiviv~tN  164 (305)
                      .|++|.+||....   .   ..+   ....+..|+....    .+.+.+.+.. .+.|+++|.
T Consensus        73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS  134 (244)
T 1zmo_A           73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAG-GASVIFITS  134 (244)
T ss_dssp             EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence            8999999996533   1   112   2334566665444    4444444433 456666654

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.93  E-value=0.004  Score=55.85  Aligned_cols=116  Identities=12%  Similarity=0.081  Sum_probs=69.4

Q ss_pred             CCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCC---HHHHh-------
Q 021932           46 GFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQ---LEDAL-------  112 (305)
Q Consensus        46 ~~KI~IIGaa--G~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d---~~~al-------  112 (305)
                      .++|.|+||+  |.+|..++..|+..|.  +|+++|+++. .....++............ .-+|   .++.+       
T Consensus        21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~-Dl~~~~~v~~~~~~~~~~~   97 (285)
T 2p91_A           21 GKRALITGVANERSIAYGIAKSFHREGA--QLAFTYATPKLEKRVREIAKGFGSDLVVKC-DVSLDEDIKNLKKFLEENW   97 (285)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEEC-CTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEc-CCCCHHHHHHHHHHHHHHc
Confidence            4589999998  8999999999999998  8999998752 1122233221101111111 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCC-----C--CCc---hhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRK-----P--GMT---RDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~-----~--g~~---r~d~~~~N~~i~~~i~~~I~~~~--p~aiviv~tN  164 (305)
                      ...|++|.+||....     +  ..+   ....+..|+.....+.+.+.+.-  ..+.|+++|.
T Consensus        98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  161 (285)
T 2p91_A           98 GSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSY  161 (285)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEEC
T ss_pred             CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence            378999999997532     1  112   23456778877777777776553  2356666653

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.91  E-value=0.0063  Score=54.84  Aligned_cols=35  Identities=20%  Similarity=0.096  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D-~~~   82 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++| ++.
T Consensus         9 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~   44 (291)
T 1e7w_A            9 VPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   44 (291)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCH
Confidence            35799999999999999999999998  899999 765

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.89  E-value=0.0017  Score=60.34  Aligned_cols=67  Identities=24%  Similarity=0.357  Sum_probs=49.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ...+||+|||. |.+|..+|..+...|.  +|..+|++.......++   .    +..    .++++.+++||+|+++..
T Consensus       148 l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~~~l~~aDvVil~vp  213 (334)
T 2dbq_A          148 VYGKTIGIIGL-GRIGQAIAKRAKGFNM--RILYYSRTRKEEVEREL---N----AEF----KPLEDLLRESDFVVLAVP  213 (334)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHH---C----CEE----CCHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEECCCcchhhHhhc---C----ccc----CCHHHHHhhCCEEEECCC
Confidence            44569999998 9999999999998887  99999987633111111   1    121    256788999999999874


Q ss_pred             C
Q 021932          124 V  124 (305)
Q Consensus       124 ~  124 (305)
                      .
T Consensus       214 ~  214 (334)
T 2dbq_A          214 L  214 (334)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.87  E-value=0.014  Score=52.67  Aligned_cols=118  Identities=17%  Similarity=0.123  Sum_probs=66.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCC--CchhhhhhhcccCCceEEEEec----CCCHHHHh------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG----QQQLEDAL------  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al------  112 (305)
                      .+++.|+||+|.+|..++..|+..|. ...|++.|++.  +...+.++.......++..+..    ..+.++.+      
T Consensus        33 ~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  112 (287)
T 3rku_A           33 KKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQE  112 (287)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCGG
T ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            35899999999999999999987764 23889999875  2222233332211123332211    11232333      


Q ss_pred             -CCCCEEEEcCCCCCCCC----Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          113 -TGMDIVIIPAGVPRKPG----MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 -~~aDiVIi~ag~~~~~g----~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                       ...|++|.+||.....+    .+   ..+.+..|+..    .+.+.+.+.+.. .+.||+++.
T Consensus       113 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS  175 (287)
T 3rku_A          113 FKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN-SGDIVNLGS  175 (287)
T ss_dssp             GCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence             36899999999643211    12   23345566554    444444445544 455555553

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.86  E-value=0.0082  Score=55.13  Aligned_cols=114  Identities=18%  Similarity=0.244  Sum_probs=65.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----------CchhhhhhhcccCCceEEE-EecCCCHHH--
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----------TPGVTADISHMDTNAVVRG-FLGQQQLED--  110 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-----------~~g~~~DL~~~~~~~~v~~-~~~t~d~~~--  110 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+..           +...+.++....  ..... .....+.++  
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga--~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~--~~~~~D~~~~~~~~~~~   83 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG--GKAVANYDSVEAGEKLV   83 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT--CEEEEECCCGGGHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCcccccccCCHHHHHHHHHHHHhhC--CeEEEeCCCHHHHHHHH
Confidence            345899999999999999999999998  999988631           111122332211  11111 111111112  


Q ss_pred             -----HhCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEec
Q 021932          111 -----ALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       111 -----al~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~t  163 (305)
                           .+...|++|.+||......   .+   ....+..|+..    .+.+.+.+.+... +.||++|
T Consensus        84 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-grIV~vs  150 (319)
T 1gz6_A           84 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNY-GRIIMTA  150 (319)
T ss_dssp             HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEC
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEC
Confidence                 2347899999999754321   12   22345566655    4445555555543 4555554

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.86  E-value=0.0042  Score=54.75  Aligned_cols=116  Identities=16%  Similarity=0.137  Sum_probs=68.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHh---CCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCCH---HHHh----C
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---EDAL----T  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~---~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d~---~~al----~  113 (305)
                      +++.|+||+|.+|..++..|++   .|.  +|+++|+++  +.....++.......++..+.. -+|.   ++.+    +
T Consensus         7 k~~lVTGas~gIG~~ia~~l~~~~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (259)
T 1oaa_A            7 AVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cEEEEeCCCChHHHHHHHHHHHhhcCCC--eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence            4788999999999999999998   787  999999875  2222233332110122332211 1222   1111    1


Q ss_pred             -----CCC--EEEEcCCCCCCCC------Cc---hhhHHHhhHHHHHHHHHHHHHhC-----CCcEEEEecC
Q 021932          114 -----GMD--IVIIPAGVPRKPG------MT---RDDLFNINAGIVKTLCEGIAKCC-----PKAIVNLISN  164 (305)
Q Consensus       114 -----~aD--iVIi~ag~~~~~g------~~---r~d~~~~N~~i~~~i~~~I~~~~-----p~aiviv~tN  164 (305)
                           ..|  ++|.+||.....+      .+   ....+..|+.....+.+.+.+.-     ..+.|+++|.
T Consensus        85 ~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS  156 (259)
T 1oaa_A           85 LPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS  156 (259)
T ss_dssp             SCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECC
T ss_pred             ccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcC
Confidence                 347  9999999743211      12   23456678777777777666543     2355666654

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.85  E-value=0.0023  Score=59.87  Aligned_cols=68  Identities=19%  Similarity=0.235  Sum_probs=49.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCCch-hhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~-~~~~~~el~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      ....++|+|||. |.+|..+|..+. ..|.  +|..+|++.... ...++   .    +..   ..++++.+++||+|++
T Consensus       160 ~l~g~~vgIIG~-G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~~~~~---g----~~~---~~~l~ell~~aDvVil  226 (348)
T 2w2k_A          160 NPRGHVLGAVGL-GAIQKEIARKAVHGLGM--KLVYYDVAPADAETEKAL---G----AER---VDSLEELARRSDCVSV  226 (348)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHH---T----CEE---CSSHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEEEE-CHHHHHHHHHHHHhcCC--EEEEECCCCcchhhHhhc---C----cEE---eCCHHHHhccCCEEEE
Confidence            344569999998 999999999998 8887  999999875221 11111   1    121   1357788999999999


Q ss_pred             cCC
Q 021932          121 PAG  123 (305)
Q Consensus       121 ~ag  123 (305)
                      +..
T Consensus       227 ~vp  229 (348)
T 2w2k_A          227 SVP  229 (348)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            864

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.84  E-value=0.0014  Score=60.56  Aligned_cols=99  Identities=19%  Similarity=0.236  Sum_probs=63.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ....++|+|||. |.+|+.+|..+...|.  +|..+|......     ..      +....+..++++.+++||+|+++.
T Consensus       136 ~l~g~tvGIiG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-----~~------~~~~~~~~~l~ell~~aDiV~l~~  201 (315)
T 3pp8_A          136 TREEFSVGIMGA-GVLGAKVAESLQAWGF--PLRCWSRSRKSW-----PG------VESYVGREELRAFLNQTRVLINLL  201 (315)
T ss_dssp             CSTTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSCCCC-----TT------CEEEESHHHHHHHHHTCSEEEECC
T ss_pred             CcCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCchhh-----hh------hhhhcccCCHHHHHhhCCEEEEec
Confidence            344569999999 9999999999998888  999999865210     00      011111236788999999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      ...  + +++. ++  |.       +.+....|.+++|+++  .++|.
T Consensus       202 Plt--~-~t~~-li--~~-------~~l~~mk~gailIN~aRG~~vd~  236 (315)
T 3pp8_A          202 PNT--A-QTVG-II--NS-------ELLDQLPDGAYVLNLARGVHVQE  236 (315)
T ss_dssp             CCC--G-GGTT-CB--SH-------HHHTTSCTTEEEEECSCGGGBCH
T ss_pred             CCc--h-hhhh-hc--cH-------HHHhhCCCCCEEEECCCChhhhH
Confidence            321  1 1111 11  11       2234445889999986  44553

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=96.82  E-value=0.0018  Score=56.67  Aligned_cols=105  Identities=16%  Similarity=0.241  Sum_probs=66.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCC-chh-----hhhhhcccCCceEEEEecCCCHHHHh-----C
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGV-----TADISHMDTNAVVRGFLGQQQLEDAL-----T  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~~-~g~-----~~DL~~~~~~~~v~~~~~t~d~~~al-----~  113 (305)
                      ++++.|+||+|.+|..++..|+. .+.  .|++.|+++. ...     ..|+.+..            +.++.+     .
T Consensus         4 ~k~vlITGas~gIG~~~a~~l~~~~g~--~v~~~~~~~~~~~~~~~~~~~Dv~~~~------------~v~~~~~~~~~~   69 (244)
T 4e4y_A            4 MANYLVTGGSKGIGKAVVELLLQNKNH--TVINIDIQQSFSAENLKFIKADLTKQQ------------DITNVLDIIKNV   69 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTSTTE--EEEEEESSCCCCCTTEEEEECCTTCHH------------HHHHHHHHTTTC
T ss_pred             CCeEEEeCCCChHHHHHHHHHHhcCCc--EEEEeccccccccccceEEecCcCCHH------------HHHHHHHHHHhC
Confidence            45799999999999999999988 666  8899998752 111     12222211            122222     2


Q ss_pred             CCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                      ..|++|.+||.....   ..+   ....+..|+.....+.+.+.+.- ..+.|++++.
T Consensus        70 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS  127 (244)
T 4e4y_A           70 SFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGS  127 (244)
T ss_dssp             CEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECC
T ss_pred             CCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECC
Confidence            789999999974321   122   23456778877777777776553 2345666543

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.82  E-value=0.0085  Score=54.15  Aligned_cols=75  Identities=20%  Similarity=0.205  Sum_probs=45.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCCchhhhhhhcccC--CceEEEEecCCCHHHHhCCCCEEE
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~-L~D~~~~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      ..+++||+|+|++|.+|+.++..+...+-. +|+ .+|.+.......|+.....  ...+..   .+|+++.++++|+||
T Consensus         2 ~~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~-elva~~d~~~~~~~g~d~~~~~g~~~~~v~~---~~dl~~~l~~~DvVI   77 (273)
T 1dih_A            2 HDANIRVAIAGAGGRMGRQLIQAALALEGV-QLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFI   77 (273)
T ss_dssp             CCCBEEEEETTTTSHHHHHHHHHHHHSTTE-ECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEE
T ss_pred             CCCCcEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCchhhhhhhHHHHcCCCcCCcee---cCCHHHHhcCCCEEE
Confidence            345689999999999999999887755322 666 7887642111122222110  112222   245667788999999


Q ss_pred             Ec
Q 021932          120 IP  121 (305)
Q Consensus       120 i~  121 (305)
                      ..
T Consensus        78 Df   79 (273)
T 1dih_A           78 DF   79 (273)
T ss_dssp             EC
T ss_pred             Ec
Confidence            54

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.77  E-value=0.0026  Score=57.19  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~   39 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGA--RVAVLDKSA   39 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCH
Confidence            345899999999999999999999998  999999875

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.77  E-value=0.0092  Score=56.28  Aligned_cols=72  Identities=18%  Similarity=0.222  Sum_probs=45.2

Q ss_pred             CCEEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~-~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++||+|+||+|.+|..+.. .|..+++ ..+|+++-.+. .|...  .+.. ...+.... ..+. +.++++|+||.+.|
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s-~G~~v--~~~~-g~~i~~~~-~~~~-~~~~~~DvVf~a~g   74 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ-LGQAA--PSFG-GTTGTLQD-AFDL-EALKALDIIVTCQG   74 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBC--CGGG-TCCCBCEE-TTCH-HHHHTCSEEEECSC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCC-CCCCc--cccC-CCceEEEe-cCCh-HHhcCCCEEEECCC
Confidence            3699999999999999999 5655553 45888886653 44322  1111 11222221 2233 45789999999875

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.74  E-value=0.0039  Score=58.86  Aligned_cols=99  Identities=20%  Similarity=0.295  Sum_probs=63.6

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ....++|+|||. |.+|..+|..+...|.  +|..+|.......+.+   ..    +..    .++++.++.||+|+++.
T Consensus       173 ~l~gktvGIIGl-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~---~g----~~~----~~l~ell~~aDvV~l~~  238 (365)
T 4hy3_A          173 LIAGSEIGIVGF-GDLGKALRRVLSGFRA--RIRVFDPWLPRSMLEE---NG----VEP----ASLEDVLTKSDFIFVVA  238 (365)
T ss_dssp             CSSSSEEEEECC-SHHHHHHHHHHTTSCC--EEEEECSSSCHHHHHH---TT----CEE----CCHHHHHHSCSEEEECS
T ss_pred             ccCCCEEEEecC-CcccHHHHHhhhhCCC--EEEEECCCCCHHHHhh---cC----eee----CCHHHHHhcCCEEEEcC
Confidence            344569999998 9999999999887777  9999998642111111   11    111    25778999999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      ...  + +++. ++  |       .+.+....|.+++|+++  .++|.
T Consensus       239 Plt--~-~T~~-li--~-------~~~l~~mk~gailIN~aRG~~vde  273 (365)
T 4hy3_A          239 AVT--S-ENKR-FL--G-------AEAFSSMRRGAAFILLSRADVVDF  273 (365)
T ss_dssp             CSS--C-C----CC--C-------HHHHHTSCTTCEEEECSCGGGSCH
T ss_pred             cCC--H-HHHh-hc--C-------HHHHhcCCCCcEEEECcCCchhCH
Confidence            422  1 1111 11  1       12344456899999996  55664

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.74  E-value=0.0027  Score=56.09  Aligned_cols=35  Identities=23%  Similarity=0.245  Sum_probs=31.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (260)
T 2qq5_A            5 GQVCVVTGASRGIGRGIALQLCKAGA--TVYITGRHL   39 (260)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            34799999999999999999999998  899999875

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.74  E-value=0.0035  Score=58.44  Aligned_cols=94  Identities=24%  Similarity=0.306  Sum_probs=60.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ....++|+|||. |.+|..+|..+...|.  +|..+|.......+.   ...    +..    .++++.+++||+|+++.
T Consensus       162 ~l~g~tvgIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~---~~g----~~~----~~l~ell~~aDvV~l~~  227 (335)
T 2g76_A          162 ELNGKTLGILGL-GRIGREVATRMQSFGM--KTIGYDPIISPEVSA---SFG----VQQ----LPLEEIWPLCDFITVHT  227 (335)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSSCHHHHH---HTT----CEE----CCHHHHGGGCSEEEECC
T ss_pred             CCCcCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhh---hcC----cee----CCHHHHHhcCCEEEEec
Confidence            344569999998 9999999999988787  999999865322111   111    111    15678899999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ....   .++. ++  |    +   +.+....|.+++++++
T Consensus       228 P~t~---~t~~-li--~----~---~~l~~mk~gailIN~a  255 (335)
T 2g76_A          228 PLLP---STTG-LL--N----D---NTFAQCKKGVRVVNCA  255 (335)
T ss_dssp             CCCT---TTTT-SB--C----H---HHHTTSCTTEEEEECS
T ss_pred             CCCH---HHHH-hh--C----H---HHHhhCCCCcEEEECC
Confidence            4321   1111 11  1    1   2233445789999886

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.73  E-value=0.0025  Score=59.16  Aligned_cols=108  Identities=19%  Similarity=0.210  Sum_probs=67.0

Q ss_pred             cccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHH
Q 021932           32 GLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA  111 (305)
Q Consensus        32 ~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~a  111 (305)
                      -|.+..  +......++|+|||. |.+|..+|..+...|.  +|..+|.+.....     .   ......   ..++++.
T Consensus       125 ~W~~~~--~~~~l~gktvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~-----~---~~~~~~---~~~l~el  188 (324)
T 3evt_A          125 QWALPM--TTSTLTGQQLLIYGT-GQIGQSLAAKASALGM--HVIGVNTTGHPAD-----H---FHETVA---FTATADA  188 (324)
T ss_dssp             CSSCSS--CCCCSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSCCCCT-----T---CSEEEE---GGGCHHH
T ss_pred             CcccCC--CCccccCCeEEEECc-CHHHHHHHHHHHhCCC--EEEEECCCcchhH-----h---Hhhccc---cCCHHHH
Confidence            465432  123344569999999 9999999999998888  9999998652110     0   011111   2356788


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      +++||+|+++....  + +++. ++  |.       +.+....|.+++|+++  .++|.
T Consensus       189 l~~aDvV~l~lPlt--~-~t~~-li--~~-------~~l~~mk~gailIN~aRG~~vd~  234 (324)
T 3evt_A          189 LATANFIVNALPLT--P-TTHH-LF--ST-------ELFQQTKQQPMLINIGRGPAVDT  234 (324)
T ss_dssp             HHHCSEEEECCCCC--G-GGTT-CB--SH-------HHHHTCCSCCEEEECSCGGGBCH
T ss_pred             HhhCCEEEEcCCCc--h-HHHH-hc--CH-------HHHhcCCCCCEEEEcCCChhhhH
Confidence            99999999986321  1 1111 11  11       2234445889999986  44553

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.73  E-value=0.0021  Score=59.62  Aligned_cols=68  Identities=16%  Similarity=0.193  Sum_probs=48.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ...+||+|||. |.+|+.+|..+...|.  +|..+|++......  ....    .+..   . ++++.+++||+|+++..
T Consensus       153 l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~--~~~~----g~~~---~-~l~e~l~~aDvVi~~vp  219 (330)
T 2gcg_A          153 LTQSTVGIIGL-GRIGQAIARRLKPFGV--QRFLYTGRQPRPEE--AAEF----QAEF---V-STPELAAQSDFIVVACS  219 (330)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHGGGTC--CEEEEESSSCCHHH--HHTT----TCEE---C-CHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcchhH--HHhc----Ccee---C-CHHHHHhhCCEEEEeCC
Confidence            44569999999 9999999999988887  89999986522111  1111    1221   2 56788999999999874


Q ss_pred             C
Q 021932          124 V  124 (305)
Q Consensus       124 ~  124 (305)
                      .
T Consensus       220 ~  220 (330)
T 2gcg_A          220 L  220 (330)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.73  E-value=0.0059  Score=57.14  Aligned_cols=70  Identities=19%  Similarity=0.386  Sum_probs=47.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +||+|+||+|++|.-+...|..+++ ..|+.++.-....|+...+..    ..+.... . + .+.++++|+||++.|
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~----~~~~~~~-~-~-~~~~~~~Dvvf~a~~   72 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRG----QEIEVED-A-E-TADPSGLDIALFSAG   72 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETT----EEEEEEE-T-T-TSCCTTCSEEEECSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecC----CceEEEe-C-C-HHHhccCCEEEECCC
Confidence            5999999999999999998888843 348888876554444433221    2233211 1 2 245789999999875

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.72  E-value=0.0038  Score=57.42  Aligned_cols=94  Identities=22%  Similarity=0.253  Sum_probs=60.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ....++|+|||. |.+|..+|..+...|.  +|..+|.+.....+.++   .    +..    .++++.+++||+|+++.
T Consensus       139 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~~  204 (307)
T 1wwk_A          139 ELEGKTIGIIGF-GRIGYQVAKIANALGM--NILLYDPYPNEERAKEV---N----GKF----VDLETLLKESDVVTIHV  204 (307)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T----CEE----CCHHHHHHHCSEEEECC
T ss_pred             ccCCceEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHhhc---C----ccc----cCHHHHHhhCCEEEEec
Confidence            344569999998 9999999999998887  99999987632211111   1    111    14678899999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ....   +++. ++  |    .+   .+....|.+++++++
T Consensus       205 p~~~---~t~~-li--~----~~---~l~~mk~ga~lin~a  232 (307)
T 1wwk_A          205 PLVE---STYH-LI--N----EE---RLKLMKKTAILINTS  232 (307)
T ss_dssp             CCST---TTTT-CB--C----HH---HHHHSCTTCEEEECS
T ss_pred             CCCh---HHhh-hc--C----HH---HHhcCCCCeEEEECC
Confidence            4321   1111 11  1    11   223345789998886

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.72  E-value=0.0047  Score=59.49  Aligned_cols=91  Identities=19%  Similarity=0.114  Sum_probs=62.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch-hhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ..++|+|+|. |.+|..+|..|...|.  +|..+|+++... .+.+  +.     ...    .++++++++||+|+.+.+
T Consensus       210 ~GktVgIiG~-G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~A~~--~G-----~~~----~sL~eal~~ADVVilt~g  275 (436)
T 3h9u_A          210 AGKTACVCGY-GDVGKGCAAALRGFGA--RVVVTEVDPINALQAAM--EG-----YQV----LLVEDVVEEAHIFVTTTG  275 (436)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH--TT-----CEE----CCHHHHTTTCSEEEECSS
T ss_pred             cCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCChhhhHHHHH--hC-----Cee----cCHHHHHhhCCEEEECCC
Confidence            3469999998 9999999999998887  899999875211 1111  11     111    257899999999998765


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv  166 (305)
                      ...--+.                 +.+....|+++|++++++.
T Consensus       276 t~~iI~~-----------------e~l~~MK~gAIVINvgRg~  301 (436)
T 3h9u_A          276 NDDIITS-----------------EHFPRMRDDAIVCNIGHFD  301 (436)
T ss_dssp             CSCSBCT-----------------TTGGGCCTTEEEEECSSSG
T ss_pred             CcCccCH-----------------HHHhhcCCCcEEEEeCCCC
Confidence            3321111                 1233345889999998764

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.71  E-value=0.0056  Score=57.30  Aligned_cols=98  Identities=23%  Similarity=0.311  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ...++|+|||. |.+|+.+|..+...|.  +|..+|.........   . .    ...   ..++++.+++||+|+++..
T Consensus       171 l~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~---~-g----~~~---~~~l~ell~~sDvV~l~~P  236 (345)
T 4g2n_A          171 LTGRRLGIFGM-GRIGRAIATRARGFGL--AIHYHNRTRLSHALE---E-G----AIY---HDTLDSLLGASDIFLIAAP  236 (345)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHH---T-T----CEE---CSSHHHHHHTCSEEEECSC
T ss_pred             cCCCEEEEEEe-ChhHHHHHHHHHHCCC--EEEEECCCCcchhhh---c-C----CeE---eCCHHHHHhhCCEEEEecC
Confidence            44569999998 9999999999998887  999999865221111   1 1    111   1367889999999999864


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      ..  + +++. ++  |    +   +.+....|.+++|+++  ..+|.
T Consensus       237 lt--~-~T~~-li--~----~---~~l~~mk~gailIN~aRG~~vde  270 (345)
T 4g2n_A          237 GR--P-ELKG-FL--D----H---DRIAKIPEGAVVINISRGDLIND  270 (345)
T ss_dssp             CC--G-GGTT-CB--C----H---HHHHHSCTTEEEEECSCGGGBCH
T ss_pred             CC--H-HHHH-Hh--C----H---HHHhhCCCCcEEEECCCCchhCH
Confidence            21  1 1111 11  1    1   2234445889999996  45554

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.70  E-value=0.013  Score=54.71  Aligned_cols=99  Identities=15%  Similarity=0.210  Sum_probs=58.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---Cchhhhhhhcc--cCCceEEEEecCCCHHHHh-CCCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHM--DTNAVVRGFLGQQQLEDAL-TGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~--~~~~~v~~~~~t~d~~~al-~~aDiVI  119 (305)
                      |+||+|+||+|.+|..+...|..++.. |+..+...+   ..|+...-.+.  .....+.... ..+. +++ +++|+||
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~-el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~-~~~~-~~~~~~~Dvvf   80 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHM-NITALTVSAQSNDAGKLISDLHPQLKGIVELPLQP-MSDI-SEFSPGVDVVF   80 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEE-ESSG-GGTCTTCSEEE
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCC-cEEEEEecCchhhcCCchHHhCccccCccceeEec-cCCH-HHHhcCCCEEE
Confidence            479999999999999999998887654 777765433   33432221111  1011222211 0033 456 8999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNP  165 (305)
                      ++.+                ...-+++++.+.+.  .+.+|-.|.+
T Consensus        81 ~a~p----------------~~~s~~~~~~~~~~--g~~vIDlSa~  108 (337)
T 3dr3_A           81 LATA----------------HEVSHDLAPQFLEA--GCVVFDLSGA  108 (337)
T ss_dssp             ECSC----------------HHHHHHHHHHHHHT--TCEEEECSST
T ss_pred             ECCC----------------hHHHHHHHHHHHHC--CCEEEEcCCc
Confidence            9864                12345555555544  3466666666

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.69  E-value=0.012  Score=51.23  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC----------CCHHHHhCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----------QQLEDALTG  114 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t----------~d~~~al~~  114 (305)
                      +.+++.|+||+|.+|..++..|+. +.  .|+++|+++....  ++.+.   ..+..+...          .+..+.+..
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~--~v~~~~r~~~~~~--~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~   75 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DH--IVYALGRNPEHLA--ALAEI---EGVEPIESDIVKEVLEEGGVDKLKNLDH   75 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TS--EEEEEESCHHHHH--HHHTS---TTEEEEECCHHHHHHTSSSCGGGTTCSC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CC--eEEEEeCCHHHHH--HHHhh---cCCcceecccchHHHHHHHHHHHHhcCC
Confidence            345899999999999999999976 65  8999998652111  11110   011111100          011123457


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          115 MDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       115 aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      .|++|.+||......   .+   ....+..|+..    .+.+.+.+.+..  +.|++++.
T Consensus        76 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS  133 (245)
T 3e9n_A           76 VDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINS  133 (245)
T ss_dssp             CSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC-
T ss_pred             CCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcC
Confidence            899999999753221   11   12344556544    555566665543  55665554

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.69  E-value=0.00028  Score=63.55  Aligned_cols=64  Identities=9%  Similarity=0.119  Sum_probs=36.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEE-EEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el-~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +|||+|||+ |.+|..++..|... +  +| .++|+++..  ...+.... ..   .   .++++++++++|+||++.
T Consensus         2 ~m~I~iIG~-G~mG~~la~~l~~~-~--~v~~v~~~~~~~--~~~~~~~~-g~---~---~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            2 SLVLNFVGT-GTLTRFFLECLKDR-Y--EIGYILSRSIDR--ARNLAEVY-GG---K---AATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             --CCEEESC-CHHHHHHHHTTC-------CCCEECSSHHH--HHHHHHHT-CC---C---CCSSCCCCC---CEEECS
T ss_pred             CceEEEEeC-CHHHHHHHHHHHHc-C--cEEEEEeCCHHH--HHHHHHHc-CC---c---cCCHHHHHhcCCEEEEeC
Confidence            468999998 99999999888766 4  77 489986521  11122110 11   1   234556688999999986

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.67  E-value=0.0023  Score=60.06  Aligned_cols=79  Identities=15%  Similarity=0.108  Sum_probs=49.3

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      +-..+.||+|+||+|.+|.-+..+|..++.. ||.++......|+..+-.+......+...  ..|.++.+.++|+||++
T Consensus         9 ~~~~~~~V~IvGAtG~vG~ellrlL~~hP~~-el~~l~S~~~aG~~~~~~~p~~~~~l~~~--~~~~~~~~~~~Dvvf~a   85 (351)
T 1vkn_A            9 HHHHMIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILS--EFDPEKVSKNCDVLFTA   85 (351)
T ss_dssp             ---CCEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCB--CCCHHHHHHHCSEEEEC
T ss_pred             cccceeEEEEECCCCHHHHHHHHHHHcCCCc-EEEEEeCcccccCChHHhChhhccCceEE--eCCHHHhhcCCCEEEEC
Confidence            3455779999999999999999999988754 88888764444443331111101122221  12433323889999998


Q ss_pred             CC
Q 021932          122 AG  123 (305)
Q Consensus       122 ag  123 (305)
                      .+
T Consensus        86 lp   87 (351)
T 1vkn_A           86 LP   87 (351)
T ss_dssp             CS
T ss_pred             CC
Confidence            75

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.63  E-value=0.003  Score=59.14  Aligned_cols=100  Identities=21%  Similarity=0.296  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ....++|+|||. |.+|+.+|..+...|.  +|..+|.........++   .    +..   ..++++.++.||+|+++.
T Consensus       165 ~l~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~---~~~l~ell~~aDvV~l~~  231 (347)
T 1mx3_A          165 RIRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERAL---G----LQR---VSTLQDLLFHSDCVTLHC  231 (347)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHH---T----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhHhhc---C----Cee---cCCHHHHHhcCCEEEEcC
Confidence            344569999998 9999999999988887  99999986532221111   1    111   125678899999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      ....   .++. ++  |    +   +.+....|.+++|+++  .++|.
T Consensus       232 P~t~---~t~~-li--~----~---~~l~~mk~gailIN~arg~~vd~  266 (347)
T 1mx3_A          232 GLNE---HNHH-LI--N----D---FTVKQMRQGAFLVNTARGGLVDE  266 (347)
T ss_dssp             CCCT---TCTT-SB--S----H---HHHTTSCTTEEEEECSCTTSBCH
T ss_pred             CCCH---HHHH-Hh--H----H---HHHhcCCCCCEEEECCCChHHhH
Confidence            4321   1111 11  1    1   2233345788999886  44543

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.62  E-value=0.0037  Score=58.63  Aligned_cols=100  Identities=23%  Similarity=0.290  Sum_probs=64.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      ....++|+|||. |.+|..+|..|...|.  +|..+|.+.. ...+.++.       +..   ..++++.+++||+|+++
T Consensus       161 ~l~gktvGIIG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~  227 (351)
T 3jtm_A          161 DLEGKTIGTVGA-GRIGKLLLQRLKPFGC--NLLYHDRLQMAPELEKETG-------AKF---VEDLNEMLPKCDVIVIN  227 (351)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHGGGCC--EEEEECSSCCCHHHHHHHC-------CEE---CSCHHHHGGGCSEEEEC
T ss_pred             cccCCEEeEEEe-CHHHHHHHHHHHHCCC--EEEEeCCCccCHHHHHhCC-------CeE---cCCHHHHHhcCCEEEEC
Confidence            345569999998 9999999999988887  8999998652 11111111       111   13578999999999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      ....  + +++. ++  |    .   +.+....|.+++|+++  .++|.
T Consensus       228 ~Plt--~-~t~~-li--~----~---~~l~~mk~gailIN~aRG~~vde  263 (351)
T 3jtm_A          228 MPLT--E-KTRG-MF--N----K---ELIGKLKKGVLIVNNARGAIMER  263 (351)
T ss_dssp             SCCC--T-TTTT-CB--S----H---HHHHHSCTTEEEEECSCGGGBCH
T ss_pred             CCCC--H-HHHH-hh--c----H---HHHhcCCCCCEEEECcCchhhCH
Confidence            6422  1 1111 11  2    1   2233345889999986  45554

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.62  E-value=0.0041  Score=55.29  Aligned_cols=113  Identities=15%  Similarity=0.077  Sum_probs=66.8

Q ss_pred             CEEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe-cCCC---HHHHhC-------
Q 021932           47 FKVAVLGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQ---LEDALT-------  113 (305)
Q Consensus        47 ~KI~IIGa--aG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~t~d---~~~al~-------  113 (305)
                      +++.|+||  +|.+|..++..|+..|.  +|++.|+++... ..++.+.. ..++..+. .-+|   .++.++       
T Consensus         8 k~vlVTGa~~s~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (269)
T 2h7i_A            8 KRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRLRL-IQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAIG   83 (269)
T ss_dssp             CEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEECSCHHH-HHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCchHHHHHHHHHHCCC--EEEEEecChHHH-HHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHHHHhC
Confidence            57999998  89999999999999998  899999875211 01111110 01111111 1112   222232       


Q ss_pred             ---CCCEEEEcCCCCCC------C--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          114 ---GMDIVIIPAGVPRK------P--GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       114 ---~aDiVIi~ag~~~~------~--g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                         ..|++|.+||....      +  ..+   ....+..|+.....+.+.+.++- ..+.|+++|
T Consensus        84 ~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  148 (269)
T 2h7i_A           84 AGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD  148 (269)
T ss_dssp             TTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence               78999999996531      1  112   23346678777777777776553 235566554

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.62  E-value=0.0028  Score=58.37  Aligned_cols=62  Identities=21%  Similarity=0.234  Sum_probs=47.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ....++|+|||. |.+|..+|..+...|.  +|..+|.+.....      .      .    ..++++.++.||+|+++.
T Consensus       141 ~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~------~------~----~~~l~ell~~aDvV~l~~  201 (311)
T 2cuk_A          141 DLQGLTLGLVGM-GRIGQAVAKRALAFGM--RVVYHARTPKPLP------Y------P----FLSLEELLKEADVVSLHT  201 (311)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSS------S------C----BCCHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEEEE-CHHHHHHHHHHHHCCC--EEEEECCCCcccc------c------c----cCCHHHHHhhCCEEEEeC
Confidence            344569999998 9999999999998887  9999998652111      0      0    125678899999999986


Q ss_pred             C
Q 021932          123 G  123 (305)
Q Consensus       123 g  123 (305)
                      .
T Consensus       202 p  202 (311)
T 2cuk_A          202 P  202 (311)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=96.61  E-value=0.0064  Score=59.32  Aligned_cols=116  Identities=18%  Similarity=0.153  Sum_probs=72.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-----chhhhhhhcccCCceEEEEecC-CC---HHHHhCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTNAVVRGFLGQ-QQ---LEDALTG  114 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-----~g~~~DL~~~~~~~~v~~~~~t-~d---~~~al~~  114 (305)
                      .+..+|.|+||+|.+|..++..|+..|. ..|++++++..     .....+|...  ..++..+... +|   +++.++.
T Consensus       224 ~~~~~vLITGgtGgIG~~la~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dv~d~~~v~~~~~~  300 (486)
T 2fr1_A          224 KPTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELLGG  300 (486)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCC-CEEEEEcCCCCCcHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHHH
Confidence            3456899999999999999999998886 25899998652     1112233332  2334432211 22   3344555


Q ss_pred             C------CEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Q 021932          115 M------DIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (305)
Q Consensus       115 a------DiVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~I~~~~p~aiviv~  162 (305)
                      .      |.||.+||......   .+.   ...+..|+.....+.+.+.+...+.+|++.
T Consensus       301 i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~S  360 (486)
T 2fr1_A          301 IGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFS  360 (486)
T ss_dssp             SCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred             HHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEc
Confidence            4      99999999754321   122   234566888888888887765444444443

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=96.61  E-value=0.014  Score=51.50  Aligned_cols=115  Identities=13%  Similarity=0.142  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcccCCceEEEEec-CCC---HHHH----
Q 021932           45 PGFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTNAVVRGFLG-QQQ---LEDA----  111 (305)
Q Consensus        45 ~~~KI~IIGaa--G~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a----  111 (305)
                      +.+++.|+||+  |.+|..++..|+..|.  .++++|.+..   .....++.... ..++..+.. -+|   .++.    
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~   95 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGA--AVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVDSYESCEKLVKDV   95 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSC--EEEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCC--eEEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCCCHHHHHHHHHHH
Confidence            34589999998  7999999999999998  8999988752   22233333211 112222110 112   2222    


Q ss_pred             ---hCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932          112 ---LTGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       112 ---l~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t  163 (305)
                         +...|++|.+||......   .+   ....+..|+.    +.+.+.+.+.+... +.|++++
T Consensus        96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~is  159 (267)
T 3gdg_A           96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGT-GSLVITA  159 (267)
T ss_dssp             HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEC
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCC-ceEEEEc
Confidence               236799999999753221   12   2334555654    44445555555544 4455554

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.60  E-value=0.015  Score=51.80  Aligned_cols=36  Identities=25%  Similarity=0.410  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.+++.|+||+|.+|..++..|++.|.  +|+++|++.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~   64 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL--GVVIADLAA   64 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            345899999999999999999999998  899999875

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.60  E-value=0.0053  Score=55.44  Aligned_cols=79  Identities=16%  Similarity=0.167  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEc
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~  121 (305)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++..  ...+.++........+.. .....+.++.++++|+||.+
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~  195 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTA  195 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEEC
Confidence            345899999779999999999999997  7999998752  222233322110011111 11112345678899999999


Q ss_pred             CCCC
Q 021932          122 AGVP  125 (305)
Q Consensus       122 ag~~  125 (305)
                      +|..
T Consensus       196 ag~g  199 (287)
T 1lu9_A          196 GAIG  199 (287)
T ss_dssp             CCTT
T ss_pred             CCcc
Confidence            9754

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.60  E-value=0.0071  Score=53.29  Aligned_cols=112  Identities=17%  Similarity=0.160  Sum_probs=63.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCC---HHHH-------hC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQ---LEDA-------LT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d---~~~a-------l~  113 (305)
                      +++.|+||+|.+|..++..|+..|....|+++++++.  .....++.     .++..+.. -+|   .++.       +.
T Consensus         3 k~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG-----DRFFYVVGDITEDSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHG-----GGEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhC-----CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4789999999999999999988763338888888652  11111111     11221111 112   2222       23


Q ss_pred             CCCEEEEcCCCCCC--C--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecCC
Q 021932          114 GMDIVIIPAGVPRK--P--GMTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISNP  165 (305)
Q Consensus       114 ~aDiVIi~ag~~~~--~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tNP  165 (305)
                      ..|++|.+||....  +  ..+.   ...+..|+.    +.+.+.+.+.+..  +.|+++|.-
T Consensus        78 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~  138 (254)
T 3kzv_A           78 KIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSD  138 (254)
T ss_dssp             CCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCS
T ss_pred             CccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCc
Confidence            78999999997422  1  1122   234555654    4444455556543  566666543

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=96.60  E-value=0.0062  Score=57.00  Aligned_cols=74  Identities=16%  Similarity=0.187  Sum_probs=44.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCCchhhhhhhcccC--------CceEEEEecCCCHHHHhCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDT--------NAVVRGFLGQQQLEDALTGMD  116 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~-D~~~~~g~~~DL~~~~~--------~~~v~~~~~t~d~~~al~~aD  116 (305)
                      ++||+|+||+|.+|..++..|..++.. ||+.+ |.....|...+-.|...        ...+.. . ..|. +.++++|
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~d~-~~~~~vD   79 (350)
T 2ep5_A            4 KIKVSLLGSTGMVGQKMVKMLAKHPYL-ELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPI-V-STNY-EDHKDVD   79 (350)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBE-E-CSSG-GGGTTCS
T ss_pred             CcEEEEECcCCHHHHHHHHHHHhCCCc-EEEEEecChhhcCCCHHHhcCcccccccccCCceeEE-e-eCCH-HHhcCCC
Confidence            579999998899999999988776643 77666 33222222222111100        011222 1 1233 4568999


Q ss_pred             EEEEcCC
Q 021932          117 IVIIPAG  123 (305)
Q Consensus       117 iVIi~ag  123 (305)
                      +||++.|
T Consensus        80 vVf~atp   86 (350)
T 2ep5_A           80 VVLSALP   86 (350)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999864

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.57  E-value=0.0062  Score=55.26  Aligned_cols=97  Identities=20%  Similarity=0.180  Sum_probs=63.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ...++|+|+|+ |.+|..++..+...|.  +|..+|++.....  .+...  ....  .. ..++++.++++|+|+++..
T Consensus       153 l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~--g~~~--~~-~~~l~~~l~~aDvVi~~~p  222 (293)
T 3d4o_A          153 IHGANVAVLGL-GRVGMSVARKFAALGA--KVKVGARESDLLA--RIAEM--GMEP--FH-ISKAAQELRDVDVCINTIP  222 (293)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHHH--HHHHT--TSEE--EE-GGGHHHHTTTCSEEEECCS
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHC--CCee--cC-hhhHHHHhcCCCEEEECCC
Confidence            34569999998 9999999999998887  9999998642111  11111  1111  11 1356788999999999874


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec-CCCCc
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNS  168 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t-NPvd~  168 (305)
                      .    ++     +  |.       +.+....|.+++++++ +|.++
T Consensus       223 ~----~~-----i--~~-------~~l~~mk~~~~lin~ar~~~~~  250 (293)
T 3d4o_A          223 A----LV-----V--TA-------NVLAEMPSHTFVIDLASKPGGT  250 (293)
T ss_dssp             S----CC-----B--CH-------HHHHHSCTTCEEEECSSTTCSB
T ss_pred             h----HH-----h--CH-------HHHHhcCCCCEEEEecCCCCCC
Confidence            2    21     1  11       1233345789999987 77765

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=96.56  E-value=0.013  Score=47.51  Aligned_cols=84  Identities=11%  Similarity=0.109  Sum_probs=54.2

Q ss_pred             CCEEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaa---G~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +.+|+|||++   |.+|..++..|...|+  +  ++++++....   +.      .+..+   .++.+..+++|+++++.
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~--~--V~~vnp~~~~---i~------G~~~~---~s~~el~~~vDlvii~v   77 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLSKGF--E--VLPVNPNYDE---IE------GLKCY---RSVRELPKDVDVIVFVV   77 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--E--EEEECTTCSE---ET------TEECB---SSGGGSCTTCCEEEECS
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHHCCC--E--EEEeCCCCCe---EC------Ceeec---CCHHHhCCCCCEEEEEe
Confidence            4599999986   8999999999999998  6  4555442111   11      12221   24545556899999985


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv  161 (305)
                      .                .+.+.++++++.+.+..++++.
T Consensus        78 p----------------~~~v~~v~~~~~~~g~~~i~~~  100 (138)
T 1y81_A           78 P----------------PKVGLQVAKEAVEAGFKKLWFQ  100 (138)
T ss_dssp             C----------------HHHHHHHHHHHHHTTCCEEEEC
T ss_pred             C----------------HHHHHHHHHHHHHcCCCEEEEc
Confidence            2                2446666666666677775543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.52  E-value=0.015  Score=51.55  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=30.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .||.|+|+ |.+|+.++..|+..|. .+|.++|.+.
T Consensus        32 ~~VlVvG~-Gg~G~~va~~La~~Gv-~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CeEEEEee-CHHHHHHHHHHHHcCC-CeEEEEcCCC
Confidence            48999999 9999999999999886 4999999875

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.50  E-value=0.0043  Score=61.25  Aligned_cols=66  Identities=26%  Similarity=0.314  Sum_probs=48.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ...++|+|||. |.+|+.+|..|...|.  +|+.+|.......+.++.       +..   . ++++.+++||+|+++..
T Consensus       140 l~g~~vgIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g-------~~~---~-~l~e~~~~aDvV~l~~P  205 (529)
T 1ygy_A          140 IFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL---L-SLDDLLARADFISVHLP  205 (529)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE---C-CHHHHHHHCSEEEECCC
T ss_pred             cCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------cEE---c-CHHHHHhcCCEEEECCC
Confidence            34569999998 9999999999998887  999999865322222111       111   1 46788999999999864

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.46  E-value=0.052  Score=48.34  Aligned_cols=115  Identities=19%  Similarity=0.239  Sum_probs=69.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe-cCCCH---HHH--hCCCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQQL---EDA--LTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~t~d~---~~a--l~~aDiVI  119 (305)
                      -+.+.|+||++-+|..+|..|++.|.  .|++.|++..+..+.++....  .+...+. .-+|.   ++.  ...-|++|
T Consensus         9 GKvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iDiLV   84 (247)
T 4hp8_A            9 GRKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAPDETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFDILV   84 (247)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence            34677889999999999999999998  999999976432222233221  1222211 11121   111  13579999


Q ss_pred             EcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          120 IPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       120 i~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..||......   .+   ....+..|+.    ..+..++.+.+.+..+-||+++.
T Consensus        85 NNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS  139 (247)
T 4hp8_A           85 NNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIAS  139 (247)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             ECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            9999754321   12   2334555654    45666777777766677777753

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.45  E-value=0.0054  Score=56.30  Aligned_cols=71  Identities=14%  Similarity=0.228  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ..++|+|||+ |.+|..++..|... ++ .+|.++|+++.+.  .++.... ...+..   ..+++++++++|+||++..
T Consensus       134 ~~~~igiIG~-G~~g~~~a~~l~~~~g~-~~V~v~dr~~~~~--~~l~~~~-~~~~~~---~~~~~e~v~~aDiVi~atp  205 (312)
T 2i99_A          134 SSEVLCILGA-GVQAYSHYEIFTEQFSF-KEVRIWNRTKENA--EKFADTV-QGEVRV---CSSVQEAVAGADVIITVTL  205 (312)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHHCCC-SEEEEECSSHHHH--HHHHHHS-SSCCEE---CSSHHHHHTTCSEEEECCC
T ss_pred             CCcEEEEECC-cHHHHHHHHHHHHhCCC-cEEEEEcCCHHHH--HHHHHHh-hCCeEE---eCCHHHHHhcCCEEEEEeC
Confidence            4569999998 99999999888765 53 5899999875221  1222110 002332   2467889999999999853

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.45  E-value=0.0043  Score=56.99  Aligned_cols=90  Identities=22%  Similarity=0.214  Sum_probs=59.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ....++|+|||. |.+|..+|..+...|.  +|..+|.+.. .   +   ..     .   ...++++.++.||+|+++.
T Consensus       121 ~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~dr~~~-~---~---~~-----~---~~~~l~ell~~aDvV~l~~  182 (303)
T 1qp8_A          121 LIQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPK-E---G---PW-----R---FTNSLEEALREARAAVCAL  182 (303)
T ss_dssp             CCTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCC-C---S---SS-----C---CBSCSHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcc-c---c---Cc-----c---cCCCHHHHHhhCCEEEEeC
Confidence            345569999998 9999999999998887  9999998643 1   1   10     0   1124678899999999986


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ....   +++. ++  |    .   +.+....|.+++++++
T Consensus       183 P~~~---~t~~-~i--~----~---~~l~~mk~gailin~s  210 (303)
T 1qp8_A          183 PLNK---HTRG-LV--K----Y---QHLALMAEDAVFVNVG  210 (303)
T ss_dssp             CCST---TTTT-CB--C----H---HHHTTSCTTCEEEECS
T ss_pred             cCch---HHHH-Hh--C----H---HHHhhCCCCCEEEECC
Confidence            4321   1111 11  1    1   2233345789999986

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.43  E-value=0.011  Score=56.89  Aligned_cols=91  Identities=18%  Similarity=0.219  Sum_probs=61.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch-hhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ..++|+|+|. |.+|..+|..+...|.  +|+.+|+++... .+.  .+.     ...    .+++++++++|+|+.+.|
T Consensus       219 ~GktV~ViG~-G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A~--~~G-----~~v----~~Leeal~~ADIVi~atg  284 (435)
T 3gvp_A          219 GGKQVVVCGY-GEVGKGCCAALKAMGS--IVYVTEIDPICALQAC--MDG-----FRL----VKLNEVIRQVDIVITCTG  284 (435)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH--HTT-----CEE----CCHHHHTTTCSEEEECSS
T ss_pred             cCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEeCChhhhHHHH--HcC-----CEe----ccHHHHHhcCCEEEECCC
Confidence            3459999999 9999999999998887  899999875211 111  111     111    246789999999999754


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv  166 (305)
                      .+   +.-       |    .+   .+....|.+++++++.+-
T Consensus       285 t~---~lI-------~----~e---~l~~MK~gailINvgrg~  310 (435)
T 3gvp_A          285 NK---NVV-------T----RE---HLDRMKNSCIVCNMGHSN  310 (435)
T ss_dssp             CS---CSB-------C----HH---HHHHSCTTEEEEECSSTT
T ss_pred             Cc---ccC-------C----HH---HHHhcCCCcEEEEecCCC
Confidence            32   111       1    11   223335789999998663

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=96.41  E-value=0.0074  Score=55.66  Aligned_cols=73  Identities=18%  Similarity=0.196  Sum_probs=51.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      .++|+|||+ |.+|...+..|.......+|.++|++.+...+.++.... ...+..   . ++++++++||+||.+...
T Consensus       121 ~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~-g~~~~~---~-~~~eav~~aDIVi~aT~s  193 (313)
T 3hdj_A          121 SSVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRC-GVPARM---A-APADIAAQADIVVTATRS  193 (313)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHH-TSCEEE---C-CHHHHHHHCSEEEECCCC
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhc-CCeEEE---e-CHHHHHhhCCEEEEccCC
Confidence            458999998 999999998877643357999999984333344444321 122332   2 678999999999998643

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.40  E-value=0.0032  Score=59.18  Aligned_cols=73  Identities=15%  Similarity=0.251  Sum_probs=44.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCC----ceEEEEecCCCHHHHhCCCCEEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTN----AVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~----~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      +++||+|+||+|.+|..++..|..++.. ||+.+......+...+-.|....    ..+..    .+ ++.++++|+||+
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~----~~-~~~~~~vDvVf~   88 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHF-QVTLMTADRKAGQSMESVFPHLRAQKLPTLVS----VK-DADFSTVDAVFC   88 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSE-EEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC----GG-GCCGGGCSEEEE
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCc-EEEEEeCchhcCCCHHHhCchhcCccccccee----cc-hhHhcCCCEEEE
Confidence            3479999998899999999999887654 66666433323332222221110    11111    11 344578999999


Q ss_pred             cCC
Q 021932          121 PAG  123 (305)
Q Consensus       121 ~ag  123 (305)
                      +.|
T Consensus        89 atp   91 (359)
T 1xyg_A           89 CLP   91 (359)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            875

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=96.40  E-value=0.011  Score=55.37  Aligned_cols=75  Identities=17%  Similarity=0.282  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ..++|+|||+ |.+|...+..|....-..+|.++|++..  +..+.++... ....+..   ..+++++++++|+||.+.
T Consensus       128 ~~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~-~g~~~~~---~~~~~eav~~aDiVi~aT  202 (350)
T 1x7d_A          128 NARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY-SGLTIRR---ASSVAEAVKGVDIITTVT  202 (350)
T ss_dssp             TCCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC-TTCEEEE---CSSHHHHHTTCSEEEECC
T ss_pred             cCCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc-cCceEEE---eCCHHHHHhcCCEEEEec
Confidence            3459999998 9999998877654323469999999762  2223333221 0112332   246788999999999986


Q ss_pred             CC
Q 021932          123 GV  124 (305)
Q Consensus       123 g~  124 (305)
                      ..
T Consensus       203 ps  204 (350)
T 1x7d_A          203 AD  204 (350)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.39  E-value=0.0091  Score=55.88  Aligned_cols=32  Identities=38%  Similarity=0.610  Sum_probs=26.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY   78 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~   78 (305)
                      ++||+|+||+|.+|..++..|..++.. ||+.+
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p~~-ev~~i   39 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHPMF-ELTAL   39 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSE-EEEEE
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCCCC-EEEEE
Confidence            469999998899999999988776643 77666

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.36  E-value=0.0047  Score=58.86  Aligned_cols=75  Identities=24%  Similarity=0.208  Sum_probs=49.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCC-cEEEEEeCCCC--chhhhhhhcccCCceEEEE--ec--CCCHHHHhCC--CCE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLV-SVLHLYDVVNT--PGVTADISHMDTNAVVRGF--LG--QQQLEDALTG--MDI  117 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~-~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~--~~--t~d~~~al~~--aDi  117 (305)
                      +||+|+|| |.+|..++..|++.+.. .+|++.|++..  ...+.++.... ...+...  ..  ..++++.+++  +|+
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            59999999 99999999999988743 59999999762  22233333210 0112211  11  1245566666  899


Q ss_pred             EEEcCC
Q 021932          118 VIIPAG  123 (305)
Q Consensus       118 VIi~ag  123 (305)
                      ||.+++
T Consensus        80 Vin~ag   85 (405)
T 4ina_A           80 VLNIAL   85 (405)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            999986

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=96.36  E-value=0.021  Score=49.68  Aligned_cols=115  Identities=18%  Similarity=0.137  Sum_probs=67.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-C--CchhhhhhhcccCCceEEEEec-CCCH---HHHhC------
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTNAVVRGFLG-QQQL---EDALT------  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~-~--~~g~~~DL~~~~~~~~v~~~~~-t~d~---~~al~------  113 (305)
                      +++.|+||+|.+|..++..|+..|.  .|++++.. .  ......++...  ...+..+.. -+|.   ++.++      
T Consensus         8 k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (255)
T 3icc_A            8 KVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSN--GGSAFSIGANLESLHGVEALYSSLDNEL   83 (255)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCSHHHHHHHHHHHHT--TCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhc--CCceEEEecCcCCHHHHHHHHHHHHHHh
Confidence            4799999999999999999999998  88886543 3  22223333332  122222211 1121   11111      


Q ss_pred             -------CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 021932          114 -------GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (305)
Q Consensus       114 -------~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNP  165 (305)
                             ..|++|.+||......   .+   ....+..|+.....+.+.+.+.- +.+.|+++|..
T Consensus        84 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~  149 (255)
T 3icc_A           84 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSA  149 (255)
T ss_dssp             HHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCG
T ss_pred             cccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCCh
Confidence                   2899999999743211   11   23345677777777777666542 34567766643

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.35  E-value=0.028  Score=50.20  Aligned_cols=113  Identities=17%  Similarity=0.263  Sum_probs=70.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC----------HHHHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ----------LEDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d----------~~~al  112 (305)
                      .+.+.|+||++-+|..+|..|+..|.  .|+++|+++  ++..+.++....  .++..+.. -+|          ..+.+
T Consensus         7 gKvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            7 NKVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            44788999999999999999999998  999999976  333334444321  12222111 112          12334


Q ss_pred             CCCCEEEEcCCCCC--CC--CCc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 021932          113 TGMDIVIIPAGVPR--KP--GMT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~--~~--g~~---r~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ..-|++|..||...  .+  ..+   ....+..|+    -..+..++.+.+.. .+.||+++
T Consensus        83 G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnis  143 (254)
T 4fn4_A           83 SRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTA  143 (254)
T ss_dssp             SCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEe
Confidence            68999999999642  22  112   223444554    45677777777665 46666665

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=96.35  E-value=0.0089  Score=52.32  Aligned_cols=57  Identities=25%  Similarity=0.393  Sum_probs=42.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEE-EEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHh-CCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el-~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi~ag  123 (305)
                      |||+|||+ |.+|..++..|...++  +| .++|.++ ..  .+           .+   +|+++.+ .++|+||++.+
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~~~g~--~lv~v~d~~~-~~--~~-----------~~---~~~~~l~~~~~DvVv~~~~   59 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLERNGF--EIAAILDVRG-EH--EK-----------MV---RGIDEFLQREMDVAVEAAS   59 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEECSSC-CC--TT-----------EE---SSHHHHTTSCCSEEEECSC
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCC--EEEEEEecCc-ch--hh-----------hc---CCHHHHhcCCCCEEEECCC
Confidence            58999998 9999999998887777  77 6888864 11  10           11   3676777 69999999864

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.34  E-value=0.0066  Score=57.55  Aligned_cols=117  Identities=26%  Similarity=0.240  Sum_probs=68.6

Q ss_pred             cccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCce-----EEEE---
Q 021932           32 GLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAV-----VRGF---  102 (305)
Q Consensus        32 ~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~-----v~~~---  102 (305)
                      +|+-+.+.. ...++.||+|+|+ |.+|...+..+...|.  +|..+|++.. ...+.++.-......     ....   
T Consensus       171 ~~~~l~~~~-~~v~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~  246 (381)
T 3p2y_A          171 FVPMLTTAA-GTVKPASALVLGV-GVAGLQALATAKRLGA--KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARE  246 (381)
T ss_dssp             CSSCEECSS-CEECCCEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSGGGHHHHHHTTCEECCCC------------
T ss_pred             hhhhhhccc-CCcCCCEEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhh
Confidence            344333333 4567789999999 9999999999988887  8999999762 222222210000000     0000   


Q ss_pred             -------ecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          103 -------LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       103 -------~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                             ....++++.++++|+||.++..|.+... .  ++      .++.++   .-.|.++|+.++-
T Consensus       247 ~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap-~--Lv------t~emv~---~MkpGsVIVDvA~  303 (381)
T 3p2y_A          247 LSEAERAQQQQALEDAITKFDIVITTALVPGRPAP-R--LV------TAAAAT---GMQPGSVVVDLAG  303 (381)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCSEEEECCCCTTSCCC-C--CB------CHHHHH---TSCTTCEEEETTG
T ss_pred             hhHHHHhhhHHHHHHHHhcCCEEEECCCCCCcccc-e--ee------cHHHHh---cCCCCcEEEEEeC
Confidence                   0112567889999999998876632211 0  11      123333   3347888888763

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.34  E-value=0.0039  Score=56.13  Aligned_cols=70  Identities=13%  Similarity=0.226  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      +.+||+|||+ |.+|..++..|...|.  +|.++|++..+  +.++....   .+..   ..++++.++++|+||.+.+.
T Consensus       128 ~~~~v~iiGa-G~~g~aia~~L~~~g~--~V~v~~r~~~~--~~~l~~~~---g~~~---~~~~~~~~~~aDiVi~atp~  196 (275)
T 2hk9_A          128 KEKSILVLGA-GGASRAVIYALVKEGA--KVFLWNRTKEK--AIKLAQKF---PLEV---VNSPEEVIDKVQVIVNTTSV  196 (275)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSHHH--HHHHTTTS---CEEE---CSCGGGTGGGCSEEEECSST
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHcCC--EEEEEECCHHH--HHHHHHHc---CCee---ehhHHhhhcCCCEEEEeCCC
Confidence            3469999998 9999999999998887  99999986422  22222211   1222   12566788999999999764


Q ss_pred             C
Q 021932          125 P  125 (305)
Q Consensus       125 ~  125 (305)
                      .
T Consensus       197 ~  197 (275)
T 2hk9_A          197 G  197 (275)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.32  E-value=0.016  Score=52.88  Aligned_cols=62  Identities=29%  Similarity=0.416  Sum_probs=32.4

Q ss_pred             hhCCCcccccccccccccccc-CCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           18 HLHPPTLQIEGESSGLGRMDC-RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      |-|.+|+|-+-.- .++.+-- ..-...+..||.|||+ |-+|+.++..|+..|+ .+|.|+|.+.
T Consensus         8 ~~~~~~~~y~r~i-~L~~~G~~~~q~kL~~~~VlVvGa-GGlGs~va~~La~aGV-G~i~lvD~D~   70 (292)
T 3h8v_A            8 HHHSSGLVPRGSM-ALKRMGIVSDYEKIRTFAVAIVGV-GGVGSVTAEMLTRCGI-GKLLLFDYDK   70 (292)
T ss_dssp             -------------------------CGGGGCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             ccccCCCCchHhh-cccccChHHHHHHHhCCeEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCCc
Confidence            5677787543322 2222221 1112223459999999 9999999999999887 4999999764

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.31  E-value=0.0071  Score=56.19  Aligned_cols=67  Identities=25%  Similarity=0.332  Sum_probs=49.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ....++|+|||. |.+|+.+|..+...|.  +|..+|.+.....+.++       .+..    .++++.+++||+|+++.
T Consensus       143 ~l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~-------g~~~----~~l~e~l~~aDiVil~v  208 (333)
T 2d0i_A          143 SLYGKKVGILGM-GAIGKAIARRLIPFGV--KLYYWSRHRKVNVEKEL-------KARY----MDIDELLEKSDIVILAL  208 (333)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCHHHHHHH-------TEEE----CCHHHHHHHCSEEEECC
T ss_pred             CCCcCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc-------Ccee----cCHHHHHhhCCEEEEcC
Confidence            344569999998 9999999999988887  99999987632111111       1221    25678899999999987


Q ss_pred             C
Q 021932          123 G  123 (305)
Q Consensus       123 g  123 (305)
                      .
T Consensus       209 p  209 (333)
T 2d0i_A          209 P  209 (333)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.31  E-value=0.0061  Score=56.98  Aligned_cols=73  Identities=16%  Similarity=0.200  Sum_probs=44.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccC-C-ceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-N-AVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~-~-~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++||+|+||+|.+|..++..|..++.. ||+.+......+...+-.|... . ..+..    .++. ++.++|+||++.|
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~-elv~v~s~~~~g~~~~~~~~~~~g~~~~~~----~~~~-~~~~vDvV~~a~g   77 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYL-EVKQVTSRRFAGEPVHFVHPNLRGRTNLKF----VPPE-KLEPADILVLALP   77 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTE-EEEEEBCSTTTTSBGGGTCGGGTTTCCCBC----BCGG-GCCCCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCc-EEEEEECchhhCchhHHhCchhcCcccccc----cchh-HhcCCCEEEEcCC
Confidence            479999998899999999998877654 6666543332332222111110 0 12221    1232 3689999999876


Q ss_pred             C
Q 021932          124 V  124 (305)
Q Consensus       124 ~  124 (305)
                      .
T Consensus        78 ~   78 (345)
T 2ozp_A           78 H   78 (345)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=96.30  E-value=0.0095  Score=57.13  Aligned_cols=96  Identities=19%  Similarity=0.236  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ...++|+|||. |.+|+.+|..+...|.  +|..||..+..      ...    ....   ..++++.++.||+|+++..
T Consensus       154 l~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~yd~~~~~------~~~----~~~~---~~sl~ell~~aDvV~lhvP  217 (416)
T 3k5p_A          154 VRGKTLGIVGY-GNIGSQVGNLAESLGM--TVRYYDTSDKL------QYG----NVKP---AASLDELLKTSDVVSLHVP  217 (416)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCCC------CBT----TBEE---CSSHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCcchh------ccc----CcEe---cCCHHHHHhhCCEEEEeCC
Confidence            44569999998 9999999999998888  99999986411      000    0111   2367899999999999864


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      ..  + +++. ++  |.       +.+....|.+++|+++  .++|.
T Consensus       218 lt--~-~T~~-li--~~-------~~l~~mk~gailIN~aRG~vvd~  251 (416)
T 3k5p_A          218 SS--K-STSK-LI--TE-------AKLRKMKKGAFLINNARGSDVDL  251 (416)
T ss_dssp             C--------C-CB--CH-------HHHHHSCTTEEEEECSCTTSBCH
T ss_pred             CC--H-HHhh-hc--CH-------HHHhhCCCCcEEEECCCChhhhH
Confidence            21  1 1111 11  11       2344456889999986  55664

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=96.27  E-value=0.004  Score=58.61  Aligned_cols=72  Identities=17%  Similarity=0.287  Sum_probs=45.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhh-hhh----ccc-----CCceEEEEecCCCHHHHhCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DIS----HMD-----TNAVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~-DL~----~~~-----~~~~v~~~~~t~d~~~al~~a  115 (305)
                      ++||+|+||+|++|..+...|..++.. ||..+......|+.. +..    |..     ....+..    .+. +.+.++
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~-el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~----~~~-~~~~~v   80 (359)
T 4dpk_A            7 TLKAAILGATGLVGIEYVRMLSNHPYI-KPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP----TDP-KLMDDV   80 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSE-EEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE----CCG-GGCTTC
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCc-eEEEEECchhcCCChhHhcccccccccccccccceEEe----CCH-HHhcCC
Confidence            469999999999999999988777654 888775444334322 110    100     0112221    132 457899


Q ss_pred             CEEEEcCC
Q 021932          116 DIVIIPAG  123 (305)
Q Consensus       116 DiVIi~ag  123 (305)
                      |+||++.+
T Consensus        81 Dvvf~a~p   88 (359)
T 4dpk_A           81 DIIFSPLP   88 (359)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999865

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=96.27  E-value=0.004  Score=58.61  Aligned_cols=72  Identities=17%  Similarity=0.287  Sum_probs=45.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhh-hhh----ccc-----CCceEEEEecCCCHHHHhCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DIS----HMD-----TNAVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~-DL~----~~~-----~~~~v~~~~~t~d~~~al~~a  115 (305)
                      ++||+|+||+|++|..+...|..++.. ||..+......|+.. +..    |..     ....+..    .+. +.+.++
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~-el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~----~~~-~~~~~v   80 (359)
T 4dpl_A            7 TLKAAILGATGLVGIEYVRMLSNHPYI-KPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP----TDP-KLMDDV   80 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSE-EEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE----CCG-GGCTTC
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCc-eEEEEECchhcCCChhHhcccccccccccccccceEEe----CCH-HHhcCC
Confidence            469999999999999999988777654 888775444334322 110    100     0112221    132 457899


Q ss_pred             CEEEEcCC
Q 021932          116 DIVIIPAG  123 (305)
Q Consensus       116 DiVIi~ag  123 (305)
                      |+||++.+
T Consensus        81 Dvvf~a~p   88 (359)
T 4dpl_A           81 DIIFSPLP   88 (359)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999865

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.27  E-value=0.016  Score=56.59  Aligned_cols=67  Identities=13%  Similarity=0.228  Sum_probs=43.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC------CCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKIN------PLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~------~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiV  118 (305)
                      +||+|||. |.+|.++|..|...      |+  +|++.+...  ....+.+..-.......      .+..+++++||+|
T Consensus        55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~--~ViVg~r~~sks~e~A~e~G~~v~d~ta------~s~aEAa~~ADVV  125 (525)
T 3fr7_A           55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKIGLRKGSKSFDEARAAGFTEESGTL------GDIWETVSGSDLV  125 (525)
T ss_dssp             SEEEEECC-TTHHHHHHHHHHHHHHHTTCCC--EEEEEECTTCSCHHHHHHTTCCTTTTCE------EEHHHHHHHCSEE
T ss_pred             CEEEEEeE-hHHHHHHHHHHHhcccccCCCC--EEEEEeCCchhhHHHHHHCCCEEecCCC------CCHHHHHhcCCEE
Confidence            59999998 99999999999988      77  766555433  22222211110000000      2457899999999


Q ss_pred             EEcC
Q 021932          119 IIPA  122 (305)
Q Consensus       119 Ii~a  122 (305)
                      |++.
T Consensus       126 ILaV  129 (525)
T 3fr7_A          126 LLLI  129 (525)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9985

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.25  E-value=0.0057  Score=58.46  Aligned_cols=107  Identities=21%  Similarity=0.269  Sum_probs=65.1

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhhhhcccCCce---------EEEEec-------
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAV---------VRGFLG-------  104 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~DL~~~~~~~~---------v~~~~~-------  104 (305)
                      ...++.||+|+|+ |.+|...+..+...|.  +|..+|++..+ ..+.++.-......         ...+..       
T Consensus       186 g~v~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~  262 (405)
T 4dio_A          186 GTVPAAKIFVMGA-GVAGLQAIATARRLGA--VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQ  262 (405)
T ss_dssp             EEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHH
T ss_pred             CCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhh
Confidence            4456789999999 9999999999998887  89999998732 22222211000000         000100       


Q ss_pred             ---CCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          105 ---QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       105 ---t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                         ..++++++++||+||.++..|.+...   .++      .++   .++.-.|.++|+.++
T Consensus       263 ~~~~~~l~e~l~~aDVVI~tvlipg~~ap---~Lv------t~e---mv~~Mk~GsVIVDvA  312 (405)
T 4dio_A          263 VKQAALVAEHIAKQDIVITTALIPGRPAP---RLV------TRE---MLDSMKPGSVVVDLA  312 (405)
T ss_dssp             HHHHHHHHHHHHTCSEEEECCCCSSSCCC---CCB------CHH---HHTTSCTTCEEEETT
T ss_pred             hhhHhHHHHHhcCCCEEEECCcCCCCCCC---EEe------cHH---HHhcCCCCCEEEEEe
Confidence               12467889999999999876643211   011      122   333344888888876

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=96.23  E-value=0.017  Score=54.67  Aligned_cols=74  Identities=24%  Similarity=0.355  Sum_probs=44.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCCchhhh-hhhcc---------cCCceEEEEecCCCHHHHhC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTA-DISHM---------DTNAVVRGFLGQQQLEDALT  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~-D~~~~~g~~~-DL~~~---------~~~~~v~~~~~t~d~~~al~  113 (305)
                      +++||+|+||+|++|.-+...|..++.. ||..+ ......|+.. |....         .....++.   . +.++.++
T Consensus        18 ~~~kVaIvGAtG~vG~ell~lL~~hp~~-el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~---~-~~~~~~~   92 (381)
T 3hsk_A           18 SVKKAGVLGATGSVGQRFILLLSKHPEF-EIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQE---C-KPEGNFL   92 (381)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSE-EEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEE---S-SSCTTGG
T ss_pred             CccEEEEECCCChHHHHHHHHHHcCCCc-eEEEeeccccccCCCHHHhcccccccccccccccceEEe---C-chhhhcc
Confidence            3469999999999999999988887754 77544 3333334322 22110         00112222   1 2112578


Q ss_pred             CCCEEEEcCC
Q 021932          114 GMDIVIIPAG  123 (305)
Q Consensus       114 ~aDiVIi~ag  123 (305)
                      ++|+||++.+
T Consensus        93 ~~Dvvf~alp  102 (381)
T 3hsk_A           93 ECDVVFSGLD  102 (381)
T ss_dssp             GCSEEEECCC
T ss_pred             cCCEEEECCC
Confidence            9999999864

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=96.21  E-value=0.0073  Score=56.46  Aligned_cols=95  Identities=19%  Similarity=0.314  Sum_probs=63.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ..++|+|||. |.+|+.+|..+...|.  +|..+|.....    +....     +..    .++++.+++||+|+++...
T Consensus       147 ~gktvgIiGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~----~~~~~-----~~~----~~l~ell~~aDvV~l~~Pl  210 (343)
T 2yq5_A          147 YNLTVGLIGV-GHIGSAVAEIFSAMGA--KVIAYDVAYNP----EFEPF-----LTY----TDFDTVLKEADIVSLHTPL  210 (343)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCG----GGTTT-----CEE----CCHHHHHHHCSEEEECCCC
T ss_pred             CCCeEEEEec-CHHHHHHHHHHhhCCC--EEEEECCChhh----hhhcc-----ccc----cCHHHHHhcCCEEEEcCCC
Confidence            3469999998 9999999999998888  99999986532    11111     121    1577899999999998643


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      .  + +++. ++  |.       +.+....|.+++|+++  .++|.
T Consensus       211 t--~-~t~~-li--~~-------~~l~~mk~gailIN~aRg~~vd~  243 (343)
T 2yq5_A          211 F--P-STEN-MI--GE-------KQLKEMKKSAYLINCARGELVDT  243 (343)
T ss_dssp             C--T-TTTT-CB--CH-------HHHHHSCTTCEEEECSCGGGBCH
T ss_pred             C--H-HHHH-Hh--hH-------HHHhhCCCCcEEEECCCChhhhH
Confidence            2  1 1111 11  21       2234446889999986  45553

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=96.20  E-value=0.0061  Score=54.32  Aligned_cols=109  Identities=17%  Similarity=0.181  Sum_probs=64.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCC----------HHHHhCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQ----------LEDALTGM  115 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d----------~~~al~~a  115 (305)
                      ++|.|+||++-+|..++..|+..|.  .|++.|+++..  ..++....  .++..+.. -+|          ..+.+...
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~--~~~~~~~~--~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i   76 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD--KVCFIDIDEKR--SADFAKER--PNLFYFHGDVADPLTLKKFVEYAMEKLQRI   76 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHTTC--TTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhc--CCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999998  99999997611  11111111  11111100 011          12445689


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932          116 DIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       116 DiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |++|..||......   .+   ....+..|+.    ..+...+.+.+.  ++-||+++
T Consensus        77 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~--~G~IInis  132 (247)
T 3ged_A           77 DVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN--KGRIINIA  132 (247)
T ss_dssp             CEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEC
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCcEEEEe
Confidence            99999998753321   12   2234555554    445555565543  36666664

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=96.18  E-value=0.0074  Score=56.39  Aligned_cols=89  Identities=12%  Similarity=0.117  Sum_probs=41.3

Q ss_pred             hhCCCcccc-ccccccccccccCCCCCCCCCEEEEEcCCCchHH-HHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccC
Q 021932           18 HLHPPTLQI-EGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQ-PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT   95 (305)
Q Consensus        18 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs-~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~   95 (305)
                      |-|.+||.| +.++ -|.+|       ++++||+|||+ |.+|. .++..+...+. .-+.++|.++..+.  ++.... 
T Consensus         5 ~~~~~~~~~~~~~~-~~~~M-------m~~irvgiiG~-G~~~~~~~~~~~~~~~~-~lvav~d~~~~~a~--~~a~~~-   71 (361)
T 3u3x_A            5 HHHSSGVDLGTENL-YFQSM-------MDELRFAAVGL-NHNHIYGQVNCLLRAGA-RLAGFHEKDDALAA--EFSAVY-   71 (361)
T ss_dssp             -----------------------------CCEEEEECC-CSTTHHHHHHHHHHTTC-EEEEEECSCHHHHH--HHHHHS-
T ss_pred             ccccccccCCCccc-hhhhh-------ccCcEEEEECc-CHHHHHHHHHHhhcCCc-EEEEEEcCCHHHHH--HHHHHc-
Confidence            668899988 6555 55555       23569999998 99985 45666655554 23457888652221  112111 


Q ss_pred             CceEEEEecCCCHHHHhCC--CCEEEEcCC
Q 021932           96 NAVVRGFLGQQQLEDALTG--MDIVIIPAG  123 (305)
Q Consensus        96 ~~~v~~~~~t~d~~~al~~--aDiVIi~ag  123 (305)
                       ...+.+   +|+++.+++  .|+|+++..
T Consensus        72 -~~~~~~---~~~~~ll~~~~vD~V~I~tp   97 (361)
T 3u3x_A           72 -ADARRI---ATAEEILEDENIGLIVSAAV   97 (361)
T ss_dssp             -SSCCEE---SCHHHHHTCTTCCEEEECCC
T ss_pred             -CCCccc---CCHHHHhcCCCCCEEEEeCC
Confidence             111222   477777765  899999753

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=96.18  E-value=0.017  Score=56.67  Aligned_cols=116  Identities=18%  Similarity=0.136  Sum_probs=70.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-----chhhhhhhcccCCceEEEEec-CCC---HHHHhCC-
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTNAVVRGFLG-QQQ---LEDALTG-  114 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-----~g~~~DL~~~~~~~~v~~~~~-t~d---~~~al~~-  114 (305)
                      +..+|.|+|++|.+|..++..|+..|. ..|++++++..     .....+|...  ..++..+.. -+|   +++.+++ 
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~~~v~~~~~~~  334 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLAAEGA-ERLVLTSRRGPEAPGAAELAEELRGH--GCEVVHAACDVAERDALAALVTAY  334 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-SEEEEEESSGGGSTTHHHHHHHHHTT--TCEEEEEECCSSCHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-cEEEEEecCCcccHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHhcC
Confidence            456899999999999999999998886 25899988652     1112233322  233443321 123   3334443 


Q ss_pred             -CCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEec
Q 021932          115 -MDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC-CPKAIVNLIS  163 (305)
Q Consensus       115 -aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~t  163 (305)
                       .|+||.+||......   .+   -...+..|+.....+.+.+.+. ..+.+|++.|
T Consensus       335 ~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS  391 (511)
T 2z5l_A          335 PPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSS  391 (511)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEE
T ss_pred             CCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence             899999999754221   11   2234566777777777766544 3344444443

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=96.17  E-value=0.0072  Score=56.16  Aligned_cols=96  Identities=23%  Similarity=0.254  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ...++|+|||. |.+|+.+|..+...|.  +|+.+|...... .   ..   .  .. .   .++++.+++||+|+++..
T Consensus       143 l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~-~---~~---~--~~-~---~~l~ell~~aDvV~~~~P  206 (333)
T 1dxy_A          143 LGQQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKG-D---HP---D--FD-Y---VSLEDLFKQSDVIDLHVP  206 (333)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSS-C---CT---T--CE-E---CCHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCcchh-h---Hh---c--cc-c---CCHHHHHhcCCEEEEcCC
Confidence            34569999999 9999999999998887  999999865211 1   11   1  11 1   156788999999999864


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      ..  + .++. ++  |    .+   .+....|.+++++++  .++|.
T Consensus       207 ~~--~-~t~~-li--~----~~---~l~~mk~ga~lIn~srg~~vd~  240 (333)
T 1dxy_A          207 GI--E-QNTH-II--N----EA---AFNLMKPGAIVINTARPNLIDT  240 (333)
T ss_dssp             CC--G-GGTT-SB--C----HH---HHHHSCTTEEEEECSCTTSBCH
T ss_pred             Cc--h-hHHH-Hh--C----HH---HHhhCCCCcEEEECCCCcccCH
Confidence            21  1 1111 11  1    12   233345789999986  45554

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.16  E-value=0.0084  Score=54.75  Aligned_cols=95  Identities=21%  Similarity=0.250  Sum_probs=63.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ...++|+|||. |.+|..+|..|...|.  +|..+|++.....   .        ...   ..++++.+++||+|+++..
T Consensus       120 l~g~tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~---~--------~~~---~~~l~ell~~aDiV~l~~P  182 (290)
T 3gvx_A          120 LYGKALGILGY-GGIGRRVAHLAKAFGM--RVIAYTRSSVDQN---V--------DVI---SESPADLFRQSDFVLIAIP  182 (290)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSCCCTT---C--------SEE---CSSHHHHHHHCSEEEECCC
T ss_pred             eecchheeecc-CchhHHHHHHHHhhCc--EEEEEeccccccc---c--------ccc---cCChHHHhhccCeEEEEee
Confidence            34569999998 9999999999998888  9999998652110   0        111   2367889999999999864


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      ...   +++. ++  |    .   +.+....|++++++++  .++|.
T Consensus       183 ~t~---~t~~-li--~----~---~~l~~mk~gailIN~aRG~~vd~  216 (290)
T 3gvx_A          183 LTD---KTRG-MV--N----S---RLLANARKNLTIVNVARADVVSK  216 (290)
T ss_dssp             CCT---TTTT-CB--S----H---HHHTTCCTTCEEEECSCGGGBCH
T ss_pred             ccc---cchh-hh--h----H---HHHhhhhcCceEEEeehhcccCC
Confidence            211   1111 11  1    1   2234445889999886  45554

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.15  E-value=0.01  Score=55.04  Aligned_cols=97  Identities=22%  Similarity=0.307  Sum_probs=61.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ...++|+|||. |.+|..+|..+...|.  +|..+|...... ..++   .     . .  ..++++.+++||+|+++..
T Consensus       144 l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~-~~~~---~-----~-~--~~~l~ell~~aDvV~l~~p  208 (333)
T 1j4a_A          144 VRDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPE-LEKK---G-----Y-Y--VDSLDDLYKQADVISLHVP  208 (333)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHH-HHHT---T-----C-B--CSCHHHHHHHCSEEEECSC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchh-HHhh---C-----e-e--cCCHHHHHhhCCEEEEcCC
Confidence            34469999998 9999999999998887  999999865322 1111   1     1 1  1256788999999999864


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCCc
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNS  168 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd~  168 (305)
                      ..  + +++. ++  |    ++   .+....|++++++++  .++|.
T Consensus       209 ~~--~-~t~~-li--~----~~---~l~~mk~ga~lIn~arg~~vd~  242 (333)
T 1j4a_A          209 DV--P-ANVH-MI--N----DE---SIAKMKQDVVIVNVSRGPLVDT  242 (333)
T ss_dssp             CC--G-GGTT-CB--S----HH---HHHHSCTTEEEEECSCGGGBCH
T ss_pred             Cc--H-HHHH-HH--h----HH---HHhhCCCCcEEEECCCCcccCH
Confidence            21  1 1111 11  1    11   223345788998886  44553

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.14  E-value=0.05  Score=48.60  Aligned_cols=115  Identities=16%  Similarity=0.170  Sum_probs=70.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC----------HHHHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ----------LEDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d----------~~~al  112 (305)
                      .+.+.|+||++-+|..+|..|++.|.  .|++.|+++  +...+.++....  .++..+.. -+|          ..+.+
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            34678889999999999999999998  999999976  222233343321  12221110 011          12234


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..-|++|..||......   .+   ....+..|+.    ..+..++.+.+....+.||+++.
T Consensus        85 G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS  146 (255)
T 4g81_D           85 IHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGS  146 (255)
T ss_dssp             CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEee
Confidence            57899999999753322   11   2234455543    55677777766666677777763

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.13  E-value=0.021  Score=50.15  Aligned_cols=85  Identities=15%  Similarity=0.121  Sum_probs=51.3

Q ss_pred             ccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec
Q 021932           25 QIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG  104 (305)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~  104 (305)
                      .|++.. +|+-..     +.+.++|.|||+ |.||...+..|+..|.  +|.++|.+.. ....+|...   ..+.....
T Consensus        16 ~~~~~~-~~Pifl-----~L~gk~VLVVGg-G~va~~ka~~Ll~~GA--~VtVvap~~~-~~l~~l~~~---~~i~~i~~   82 (223)
T 3dfz_A           16 HIEGRH-MYTVML-----DLKGRSVLVVGG-GTIATRRIKGFLQEGA--AITVVAPTVS-AEINEWEAK---GQLRVKRK   82 (223)
T ss_dssp             -------CCEEEE-----CCTTCCEEEECC-SHHHHHHHHHHGGGCC--CEEEECSSCC-HHHHHHHHT---TSCEEECS
T ss_pred             cccccC-ccccEE-----EcCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCCC-HHHHHHHHc---CCcEEEEC
Confidence            556666 455442     233458999999 9999999999998887  8999987532 222333332   12332222


Q ss_pred             CCCHHHHhCCCCEEEEcCC
Q 021932          105 QQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus       105 t~d~~~al~~aDiVIi~ag  123 (305)
                      ..+ ++.+.++|+||.+.+
T Consensus        83 ~~~-~~dL~~adLVIaAT~  100 (223)
T 3dfz_A           83 KVG-EEDLLNVFFIVVATN  100 (223)
T ss_dssp             CCC-GGGSSSCSEEEECCC
T ss_pred             CCC-HhHhCCCCEEEECCC
Confidence            222 367899999998754

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=96.13  E-value=0.02  Score=53.38  Aligned_cols=71  Identities=21%  Similarity=0.328  Sum_probs=42.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++||+|+||+|.+|..+...|.++++ ..+|+++......|....+..    ..+....  .+. ++++++|+||++.|
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g----~~i~~~~--~~~-~~~~~~DvV~~a~g   77 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAE----SSLRVGD--VDS-FDFSSVGLAFFAAA   77 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETT----EEEECEE--GGG-CCGGGCSEEEECSC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCC----cceEEec--CCH-HHhcCCCEEEEcCC
Confidence            46999999999999999998885432 236666643222222111111    1222211  122 34788999999875

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.12  E-value=0.0095  Score=56.73  Aligned_cols=99  Identities=18%  Similarity=0.205  Sum_probs=62.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      ....++|+|||. |.+|+.+|..+...|.  +|+.+|.... .....++.       +..   ..++++.++.||+|+++
T Consensus       188 ~l~gktvGIIGl-G~IG~~vA~~l~a~G~--~V~~~d~~~~~~~~~~~~G-------~~~---~~~l~ell~~aDvV~l~  254 (393)
T 2nac_A          188 DLEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLN  254 (393)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEEC
T ss_pred             cCCCCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEEcCCccchhhHhhcC-------cee---cCCHHHHHhcCCEEEEe
Confidence            344569999999 9999999999988787  9999998652 11111111       111   12567889999999998


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CCCC
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVN  167 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t--NPvd  167 (305)
                      ....  + +++. ++  |    .   +.+....|++++|+++  .++|
T Consensus       255 ~Plt--~-~t~~-li--~----~---~~l~~mk~gailIN~aRG~~vd  289 (393)
T 2nac_A          255 CPLH--P-ETEH-MI--N----D---ETLKLFKRGAYIVNTARGKLCD  289 (393)
T ss_dssp             SCCC--T-TTTT-CB--S----H---HHHTTSCTTEEEEECSCGGGBC
T ss_pred             cCCc--h-HHHH-Hh--h----H---HHHhhCCCCCEEEECCCchHhh
Confidence            6421  1 1111 11  1    1   2233345789999886  3444

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.04  E-value=0.0049  Score=58.50  Aligned_cols=118  Identities=19%  Similarity=0.190  Sum_probs=73.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhh--------hhhhcccCCceEEEEecCCCHHHHh
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVT--------ADISHMDTNAVVRGFLGQQQLEDAL  112 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~--------~DL~~~~~~~~v~~~~~t~d~~~al  112 (305)
                      +.+..||+|+|| |.+|..++..|...|. .+|.++|++.  ..+..        ..+.+. ...    .....++++++
T Consensus       189 ~l~~~kVVv~GA-GaAG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~-~~~----~~~~~~L~eav  261 (388)
T 1vl6_A          189 KIEEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARI-TNP----ERLSGDLETAL  261 (388)
T ss_dssp             CTTTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHT-SCT----TCCCSCHHHHH
T ss_pred             CCCCcEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHh-hhc----cCchhhHHHHH
Confidence            345669999999 9999999999888885 6899999973  11111        111111 111    11134689999


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee
Q 021932          113 TGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t  192 (305)
                      +++|++|=+.+ |   +--           .+++++.|+   ++.+|+=.+||.--+++-   ..++. |   +.++++.
T Consensus       262 ~~ADVlIG~Sa-p---~l~-----------t~emVk~Ma---~~pIIfalSNPt~E~~p~---~a~~~-g---~~i~atG  316 (388)
T 1vl6_A          262 EGADFFIGVSR-G---NIL-----------KPEWIKKMS---RKPVIFALANPVPEIDPE---LAREA-G---AFIVATG  316 (388)
T ss_dssp             TTCSEEEECSC-S---SCS-----------CHHHHTTSC---SSCEEEECCSSSCSSCHH---HHHHT-T---CSEEEES
T ss_pred             ccCCEEEEeCC-C---Ccc-----------CHHHHHhcC---CCCEEEEcCCCCCCCCHH---HHHHh-c---CeEEEeC
Confidence            99999887754 3   221           223333332   566888889998666542   22332 2   4788775

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=96.04  E-value=0.0095  Score=54.77  Aligned_cols=71  Identities=8%  Similarity=0.070  Sum_probs=46.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC--CCCEEEE
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVII  120 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~-L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi  120 (305)
                      .+++||+|||+ |.+|...+..|...+-. +|+ ++|.++....  ++......+  +.   .+|+++.++  ++|+|++
T Consensus         3 m~~~~igiiG~-G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~--~~~~~~~~~--~~---~~~~~~ll~~~~~D~V~i   73 (330)
T 3e9m_A            3 LDKIRYGIMST-AQIVPRFVAGLRESAQA-EVRGIASRRLENAQ--KMAKELAIP--VA---YGSYEELCKDETIDIIYI   73 (330)
T ss_dssp             CCCEEEEECSC-CTTHHHHHHHHHHSSSE-EEEEEBCSSSHHHH--HHHHHTTCC--CC---BSSHHHHHHCTTCSEEEE
T ss_pred             CCeEEEEEECc-hHHHHHHHHHHHhCCCc-EEEEEEeCCHHHHH--HHHHHcCCC--ce---eCCHHHHhcCCCCCEEEE
Confidence            45679999998 99999999988876533 555 7888762222  111111001  11   246777776  8999999


Q ss_pred             cCC
Q 021932          121 PAG  123 (305)
Q Consensus       121 ~ag  123 (305)
                      +..
T Consensus        74 ~tp   76 (330)
T 3e9m_A           74 PTY   76 (330)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            753

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.04  E-value=0.0047  Score=59.99  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.|||.|+|+ |.||+++|..|...++  +++++|.++
T Consensus         2 ~~M~iiI~G~-G~vG~~la~~L~~~~~--~v~vId~d~   36 (461)
T 4g65_A            2 NAMKIIILGA-GQVGGTLAENLVGENN--DITIVDKDG   36 (461)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHTCSTTE--EEEEEESCH
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCH
Confidence            5689999999 9999999999988888  999999986

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.03  E-value=0.015  Score=51.62  Aligned_cols=108  Identities=18%  Similarity=0.177  Sum_probs=64.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe-cCC------CHHHHhCCCCEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL-GQQ------QLEDALTGMDIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~t~------d~~~al~~aDiVI  119 (305)
                      +.+.|+||++-+|..++..|++.|.  .|++.|+++......  .    ..++..+. .-+      ..-+.+..-|++|
T Consensus        12 K~alVTGas~GIG~aia~~la~~Ga--~Vv~~~~~~~~~~~~--~----~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLV   83 (242)
T 4b79_A           12 QQVLVTGGSSGIGAAIAMQFAELGA--EVVALGLDADGVHAP--R----HPRIRREELDITDSQRLQRLFEALPRLDVLV   83 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTSTTSC--C----CTTEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHhhh--h----cCCeEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence            4788999999999999999999998  999999976111000  0    01111110 001      1234567899999


Q ss_pred             EcCCCCCCCCC-c---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          120 IPAGVPRKPGM-T---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       120 i~ag~~~~~g~-~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..||......+ +   ....+..|+.    ..+...+.+++.  .+-||+++.
T Consensus        84 NNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS  134 (242)
T 4b79_A           84 NNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR--GGSILNIAS  134 (242)
T ss_dssp             ECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--CEEEEEECC
T ss_pred             ECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCeEEEEee
Confidence            99997532211 1   1223444543    445555555544  366777753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	305
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	2e-43
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	3e-35
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	4e-32
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	2e-29
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	3e-29
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	5e-29
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	5e-29
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	6e-29
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	7e-29
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	7e-29
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	2e-28
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	4e-28
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	5e-28
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	8e-28
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	4e-27
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	2e-25
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	4e-25
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	1e-24
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	1e-24
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	2e-24
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	1e-22
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	1e-22
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	4e-18
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	5e-18
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	5e-17
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	5e-16
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	8e-16
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	1e-14
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	6e-14
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	2e-13
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	3e-13
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	3e-13
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	7e-13
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	2e-12
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	3e-12
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	9e-12
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	1e-11
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	1e-11
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	1e-11
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	2e-11
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	3e-11
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	9e-11
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	1e-10
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	2e-10
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	4e-10
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	1e-07

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  143 bits (362), Expect = 2e-43
 Identities = 93/143 (65%), Positives = 116/143 (81%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
           L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 168 STVPIAAEVFKKVGTYDPKRLLG 190
           ST+PI AEVFKK G Y+P ++ G
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFG 144

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  122 bits (308), Expect = 3e-35
 Identities = 83/145 (57%), Positives = 101/145 (69%), Gaps = 3/145 (2%)

Query: 48  KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ 105
           KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                   G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NP
Sbjct: 62  DATPAL-EGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           VN+TV IAAEV KK G YD  +L G
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  115 bits (289), Expect = 4e-32
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 9/137 (6%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNTPGVTADISHMDTNA---VV 99
            +AV GAAG I   L   +    +        L L     +      ++    ++   ++
Sbjct: 26  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AI 158
           R         +    +D  ++    PR PGM R  L +IN  I     + +     K   
Sbjct: 86  REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 145

Query: 159 VNLISNPVNSTVPIAAE 175
           V ++ NP N+   I  +
Sbjct: 146 VLVVGNPCNTNALICLK 162

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  107 bits (269), Expect = 2e-29
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 8/145 (5%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+AV+GA G +G  LA       +   + L D+          D+ H  +        G 
Sbjct: 3   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
              E      D+V+I AG  +KPG +R +L      I+K +   + K  P AI  LI+NP
Sbjct: 62  DDPEIC-RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           V+    IA  V +K+      ++ G
Sbjct: 121 VD----IATHVAQKLTGLPENQIFG 141

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  107 bits (267), Expect = 3e-29
 Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 12/149 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVS--------VLHLYDVVNTPGVTADISHMDTNAVV 99
           +VAV GAAG IG  L   +    ++         +L +   +                ++
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AI 158
            G       + A    D  ++    PRK GM R DL  +N  I       +A+   K   
Sbjct: 66  AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125

Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKR 187
           V ++ NP N+   IA   +K     +P+ 
Sbjct: 126 VLVVGNPANTNALIA---YKNAPGLNPRN 151

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  106 bits (265), Expect = 5e-29
 Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
           K+ V+GA G +G   A  +    L   L L DVV     G   D+       +    +  
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                     DIVII AG+PRKPGMTR+DL   NAGIVK + + I K     I+ ++SNP
Sbjct: 61  SNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV 191
           ++    +A            +R++G+
Sbjct: 121 LDIMTHVA----WVRSGLPKERVIGM 142

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  107 bits (267), Expect = 5e-29
 Identities = 64/110 (58%), Positives = 79/110 (71%)

Query: 191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTD 250
           VT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI+PL+SQ  P       ++  LT 
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG 60

Query: 251 RIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV 300
           RIQ  GTEVV+AK GAGSATLSMAYA A+F  + +  + G  GV+EC++V
Sbjct: 61  RIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFV 110

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  105 bits (264), Expect = 6e-29
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
           K+  +GA G +G   A    +N  V  + L D+      G   D++H          +  
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
                 L G +I+++ AG+ RKPGMTR DL + NAGI+K + + I +  P++ + +++NP
Sbjct: 61  GADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGV 191
           ++    I      K        + G+
Sbjct: 121 MDVMTYIM----WKESGKPRNEVFGM 142

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  105 bits (264), Expect = 7e-29
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           K+ ++G  G +G   A  + +      + L DV         +  +      R       
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
               L G D+VI+ AGVP+KPG TR  L   NA ++K +   ++K  P +IV +++NPV+
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 168 STVPIAAEVFKKVGTYDPKRLLG 190
               +    F K    DP+++ G
Sbjct: 121 ----VLTYFFLKESGMDPRKVFG 139

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  105 bits (264), Expect = 7e-29
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 5/143 (3%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KVA++GA G +G   A  M +    + L L DV     +   +        +        
Sbjct: 3   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 61

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
               +   D++++ AG  RKPG TR DL   N  I K + + I K     ++ ++SNPV+
Sbjct: 62  DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD 121

Query: 168 STVPIAAEVFKKVGTYDPKRLLG 190
               +     +K       +++G
Sbjct: 122 IITYMI----QKWSGLPVGKVIG 140

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  105 bits (262), Expect = 2e-28
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 12/153 (7%)

Query: 48  KVAVLGAAGGIGQPLAML-----MKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV--- 99
           +V V GAAG I   L        +       +L L D+    GV   +     +  +   
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 100 RGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
           +  +   + E A   +D+ I+   +PR+ GM R DL   N  I K     + K   K++ 
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 160 NL-ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191
            + + NP N+    A++    +     +    +
Sbjct: 125 VIVVGNPANTNCLTASKSAPSI---PKENFSCL 154

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  103 bits (259), Expect = 4e-28
 Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 6/145 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTNAVVRGFLGQ 105
           KV+V+GAAG +G      + +  +   +   D+ +    T           A       +
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR 61

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
           Q   +   G D+V+I AG+PR+PG TR DL   NA I++ +   + +     I    SNP
Sbjct: 62  QGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNP 121

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           V+    +      + G    ++++G
Sbjct: 122 VD----LLNRHLYEAGDRSREQVIG 142

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (260), Expect = 5e-28
 Identities = 70/114 (61%), Positives = 84/114 (73%), Gaps = 1/114 (0%)

Query: 191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTD 250
           VT LD++R+NTFVAE+ G  P EV+VPV+GGH+GVTILPLLSQV      T  E+  LT 
Sbjct: 1   VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVS-FTEQEVADLTK 59

Query: 251 RIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTV 304
           RIQN GTEVVEAK G GSATLSM  AAA+F  + +R L+G+ GV+ECAYV    
Sbjct: 60  RIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDG 113

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  102 bits (256), Expect = 8e-28
 Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQ 106
           K++++GA G +G   A  +    L  ++ L  V   P G   D+            +   
Sbjct: 3   KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT 61

Query: 107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
                    D++++ +G PRKPGM+R+DL  +NA I +      A   P A++ +++NP+
Sbjct: 62  NNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPL 121

Query: 167 NSTVPIAAEVFKKVGTYDPKRLLG 190
           ++   +AAEV      +  +R++G
Sbjct: 122 DAMTYLAAEVSG----FPKERVIG 141

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  101 bits (252), Expect = 4e-27
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 44  SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGF 102
           +P  K+ ++G+ G IG  +A L+    L  V+    V N P G   D SH +  A     
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKA 157
           +      D L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CP A
Sbjct: 60  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 119

Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 191
            + +++NPV+  V +      +       +++G+
Sbjct: 120 FIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL 149

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 97.0 bits (241), Expect = 2e-25
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 5/143 (3%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
           KV ++G  G +G   A  M    +     + DVV        +   D  A          
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65

Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
                   D+V+I AG P+KPG +R DL N N  I+ ++ + +       I  + +NPV+
Sbjct: 66  EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD 125

Query: 168 STVPIAAEVFKKVGTYDPKRLLG 190
               I      K   +  +R++G
Sbjct: 126 ----ILTYATWKFSGFPKERVIG 144

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.2 bits (239), Expect = 4e-25
 Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 8/145 (5%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
           K+ V+G  G +G   A+ + +  L   L L D       G   D+ H          +  
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFG 79

Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
           +          +VII AG     G TR DL   N  I+K +  G+ +  P   + +++NP
Sbjct: 80  KDYNV-SANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP 138

Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLG 190
           V+    +      K+  +   R++G
Sbjct: 139 VDILTYVVW----KISGFPVGRVIG 159

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 95.5 bits (237), Expect = 1e-24
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 8/148 (5%)

Query: 45  PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF 102
           P  K+ V+G  G +G   A+ +    L   L L DV+     G   D+ H          
Sbjct: 19  PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKI 77

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
           +  +          IV++ AGV ++ G +R +L   N  + K +   I K  P  I+ ++
Sbjct: 78  VADKDYSVT-ANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVV 136

Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           SNPV+    +      K+      R++G
Sbjct: 137 SNPVDILTYVT----WKLSGLPKHRVIG 160

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 94.8 bits (235), Expect = 1e-24
 Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 8/147 (5%)

Query: 46  GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTNAVVRGFL 103
           G +V V+GA G +G      +    +   + L D   +  +    D +H    A     +
Sbjct: 6   GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDI 64

Query: 104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163
                +D     D+V+I AG  +KPG TR DL + N  I +++ E +     + +  + +
Sbjct: 65  WHGDYDD-CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123

Query: 164 NPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           NPV+    I      K      +R++G
Sbjct: 124 NPVD----ILTYATWKFSGLPHERVIG 146

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 94.4 bits (234), Expect = 2e-24
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISHMDTNAVVRGFLGQQ 106
           KVA++G+ G IG  +  L  +  L  V+    V   P   A D+SH+ +       +  +
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE 67

Query: 107 -QLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
              E ALTG D VI+ AG+ + PG      +R+DL   N+ I++ + + I K CPK  + 
Sbjct: 68  YSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFII 127

Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           +++NP++  V +  E            + G
Sbjct: 128 VVTNPLDCMVKVMCEASG----VPTNMICG 153

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 89.5 bits (221), Expect = 1e-22
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 11/149 (7%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPGVTADISHMDTNAVVRGFL--- 103
           KV ++GA+G +G   A+L+   P +  L L     +   +      +             
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 104 --GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                +    +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C   I  +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           I+NPV+     A         ++  ++ G
Sbjct: 121 ITNPVDVMTYKAL----VDSKFERNQVFG 145

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 89.4 bits (221), Expect = 1e-22
 Identities = 25/149 (16%), Positives = 53/149 (35%), Gaps = 12/149 (8%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQ 105
           K+ ++G  G +G  +A  +    +       D           D      N    G +  
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 106 QQLEDALTGMDIVIIPAGVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
                 L   D+VI   G  +     P   R       + +V+++   + +     ++ +
Sbjct: 62  NDWAA-LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV 120

Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
           ISNPV+    +   +F+ V  +   +++G
Sbjct: 121 ISNPVD----VITALFQHVTGFPAHKVIG 145

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 77.8 bits (191), Expect = 4e-18
 Identities = 21/167 (12%), Positives = 47/167 (28%), Gaps = 32/167 (19%)

Query: 48  KVAVLGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGF 102
           ++AV+G  G    P  +   +    +  +  +  YD+      +  D          +  
Sbjct: 2   RIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL 60

Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA----------- 151
           +     E A+     VI         G   D+   +  G++     G+            
Sbjct: 61  ISDT-FEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPI 119

Query: 152 --------KCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
                   +    A +   +NP         E  +     + ++ +G
Sbjct: 120 VEEYVDTVRKTSNATIVNFTNPSG----HITEFVRNY--LEYEKFIG 160

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 77.4 bits (190), Expect = 5e-18
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 5/117 (4%)

Query: 193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSL----TPTEIDYL 248
           +LD  R  TF+A   G+  ++V   ++GGH    +            +     P  +  +
Sbjct: 3   VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQI 62

Query: 249 TDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVS 305
            +R + GG E+V      GSA  + A A A+  +A L+  +    V         ++
Sbjct: 63  VERTRKGGGEIVNLLKT-GSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGLN 118

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 74.7 bits (183), Expect = 5e-17
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ----VKPSCSLTPTEIDYL 248
           +LD  R  +F+A  LG+  ++++  V+GGH    +  +       +  S  L    ID L
Sbjct: 3   VLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKL 62

Query: 249 TDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV 300
            +R +NGG E+VE     GSA  + A +  +  ++ +   +           
Sbjct: 63  VERTRNGGAEIVEHL-KQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGLEG 113

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 72.0 bits (176), Expect = 5e-16
 Identities = 27/172 (15%), Positives = 47/172 (27%), Gaps = 36/172 (20%)

Query: 48  KVAVLGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTP--GVTADISH---MDTNAV 98
           K+A +G  G    P  +   I       V  L L D+                 ++   V
Sbjct: 3   KIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV 61

Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGI-------- 150
                       AL G D V     V       +D+   +  G++     G         
Sbjct: 62  PIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLR 121

Query: 151 ------------AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 190
                        + CP A +   +NP      +  E   +      ++++G
Sbjct: 122 TIPVILDIIRDMEELCPDAWLINFTNPAG----MVTEAVLRY--TKQEKVVG 167

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 71.6 bits (175), Expect = 8e-16
 Identities = 29/161 (18%), Positives = 45/161 (27%), Gaps = 30/161 (18%)

Query: 47  FKVAVLGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTNAV 98
           F + + G  G    P   L +L  +    +  L LYD      +      D+      A 
Sbjct: 4   FSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFI-REKAP 61

Query: 99  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA------- 151
              F      E+A T +D V+    V +      D+   +  G+V     G         
Sbjct: 62  DIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMR 121

Query: 152 -------------KCCPKAIVNLISNPVNSTVPIAAEVFKK 179
                        K  P A +   SNP          +   
Sbjct: 122 SIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN 162

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 68.6 bits (167), Expect = 1e-14
 Identities = 27/167 (16%), Positives = 43/167 (25%), Gaps = 34/167 (20%)

Query: 45  PGFKVAVLGAAGGIGQPLAM---LMKINPL-VSVLHLYDVV--NTPGVTADISHM-DTNA 97
           P  K+ ++GA G     L +   L K   L  S + L D+       +        +   
Sbjct: 1   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 59

Query: 98  VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI------------------- 138
               F     L+D +   D VI  A V     + +                         
Sbjct: 60  ADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDY 119

Query: 139 -------NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK 178
                         +   I K  PKA     +NP+     +      
Sbjct: 120 YTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVP 166

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 66.7 bits (162), Expect = 6e-14
 Identities = 21/118 (17%), Positives = 33/118 (27%), Gaps = 9/118 (7%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T LD  RA   +A  LG+   +V   ++ G+   T  P ++  K         +      
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60

Query: 252 IQNGGTEVVEAKTGAG---------SATLSMAYAAAKFADACLRGLRGDAGVIECAYV 300
                 E +      G         S+ +S A A          G      V      
Sbjct: 61  DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIIS 118

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 64.9 bits (157), Expect = 2e-13
 Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 11/116 (9%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP--------T 243
             LD  R    + E LG+        V+G H              S  L P         
Sbjct: 3   CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQ 62

Query: 244 EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY 299
           +   L   + +   EV++ K     A   +  + A  A+  ++ L     V     
Sbjct: 63  DWKKLHKDVVDSAYEVIKLKGYTSWA---IGLSVADLAETIMKNLCRVHPVSTMVK 115

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 64.5 bits (156), Expect = 3e-13
 Identities = 18/114 (15%), Positives = 30/114 (26%), Gaps = 4/114 (3%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPS---CSLTPTEIDYL 248
           T LD  R    + +   +DPR VD  ++G H G +     S              E    
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVS 59

Query: 249 TDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
            D +      V        +   +  Y          + +  D   +       
Sbjct: 60  DDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYM 113

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 64.5 bits (156), Expect = 3e-13
 Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 15/126 (11%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLT---------- 241
           T LD  R    +A+  G++ + V   + G H    +    S       ++          
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60

Query: 242 --PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY 299
               + + +   ++N   +++  K     A   +  +     +A L        V     
Sbjct: 61  LDADKREEIHQEVKNAAYKIINGKGATNYA---IGMSGVDIIEAVLHDTNRILPVSSMLK 117

Query: 300 VASTVS 305
               +S
Sbjct: 118 DFHGIS 123

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 63.3 bits (153), Expect = 7e-13
 Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 11/119 (9%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLT---------- 241
           T+LD +R    ++E LG+D + V   ++G H    +           ++           
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60

Query: 242 -PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY 299
              +   + + ++  G  +++ K               +        +R    VI   Y
Sbjct: 61  TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMY 119

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 1/111 (0%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T LD +R    +A+  G+   EV   ++G H G +++PLLS              +    
Sbjct: 3   THLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELP 61

Query: 252 IQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
           I     +V               +  A      +R +  +   +       
Sbjct: 62  IDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYV 112

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 61.8 bits (149), Expect = 3e-12
 Identities = 20/113 (17%), Positives = 30/113 (26%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T+LD  R  T +A+  G  PR V V V+G H    +      +     L           
Sbjct: 2   TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCD 61

Query: 252 IQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTV 304
            +       + K  A              A A    +       +     S  
Sbjct: 62  SKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVY 114

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 60.3 bits (145), Expect = 9e-12
 Identities = 24/106 (22%), Positives = 34/106 (32%), Gaps = 1/106 (0%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
           T+LD  R    V E   LDPR V    +G H G +     S V+       T  D     
Sbjct: 2   TLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDID 60

Query: 252 IQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIEC 297
           +     E  +      +     +Y  A  A    + +  DA     
Sbjct: 61  LAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADAHAELV 106

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 59.8 bits (144), Expect = 1e-11
 Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 1/109 (0%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
             LD  R    ++E      + V+  ++G H G   +P+ S+V    +      D     
Sbjct: 3   GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQL 61

Query: 252 IQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV 300
           + +     ++     G+     A   A   +A L               
Sbjct: 62  LGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEG 110

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.3 bits (145), Expect = 1e-11
 Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 18/131 (13%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDR 251
             LD  R    + E LG++P      V+G H   ++           +L        TD+
Sbjct: 3   CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDK 62

Query: 252 IQNGGTEVVEAKTG--------AGSATLSMAYAAAKFADACLRG----------LRGDAG 293
            +     V +             G  + ++  +    A + L+           ++G  G
Sbjct: 63  NKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHG 122

Query: 294 VIECAYVASTV 304
           + E  +++   
Sbjct: 123 IKEEVFLSIPC 133

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 59.8 bits (144), Expect = 1e-11
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 7/106 (6%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP-------TE 244
           T LD  R    +AE++ +D R V   ++G H                ++          +
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIK 60

Query: 245 IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRG 290
            D L    ++      E     G+    +A A A+ + A L     
Sbjct: 61  EDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENA 106

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 2e-11
 Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 20/132 (15%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPT-------- 243
             LD  R    +AE LG+ P      ++G H G + + + S V  +              
Sbjct: 3   CNLDSARFRYLMAEKLGIHPSSCHGWILGEH-GDSSVAVWSGVNVAGVSLQELNPEMGTD 61

Query: 244 ----EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG-------LRGDA 292
                   +   +     EV++ K     A         +     L         ++G  
Sbjct: 62  NDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMY 121

Query: 293 GVIECAYVASTV 304
           G+    +++   
Sbjct: 122 GIENEVFLSLPC 133

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 58.7 bits (141), Expect = 3e-11
 Identities = 13/123 (10%), Positives = 36/123 (29%), Gaps = 10/123 (8%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLT---------- 241
           T+LD  R    + E   + P+ V   ++G H    +            +           
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEA 60

Query: 242 PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVA 301
             +++ +   +++   +++E K               +        +   +  ++  Y  
Sbjct: 61  QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGE 120

Query: 302 STV 304
             V
Sbjct: 121 RDV 123

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 57.5 bits (138), Expect = 9e-11
 Identities = 22/113 (19%), Positives = 32/113 (28%), Gaps = 4/113 (3%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSLTPTEIDY 247
           T LD  RA   +A+  G     +    V G+   T+ P L   +    P+  L   E   
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYE 61

Query: 248 LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV 300
                          +    S+  S A AA +       G      V      
Sbjct: 62  KVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPS 114

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 57.6 bits (138), Expect = 1e-10
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 10/116 (8%)

Query: 193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTE-------- 244
           MLD  R   +VA+ L + PR+V   V+G H    +  +         +            
Sbjct: 3   MLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEK 62

Query: 245 -IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY 299
            ++ + +  +  G E+V    G GSA  + A +A   A + L   +          
Sbjct: 63  QLEEIAEHTKVSGGEIV-RFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCN 117

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 9/121 (7%)

Query: 193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---------LSQVKPSCSLTPT 243
           +LD  R   ++++ L + PR+V+  +VG H    +L           L +   +  ++  
Sbjct: 2   VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDA 61

Query: 244 EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAST 303
           E++ + DR  N   E+V        A  +     A+     L+ +   + ++E  Y  S 
Sbjct: 62  ELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSD 121

Query: 304 V 304
           +
Sbjct: 122 I 122

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 56.2 bits (135), Expect = 4e-10
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 9/116 (7%)

Query: 192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV-------KPSCSLTPTE 244
           T LD  RA   +A   G+   +V    + G+   T +P            K     T   
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60

Query: 245 IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV 300
            +  T  +Q  G  +++      S+  S A + A    + +             Y 
Sbjct: 61  EEEFTITVQKRGGALIQKWG--RSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYT 114

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 194 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS 239
           LD  RA + +A   G     ++   V G+   T+       +   +
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGA 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	100.0
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	100.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	100.0
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	100.0
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	100.0
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	100.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	100.0
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	100.0
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	100.0
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	100.0
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	100.0
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	100.0
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	100.0
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	100.0
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.98
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.97
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.97
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.94
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.92
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.92
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.9
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.83
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.83
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.82
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.81
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.81
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.8
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.8
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.8
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.77
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.77
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.76
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.76
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.75
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.75
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.75
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.74
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.72
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.72
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.71
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.71
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.68
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.67
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.56
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.52
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.08
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.94
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.85
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.65
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.64
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.62
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.61
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.5
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	98.5
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.49
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	98.44
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.44
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	98.41
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.39
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	98.36
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.27
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	98.26
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.25
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	98.19
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	98.19
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.16
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.13
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.13
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.12
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.12
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	98.1
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	98.1
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	98.09
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	98.05
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.02
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.98
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	97.97
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	97.96
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	97.94
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.91
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.86
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.86
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.78
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.77
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	97.74
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	97.73
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.67
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.66
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.59
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	97.59
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.58
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	97.56
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	97.53
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.53
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	97.51
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	97.42
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.37
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.35
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.3
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	97.3
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.3
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.29
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.17
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.16
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.15
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.15
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.12
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.1
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.02
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.95
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.91
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.9
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.89
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.88
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.87
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.86
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.85
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.82
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.81
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.78
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.78
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.74
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.72
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.7
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.68
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.66
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.65
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.62
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.62
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.61
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.6
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.6
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.55
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.54
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.51
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.51
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.5
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	96.5
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.49
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.48
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.47
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.45
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	96.43
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.43
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.42
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.41
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.39
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.38
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.34
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.31
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.29
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.28
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.26
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.25
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.25
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.23
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.23
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.18
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.18
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.14
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.14
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.1
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.09
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.07
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.06
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.06
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.99
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	95.98
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.96
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.95
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.92
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.92
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	95.91
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.82
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.78
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	95.78
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.78
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	95.75
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.71
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.64
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.64
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.64
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.61
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	95.61
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.56
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.53
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	95.5
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.49
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.47
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.46
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	95.45
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.44
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.41
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.36
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.33
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.32
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.26
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.25
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.23
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.23
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.19
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.18
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	95.14
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.12
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.04
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.03
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	95.03
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	94.97
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.92
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.89
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.87
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.82
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	94.82
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.78
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	94.78
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.76
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.68
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.6
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.56
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	94.49
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	94.47
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.44
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	94.41
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	94.37
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.34
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.33
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.26
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.25
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	94.13
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.1
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.09
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.04
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.03
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	94.0
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	93.92
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	93.83
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.78
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	93.77
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.76
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	93.69
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.67
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	93.65
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	93.64
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.63
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	93.56
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	93.54
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.53
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	93.4
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	93.32
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.31
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	93.31
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.29
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.26
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	93.22
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	93.2
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	93.17
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.01
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	92.94
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	92.92
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	92.89
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	92.84
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	92.76
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	92.72
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	92.61
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	92.52
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	92.43
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	92.37
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	92.24
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	92.08
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.03
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	91.87
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	91.85
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	91.8
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	91.79
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	91.76
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	91.56
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	91.46
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	91.3
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	91.25
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	90.94
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	90.89
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.77
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.73
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.45
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.36
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.28
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	90.11
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	89.94
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.85
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	89.67
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	89.63
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	89.62
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	89.53
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	89.52
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	89.47
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	89.07
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	89.03
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	88.8
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	88.8
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	88.26
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	88.21
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	87.92
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	87.91
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	87.88
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	87.85
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	87.65
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	87.59
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.1
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	87.1
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	86.96
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	86.46
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	86.4
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	86.25
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	85.85
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	85.83
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	85.68
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	85.02
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	84.99
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	84.78
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	84.68
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	84.57
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	84.45
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	84.18
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	84.1
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	84.06
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	83.82
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	83.53
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	83.15
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.14
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	83.1
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	82.97
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	82.92
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	82.86
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	82.48
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	82.21
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	82.13
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	81.11
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	80.74
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	80.67
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	80.49
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	80.32

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.4e-37  Score=255.03  Aligned_cols=143  Identities=65%  Similarity=1.102  Sum_probs=133.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRK  127 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~~  127 (305)
                      ||+||||+|+||+++|+.|+.+++++||+|+|+++.+|+++|++|...+.....+...++++++++|||+||+++|.|++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~   81 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence            89999977999999999999999999999999988899999999987666555544456778999999999999999999


Q ss_pred             CCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 021932          128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (305)
Q Consensus       128 ~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG  190 (305)
                      +||+|.+++..|++++++++++|.+++|+++++++|||+|+||+++++++++.++||++||||
T Consensus        82 ~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            999999999999999999999999999999999999999999999999999999999999998

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.4e-36  Score=250.81  Aligned_cols=143  Identities=59%  Similarity=0.964  Sum_probs=131.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      |||+|||++|+||+++|+.|+. .++.+||+|+|+++ ++|+++||.|.........+.+++++ ++++|||+||+++|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~-~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCH-HHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCc-cccCCCCEEEECCCc
Confidence            6999999779999999998875 47889999999977 68999999998766666666666676 789999999999999


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG  190 (305)
                      |+++|++|.|++..|.+++++++++|.+++|+++++++|||+|+|++++++++++.++||++|+||
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999998

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=2.1e-36  Score=250.58  Aligned_cols=139  Identities=28%  Similarity=0.433  Sum_probs=124.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCc-eEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNA-VVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~-~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |.||+|||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+..+. ..... .++++ ++++|||+||+++
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~-~~~~~-~~~~daDvVVita   77 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSID-GSDDP-EICRDADMVVITA   77 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEE-EESCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceee-cCCCH-HHhhCCcEEEEec
Confidence            469999998 999999999999999999999999988  789999999985432 22222 23565 7899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      |.++++|++|+|++..|++++++++++|++++|+++++++|||+|+||+++    |+.+|||++||||+
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~----~~~sg~p~~rViG~  142 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA----QKLTGLPENQIFGS  142 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHTCCTTSEEEC
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHH----HHHHCCChhhccCC
Confidence            999999999999999999999999999999999999999999999998765    77889999999997

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.7e-35  Score=244.94  Aligned_cols=138  Identities=29%  Similarity=0.495  Sum_probs=124.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC--CceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |||+|||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+..  ....+.. .++|+ ++++|||+||+++
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~-~~~d~-~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIV-GGADY-SLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEE-EESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccc-cCCCH-HHhccccEEEEec
Confidence            79999998 999999999999999999999999988  7899999999752  1222222 24576 7999999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      |.|+++|++|.+++.+|++++++++++|.+++|+++++++|||+|+|||++    ++.+|||++||||+
T Consensus        78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~k~sg~p~~rViG~  142 (142)
T d1ojua1          78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGM  142 (142)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSCCCTTSEEEC
T ss_pred             cccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChHHHHHHH----HHHHCCChhcEecC
Confidence            999999999999999999999999999999999999999999999998764    78899999999996

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2.1e-35  Score=245.96  Aligned_cols=138  Identities=25%  Similarity=0.366  Sum_probs=124.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC--ceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      ..||+|||| |+||+++|+.|++.++++||+|+|+++  ++|+++||+|+..+  ..++..  +.|+ ++++|||+||++
T Consensus         6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~--~~d~-~~l~daDvvvit   81 (148)
T d1ldna1           6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW--HGDY-DDCRDADLVVIC   81 (148)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE--ECCG-GGTTTCSEEEEC
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEE--ECCH-HHhccceeEEEe
Confidence            459999998 999999999999999999999999987  78999999998642  234433  3465 889999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      +|.++++|++|.|++.+|++++++++++|++++|+++++++|||+|+||+++    ++.+||||+||||+
T Consensus        82 ag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~----~k~sg~p~~rViG~  147 (148)
T d1ldna1          82 AGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT----WKFSGLPHERVIGS  147 (148)
T ss_dssp             CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHTCCGGGEEEC
T ss_pred             cccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHH----HHHHCcChhheecC
Confidence            9999999999999999999999999999999999999999999999998765    67789999999997

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=100.00  E-value=7.4e-35  Score=245.31  Aligned_cols=139  Identities=25%  Similarity=0.392  Sum_probs=123.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .+||+|||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|...+..........|+ ++++|||+||+++|
T Consensus        20 ~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~-~~~~~adiVVitAg   97 (160)
T d1i0za1          20 NNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY-SVTANSKIVVVTAG   97 (160)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG-GGGTTCSEEEECCS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch-hhcccccEEEEecC
Confidence            359999998 999999999999999999999999987  78999999997632111111124565 78999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG  190 (305)
                      .++++|++|++++..|++++++++++|++++|+++++++|||+|+||+++    ++.+|||++||||
T Consensus        98 ~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~----~k~sglp~~rViG  160 (160)
T d1i0za1          98 VRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT----WKLSGLPKHRVIG  160 (160)
T ss_dssp             CCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             CccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHHH----HHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999999765    6778999999998

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=1.3e-34  Score=239.50  Aligned_cols=137  Identities=28%  Similarity=0.410  Sum_probs=116.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-CceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||.|+.. ......+  +.++ ++++|||+||+++|
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~--~~~~-~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY--AGDY-SDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----CG-GGGTTCSEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEe--eCcH-HHhCCCceEEEecc
Confidence            49999998 999999999999999999999999988  7899999999753 2344433  3455 78999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      .++++|++|.+++.+|++++++++++|.+++|+++++++|||+|+||+++    |+.+|||++||||+
T Consensus        78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv~t~~~----~k~sg~p~~rViG~  141 (142)
T d1y6ja1          78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI----QKWSGLPVGKVIGS  141 (142)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH----HHHHTCCTTTEEEC
T ss_pred             cccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHHHHHHH----HHHHCCCccceecC
Confidence            99999999999999999999999999999999999999999999998764    77889999999996

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.8e-34  Score=238.50  Aligned_cols=137  Identities=29%  Similarity=0.409  Sum_probs=121.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----CchhhhhhhcccC-CceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~----~~g~~~DL~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      .||+||||+|+||+++|+.|+.+++++||+|+|++.    ++|+++||.|... ....+..  +.++ ++++|||+||++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~--~~~~-~~~~~aDiVvit   77 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR--QGGY-EDTAGSDVVVIT   77 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEE--ECCG-GGGTTCSEEEEC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEe--eCCH-HHhhhcCEEEEe
Confidence            399999966999999999999999999999999854    5789999999643 2233332  2455 789999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG  190 (305)
                      +|.|+++||+|.|++..|++++++++++|.+++|+++++++|||+|+||+++    |+.+|||++||||
T Consensus        78 aG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~~----~k~sg~~~~rViG  142 (142)
T d1o6za1          78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHL----YEAGDRSREQVIG  142 (142)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHH----HHHSSSCGGGEEE
T ss_pred             cccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHHHHHHH----HHHHCcCcccccC
Confidence            9999999999999999999999999999999999999999999999998764    7889999999998

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.3e-34  Score=239.03  Aligned_cols=137  Identities=29%  Similarity=0.515  Sum_probs=123.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-CceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      |||+|||| |+||+++++.|+.+++++||+|+|+++  ++|+++|+.|... .......  ++|+ ++++|||+||+++|
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~--~~~~-~~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY--AGDY-ADLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE--ECCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccccccccccc--CCcH-HHhcCCCEEEEecc
Confidence            69999998 999999999999999999999999987  7899999999753 2333333  2455 78999999999999


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      .++++|++|.|++.+|++++++++++|+++||+++++++|||+|+||+++    ++.+||||+||||+
T Consensus        77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~~----~k~sg~p~~rViGt  140 (140)
T d1a5za1          77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF----LKESGMDPRKVFGS  140 (140)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCTTTEEEC
T ss_pred             cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH----HHHHCcCccceeCc
Confidence            99999999999999999999999999999999999999999999998765    67789999999995

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=100.00  E-value=4.7e-35  Score=243.26  Aligned_cols=137  Identities=18%  Similarity=0.278  Sum_probs=116.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCC--ceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTN--AVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +||+|||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+..+  ......  ++|+ ++++|||+||+++
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~--~~d~-~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV--INDW-AALADADVVISTL   77 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE--ESCG-GGGTTCSEEEECC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCcccee--ccCH-HHhccccEEEEec
Confidence            59999998 999999999999999999999999988  68999999998532  233332  3465 7899999999999


Q ss_pred             CCCC----CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          123 GVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       123 g~~~----~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      |.++    ++|++|+|++..|+++++++++.|++++|+++++++|||+|+||+++    ++.+|||++||||+
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~k~sg~p~~rViGt  146 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALF----QHVTGFPAHKVIGT  146 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHHHHHHH----HHHhCCCccceeCc
Confidence            9876    67899999999999999999999999999999999999999998765    77889999999995

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=6.7e-34  Score=235.96  Aligned_cols=138  Identities=31%  Similarity=0.500  Sum_probs=120.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----CchhhhhhhcccC--CceEEEE-ecCCCHHHHhCCCCEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT--NAVVRGF-LGQQQLEDALTGMDIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~----~~g~~~DL~~~~~--~~~v~~~-~~t~d~~~al~~aDiVI  119 (305)
                      |||+||||+|+||+++|+.|+.+++++||+|+|+++    ++|+++||.|+..  ...++.. .+++|+ ++++|||+||
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~-~~l~~aDvVV   79 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL-RIIDESDVVI   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG-GGGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH-HHhccceEEE
Confidence            699999977999999999999999999999999986    4688999999642  2333332 223465 8999999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG  190 (305)
                      +|||.|+++|++|.|++..|++++++++++|.+++|++++ ++|||+|+|||++    ++.+|||++||||
T Consensus        80 itAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~ii-vVtNPvD~mt~~~----~k~sg~p~~rViG  145 (145)
T d1hyea1          80 ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVDVMTYKA----LVDSKFERNQVFG  145 (145)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECSSSHHHHHHHH----HHHHCCCTTSEEE
T ss_pred             EecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEE-EEcCchHHHHHHH----HHHHCcCcccccC
Confidence            9999999999999999999999999999999999998865 5899999998765    7788999999998

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-34  Score=242.42  Aligned_cols=141  Identities=24%  Similarity=0.375  Sum_probs=124.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      .+..||+|||+ |+||+++|+.|+..++++||+|+|+++  ++|+++||+|+............+|+ +++++||+||++
T Consensus        17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvit   94 (159)
T d2ldxa1          17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIIT   94 (159)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEEC
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEe
Confidence            44569999998 999999999999999999999999987  78999999998642211111123465 789999999999


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG  190 (305)
                      +|.++++|++|.|++..|++++++++++|.+++|+++++++|||+|+|||++    ++.+|||++||||
T Consensus        95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv~t~~~----~k~sg~p~~rV~G  159 (159)
T d2ldxa1          95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYVV----WKISGFPVGRVIG  159 (159)
T ss_dssp             CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHHHHHHH----HHHHCSCTTTEEE
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHHHHHHH----HHHHCcCcccccC
Confidence            9999999999999999999999999999999999999999999999999765    7788999999998

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=100.00  E-value=2.5e-34  Score=238.93  Aligned_cols=138  Identities=26%  Similarity=0.421  Sum_probs=114.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-CceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      .+||+|||+ |+||+++|+.|+++++++||+|+|+++  ++|+++||+|+.. .......  ++|+ ++++|||+||+++
T Consensus         5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~--~~d~-~~~~~adivvita   80 (146)
T d1ez4a1           5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY--SGEY-SDCKDADLVVITA   80 (146)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE--ECCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEe--eccH-HHhccccEEEEec
Confidence            469999998 999999999999999999999999988  7899999999763 2223333  3476 7899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      |.++++|++|.+++..|++++++++++|.+++|+++++++|||+|+||+++    ++.+|||++||||+
T Consensus        81 g~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~----~k~sg~p~~rViG~  145 (146)
T d1ez4a1          81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYAT----WKFSGFPKERVIGS  145 (146)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHH----HHHHCcCccceecC
Confidence            999999999999999999999999999999999999999999999998764    77889999999997

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=100.00  E-value=3.1e-34  Score=237.18  Aligned_cols=138  Identities=35%  Similarity=0.528  Sum_probs=122.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC--CceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |||+|||| |+||+++++.|+..++++||+|+|+++  ++++++|++|...  ....+.. .++|+ ++++|||+||+++
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~-~~~~~-~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT-GSNDY-ADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEE-EESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEE-ecCCH-HHhcCCeEEEEEE
Confidence            69999998 999999999999999999999999988  6788899998752  2233322 23565 7899999999999


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      |.|+++|++|.+++.+|++++++++++|.++||+++++++|||+|++|+++    ++.+|||++||||+
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~~~~~----~~~sg~p~~rviG~  142 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA----WVRSGLPKERVIGM  142 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH----HHHHCSCGGGEEEE
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHHHHHH----HHHhCCChHhEeeC
Confidence            999999999999999999999999999999999999999999999998765    66789999999996

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=2.7e-33  Score=234.59  Aligned_cols=143  Identities=31%  Similarity=0.536  Sum_probs=123.9

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC--CceEEEEecCCCHHHHhCCCCE
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDI  117 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aDi  117 (305)
                      +-.+++||+|||+ |.||+++|+.|++.++. ||+|+|+++  ++|+++||.|...  ....... .+++++++++|||+
T Consensus         3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~-el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~adi   79 (154)
T d1pzga1           3 LVQRRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR-AEYSYEAALTGADC   79 (154)
T ss_dssp             CCSCCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEE-EECSHHHHHTTCSE
T ss_pred             cccCCCcEEEECC-CHHHHHHHHHHHhCCCc-eEEEEEeccccchhHHHHHhhhccccCCeeEEe-ccCchhhhhcCCCe
Confidence            3445679999998 99999999999998875 899999988  7899999999742  1111111 24577889999999


Q ss_pred             EEEcCCCCCCCCC-----chhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          118 VIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       118 VIi~ag~~~~~g~-----~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      ||+++|.++++|+     +|++++..|++++++++++|.++||+++++++|||+|+||+++    ++.+|||++||||+
T Consensus        80 Vvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~~----~~~sg~p~~rViG~  154 (154)
T d1pzga1          80 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM----CEASGVPTNMICGM  154 (154)
T ss_dssp             EEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             EEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH----HHHhCcChhcEecC
Confidence            9999999999985     8999999999999999999999999999999999999999875    67789999999996

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.3e-33  Score=233.96  Aligned_cols=138  Identities=30%  Similarity=0.554  Sum_probs=120.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC--CceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      +.||+|||+ |+||+++|++|+++++ +||+|||+++  ++|+++||+|...  ....... .+.++ ++++|||+||++
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~-~~~~~-~~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS-GSNTY-DDLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEE-EECCG-GGGTTCSEEEEC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEE-ecccc-cccCCCcEEEEe
Confidence            459999998 9999999999998886 5999999988  7899999999753  2222222 13354 889999999999


Q ss_pred             CCCCCCCCCc-----hhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          122 AGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       122 ag~~~~~g~~-----r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      +|.++++|++     |++++..|++++++++++|+++||+++++++|||+|+||+++    |+.+|||++||||+
T Consensus        79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~~~sg~p~~rViG~  149 (150)
T d1t2da1          79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL  149 (150)
T ss_dssp             CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHH----HHHHCCCchheecc
Confidence            9999999876     999999999999999999999999999999999999998764    77889999999997

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.98  E-value=1e-32  Score=228.10  Aligned_cols=134  Identities=28%  Similarity=0.548  Sum_probs=111.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC----CceEEEEecCCCHHHHhCCCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----NAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      +||+|||+ |+||+++|+.|+++++. |++|+|+++  ++|+++|+.|...    ...+..   ++|+ ++++|+|+||+
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~---~~d~-~~~~~advvvi   75 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNNY-ADTANSDVIVV   75 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSEEEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhccccccCCCCEEEe---cCcH-HHhcCCCEEEE
Confidence            59999998 99999999999998875 899999988  6899999999852    223332   4576 78999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG  190 (305)
                      ++|.|+++|++|.|++..|++++++++++|.+++|+++++++|||+|+|||++    |+.+|||++||||
T Consensus        76 tag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t~~~----~~~sglp~~rViG  141 (142)
T d1uxja1          76 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA----AEVSGFPKERVIG  141 (142)
T ss_dssp             CCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             eeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHHHHH----HHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999999999875    6778999999999

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=2.9e-31  Score=222.04  Aligned_cols=143  Identities=25%  Similarity=0.389  Sum_probs=118.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCCC----CchhhhhhhcccCCceEEEEecCCCHHHHhCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTG  114 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~-----~el~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~  114 (305)
                      ++|+||+||||+|+||+++++.|++++++     .+|+|+|+++    +++..+|+.|+.. +....+....+.+++++|
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~   79 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL-PLLKDVIATDKEEIAFKD   79 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC-TTEEEEEEESCHHHHTTT
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccc-ccccccccCcccccccCC
Confidence            36789999998899999999999876653     5899999987    3444556666643 333322223456799999


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCC-cEEEEecCCCCccHHHHHHHHHHhC-CCCCCcEEEe
Q 021932          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV  191 (305)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~-aiviv~tNPvd~lt~~~~~~~~~~s-~~p~~kviG~  191 (305)
                      +|+||+++|.|+++|++|.|++..|++++++++++|.+++|+ +++|++|||+|+||+++    ++.+ |+|++||+|+
T Consensus        80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~----~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA----SKSAPSIPKENFSCL  154 (154)
T ss_dssp             CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHH----HHHcCCCCHHHEeCC
Confidence            999999999999999999999999999999999999999975 56888999999999865    6666 9999999986

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.97  E-value=9.2e-31  Score=223.39  Aligned_cols=144  Identities=22%  Similarity=0.304  Sum_probs=123.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCCC----CchhhhhhhcccCCceEEEEecCCCHHHHhCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTG  114 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~-----~el~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~  114 (305)
                      .++.||+|+||+|+||+++++.|++.+++     .+|+|+|+++    ++|.++|++|+.. +.++....+++.+++++|
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~-~~~~~~~~~~~~~~~~~~  100 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY-PLLREVSIGIDPYEVFED  100 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccc-ccccCccccccchhhccC
Confidence            34569999999999999999999987653     3899999876    4788999999864 334433234566799999


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe
Q 021932          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV  191 (305)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~  191 (305)
                      +|+||+++|.|+++||+|.|++..|++|+++++++|.+++| +++|+++|||+|++|+++   +++++++|++||+||
T Consensus       101 aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia---~k~a~~ip~~~i~~m  175 (175)
T d7mdha1         101 VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC---LKNAPDIPAKNFHAL  175 (175)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEEC
T ss_pred             CceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHH---HHHCCCCCHHHEeCC
Confidence            99999999999999999999999999999999999999996 899999999999999875   244789999999986

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=1.1e-30  Score=218.45  Aligned_cols=142  Identities=25%  Similarity=0.446  Sum_probs=118.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcE-----EEEEeCCC----CchhhhhhhcccCCceEEEEecCCCHHHHhCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVN----TPGVTADISHMDTNAVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~e-----l~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~a  115 (305)
                      +|+||+||||+|+||+++++.|++++++++     +.|+|.+.    ..+.++|+.|... +..+.+..+++.+++++||
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a   81 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-PLLAGLEATDDPKVAFKDA   81 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccc-ccccccccCCchhhhcccc
Confidence            467999999889999999999999887654     55666554    4667788888753 3343332334556999999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEE
Q 021932          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG  190 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG  190 (305)
                      |+||+++|.++++|++|+|++..|+++++++++.|.+++| +++++++|||+|+||+++   +++++|||++|||.
T Consensus        82 dvViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a---~k~asg~p~~rvia  154 (154)
T d1y7ta1          82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTA  154 (154)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEE
T ss_pred             cEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHH---HHHcCCCcHHhccC
Confidence            9999999999999999999999999999999999999985 799999999999999875   34569999999985

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=3.2e-27  Score=200.26  Aligned_cols=139  Identities=18%  Similarity=0.203  Sum_probs=111.0

Q ss_pred             CCEEEEEcCCCchHHHHH--HHHHhCCC--CcEEEEEeCCC--Cchhhhhhhccc----CCceEEEEecCCCHHHHhCCC
Q 021932           46 GFKVAVLGAAGGIGQPLA--MLMKINPL--VSVLHLYDVVN--TPGVTADISHMD----TNAVVRGFLGQQQLEDALTGM  115 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la--~~L~~~~~--~~el~L~D~~~--~~g~~~DL~~~~----~~~~v~~~~~t~d~~~al~~a  115 (305)
                      ++||+|||| |++|.+.+  ..+.....  .+||+|+|+++  .++.++|+.|..    ....++... ++|++++++||
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~-~td~~~al~ga   78 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL-TLDRRRALDGA   78 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE-ESCHHHHHTTC
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeee-cCCchhhcCCC
Confidence            479999999 98886543  34444332  47999999988  578889987753    123344332 46778999999


Q ss_pred             CEEEEcCCCCCCCCCchhhH--------------------HHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHH
Q 021932          116 DIVIIPAGVPRKPGMTRDDL--------------------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE  175 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~--------------------~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~  175 (305)
                      |+||+++|.++++|++|.|+                    +.+|++++++++++|+++|||||++++|||+|+||+++  
T Consensus        79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~--  156 (169)
T d1s6ya1          79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV--  156 (169)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH--
T ss_pred             CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHH--
Confidence            99999999998888777766                    46899999999999999999999999999999998765  


Q ss_pred             HHHHhCCCCCCcEEEee
Q 021932          176 VFKKVGTYDPKRLLGVT  192 (305)
Q Consensus       176 ~~~~~s~~p~~kviG~t  192 (305)
                        ++.  +|++||||+|
T Consensus       157 --~k~--~p~~kviGlC  169 (169)
T d1s6ya1         157 --LRY--TKQEKVVGLC  169 (169)
T ss_dssp             --HHH--CCCCCEEECC
T ss_pred             --HHH--CCCCCEEeeC
Confidence              454  5889999997

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=5.2e-26  Score=192.25  Aligned_cols=138  Identities=18%  Similarity=0.217  Sum_probs=108.6

Q ss_pred             CCCEEEEEcCCCchHHHHHH--HHHhCC--CCcEEEEEeCCC--Cchhhhhhhccc--CCceEEEEecCCCHHHHhCCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAM--LMKINP--LVSVLHLYDVVN--TPGVTADISHMD--TNAVVRGFLGQQQLEDALTGMD  116 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~--~L~~~~--~~~el~L~D~~~--~~g~~~DL~~~~--~~~~v~~~~~t~d~~~al~~aD  116 (305)
                      +..||+|||| |.+|...+.  .+....  ..+||+|+|+++  +++.+.++.+..  .....+... ++|++++++|||
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~eal~~AD   79 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAA-TTDPEEAFTDVD   79 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEE-ESCHHHHHSSCS
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEe-cCChhhccCCCC
Confidence            4579999999 999987553  332222  247999999998  566667666643  223333222 458889999999


Q ss_pred             EEEEcCCCCCCCCCchhhHHH--------------------hhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHH
Q 021932          117 IVIIPAGVPRKPGMTRDDLFN--------------------INAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV  176 (305)
Q Consensus       117 iVIi~ag~~~~~g~~r~d~~~--------------------~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~  176 (305)
                      +||+++|.++++|++|.+++.                    +|+++++++++.|+++||+||++++|||+|++|+++   
T Consensus        80 ~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~---  156 (167)
T d1u8xx1          80 FVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEAT---  156 (167)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHH---
T ss_pred             EEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHH---
Confidence            999999999999999988764                    569999999999999999999999999999998765   


Q ss_pred             HHHhCCCCCCcEEE
Q 021932          177 FKKVGTYDPKRLLG  190 (305)
Q Consensus       177 ~~~~s~~p~~kviG  190 (305)
                       ++.  +|++|||.
T Consensus       157 -~k~--~P~~rVI~  167 (167)
T d1u8xx1         157 -RRL--RPNSKILN  167 (167)
T ss_dssp             -HHH--STTCCEEE
T ss_pred             -HHH--CCcccccC
Confidence             454  69999973

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=1.5e-26  Score=194.82  Aligned_cols=137  Identities=15%  Similarity=0.243  Sum_probs=104.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhC----CCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKIN----PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~----~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      |||+|||| |++|.+.++..+..    ...+||+|+|+++ ..+.+.|+.|........... +++.+++++|||+||++
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~-t~~~~~~l~~aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSSHHHHHTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE-ecCcccccCCCCEEEEe
Confidence            69999999 99999988644322    2357999999988 334566777654333333332 35667999999999999


Q ss_pred             CCCCCCCCCchhhHHHh--------------------hHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhC
Q 021932          122 AGVPRKPGMTRDDLFNI--------------------NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVG  181 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~--------------------N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s  181 (305)
                      +|.+++++++|.+++..                    +++.++++. ++.++||+||++++|||+|++|+++    ++. 
T Consensus        79 a~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~-~~~~~~p~a~~i~vtNPvdiit~~~----~~~-  152 (162)
T d1up7a1          79 FRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYV-DTVRKTSNATIVNFTNPSGHITEFV----RNY-  152 (162)
T ss_dssp             CCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHH-HHHHHTTCCEEEECSSSHHHHHHHH----HHT-
T ss_pred             cccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHh-hhhccCCCeEEEEeCCHHHHHHHHH----HHh-
Confidence            99999888888777655                    455666665 4788999999999999999998754    555 


Q ss_pred             CCCCCcEEEee
Q 021932          182 TYDPKRLLGVT  192 (305)
Q Consensus       182 ~~p~~kviG~t  192 (305)
                       +|++||||+|
T Consensus       153 -~p~~rviGlC  162 (162)
T d1up7a1         153 -LEYEKFIGLC  162 (162)
T ss_dssp             -TCCSSEEECC
T ss_pred             -CCCCCEEeeC
Confidence             5789999997

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2.4e-24  Score=182.63  Aligned_cols=137  Identities=20%  Similarity=0.198  Sum_probs=105.7

Q ss_pred             CCCEEEEEcCCCchHHHHHH--HHHhC-CC-CcEEEEEeCCC--Cchhhhhhhccc--CCceEEEEecCCCHHHHhCCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAM--LMKIN-PL-VSVLHLYDVVN--TPGVTADISHMD--TNAVVRGFLGQQQLEDALTGMD  116 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~--~L~~~-~~-~~el~L~D~~~--~~g~~~DL~~~~--~~~~v~~~~~t~d~~~al~~aD  116 (305)
                      +.|||+|||| |++|++++.  .++.. .+ .+||+|+|+++  +++.++|+.|..  .....+.. .++|++++++|||
T Consensus         1 p~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~-~~td~~eaL~dad   78 (171)
T d1obba1           1 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFE-KTMNLDDVIIDAD   78 (171)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEE-EESCHHHHHTTCS
T ss_pred             CCcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEE-EeCChhhcccCCC
Confidence            3589999999 999988654  24433 33 36999999997  677788888853  12333432 2468899999999


Q ss_pred             EEEEcCCC------------------CCCCCCchhhH--------HHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccH
Q 021932          117 IVIIPAGV------------------PRKPGMTRDDL--------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV  170 (305)
Q Consensus       117 iVIi~ag~------------------~~~~g~~r~d~--------~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt  170 (305)
                      +||++++.                  +++++++|.++        ..+|+++++++++.|+++||++|++++|||+|+||
T Consensus        79 ~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvdv~t  158 (171)
T d1obba1          79 FVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGT  158 (171)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHH
T ss_pred             eEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHHHHH
Confidence            99988654                  44556676664        46899999999999999999999999999999998


Q ss_pred             HHHHHHHHHhCCCCCCcEEE
Q 021932          171 PIAAEVFKKVGTYDPKRLLG  190 (305)
Q Consensus       171 ~~~~~~~~~~s~~p~~kviG  190 (305)
                      +.+    ++.+++   |+||
T Consensus       159 ~~~----~k~~~~---k~iG  171 (171)
T d1obba1         159 TLV----TRTVPI---KAVG  171 (171)
T ss_dssp             HHH----HHHSCS---EEEE
T ss_pred             HHH----HHhcCC---CccC
Confidence            765    666654   8887

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.83  E-value=3.6e-21  Score=162.16  Aligned_cols=113  Identities=58%  Similarity=0.921  Sum_probs=103.8

Q ss_pred             eeehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCch
Q 021932          191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (305)
Q Consensus       191 ~t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~  270 (305)
                      +|.|||+||+++||++|+++|++|++||+||||+++++|+||++.+++.+..++++++.++++++|++|++.|.+++++.
T Consensus         1 ~T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~~   80 (169)
T d1mlda2           1 VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSAT   80 (169)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCcChHh
Confidence            37899999999999999999999999999999877999999999887788889999999999999999999987778889


Q ss_pred             hHHHHHHHHHHHHHHccCCCCCceeEEEEEeeC
Q 021932          271 LSMAYAAAKFADACLRGLRGDAGVIECAYVAST  303 (305)
Q Consensus       271 ~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~s~  303 (305)
                      +++++++++++.+++.+.+++..+.+|++....
T Consensus        81 ~~~~~a~~~~~~~i~~~~~~~~~v~~~~~~~~~  113 (169)
T d1mlda2          81 LSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQ  113 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECC
T ss_pred             HHHHHHHHHHHHHhccccCCceEEEEEeecccc
Confidence            999999999999999988888888888887654

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.83  E-value=7.5e-21  Score=159.51  Aligned_cols=104  Identities=29%  Similarity=0.493  Sum_probs=93.6

Q ss_pred             ehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-----CCChhHHHHHHHHHHhchhhhhccccCCC
Q 021932          193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (305)
Q Consensus       193 ~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-----~~~~~~~~~i~~~v~~~g~~i~~~k~gkg  267 (305)
                      +||++||+++||+++|++|++|++|||||||+ +++|+||++++++     .++++.++++.++++++|++|++.+ |||
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-s~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQG   80 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccCHhhcccCCccccccCCHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            69999999999999999999999999999999 9999999999975     2567778899999999999999865 789


Q ss_pred             CchhHHHHHHHHHHHHHHccCCCCCceeEEEEEe
Q 021932          268 SATLSMAYAAAKFADACLRGLRGDAGVIECAYVA  301 (305)
Q Consensus       268 ~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~  301 (305)
                      ++.|++|.++.+++++++.+.+   .+++++.+-
T Consensus        81 sa~~a~~~~~~~~~~~i~~~~~---~~~~~~~~~  111 (163)
T d1guza2          81 SAFYAPASSVVEMVESIVLDRK---RVLPCAVGL  111 (163)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEE
T ss_pred             CcchhHHHHHHHHHHheeccCC---CEEEEeeee
Confidence            9999999999999999998865   677776654

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.3e-20  Score=158.24  Aligned_cols=113  Identities=63%  Similarity=0.930  Sum_probs=102.4

Q ss_pred             eeehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCch
Q 021932          191 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (305)
Q Consensus       191 ~t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~  270 (305)
                      +|.|||+||+++||+++|++|++|+++|+||||+++++|++|++.. ..++..+++++.+++|++|+++++.|.|++++.
T Consensus         1 ~T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~-~~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~~   79 (167)
T d2cmda2           1 VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPG-VSFTEQEVADLTKRIQNAGTEVVEAKAGGGSAT   79 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTT-CCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccC-CCCcHHHHHHHHHHHHhhhhhhhhhhccCcchH
Confidence            3789999999999999999999999999999999788888787654 357788899999999999999999888889999


Q ss_pred             hHHHHHHHHHHHHHHccCCCCCceeEEEEEeeCC
Q 021932          271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTV  304 (305)
Q Consensus       271 ~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~s~~  304 (305)
                      ||+|.++++++++|+.+.++...+..++|+.++.
T Consensus        80 ~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~  113 (167)
T d2cmda2          80 LSMGQAAARFGLSLVRALQGEQGVVECAYVEGDG  113 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHHhccCCCceEEEEEccccccc
Confidence            9999999999999999999898899999988753

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.81  E-value=2.9e-20  Score=157.20  Aligned_cols=107  Identities=28%  Similarity=0.467  Sum_probs=92.2

Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----------CCChhHHHHHHHHHHhchhhhhc
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVE  261 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~  261 (305)
                      |+||++||+++||++||++|++|+++||||||+ ++||+||++++.+          .....++.+....++.+|..++.
T Consensus         2 c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (174)
T d1pzga2           2 CMLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR   80 (174)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhCcCHHHcEEEEEccCCC-ccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEee
Confidence            789999999999999999999999999999999 9999999999864          13344566777778888888887


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEEeeC
Q 021932          262 AKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAST  303 (305)
Q Consensus       262 ~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~s~  303 (305)
                      .+ ++|++.|++|.++++++++|+.+.   +.+++|+.+.++
T Consensus        81 ~~-~~gst~~~~a~a~~~~~~~i~~~~---~~~~~~s~~~~~  118 (174)
T d1pzga2          81 FL-GQGSAYYAPAASAVAMATSFLNDE---KRVIPCSVYCNG  118 (174)
T ss_dssp             HH-SSSCCCHHHHHHHHHHHHHHHTTC---CEEEEEEEEEES
T ss_pred             ee-cccchhhhhHHHHHHHHHhhcccC---CceEEeeecccc
Confidence            65 689999999999999999999986   478888876553

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.81  E-value=3e-20  Score=155.88  Aligned_cols=102  Identities=29%  Similarity=0.468  Sum_probs=91.6

Q ss_pred             ehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-----CCChhHHHHHHHHHHhchhhhhccccCCC
Q 021932          193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAG  267 (305)
Q Consensus       193 ~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-----~~~~~~~~~i~~~v~~~g~~i~~~k~gkg  267 (305)
                      .||++||+++||++||++|++|+++||||||+ ++||+||++++++     .++++.++++.++++++|++|++++ +||
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGD-EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTG   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ceeeeeeeeecCCCchhhccchhhHHHHHHHHHHHHHHHHHHH-hcC
Confidence            59999999999999999999999999999999 9999999999865     2456678999999999999999876 689


Q ss_pred             CchhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          268 SATLSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       268 ~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      ++.|++|.++++|+++|+.+.+   .+++++.
T Consensus        81 s~~~a~a~a~~~i~~~i~~~~~---~~~~~~~  109 (164)
T d1uxja2          81 SAYYAPAAATAQMVEAVLKDKK---RVMPVAA  109 (164)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEE
T ss_pred             cccchHHHHHHHHHHHHhCCCC---ceeeeee
Confidence            9999999999999999999875   5666554

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.80  E-value=2.5e-20  Score=154.54  Aligned_cols=95  Identities=15%  Similarity=0.208  Sum_probs=83.0

Q ss_pred             eehhhHHHHHHHHHHhCCCCcce-eEEEEcccCCcceeeccccCCCCCCCChhHHHHHHHHHHhchhhhhccccCCCCch
Q 021932          192 TMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT  270 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V-~~~vlG~hg~~t~vp~~S~~~v~~~~~~~~~~~i~~~v~~~g~~i~~~k~gkg~t~  270 (305)
                      |.|||+|||++|++..   +.++ ++|||||||| ++||+||.+++.+.   .++++|.+++|.+|++|++.   ||+|+
T Consensus         2 t~LDsaR~r~~l~~~~---~~~v~~a~ViGeHGd-s~vp~~S~~~i~g~---~~~~~i~~~v~~~g~eIi~~---kG~t~   71 (152)
T d1ojua2           2 NQLDSQRLKERLYNAG---ARNIRRAWIIGEHGD-SMFVAKSLADFDGE---VDWEAVENDVRFVAAEVIKR---KGATI   71 (152)
T ss_dssp             HHHHHHHHHHHHHHTT---CBSCCCCCEEBCSST-TCEECGGGCCCBSC---CCHHHHHHHHHTTHHHHHHH---HSSCC
T ss_pred             CccHHHHHHHHHHccC---CCCcceeEEEecCCC-ccccccccccccCc---cchhHhHHHHHHHHHHhhhh---cccee
Confidence            5799999999998765   4455 8999999999 99999999998653   34678999999999999995   48999


Q ss_pred             hHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          271 LSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       271 ~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      ||+|.++++|+++|++|.+   .++|||.
T Consensus        72 ~gia~a~~~iv~aIl~d~~---~v~pvs~   97 (152)
T d1ojua2          72 FGPAVAIYRMVKAVVEDTG---EIIPTSM   97 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---CEEEEEE
T ss_pred             ccHHHHHHHHHHHHHhcCC---CceeeeE
Confidence            9999999999999999964   7999874

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.80  E-value=9.1e-20  Score=153.57  Aligned_cols=100  Identities=16%  Similarity=0.353  Sum_probs=87.9

Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-------------CCChhHHHHHHHHHHhchhh
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-------------SLTPTEIDYLTDRIQNGGTE  258 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-------------~~~~~~~~~i~~~v~~~g~~  258 (305)
                      |.||++||+++||+++|+++++|+++|||+||+ ++||+||++++++             .++...++++.++++++|++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~   79 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK   79 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence            679999999999999999999999999999999 9999999998853             13445678999999999999


Q ss_pred             hhccccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEE
Q 021932          259 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA  298 (305)
Q Consensus       259 i~~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a  298 (305)
                      |++.   ||++.|++|.++++++++|+.+.+   .+++++
T Consensus        80 i~~~---kg~t~~~~a~~~~~~~~~i~~~~~---~~~~~~  113 (170)
T d1llda2          80 IING---KGATNYAIGMSGVDIIEAVLHDTN---RILPVS  113 (170)
T ss_dssp             HHTS---CCSCCHHHHHHHHHHHHHHHTTCC---EEEEEE
T ss_pred             HHhh---hccchhhhHHHHHHHHHHHHcCCC---ceeeee
Confidence            9985   588999999999999999999864   455554

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.80  E-value=8.6e-20  Score=156.52  Aligned_cols=104  Identities=21%  Similarity=0.173  Sum_probs=87.4

Q ss_pred             eehhhHHHHHHHHHHhCCCCccee-EEEEcccCCcceeeccccCCCCC-----CCChhH--HHHHHHHHHhchhhhhccc
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-----SLTPTE--IDYLTDRIQNGGTEVVEAK  263 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~hg~~t~vp~~S~~~v~~-----~~~~~~--~~~i~~~v~~~g~~i~~~k  263 (305)
                      |.||++||+++||++|||+|++|+ .+||||||+ ++||+||++++.+     .+.+++  ++++.+.++++|+++++.|
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGd-s~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~k   79 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW   79 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCC-cEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhh
Confidence            679999999999999999999997 568899999 9999999999865     133333  4789999999999999986


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          264 TGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       264 ~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                        ++++.+++|.|+++++++|+++.+.. .+++++.
T Consensus        80 --g~s~~~s~A~A~~~~~~ai~~~~~~~-~~~s~~v  112 (188)
T d7mdha2          80 --GRSSAASTAVSIADAIKSLVTPTPEG-DWFSTGV  112 (188)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHHSCCCTT-CCEEEEE
T ss_pred             --cccchhhHHHHHHHHHHHHHcCCCCC-ceEEEEE
Confidence              35677789999999999999998633 3566533

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.77  E-value=2.2e-19  Score=152.71  Aligned_cols=106  Identities=23%  Similarity=0.225  Sum_probs=87.3

Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeEE-EEcccCCcceeeccccCCCCC-C----------CChhHHHHHHHHHHhchhhh
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVKPSC-S----------LTPTEIDYLTDRIQNGGTEV  259 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~~-vlG~hg~~t~vp~~S~~~v~~-~----------~~~~~~~~i~~~v~~~g~~i  259 (305)
                      |.||++|||++||++|||+|++|+++ ||||||+ ++||+||++++++ +          .+....+++.+.++++++.|
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~-s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCC-cccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhh
Confidence            67999999999999999999999875 5599999 9999999999854 1          12233568999999999999


Q ss_pred             hccccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEEee
Q 021932          260 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS  302 (305)
Q Consensus       260 ~~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~s  302 (305)
                      ++.|  ++++.|++|.|+++++++|+.+.+... ++++ +|.+
T Consensus        80 ~~~~--~~ss~~~~a~a~~~~~~~i~~~~~~~~-~~s~-~v~~  118 (179)
T d5mdha2          80 IKAR--KLSSAMSAAKAICDHVRDIWFGTPEGE-FVSM-GIIS  118 (179)
T ss_dssp             HHHH--SSCCCHHHHHHHHHHHHHHHHCCCTTC-CEEE-EEEC
T ss_pred             hhcc--CcchHHHHHHHHHHHHHHHHhhcccCC-ceeE-EEEc
Confidence            9976  478889999999999999999987443 4443 4443

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.77  E-value=2.7e-19  Score=149.60  Aligned_cols=102  Identities=23%  Similarity=0.334  Sum_probs=87.9

Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCC-----C--ChhHHHHHHHHHHhchhhhhcccc
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----L--TPTEIDYLTDRIQNGGTEVVEAKT  264 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~-----~--~~~~~~~i~~~v~~~g~~i~~~k~  264 (305)
                      |.||++||+++||+++|++|++|+++|||+||+ ++||+||++++.+.     +  .+.+++++.+++++++++|++.  
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~--   78 (163)
T d1hyha2           2 TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNG--   78 (163)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHH--
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHHH--
Confidence            579999999999999999999999999999999 99999999998641     2  2234689999999999999986  


Q ss_pred             CCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          265 GAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       265 gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                       ||++.|++|.++.++++++..+.+   .+.+++.+
T Consensus        79 -kg~~~~~~a~~~~~~~~~~~~~~~---~~~~~s~~  110 (163)
T d1hyha2          79 -KGYTSYGVATSAIRIAKAVMADAH---AELVVSNR  110 (163)
T ss_dssp             -HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEE
T ss_pred             -HHhHHHhHHHHhhHHHHHhcCCcc---ceeeecee
Confidence             478999999999999999999864   56666554

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.76  E-value=6.9e-19  Score=148.06  Aligned_cols=94  Identities=21%  Similarity=0.368  Sum_probs=85.7

Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----------CCChhHHHHHHHHHHhchhhhhc
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVE  261 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~  261 (305)
                      |.||++||+++||+++|++|++|+++|||+||+ ++||+||++++.+          .+..++++++.++++.+++++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   79 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN   79 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccCCC-cccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence            679999999999999999999999999999999 9999999999864          25666788999999999999988


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHccCC
Q 021932          262 AKTGAGSATLSMAYAAAKFADACLRGLR  289 (305)
Q Consensus       262 ~k~gkg~t~~s~A~a~~~~~~ai~~~~~  289 (305)
                      .   ||++.|++|.++++++++++.+..
T Consensus        80 ~---k~s~~~a~a~~~~~~~~~i~~~~~  104 (171)
T d1ez4a2          80 L---KGATFYGIGTALMRISKAILRDEN  104 (171)
T ss_dssp             H---HSCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             h---hhhHhHHHHHHHHHHHHHHhccCC
Confidence            5   489999999999999999999864

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.76  E-value=3e-19  Score=150.31  Aligned_cols=101  Identities=20%  Similarity=0.379  Sum_probs=86.6

Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCC------------CChhHHHHHHHHHHhchhhh
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS------------LTPTEIDYLTDRIQNGGTEV  259 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~------------~~~~~~~~i~~~v~~~g~~i  259 (305)
                      |.||++||+++||+++|++|++|+++||||||+ +++|+||++++++.            ++.++++++.++++++++++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI   79 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccCCC-CCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence            679999999999999999999999999999999 99999999998531            23345679999999999999


Q ss_pred             hccccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          260 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       260 ~~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      ++.   ++++.|++|.++++++++++.|.+   .+++|+-
T Consensus        80 ~~~---~~s~~~a~a~~~~~~~~~i~~~~~---~~~~~~~  113 (169)
T d1y6ja2          80 IKN---KGATYYGIAVSINTIVETLLKNQN---TIRTVGT  113 (169)
T ss_dssp             HHH---TSCCCHHHHHHHHHHHHHHHHTCC---CEECCEE
T ss_pred             hhh---hhhhhhHHHHHHHHHHHHhccCCC---Cceeeee
Confidence            885   589999999999999999999964   5666643

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=1.4e-18  Score=146.33  Aligned_cols=100  Identities=23%  Similarity=0.409  Sum_probs=88.3

Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-----------CCChhHHHHHHHHHHhchhhhh
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVV  260 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~g~~i~  260 (305)
                      |.||++||+++||+++|++|.+|+++|||+||+ +++|+||++++.+           .++.+.++++.+.++.+|++++
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (172)
T d1a5za2           2 TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEII   80 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEecCCC-CcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeEe
Confidence            679999999999999999999999999999999 9999999999853           2456667899999999999999


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEE
Q 021932          261 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA  298 (305)
Q Consensus       261 ~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a  298 (305)
                      +.   |+++.|++|.++++++.+++.+.+   .+.+++
T Consensus        81 ~~---~~~~~~~~a~a~~~~~~~~~~~~~---~~~~~~  112 (172)
T d1a5za2          81 ER---KGATHYAIALAVADIVESIFFDEK---RVLTLS  112 (172)
T ss_dssp             HH---HSCCCHHHHHHHHHHHHHHHTTCC---EEEEEE
T ss_pred             ec---cccchhhHHHHHHHHHHHHHhhcc---cceeee
Confidence            85   478999999999999999998864   566554

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.75  E-value=2.2e-18  Score=143.05  Aligned_cols=103  Identities=21%  Similarity=0.340  Sum_probs=90.0

Q ss_pred             EEeeehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC---CCChhHHHHHHHHHHhchhhhhccccC
Q 021932          189 LGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC---SLTPTEIDYLTDRIQNGGTEVVEAKTG  265 (305)
Q Consensus       189 iG~t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~---~~~~~~~~~i~~~v~~~g~~i~~~k~g  265 (305)
                      || |+||++||+++||+++|++|++|+++|||+||+ +++|+||++.+.+   .+..++++++.++++..++++++.   
T Consensus         1 ~G-t~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---   75 (161)
T d1o6za2           1 FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIER---   75 (161)
T ss_dssp             CC-HHHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHTT---
T ss_pred             CC-chHHHHHHHHHHHHHHCcCHHHeEEEEEeCCCC-ceeeehhhhcccccccccchHHHHHHHHHhhhhHHHHHHh---
Confidence            46 889999999999999999999999999999999 9999999999854   356677889999999999999884   


Q ss_pred             CCCchhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       266 kg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      ++++.+++|+++++++.+++.+.+   ...+++.
T Consensus        76 ~~~s~~~~a~a~~~~~~~~~~~~~---~~~~~~~  106 (161)
T d1o6za2          76 KGATEWGPARGVAHMVEAILHDTG---EVLPASV  106 (161)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHTTCC---CEEEEEE
T ss_pred             hhhhhhHHHHhhHhhhHhhhhccc---cceeecc
Confidence            578999999999999999998864   4555544

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.75  E-value=9.7e-19  Score=147.20  Aligned_cols=103  Identities=18%  Similarity=0.293  Sum_probs=90.0

Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC------------CCChhHHHHHHHHHHhchhhh
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEV  259 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~g~~i  259 (305)
                      |.||++||+++||+++|++|++|+++|||+||+ ++||+||++++.+            ..+.+.++++.+++++++.++
T Consensus         3 T~LDs~R~~~~lA~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d1i0za2           3 CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGD-SSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCcCHHHceEEEEccCCC-cccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEEe
Confidence            679999999999999999999999999999999 9999999999853            122345688999999999999


Q ss_pred             hccccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEEe
Q 021932          260 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVA  301 (305)
Q Consensus       260 ~~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~  301 (305)
                      ++.+   +++.|++|.++++++++++.+.   +.+++|+++-
T Consensus        82 ~~~~---~~s~~a~a~~~~~~~~~~~~~~---~~v~~~~~~~  117 (172)
T d1i0za2          82 IKLK---GYTNWAIGLSVADLIESMLKNL---SRIHPVSTMV  117 (172)
T ss_dssp             HHHH---SSCCHHHHHHHHHHHHHHHTTC---CEEEEEEEEC
T ss_pred             eecc---cccchHHHHHHHHHHHHHhcCC---Ccccccceec
Confidence            9854   7899999999999999999884   4788887654

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.74  E-value=3.1e-18  Score=143.50  Aligned_cols=102  Identities=25%  Similarity=0.443  Sum_probs=88.5

Q ss_pred             ehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC----------CCChhHHHHHHHHHHhchhhhhcc
Q 021932          193 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEA  262 (305)
Q Consensus       193 ~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~g~~i~~~  262 (305)
                      .||++||+++||+++|++|++|+++|||+||+ +++|+||++++.+          ...+++++++.+.++++++++++.
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   80 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL   80 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhhh
Confidence            58999999999999999999999999999999 9999999998753          245667788999999999999985


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEE-EEe
Q 021932          263 KTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVA  301 (305)
Q Consensus       263 k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a-~v~  301 (305)
                         ++++.|++|.+++.++++++.+.+   .+++++ |++
T Consensus        81 ---~~~~~~a~a~a~~~~~~~i~~~~~---~~~~~~v~~~  114 (165)
T d1t2da2          81 ---HASPYVAPAAAIIEMAESYLKDLK---KVLICSTLLE  114 (165)
T ss_dssp             ---TSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEE
T ss_pred             ---ccceeechhHHHHHHHHHHhhccc---cceeeeeccc
Confidence               578999999999999999999975   455543 443

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.72  E-value=9.9e-19  Score=147.33  Aligned_cols=94  Identities=22%  Similarity=0.367  Sum_probs=82.5

Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCC-----------CChhHHHHHHHHHHhchhhhh
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----------LTPTEIDYLTDRIQNGGTEVV  260 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~-----------~~~~~~~~i~~~v~~~g~~i~  260 (305)
                      |.||++||+++||+++|+++++|+++||||||+ +++|+||++++.+.           +..+.++++.+++++++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSSSS-SCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence            679999999999999999999999999999999 99999999988541           122334678888999999998


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHccCC
Q 021932          261 EAKTGAGSATLSMAYAAAKFADACLRGLR  289 (305)
Q Consensus       261 ~~k~gkg~t~~s~A~a~~~~~~ai~~~~~  289 (305)
                      +.   ||++.|++|.++++++++++.+..
T Consensus        80 ~~---kg~~~~a~a~~~~~~~~~~~~~~~  105 (172)
T d1llca2          80 KL---KGATFYGIATALARISKAILNDEN  105 (172)
T ss_dssp             SS---SSCTTHHHHHHHHHHHHHHHHTCC
T ss_pred             Hh---hhhhhhhhHHHHHHHHHHHhcCCC
Confidence            84   689999999999999999999975

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=3.3e-18  Score=143.46  Aligned_cols=94  Identities=21%  Similarity=0.380  Sum_probs=77.9

Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCC----C---ChhHHHHHHHHHHhchhhhhcccc
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS----L---TPTEIDYLTDRIQNGGTEVVEAKT  264 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~----~---~~~~~~~i~~~v~~~g~~i~~~k~  264 (305)
                      |.||++||+++||++||++|++|+++||||||+ ++||+||++++++.    +   ....++++.++++++++.+++.  
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   79 (168)
T d1hyea2           3 THLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRL--   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHHh--
Confidence            689999999999999999999999999999999 99999999998641    1   1223578999999999999875  


Q ss_pred             CCCCchhHHHHHHHHHHHHHHccCC
Q 021932          265 GAGSATLSMAYAAAKFADACLRGLR  289 (305)
Q Consensus       265 gkg~t~~s~A~a~~~~~~ai~~~~~  289 (305)
                       |+++.|++|.+++.++++++.+.+
T Consensus        80 -k~~~~~~~a~~~~~~~~~~~~~~~  103 (168)
T d1hyea2          80 -KGGSEFGPAAAILNVVRCIVNNEK  103 (168)
T ss_dssp             ------CCHHHHHHHHHHHHHTTCC
T ss_pred             -ccCccccchhhhhHHHHhhhccCC
Confidence             478889999999999999999864

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=8.1e-18  Score=141.75  Aligned_cols=106  Identities=22%  Similarity=0.238  Sum_probs=84.4

Q ss_pred             eeehhhHHHHHHHHHHhCCCCcceeEE-EEcccCCcceeeccccCCCCC----CC-Chh-HHHHHHHHHHhchhhhhccc
Q 021932          191 VTMLDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVKPSC----SL-TPT-EIDYLTDRIQNGGTEVVEAK  263 (305)
Q Consensus       191 ~t~Lds~R~~~~la~~l~v~~~~V~~~-vlG~hg~~t~vp~~S~~~v~~----~~-~~~-~~~~i~~~v~~~g~~i~~~k  263 (305)
                      +|.|||+|||++||++|+++|++|+++ ||||||+ +++|+||++++.+    .+ .+. ..++..++...+++.++..+
T Consensus         1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~-s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (173)
T d1y7ta2           1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR   79 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCc-cEEeeeeeeeEcCccHHHhcccccccchhhhhhhhhHHHHHHHh
Confidence            478999999999999999999999975 6799999 9999999999865    12 222 23455555666666666654


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          264 TGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       264 ~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                        ++++.|++|.++++++++|+.+.. +..+++|+.+
T Consensus        80 --~~~s~~~~a~a~~~~~~~~~~~~~-~~~~~~~~v~  113 (173)
T d1y7ta2          80 --GASSAASAANAAIEHIRDWALGTP-EGDWVSMAVP  113 (173)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHHTBCC-TTCCEEEEEE
T ss_pred             --ccCchhhHHHHHHHHHHHHhcccC-CCCceeeEEE
Confidence              578999999999999999999865 4458888664

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.71  E-value=1.1e-17  Score=140.02  Aligned_cols=102  Identities=20%  Similarity=0.382  Sum_probs=86.1

Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-CC----------ChhHHHHHHHHHHhchhhhh
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-SL----------TPTEIDYLTDRIQNGGTEVV  260 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~~----------~~~~~~~i~~~v~~~g~~i~  260 (305)
                      |.||++||+++||++||++|++|+++|||+||+ ++||+||++++.+ .+          ....++++.+.++..+++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-ccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence            679999999999999999999999999999999 9999999999853 11          12235688888999999988


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEE
Q 021932          261 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV  300 (305)
Q Consensus       261 ~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v  300 (305)
                      +.   |+++.|+++.++.+++++++.+.+   .+.+++..
T Consensus        80 ~~---~~~s~~~~a~~~~~~~~~~~~~~~---~~~~~~~~  113 (168)
T d1ldna2          80 EK---KGATYYGIAMGLARVTRAILHNEN---AILTVSAY  113 (168)
T ss_dssp             HH---HSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEE
T ss_pred             Hh---hccccchHHHHHhhHHHhhhcccc---eeeeeeee
Confidence            85   478999999999999999998854   56666543

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=3.9e-17  Score=136.90  Aligned_cols=101  Identities=22%  Similarity=0.363  Sum_probs=85.7

Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCC-C-----------CChhHHHHHHHHHHhchhhh
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-S-----------LTPTEIDYLTDRIQNGGTEV  259 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~-~-----------~~~~~~~~i~~~v~~~g~~i  259 (305)
                      |.||++||++++|+++|++|++|+++|||+||+ +++|+||++++++ +           ...+..+++.+.++..+.++
T Consensus         3 T~LD~~R~~~~vA~~l~v~~~~V~~~ViG~Hs~-~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d2ldxa2           3 CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGD-SSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCTTSSCCCEEECSSS-CEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCcCHHHcEEEEEcCCCC-ccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceeeh
Confidence            679999999999999999999999999999999 9999999999853 1           11223468889999999998


Q ss_pred             hccccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          260 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       260 ~~~k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                      +..   |+++.|++|.+++.++.+++.+.   +.+++++.
T Consensus        82 ~~~---k~~s~~~~a~~~~~~~~~~~~~~---~~~~~~~~  115 (172)
T d2ldxa2          82 LDM---KGYTSWAIGLSVTDLARSILKNL---KRVHPVTT  115 (172)
T ss_dssp             HHH---HSSCCHHHHHHHHHHHHHHHTTC---CEEEEEEE
T ss_pred             hhc---ccchhHHHHHHHhHHHHhhcCCC---ccceeeee
Confidence            885   47899999999999999999875   35666654

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.67  E-value=2.2e-17  Score=138.27  Aligned_cols=101  Identities=18%  Similarity=0.263  Sum_probs=84.4

Q ss_pred             eehhhHHHHHHHHHHhCCCCcceeEEEEcccCCcceeeccccCCCCCC---------CChhHHHHHHHHHHhchhhhhcc
Q 021932          192 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---------LTPTEIDYLTDRIQNGGTEVVEA  262 (305)
Q Consensus       192 t~Lds~R~~~~la~~l~v~~~~V~~~vlG~hg~~t~vp~~S~~~v~~~---------~~~~~~~~i~~~v~~~g~~i~~~  262 (305)
                      |.||++||+++||++|+++|++|+++||||||+ +++|+||++++.+.         ...+.+.++.++++.+++++...
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (169)
T d1ldma2           3 CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGD-SVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKL   81 (169)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCBCBCSST-TCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCc-cchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEecc
Confidence            679999999999999999999999999999999 99999999998541         12233456777788888888774


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEE
Q 021932          263 KTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY  299 (305)
Q Consensus       263 k~gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~  299 (305)
                         ++++.|++|.++++++++++.+.+   .+++|+.
T Consensus        82 ---~~s~~~a~a~~~~~~~~~~~~~~~---~~~~~~~  112 (169)
T d1ldma2          82 ---KGYTSWAIGLSVADLAETIMKNLC---RVHPVST  112 (169)
T ss_dssp             ---HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEE
T ss_pred             ---ccchhhHHHHHHhhhhheecCCCC---ceeeeee
Confidence               478999999999999999999864   5777654

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.56  E-value=4.3e-15  Score=124.44  Aligned_cols=104  Identities=18%  Similarity=0.184  Sum_probs=73.6

Q ss_pred             ehhhHHHHHHHHHHhCCCCcceeE-EEEcccCCcceeeccccCCCCCC-----CChh--HHHHHHHHHHhchhhhhcccc
Q 021932          193 MLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPSCS-----LTPT--EIDYLTDRIQNGGTEVVEAKT  264 (305)
Q Consensus       193 ~Lds~R~~~~la~~l~v~~~~V~~-~vlG~hg~~t~vp~~S~~~v~~~-----~~~~--~~~~i~~~v~~~g~~i~~~k~  264 (305)
                      .||++||+++||++||++|++|++ +||||||+ +++|+||++++.+.     ..+.  ..+++.+.+++++..+.+.+ 
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~-s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-   79 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCC-cEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHH-
Confidence            489999999999999999999985 78899999 99999999998641     1112  23567777777888887765 


Q ss_pred             CCCCchhHHHHHHHHHHHHHHccCCCCCceeEEEEEe
Q 021932          265 GAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVA  301 (305)
Q Consensus       265 gkg~t~~s~A~a~~~~~~ai~~~~~~~~~i~~~a~v~  301 (305)
                      +++++.++.++++..+.++| .+.+  +.+++|+.+.
T Consensus        80 ~~~~~~~~~~a~~~~~~~~i-~~~~--~~~~~~s~~~  113 (171)
T d1b8pa2          80 GVSSAASAANAAIDHIHDWV-LGTA--GKWTTMGIPS  113 (171)
T ss_dssp             SSCCHHHHHHHHHHHHHHHH-HCCT--TCCEEEEEEC
T ss_pred             hhhhhhhhhHHHHHHHHHHH-hCCC--ccceeEEEEe
Confidence            44444444444554455554 4433  3467776543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3e-10  Score=96.41  Aligned_cols=122  Identities=16%  Similarity=0.209  Sum_probs=86.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C--chh--hh-hhhc---cc--------------CCceEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TA-DISH---MD--------------TNAVVRG  101 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~--~g~--~~-DL~~---~~--------------~~~~v~~  101 (305)
                      ..+||+|||| |.+|+.+|..++..|+  +|+++|+++ .  .+.  .. .+..   ..              ...++..
T Consensus         3 ~IkkvaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~   79 (192)
T d1f0ya2           3 IVKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   79 (192)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             eeEEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc
Confidence            3469999999 9999999999999999  999999986 1  111  00 0110   00              0123443


Q ss_pred             EecCCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHh
Q 021932          102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKV  180 (305)
Q Consensus       102 ~~~t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tNPvd~lt~~~~~~~~~~  180 (305)
                         ++|+.+++++||+|+.++              .+|.++.+++...+++++| ++++  +||-..+...   +. ...
T Consensus        80 ---~~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~i~---~l-a~~  136 (192)
T d1f0ya2          80 ---STDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHTIF--ASNTSSLQIT---SI-ANA  136 (192)
T ss_dssp             ---ESCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTCEE--EECCSSSCHH---HH-HTT
T ss_pred             ---cchhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccCcee--eccCcccccc---hh-hhh
Confidence               357889999999999985              3478999999999999994 6655  7887766542   22 223


Q ss_pred             CCCCCCcEEEeee
Q 021932          181 GTYDPKRLLGVTM  193 (305)
Q Consensus       181 s~~p~~kviG~t~  193 (305)
                      . -.|+|++|+..
T Consensus       137 ~-~~p~r~ig~Hf  148 (192)
T d1f0ya2         137 T-TRQDRFAGLHF  148 (192)
T ss_dssp             S-SCGGGEEEEEE
T ss_pred             c-cCHhHEEeecc
Confidence            3 35789999853

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.94  E-value=4.2e-10  Score=94.99  Aligned_cols=121  Identities=18%  Similarity=0.239  Sum_probs=84.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C--ch--hhhh-hhc---cc---------CCceEEEEecCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PG--VTAD-ISH---MD---------TNAVVRGFLGQQ  106 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~--~g--~~~D-L~~---~~---------~~~~v~~~~~t~  106 (305)
                      +.+||+|||| |.+|+.+|..++..|+  +|+++|+++ .  .+  ...+ +.+   ..         ...++..   ++
T Consensus         3 ~I~~vaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~   76 (186)
T d1wdka3           3 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TL   76 (186)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ES
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec---cc
Confidence            3458999999 9999999999999999  999999986 1  11  1111 111   00         0123443   34


Q ss_pred             CHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 021932          107 QLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (305)
Q Consensus       107 d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~aiviv~tNPvd~lt~~~~~~~~~~s~~p~  185 (305)
                      ++ +++.+||+||.++              .+|.++.+++..+|++++| ++++  +||-..+...-+    ..... .|
T Consensus        77 ~~-~~~~~adlViEav--------------~E~l~~K~~lf~~l~~~~~~~~Ii--aSnTS~l~i~~l----a~~~~-~p  134 (186)
T d1wdka3          77 SY-GDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDAIL--ASNTSTISISLL----AKALK-RP  134 (186)
T ss_dssp             SS-TTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCEE--EECCSSSCHHHH----GGGCS-CG
T ss_pred             cc-ccccccceeeeee--------------cchHHHHHHHHHHHHhhcCCCeeE--EeccccccHHHH----HHhcc-Cc
Confidence            54 6799999999985              2478999999999999995 6655  788877654322    22333 46


Q ss_pred             CcEEEeee
Q 021932          186 KRLLGVTM  193 (305)
Q Consensus       186 ~kviG~t~  193 (305)
                      +|++|+..
T Consensus       135 ~r~~g~Hf  142 (186)
T d1wdka3         135 ENFVGMHF  142 (186)
T ss_dssp             GGEEEEEC
T ss_pred             hheEeecc
Confidence            89999853

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.85  E-value=9.8e-09  Score=87.19  Aligned_cols=129  Identities=13%  Similarity=0.170  Sum_probs=80.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--c----hh-------hhh-hhcccCCceEEEEecCCCHHHHh
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--P----GV-------TAD-ISHMDTNAVVRGFLGQQQLEDAL  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~----g~-------~~D-L~~~~~~~~v~~~~~t~d~~~al  112 (305)
                      |||+|||+ |+||.++|..|+..|+  +|+.+|+++.  .    |.       ..+ +.......++..   ++|+++++
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~--~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~---~~~~~~~i   74 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKKAV   74 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHHHH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCC--cEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhccccccc---CCCHHHHH
Confidence            79999998 9999999999999999  9999999861  0    10       011 111111233443   35788999


Q ss_pred             CCCCEEEEcCCCCCCCC-CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-cCCCCccHHHHHHHHHHhCCCC
Q 021932          113 TGMDIVIIPAGVPRKPG-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVNSTVPIAAEVFKKVGTYD  184 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g-~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~-tNPvd~lt~~~~~~~~~~s~~p  184 (305)
                      ++||+++++.++|.... ......+   ..+.+.+.+.++...++.++++- |-|....-.++..++.+.++..
T Consensus        75 ~~~d~i~i~VpTP~~~~~~~d~~~~---~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~  145 (202)
T d1mv8a2          75 LDSDVSFICVGTPSKKNGDLDLGYI---ETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKK  145 (202)
T ss_dssp             HTCSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCC
T ss_pred             hhCCEEEEecCccccccccccchhh---hhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhcccccc
Confidence            99999999999885432 2222222   23444455555555567666554 5677665544444444444433

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=5.8e-08  Score=87.69  Aligned_cols=114  Identities=18%  Similarity=0.162  Sum_probs=77.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecC-C---CHHHHhC--CCCEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ-Q---QLEDALT--GMDIV  118 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t-~---d~~~al~--~aDiV  118 (305)
                      |||.|+||+|++|+.++..|+..|+  +|+++|+..  .......+.+.. ...+..+.+. .   .+.++++  ++|+|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~~~~d~V   77 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhc-CCCCEEEEeecCCHHHHHHHHhccCCCEE
Confidence            7999999999999999999999998  999999743  222222222221 1223322111 2   3445566  78999


Q ss_pred             EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       119 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |.+|+....+  -++..+.+..|+...+++++.+++++.+.+|...|
T Consensus        78 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss  124 (338)
T d1udca_          78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSS  124 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCc
Confidence            9999754211  02345678899999999999999998776665554

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.64  E-value=5.2e-08  Score=79.56  Aligned_cols=90  Identities=21%  Similarity=0.223  Sum_probs=61.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      |||+|||+ |.+|+++|..|...|+  +|+.+|+++. ...+.++.-.    . . .  .++. +++++||+||++.  |
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~~~----~-~-~--~~~~-~~~~~~DiIilav--p   66 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQLV----D-E-A--GQDL-SLLQTAKIIFLCT--P   66 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTTSC----S-E-E--ESCG-GGGTTCSEEEECS--C
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhhcc----c-e-e--eeec-ccccccccccccC--c
Confidence            79999998 9999999999999999  9999999752 1112211111    1 1 1  1243 7899999999985  2


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                                    ...+.++++++.++- ++.+|+.+++
T Consensus        67 --------------~~~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          67 --------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             --------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence                          234566677777765 6666665543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.62  E-value=3.1e-08  Score=81.53  Aligned_cols=100  Identities=16%  Similarity=0.161  Sum_probs=65.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhhhhcc---cCCceEEE--EecCCCHHHHhCCCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM---DTNAVVRG--FLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~DL~~~---~~~~~v~~--~~~t~d~~~al~~aDiVIi  120 (305)
                      +||+|||+ |.+|..+|..|.+.|+  +|.+||+++.+ ....+....   ........  ...++|.+++++++|+||+
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            59999999 9999999999999999  99999997521 111111000   00011110  1113577899999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNP  165 (305)
                      +...                ....+++++++++- ++.+|+...|.
T Consensus        79 ~v~~----------------~~~~~~~~~i~~~l~~~~~iv~~~g~  108 (184)
T d1bg6a2          79 VVPA----------------IHHASIAANIASYISEGQLIILNPGA  108 (184)
T ss_dssp             CSCG----------------GGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred             EEch----------------hHHHHHHHHhhhccCCCCEEEEeCCC
Confidence            8521                12456777888776 67766554444

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.5e-07  Score=77.80  Aligned_cols=104  Identities=13%  Similarity=0.132  Sum_probs=69.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec----CCCHHHHhCCCCEEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG----QQQLEDALTGMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDiVIi  120 (305)
                      .++||+|+||+|++|++++..|+..|+  +|.+++++..+..  +...    ..++.+.+    ..++.++++++|+||.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~~~--~~~~----~~~~~~~gD~~d~~~l~~al~~~d~vi~   73 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLP--SEGP----RPAHVVVGDVLQAADVDKTVAGQDAVIV   73 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGSC--SSSC----CCSEEEESCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhhcc--cccc----cccccccccccchhhHHHHhcCCCEEEE
Confidence            356999999999999999999999998  9999998652110  0111    11222111    1356788999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv  161 (305)
                      ++|........     ..+.+..+.+++.+++.+-+-++.+
T Consensus        74 ~~g~~~~~~~~-----~~~~~~~~~l~~aa~~~~v~r~i~~  109 (205)
T d1hdoa_          74 LLGTRNDLSPT-----TVMSEGARNIVAAMKAHGVDKVVAC  109 (205)
T ss_dssp             CCCCTTCCSCC-----CHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             EeccCCchhhh-----hhhHHHHHHHHHHHHhcCCCeEEEE
Confidence            98864322211     2245677788888888875544443

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=1.4e-07  Score=76.29  Aligned_cols=102  Identities=18%  Similarity=0.227  Sum_probs=68.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      |||+|||+ |.+|+.++..|.+.|+  +|.++|+++..................... ..+ .+++.++|+||++.... 
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~D~iii~vka~-   74 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNESLT-AND-PDFLATSDLLLVTLKAW-   74 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEEEEE-ESC-HHHHHTCSEEEECSCGG-
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhhccccCCccccccccc-cch-hhhhcccceEEEeeccc-
Confidence            79999999 9999999999999999  999999977322211111111111111111 223 57889999999986321 


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCcc
Q 021932          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNST  169 (305)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~l  169 (305)
                                     -+.+.++.+..+- ++..|+...|=++..
T Consensus        75 ---------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~  103 (167)
T d1ks9a2          75 ---------------QVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (167)
T ss_dssp             ---------------GHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             ---------------chHHHHHhhccccCcccEEeeccCcccHH
Confidence                           1455666676664 788888888876654

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=98.50  E-value=1.6e-07  Score=83.48  Aligned_cols=114  Identities=19%  Similarity=0.207  Sum_probs=75.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC----CCHHHHhCCC--CEEEEc
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTGM--DIVIIP  121 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t----~d~~~al~~a--DiVIi~  121 (305)
                      ||.|+||+|++|++++..|+++|+  +|+.+|.....+....+.......+++.+.+.    .++.+++++.  |+||.+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~   79 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL   79 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEee
Confidence            899999999999999999999998  99999854322211111111112233333221    2345666654  999999


Q ss_pred             CCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          122 AGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       122 ag~~~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |+......  .+..+....|+...+.+++...+.+..-.++..|
T Consensus        80 aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          80 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            87542211  1335677889999999999999998766665554

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.49  E-value=1.8e-07  Score=77.86  Aligned_cols=97  Identities=23%  Similarity=0.261  Sum_probs=65.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc----cC---CceEEEEecCCCHHHHhCCCCEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DT---NAVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~----~~---~~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      |||+|||+ |..|+++|..|+..++  +|.++.+........++...    ..   ....... .++|.+++++++|+||
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~--~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~ad~Ii   76 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIF-WPEQLEKCLENAEVVL   76 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEE-CGGGHHHHHTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEEecccHHHHHHHhhhhhhhhhcchhcccccc-ccccHHHHHhccchhh
Confidence            79999999 9999999999999988  99999763211122222211    10   1122222 3568889999999999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ++..                ...++++++++.++-++..+++++
T Consensus        77 ~avp----------------s~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          77 LGVS----------------TDGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             ECSC----------------GGGHHHHHHHHTTTCCSCEEEECC
T ss_pred             cccc----------------hhhhHHHHHhhccccccceecccc
Confidence            9852                133567777788777665555554

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.5e-07  Score=79.38  Aligned_cols=113  Identities=19%  Similarity=0.106  Sum_probs=76.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE--EecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG--FLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~--~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .+||.|+||+|++|++++..|++++...+|.++++++..-.......    .....  +....++.++++++|+||.++|
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~----i~~~~~D~~~~~~~~~~~~~~d~vi~~~~   89 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKN----VNQEVVDFEKLDDYASAFQGHDVGFCCLG   89 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGG----CEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccce----eeeeeeccccccccccccccccccccccc
Confidence            35899999999999999999998887779999998762100000000    00110  1112356788999999999987


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ... ......++...|.....++++...+.+.+-++.+.|
T Consensus        90 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss  128 (232)
T d2bkaa1          90 TTR-GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSS  128 (232)
T ss_dssp             CCH-HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ccc-cccchhhhhhhcccccceeeecccccCccccccCCc
Confidence            542 122345567778999999999988877665555444

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.44  E-value=1.2e-06  Score=78.22  Aligned_cols=177  Identities=18%  Similarity=0.205  Sum_probs=105.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC----CcEEEEEeCCCCchhhhhhhcccCCceEEEEecC----CCHHHHhCCCCEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTGMDIV  118 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~----~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t----~d~~~al~~aDiV  118 (305)
                      |||.|+||+|++|++++..|+++|+    .++++.+|.....+....+........+..+...    ........+.|+|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            7999999999999999999998875    4688888875422222222222223344443221    1334567999999


Q ss_pred             EEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC------CccHHHHHHHHHHhCCCCCCcEEE
Q 021932          119 IIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV------NSTVPIAAEVFKKVGTYDPKRLLG  190 (305)
Q Consensus       119 Ii~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv------d~lt~~~~~~~~~~s~~p~~kviG  190 (305)
                      +.+|+.+...  .....+.+..|+.....+++.+.++...-+|...|.=+      ..+.        +...+.|....|
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~--------E~~~~~p~~~Y~  152 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWT--------ESSPLEPNSPYA  152 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBC--------TTSCCCCCSHHH
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCC--------CCCCCCCCCHHH
Confidence            9998754322  12345567889999999999999988665555444210      0010        111122222333


Q ss_pred             eeehhhHHHHHHHHHHhCCCCccee-EEEEcccCC-cceeecc
Q 021932          191 VTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG-VTILPLL  231 (305)
Q Consensus       191 ~t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~hg~-~t~vp~~  231 (305)
                      .+-+-..++-...++..+++...++ +.|.|.+.. +.++|.+
T Consensus       153 ~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~  195 (322)
T d1r6da_         153 ASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLF  195 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHH
Confidence            3323333444555677788888887 678885432 1344443

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.1e-06  Score=78.31  Aligned_cols=169  Identities=12%  Similarity=0.072  Sum_probs=96.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      +||.|+||+|++|++++..|+..|+  +|+.+|.... +....+.+......+..... ...+.++.++|+||.+|+...
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~-~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~d~VihlAa~~~   77 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFT-GRKRNVEHWIGHENFELINH-DVVEPLYIEVDQIYHLASPAS   77 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSS-CCGGGTGGGTTCTTEEEEEC-CTTSCCCCCCSEEEECCSCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCc-CCHHHHHHhcCCCceEEEeh-HHHHHHHcCCCEEEECcccCC
Confidence            4999999999999999999999998  9999996331 11111222221223333221 234456789999999987542


Q ss_pred             CC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC-----CCCc-cHHHHHHHHHHhCCCCCCcEEEeeehhhHH
Q 021932          127 KP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-----PVNS-TVPIAAEVFKKVGTYDPKRLLGVTMLDVVR  198 (305)
Q Consensus       127 ~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tN-----Pvd~-lt~~~~~~~~~~s~~p~~kviG~t~Lds~R  198 (305)
                      ..  ..+..+.+..|+....++++.+.+... -+|...|.     |... +..   .......-+.|...-|.+-+....
T Consensus        78 ~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~vy~~~~~~~~~e---~~~~~~~~~~p~~~Y~~sK~~~E~  153 (312)
T d2b69a1          78 PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSE---DYWGHVNPIGPRACYDEGKRVAET  153 (312)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCT---TCCCBCCSSSTTHHHHHHHHHHHH
T ss_pred             chhHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChheecCCCCCCCCc---cccCCCCCCCCccHHHHHHHHHHH
Confidence            11  134556788899999999999998865 23433331     1100 000   000000001122223333222333


Q ss_pred             HHHHHHHHhCCCCccee-EEEEcccC
Q 021932          199 ANTFVAEVLGLDPREVD-VPVVGGHA  223 (305)
Q Consensus       199 ~~~~la~~l~v~~~~V~-~~vlG~hg  223 (305)
                      +-...++..|++..-++ ..|.|.+.
T Consensus       154 ~~~~~~~~~~~~~~~lR~~~vyGp~~  179 (312)
T d2b69a1         154 MCYAYMKQEGVEVRVARIFNTFGPRM  179 (312)
T ss_dssp             HHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHhCCcEEEEEeeeEECCCC
Confidence            44445566788877776 66888553

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.39  E-value=2.2e-07  Score=78.14  Aligned_cols=71  Identities=17%  Similarity=0.245  Sum_probs=51.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcc--------cCCceEEEEecCCCHHHHhCCCCE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--------DTNAVVRGFLGQQQLEDALTGMDI  117 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~--------~~~~~v~~~~~t~d~~~al~~aDi  117 (305)
                      +.||+|+|| |..|+++|..|...++  +|.|+++++.....+.-.+.        ....++..   ++|++++++++|+
T Consensus         7 m~KI~ViGa-G~wGtAlA~~La~~g~--~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~---t~~l~~a~~~ad~   80 (189)
T d1n1ea2           7 LNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF---TSDVEKAYNGAEI   80 (189)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE---ESCHHHHHTTCSC
T ss_pred             eceEEEECC-CHHHHHHHHHHHHcCC--eEEEEEecHHHHHHHhhccccccccccccccccccc---chhhhhccCCCCE
Confidence            358999999 9999999999999988  99999987521111111111        11234554   4688999999999


Q ss_pred             EEEcC
Q 021932          118 VIIPA  122 (305)
Q Consensus       118 VIi~a  122 (305)
                      ||++.
T Consensus        81 iiiav   85 (189)
T d1n1ea2          81 ILFVI   85 (189)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            99985

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.36  E-value=1e-06  Score=79.74  Aligned_cols=113  Identities=17%  Similarity=0.036  Sum_probs=76.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe--cCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL--GQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi~a  122 (305)
                      +.|||.|+||+|++|++++..|+++|+  +|+.+|.........++.    ........  ...++.+++++.|.||.++
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMTEDMF----CDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSCGGGT----CSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhcc----cCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            568999999999999999999999998  999999755211111111    11121111  1123456678999999998


Q ss_pred             CCCCCC---CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          123 GVPRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       123 g~~~~~---g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +.....   ..........|......++....+.+.+-+|...|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS  131 (363)
T d2c5aa1          88 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS  131 (363)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             cccccccccccccccccccccchhhHHHHhHHhhCccccccccc
Confidence            654221   12344566779999999999999887655554444

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.27  E-value=3.2e-06  Score=68.66  Aligned_cols=95  Identities=15%  Similarity=0.182  Sum_probs=62.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      +||+|||+ |.+|+++|..|...++..+|+.+|.++ ....+.++.-..    . ..  +........++|+||++..  
T Consensus         2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~----~-~~--~~~~~~~~~~~dlIila~p--   71 (171)
T d2g5ca2           2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIID----E-GT--TSIAKVEDFSPDFVMLSSP--   71 (171)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCS----E-EE--SCGGGGGGTCCSEEEECSC--
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcch----h-hh--hhhhhhhccccccccccCC--
Confidence            47999998 999999999999999777999999876 222222222111    1 11  1112244578999999852  


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNP  165 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNP  165 (305)
                                    ...+.++.+++.++- ++.+++-+++-
T Consensus        72 --------------~~~~~~vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          72 --------------VRTFREIAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             --------------HHHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             --------------chhhhhhhhhhhccccccccccccccc
Confidence                          233556666676665 67777665543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=2e-06  Score=76.94  Aligned_cols=106  Identities=14%  Similarity=0.143  Sum_probs=71.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC----CC-HHHHhCCCCEEEEc
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQ-LEDALTGMDIVIIP  121 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t----~d-~~~al~~aDiVIi~  121 (305)
                      |||.|+||+|++|++++..|+.+|+. +|+.+|.... +. ..+..   .++++.+.+.    .+ .+.+++++|+||.+
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~-~V~~ld~~~~-~~-~~~~~---~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~   74 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSD-AI-SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLPL   74 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCG-GG-GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCc-ch-hhhcc---CCCeEEEECccCChHHHHHHHHhCCCccccc
Confidence            69999999999999999988888843 8999998541 11 11111   1233333221    12 23477899999999


Q ss_pred             CCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcE
Q 021932          122 AGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAI  158 (305)
Q Consensus       122 ag~~~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~ai  158 (305)
                      |+......  ......+..|+....++++.+.+....-+
T Consensus        75 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~  113 (342)
T d2blla1          75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII  113 (342)
T ss_dssp             BCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEE
T ss_pred             cccccccccccCCcccccccccccccccccccccccccc
Confidence            98643221  12245678899999999999998876443

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.25  E-value=2.1e-06  Score=69.65  Aligned_cols=64  Identities=19%  Similarity=0.242  Sum_probs=48.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |||+|||. |.||+.+|..|+..|+  +|..+|+++.  .+.++....    ...   ..+.+++++++|+||++.
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~--~V~~~d~~~~--~~~~~~~~~----~~~---~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPE--AIADVIAAG----AET---ASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHHTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCC--eEEEEeCCcc--hhHHHHHhh----hhh---cccHHHHHhCCCeEEEEc
Confidence            69999998 9999999999999999  9999998752  122223221    111   235678999999999986

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=4.9e-06  Score=75.40  Aligned_cols=114  Identities=17%  Similarity=0.054  Sum_probs=70.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcc--cCCceEEEEecC----CCHHHHhCCC--C
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM--DTNAVVRGFLGQ----QQLEDALTGM--D  116 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~--~~~~~v~~~~~t----~d~~~al~~a--D  116 (305)
                      +|.|+||+|++|++++..|++.|+  +|+.+|+...   ......+.+.  ....+++.+.+.    .++++.+++.  |
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            555999999999999999999998  9999998531   0111111111  112345543221    2344555654  9


Q ss_pred             EEEEcCCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCC--CcEEEEec
Q 021932          117 IVIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCP--KAIVNLIS  163 (305)
Q Consensus       117 iVIi~ag~~~~--~g~~r~d~~~~N~~i~~~i~~~I~~~~p--~aiviv~t  163 (305)
                      +|+.+|+....  ...+....+..|+.....+++.+++++-  ...+|.+|
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~S  131 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS  131 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence            99999986432  2244556778899999999999998873  23454443

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.19  E-value=2.1e-06  Score=78.47  Aligned_cols=115  Identities=13%  Similarity=0.114  Sum_probs=75.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---------------Cchhh---hhhhcccCCceEEEEecC-CC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------------TPGVT---ADISHMDTNAVVRGFLGQ-QQ  107 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---------------~~g~~---~DL~~~~~~~~v~~~~~t-~d  107 (305)
                      |||.|+||+|++|++++..|++.|+  +|+.+|...               ....-   ..+... ...++..+.+. .|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~Dl~d   78 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL-TGKSIELYVGDICD   78 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH-HCCCCEEEESCTTS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhh-cCCCcEEEEccCCC
Confidence            6999999999999999999999998  999999421               00000   000000 11233433221 12


Q ss_pred             ---HHHHhCC--CCEEEEcCCCCCCC----C-CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          108 ---LEDALTG--MDIVIIPAGVPRKP----G-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       108 ---~~~al~~--aDiVIi~ag~~~~~----g-~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                         +++++++  .|+|+.+|+...-+    + ....+....|+.....+++.+.+++.+..++..|.
T Consensus        79 ~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss  145 (393)
T d1i24a_          79 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT  145 (393)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             HHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccc
Confidence               3445554  49999999753211    1 11235678899999999999999998887776663

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.16  E-value=4.8e-06  Score=74.80  Aligned_cols=112  Identities=17%  Similarity=0.122  Sum_probs=73.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC----CCHHHHhCCCCEEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ----QQLEDALTGMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t----~d~~~al~~aDiVIi  120 (305)
                      .+|||.|+||+|+||++++..|+..|+--.++.+|.....+....+... ....+..+.+.    ..+.+++++.|.|++
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~-~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~   79 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI-LGDRVELVVGDIADAELVDKLAAKADAIVH   79 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG-CSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHh-hcCCeEEEEccCCCHHHHHHHHhhhhhhhh
Confidence            3689999999999999999999988874466777753211111111111 12233333221    245677899999999


Q ss_pred             cCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCc
Q 021932          121 PAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKA  157 (305)
Q Consensus       121 ~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~a  157 (305)
                      .|+......  .+..+.+..|+.....+++...+.+..-
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~  118 (346)
T d1oc2a_          80 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRF  118 (346)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEE
T ss_pred             hhhcccccchhhCcccceeeehHhHHhhhhhhccccccc
Confidence            887543221  2235677889999999999999888643

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=4.4e-06  Score=75.07  Aligned_cols=113  Identities=19%  Similarity=0.082  Sum_probs=73.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecC-CC---HHHHhC--CCCEEE
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQ-QQ---LEDALT--GMDIVI  119 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t-~d---~~~al~--~aDiVI  119 (305)
                      .|.|+||+|++|++++..|+..|+  +|+.+|....  ........... ...++.+.+. .|   ++++++  +.|+||
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   79 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEYKIDSVI   79 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhHHHhHHhhc-ccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence            588999999999999999999998  9999996431  11111111110 1122222111 22   333344  789999


Q ss_pred             EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          120 IPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       120 i~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .+|+.....  .+....+...|......+.+...+...+.++...|
T Consensus        80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS  125 (347)
T d1z45a2          80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  125 (347)
T ss_dssp             ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence            999865211  12345667789999999999999998777666655

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.13  E-value=5.1e-06  Score=75.53  Aligned_cols=107  Identities=16%  Similarity=0.083  Sum_probs=68.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-CC---HHHHhC--CCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ---LEDALT--GMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-~d---~~~al~--~aDiVIi  120 (305)
                      |||.|+||+|++|++++..|+..++- .++++|.....+....+.+......+..+.+. +|   +++.++  +.|+||.
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~-vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC-EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            69999999999999999999988872 47778864422222223333223345543221 23   233333  5899999


Q ss_pred             cCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhC
Q 021932          121 PAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCC  154 (305)
Q Consensus       121 ~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~  154 (305)
                      +|+....+.  .+..+.+..|+.....+.+.+.++.
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~  115 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYW  115 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            987542110  1234567889999999998888764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.12  E-value=3.1e-06  Score=70.56  Aligned_cols=104  Identities=17%  Similarity=0.249  Sum_probs=64.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC------chh-------hhhhhcccCCceEEEEecCCCHHHHhC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGV-------TADISHMDTNAVVRGFLGQQQLEDALT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~------~g~-------~~DL~~~~~~~~v~~~~~t~d~~~al~  113 (305)
                      |||+|||. |+||..+|..++ .|+  +|+.+|+++.      .|.       ..++... .......   +++...+..
T Consensus         1 MkI~ViGl-G~vGl~~a~~~a-~g~--~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~-~~~~~~~---~~~~~~~~~   72 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLLS-LQN--EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS-KQLSIKA---TLDSKAAYK   72 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHHT-TTS--EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-SCCCEEE---ESCHHHHHH
T ss_pred             CEEEEECC-ChhHHHHHHHHH-CCC--cEEEEECCHHHHHHHhhcccccchhhHHHHhhh-hhhhhhc---cchhhhhhh
Confidence            79999998 999999997664 688  9999999861      111       0111111 1122222   234567889


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          114 GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ++|+++++.+.|.....+..     ....+....+.+....+..++++-|
T Consensus        73 ~~~ii~v~vpt~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~iii~S  117 (196)
T d1dlja2          73 EAELVIIATPTNYNSRINYF-----DTQHVETVIKEVLSVNSHATLIIKS  117 (196)
T ss_dssp             HCSEEEECCCCCEETTTTEE-----CCHHHHHHHHHHHHHCSSCEEEECS
T ss_pred             ccccccccCCccccccCCCc-----ceeEEeehhhhhhhcccceeEEeee
Confidence            99999999877643221111     2244566666666667666655543

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=1.3e-05  Score=64.27  Aligned_cols=93  Identities=13%  Similarity=0.135  Sum_probs=61.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~--~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      |+||+|+||+|.||+-+...|+.++  ...+++++......+.........  ..+..   ..+. ++++++|++|++++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~--~~~~~---~~~~-~~~~~~DivF~a~~   74 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTLQD---AFDL-EALKALDIIVTCQG   74 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCC--CBCEE---TTCH-HHHHTCSEEEECSC
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCc--eeeec---ccch-hhhhcCcEEEEecC
Confidence            3599999999999999997766654  246888887655333322222211  11111   2243 67899999999973


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN  160 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aivi  160 (305)
                                      .++-+++++.+.+.+.+++||
T Consensus        75 ----------------~~~s~~~~~~~~~~g~~~~VI   95 (146)
T d1t4ba1          75 ----------------GDYTNEIYPKLRESGWQGYWI   95 (146)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCCEEE
T ss_pred             ----------------chHHHHhhHHHHhcCCCeecc
Confidence                            355777888888777666653

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=98.10  E-value=2.3e-05  Score=70.27  Aligned_cols=113  Identities=13%  Similarity=-0.008  Sum_probs=73.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhccc-CCceEEEEe----cCCCHHHHhCCCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMD-TNAVVRGFL----GQQQLEDALTGMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~-~~~~v~~~~----~t~d~~~al~~aDiVIi  120 (305)
                      +||.|+||+|++|++++..|++.|+  +|+...++.. ......+.+.. .......+.    ....+.++++++|.|+.
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            4999999999999999999999998  8887766541 11111111111 111112111    11245578999999999


Q ss_pred             cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEe
Q 021932          121 PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLI  162 (305)
Q Consensus       121 ~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~  162 (305)
                      +++... ...+.......|+....++++.+.++. ..-+++..
T Consensus        90 ~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~S  131 (342)
T d1y1pa1          90 IASVVS-FSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS  131 (342)
T ss_dssp             CCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred             hccccc-ccccccccccchhhhHHHHHHhhhcccccccccccc
Confidence            887542 334455667779999999999999874 44444433

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.10  E-value=8.8e-06  Score=72.77  Aligned_cols=169  Identities=14%  Similarity=0.039  Sum_probs=101.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-ch----hhhhhhcccCCceEEEEecC-C---CHHHHhCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG----VTADISHMDTNAVVRGFLGQ-Q---QLEDALTGMD  116 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g----~~~DL~~~~~~~~v~~~~~t-~---d~~~al~~aD  116 (305)
                      ++||.|+||+|++|++++..|.+.|+  +|..+|.... ..    ....+........++.+.+. .   .......+.|
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~   93 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD   93 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccccccc
Confidence            45899999999999999999999999  9999997431 11    11111111111233332211 1   2334568889


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC-----C-ccHHHHHHHHHHhCCCCCCcE
Q 021932          117 IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV-----N-STVPIAAEVFKKVGTYDPKRL  188 (305)
Q Consensus       117 iVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv-----d-~lt~~~~~~~~~~s~~p~~kv  188 (305)
                      .|+.++....-+  ..+..+.+..|+.....+++.+.+.+.+.+|...|.-+     + ...        +..-..|...
T Consensus        94 ~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~--------E~~~~~p~~~  165 (341)
T d1sb8a_          94 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKV--------EDTIGKPLSP  165 (341)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBC--------TTCCCCCCSH
T ss_pred             ccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCcc--------CCCCCCCCCc
Confidence            999887543211  12345677889999999999999988766666655321     0 010        0011122233


Q ss_pred             EEeeehhhHHHHHHHHHHhCCCCccee-EEEEcccCC
Q 021932          189 LGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (305)
Q Consensus       189 iG~t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~hg~  224 (305)
                      -|.+-+...++....++..+++..-++ ..|.|.+++
T Consensus       166 Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~  202 (341)
T d1sb8a_         166 YAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQD  202 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCC
T ss_pred             chHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcC
Confidence            333434445555666777788887777 558887643

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.09  E-value=1.3e-05  Score=70.74  Aligned_cols=115  Identities=16%  Similarity=0.018  Sum_probs=74.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-CCH---HHHh--CCCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQL---EDAL--TGMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-~d~---~~al--~~aDiVIi  120 (305)
                      +||.|+||+|++|++++..|+..|+  +|+.+|+.........+.+.....+++.+... .|.   .+.+  ...++++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~   78 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN   78 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccc
Confidence            3899999999999999999999998  99999986521111222222222344443221 222   1112  24667777


Q ss_pred             cCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          121 PAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       121 ~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +++.....  .....+.+..|+....++++.+.++.+..+++..|
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~S  123 (321)
T d1rpna_          79 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAS  123 (321)
T ss_dssp             CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             ccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCccccccc
Confidence            76543211  12345667889999999999999999776666554

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.05  E-value=4e-06  Score=70.14  Aligned_cols=106  Identities=11%  Similarity=0.094  Sum_probs=68.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-CC-HHHHhCCCCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ-LEDALTGMDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-~d-~~~al~~aDiVIi~ag~  124 (305)
                      +||.|+||+|++|++++..|+..+...+|+...+++...          ...+...... .+ ......+.|.||.++|.
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~----------~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~   72 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE----------HPRLDNPVGPLAELLPQLDGSIDTAFCCLGT   72 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC----------CTTEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh----------cccccccccchhhhhhccccchheeeeeeee
Confidence            499999999999999999999999765777665543210          0111110000 01 11223567999999876


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~  162 (305)
                      .........++...|......+++..++...+-++.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~S  110 (212)
T d2a35a1          73 TIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVS  110 (212)
T ss_dssp             CHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eccccccccccccchhhhhhhccccccccccccccccc
Confidence            53333344567788889999999998887666555443

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.02  E-value=1.2e-05  Score=65.21  Aligned_cols=65  Identities=23%  Similarity=0.404  Sum_probs=49.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ++||++||. |.+|+.+|..|++.|+  +|..||+++.  ...++....   ...    ..+..++++++|+|+++.
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~--~v~~~d~~~~--~~~~~~~~~---~~~----~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQS--AVDGLVAAG---ASA----ARSARDAVQGADVVISML   65 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHHTT---CEE----CSSHHHHHTSCSEEEECC
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCC--eEEEEECchh--hhhhhhhhh---ccc----cchhhhhccccCeeeecc
Confidence            469999998 9999999999999999  9999998652  222333322   111    235679999999999986

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.98  E-value=3.2e-05  Score=62.03  Aligned_cols=111  Identities=13%  Similarity=0.167  Sum_probs=72.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~-~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      |||+|+||+|+||+-+...|+.+. + ..++.++......|+..++...  ...+.  . ..+ .+.++++|+||++.+ 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~--~~~~~--~-~~~-~~~~~~~DvvF~alp-   73 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKD--AGMLH--D-AFD-IESLKQLDAVITCQG-   73 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSC--CCBCE--E-TTC-HHHHTTCSEEEECSC-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCc--ceeee--c-ccc-hhhhccccEEEEecC-
Confidence            699999999999999998776543 2 4588887765544443322211  11111  1 234 367899999999863 


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeeh
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML  194 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~L  194 (305)
                                     -...+++++.+.+.+.+.+|  +.|-.|.             .++++-++++..+
T Consensus        74 ---------------~~~s~~~~~~l~~~g~~~~V--IDlSsdf-------------R~~~dvpl~lPEi  113 (147)
T d1mb4a1          74 ---------------GSYTEKVYPALRQAGWKGYW--IDAASTL-------------RMDKEAIITLDPV  113 (147)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCSEE--EESSSTT-------------TTCTTEEEECHHH
T ss_pred             ---------------chHHHHHhHHHHHcCCceEE--EeCCccc-------------cccCCceEEeCCc
Confidence                           24567888888888877766  4555543             3556666666443

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=6.4e-06  Score=72.60  Aligned_cols=154  Identities=13%  Similarity=0.078  Sum_probs=89.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHH--hCCCCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA--LTGMDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~a--l~~aDiVIi~ag~  124 (305)
                      +||.|+||+|++|++++..|++.|+  +++++|....    .|+.+..            ...+.  ..+.|+|+++++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~----~~~~~~~------------~~~~~~~~~~~d~v~~~a~~   64 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDSR------------AVHDFFASERIDQVYLAAAK   64 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCHH------------HHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchh----ccccCHH------------HHHHHHhhcCCCEEEEcchh
Confidence            4999999999999999999999988  6677765321    2222211            11111  2457889998754


Q ss_pred             CCCC---CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC---------CCccHHHHHHHHHHhCCCCCCcEEEee
Q 021932          125 PRKP---GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP---------VNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (305)
Q Consensus       125 ~~~~---g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNP---------vd~lt~~~~~~~~~~s~~p~~kviG~t  192 (305)
                      ....   .....+.+..|+....++++.+.+++-+-+|.+.|.=         .+--..      ....-.+++..-|.+
T Consensus        65 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~------~~~~~~~~~~~Y~~s  138 (315)
T d1e6ua_          65 VGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESEL------LQGTLEPTNEPYAIA  138 (315)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGT------TSSCCCGGGHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCcc------ccCCCCCCCCHHHHH
Confidence            3211   1234566788999999999999998766555554411         110000      000000111112223


Q ss_pred             ehhhHHHHHHHHHHhCCCCccee-EEEEcccCC
Q 021932          193 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (305)
Q Consensus       193 ~Lds~R~~~~la~~l~v~~~~V~-~~vlG~hg~  224 (305)
                      -+..-++....++..|++..-++ ..|.|.++.
T Consensus       139 K~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~  171 (315)
T d1e6ua_         139 KIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDN  171 (315)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEEECEEESTTCC
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeeccEECCCCC
Confidence            23333444445566688777777 778897654

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.96  E-value=2.3e-05  Score=64.83  Aligned_cols=163  Identities=17%  Similarity=0.023  Sum_probs=88.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .+++|.|+||+|++|++++..|+..|+.-.++.+++++.  ...++....  ..+.. .....++.++++++|.||.+++
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~--~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ--GKEKIGGEA--DVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHH--HHHHTTCCT--TEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHH--HHHhccCCc--EEEEeeeccccccccccccceeeEEEEe
Confidence            356999999999999999999999987334554544331  111111110  11111 0111245678999999999987


Q ss_pred             CCCCC---------------CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcE
Q 021932          124 VPRKP---------------GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRL  188 (305)
Q Consensus       124 ~~~~~---------------g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kv  188 (305)
                      .....               ..........|....+.++...............+...+..            ..|. ..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~------------~~~~-~~  144 (252)
T d2q46a1          78 AVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNP------------DHPL-NK  144 (252)
T ss_dssp             CCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCT------------TCGG-GG
T ss_pred             eccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCC------------Cccc-cc
Confidence            43210               01123344567777888888877776554443332111110            0110 00


Q ss_pred             EEe-eehhhHHHHHHHHHHhCCCCccee-EEEEcccCC
Q 021932          189 LGV-TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAG  224 (305)
Q Consensus       189 iG~-t~Lds~R~~~~la~~l~v~~~~V~-~~vlG~hg~  224 (305)
                      ... .......+...+.+..+++..-++ ..++|.++.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~~  182 (252)
T d2q46a1         145 LGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGG  182 (252)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSSSCEEEEEECEEECSCTT
T ss_pred             ccccchhhhhhhhhhhhhcccccceeecceEEECCCcc
Confidence            011 122233445556666777766666 578887654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=97.94  E-value=1e-05  Score=72.22  Aligned_cols=113  Identities=17%  Similarity=0.127  Sum_probs=72.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhhhhcccCCceEEEEecC-CC---HHHHhC--CCCEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQ-QQ---LEDALT--GMDIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~t-~d---~~~al~--~aDiVI  119 (305)
                      +||.|+||+|++|++++..|+..|+  +|..+|++... ....+....  ...++.+.+. +|   +.++++  ..|+|+
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~--~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~   84 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARV--ADGMQSEIGDIRDQNKLLESIREFQPEIVF   84 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTT--TTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHHHhhhhc--ccCCeEEEeeccChHhhhhhhhhchhhhhh
Confidence            5999999999999999999999998  99999987621 111111111  1122222111 22   234444  458888


Q ss_pred             EcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          120 IPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       120 i~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .+++.+....  ..-.+....|+.....+++.+.+......++..|
T Consensus        85 ~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s  130 (356)
T d1rkxa_          85 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  130 (356)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             hhhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence            8887542110  1224456779999999999999988666655544

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.7e-05  Score=70.96  Aligned_cols=112  Identities=20%  Similarity=0.099  Sum_probs=70.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----C---chhhhhhhcccCCceEEEEecC-CC---HHHHhCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T---PGVTADISHMDTNAVVRGFLGQ-QQ---LEDALTG  114 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-----~---~g~~~DL~~~~~~~~v~~~~~t-~d---~~~al~~  114 (305)
                      .||.|+||+|++|++++..|+..|+  +|+.+|...     .   ......+.... ..+++.+.+. +|   +++++.+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~   79 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHHHHHhc-CCCcEEEEeeccccccccccccc
Confidence            5999999999999999999999998  999998632     0   00111111111 2334433221 23   3344544


Q ss_pred             CC--EEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEE
Q 021932          115 MD--IVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL  161 (305)
Q Consensus       115 aD--iVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv  161 (305)
                      .|  +|+.+|+.+...  .....+.+..|+.....+.+.+.+++.+-++..
T Consensus        80 ~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~  130 (346)
T d1ek6a_          80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFS  130 (346)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCccccccc
Confidence            44  666777754211  012456678899999999999999886655543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.86  E-value=9.5e-06  Score=65.19  Aligned_cols=65  Identities=17%  Similarity=0.269  Sum_probs=47.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |||+|||+ |.+|++++..|...++  ++.++|++..  ...++.... .  +.   ...+.+++++++|+||++.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~--~i~v~~r~~~--~~~~l~~~~-g--~~---~~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLE--RSKEIAEQL-A--LP---YAMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHH--HHHHHHHHH-T--CC---BCSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCC--eEEEEcChHH--hHHhhcccc-c--ee---eechhhhhhhccceeeeec
Confidence            79999998 9999999999988887  9999998642  122222111 0  11   1246778899999999986

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.86  E-value=4.3e-05  Score=69.31  Aligned_cols=114  Identities=15%  Similarity=0.124  Sum_probs=71.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--------C--ch-hhhhhhccc------CCceEEEEecC-CC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--------T--PG-VTADISHMD------TNAVVRGFLGQ-QQ  107 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~--------~--~g-~~~DL~~~~------~~~~v~~~~~t-~d  107 (305)
                      |||.|+||+||+|++++..|++ .++  +|+++|.-.        .  .. ....+.+..      ....+..+.+. .|
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d   80 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence            6999999999999999987765 677  999999521        1  11 111122111      11223332221 22


Q ss_pred             ---HHHHh---CCCCEEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Q 021932          108 ---LEDAL---TGMDIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (305)
Q Consensus       108 ---~~~al---~~aDiVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~  162 (305)
                         +++++   +++|+|+.+|+......  .........|......+++...+.++..++...
T Consensus        81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~  143 (383)
T d1gy8a_          81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSS  143 (383)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             HHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccc
Confidence               23333   57899999997542111  123445678999999999999999877665443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.78  E-value=3.4e-05  Score=62.97  Aligned_cols=74  Identities=14%  Similarity=0.213  Sum_probs=47.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch--hhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g--~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      .|||+|||. |.+|+.+|..|+..|+  +|..||+++.+.  ...+-......+.........++...+..++.++++.
T Consensus         1 ~MkIGvIGl-G~MG~~ma~~L~~~G~--~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           1 SMDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILV   76 (178)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred             CCEEEEEee-hHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEee
Confidence            379999998 9999999999999999  999999976221  1111111111223332211123345567777777764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.77  E-value=4.5e-05  Score=62.34  Aligned_cols=96  Identities=16%  Similarity=0.169  Sum_probs=61.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc-CCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~-~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      +|+|||. |.||+.+|..|+..|+  +|+.||+++.+  ..++.... ............+..+.+.++|+++++..   
T Consensus         4 nIg~IGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~---   75 (176)
T d2pgda2           4 DIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK---   75 (176)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC---
T ss_pred             cEEEEeE-hHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHhccccccccchhhhhhhhhhhcccceEEEecC---
Confidence            7999999 9999999999999999  99999997622  22222211 11112221112355678899999999852   


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          127 KPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                                  +.+.+.++...+.... |..++|..|
T Consensus        76 ------------~~~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          76 ------------AGQAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             ------------TTHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             ------------chHHHHHHHHHHHhccccCcEEEecC
Confidence                        1234555556666665 555665554

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.74  E-value=2.2e-05  Score=67.42  Aligned_cols=90  Identities=21%  Similarity=0.204  Sum_probs=60.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC--CCCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~  124 (305)
                      |||.|+||+|++|+.++..|..+|+  +|+.+|+++     .|+.+..            +.++.++  +.|+||.+++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~-----~D~~d~~------------~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITNVL------------AVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTCHH------------HHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechh-----ccCCCHH------------HHHHHHHHcCCCEEEeeccc
Confidence            7999999999999999999999998  999999864     2333221            1234443  67999998875


Q ss_pred             CCCCC--CchhhHHHhhHHHHHHHHHHHHHhCC
Q 021932          125 PRKPG--MTRDDLFNINAGIVKTLCEGIAKCCP  155 (305)
Q Consensus       125 ~~~~g--~~r~d~~~~N~~i~~~i~~~I~~~~p  155 (305)
                      .....  .........|......+.........
T Consensus        63 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~   95 (281)
T d1vl0a_          63 TAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA   95 (281)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC
T ss_pred             cccccccccchhhcccccccccccccccccccc
Confidence            42111  12234455666677777666665543

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=97.73  E-value=1.6e-05  Score=68.55  Aligned_cols=93  Identities=15%  Similarity=0.187  Sum_probs=61.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC--CCCEEEEcCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVIIPAGV  124 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi~ag~  124 (305)
                      |||.|+||+|+||++++..|...+   +++.+|.... ....|+.+.            ..+++.++  +.|+||.+||.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~~-~~~~Dl~~~------------~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHSK-EFCGDFSNP------------KGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTCS-SSCCCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCCc-cccCcCCCH------------HHHHHHHHHcCCCEEEEeccc
Confidence            799999999999999999887776   4566666541 111233221            12334454  45999999985


Q ss_pred             CCC--CCCchhhHHHhhHHHHHHHHHHHHHhCC
Q 021932          125 PRK--PGMTRDDLFNINAGIVKTLCEGIAKCCP  155 (305)
Q Consensus       125 ~~~--~g~~r~d~~~~N~~i~~~i~~~I~~~~p  155 (305)
                      ...  ...........|......+.+...+.+.
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~   97 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA   97 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             ccccccccCccccccccccccccchhhhhcccc
Confidence            421  1233445667788888899888887654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.67  E-value=9.3e-05  Score=58.69  Aligned_cols=82  Identities=16%  Similarity=0.250  Sum_probs=57.1

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      +..+++||+|||+.|.+|..+|..|.+.|+  +|.++|++...                      ..++.+.++|+++.+
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~~~----------------------~~~~~~~~~~~v~~~   60 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVS   60 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEEC
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCC--CcEeccccccc----------------------ccchhhhhccccccc
Confidence            344556999999449999999999999999  99999986410                      123567899999987


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                      ...                ..+.++...+.... ++++++-++
T Consensus        61 ~~~----------------~~~~~v~~~~~~~~~~~~iiiD~~   87 (152)
T d2pv7a2          61 VPI----------------NLTLETIERLKPYLTENMLLADLT   87 (152)
T ss_dssp             SCG----------------GGHHHHHHHHGGGCCTTSEEEECC
T ss_pred             cch----------------hhheeeeecccccccCCceEEEec
Confidence            532                12334445555554 566666554

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.66  E-value=2.8e-05  Score=62.01  Aligned_cols=64  Identities=17%  Similarity=0.204  Sum_probs=46.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |||+|||. |.+|+.++..|.+.|+  ++..+|....... .......   .+..     +..++++++|+||++.
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~-~~~~~~~---~~~~-----~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPST-IERARTV---GVTE-----TSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHH-HHHHHHH---TCEE-----CCHHHHHTSSEEEECS
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCC--eEEEEcCchhHHH-HHhhhcc---cccc-----cHHHHHhhcCeEEEEe
Confidence            69999998 9999999999999999  8999987652211 1111111   1111     2468899999999985

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.59  E-value=7.2e-05  Score=61.88  Aligned_cols=82  Identities=17%  Similarity=0.185  Sum_probs=56.3

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEE-EecCCCHHHHhCCCCEE
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRG-FLGQQQLEDALTGMDIV  118 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~-~~~t~d~~~al~~aDiV  118 (305)
                      .+.+.++|.|+||+|.+|..++..|++.|.  +|+++|++..  ...+.++........... .....+.++++.++|++
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDil   96 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFV   96 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCee
Confidence            455667999999999999999999999998  9999999862  222222222111111111 12224567788999999


Q ss_pred             EEcCCCC
Q 021932          119 IIPAGVP  125 (305)
Q Consensus       119 Ii~ag~~  125 (305)
                      |.++|.+
T Consensus        97 in~Ag~g  103 (191)
T d1luaa1          97 FTAGAIG  103 (191)
T ss_dssp             EECCCTT
T ss_pred             eecCccc
Confidence            9999864

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=97.59  E-value=0.0001  Score=63.62  Aligned_cols=77  Identities=17%  Similarity=0.072  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--ch-hhhhhhcccCCceEEEEec----CCCHHHHhCCCCE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG-VTADISHMDTNAVVRGFLG----QQQLEDALTGMDI  117 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g-~~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDi  117 (305)
                      +++||.|+||+|++|++++..|+..|+  +|+.++++..  .. ....+.... ...+..+.+    .....+++++++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~v~~v~~d~~d~~~~~~~~~~~~~   78 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALKQVDV   78 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhc-cCCcEEEEeecccchhhhhhccCcch
Confidence            356999999999999999999999998  8999887652  11 111111111 112222211    1235578899999


Q ss_pred             EEEcCCC
Q 021932          118 VIIPAGV  124 (305)
Q Consensus       118 VIi~ag~  124 (305)
                      ++.+++.
T Consensus        79 ~~~~~~~   85 (312)
T d1qyda_          79 VISALAG   85 (312)
T ss_dssp             EEECCCC
T ss_pred             hhhhhhh
Confidence            9998764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.58  E-value=0.00023  Score=55.04  Aligned_cols=99  Identities=20%  Similarity=0.137  Sum_probs=60.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCC---HHHH-hCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDA-LTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~~a-l~~aDiVIi~a  122 (305)
                      |||.|+|+ |.+|..++..|...|+  +++++|.++..  +.++.... ...+- +...+|   ++++ ++++|.++.+.
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~--~v~vid~d~~~--~~~~~~~~-~~~vi-~Gd~~~~~~l~~~~i~~a~~vv~~t   73 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEI-DALVI-NGDCTKIKTLEDAGIEDADMYIAVT   73 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHC-SSEEE-ESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--CcceecCChhh--hhhhhhhh-hhhhc-cCcccchhhhhhcChhhhhhhcccC
Confidence            79999999 9999999999999998  99999998621  11122111 11111 111122   2222 57899988874


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                      +..           +.|+.    ++...++++++-++..+.||..
T Consensus        74 ~~d-----------~~N~~----~~~~~k~~~~~~iI~~~~~~~~  103 (132)
T d1lssa_          74 GKE-----------EVNLM----SSLLAKSYGINKTIARISEIEY  103 (132)
T ss_dssp             SCH-----------HHHHH----HHHHHHHTTCCCEEEECSSTTH
T ss_pred             CcH-----------HHHHH----HHHHHHHcCCceEEEEecCHHH
Confidence            211           23542    2223455777777766677653

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=97.56  E-value=8.2e-05  Score=63.64  Aligned_cols=76  Identities=20%  Similarity=0.193  Sum_probs=49.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc---hh-hhhhhcccCCceEEEEec----CCCHHHHhCCCCE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GV-TADISHMDTNAVVRGFLG----QQQLEDALTGMDI  117 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~---g~-~~DL~~~~~~~~v~~~~~----t~d~~~al~~aDi  117 (305)
                      ++||.|+||+|++|++++..|+..|+  +|+.++++...   .. ...+.+.. ...+..+.+    .....++++++|.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFK-ASGANIVHGSIDDHASLVEAVKNVDV   79 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHH-TTTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhc-cCCcEEEEeecccchhhhhhhhhcee
Confidence            34999999999999999999999998  99999987621   11 11111111 111222211    1234577899999


Q ss_pred             EEEcCCC
Q 021932          118 VIIPAGV  124 (305)
Q Consensus       118 VIi~ag~  124 (305)
                      |+.+++.
T Consensus        80 vi~~~~~   86 (307)
T d1qyca_          80 VISTVGS   86 (307)
T ss_dssp             EEECCCG
T ss_pred             eeecccc
Confidence            9988753

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00016  Score=64.12  Aligned_cols=115  Identities=11%  Similarity=0.044  Sum_probs=69.9

Q ss_pred             CEE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhccc---CCceEEEEecC-CC---HHHHh--C
Q 021932           47 FKV-AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMD---TNAVVRGFLGQ-QQ---LEDAL--T  113 (305)
Q Consensus        47 ~KI-~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~~---~~~~v~~~~~t-~d---~~~al--~  113 (305)
                      +|| .|+||+|++|++++..|+..|+  +|+.+|+...   .+...++....   ...+++.+.+. +|   +.+++  .
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV   78 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc
Confidence            389 6999999999999999999999  9999998641   11111121111   12234443221 22   22333  3


Q ss_pred             CCCEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCC-C-cEEEEec
Q 021932          114 GMDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCP-K-AIVNLIS  163 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~--g~~r~d~~~~N~~i~~~i~~~I~~~~p-~-aiviv~t  163 (305)
                      +.|+|+.+++.....  .....+.++.|+.....+.+.+.+.+- + ..++.+|
T Consensus        79 ~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~S  132 (347)
T d1t2aa_          79 KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS  132 (347)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             ccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEec
Confidence            556778776643211  123455667899999999999998873 3 3455444

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.53  E-value=2.6e-05  Score=62.28  Aligned_cols=65  Identities=15%  Similarity=0.119  Sum_probs=44.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |||++||+ |.+|++++..|+..+. .+|.++|+++.+  ..++....   .++..   ++. ++++++|+||++.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~-~~i~v~~r~~~~--~~~l~~~~---~~~~~---~~~-~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGAEK--RERLEKEL---GVETS---ATL-PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSHHH--HHHHHHHT---CCEEE---SSC-CCCCTTSEEEECS
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC-CcEEEEeCChhH--HHHhhhhc---ccccc---ccc-ccccccceEEEec
Confidence            69999999 9999999997776662 299999987521  12222211   12222   233 5689999999985

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=97.51  E-value=0.00066  Score=60.28  Aligned_cols=104  Identities=15%  Similarity=0.136  Sum_probs=65.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC-CC----HHHHhCCCCEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ-QQ----LEDALTGMDIVI  119 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t-~d----~~~al~~aDiVI  119 (305)
                      ++++|+|+||+|++|++++..|+..|+  +|+.+-++.......++...   ..+..+.+. .|    +..+++++|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~---~~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhhhhhccc---CCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            345899999999999999999999998  88888765532222222221   222222221 12    446789999988


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .......          ..+....+.+++...+.+-.-+++..|
T Consensus        77 ~~~~~~~----------~~~~~~~~~~~~aa~~agv~~~v~~Ss  110 (350)
T d1xgka_          77 INTTSQA----------GDEIAIGKDLADAAKRAGTIQHYIYSS  110 (350)
T ss_dssp             ECCCSTT----------SCHHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred             eeccccc----------chhhhhhhHHHHHHHHhCCCceEEEee
Confidence            8643211          124555667777887777555555554

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.42  E-value=0.00018  Score=63.44  Aligned_cols=105  Identities=13%  Similarity=-0.019  Sum_probs=62.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---chhhhhhhcc---cCCceEEEEecC-CCH---HHHh--CC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM---DTNAVVRGFLGQ-QQL---EDAL--TG  114 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~---~g~~~DL~~~---~~~~~v~~~~~t-~d~---~~al--~~  114 (305)
                      +|+.|+||+|++|++++..|++.|+  +|+.+|+...   ......+...   .....++.+.+. .+.   ++.+  .+
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~   79 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK   79 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhc
Confidence            4899999999999999999999999  9999997531   1111111110   012233332221 232   2233  46


Q ss_pred             CCEEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHh
Q 021932          115 MDIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKC  153 (305)
Q Consensus       115 aDiVIi~ag~~~~~g--~~r~d~~~~N~~i~~~i~~~I~~~  153 (305)
                      .|+||.+|+......  ....+....|......+...+.+.
T Consensus        80 ~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~  120 (339)
T d1n7ha_          80 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH  120 (339)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             cchhhhccccccccccccCccccccccccccchhhhhhhhc
Confidence            799999997642211  123455667777777777776654

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.37  E-value=9e-05  Score=58.95  Aligned_cols=72  Identities=21%  Similarity=0.335  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++|||+|+||+|+||.-+...|.++++ ..||.++-.....|+.....    ...+....  .+ .+.+.++|++|++++
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~----~~~~~~~~--~~-~~~~~~~d~vf~a~p   73 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFA----ESSLRVGD--VD-SFDFSSVGLAFFAAA   73 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEET----TEEEECEE--GG-GCCGGGCSEEEECSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeec----cccchhcc--ch-hhhhccceEEEecCC
Confidence            368999999999999999999976543 35888887654444432211    22333221  12 255789999999864

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.35  E-value=0.00013  Score=60.09  Aligned_cols=73  Identities=16%  Similarity=0.240  Sum_probs=46.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhccc--CCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--TNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~--~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      |+||+|+||+|++|.-+..+|..++.+ ||..+=-+...|+..+-.+..  ....+.    ..+.++..+++|+|+.+.+
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~~aG~~i~~~~p~~~~~~~~~----~~~~~~~~~~~dvvf~a~p   75 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILS----EFDPEKVSKNCDVLFTALP   75 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCB----CCCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccccCCCcccccCchhhcccccc----ccCHhHhccccceEEEccc
Confidence            579999999999999999999988865 666553333334332211111  111222    1245556678999999863

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.30  E-value=9.8e-05  Score=60.98  Aligned_cols=77  Identities=16%  Similarity=0.215  Sum_probs=47.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhh-hhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD-ISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~D-L~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +++.||+|+||+|++|+-+..+|..++.+ ||..+--....|+... ..............  ...++.++++|+|+.+.
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dvvf~al   79 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHLITQDLPNLV--AVKDADFSNVDAVFCCL   79 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGGTTSCCCCCB--CGGGCCGGGCSEEEECC
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCccccccccccccccccch--hhhhhhhcccceeeecc
Confidence            56789999999999999999999988865 7777654443333221 11100011111111  11235578999999985


Q ss_pred             C
Q 021932          123 G  123 (305)
Q Consensus       123 g  123 (305)
                      .
T Consensus        80 p   80 (183)
T d2cvoa1          80 P   80 (183)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=0.00056  Score=58.57  Aligned_cols=106  Identities=10%  Similarity=0.051  Sum_probs=66.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCC---HHHHhCCCCEEEEcCCCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ---LEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d---~~~al~~aDiVIi~ag~~  125 (305)
                      |.|+||+|++|++++..|++.|. .+|+.+|.-........+.+.. ...........+   ....+.+.++|+.+|+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~-~~V~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLN-IADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGGGHHHHTSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCC-CeEEEEECCCCcchhhcccccc-hhhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            78999999999999999999884 2788888533111111222211 111111000000   012357888999988766


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCC
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPK  156 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~  156 (305)
                      .............|......+.+...+.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  110 (307)
T d1eq2a_          80 STTEWDGKYMMDNNYQYSKELLHYCLEREIP  110 (307)
T ss_dssp             CTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            5555556666777888888888888887754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.30  E-value=0.0004  Score=53.47  Aligned_cols=69  Identities=14%  Similarity=0.177  Sum_probs=45.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecC--CCHHHH-hCCCCEEEEcCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQ--QQLEDA-LTGMDIVIIPAG  123 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t--~d~~~a-l~~aDiVIi~ag  123 (305)
                      |+.|+|+ |.+|+.++..|...|+  +++++|.++..  +.++.+..  ..+..-..+  ..++++ +++||.||++.+
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~~g~--~vvvid~d~~~--~~~~~~~~--~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~   73 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEEK--VNAYASYA--THAVIANATEENELLSLGIRNFEYVIVAIG   73 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHHH--HHHTTTTC--SEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCC--eEEEecCcHHH--HHHHHHhC--CcceeeecccchhhhccCCccccEEEEEcC
Confidence            7899999 9999999999999999  99999997621  12222221  111111111  123333 689999888753

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.0027  Score=54.47  Aligned_cols=117  Identities=19%  Similarity=0.212  Sum_probs=73.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC----------HHHHhC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ----------LEDALT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d----------~~~al~  113 (305)
                      +.+.|+||++-+|..+|..|++.|.  .|++.|+++  +...+.++.......++..+.. -++          ..+.+.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4688999999999999999999998  999999876  2333444554322223333211 112          223356


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhh----HHHHHHHHHHHHHhC-CCcEEEEecCC
Q 021932          114 GMDIVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKTLCEGIAKCC-PKAIVNLISNP  165 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~---r~d~~~~N----~~i~~~i~~~I~~~~-p~aiviv~tNP  165 (305)
                      .-|++|.+||......   .+   ....+..|    +-..+.+++.+.+.. ..+.|++++-.
T Consensus        89 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~  151 (257)
T d1xg5a_          89 GVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSM  151 (257)
T ss_dssp             CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCG
T ss_pred             CCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEech
Confidence            7899999998643211   12   22334444    456677777777666 46777777543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0004  Score=59.54  Aligned_cols=114  Identities=16%  Similarity=0.179  Sum_probs=68.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEE-EecCC---CHHHHhCCCCEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRG-FLGQQ---QLEDALTGMDIV  118 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~-~~~t~---d~~~al~~aDiV  118 (305)
                      +.+++.|+||++-+|..+|..|+..|.  +|++.|+++  +...+.++....   .+.. +....   ..-+.+..-|++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~---~~~~Dv~d~~~v~~~~~~~g~iDil   80 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIE---PVCVDLGDWEATERALGSVGPVDLL   80 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE---EEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCe---EEEEeCCCHHHHHHHHHHhCCceEE
Confidence            345899999999999999999999998  999999976  222222222110   0110 00000   112335688999


Q ss_pred             EEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 021932          119 IIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       119 Ii~ag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |.+||......   .+   ....+..|+    .+.+.+++.+.+....+.|++++
T Consensus        81 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~is  135 (244)
T d1pr9a_          81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVS  135 (244)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             EeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecc
Confidence            99998753221   12   223344444    35666677666555566676665

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.16  E-value=0.00016  Score=57.91  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=31.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      |||+|||++|.+|.++|..|+..|+  +|++.++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            7999996669999999999999999  999999986

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.00087  Score=56.85  Aligned_cols=112  Identities=18%  Similarity=0.178  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      +.+++.|+||++-+|..++..|++.|.  +|++.|+++..  ..+..+.....+++.  .-....+.+...|++|..||.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~~--l~~~~~~~~~~Dv~~--~~~~~~~~~g~iD~lVnnAG~   76 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEEL--LKRSGHRYVVCDLRK--DLDLLFEKVKEVDILVLNAGG   76 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHTCSEEEECCTTT--CHHHHHHHSCCCSEEEECCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHhcCCcEEEcchHH--HHHHHHHHhCCCcEEEecccc
Confidence            345899999999999999999999998  99999997510  000010000000000  001234667899999999997


Q ss_pred             CCCCC---Cch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 021932          125 PRKPG---MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       125 ~~~~g---~~r---~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +....   .+.   .+.+..|+    .+.+.+.+.+++... +.+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~-G~ii~i~  124 (234)
T d1o5ia_          77 PKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGW-GRIVAIT  124 (234)
T ss_dssp             CCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEEC
T ss_pred             cCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccc-ccccccc
Confidence            64321   122   22334444    356677777776544 4444443

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.15  E-value=0.0016  Score=55.80  Aligned_cols=113  Identities=22%  Similarity=0.305  Sum_probs=70.8

Q ss_pred             EE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCCH----------HHHhC
Q 021932           48 KV-AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL----------EDALT  113 (305)
Q Consensus        48 KI-~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d~----------~~al~  113 (305)
                      || .|+||++-+|..+|..|+..|.  .|++.|+++  ++..+.++.+..  .++..+.. -+|.          .+.+.
T Consensus         2 KValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   77 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            76 6779999999999999999998  999999986  333334454322  12222211 1121          23346


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      .-|++|.+||......   .+   ....+..|+    ...+..++.+.+.+..+.|++++.
T Consensus        78 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS  138 (255)
T d1gega_          78 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS  138 (255)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccc
Confidence            8999999999753221   12   223444554    455566677777777787777653

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.12  E-value=0.00022  Score=56.82  Aligned_cols=71  Identities=14%  Similarity=0.117  Sum_probs=46.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEe--cCCCHHHHhCCCCEEEEcC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL--GQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~--~t~d~~~al~~aDiVIi~a  122 (305)
                      +||.|+|| |.+|.++|..|...|+  +|+++|++..  .+.++.............  ......+.+...|+++.+.
T Consensus         3 K~IliiGa-G~~G~~~a~~L~~~g~--~V~v~dr~~~--~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLE--SAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHHTTTC--EEEEEESCHH--HHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECChH--HHHHHHhcccccccccccccchhhhHhhhhccceeEeec
Confidence            48999999 9999999999999999  9999999762  222333321111111110  0123456678899888764

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00053  Score=58.67  Aligned_cols=113  Identities=15%  Similarity=0.220  Sum_probs=67.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCH---H---HHhCCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQL---E---DALTGMD  116 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~---~---~al~~aD  116 (305)
                      +-+++.|+||++-+|..+|..|+..|.  +|++.|+++  +.....++....   .+. . .-+|.   +   +.+..-|
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~---~~~-~-Dv~~~~~v~~~~~~~g~iD   76 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGIE---PVC-V-DLGDWDATEKALGGIGPVD   76 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE---EEE-C-CTTCHHHHHHHHTTCCCCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCe---EEE-E-eCCCHHHHHHHHHHcCCCe
Confidence            345889999999999999999999998  999999875  222222222111   111 1 11121   1   2246889


Q ss_pred             EEEEcCCCCCCCC---Cch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          117 IVIIPAGVPRKPG---MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       117 iVIi~ag~~~~~g---~~r---~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ++|.+||......   .+.   ...+..|+.    +.+...+.+.+....+.+++++.
T Consensus        77 ilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS  134 (242)
T d1cyda_          77 LLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS  134 (242)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             EEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccch
Confidence            9999999753221   122   233444443    55556666555555666666653

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.02  E-value=0.00095  Score=54.20  Aligned_cols=80  Identities=19%  Similarity=0.235  Sum_probs=55.2

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      .+.++-||.|+|+ |.+|...+...+..|-  ++..+|.+.. ..+..+....  ..... ......+++.+++||+||-
T Consensus        28 ~gv~pa~V~ViGa-GvaG~~A~~~A~~lGA--~V~~~D~~~~~l~~l~~~~~~--~~~~~-~~~~~~l~~~~~~aDivI~  101 (168)
T d1pjca1          28 PGVKPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGS--RVELL-YSNSAEIETAVAEADLLIG  101 (168)
T ss_dssp             TTBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG--GSEEE-ECCHHHHHHHHHTCSEEEE
T ss_pred             CCCCCcEEEEECC-ChHHHHHHHHHhhCCC--EEEEEeCcHHHHHHHHHhhcc--cceee-hhhhhhHHHhhccCcEEEE
Confidence            4567789999999 9999999988888886  9999999762 1111111111  12222 2223357889999999999


Q ss_pred             cCCCCCC
Q 021932          121 PAGVPRK  127 (305)
Q Consensus       121 ~ag~~~~  127 (305)
                      ++-.|.+
T Consensus       102 aalipG~  108 (168)
T d1pjca1         102 AVLVPGR  108 (168)
T ss_dssp             CCCCTTS
T ss_pred             eeecCCc
Confidence            9877644

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.95  E-value=0.0048  Score=52.69  Aligned_cols=115  Identities=14%  Similarity=0.173  Sum_probs=67.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC----------HHHHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ----------LEDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d----------~~~al  112 (305)
                      .+.+.|+||++-+|..+|..|++.|.  .|++.|+++  +...+.++.+.. ..++..+.. -+|          ..+.+
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            34788999999999999999999998  999999976  222233443321 122222111 011          11234


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRKPG---MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ...|++|.+||......   .+.   ...+..|+    .+.+.+++.+.+.....+|.+.|
T Consensus        82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S  142 (251)
T d1vl8a_          82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGS  142 (251)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccccccccccc
Confidence            57999999999753321   122   23344454    45566666666554334444433

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.91  E-value=0.0011  Score=53.22  Aligned_cols=106  Identities=18%  Similarity=0.211  Sum_probs=65.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .+..||.|||+ |.+|..++..|...|. .++.++.+...  .+.++.... ......   -.++.+++.++|+||.+.+
T Consensus        22 l~~~~ilviGa-G~~g~~v~~~L~~~g~-~~i~v~nRt~~--ka~~l~~~~-~~~~~~---~~~~~~~l~~~Divi~ats   93 (159)
T d1gpja2          22 LHDKTVLVVGA-GEMGKTVAKSLVDRGV-RAVLVANRTYE--RAVELARDL-GGEAVR---FDELVDHLARSDVVVSATA   93 (159)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCC-SEEEEECSSHH--HHHHHHHHH-TCEECC---GGGHHHHHHTCSEEEECCS
T ss_pred             cccCeEEEECC-CHHHHHHHHHHHhcCC-cEEEEEcCcHH--HHHHHHHhh-hccccc---chhHHHHhccCCEEEEecC
Confidence            34569999999 9999999999988875 48899987542  222333221 111111   2467789999999999987


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC--CCcEEEEecCCCCcc
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCC--PKAIVNLISNPVNST  169 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~--p~aiviv~tNPvd~l  169 (305)
                      .+..- .++        +.++   ..+++..  ...+++=.+.|-|+=
T Consensus        94 s~~~i-i~~--------~~i~---~~~~~r~~~~~~~iiDlavPr~vd  129 (159)
T d1gpja2          94 APHPV-IHV--------DDVR---EALRKRDRRSPILIIDIANPRDVE  129 (159)
T ss_dssp             SSSCC-BCH--------HHHH---HHHHHCSSCCCEEEEECCSSCSBC
T ss_pred             CCCcc-ccH--------hhhH---HHHHhcccCCCeEEEeecCCCCcC
Confidence            55321 111        1122   2333332  234677779997763

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.90  E-value=0.00067  Score=55.36  Aligned_cols=74  Identities=16%  Similarity=0.281  Sum_probs=45.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---Cchhhhhhhcc--c--CCceEEEEecCCCHHHHhCCCCEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHM--D--TNAVVRGFLGQQQLEDALTGMDIV  118 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~--~--~~~~v~~~~~t~d~~~al~~aDiV  118 (305)
                      |+||+|+||+|++|.-+...|..++.+ ||.-+-...   ..|+...-.+.  .  ........   .+......++|++
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dvv   76 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM---SDVRDFSADVDVV   76 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEE---SCGGGTCTTCCEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccccccc---hhhhhhhccccee
Confidence            579999999999999999999998765 554442211   22332211111  1  11122222   2334556899999


Q ss_pred             EEcCC
Q 021932          119 IIPAG  123 (305)
Q Consensus       119 Ii~ag  123 (305)
                      |++.+
T Consensus        77 f~alp   81 (179)
T d2g17a1          77 FLATA   81 (179)
T ss_dssp             EECSC
T ss_pred             ecccc
Confidence            99853

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.89  E-value=0.0023  Score=52.56  Aligned_cols=106  Identities=19%  Similarity=0.207  Sum_probs=65.9

Q ss_pred             cccccccCCC-CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHH
Q 021932           32 GLGRMDCRAK-GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLE  109 (305)
Q Consensus        32 ~~~~~~~~~~-~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~  109 (305)
                      -|.+..+... .....++|+|+|. |.+|..++..+...+.  +|..+|.... .....+..       +..   ..+++
T Consensus        29 ~w~~~~~~~~~~~l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~-------~~~---~~~l~   95 (188)
T d2naca1          29 GWNIADCVSHAYDLEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATRE   95 (188)
T ss_dssp             CCCHHHHHTTCCCCTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHH
T ss_pred             CCCCcccCCcceeccccceeeccc-cccchhhhhhhhccCc--eEEEEeecccccccccccc-------ccc---cCCHH
Confidence            3554433322 3445679999999 9999999999987777  9999998652 11111111       111   23577


Q ss_pred             HHhCCCCEEEEcCCCC-CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          110 DALTGMDIVIIPAGVP-RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       110 ~al~~aDiVIi~ag~~-~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +.+++||+|++..... ...++     +  |.       +.+....+++++||++-
T Consensus        96 ~~l~~sD~v~~~~plt~~T~~l-----i--~~-------~~l~~mk~ga~lIN~aR  137 (188)
T d2naca1          96 DMYPVCDVVTLNCPLHPETEHM-----I--ND-------ETLKLFKRGAYIVNTAR  137 (188)
T ss_dssp             HHGGGCSEEEECSCCCTTTTTC-----B--SH-------HHHTTSCTTEEEEECSC
T ss_pred             HHHHhccchhhcccccccchhh-----h--HH-------HHHHhCCCCCEEEecCc
Confidence            8999999999976432 11121     1  21       22333457889999873

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.88  E-value=0.00095  Score=57.30  Aligned_cols=113  Identities=13%  Similarity=0.082  Sum_probs=69.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC----------HHHHhC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ----------LEDALT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d----------~~~al~  113 (305)
                      +.+.|+||++-+|..+|..|+..|.  .|++.|+++  ++..+.++...   .++..+.. -+|          ..+.+.
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAFG   81 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCC---CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4788889999999999999999998  999999976  22222233211   12222211 112          123345


Q ss_pred             CCCEEEEcCCCCCCC---CCch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKP---GMTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~---g~~r---~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      .-|++|.+||.....   ..+.   .+.+..|+    ...+..++.+.+....+.|++++.
T Consensus        82 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS  142 (251)
T d1zk4a1          82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSS  142 (251)
T ss_dssp             SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECC
T ss_pred             CceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeec
Confidence            789999999864322   1222   23444454    456667777776666667777764

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.87  E-value=0.0024  Score=52.80  Aligned_cols=93  Identities=22%  Similarity=0.303  Sum_probs=61.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ...++|+|||. |.+|+.+|..+..-|.  +|..+|.........+..       +..   ..++++.++.||+|+++..
T Consensus        47 L~gktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~-------~~~---~~~l~~ll~~sD~i~~~~p  113 (193)
T d1mx3a1          47 IRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQR---VSTLQDLLFHSDCVTLHCG  113 (193)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEE---CSSHHHHHHHCSEEEECCC
T ss_pred             eeCceEEEecc-ccccccceeeeecccc--ceeeccCcccccchhhhc-------ccc---ccchhhccccCCEEEEeec
Confidence            34569999999 9999999999987787  999999754211111111       111   2367888999999999864


Q ss_pred             C-CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          124 V-PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       124 ~-~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      . +...++       -|.+       .+....|++++||++
T Consensus       114 lt~~T~~l-------i~~~-------~l~~mk~~a~lIN~s  140 (193)
T d1mx3a1         114 LNEHNHHL-------INDF-------TVKQMRQGAFLVNTA  140 (193)
T ss_dssp             CCTTCTTS-------BSHH-------HHTTSCTTEEEEECS
T ss_pred             ccccchhh-------hhHH-------HHhccCCCCeEEecC
Confidence            2 222222       1211       233345889999987

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.0014  Score=47.45  Aligned_cols=72  Identities=17%  Similarity=0.272  Sum_probs=49.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      .+||+|+|. |-.|.++|..|...|.  ++.++|.+.......++.+   ...+..  +..+ ++.+.+.|+||++-|+|
T Consensus         5 ~K~v~ViGl-G~sG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~---~~~~~~--~~~~-~~~~~~~d~vi~SPGi~   75 (93)
T d2jfga1           5 GKNVVIIGL-GLTGLSCVDFFLARGV--TPRVMDTRMTPPGLDKLPE---AVERHT--GSLN-DEWLMAADLIVASPGIA   75 (93)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESSSSCTTGGGSCT---TSCEEE--SBCC-HHHHHHCSEEEECTTSC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEeeCCcCchhHHHHhh---ccceee--cccc-hhhhccCCEEEECCCCC
Confidence            458999999 9999999999999998  8999998652111122222   122221  1212 46789999999998876


Q ss_pred             C
Q 021932          126 R  126 (305)
Q Consensus       126 ~  126 (305)
                      .
T Consensus        76 ~   76 (93)
T d2jfga1          76 L   76 (93)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.85  E-value=0.0058  Score=52.25  Aligned_cols=112  Identities=19%  Similarity=0.227  Sum_probs=69.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC----------HHHHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ----------LEDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d----------~~~al  112 (305)
                      .+++.|+||++-+|..+|..|+..|.  +|++.|+++  ++..+.++..     +...+. .-+|          ..+.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~-----~~~~~~~Dvt~~~~v~~~~~~~~~~~   77 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGP-----AACAIALDVTDQASIDRCVAELLDRW   77 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            45788999999999999999999998  999999975  2222333321     111110 0011          11234


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..-|++|..||......   .+   ....+..|+    ...+.+++.+.+....+.|++++.
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS  139 (256)
T d1k2wa_          78 GSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMAS  139 (256)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccc
Confidence            57999999999653221   12   233455554    455566666666665677777653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0094  Score=50.75  Aligned_cols=114  Identities=19%  Similarity=0.115  Sum_probs=70.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCCH----------HHHhC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL----------EDALT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d~----------~~al~  113 (305)
                      +.+.|+||++-+|..+|..|++.|.  .|++.|+++  +.....++.......++..+.. -+|.          .+.+.
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            4788889999999999999999998  999999976  2222333433211122322211 1121          12345


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHhhH----HHHHHHHHHHHHhC--CCcEEEEecC
Q 021932          114 GMDIVIIPAGVPRKPGMTRDDLFNINA----GIVKTLCEGIAKCC--PKAIVNLISN  164 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g~~r~d~~~~N~----~i~~~i~~~I~~~~--p~aiviv~tN  164 (305)
                      ..|++|..||.....  +..+.+..|+    ...+..++.+.+..  ..+.|++++.
T Consensus        82 ~iDilVnnAg~~~~~--~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS  136 (254)
T d2gdza1          82 RLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS  136 (254)
T ss_dssp             CCCEEEECCCCCCSS--SHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CcCeecccccccccc--cchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeecc
Confidence            799999999876432  3444555554    45666667666543  3466777653

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.81  E-value=0.0014  Score=54.12  Aligned_cols=95  Identities=20%  Similarity=0.189  Sum_probs=61.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ....++|+|||. |.+|+.++..+...|.  ++..+|......... .....    ..    ..++++.++.||+|++..
T Consensus        44 ~l~g~tvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~-~~~~~----~~----~~~l~~ll~~sD~v~l~~  111 (191)
T d1gdha1          44 KLDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDE-ASYQA----TF----HDSLDSLLSVSQFFSLNA  111 (191)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHH-HHHTC----EE----CSSHHHHHHHCSEEEECC
T ss_pred             eecccceEEeec-ccchHHHHHHHHhhcc--ccccccccccccchh-hcccc----cc----cCCHHHHHhhCCeEEecC
Confidence            344569999999 9999999998887777  999999865221111 11110    11    135778999999999976


Q ss_pred             CC-CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          123 GV-PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       123 g~-~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      .. +...++     +  |.       +.+....|++++||++
T Consensus       112 plt~~T~~l-----i--~~-------~~l~~mk~~a~lIN~s  139 (191)
T d1gdha1         112 PSTPETRYF-----F--NK-------ATIKSLPQGAIVVNTA  139 (191)
T ss_dssp             CCCTTTTTC-----B--SH-------HHHTTSCTTEEEEECS
T ss_pred             CCCchHhhe-----e--cH-------HHhhCcCCccEEEecC
Confidence            42 222222     1  21       2233445789999987

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.78  E-value=0.0095  Score=50.98  Aligned_cols=114  Identities=18%  Similarity=0.189  Sum_probs=67.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCCH----------HHHhC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL----------EDALT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d~----------~~al~  113 (305)
                      +.+.|+||++-+|..+|..|++.|.  .|++.|+++  +.....++.......++..+.. -+|.          .+.+.
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            3788889999999999999999998  999999976  2222233332211222222211 1121          22346


Q ss_pred             CCCEEEEcCCCCCCCC----Cch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 021932          114 GMDIVIIPAGVPRKPG----MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g----~~r---~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ..|++|..||.....+    .+.   ...+..|+    ...+.+.+.+++.. .+.|++++
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~is  142 (258)
T d1iy8a_          83 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTA  142 (258)
T ss_dssp             CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEC
T ss_pred             CCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc-CCCCcccc
Confidence            8999999999643222    222   23344454    45555666666554 45555554

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.012  Score=50.05  Aligned_cols=117  Identities=20%  Similarity=0.248  Sum_probs=72.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCCH----------HHHhC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQL----------EDALT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d~----------~~al~  113 (305)
                      +.+.|+||++-+|..+|..|++.|.  .|++.|+++  ++..+.++...  ..++..+. .-+|.          .+.+.
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            4678889999999999999999998  999999976  33334444432  22333221 11222          12345


Q ss_pred             CCCEEEEcCCCCCCCCC--ch----hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 021932          114 GMDIVIIPAGVPRKPGM--TR----DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g~--~r----~d~~~~N----~~i~~~i~~~I~~~~p~aiviv~tNPvd~  168 (305)
                      ..|++|.++|.......  ..    .+.+..|    +-..+.+.+.+.+.. .+.|++++.....
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~G~Iv~isS~~~~  147 (244)
T d1yb1a_          84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAAGH  147 (244)
T ss_dssp             CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC-C
T ss_pred             CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC-CceEEEeecchhc
Confidence            79999999987543221  11    2233334    456677777777654 5677777655544

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.74  E-value=0.0052  Score=50.24  Aligned_cols=92  Identities=26%  Similarity=0.359  Sum_probs=60.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ...++|+|+|. |.+|+.++..+..-+.  +|..+|.........+..       ++.    .++++.++.||+|+++..
T Consensus        42 l~~k~vgiiG~-G~IG~~va~~~~~fg~--~v~~~d~~~~~~~~~~~~-------~~~----~~l~ell~~sDiv~~~~P  107 (184)
T d1ygya1          42 IFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL----LSLDDLLARADFISVHLP  107 (184)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE----CCHHHHHHHCSEEEECCC
T ss_pred             ccceeeeeccc-cchhHHHHHHhhhccc--eEEeecCCCChhHHhhcC-------cee----ccHHHHHhhCCEEEEcCC
Confidence            34569999999 9999999998887676  999999754322222111       111    256789999999999764


Q ss_pred             C-CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          124 V-PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       124 ~-~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      . +...++     +  |.       +.+....|++++|+++
T Consensus       108 lt~~T~~l-----i--n~-------~~l~~mk~~a~lIN~s  134 (184)
T d1ygya1         108 KTPETAGL-----I--DK-------EALAKTKPGVIIVNAA  134 (184)
T ss_dssp             CSTTTTTC-----B--CH-------HHHTTSCTTEEEEECS
T ss_pred             CCchhhhh-----h--hH-------HHHhhhCCCceEEEec
Confidence            2 222221     1  21       2233445889999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.72  E-value=0.0038  Score=51.05  Aligned_cols=88  Identities=23%  Similarity=0.254  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ..++|+|||. |.+|..++..+..-|.  +|..+|.....+        . ..   .   ..++++.+++||+|+++...
T Consensus        41 ~gk~vgIiG~-G~IG~~va~~l~~~g~--~v~~~d~~~~~~--------~-~~---~---~~~l~ell~~sDiv~~~~pl  102 (181)
T d1qp8a1          41 QGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKEG--------P-WR---F---TNSLEEALREARAAVCALPL  102 (181)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCCS--------S-SC---C---BSCSHHHHTTCSEEEECCCC
T ss_pred             cCceEEEecc-ccccccceeeeecccc--cccccccccccc--------c-ee---e---eechhhhhhccchhhccccc
Confidence            4469999999 9999999999988888  999999864211        0 00   0   12467899999999997532


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                        .+ +++. ++  |.       +.+....|++++|+++
T Consensus       103 --~~-~t~~-li--~~-------~~l~~mk~~ailIN~~  128 (181)
T d1qp8a1         103 --NK-HTRG-LV--KY-------QHLALMAEDAVFVNVG  128 (181)
T ss_dssp             --ST-TTTT-CB--CH-------HHHTTSCTTCEEEECS
T ss_pred             --cc-cccc-cc--cc-------ceeeeccccceEEecc
Confidence              21 1111 11  21       3344445889999987

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.70  E-value=0.00093  Score=56.96  Aligned_cols=111  Identities=18%  Similarity=0.253  Sum_probs=69.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-----chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-----~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      .+++.|+||++-+|..+|..|++.|.  +|++.|+++.     .....|+.+...   ++...  ....+.+..-|++|.
T Consensus         7 gK~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~Dv~~~~~---v~~~~--~~~~~~~g~iDiLVn   79 (237)
T d1uzma1           7 SRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSDA---VDRAF--TAVEEHQGPVEVLVS   79 (237)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHHH---HHHHH--HHHHHHHSSCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCceEEEEecCCHHH---HHHHH--HHHHHhcCCceEEEe
Confidence            35899999999999999999999998  9999999762     222344444321   11000  122355678999999


Q ss_pred             cCCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          121 PAGVPRKP---GMT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       121 ~ag~~~~~---g~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +||.....   ..+   ..+.+..|+.    ..+.+++.+.+.. .+.|++++.
T Consensus        80 nAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Iv~isS  132 (237)
T d1uzma1          80 NAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIGS  132 (237)
T ss_dssp             ECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             eecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC-CCceEEEcc
Confidence            99964321   122   2234455543    4566666666655 455555553

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.68  E-value=0.0029  Score=54.53  Aligned_cols=112  Identities=18%  Similarity=0.188  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC---H-------HHHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ---L-------EDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d---~-------~~al  112 (305)
                      .+.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++..+.++....   .+..+. .-+|   .       .+.+
T Consensus         6 gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCC---ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            34788899999999999999999998  999999976  222333443221   122111 1111   1       1234


Q ss_pred             CCCCEEEEcCCCCCCC-----CCc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRKP-----GMT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~-----g~~---r~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ...|++|.+||.....     ..+   ....+..|+    -..+..++.+.+... +-+++++
T Consensus        81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~ii~is  142 (268)
T d2bgka1          81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKK-GSIVFTA  142 (268)
T ss_dssp             SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTC-EEEEEEC
T ss_pred             CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCC-CCccccc
Confidence            5789999999864321     122   122344454    455666666665543 4444444

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.66  E-value=0.00077  Score=53.79  Aligned_cols=70  Identities=23%  Similarity=0.427  Sum_probs=46.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      -||+|+||+|++|.-+...|..+++ ..++.++.-++..|+..  ...  ........ .  .+..+.+.|+++++.+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~--~~~--~~~~~~~~-~--~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL--KFK--DQDITIEE-T--TETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEE--EET--TEEEEEEE-C--CTTTTTTCSEEEECSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccc--ccc--CCcccccc-c--chhhhhhhhhhhhccC
Confidence            3899999999999999999988864 56888876544333322  111  12222211 1  2356789999999864

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.65  E-value=0.004  Score=51.64  Aligned_cols=91  Identities=22%  Similarity=0.295  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ..++|+|||. |.+|+.+|..+..-|.  +|..||.........   + ..    .    ..++++.++.||+|+++...
T Consensus        42 ~gk~vgIiG~-G~IG~~va~~l~~fg~--~V~~~d~~~~~~~~~---~-~~----~----~~~l~~~l~~sDii~~~~pl  106 (197)
T d1j4aa1          42 RDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPELEK---K-GY----Y----VDSLDDLYKQADVISLHVPD  106 (197)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHH---T-TC----B----CSCHHHHHHHCSEEEECSCC
T ss_pred             cCCeEEEecc-cccchhHHHhHhhhcc--cccccCccccccccc---c-ee----e----eccccccccccccccccCCc
Confidence            3469999998 9999999999988787  999999754211111   1 10    1    13577899999999998632


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      -  + .++ .++  |.+.       ++...+++++|+++
T Consensus       107 t--~-~T~-~li--~~~~-------l~~mk~~a~lIN~s  132 (197)
T d1j4aa1         107 V--P-ANV-HMI--NDES-------IAKMKQDVVIVNVS  132 (197)
T ss_dssp             C--G-GGT-TCB--SHHH-------HHHSCTTEEEEECS
T ss_pred             c--c-ccc-ccc--cHHH-------HhhhCCccEEEecC
Confidence            1  1 111 111  2222       23345788999886

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.62  E-value=0.0021  Score=54.81  Aligned_cols=114  Identities=19%  Similarity=0.173  Sum_probs=64.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCce------EEEEecCCCHHHHhCCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAV------VRGFLGQQQLEDALTGMD  116 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~------v~~~~~t~d~~~al~~aD  116 (305)
                      +.+++.|+||++-+|..+|..|+..|.  +|++.|+++  ++..+.++.......+      ++...  ....+.+..-|
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~--~~~~~~~g~iD   79 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGF--AEALAHLGRLD   79 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHH--HHHHHHHSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHH--HHHHHhcCCce
Confidence            345889999999999999999999998  999999976  1111111111000000      10000  01123446799


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932          117 IVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       117 iVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ++|.+||......   .+   ....+..|+.    ..+.+.+.+.+.. .+.+++.+
T Consensus        80 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~~~i~~~s  135 (242)
T d1ulsa_          80 GVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN-PGSIVLTA  135 (242)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CEEEEEEC
T ss_pred             EEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccc-cceeeeec
Confidence            9999999754321   12   2234455554    4445555554433 34454443

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.62  E-value=0.011  Score=50.38  Aligned_cols=115  Identities=14%  Similarity=0.145  Sum_probs=70.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEec-CCCH----------HHHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLG-QQQL----------EDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-t~d~----------~~al  112 (305)
                      .+.+.|+||++-+|..+|..|++.|.  .|++.|+++.  ...+.++.... ..++..+.. -+|.          .+.+
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADL   85 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45788999999999999999999998  9999999862  22223333221 112222111 1121          2334


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRKPG---MTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ..-|++|.+||......   .+.   .+.+..|+    ...+.+++.+.+....+.+++.+
T Consensus        86 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~  146 (260)
T d1h5qa_          86 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTS  146 (260)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             CCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEee
Confidence            58999999998643221   122   23444554    45566777777777677766654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.61  E-value=0.016  Score=43.04  Aligned_cols=71  Identities=14%  Similarity=0.133  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +.+||.|||+ |.+|..-+..|+..|-  ++.+++....... .++.+.   ..++......+ ++.+.++++|+.+.+
T Consensus        11 ~~k~vlVvG~-G~va~~ka~~ll~~ga--~v~v~~~~~~~~~-~~~~~~---~~i~~~~~~~~-~~dl~~~~lv~~at~   81 (113)
T d1pjqa1          11 RDRDCLIVGG-GDVAERKARLLLEAGA--RLTVNALTFIPQF-TVWANE---GMLTLVEGPFD-ETLLDSCWLAIAATD   81 (113)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTB--EEEEEESSCCHHH-HHHHTT---TSCEEEESSCC-GGGGTTCSEEEECCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccCChHH-HHHHhc---CCceeeccCCC-HHHhCCCcEEeecCC
Confidence            3459999999 9999999999999987  8999987543221 222222   12222221222 367999999998753

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.60  E-value=0.0019  Score=53.68  Aligned_cols=92  Identities=24%  Similarity=0.213  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ..++|+|+|. |.+|+.++..+..-|.  +|..||.....+.         ......    .++++.++.||+|+++...
T Consensus        44 ~~ktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~---------~~~~~~----~~l~~l~~~~D~v~~~~pl  107 (199)
T d1dxya1          44 GQQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKGD---------HPDFDY----VSLEDLFKQSDVIDLHVPG  107 (199)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSC---------CTTCEE----CCHHHHHHHCSEEEECCCC
T ss_pred             cceeeeeeec-ccccccccccccccce--eeeccCCccchhh---------hcchhH----HHHHHHHHhcccceeeecc
Confidence            3459999999 9999999999988887  9999997542111         011121    2567889999999997532


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCC
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP  165 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNP  165 (305)
                      .  + +++ .++  |.       +.+....+++++|+++=.
T Consensus       108 t--~-~T~-~li--~~-------~~l~~mk~~a~lIN~aRG  135 (199)
T d1dxya1         108 I--E-QNT-HII--NE-------AAFNLMKPGAIVINTARP  135 (199)
T ss_dssp             C--G-GGT-TSB--CH-------HHHHHSCTTEEEEECSCT
T ss_pred             c--c-ccc-ccc--cH-------HHhhccCCceEEEecccH
Confidence            1  1 111 111  21       233334588999999743

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.014  Score=49.85  Aligned_cols=114  Identities=17%  Similarity=0.214  Sum_probs=69.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCCH----------HHH
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL----------EDA  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d~----------~~a  111 (305)
                      +.+.+.|+||++-+|..+|..|+..|.  .|++.|+++  ++..+.++....  .++..+.. -+|.          .+.
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~   85 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345888999999999999999999998  999999876  222333444321  12222211 1121          233


Q ss_pred             hCCCCEEEEcCCCCCCC--CCch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 021932          112 LTGMDIVIIPAGVPRKP--GMTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~--g~~r---~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +..-|++|.+||.....  ..+.   ...+..|+    ...+.+++.+.+... +.|++++
T Consensus        86 ~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-g~Ii~is  145 (255)
T d1fmca_          86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGG-GVILTIT  145 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEEC
T ss_pred             cCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccc-ccccccc
Confidence            46899999999865322  2222   22344453    456667777777654 4445554

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.55  E-value=0.011  Score=50.73  Aligned_cols=114  Identities=15%  Similarity=0.165  Sum_probs=70.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEec-CCC---H-------HHHh
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---L-------EDAL  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~~-t~d---~-------~~al  112 (305)
                      +.+.|+||++-+|..+|..|+..|.  +|++.|++.   ++..+.++....  .++..+.. -+|   .       .+.+
T Consensus         8 K~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4788889999999999999999998  999999875   222233343321  22222111 111   1       1223


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~N----~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..-|++|.+||......   .+.   .+.+..|    ....+..++.+.+....+.|+++|.
T Consensus        84 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS  145 (261)
T d1geea_          84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS  145 (261)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhcccccccccccccc
Confidence            57899999999753221   122   2334445    4566777888877776676666653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.54  E-value=0.0035  Score=51.39  Aligned_cols=83  Identities=23%  Similarity=0.165  Sum_probs=52.7

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCc------eEE------------EE
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNA------VVR------------GF  102 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~------~v~------------~~  102 (305)
                      ...++-||.|+|| |.+|...+...+..|-  .|..+|++. ...+..++.......      ...            ..
T Consensus        25 g~V~pa~VvViGa-GvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~  101 (183)
T d1l7da1          25 GTVPPARVLVFGV-GVAGLQAIATAKRLGA--VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFR  101 (183)
T ss_dssp             EEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHHHTTCEECCC-----------------------
T ss_pred             CCcCCcEEEEEcC-cHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHH
Confidence            5667789999999 9999999888887776  999999987 222322222110000      000            00


Q ss_pred             -ecCCCHHHHhCCCCEEEEcCCCCCC
Q 021932          103 -LGQQQLEDALTGMDIVIIPAGVPRK  127 (305)
Q Consensus       103 -~~t~d~~~al~~aDiVIi~ag~~~~  127 (305)
                       .-...+.+.+++||+||-++-.|.+
T Consensus       102 ~~~~~~l~~~l~~aDlVI~talipG~  127 (183)
T d1l7da1         102 KKQAEAVLKELVKTDIAITTALIPGK  127 (183)
T ss_dssp             CCHHHHHHHHHTTCSEEEECCCCTTS
T ss_pred             HHHHHHHHHHHHhhhhheeeeecCCc
Confidence             0011244568999999999876643

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0017  Score=55.36  Aligned_cols=112  Identities=16%  Similarity=0.154  Sum_probs=65.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-----CCCHHHHhCCCCEEEEc
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-----QQQLEDALTGMDIVIIP  121 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-----t~d~~~al~~aDiVIi~  121 (305)
                      +.+.|+||++.+|..+|..|+..|.  +|++.|+++.+  ..++.+.. .........     .....+.+..-|++|.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~~--l~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~   81 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGA--KVIATDINESK--LQELEKYP-GIQTRVLDVTKKKQIDQFANEVERLDVLFNV   81 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HGGGGGST-TEEEEECCTTCHHHHHHHHHHCSCCSEEEEC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHH--HHHHHhcc-CCceeeeeccccccccccccccccceeEEec
Confidence            4677889999999999999999998  99999997621  11122211 111111000     01123445789999999


Q ss_pred             CCCCCCCC---Cch---hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          122 AGVPRKPG---MTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       122 ag~~~~~g---~~r---~d~~~~N----~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      +|......   .+.   ...+..|    ....+.+.+.+.+.. .+-+++++.
T Consensus        82 ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~-~g~Ii~isS  133 (245)
T d2ag5a1          82 AGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSS  133 (245)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             ccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCC-Cceeeeeec
Confidence            99754321   122   2223334    345566666666554 455555543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.51  E-value=0.011  Score=50.80  Aligned_cols=114  Identities=16%  Similarity=0.198  Sum_probs=68.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-CceEEEEecC-CC----------HHHHh
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQ-QQ----------LEDAL  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~t-~d----------~~~al  112 (305)
                      +.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++..+.++..... ..++..+... +|          ..+.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4788889999999999999999998  999999976  3333344443321 1233322111 12          11233


Q ss_pred             CCCCEEEEcCCCCCCCC-------Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRKPG-------MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g-------~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ..-|++|.+||......       ++   ....+..|+.    ..+.+.+.+.+. ..++|++.|
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (272)
T d1xkqa_          84 GKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSS  147 (272)
T ss_dssp             SCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             CCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccc
Confidence            57899999998753211       11   1223444543    556666666554 456666654

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.50  E-value=0.0049  Score=48.59  Aligned_cols=61  Identities=15%  Similarity=0.129  Sum_probs=39.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ||++||. |.||+.+|..|+..++  .++ ++....  ...++..... . .   .  .. .+.+.++|++|++.
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~--~~~-~~~~~~--~~~~~~~~~~-~-~---~--~~-~~~~~~~~~~i~~~   62 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFP--TLV-WNRTFE--KALRHQEEFG-S-E---A--VP-LERVAEARVIFTCL   62 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSC--EEE-ECSSTH--HHHHHHHHHC-C-E---E--CC-GGGGGGCSEEEECC
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCC--EEE-EeCCHH--HHHHHHHHcC-C-c---c--cc-cccccceeEEEecc
Confidence            7999998 9999999999998876  555 444332  1222222211 1 1   1  12 36678899999874

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.50  E-value=0.0014  Score=55.45  Aligned_cols=113  Identities=15%  Similarity=0.150  Sum_probs=63.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-h---hhhhhhcccCCceEEEEecCCCHHHHhC--CCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-G---VTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g---~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiVI  119 (305)
                      .++|.|+||+|-+|..++..|++.|.  +|+++|+++.. .   ...++..... ......  .....+.+.  ..|++|
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~iD~lI   76 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEASASVIVKMTDSFT-EQADQV--TAEVGKLLGDQKVDAIL   76 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSSEEEECCCCSCHH-HHHHHH--HHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccccccceeecccCcH-HHHHHH--HHHHHHHhCCCCceEEE
Confidence            35899999999999999999999998  99999986511 1   1111110000 000000  001112222  479999


Q ss_pred             EcCCCCC--CC-CCc----hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          120 IPAGVPR--KP-GMT----RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       120 i~ag~~~--~~-g~~----r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                      .+||...  .+ .+.    ....+..|+.......+.+.++- ..+.|++++
T Consensus        77 nnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~is  128 (236)
T d1dhra_          77 CVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAG  128 (236)
T ss_dssp             ECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEc
Confidence            9998422  11 111    12245566655555555555443 456777665

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0075  Score=49.29  Aligned_cols=101  Identities=22%  Similarity=0.283  Sum_probs=62.9

Q ss_pred             cccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHH
Q 021932           32 GLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA  111 (305)
Q Consensus        32 ~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~a  111 (305)
                      .|.+..... -....++|+|+|. |.+|..++..+...+.  +|..+|.......    .     ....    ..++++.
T Consensus        31 ~w~~~~~~~-~~l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~----~-----~~~~----~~~l~el   93 (188)
T d1sc6a1          31 VGNKLAAGS-FEARGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKLPL----G-----NATQ----VQHLSDL   93 (188)
T ss_dssp             CCC-----C-CCSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCCC----T-----TCEE----CSCHHHH
T ss_pred             CCccccccc-ccccceEEEEeec-ccchhhhhhhcccccc--eEeeccccccchh----h-----hhhh----hhhHHHH
Confidence            355544433 2344569999998 9999999999888887  9999997541100    0     0011    1357889


Q ss_pred             hCCCCEEEEcCCCC-CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          112 LTGMDIVIIPAGVP-RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       112 l~~aDiVIi~ag~~-~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ++.||+|+++.... ...++     +  |.       +.+.+..+++++|+++
T Consensus        94 l~~sDii~i~~plt~~T~~l-----i--~~-------~~l~~mk~~a~lIN~a  132 (188)
T d1sc6a1          94 LNMSDVVSLHVPENPSTKNM-----M--GA-------KEISLMKPGSLLINAS  132 (188)
T ss_dssp             HHHCSEEEECCCSSTTTTTC-----B--CH-------HHHHHSCTTEEEEECS
T ss_pred             HhhccceeecccCCcchhhh-----c--cH-------HHHhhCCCCCEEEEcC
Confidence            99999999987532 11121     1  21       2334456889999997

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.48  E-value=0.015  Score=49.62  Aligned_cols=112  Identities=15%  Similarity=0.188  Sum_probs=68.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecC-CC----------HHHHhC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ-QQ----------LEDALT  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t-~d----------~~~al~  113 (305)
                      +.+.|+||++-+|..+|..|+..|.  .|++.|+++  +.....++....  .++..+... +|          ..+.+.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDFG   81 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4788999999999999999999998  999999976  233333444321  222222111 11          123346


Q ss_pred             CCCEEEEcCCCCCCCC----Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932          114 GMDIVIIPAGVPRKPG----MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g----~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ..|++|..+|.....+    .+   ....+..|+.    ..+...+.+.+. ..+.||+++
T Consensus        82 ~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~is  141 (260)
T d1zema1          82 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTA  141 (260)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred             CCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeee
Confidence            8999999998643222    12   2233444544    455666666654 456666664

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.47  E-value=0.031  Score=47.45  Aligned_cols=117  Identities=19%  Similarity=0.161  Sum_probs=69.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEe--cCCC----------HH
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFL--GQQQ----------LE  109 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~--~t~d----------~~  109 (305)
                      +-+.+.|.|+||++-+|..+|..|+..|.  .+++++.+. ......++........+..+.  .+.+          ..
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIF   79 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHH
Confidence            34456899999999999999999999997  666665443 211122222211112222211  1111          11


Q ss_pred             HHhCCCCEEEEcCCCCCCCCCchhhHHHhhHH----HHHHHHHHHHHh--CCCcEEEEec
Q 021932          110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAG----IVKTLCEGIAKC--CPKAIVNLIS  163 (305)
Q Consensus       110 ~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~----i~~~i~~~I~~~--~p~aiviv~t  163 (305)
                      +.+...|++|..||....  .+-...+..|+.    ..+.+++.+.+.  ++.+.|++++
T Consensus        80 ~~~g~iDilvnnAG~~~~--~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~is  137 (254)
T d1sbya1          80 DQLKTVDILINGAGILDD--HQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANIC  137 (254)
T ss_dssp             HHHSCCCEEEECCCCCCT--TCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred             HHcCCCCEEEeCCCCCCH--HHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEe
Confidence            224689999999996543  233445555654    667777777554  3567777774

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.45  E-value=0.028  Score=48.31  Aligned_cols=116  Identities=14%  Similarity=0.064  Sum_probs=67.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCCH----------HHHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQL----------EDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d~----------~~al  112 (305)
                      .+.+.|+||+|-+|..+|..|+..|.  +|++.|+++  +...+.++.... ...+..+. .-++.          .+.+
T Consensus        25 gK~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          25 GKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhhc
Confidence            35788999999999999999999998  999999986  233334443321 11222211 11121          2234


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINAGI----VKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ...|++|.++|......   .+   ..+.+..|...    .+..+.........+.+++.+.
T Consensus       102 g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss  163 (294)
T d1w6ua_         102 GHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT  163 (294)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhccccccccccccccccc
Confidence            67999999998643322   11   12223334332    3444455555555566555543

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.43  E-value=0.0017  Score=54.82  Aligned_cols=34  Identities=26%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .||.|+||+|-+|..++..|++.|.  +|+++|+++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~--~V~~~~~~~   36 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSA   36 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            3899999999999999999999998  999999975

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.43  E-value=0.021  Score=48.32  Aligned_cols=112  Identities=21%  Similarity=0.249  Sum_probs=67.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCCH----------HHHhCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQL----------EDALTGM  115 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d~----------~~al~~a  115 (305)
                      +.+.|+||++-+|..+|..|+..|.  .|++.|+++.......+....  .++..+.. -+|.          .+.+..-
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~i   81 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFGRC   81 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            4788889999999999999999998  999999976322212222211  12222111 1121          1234589


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 021932          116 DIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       116 DiVIi~ag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      |++|..||......   .+   ....+..|+    ...+.+++.+.+.. .+.|++++
T Consensus        82 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~is  138 (247)
T d2ew8a1          82 DILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLT  138 (247)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCccccc
Confidence            99999999753221   12   223344443    45666777777665 45555665

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.42  E-value=0.012  Score=50.05  Aligned_cols=111  Identities=20%  Similarity=0.252  Sum_probs=67.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCCH----------HHHhCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL----------EDALTG  114 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d~----------~~al~~  114 (305)
                      .+.|+||++-+|..+|..|+..|.  .|+++|+++  +...+.++....  .++..+.. -+|.          .+.+..
T Consensus        12 valITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1          12 VALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            555779999999999999999998  999999976  333334454322  22222211 1121          133468


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 021932          115 MDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       115 aDiVIi~ag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      -|++|..+|......   .+   ..+.+..|+    ...+..++.+.+.. .+.||++|
T Consensus        88 iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnis  145 (251)
T d2c07a1          88 VDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINIS  145 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             ceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCC-CeEEEEEC
Confidence            999999998643322   11   223344453    45566677777664 46666665

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.41  E-value=0.017  Score=49.25  Aligned_cols=114  Identities=16%  Similarity=0.117  Sum_probs=67.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEec-CCC---H-------HHHh
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQ---L-------EDAL  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~~-t~d---~-------~~al  112 (305)
                      +.+.|+||++-+|..+|..|++.|.  .|++.|+++   ++....++.... ..++..+.. -+|   .       .+.+
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            3677889999999999999999998  999999875   122222232211 112221110 011   1       2234


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N----~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..-|++|..||......   .+   ..+.+..|    ....+..++.+.+.. .+.||+++.
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS  142 (260)
T d1x1ta1          82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIAS  142 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC-CceEeeccc
Confidence            57999999999753221   11   22344445    445667777777665 456666643

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.39  E-value=0.017  Score=49.61  Aligned_cols=114  Identities=18%  Similarity=0.243  Sum_probs=68.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-CceEEEEecC-CC---H-------HHHh
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQ-QQ---L-------EDAL  112 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~t-~d---~-------~~al  112 (305)
                      +.+.|+||++-+|..+|..|++.|.  .|++.|+++  ++..+.++..... ..++..+... +|   .       .+.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            4788999999999999999999998  999999976  3333444443321 1223322111 12   1       1223


Q ss_pred             CCCCEEEEcCCCCCCCC-----Cch---hhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRKPG-----MTR---DDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g-----~~r---~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ..-|++|.+||.....+     ++.   ...+..|+.    ..+.+.+.+.+. ..+.++++|
T Consensus        83 G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~ii~~s  144 (274)
T d1xhla_          83 GKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKT-KGEIVNVSS  144 (274)
T ss_dssp             SCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEECC
T ss_pred             CCceEEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccccc-ccccccchh
Confidence            47899999998643221     121   223344443    555666666544 456666654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.38  E-value=0.0082  Score=51.17  Aligned_cols=112  Identities=17%  Similarity=0.178  Sum_probs=66.8

Q ss_pred             EE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecC-CCH----------HHHhC
Q 021932           48 KV-AVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ-QQL----------EDALT  113 (305)
Q Consensus        48 KI-~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t-~d~----------~~al~  113 (305)
                      || .|+||++-+|..+|..|++.|.  .|++.|+++  ++..+.++....  .++..+... +|.          .+.+.
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            45 6789999999999999999998  999999976  333334444321  222222111 111          23345


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh-----CCCcEEEEec
Q 021932          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC-----CPKAIVNLIS  163 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~-----~p~aiviv~t  163 (305)
                      .-|++|.+||......   .+   ..+.+..|+.-...+.+.+.++     ...+.+++++
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~  139 (257)
T d2rhca1          79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIA  139 (257)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEEC
T ss_pred             CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccc
Confidence            7999999999754221   12   2345666766666665555432     2235555553

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.34  E-value=0.038  Score=47.13  Aligned_cols=117  Identities=20%  Similarity=0.116  Sum_probs=68.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEe-cCCC----------H
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ----------L  108 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d----------~  108 (305)
                      +-+.+++.|+||++-+|..++..|+..|.  +|++.|.+.   ++..+.++....  .++..+. ..+|          .
T Consensus        15 sL~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~   90 (272)
T d1g0oa_          15 SLEGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEA   90 (272)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHH
Confidence            33445899999999999999999999998  999999875   122222333221  1222211 1112          2


Q ss_pred             HHHhCCCCEEEEcCCCCCCCC---C---chhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          109 EDALTGMDIVIIPAGVPRKPG---M---TRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g---~---~r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                      .+.+..-|++|..+|......   .   +..+.+..|+.-...+.+.+..+- ..+-+++++
T Consensus        91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence            234567899999998643221   1   123345556665555555555554 344444443

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.31  E-value=0.0096  Score=51.39  Aligned_cols=111  Identities=21%  Similarity=0.251  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEe-cCCC----------HHHH
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFL-GQQQ----------LEDA  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~t~d----------~~~a  111 (305)
                      +.+.+.|+||++-+|..+|..|+..|.  +|++.|+++  +.....++..     ++..+. .-++          ..+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~~~   76 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDHGD-----NVLGIVGDVRSLEDQKQAASRCVAR   76 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----CeeEEecccccHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  999999975  2222222221     111110 0011          1234


Q ss_pred             hCCCCEEEEcCCCCCCCC-------Cc----hhhHHHhh----HHHHHHHHHHHHHhCCCcEEEEec
Q 021932          112 LTGMDIVIIPAGVPRKPG-------MT----RDDLFNIN----AGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~g-------~~----r~d~~~~N----~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +...|++|.+||......       +.    ....+..|    +...+.+.+.+.+.. ..+|++.|
T Consensus        77 ~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S  142 (276)
T d1bdba_          77 FGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTIS  142 (276)
T ss_dssp             HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECC
T ss_pred             hCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeee
Confidence            568999999998642211       11    12234444    345667777776653 44555554

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0055  Score=52.06  Aligned_cols=112  Identities=16%  Similarity=0.187  Sum_probs=65.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEE-EecCC-------CHHHHhCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRG-FLGQQ-------QLEDALTGMD  116 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~-~~~t~-------d~~~al~~aD  116 (305)
                      +.+.|+||++-+|..+|..|++.|.  .|++.|+++  ++..+.++....  ..+.. .....       ...+.+..-|
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~~~--~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGANG--KGLMLNVTDPASIESVLEKIRAEFGEVD   80 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGE--EEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCCCC--cEEEEEecCHHHhhhhhhhhhcccCCcc
Confidence            4677889999999999999999998  999999976  222222232110  00110 00000       1123345899


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 021932          117 IVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       117 iVIi~ag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ++|..||......   .+   ....+..|+    ...+.+++.+.+.. .+.||++|
T Consensus        81 ilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~is  136 (243)
T d1q7ba_          81 ILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR-HGRIITIG  136 (243)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             eehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcC-CCEeeeec
Confidence            9999998653322   11   223344454    45666677766654 46666665

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.28  E-value=0.025  Score=48.15  Aligned_cols=113  Identities=14%  Similarity=0.087  Sum_probs=66.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC---H-------HHHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ---L-------EDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d---~-------~~al  112 (305)
                      .+.+.|+||++-+|..+|..|+..|.  .|++.|+++  ++....++....  .+...+.. -+|   .       .+.+
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            44788999999999999999999998  999999976  222333343321  22222111 111   1       1223


Q ss_pred             C-CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEec
Q 021932          113 T-GMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ~-~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      . .-|++|.+||......   .+   ....+..|+.    +.+...+.+.+. ..+.|++++
T Consensus        84 ~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~is  144 (259)
T d2ae2a_          84 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFIS  144 (259)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEEC
T ss_pred             CCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh-ccccccccc
Confidence            3 4799999999653322   12   2234555654    445555555544 355565554

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.26  E-value=0.02  Score=50.06  Aligned_cols=117  Identities=16%  Similarity=0.224  Sum_probs=68.6

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C------chhh----hhhhcccCCceEEE-EecCCCH-
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T------PGVT----ADISHMDTNAVVRG-FLGQQQL-  108 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~------~g~~----~DL~~~~~~~~v~~-~~~t~d~-  108 (305)
                      |+-+.+.+.|+||++-+|..+|..|+..|.  .|++.|++. .      ...+    .++....  ..... .....+. 
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~   78 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG--GKAVANYDSVEAGE   78 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT--CEEEEECCCGGGHH
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcc--cccccccchHHHHH
Confidence            344445788889999999999999999998  999999864 1      1111    1222111  11111 1111121 


Q ss_pred             ------HHHhCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 021932          109 ------EDALTGMDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       109 ------~~al~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                            .+.+..-|++|..||......   .+   ....+..|+    ...+.+++.+.+.. .+.||+++
T Consensus        79 ~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~is  148 (302)
T d1gz6a_          79 KLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTA  148 (302)
T ss_dssp             HHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             HHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeC
Confidence                  133457999999999754221   12   223444454    46677777777765 45555554

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.25  E-value=0.0025  Score=53.39  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..||+|||| |..|.++|..|.+.|+  +++++|.+.
T Consensus         4 ~~kV~IiGa-G~aGl~~A~~L~~~G~--~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERSP   37 (265)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            459999999 9999999999999999  999999753

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.25  E-value=0.0055  Score=52.20  Aligned_cols=113  Identities=14%  Similarity=0.200  Sum_probs=66.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEE-EecCC-------CHHHHhCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRG-FLGQQ-------QLEDALTGMD  116 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~-~~~t~-------d~~~al~~aD  116 (305)
                      +.+.|+||++-+|..+|..|++.|.  +|++.|+++  ++..+.++.....  .+.. +....       ...+.+...|
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~Dv~~~~~v~~~~~~~~~~~g~id   82 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADAAR--YVHLDVTQPAQWKAAVDTAVTAFGGLH   82 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGGEE--EEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCcce--EEEeecCCHHHHHHHHHHHHHHhCCCe
Confidence            4788889999999999999999998  999999976  2333333432110  0100 00000       1123346799


Q ss_pred             EEEEcCCCCCCC---CCc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecC
Q 021932          117 IVIIPAGVPRKP---GMT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       117 iVIi~ag~~~~~---g~~---r~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ++|.+||.....   ..+   ..+.+..|+    ...+...+.+.+.. .+.||+++.
T Consensus        83 ilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~isS  139 (244)
T d1nffa_          83 VLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISS  139 (244)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             EEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcC-cceEEeccc
Confidence            999999864321   122   223444454    34555666666554 466666654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.003  Score=48.04  Aligned_cols=56  Identities=13%  Similarity=0.164  Sum_probs=39.8

Q ss_pred             CccccccccccccccccCCCCCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           22 PTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      |++++.++. .|.+-. -......|.|++|||| |++|.-+|..|...|.  +|.+++..+
T Consensus         1 Pgi~~d~~~-v~ts~~-~~~l~~~p~~~vIiG~-G~ig~E~A~~l~~lG~--~Vtii~~~~   56 (122)
T d1v59a2           1 PGIEIDEEK-IVSSTG-ALSLKEIPKRLTIIGG-GIIGLEMGSVYSRLGS--KVTVVEFQP   56 (122)
T ss_dssp             TTCCCCSSS-EECHHH-HTTCSSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCccCCCE-EEehHH-hhCcccCCCeEEEECC-CchHHHHHHHHHhhCc--ceeEEEecc
Confidence            555655555 343210 0112334579999999 9999999999999988  999999865

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.0043  Score=50.60  Aligned_cols=34  Identities=26%  Similarity=0.353  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ++||+|||| |..|...|..|+++|+  ++.|+|...
T Consensus        43 ~k~V~IIGa-GPAGL~AA~~la~~G~--~Vtl~E~~~   76 (179)
T d1ps9a3          43 KKNLAVVGA-GPAGLAFAINAAARGH--QVTLFDAHS   76 (179)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CcEEEEECc-cHHHHHHHHHHHhhcc--ceEEEeccC
Confidence            459999999 9999999999999999  999999875

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.18  E-value=0.0032  Score=52.07  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=30.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +||+|||| |..|.+.|+.|.+.|+  +|.++|.+.
T Consensus         7 ~kVvVIGa-GiaGl~~A~~L~~~G~--~V~vier~~   39 (268)
T d1c0pa1           7 KRVVVLGS-GVIGLSSALILARKGY--SVHILARDL   39 (268)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CcEEEECc-cHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            49999999 9999999999999999  999999854

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.028  Score=43.70  Aligned_cols=100  Identities=8%  Similarity=-0.040  Sum_probs=60.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecC-CCH----HHHhCCCCEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQ-QQL----EDALTGMDIV  118 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t-~d~----~~al~~aDiV  118 (305)
                      +-+|.|+|. |.+|..++..|...+.  +++++|.++.  .....++...    .+..+.+. +|.    +..+.+||.|
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~~----~~~vi~Gd~~d~~~L~~a~i~~a~~v   75 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGD----NADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCT----TCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhcC----CcEEEEccCcchHHHHHhccccCCEE
Confidence            347999999 9999999999999988  8999998762  2222222221    11111121 221    2234789999


Q ss_pred             EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe-cCCCC
Q 021932          119 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVN  167 (305)
Q Consensus       119 Ii~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~-tNPvd  167 (305)
                      |++.+.      +     ..|+.+    +..+++.+|+..++.- .+|-+
T Consensus        76 i~~~~~------d-----~~n~~~----~~~~r~~~~~~~iia~~~~~~~  110 (153)
T d1id1a_          76 LALSDN------D-----ADNAFV----VLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             EECSSC------H-----HHHHHH----HHHHHHHTSSSCEEEECSSGGG
T ss_pred             EEcccc------H-----HHHHHH----HHHHHHhCCCCceEEEEcCHHH
Confidence            998531      1     234433    3455677887654444 56654

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.14  E-value=0.0035  Score=50.34  Aligned_cols=66  Identities=17%  Similarity=0.380  Sum_probs=44.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +++||+|+|. |.+|+.++..+...+-+.-+.++|.++....         ......   ..++++...+.|+|+++.+
T Consensus         2 ~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---------~~~~~~---~~~~~~~~~~~D~Vvi~tp   67 (170)
T d1f06a1           2 TNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---------KTPVFD---VADVDKHADDVDVLFLCMG   67 (170)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---------SSCEEE---GGGGGGTTTTCSEEEECSC
T ss_pred             CcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccccccc---------cccccc---chhhhhhccccceEEEeCC
Confidence            4579999998 9999999988887655444456676542110         112222   2355667789999999864

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.14  E-value=0.0027  Score=54.08  Aligned_cols=37  Identities=19%  Similarity=0.204  Sum_probs=32.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..+++||+|||| |..|.+.|+.|.+.|+  +|+++|..+
T Consensus        27 ~~~pkkV~IIGa-G~aGLsaA~~L~~~G~--~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGA-GMAGLSAAYVLAGAGH--QVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECC-BHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            345669999999 9999999999999998  999999765

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.005  Score=49.45  Aligned_cols=74  Identities=19%  Similarity=0.192  Sum_probs=43.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccC--CceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--NAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~--~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      .++||+|+|++|.+|+.++..+.+.+-+.=+..+|.....-...|+.....  ...+..   +.++++.++++|+||=.
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~---~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCcee---eccHHHHhcccceEEEe
Confidence            357999999999999999998887653322245565431111122222211  122222   23556778999987754

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.09  E-value=0.006  Score=51.99  Aligned_cols=113  Identities=17%  Similarity=0.180  Sum_probs=66.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhhhhcccCCce------EEEEecCCCHHHHhCCCCEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAV------VRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~DL~~~~~~~~------v~~~~~t~d~~~al~~aDiVI  119 (305)
                      +.+.|+||++-+|..+|..|++.|.  .|++.|+++.. ..+.++.......+      ++..  -....+.+..-|++|
T Consensus         6 K~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~--~~~~~~~~G~iDiLV   81 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRF--VEEAAYALGRVDVLV   81 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHH--HHHHHHHHSCCCEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHH--HHHHHHhcCCCCeEE
Confidence            4788999999999999999999998  99999997621 11111111000000      0000  011234456899999


Q ss_pred             EcCCCCCCC---CCch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecC
Q 021932          120 IPAGVPRKP---GMTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       120 i~ag~~~~~---g~~r---~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ..||.....   ..+.   ...+..|+    .+.+...+.+.+.. .+.||+++.
T Consensus        82 nnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Ii~isS  135 (248)
T d2d1ya1          82 NNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG-GGAIVNVAS  135 (248)
T ss_dssp             ECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECC
T ss_pred             EeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccc-ccccccccc
Confidence            999864321   1122   22344454    45666666666544 566666653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.031  Score=48.65  Aligned_cols=120  Identities=13%  Similarity=0.058  Sum_probs=70.8

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhhhhhhccc---CCceEEEEec-CCCH-------
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD---TNAVVRGFLG-QQQL-------  108 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~---~~~~v~~~~~-t~d~-------  108 (305)
                      +.-+.+.+.|+||++-+|..+|..|+..|.  .|++.|+++  ++..+.+|....   ...++..+.. -+|.       
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~   85 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV   85 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHH
Confidence            334456899999999999999999999998  999999976  333344444221   1223333211 1121       


Q ss_pred             ---HHHhCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCcEEEEecC
Q 021932          109 ---EDALTGMDIVIIPAGVPRKPG---MT---RDDLFNINAG----IVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       109 ---~~al~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                         .+.+..-|++|.+||......   .+   ....+..|+.    +.+.+++.+.+... +.+++++.
T Consensus        86 ~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~Ii~~ss  153 (297)
T d1yxma1          86 KSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG-GSIVNIIV  153 (297)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECC
T ss_pred             HHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccc-cccccccc
Confidence               123457899999998643221   11   2334555644    45556666555544 44444543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.06  E-value=0.05  Score=46.19  Aligned_cols=115  Identities=14%  Similarity=0.071  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEE-ecCCCH----------HHH
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF-LGQQQL----------EDA  111 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~-~~t~d~----------~~a  111 (305)
                      +.+++.|+||++-+|..+|..|++.|.  +|++.|+++  +...+.++....  ..+..+ ..-++.          .+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  999999986  222223333322  112211 111121          122


Q ss_pred             h-CCCCEEEEcCCCCCCCC---Cc---hhhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          112 L-TGMDIVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       112 l-~~aDiVIi~ag~~~~~g---~~---r~d~~~~N----~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      + ..-|++|.++|......   .+   ....+..|    ....+.+.+.+.+.. .+.+++++-
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~-~g~ii~isS  143 (258)
T d1ae1a_          81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSS  143 (258)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECC
T ss_pred             hCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccc-ccccccccc
Confidence            2 24789999998654321   12   22233444    345556666666554 455555553

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.06  E-value=0.009  Score=51.10  Aligned_cols=111  Identities=18%  Similarity=0.144  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC----------HHHHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ----------LEDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d----------~~~al  112 (305)
                      .+.+.|+||++-+|..+|..|+..|.  +|++.|+++  +.....++...     +..+.. -++          ..+.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGDA-----ARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGGG-----EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCc-----eEEEEcccCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  999999976  22222333211     111100 011          12334


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecC
Q 021932          113 TGMDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      ...|++|.+||......   .+   ..+.+..|+    ...+.+++.+.+.. .+.||+++.
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~-~G~II~isS  138 (254)
T d1hdca_          78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISS  138 (254)
T ss_dssp             SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC-CCeeccccc
Confidence            68999999998743221   11   223445554    45566666666654 566666653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.99  E-value=0.024  Score=48.32  Aligned_cols=113  Identities=16%  Similarity=0.098  Sum_probs=65.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCCH----------HHHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL----------EDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d~----------~~al  112 (305)
                      .+.+.|+||++-+|..+|..|+..|.  .|+++|+++  +...+.++....  .++..+.. -++.          .+.+
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            45888999999999999999999998  999999986  233333343321  12222111 1111          1223


Q ss_pred             C-CCCEEEEcCCCCCCC---CCch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 021932          113 T-GMDIVIIPAGVPRKP---GMTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ~-~aDiVIi~ag~~~~~---g~~r---~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      . .-|++|.+||.....   ..+.   ...+..|+    .+.+.+.+.+++.. .+.|++++
T Consensus        84 ~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~is  144 (259)
T d1xq1a_          84 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMS  144 (259)
T ss_dssp             TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC
T ss_pred             CCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-cccccccc
Confidence            2 479999999864321   1222   23344454    45566666666654 45555554

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=95.98  E-value=0.051  Score=45.62  Aligned_cols=152  Identities=17%  Similarity=0.116  Sum_probs=86.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CC----------CHHHHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQ----------QLEDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~----------d~~~al  112 (305)
                      .+++.|+||++.+|..+|..|+..|.  +|++.|+++  +.....++..     ++..+.. -.          ...+.+
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALEA-----EAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCCS-----SEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----ceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            34788999999999999999999998  999999876  2222222221     1111110 01          122334


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHhCCCCC
Q 021932          113 TGMDIVIIPAGVPRKP---GMT---RDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDP  185 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~  185 (305)
                      ..-|++|..||.....   ..+   ..+.+..|+.....+.+...++. ....++++|.-...-.+-  ..         
T Consensus        78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~--~~---------  146 (241)
T d2a4ka1          78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFG--LA---------  146 (241)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHH--HH---------
T ss_pred             CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccC--cc---------
Confidence            6799999998864321   112   23456678777777777777666 344555555443322111  00         


Q ss_pred             CcEEEeeehhhHHHHHHHHHHhCCCCcceeEEEE
Q 021932          186 KRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (305)
Q Consensus       186 ~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~vl  219 (305)
                        ..+.+----..|-+.+|+.++  +..|++-.+
T Consensus       147 --~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I  176 (241)
T d2a4ka1         147 --HYAAGKLGVVGLARTLALELA--RKGVRVNVL  176 (241)
T ss_dssp             --HHHHCSSHHHHHHHHHHHHHT--TTTCEEEEE
T ss_pred             --ccchhhHHHHHHHHHHHHHHh--HhCCEEeee
Confidence              112221112346778899986  444554433

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0045  Score=52.95  Aligned_cols=111  Identities=18%  Similarity=0.158  Sum_probs=65.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-Cce------EEEEecCCCHHHHhCCCCE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAV------VRGFLGQQQLEDALTGMDI  117 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~------v~~~~~t~d~~~al~~aDi  117 (305)
                      +.+.|+||++-+|..+|..|+..|.  +|++.|+++  ++....++..... ..+      ++..  -....+.+..-|+
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~--~~~~~~~~g~iDi   82 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTL--VSETIRRFGRLDC   82 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHH--HHHHHHHHSCCCE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHH--HHHHHHhcCCCCE
Confidence            4788999999999999999999998  999999976  2222222222110 000      0000  0012234467999


Q ss_pred             EEEcCCCCCCCC----Cch---hhHHHhh----HHHHHHHHHHHHHhCCCcEEEEec
Q 021932          118 VIIPAGVPRKPG----MTR---DDLFNIN----AGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       118 VIi~ag~~~~~g----~~r---~d~~~~N----~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      +|..||.....+    .+.   ...+..|    ..+.+...+.+++.  .+-|++++
T Consensus        83 lVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~is  137 (250)
T d1ydea1          83 VVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINIS  137 (250)
T ss_dssp             EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEC
T ss_pred             EEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCcccc
Confidence            999998643222    122   2334444    34567777777664  35666665

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.95  E-value=0.027  Score=47.73  Aligned_cols=78  Identities=14%  Similarity=0.103  Sum_probs=50.8

Q ss_pred             CCEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEecC---------CCHHHHhC
Q 021932           46 GFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQ---------QQLEDALT  113 (305)
Q Consensus        46 ~~KI~IIGaaG--~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t---------~d~~~al~  113 (305)
                      .+++.|+||+|  -+|..+|..|+..|.  +|++.|+++ +...+.++........+.....+         ....+.+.
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   82 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   82 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcC
Confidence            45899999877  499999999999999  999999987 33334444432211111111101         12234457


Q ss_pred             CCCEEEEcCCCC
Q 021932          114 GMDIVIIPAGVP  125 (305)
Q Consensus       114 ~aDiVIi~ag~~  125 (305)
                      ..|++|.++|..
T Consensus        83 ~id~lV~nag~~   94 (274)
T d2pd4a1          83 SLDFIVHSVAFA   94 (274)
T ss_dssp             CEEEEEECCCCC
T ss_pred             CCCeEEeecccc
Confidence            899999998864

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.92  E-value=0.027  Score=47.97  Aligned_cols=113  Identities=18%  Similarity=0.234  Sum_probs=65.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC-CceEEEEecC-CC---H-------HHHhC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQ-QQ---L-------EDALT  113 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~-~~~v~~~~~t-~d---~-------~~al~  113 (305)
                      .+.|+||++-+|..+|..|+..|.  +|++.|+++  +...+.++..... ..++..+... ++   .       .+.+.
T Consensus         7 valVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   84 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFG   84 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            567779999999999999999998  999999976  3333444543321 1223322111 11   1       12235


Q ss_pred             CCCEEEEcCCCCCCCC-------Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 021932          114 GMDIVIIPAGVPRKPG-------MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g-------~~---r~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ..|++|.+||......       ++   ....+..|+    ...+.+.+.+++. ..++|++.|
T Consensus        85 ~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (264)
T d1spxa_          85 KLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISS  147 (264)
T ss_dssp             CCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             CCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCcceeeee
Confidence            7999999998642111       12   122344454    3556667766654 345555554

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.92  E-value=0.015  Score=46.58  Aligned_cols=71  Identities=17%  Similarity=0.231  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +.++|.|+|+ |-++.++++.|.+.+  .+|.+++++..  +..+..+...   ..+....  .+ ...+.++|+||.|.
T Consensus        17 ~~k~vlIlGa-GGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~--~~-~~~~~~~diiIN~t   87 (171)
T d1p77a1          17 PNQHVLILGA-GGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQPY---GNIQAVS--MD-SIPLQTYDLVINAT   87 (171)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGGG---SCEEEEE--GG-GCCCSCCSEEEECC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhhc---cccchhh--hc-cccccccceeeecc
Confidence            3458999998 999999999998755  49999998762  2223333321   2333322  12 23478999999986


Q ss_pred             CC
Q 021932          123 GV  124 (305)
Q Consensus       123 g~  124 (305)
                      ..
T Consensus        88 p~   89 (171)
T d1p77a1          88 SA   89 (171)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.91  E-value=0.006  Score=52.15  Aligned_cols=114  Identities=13%  Similarity=0.128  Sum_probs=66.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccC--CceEEEEec----CCCHHHHhCCCCEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--NAVVRGFLG----QQQLEDALTGMDIV  118 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~----t~d~~~al~~aDiV  118 (305)
                      +.+.|+||++-+|..+|..|+..|.  .|++.|+++  ++..+.++.....  ..++.....    -....+.+..-|++
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil   84 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeE
Confidence            4788889999999999999999998  899999976  2222333322110  000000000    00122344688999


Q ss_pred             EEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecC
Q 021932          119 IIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       119 Ii~ag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      |.+||......   .+   ....+..|+    ...+...+.+++.  .+.|++++.
T Consensus        85 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~G~Iv~isS  138 (253)
T d1hxha_          85 VNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET--GGSIINMAS  138 (253)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--CEEEEEECC
T ss_pred             EecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CCceecccc
Confidence            99999753221   12   223344453    4566666666543  466777754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.82  E-value=0.08  Score=41.40  Aligned_cols=97  Identities=13%  Similarity=0.054  Sum_probs=57.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHH---HHh-----CCCCE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLE---DAL-----TGMDI  117 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~---~al-----~~aDi  117 (305)
                      .+|.|+|+ |.+|...++.+...|.  +++.+|.++. ...+.++..   ...+.......+..   +.+     .++|+
T Consensus        28 ~~vlV~G~-G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~~ga---~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~  101 (170)
T d1e3ja2          28 TTVLVIGA-GPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNCGA---DVTLVVDPAKEEESSIIERIRSAIGDLPNV  101 (170)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTC---SEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred             CEEEEEcc-cccchhhHhhHhhhcc--cccccchHHHHHHHHHHcCC---cEEEeccccccccchhhhhhhcccccCCce
Confidence            38999997 9999999999988886  8999998762 222333321   11111000011111   112     46999


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       118 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                      ||.++|.+               ..+.+.   ++-..|.+.+++++.|.+
T Consensus       102 vid~~g~~---------------~~~~~a---~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2         102 TIDCSGNE---------------KCITIG---INITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             EEECSCCH---------------HHHHHH---HHHSCTTCEEEECSCCSS
T ss_pred             eeecCCCh---------------HHHHHH---HHHHhcCCceEEEecCCC
Confidence            99998632               112222   233358899988876644

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.022  Score=44.82  Aligned_cols=68  Identities=15%  Similarity=0.227  Sum_probs=42.9

Q ss_pred             CCEEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~-la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ++||+|||+ |.+|.. ....+...+-+.-+.++|.++.....  +.... .  +..   .+++++.+++.|+|+++.
T Consensus         1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~--~~~~~-~--~~~---~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           1 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALP--ICESW-R--IPY---ADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHH--HHHHH-T--CCB---CSSHHHHHTTCSEEEECS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhh--hhhcc-c--ccc---cccchhhhhhcccccccc
Confidence            369999998 999975 56667665544445688887632221  11111 1  111   235667779999999985

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=95.78  E-value=0.016  Score=51.90  Aligned_cols=73  Identities=19%  Similarity=0.320  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~-~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      ....++|||+ |..+...+..+.. .+ +.+|.++|+++  ....+.++.... ...+..   ..+.++++++||+|+.+
T Consensus       127 da~~l~iiG~-G~QA~~~~~a~~~v~~-i~~V~v~~r~~~~~~~~~~~l~~~~-g~~v~~---~~s~~eav~~ADIi~t~  200 (340)
T d1x7da_         127 NARKMALIGN-GAQSEFQALAFHKHLG-IEEIVAYDTDPLATAKLIANLKEYS-GLTIRR---ASSVAEAVKGVDIITTV  200 (340)
T ss_dssp             TCCEEEEECC-STTHHHHHHHHHHHSC-CCEEEEECSSHHHHHHHHHHHTTCT-TCEEEE---CSSHHHHHTTCSEEEEC
T ss_pred             CCceEEEEcc-cHHHHHHHHHHhhhcc-eeeeEEEecChHHHHHHHHhhhhcc-CCCcee---cCCHHHHHhcCCceeec
Confidence            3458999998 9998877765544 45 57999999986  233444554321 234443   35789999999999885


Q ss_pred             CC
Q 021932          122 AG  123 (305)
Q Consensus       122 ag  123 (305)
                      ..
T Consensus       201 Ta  202 (340)
T d1x7da_         201 TA  202 (340)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.78  E-value=0.0031  Score=52.49  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=30.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      |||+|||| |.-|.+.|+.|.+.|+  +|.+++..+
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~--~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            68999999 9999999999999998  899999764

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=95.75  E-value=0.029  Score=44.25  Aligned_cols=66  Identities=24%  Similarity=0.314  Sum_probs=40.3

Q ss_pred             CCEEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCCc--hhhhhhhcccCCceEEEEecCCCHHHHhC-CCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALT-GMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~-la~~L~~~~~~~el~L~D~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~~al~-~aDiVIi~  121 (305)
                      .+||+|||+ |.+|.. ....+...+.. +++++|.++..  ..+.++..    +  ..   .+|+++.++ +.|+|+++
T Consensus         1 tirvgiiG~-G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~----~--~~---~~~~~~ll~~~iD~V~I~   69 (167)
T d1xeaa1           1 SLKIAMIGL-GDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRV----S--AT---CTDYRDVLQYGVDAVMIH   69 (167)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTC----C--CC---CSSTTGGGGGCCSEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHhccc----c--cc---cccHHHhcccccceeccc
Confidence            369999998 999976 45566555433 88899987522  12222211    1  11   135555553 78999997


Q ss_pred             C
Q 021932          122 A  122 (305)
Q Consensus       122 a  122 (305)
                      .
T Consensus        70 t   70 (167)
T d1xeaa1          70 A   70 (167)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.021  Score=45.12  Aligned_cols=130  Identities=15%  Similarity=0.233  Sum_probs=70.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ..+|.|+|+ |.+|...++.+...|.  +++.+|.++.+ ..+.++.   . ..+.............++.|++|.+.|.
T Consensus        31 G~~VlI~Ga-G~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~lG---a-d~~i~~~~~~~~~~~~~~~D~vid~~g~  103 (168)
T d1uufa2          31 GKKVGVVGI-GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKALG---A-DEVVNSRNADEMAAHLKSFDFILNTVAA  103 (168)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHT---C-SEEEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred             CCEEEEecc-chHHHHHHHHhhcccc--cchhhccchhHHHHHhccC---C-cEEEECchhhHHHHhcCCCceeeeeeec
Confidence            358999998 9999999999988887  66778876521 2222222   1 1111111111122344689999999875


Q ss_pred             CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHH-HHHHHHHhCCCCCCcEEEee---ehhhHHHH
Q 021932          125 PRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPI-AAEVFKKVGTYDPKRLLGVT---MLDVVRAN  200 (305)
Q Consensus       125 ~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~-~~~~~~~~s~~p~~kviG~t---~Lds~R~~  200 (305)
                      +..               +.   ..+.-..|.+.++.++-|.+..... ....+     +...+++|..   .-|..++-
T Consensus       104 ~~~---------------~~---~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~-----~k~~~i~Gs~~~~~~d~~e~l  160 (168)
T d1uufa2         104 PHN---------------LD---DFTTLLKRDGTMTLVGAPATPHKSPEVFNLI-----MKRRAIAGSMIGGIPETQEML  160 (168)
T ss_dssp             CCC---------------HH---HHHTTEEEEEEEEECCCC-------CHHHHH-----TTTCEEEECCSCCHHHHHHHH
T ss_pred             chh---------------HH---HHHHHHhcCCEEEEeccCCCCcccccHHHHH-----HCCcEEEEEeecCHHHHHHHH
Confidence            411               11   1223345788888887654432211 11111     3346788982   34554555


Q ss_pred             HHHHH
Q 021932          201 TFVAE  205 (305)
Q Consensus       201 ~~la~  205 (305)
                      .++++
T Consensus       161 ~l~a~  165 (168)
T d1uufa2         161 DFCAE  165 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.05  Score=46.27  Aligned_cols=113  Identities=16%  Similarity=0.172  Sum_probs=65.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecC-CC----------HHHHh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ-QQ----------LEDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t-~d----------~~~al  112 (305)
                      .+++.|+||++-+|..+|..|++.|.  +|++.|+++  ++....++.... ...+..+... .+          ..+.+
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhh-cccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            35899999999999999999999998  999999986  222233333221 1122211111 11          12234


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 021932          113 TGMDIVIIPAGVPRKP---GMTR---DDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~---g~~r---~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ...|+++..+|.....   ..+.   ...+..|.    ...+.+.+.+++.  ++.+++++
T Consensus        91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~is  149 (269)
T d1xu9a_          91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVS  149 (269)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEE
T ss_pred             CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEec
Confidence            5789999988754221   1121   22344443    4566666766643  35555554

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.64  E-value=0.0052  Score=50.89  Aligned_cols=33  Identities=33%  Similarity=0.478  Sum_probs=30.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +||+|||| |.-|.+.|+.|++.|+  +|.++|..+
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~--~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGL--NVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            49999999 9999999999999999  999999754

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.0065  Score=49.27  Aligned_cols=79  Identities=20%  Similarity=0.230  Sum_probs=52.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC----chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEE
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~----~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      .+.++|+|||-+.-||..+|.+|++.+-  .+..+|.+..    .+....+.+.. ...+.... .+++++....||+||
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~ga--TVt~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~lk~~~~~aDIvI  102 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLNKHH-VEDLGEYS-EDLLKKCSLDSDVVI  102 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCCCCE-EEEEEECC-HHHHHHHHHHCSEEE
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCC--EEEEeccccccccccccceeeeeec-cccccccc-hhHHhhccccCCEEE
Confidence            3446999999977889999999998886  8888887541    12223333322 12222221 124677788999999


Q ss_pred             EcCCCCC
Q 021932          120 IPAGVPR  126 (305)
Q Consensus       120 i~ag~~~  126 (305)
                      ..+|.|.
T Consensus       103 savG~p~  109 (171)
T d1edza1         103 TGVPSEN  109 (171)
T ss_dssp             ECCCCTT
T ss_pred             EccCCCc
Confidence            9998764

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.059  Score=45.05  Aligned_cols=157  Identities=14%  Similarity=0.167  Sum_probs=81.0

Q ss_pred             CCEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCC----------HHHHh
Q 021932           46 GFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQ----------LEDAL  112 (305)
Q Consensus        46 ~~KI~IIGaaG--~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d----------~~~al  112 (305)
                      .++|.|+||+|  -+|..+|..|++.|.  +|++.|+++ ....+.++............. ..+          ..+.+
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   81 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCD-VAEDASIDTMFAELGKVW   81 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECC-TTCHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHhhcCCcceeecc-cchHHHHHHHHHHhhhcc
Confidence            45899999977  488999999999998  999999986 333333333321111111111 111          12223


Q ss_pred             CCCCEEEEcCCCCCCCCC-------chhh----HHHhhHHHHHHHHHHHHHhC-CCcEEEEecCCCCccHHHHHHHHHHh
Q 021932          113 TGMDIVIIPAGVPRKPGM-------TRDD----LFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV  180 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~g~-------~r~d----~~~~N~~i~~~i~~~I~~~~-p~aiviv~tNPvd~lt~~~~~~~~~~  180 (305)
                      ...|++|..++.......       ...+    .+..|......+.+.+..+- +...++++|......           
T Consensus        82 ~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~-----------  150 (258)
T d1qsga_          82 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER-----------  150 (258)
T ss_dssp             SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred             cccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc-----------
Confidence            456788888765321111       0111    22334455555555555544 445566655332110           


Q ss_pred             CCCCCCcEEEeeehhhHHHHHHHHHHhCCCCcceeEEEE
Q 021932          181 GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVV  219 (305)
Q Consensus       181 s~~p~~kviG~t~Lds~R~~~~la~~l~v~~~~V~~~vl  219 (305)
                       +.|..-..+.+----..+.+.+|..++  ++.|++-.+
T Consensus       151 -~~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIrVN~I  186 (258)
T d1qsga_         151 -AIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAI  186 (258)
T ss_dssp             -BCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             -CCCCcHHHHHHHHHHHHHHHHHHHHhC--ccCceeecc
Confidence             111111111211112346677888886  667776655

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=95.61  E-value=0.00076  Score=53.04  Aligned_cols=62  Identities=10%  Similarity=0.048  Sum_probs=35.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      |++||+ |.||++++..|...+.  ...+++++.  ..+.+|.+... ..   .   .+.+++++.+|+||++.
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~--~~~v~~R~~--~~~~~l~~~~~-~~---~---~~~~~~~~~~DiVil~v   63 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYE--IGYILSRSI--DRARNLAEVYG-GK---A---ATLEKHPELNGVVFVIV   63 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHHHHTC-CC---C---CSSCCCCC---CEEECS
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCC--EEEEEeCCh--hhhcchhhccc-cc---c---cchhhhhccCcEEEEec
Confidence            689998 9999999987755443  234677754  22233333221 10   0   12357789999999986

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.015  Score=47.01  Aligned_cols=77  Identities=25%  Similarity=0.290  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhh----hhcccCCceEEEEec--CCCHHHHhCCCCE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTAD----ISHMDTNAVVRGFLG--QQQLEDALTGMDI  117 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~D----L~~~~~~~~v~~~~~--t~d~~~al~~aDi  117 (305)
                      +.++|.|+|+ |-+|.++++.|...+. .+|++++++.. ...+.+    +... ....+.....  ..++.+.+.++|+
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~-~~i~i~nR~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          17 KGKTMVLLGA-GGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNEN-TDCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHH-SSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHhhcCC-ceEeeeccchHHHHHHHHHHHHHHhh-cCcceEeeecccccchhhhhcccce
Confidence            3459999999 9999999999998875 59999999762 122222    2221 1222222211  1234566789999


Q ss_pred             EEEcCCC
Q 021932          118 VIIPAGV  124 (305)
Q Consensus       118 VIi~ag~  124 (305)
                      ||.+...
T Consensus        94 iIN~Tp~  100 (182)
T d1vi2a1          94 LTNGTKV  100 (182)
T ss_dssp             EEECSST
T ss_pred             eccccCC
Confidence            9998643

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.53  E-value=0.033  Score=46.91  Aligned_cols=114  Identities=18%  Similarity=0.217  Sum_probs=67.3

Q ss_pred             E-EEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCC----------H
Q 021932           48 K-VAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQ----------L  108 (305)
Q Consensus        48 K-I~IIGaaG~VGs~la~~L~~~~~-----~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d----------~  108 (305)
                      + |.|+||++-+|..+|..|++.|.     ...++++|+++  ++..+.++....  .+...+.. -+|          .
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHH
Confidence            6 45789999999999999998875     13488999876  233334444321  22222211 112          1


Q ss_pred             HHHhCCCCEEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEecC
Q 021932          109 EDALTGMDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       109 ~~al~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      .+.+...|++|..||......   .+   ....+..|+    .+.+.+.+.+++.. .+.+++++.
T Consensus        80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS  144 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH-SGHIFFITS  144 (240)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcC-CCceEEEec
Confidence            233457999999998753221   11   223444454    46677777777654 466666653

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.50  E-value=0.046  Score=46.16  Aligned_cols=110  Identities=9%  Similarity=0.004  Sum_probs=64.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCC-------HHHHhCCCCEEE
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQ-------LEDALTGMDIVI  119 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d-------~~~al~~aDiVI  119 (305)
                      ...|+||++-+|..+|..|++.|.  .|++.|++.. ..+...+........+..   ..+       ..+.+-.-|++|
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~dv~~---~~~~~~~~~~~~~~~G~iDiLV   76 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYPQLKPMS---EQEPAELIEAVTSAYGQVDVLV   76 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCTTSEECC---CCSHHHHHHHHHHHHSCCCEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhhhCcEEEeccCC---HHHHHHHHHHHHHHcCCCCEEE
Confidence            357999999999999999999998  9999998651 111111111111111111   112       234456899999


Q ss_pred             EcCCCCCCCC----Cchh---hHHHhh----HHHHHHHHHHHHHhCCCcEEEEec
Q 021932          120 IPAGVPRKPG----MTRD---DLFNIN----AGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       120 i~ag~~~~~g----~~r~---d~~~~N----~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                      ..||.....+    .+..   ..+..|    ....+.+++.+.+... +.||++|
T Consensus        77 nNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~-G~IV~is  130 (252)
T d1zmta1          77 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKS-GHIIFIT  130 (252)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEC
T ss_pred             ECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhccccc-ceeeccc
Confidence            9888542221    1222   223334    4567778888877654 5555554

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.49  E-value=0.0051  Score=49.18  Aligned_cols=35  Identities=20%  Similarity=0.273  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.||+|||| |..|...|..|.+.|+- +|.++|...
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~-~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYS-DITIFEKQE   38 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCC-CEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCC-eEEEEEecC
Confidence            359999999 99999999999999982 589999876

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.47  E-value=0.082  Score=44.51  Aligned_cols=115  Identities=18%  Similarity=0.137  Sum_probs=63.3

Q ss_pred             CEEEEE-cCCCchHHHHHHHHHh---CCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEec-CCCH---HHHh----
Q 021932           47 FKVAVL-GAAGGIGQPLAMLMKI---NPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLG-QQQL---EDAL----  112 (305)
Q Consensus        47 ~KI~II-GaaG~VGs~la~~L~~---~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-t~d~---~~al----  112 (305)
                      .||+|| ||++-+|..+|..|++   .|.  .|+++|+++  +...+.+|.......++..+.. -++.   ++.+    
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~   83 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR   83 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            466665 9989999999999985   466  999999876  3333445543322334443321 1222   1111    


Q ss_pred             -------CCCCEEEEcCCCCCC--CC----Cc---hhhHHHhhHHHHHHHHHHHHHh----C-CCcEEEEec
Q 021932          113 -------TGMDIVIIPAGVPRK--PG----MT---RDDLFNINAGIVKTLCEGIAKC----C-PKAIVNLIS  163 (305)
Q Consensus       113 -------~~aDiVIi~ag~~~~--~g----~~---r~d~~~~N~~i~~~i~~~I~~~----~-p~aiviv~t  163 (305)
                             -+-|++|..+|....  .+    .+   ....+..|+.....+.+.+.++    . +.+.|++++
T Consensus        84 ~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~is  155 (259)
T d1oaaa_          84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNIS  155 (259)
T ss_dssp             HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEEC
T ss_pred             HhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccc
Confidence                   134677777775321  11    12   2234566666555555544443    2 245666665

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.07  Score=42.00  Aligned_cols=96  Identities=17%  Similarity=0.164  Sum_probs=57.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHHHh--------CCCCE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDAL--------TGMDI  117 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~al--------~~aDi  117 (305)
                      .+|.|+|+ |.+|...++.+...|. ..|+..|.++. ...+.++.    ...+... ...+..+..        .++|+
T Consensus        28 d~VlI~G~-G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~G----a~~~~~~-~~~~~~~~~~~~~~~~g~g~Dv  100 (171)
T d1pl8a2          28 HKVLVCGA-GPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEIG----ADLVLQI-SKESPQEIARKVEGQLGCKPEV  100 (171)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTT----CSEEEEC-SSCCHHHHHHHHHHHHTSCCSE
T ss_pred             CEEEEECC-CccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHhC----Ccccccc-cccccccccccccccCCCCceE
Confidence            38999998 9999999998888875 48999998762 22222221    1112211 122332222        37899


Q ss_pred             EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          118 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       118 VIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                      ||.+.|.+               ..+....+.   ..|.+.++++..|.+
T Consensus       101 vid~~G~~---------------~~~~~a~~~---~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2         101 TIECTGAE---------------ASIQAGIYA---TRSGGTLVLVGLGSE  132 (171)
T ss_dssp             EEECSCCH---------------HHHHHHHHH---SCTTCEEEECSCCCS
T ss_pred             EEeccCCc---------------hhHHHHHHH---hcCCCEEEEEecCCC
Confidence            99998632               122222222   247888888876543

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0063  Score=53.45  Aligned_cols=107  Identities=22%  Similarity=0.276  Sum_probs=66.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHh----CCC-----CcEEEEEeCCCC--chhhhhhhcc-cCCceEEEEecCCCHHHHhC-
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVNT--PGVTADISHM-DTNAVVRGFLGQQQLEDALT-  113 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~----~~~-----~~el~L~D~~~~--~g~~~DL~~~-~~~~~v~~~~~t~d~~~al~-  113 (305)
                      .||+|.|| |.-|..++..|..    .|+     .+.+.++|.+.+  ++..-++... ..+.+-.......+++++++ 
T Consensus        26 ~kiv~~GA-GsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~  104 (294)
T d1pj3a1          26 HKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI  104 (294)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHH
T ss_pred             cEEEEECc-cHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHh
Confidence            48999999 9999999876553    344     256999998651  2211111111 00111000001235777766 


Q ss_pred             -CCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCc
Q 021932          114 -GMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNS  168 (305)
Q Consensus       114 -~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~  168 (305)
                       +.|++|-+.|.+.-              +.+++++.|.+.+++.+|+-.|||..-
T Consensus       105 ~kptvliG~S~~~g~--------------ft~evi~~Ma~~~~~PIIFaLSNPt~~  146 (294)
T d1pj3a1         105 LKPSTIIGVAGAGRL--------------FTPDVIRAMASINERPVIFALSNPTAQ  146 (294)
T ss_dssp             HCCSEEEECCCSSCC--------------SCHHHHHHHHHHCSSCEEEECCSSGGG
T ss_pred             cCCceEEEecCCCCc--------------CCHHHHHHHHhcCCCcEEEEccCCCCc
Confidence             88888887664421              135667778889999999999999754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.44  E-value=0.0077  Score=50.27  Aligned_cols=35  Identities=17%  Similarity=0.218  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      |+||+|||| |..|.++|..|.+.|+. .|.+++...
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi~-~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGIG-KVTLLESSS   35 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEEESSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence            579999999 99999999999999953 888999865

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.41  E-value=0.0076  Score=52.99  Aligned_cols=40  Identities=20%  Similarity=0.257  Sum_probs=34.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhhh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA   88 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~   88 (305)
                      .+||+|||| |.-|.++|..|++.|+  +|.++|.+. .-|.+.
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~--~V~viEk~~~iGG~~~   42 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRDHIGGNSY   42 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSSSSSGGGC
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCC--CEEEEECCCCCcCeee
Confidence            469999999 9999999999999988  999999877 445543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.36  E-value=0.02  Score=45.93  Aligned_cols=70  Identities=11%  Similarity=0.242  Sum_probs=43.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCCchhhhhhhcc-cCCceEEEEecCCCHHHHh--CCCCEEEEc
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHM-DTNAVVRGFLGQQQLEDAL--TGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~-L~D~~~~~g~~~DL~~~-~~~~~v~~~~~t~d~~~al--~~aDiVIi~  121 (305)
                      ++||+|||+ |.+|...+..+...+-+ +|+ ++|.++..+.  ++... ......+.+   +|+++.+  .+.|+|+++
T Consensus         1 kiki~iIG~-G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~--~~~~~~~~~~~~~~~---~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           1 QIRIGVMGC-ADIARKVSRAIHLAPNA-TISGVASRSLEKAK--AFATANNYPESTKIH---GSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             CEEEEEESC-CTTHHHHHHHHHHCTTE-EEEEEECSSHHHHH--HHHHHTTCCTTCEEE---SSHHHHHHCTTCCEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHhCCCC-EEEEEEeCCccccc--cchhccccccceeec---CcHHHhhhccccceeeec
Confidence            369999998 99999999888776544 555 6788652221  11111 111223333   3676666  568899997


Q ss_pred             C
Q 021932          122 A  122 (305)
Q Consensus       122 a  122 (305)
                      .
T Consensus        74 t   74 (184)
T d1ydwa1          74 L   74 (184)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.33  E-value=0.047  Score=43.65  Aligned_cols=70  Identities=14%  Similarity=0.171  Sum_probs=41.8

Q ss_pred             CCCEEEEEcCCCchHHH-HHHHHHhCCCCcEEE-EEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC--CCCEEEE
Q 021932           45 PGFKVAVLGAAGGIGQP-LAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~-la~~L~~~~~~~el~-L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiVIi  120 (305)
                      +++||+|||+ |.+|.. .+..+...+...+|+ ++|.++...  ..+.+....+  ..+   +|+++.++  +.|+|++
T Consensus         2 kkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~--~~~~~~~~~~--~~~---~~~~ell~~~~id~v~I   73 (181)
T d1zh8a1           2 RKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHA--EEFAKMVGNP--AVF---DSYEELLESGLVDAVDL   73 (181)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHH--HHHHHHHSSC--EEE---SCHHHHHHSSCCSEEEE
T ss_pred             CCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhh--hhhhcccccc--cee---eeeeccccccccceeec
Confidence            4579999998 999986 466666544322555 778765222  2222211111  222   46777775  5888998


Q ss_pred             cC
Q 021932          121 PA  122 (305)
Q Consensus       121 ~a  122 (305)
                      +.
T Consensus        74 ~t   75 (181)
T d1zh8a1          74 TL   75 (181)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.32  E-value=0.0076  Score=46.97  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=30.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +||+|||| |++|..+|..|...+.-.+|+++|.++
T Consensus         3 krivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            49999999 999999999998877545999999876

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.26  E-value=0.0048  Score=52.63  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=30.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .||+|||| |.+|.++|..|.+.|+  ++.++|..+
T Consensus         3 ~~V~IvGa-Gp~Gl~~A~~L~~~G~--~v~vlE~~~   35 (292)
T d1k0ia1           3 TQVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQT   35 (292)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            48999999 9999999999999999  999999864

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.25  E-value=0.064  Score=38.79  Aligned_cols=72  Identities=18%  Similarity=0.344  Sum_probs=50.4

Q ss_pred             CCCCEEEEEcCCCchH-HHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           44 SPGFKVAVLGAAGGIG-QPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VG-s~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      .+.+||-+||. |-.| +++|..|...|+  +|...|.... ....+|...  ...+..  +. + ++.++++|+||.+.
T Consensus         6 ~~~~~ihfiGi-gG~GMs~LA~~L~~~G~--~VsGSD~~~~-~~~~~L~~~--Gi~v~~--g~-~-~~~i~~~d~vV~S~   75 (96)
T d1p3da1           6 RRVQQIHFIGI-GGAGMSGIAEILLNEGY--QISGSDIADG-VVTQRLAQA--GAKIYI--GH-A-EEHIEGASVVVVSS   75 (96)
T ss_dssp             TTCCEEEEETT-TSTTHHHHHHHHHHHTC--EEEEEESCCS-HHHHHHHHT--TCEEEE--SC-C-GGGGTTCSEEEECT
T ss_pred             hhCCEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEeCCCC-hhhhHHHHC--CCeEEE--CC-c-cccCCCCCEEEECC
Confidence            44569999999 7788 566899999999  9999998652 222344443  223332  22 2 36689999999998


Q ss_pred             CCC
Q 021932          123 GVP  125 (305)
Q Consensus       123 g~~  125 (305)
                      +++
T Consensus        76 AI~   78 (96)
T d1p3da1          76 AIK   78 (96)
T ss_dssp             TSC
T ss_pred             CcC
Confidence            876

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.23  E-value=0.015  Score=43.98  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+..||+|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        28 ~~~k~vvViGg-G~iG~E~A~~l~~~g~--~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGS-GYIGIEAAEAFAKAGK--KVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCCEEEEECC-hHHHHHHHHHhhccce--EEEEEEecC
Confidence            34569999999 9999999999999998  999999865

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.23  E-value=0.04  Score=42.73  Aligned_cols=36  Identities=14%  Similarity=0.151  Sum_probs=30.6

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~   80 (305)
                      +..+.++|.|||+ |.+|..-+..|+..|-  +|.+++.
T Consensus         9 ~~l~gkrvLViGg-G~va~~ka~~Ll~~GA--~VtVvap   44 (150)
T d1kyqa1           9 HQLKDKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSP   44 (150)
T ss_dssp             ECCTTCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEE
T ss_pred             eeeCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeC
Confidence            3455679999999 9999999999999887  8899864

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.19  E-value=0.0088  Score=48.40  Aligned_cols=35  Identities=20%  Similarity=0.138  Sum_probs=30.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      |||+|||| |+.|..+|..|...+.-.+|.+++..+
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999999 999999999998765555999998754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.18  E-value=0.015  Score=43.25  Aligned_cols=36  Identities=17%  Similarity=0.145  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..|.||+|||| |++|.-+|..+...|.  ++.+++..+
T Consensus        20 ~~p~~v~IiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   55 (117)
T d1ebda2          20 EVPKSLVVIGG-GYIGIELGTAYANFGT--KVTILEGAG   55 (117)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             hcCCeEEEECC-Cccceeeeeeeccccc--EEEEEEecc
Confidence            34569999999 9999999999999998  999999766

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.14  E-value=0.1  Score=43.83  Aligned_cols=111  Identities=23%  Similarity=0.255  Sum_probs=65.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEec-CCCH----------HHHhCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFLG-QQQL----------EDALTG  114 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~~-t~d~----------~~al~~  114 (305)
                      |.|+||++-+|..+|..|+..|.  .|++.|.+.   ++....++...  ..++..+.. -+|.          .+.+..
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            66789999999999999999998  899887754   22222233321  112222211 1121          222357


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHhh----HHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          115 MDIVIIPAGVPRKPG---MT---RDDLFNIN----AGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       115 aDiVIi~ag~~~~~g---~~---r~d~~~~N----~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      -|++|..||......   .+   ....+..|    ....+.+++.+.+.. .+.||++|.
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS  138 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR-KGRIINIAS  138 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcC-CcEEEEEcC
Confidence            899999998653321   11   22334444    345666777776654 566666653

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.013  Score=43.74  Aligned_cols=34  Identities=32%  Similarity=0.422  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      |.||+|||+ |++|.-+|..|...|.  ++.+++..+
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGA--KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhcccc--EEEEEeecc
Confidence            459999999 9999999999999998  999999865

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.04  E-value=0.014  Score=43.85  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.||+|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGI--DSYIFARGN   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccc--cceeeehhc
Confidence            469999999 9999999999998887  999999855

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.022  Score=42.54  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ....||+|+|+ |+.|..++......|+  +++.+|.++
T Consensus         9 ~~~~kigIlGg-GQL~rMla~aA~~lG~--~v~v~d~~~   44 (111)
T d1kjqa2           9 PAATRVMLLGS-GELGKEVAIECQRLGV--EVIAVDRYA   44 (111)
T ss_dssp             TTCCEEEEESC-SHHHHHHHHHHHTTTC--EEEEEESST
T ss_pred             CCCCEEEEEeC-CHHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            34459999999 9999999999998999  999999875

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.028  Score=44.93  Aligned_cols=93  Identities=16%  Similarity=0.109  Sum_probs=61.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      ++++|+|- |.+|..+|..+...|-  .|..+|+++.++... ..+..   .+      ..+++++..+|+||.+.|...
T Consensus        25 k~v~V~Gy-G~iG~g~A~~~rg~G~--~V~v~e~dp~~al~A-~~dG~---~v------~~~~~a~~~adivvtaTGn~~   91 (163)
T d1li4a1          25 KVAVVAGY-GDVGKGCAQALRGFGA--RVIITEIDPINALQA-AMEGY---EV------TTMDEACQEGNIFVTTTGCID   91 (163)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTTC---EE------CCHHHHTTTCSEEEECSSCSC
T ss_pred             CEEEEecc-ccccHHHHHHHHhCCC--eeEeeecccchhHHh-hcCce---Ee------eehhhhhhhccEEEecCCCcc
Confidence            48999998 9999999999998887  999999987322211 12211   11      135799999999999877432


Q ss_pred             CCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec-CCCCcc
Q 021932          127 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVNST  169 (305)
Q Consensus       127 ~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t-NPvd~l  169 (305)
                      -  .+               .+.+++-.+.+++.+++ -...+-
T Consensus        92 v--I~---------------~eh~~~MKdgaIL~N~Ghfd~EId  118 (163)
T d1li4a1          92 I--IL---------------GRHFEQMKDDAIVCNIGHFDVEID  118 (163)
T ss_dssp             S--BC---------------HHHHTTCCTTEEEEECSSSTTSBC
T ss_pred             c--hh---------------HHHHHhccCCeEEEEeccccceec
Confidence            1  11               12333444678888876 344443

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.97  E-value=0.051  Score=45.70  Aligned_cols=116  Identities=13%  Similarity=0.173  Sum_probs=63.9

Q ss_pred             CCEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCce-EEE-EecCCC-------HHHHhC
Q 021932           46 GFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAV-VRG-FLGQQQ-------LEDALT  113 (305)
Q Consensus        46 ~~KI~IIGaaG--~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~-v~~-~~~t~d-------~~~al~  113 (305)
                      .+++.|+||+|  -+|..+|..|+..|.  +|++.|+++ ....+.++........ +.. .....+       ..+.+.
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcC
Confidence            45799999976  599999999999998  899999876 2222222222211111 111 000011       123345


Q ss_pred             CCCEEEEcCCCCCCC-------CCchh---hHHHhhHHHHHHHHHHHHHhC-CCcEEEEec
Q 021932          114 GMDIVIIPAGVPRKP-------GMTRD---DLFNINAGIVKTLCEGIAKCC-PKAIVNLIS  163 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~-------g~~r~---d~~~~N~~i~~~i~~~I~~~~-p~aiviv~t  163 (305)
                      .-|++|.++|.....       ..+..   ..+..|+.....+.+.....- ..+.+++++
T Consensus        86 ~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~is  146 (256)
T d1ulua_          86 GLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT  146 (256)
T ss_dssp             SEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred             CceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEe
Confidence            789999999864211       11222   234556555555555544332 245566664

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.92  E-value=0.013  Score=51.21  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=31.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ++||+|||| |.-|.++|..|+..+...+|++++...
T Consensus         4 ~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           4 IRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            458999999 999999999888887666999999875

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.89  E-value=0.018  Score=43.46  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=30.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+|+|||| |++|.-+|..|...|.  ++.+++..+
T Consensus        31 ~~vvIIGg-G~iG~E~A~~l~~~g~--~Vtli~~~~   63 (121)
T d1d7ya2          31 SRLLIVGG-GVIGLELAATARTAGV--HVSLVETQP   63 (121)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CeEEEECc-chhHHHHHHHhhcccc--eEEEEeecc
Confidence            59999999 9999999999999998  999999876

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.015  Score=48.54  Aligned_cols=35  Identities=20%  Similarity=0.225  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +..||+|||| |.-|.+.|..|.+.|+  +|.+++...
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~--~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGM--DVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            3459999999 9999999999999999  999999765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.82  E-value=0.022  Score=47.32  Aligned_cols=38  Identities=24%  Similarity=0.283  Sum_probs=33.4

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .....+||+|||| |..|.+.|..|.+.|+  ++.++|...
T Consensus        45 ~~~~~k~VvIIGa-GpAGl~aA~~l~~~G~--~v~l~E~~~   82 (233)
T d1djqa3          45 QTKNKDSVLIVGA-GPSGSEAARVLMESGY--TVHLTDTAE   82 (233)
T ss_dssp             CCSSCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cccCCceEEEEcc-cHHHHHHHHHHHHhcc--ceeeEeecc
Confidence            3345679999999 9999999999999999  999999865

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=94.82  E-value=0.05  Score=44.63  Aligned_cols=104  Identities=14%  Similarity=0.246  Sum_probs=60.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEE---------------------Eec
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRG---------------------FLG  104 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~---------------------~~~  104 (305)
                      +||.|||. |.-|..++..|...++ ..+.+.+|.|.     .+|.+.....++..                     ...
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~-----~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~   74 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDL-----QVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALES   74 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCH-----HHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHT
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCH-----HHHhcCCcceEEecccccCCCcccccCchhhHhHHHHH
Confidence            48999999 9999999988887665 34888888764     11222111111110                     000


Q ss_pred             CCCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       105 t~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                      .....+.++++|+||++||.....|       ..-.+++.++++..   . .-++-++|=|-.
T Consensus        75 ~~~I~~~l~~~d~vfi~AGlGGgTG-------tgaapviA~~ake~---g-~lvv~ivtlPF~  126 (194)
T d1w5fa1          75 EEKIREVLQDTHMVFITAGFGGGTG-------TGASPVIAKIAKEM---G-ILTVAIVTTPFY  126 (194)
T ss_dssp             HHHHHHHTTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHT---T-CEEEEEEEECCG
T ss_pred             HHHHHHHhcCCCeEEEEEecCCCcc-------cchHHHHHHHHHHc---C-CceEEEEeechh
Confidence            1235577899999999998763322       12245555555542   2 223555566653

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.011  Score=41.50  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=30.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ++|+|+|+ |+.|..++......|+  +++.+|.++
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa~~LG~--~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAGEPLGI--AVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHHGGGTE--EEEEECTTS
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCC--EEEEEcCCC
Confidence            58999999 9999999998888888  999999865

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=94.78  E-value=0.016  Score=50.97  Aligned_cols=107  Identities=14%  Similarity=0.224  Sum_probs=63.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHh----CCCC-----cEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCCHHHHhCCC-
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKI----NPLV-----SVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGM-  115 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~----~~~~-----~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~a-  115 (305)
                      .||+|.|| |.-|..++.+|..    .|+-     +.+.++|.+. ....-.|+..... ...+......++.++++.+ 
T Consensus        26 ~kivi~GA-GaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~-~~a~~~~~~~~l~~~i~~~k  103 (308)
T d1o0sa1          26 EKYLFFGA-GAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHV-QFAKDMPETTSILEVIRAAR  103 (308)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGT-TTCBSSCCCCCHHHHHHHHC
T ss_pred             cEEEEECc-CHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHH-HHHHhcccCCcHHHHHhccc
Confidence            48999999 9999998876653    3442     4699999865 1111123332210 0011111123455555533 


Q ss_pred             -CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 021932          116 -DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (305)
Q Consensus       116 -DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~l  169 (305)
                       +++|-+.+.+   |-           +.+++++.|.+.+++.+|+-.|||....
T Consensus       104 ptvliG~s~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPtp~~  144 (308)
T d1o0sa1         104 PGALIGASTVR---GA-----------FNEEVIRAMAEINERPIIFALSNPTSKA  144 (308)
T ss_dssp             CSEEEECSSCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGGGC
T ss_pred             cccEEeccccc---CC-----------CCHHHHHHHHhhCCCcEEEEccCCCCCC
Confidence             5666665543   21           1245567788899999999999998643

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.76  E-value=0.011  Score=49.84  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=29.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      -|+|||| |.+|.++|+.|++.|.  +|+++|.++
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~--~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENK--NTALFESGT   37 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4999999 9999999999999997  999999865

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.68  E-value=0.064  Score=38.32  Aligned_cols=69  Identities=25%  Similarity=0.303  Sum_probs=48.9

Q ss_pred             CEEEEEcCCCchHH-HHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           47 FKVAVLGAAGGIGQ-PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        47 ~KI~IIGaaG~VGs-~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      |||-+||. |-.|. .+|..|...|+  +|.-.|..+. .....|+...  ..+  +.+ .+ ++.++++|+||.+.+++
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~--~VsGSD~~~~-~~t~~L~~~G--i~i--~~g-h~-~~~i~~~d~vV~SsAI~   71 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGN--DVYGSNIEET-ERTAYLRKLG--IPI--FVP-HS-ADNWYDPDLVIKTPAVR   71 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTC--EEEEECSSCC-HHHHHHHHTT--CCE--ESS-CC-TTSCCCCSEEEECTTCC
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCC--eEEEEeCCCC-hhHHHHHHCC--CeE--Eee-ec-ccccCCCCEEEEecCcC
Confidence            69999999 77787 67889999999  9999998752 1222355432  222  222 23 36689999999998876

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.60  E-value=0.018  Score=43.46  Aligned_cols=34  Identities=18%  Similarity=-0.040  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      |.|++|||| |++|.-+|..|...|.  +|.++..++
T Consensus        20 P~~vvIIGg-G~iG~E~A~~l~~lG~--~Vtii~~~~   53 (122)
T d1h6va2          20 PGKTLVVGA-SYVALECAGFLAGIGL--DVTVMVRSI   53 (122)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CCeEEEECC-CccHHHHHHHHhhcCC--eEEEEEech
Confidence            458999999 9999999999999997  888888765

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.56  E-value=0.013  Score=46.96  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=29.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ||+|||| |..|.+.|..|.+.|+ .+|+++|..+
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~-~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGI-TDLLILEATD   34 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTC-CCEEEECSSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCC-CcEEEEECCC
Confidence            7999999 9999999999999995 2699999865

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.49  E-value=0.085  Score=44.12  Aligned_cols=116  Identities=21%  Similarity=0.230  Sum_probs=72.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chh--------hhhhhcccCCceEEEEecCCCHHHHhCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGV--------TADISHMDTNAVVRGFLGQQQLEDALTG  114 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~--------~~DL~~~~~~~~v~~~~~t~d~~~al~~  114 (305)
                      ...||.+.|| |..|..++..|...+. +++.++|.+-+  +..        ..++.+......     ...++++++++
T Consensus        25 ~d~riv~~GA-GsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~g   97 (222)
T d1vl6a1          25 EEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITNPER-----LSGDLETALEG   97 (222)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTC-----CCSCHHHHHTT
T ss_pred             hhcEEEEECh-HHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHHhhhcchh-----hhcchHhhccC
Confidence            3458999999 9999999998887765 69999998741  111        111111110111     12467899999


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEee
Q 021932          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT  192 (305)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t  192 (305)
                      +++++-+..    +|.-+.              +.+++.++..+|+-.|||..-..+   +..|.. |   +-+++..
T Consensus        98 ~~~~~g~~~----~~~~~~--------------e~m~~~~~rPIIFpLSNPt~~~e~---~~a~~~-G---~ai~AtG  150 (222)
T d1vl6a1          98 ADFFIGVSR----GNILKP--------------EWIKKMSRKPVIFALANPVPEIDP---ELAREA-G---AFIVATG  150 (222)
T ss_dssp             CSEEEECSC----SSCSCH--------------HHHTTSCSSCEEEECCSSSCSSCH---HHHHHT-T---CSEEEES
T ss_pred             cceeccccc----cccccH--------------HHHhhcCCCCEEEecCCCccchhh---hhheec-c---ceEEecC
Confidence            998666542    222111              245666888999999999876654   223433 2   4566664

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=94.47  E-value=0.097  Score=43.27  Aligned_cols=71  Identities=15%  Similarity=0.143  Sum_probs=42.1

Q ss_pred             CCCEEEEEcCCCchHH-HHHHHHHhCCCCcEEE-EEeCCCCc--hhhhhhhcccCCceEEEEecCCCHHHHhC--CCCEE
Q 021932           45 PGFKVAVLGAAGGIGQ-PLAMLMKINPLVSVLH-LYDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALT--GMDIV  118 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs-~la~~L~~~~~~~el~-L~D~~~~~--g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~aDiV  118 (305)
                      ++.||+|||+ |.+|. .++..+...+.+ +|+ ++|+++..  ..+.+.. .. ...+..+   +|+++.++  +.|+|
T Consensus        32 ~~iriaiIG~-G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~-i~-~~~~~~~---~d~~ell~~~~iD~V  104 (221)
T d1h6da1          32 RRFGYAIVGL-GKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYG-VD-PRKIYDY---SNFDKIAKDPKIDAV  104 (221)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTT-CC-GGGEECS---SSGGGGGGCTTCCEE
T ss_pred             CCEEEEEEcC-cHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhc-cc-ccccccc---Cchhhhcccccceee
Confidence            4569999998 99997 455565555444 555 88987622  2222211 11 1223322   46766664  68899


Q ss_pred             EEcC
Q 021932          119 IIPA  122 (305)
Q Consensus       119 Ii~a  122 (305)
                      +++.
T Consensus       105 ~I~t  108 (221)
T d1h6da1         105 YIIL  108 (221)
T ss_dssp             EECS
T ss_pred             eecc
Confidence            9975

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.44  E-value=0.026  Score=43.19  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=31.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.||+|||| |++|.-+|..|...|.  ++.+++..+
T Consensus        35 ~k~v~VIGg-G~iG~E~A~~l~~~g~--~Vtvie~~~   68 (133)
T d1q1ra2          35 DNRLVVIGG-GYIGLEVAATAIKANM--HVTLLDTAA   68 (133)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhhCc--ceeeeeecc
Confidence            359999999 9999999999999998  999999865

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.41  E-value=0.053  Score=42.89  Aligned_cols=73  Identities=10%  Similarity=0.070  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhhhhhhcc--c-CCceEEEEecCCCHHHHhCCCCEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM--D-TNAVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~--~-~~~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      +..||+++|-...|..+++.++...|.  ++.++-...  ......+....  . ....+..   +.|..+++++||+|.
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~ea~~~adviy   77 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWAEQNAAESGGSFEL---LHDPVKAVKDADVIY   77 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEE---ESCHHHHTTTCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHHHHhhhcccceEEE---ecCHHHHhhhccEEe
Confidence            456999999977788888888888887  899987654  22222221111  0 1234444   347789999999988


Q ss_pred             EcC
Q 021932          120 IPA  122 (305)
Q Consensus       120 i~a  122 (305)
                      .+-
T Consensus        78 ~~~   80 (163)
T d1pvva2          78 TDV   80 (163)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            753

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=94.37  E-value=0.03  Score=49.06  Aligned_cols=108  Identities=18%  Similarity=0.252  Sum_probs=64.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHh----CCC-----CcEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCCHHHHhCC-
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTG-  114 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~----~~~-----~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~-  114 (305)
                      ..||+|.|| |.-|..++.+|..    .|+     .+.+.++|.+. ....-.|+.+... ...+......++.+.++. 
T Consensus        25 d~kiV~~GA-GsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~-~~a~~~~~~~~l~~~i~~v  102 (298)
T d1gq2a1          25 DHTVLFQGA-GEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKE-HFAHEHCEMKNLEDIVKDI  102 (298)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGG-GGCBSCCCCCCHHHHHHHH
T ss_pred             HcEEEEECc-cHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHH-HHHHHhhhhhhhHHHhhcc
Confidence            348999999 9999998876653    343     25799999875 2111123332210 000000011244455543 


Q ss_pred             -CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCcc
Q 021932          115 -MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST  169 (305)
Q Consensus       115 -aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~l  169 (305)
                       .+++|-+.+.+   |-           +.+++++.|.+.+++.+|+-.|||..-.
T Consensus       103 kptvliG~s~~~---g~-----------ft~evv~~ma~~~~~PIIFaLSNPt~~~  144 (298)
T d1gq2a1         103 KPTVLIGVAAIG---GA-----------FTQQILQDMAAFNKRPIIFALSNPTSKA  144 (298)
T ss_dssp             CCSEEEECSCCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGGGC
T ss_pred             ChheeEeccccc---Cc-----------CCHHHHHHHHhhCCCCEEEEccCCCCcC
Confidence             66777766544   21           1344566788889999999999997643

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.34  E-value=0.024  Score=42.07  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      |.|++|+|| |++|.-+|..|...|.  +|.+++..+
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~--~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGA--QVSVVEARE   54 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhccc--ceEEEeeec
Confidence            459999999 9999999999999888  999999865

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.073  Score=45.27  Aligned_cols=114  Identities=18%  Similarity=0.161  Sum_probs=67.4

Q ss_pred             CEEE-EEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCC--chhhhhhhcccCCceEEEEe-cCCC----------HHHH
Q 021932           47 FKVA-VLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGVTADISHMDTNAVVRGFL-GQQQ----------LEDA  111 (305)
Q Consensus        47 ~KI~-IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~t~d----------~~~a  111 (305)
                      ++|+ |+||++-+|..+|..|++. +.  .|++.++++.  +..+.+|....  .++..+. .-+|          ..+.
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dvs~~~sv~~~~~~~~~~   78 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   78 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEEecCCHHHHHHHHHHHHHh
Confidence            4785 6799999999999988864 66  8999999862  33334444322  1112111 1112          2233


Q ss_pred             hCCCCEEEEcCCCCCCC-C--Cch---hhHHHhhHHHHHHHHHHHHHhC-CCcEEEEecC
Q 021932          112 LTGMDIVIIPAGVPRKP-G--MTR---DDLFNINAGIVKTLCEGIAKCC-PKAIVNLISN  164 (305)
Q Consensus       112 l~~aDiVIi~ag~~~~~-g--~~r---~d~~~~N~~i~~~i~~~I~~~~-p~aiviv~tN  164 (305)
                      +..-|++|..||..... .  .+.   ...+..|+-....+.+.+...- +.+.+++++.
T Consensus        79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            46899999999974322 1  112   2245567666666666555443 3567777764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.066  Score=42.38  Aligned_cols=70  Identities=14%  Similarity=0.280  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchh--hhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~--~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      +.++|.|+|+ |-.+.++++.|...+.  +|.+++++..+++  +..+.+.   ..++...  .+ .....++|+||.|.
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~--~i~I~nRt~~ka~~l~~~~~~~---~~~~~~~--~~-~~~~~~~dliIN~T   87 (170)
T d1nyta1          17 PGLRILLIGA-GGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHT---GSIQALS--MD-ELEGHEFDLIINAT   87 (170)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGG---SSEEECC--SG-GGTTCCCSEEEECC
T ss_pred             CCCEEEEECC-cHHHHHHHHHhcccce--EEEeccchHHHHHHHHHHHhhc---ccccccc--cc-cccccccceeeccc
Confidence            3459999999 9999999999999886  7999988653222  2222221   2333321  11 12357899999986


Q ss_pred             C
Q 021932          123 G  123 (305)
Q Consensus       123 g  123 (305)
                      .
T Consensus        88 p   88 (170)
T d1nyta1          88 S   88 (170)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.1  Score=41.77  Aligned_cols=56  Identities=21%  Similarity=0.407  Sum_probs=42.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ..++|+|||.+..||..++.+|.+.+-  .+..++...                       .++++.+++||++|.++|.
T Consensus        38 ~Gk~vvVIGrS~iVGrPLa~lL~~~ga--tVt~~~~~t-----------------------~~l~~~~~~aDivi~a~G~   92 (170)
T d1a4ia1          38 AGRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHSKT-----------------------AHLDEEVNKGDILVVATGQ   92 (170)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTTC-----------------------SSHHHHHTTCSEEEECCCC
T ss_pred             ccceEEEEecCCccchHHHHHHHhccC--ceEEEeccc-----------------------ccHHHHHhhccchhhcccc
Confidence            346999999988899999999999886  777776532                       2344556777777777765


Q ss_pred             C
Q 021932          125 P  125 (305)
Q Consensus       125 ~  125 (305)
                      |
T Consensus        93 ~   93 (170)
T d1a4ia1          93 P   93 (170)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.13  E-value=0.086  Score=43.65  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=29.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~   82 (305)
                      .||.|||. |.-|..++..|...++ ..+.+.+|.+.
T Consensus        16 ~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~   51 (209)
T d2vapa1          16 AKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDA   51 (209)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBH
T ss_pred             CcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCH
Confidence            48999999 9999999998888765 35888888764

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.066  Score=42.81  Aligned_cols=56  Identities=21%  Similarity=0.453  Sum_probs=43.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGV  124 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~  124 (305)
                      ..++|+|||-+..||..++.+|.+.+.  .+..++..                       +.++++.+++||+||.++|.
T Consensus        36 ~GK~v~VIGrS~~VG~Pla~lL~~~ga--tVt~~h~~-----------------------t~~l~~~~~~ADivI~a~G~   90 (166)
T d1b0aa1          36 FGLNAVVIGASNIVGRPMSMELLLAGC--TTTVTHRF-----------------------TKNLRHHVENADLLIVAVGK   90 (166)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTTC--EEEEECSS-----------------------CSCHHHHHHHCSEEEECSCC
T ss_pred             ccceEEEEeccccccHHHHHHHHHhhc--cccccccc-----------------------cchhHHHHhhhhHhhhhccC
Confidence            346999999988899999999988876  66666532                       23456778889999998886


Q ss_pred             C
Q 021932          125 P  125 (305)
Q Consensus       125 ~  125 (305)
                      |
T Consensus        91 p   91 (166)
T d1b0aa1          91 P   91 (166)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.032  Score=42.08  Aligned_cols=34  Identities=18%  Similarity=0.089  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ++||+|||+ |++|.-+|..|...|.  +|.+++..+
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~--~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGS--KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCc--EEEEEeecc
Confidence            359999999 9999999999999998  999999875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.04  E-value=0.042  Score=41.07  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..|.||+|||+ |++|.-+|..+...|.  ++.++...+
T Consensus        20 ~~p~~i~IiG~-G~ig~E~A~~l~~~G~--~Vtiv~~~~   55 (119)
T d3lada2          20 NVPGKLGVIGA-GVIGLELGSVWARLGA--EVTVLEAMD   55 (119)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCCeEEEECC-ChHHHHHHHHHHHcCC--ceEEEEeec
Confidence            34579999999 9999999999999988  999998765

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.03  E-value=0.053  Score=42.96  Aligned_cols=68  Identities=19%  Similarity=0.275  Sum_probs=44.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      ..||.|+|+ |-++.++++.|...|. .+|.+++++..++  ..|....  . ....   ..+  ...++|+||.|....
T Consensus        17 ~~~vlIlGa-GGaarai~~aL~~~g~-~~I~I~nR~~~ka--~~L~~~~--~-~~~~---~~~--~~~~~DliINaTpiG   84 (167)
T d1npya1          17 NAKVIVHGS-GGMAKAVVAAFKNSGF-EKLKIYARNVKTG--QYLAALY--G-YAYI---NSL--ENQQADILVNVTSIG   84 (167)
T ss_dssp             TSCEEEECS-STTHHHHHHHHHHTTC-CCEEEECSCHHHH--HHHHHHH--T-CEEE---SCC--TTCCCSEEEECSSTT
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEecccHHHH--HHHHHhh--h-hhhh---hcc--cccchhhheeccccC
Confidence            458999999 9999999999998885 4899998865322  2222221  1 1111   111  246899999986543

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.00  E-value=0.11  Score=41.96  Aligned_cols=72  Identities=15%  Similarity=0.203  Sum_probs=47.1

Q ss_pred             CCEEEEEcC-CCchHHHHHHHHHhCCCCcEEEEEeCCC--Cc-hhhhhhhccc--CCceEEEEecCCCHHHHhCCCCEEE
Q 021932           46 GFKVAVLGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN--TP-GVTADISHMD--TNAVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGa-aG~VGs~la~~L~~~~~~~el~L~D~~~--~~-g~~~DL~~~~--~~~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      ..||+++|= ...|..+++..+...|.  +|.++-...  .. ....++....  ....+..   ++|.+++++++|+|.
T Consensus         5 ~lkia~vGD~~nnV~~Sli~~~~~~G~--~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~eai~~aDvVy   79 (185)
T d1dxha2           5 DISYAYLGDARNNMGNSLLLIGAKLGM--DVRIAAPKALWPHDEFVAQCKKFAEESGAKLTL---TEDPKEAVKGVDFVH   79 (185)
T ss_dssp             GCEEEEESCCSSHHHHHHHHHHHHTTC--EEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEE---ESCHHHHTTTCSEEE
T ss_pred             CCEEEEEcCCcchHHHHHHHHHHHcCC--EEEEEccHHHHhhhHHHHHHHHHhhccCCeEEE---EeChhhccccccEEE
Confidence            469999994 24789999999988887  999987643  11 1111111111  1334554   357889999999987


Q ss_pred             EcC
Q 021932          120 IPA  122 (305)
Q Consensus       120 i~a  122 (305)
                      ...
T Consensus        80 t~~   82 (185)
T d1dxha2          80 TDV   82 (185)
T ss_dssp             ECC
T ss_pred             eeh
Confidence            753

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.92  E-value=0.018  Score=46.22  Aligned_cols=75  Identities=17%  Similarity=0.267  Sum_probs=48.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--chhhhhhhcccCC---ceEEEEecCCCHHHHhCCCCEE
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTN---AVVRGFLGQQQLEDALTGMDIV  118 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~--~g~~~DL~~~~~~---~~v~~~~~t~d~~~al~~aDiV  118 (305)
                      .+.++|.|+|+ |-++.++++.|...+   +|.+++++..  +..+.++......   ..+..    .+++..+.++|++
T Consensus        16 ~~~k~vlIlGa-GG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dli   87 (177)
T d1nvta1          16 VKDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF----SGLDVDLDGVDII   87 (177)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE----ECTTCCCTTCCEE
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhh----hhhhhccchhhhh
Confidence            34569999999 999999998885433   8999998752  2233344332111   12222    2344567899999


Q ss_pred             EEcCCCCC
Q 021932          119 IIPAGVPR  126 (305)
Q Consensus       119 Ii~ag~~~  126 (305)
                      |.+...+.
T Consensus        88 In~tp~g~   95 (177)
T d1nvta1          88 INATPIGM   95 (177)
T ss_dssp             EECSCTTC
T ss_pred             ccCCcccc
Confidence            99865443

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.83  E-value=0.027  Score=46.25  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=28.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ||+|||| |.-|.+.|..|.+.+.--+|.++|..+
T Consensus         3 kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             eEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            9999999 999999999887654333999999875

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.78  E-value=0.11  Score=41.57  Aligned_cols=79  Identities=19%  Similarity=0.206  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCch--hhh----hhhcccCCceEE-----EEecCCCHHHHhC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTA----DISHMDTNAVVR-----GFLGQQQLEDALT  113 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g--~~~----DL~~~~~~~~v~-----~~~~t~d~~~al~  113 (305)
                      +++||+|.|- |.+|..++..+..++-..-+.+.|..+...  ...    ++.+.. ...+.     .+....++.+.+.
T Consensus         1 M~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   78 (172)
T d2czca2           1 MKVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAAS-EEFIPRFEKEGFEVAGTLNDLLE   78 (172)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESS-GGGHHHHHHHTCCCSCBHHHHHT
T ss_pred             CcEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeeccc-ccceeeecccCccccchhhhhhc
Confidence            4579999998 999999998888776554445666544211  111    111110 00000     0111235667788


Q ss_pred             CCCEEEEcCCCC
Q 021932          114 GMDIVIIPAGVP  125 (305)
Q Consensus       114 ~aDiVIi~ag~~  125 (305)
                      ++|+||.|.|..
T Consensus        79 ~vDvViEcTG~f   90 (172)
T d2czca2          79 KVDIIVDATPGG   90 (172)
T ss_dssp             TCSEEEECCSTT
T ss_pred             cCCEEEECCCCC
Confidence            999999998743

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.77  E-value=0.23  Score=41.59  Aligned_cols=102  Identities=19%  Similarity=0.180  Sum_probs=57.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---CchhhhhhhcccCCceEEEEe-cCCC----------HHHHhC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTNAVVRGFL-GQQQ----------LEDALT  113 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~t~d----------~~~al~  113 (305)
                      .+.|+||++-+|..+|..|++.|.  +|++.+...   ++....++....  .++..+. .-+|          ..+.+.
T Consensus         8 ~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (259)
T d1ja9a_           8 VALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSHFG   83 (259)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence            788999999999999999999999  888866544   222223333321  1222211 1112          122345


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh
Q 021932          114 GMDIVIIPAGVPRKPG---MT---RDDLFNINAGIVKTLCEGIAKC  153 (305)
Q Consensus       114 ~aDiVIi~ag~~~~~g---~~---r~d~~~~N~~i~~~i~~~I~~~  153 (305)
                      .-|++|..+|......   .+   ....+..|+...-.+.+...++
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~  129 (259)
T d1ja9a_          84 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKH  129 (259)
T ss_dssp             CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhh
Confidence            7999999998642211   11   2234555655444444444433

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.76  E-value=0.027  Score=42.42  Aligned_cols=36  Identities=19%  Similarity=0.195  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..|.+++|||+ |.+|.-+|..+...|.  +|.++...+
T Consensus        23 ~~p~~~viiG~-G~iglE~A~~~~~~G~--~Vtvi~~~~   58 (123)
T d1dxla2          23 EIPKKLVVIGA-GYIGLEMGSVWGRIGS--EVTVVEFAS   58 (123)
T ss_dssp             SCCSEEEESCC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             ccCCeEEEEcc-chHHHHHHHHHHhcCC--eEEEEEEcc
Confidence            34569999999 9999999999999897  999998865

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.31  Score=41.54  Aligned_cols=114  Identities=14%  Similarity=0.167  Sum_probs=60.6

Q ss_pred             CEEEEE-cCCCchHHHHHHHHHhCCCCcEEEEEeC---CC-Cchhhhhhhcc--cCCceEEEEec-CCCHHH---Hh---
Q 021932           47 FKVAVL-GAAGGIGQPLAMLMKINPLVSVLHLYDV---VN-TPGVTADISHM--DTNAVVRGFLG-QQQLED---AL---  112 (305)
Q Consensus        47 ~KI~II-GaaG~VGs~la~~L~~~~~~~el~L~D~---~~-~~g~~~DL~~~--~~~~~v~~~~~-t~d~~~---al---  112 (305)
                      +||++| ||++-+|..+|..|+..|.  .+++++.   +. ..+...+....  ....++..+.. -+|.++   .+   
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga--~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~   79 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV   79 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC--CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhc
Confidence            478755 9999999999999999886  4444443   21 11111111111  01223333211 122211   11   


Q ss_pred             --CCCCEEEEcCCCCCCCC---Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCcEEEEec
Q 021932          113 --TGMDIVIIPAGVPRKPG---MT---RDDLFNINA----GIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       113 --~~aDiVIi~ag~~~~~g---~~---r~d~~~~N~----~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                        ...|++|..+|......   .+   ....+..|+    ...+.+++.|.+... +.|++++
T Consensus        80 ~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~-G~Iv~is  141 (285)
T d1jtva_          80 TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGS-GRVLVTG  141 (285)
T ss_dssp             TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred             cccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCC-CceEEEe
Confidence              46899999998643321   11   223344454    467777788877654 5555554

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.67  E-value=0.038  Score=41.41  Aligned_cols=33  Identities=21%  Similarity=0.147  Sum_probs=30.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+|+|||| |++|.-+|..|...|.  ++.|++..+
T Consensus        33 ~~vvIiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGG-GFIGLELAGNLAEAGY--HVKLIHRGA   65 (122)
T ss_dssp             SEEEEEEC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CcEEEECC-cHHHHHHHHHhhcccc--eEEEEeccc
Confidence            48999999 9999999999999998  999999866

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.65  E-value=0.045  Score=43.09  Aligned_cols=72  Identities=19%  Similarity=0.234  Sum_probs=47.1

Q ss_pred             CCEEEEEc-CCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhhh-hhhccc--CCceEEEEecCCCHHHHhCCCCEEE
Q 021932           46 GFKVAVLG-AAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTA-DISHMD--TNAVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        46 ~~KI~IIG-aaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~-DL~~~~--~~~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      ..||+++| +...|-.+++..+...|.  +++++-...  ...... ......  ....+..   ++|++++++++|+|.
T Consensus         3 g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~---~~d~~~ai~~aDviy   77 (161)
T d1vlva2           3 GVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFKRCQEIVKETDGSVSF---TSNLEEALAGADVVY   77 (161)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEE---ESCHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHHHHHHHHhhcCCceEE---EecHHHhhhhhhhee
Confidence            45999999 435788888888888887  888886543  111111 111110  1334554   357889999999998


Q ss_pred             EcC
Q 021932          120 IPA  122 (305)
Q Consensus       120 i~a  122 (305)
                      ...
T Consensus        78 t~~   80 (161)
T d1vlva2          78 TDV   80 (161)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            753

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.64  E-value=0.025  Score=46.12  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=28.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCC----CcEEEEEeCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPL----VSVLHLYDVV   81 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~----~~el~L~D~~   81 (305)
                      |||+|||| |-+|.+.|+.|++.|+    ..++.+++..
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            69999999 9999999999998764    3567777654

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.63  E-value=0.026  Score=48.13  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=29.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +|+|||| |-+|.++|+.|++.|. .+|+|+|.+.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~-~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGW-NNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            7999999 9999999999999885 2799999864

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.56  E-value=0.33  Score=40.25  Aligned_cols=104  Identities=14%  Similarity=0.137  Sum_probs=59.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHh---CCCCcEEEEEeCCCCchh-hhhhhcccCCceEEEEec----CCCHHHH------
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVNTPGV-TADISHMDTNAVVRGFLG----QQQLEDA------  111 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~---~~~~~el~L~D~~~~~g~-~~DL~~~~~~~~v~~~~~----t~d~~~a------  111 (305)
                      |++|.|+||++-+|..+|..|+.   .|.  .|++.++++.... ..++...  ..++..+..    ..+.++.      
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~--~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~i~~   77 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKN--HSNIHILEIDLRNFDAYDKLVADIEG   77 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHH--CTTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHhc--CCcEEEEEEEeccHHHHHHHHhhhHH
Confidence            45799999999999999988864   456  9999999873222 2233222  122332211    1112111      


Q ss_pred             ---hCCCCEEEEcCCCCCCCC----Cc---hhhHHHhhH----HHHHHHHHHHHHh
Q 021932          112 ---LTGMDIVIIPAGVPRKPG----MT---RDDLFNINA----GIVKTLCEGIAKC  153 (305)
Q Consensus       112 ---l~~aDiVIi~ag~~~~~g----~~---r~d~~~~N~----~i~~~i~~~I~~~  153 (305)
                         ....|++|..||.....+    .+   ..+.+..|.    ...+.+.+.+.+.
T Consensus        78 ~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~  133 (248)
T d1snya_          78 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKA  133 (248)
T ss_dssp             HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence               245899999999743322    11   122344453    3455666666653

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=93.54  E-value=0.41  Score=39.71  Aligned_cols=118  Identities=16%  Similarity=0.101  Sum_probs=66.8

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----CchhhhhhhcccCCceEEEEec-CCCH---HHH-
Q 021932           42 GGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTNAVVRGFLG-QQQL---EDA-  111 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-----~~g~~~DL~~~~~~~~v~~~~~-t~d~---~~a-  111 (305)
                      .+.+...|.|+||+|-+|..++..|+++|. ..|+|+.++.     ......++...  ..++..+.. -+|.   ++. 
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga-~~vvl~~R~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dv~d~~~~~~~~   81 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRESVRELL   81 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHH
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCccCHHHHHHHHHHHHhc--cccccccccccchHHHHHHhh
Confidence            344556899999999999999999999886 3688887643     12222333322  233443221 1221   111 


Q ss_pred             --h---CCCCEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Q 021932          112 --L---TGMDIVIIPAGVPRKPG---MTR---DDLFNINAGIVKTLCEGIAKCCPKAIVNLIS  163 (305)
Q Consensus       112 --l---~~aDiVIi~ag~~~~~g---~~r---~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t  163 (305)
                        +   ...|.||.++|......   ++.   ...+..|+.....+.+.+.+.. .+.++++|
T Consensus        82 ~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~-~~~iv~~S  143 (259)
T d2fr1a1          82 GGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD-LTAFVLFS  143 (259)
T ss_dssp             HTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC-CSEEEEEE
T ss_pred             ccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccC-CceEeeec
Confidence              1   14778899988654322   121   2234556666666666555443 34454444

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.53  E-value=0.02  Score=46.84  Aligned_cols=36  Identities=11%  Similarity=0.148  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~-----~~el~L~D~~~   82 (305)
                      |.||+|||| |.-|.+.|+.|.+.|+     .-+|.++|..+
T Consensus         2 p~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           2 PYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            469999999 9999999999988763     13899999876

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.40  E-value=0.059  Score=47.42  Aligned_cols=70  Identities=10%  Similarity=0.067  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ....++|||+ |..+...+..+...-.+.+|.++|+++  ....+.++.+.  ...+..     +.++++++||+|+.+.
T Consensus       124 ~~~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~--~~~~~~-----~~~~a~~~aDiV~taT  195 (320)
T d1omoa_         124 NSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDR--GISASV-----QPAEEASRCDVLVTTT  195 (320)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHT--TCCEEE-----CCHHHHTSSSEEEECC
T ss_pred             CccEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhc--CCcccc-----chhhhhccccEEEEec
Confidence            4458999998 999988887666543367999999876  33344444443  222322     2358899999988764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.32  E-value=0.033  Score=48.49  Aligned_cols=33  Identities=21%  Similarity=0.212  Sum_probs=30.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..|+|||| |..|-.+|..|.+.|+  +++++|..+
T Consensus         8 ~dV~IIGA-G~sGl~~a~~L~~~G~--~v~i~Ek~~   40 (298)
T d1w4xa1           8 VDVLVVGA-GFSGLYALYRLRELGR--SVHVIETAG   40 (298)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECc-cHHHHHHHHHHHhCCC--CEEEEEcCC
Confidence            38999999 9999999999999998  899999865

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.31  E-value=0.032  Score=46.92  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=30.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .||.|+|+ |-+|+.++..|+..|+ .+|.|+|-+.
T Consensus        31 ~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_          31 SRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            48999999 9999999999999997 5999999765

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=93.31  E-value=0.04  Score=46.36  Aligned_cols=35  Identities=20%  Similarity=0.150  Sum_probs=30.5

Q ss_pred             CCEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~--VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+++.|+||+|.  +|..+|..|+..|.  +|+|.+.++
T Consensus         6 gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~   42 (268)
T d2h7ma1           6 GKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDR   42 (268)
T ss_dssp             TCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            458999997664  99999999999998  999999876

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.29  E-value=0.034  Score=44.22  Aligned_cols=32  Identities=25%  Similarity=0.239  Sum_probs=29.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      -|+|||| |.-|.+.|..|++.|+  +|.++|.++
T Consensus         7 DviViGa-G~~Gl~~A~~La~~G~--~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGT-GITECILSGLLSVDGK--KVLHIDKQD   38 (297)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEcCCC
Confidence            3899998 9999999999999998  999999876

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.26  E-value=0.06  Score=39.83  Aligned_cols=34  Identities=12%  Similarity=0.103  Sum_probs=30.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .++|+|||+ |++|.-+|..|...+.  ++.+++..+
T Consensus        22 ~~~vvVvGg-G~ig~E~A~~l~~~g~--~vt~i~~~~   55 (121)
T d1mo9a2          22 GSTVVVVGG-SKTAVEYGCFFNATGR--RTVMLVRTE   55 (121)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcch--hheEeeccc
Confidence            469999999 9999999999998887  999999865

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.22  E-value=0.14  Score=39.90  Aligned_cols=70  Identities=14%  Similarity=0.106  Sum_probs=42.6

Q ss_pred             CCEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           46 GFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        46 ~~KI~IIGaaG~--VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      ..||+++|=..+  |..+++..+...|.  +++++=..+......++... ....+..+   +|+++++++||+|..+
T Consensus         3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~--~~~~~~p~~~~~~~~~~~~~-~~~~~~~~---~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           3 GLVFALLGDLKYARTVNSLLRILTRFRP--KLVYLISPQLLRARKEILDE-LNYPVKEV---ENPFEVINEVDVLYVT   74 (153)
T ss_dssp             TCEEEEEECCSSCHHHHHHHHHGGGSCC--SEEEEECCGGGCCCHHHHTT-CCSCEEEE---SCGGGTGGGCSEEEEE
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHHcCC--eeEEEecccccccchhhccc-CCCeEEEE---eCHHHHhhcCCeEEEe
Confidence            469999997333  88899988888886  55544332211000111111 12345543   4778999999988776

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.20  E-value=0.16  Score=42.12  Aligned_cols=32  Identities=16%  Similarity=0.214  Sum_probs=29.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..|+||++-+|..+|..|++.|.  +|++.|++.
T Consensus         4 AlVTGas~GIG~aia~~la~~G~--~Vvi~~r~~   35 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGF--RVVVHYRHS   35 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            46889999999999999999998  999999875

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.17  E-value=0.045  Score=41.81  Aligned_cols=28  Identities=21%  Similarity=0.369  Sum_probs=23.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLH   76 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~   76 (305)
                      |||+|.|++|.+|+.++..+...++  +++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~--~l~   28 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH--ELV   28 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC--eEE
Confidence            6999999999999999988877776  544

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.01  E-value=0.069  Score=43.10  Aligned_cols=75  Identities=20%  Similarity=0.182  Sum_probs=44.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCc-hhhhhhhc----ccC-------CceEEEEecCCCHHHHhC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISH----MDT-------NAVVRGFLGQQQLEDALT  113 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~-g~~~DL~~----~~~-------~~~v~~~~~t~d~~~al~  113 (305)
                      |.||+|.|- |.+|..++..+..++-..-+.+.|..+.. ...+-..+    ...       ...+.   ...++++.+.
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---v~g~~~~~~~   76 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIP---VAGTVEDLIK   76 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCC---CCCCHHHHHH
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceecccccee---cCCchhhhhh
Confidence            469999998 99999999999887755344445554321 11110000    000       01111   1235667788


Q ss_pred             CCCEEEEcCCC
Q 021932          114 GMDIVIIPAGV  124 (305)
Q Consensus       114 ~aDiVIi~ag~  124 (305)
                      ++|+||.|.|.
T Consensus        77 ~vDiViecTG~   87 (178)
T d1b7go1          77 TSDIVVDTTPN   87 (178)
T ss_dssp             HCSEEEECCST
T ss_pred             cCCEEEECCCC
Confidence            99999999763

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=92.94  E-value=0.058  Score=42.58  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=24.9

Q ss_pred             CCCEEEEEcCCCchHHHH-HHHHHhCCCCcEEEEE-eCCC
Q 021932           45 PGFKVAVLGAAGGIGQPL-AMLMKINPLVSVLHLY-DVVN   82 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~l-a~~L~~~~~~~el~L~-D~~~   82 (305)
                      +++||+|||+ |.+|..+ ...|...+.. ||+++ |++.
T Consensus         3 kkirvaIIGa-G~ig~~~~~~~l~~~~~~-el~avas~~~   40 (157)
T d1nvmb1           3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYL-EMGAMVGIDA   40 (157)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHCSSE-EEEEEECSCT
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHhhCCcc-eEEEEEecch
Confidence            3479999996 9999865 4555555655 66554 7654

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.92  E-value=0.075  Score=44.49  Aligned_cols=105  Identities=16%  Similarity=0.152  Sum_probs=59.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEec-CCCH----------HHHh--
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLG-QQQL----------EDAL--  112 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-t~d~----------~~al--  112 (305)
                      ++.|.|+||++-+|..+|..|+..|....|++.++++.+.  .++.... ..++..+.. -+|.          .+.+  
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~--~~l~~~~-~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~   79 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA--TELKSIK-DSRVHVLPLTVTCDKSLDTFVSKVGEIVGS   79 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC--HHHHTCC-CTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH--HHHHHhh-CCceEEEEEecCCHHHHHHHHHHHHHHhCC
Confidence            3589999999999999999999988644788888765221  1222211 122222211 1121          1112  


Q ss_pred             CCCCEEEEcCCCCCCC----CCch---hhHHHhhH----HHHHHHHHHHHHh
Q 021932          113 TGMDIVIIPAGVPRKP----GMTR---DDLFNINA----GIVKTLCEGIAKC  153 (305)
Q Consensus       113 ~~aDiVIi~ag~~~~~----g~~r---~d~~~~N~----~i~~~i~~~I~~~  153 (305)
                      .+-|++|.+||.....    ..+.   .+.+..|+    .+.+.+.+.+++.
T Consensus        80 ~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~  131 (250)
T d1yo6a1          80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNA  131 (250)
T ss_dssp             GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH
T ss_pred             CCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            2489999999964321    1222   23444453    4556666767654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=92.84  E-value=0.041  Score=46.26  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=29.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      -|+|||| |.+|.++|+.|+++|+  +|+|+|...
T Consensus         5 DvvIIGa-Gi~Gls~A~~La~~G~--~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAFD   36 (281)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            3899999 9999999999999998  999999754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.72  E-value=0.037  Score=47.82  Aligned_cols=41  Identities=17%  Similarity=0.141  Sum_probs=33.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhhhh
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTAD   89 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~D   89 (305)
                      |.+|+|||| |..|.++|..|++.|.  +|.++|.+. .-|.+.+
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~--~V~iiEk~~~iGG~~~t   42 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNK--KVLVIEKRNHIGGNAYT   42 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTC--CEEEECSSSSSSGGGCE
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCC--cEEEEECCCCcccceEE
Confidence            358999999 9999999999998887  999999876 4454443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=92.61  E-value=0.1  Score=41.45  Aligned_cols=66  Identities=20%  Similarity=0.144  Sum_probs=49.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      ++++|+|= |.+|..+|..+...|-  .|..+++++.++... ..|.  + ++      ...+++++.+|++|-+.|..
T Consensus        24 k~vvV~GY-G~vGrG~A~~~rg~Ga--~V~V~E~DPi~alqA-~mdG--f-~v------~~~~~a~~~aDi~vTaTGn~   89 (163)
T d1v8ba1          24 KIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICAIQA-VMEG--F-NV------VTLDEIVDKGDFFITCTGNV   89 (163)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHH-HTTT--C-EE------CCHHHHTTTCSEEEECCSSS
T ss_pred             CEEEEecc-cccchhHHHHHHhCCC--EEEEEecCchhhHHH-HhcC--C-cc------CchhHccccCcEEEEcCCCC
Confidence            48999998 9999999999998887  999999988432211 1222  1 11      14679999999999987643

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.27  Score=39.23  Aligned_cols=71  Identities=10%  Similarity=0.196  Sum_probs=46.2

Q ss_pred             CCEEEEEcC-CCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchh----hhhhhcccCCceEEEEecCCCHHHHhCCCCEE
Q 021932           46 GFKVAVLGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGV----TADISHMDTNAVVRGFLGQQQLEDALTGMDIV  118 (305)
Q Consensus        46 ~~KI~IIGa-aG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~----~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiV  118 (305)
                      ..||+++|= ...|..+++..+...|.  +|+++-..+  ....    +.+.... ....+..   +.|.+++++++|+|
T Consensus         5 ~l~i~~vGD~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~~-~g~~~~~---~~d~~~a~~~aDvv   78 (183)
T d1duvg2           5 EMTLVYAGDARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQQ-NGGNITL---TEDVAKGVEGADFI   78 (183)
T ss_dssp             GCEEEEESCTTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHHH-TTCEEEE---ESCHHHHHTTCSEE
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHHh-cCCceEE---EechhhccccCCEE
Confidence            459999995 13688888888888887  999987644  1111    1112111 1334444   35788999999998


Q ss_pred             EEcC
Q 021932          119 IIPA  122 (305)
Q Consensus       119 Ii~a  122 (305)
                      ....
T Consensus        79 yt~~   82 (183)
T d1duvg2          79 YTDV   82 (183)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            8763

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.43  E-value=0.13  Score=42.09  Aligned_cols=102  Identities=19%  Similarity=0.309  Sum_probs=60.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEEE---------------------EecC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVRG---------------------FLGQ  105 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~~---------------------~~~t  105 (305)
                      +|-|||. |--|..++..|...++ .-+++.+|.|.     .+|.......++..                     ....
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~-----~~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~   76 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDA-----QALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDR   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBT-----GGGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTH
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcH-----HHHhcCCccceeccccccccCCCCCCChHHHHHHHHHHH
Confidence            5889999 9999999999988875 24888888875     11111110001100                     0001


Q ss_pred             CCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 021932          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV  166 (305)
Q Consensus       106 ~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPv  166 (305)
                      ....+.++++|+||++||.....|       ..-+|++.++++..   + --++-++|=|-
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGGTG-------tgaapviA~~ake~---g-~lvvaivtlPF  126 (198)
T d1ofua1          77 ERISEVLEGADMVFITTGMGGGTG-------TGAAPIIAEVAKEM---G-ILTVAVVTRPF  126 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHT---T-CEEEEEEEECC
T ss_pred             HHHHHHhCCCCeEEEEecCCCCcc-------ccHHHHHHHHHHHc---C-CCEEEEEecch
Confidence            234577899999999998763322       12356666665442   2 22355556664

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.37  E-value=0.12  Score=42.29  Aligned_cols=103  Identities=20%  Similarity=0.314  Sum_probs=61.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCCchhhhhhhcccCCceEE-------EE--------------ecC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTNAVVR-------GF--------------LGQ  105 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~~~g~~~DL~~~~~~~~v~-------~~--------------~~t  105 (305)
                      +|-|||- |--|..++..|...++ -.+++.+|.|.   +.  |.......++.       +.              ...
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~---~~--L~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~   76 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDA---QA--LLMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAK   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCH---HH--HHHCCCSEEEECCTTTC-----CCCHHHHHHHHHHTH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchH---HH--HhcCCcchhhccccccccCCCcCcChhhhHhhHHHHH
Confidence            5788998 9999999999988875 34788888764   11  11111001111       00              001


Q ss_pred             CCHHHHhCCCCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       106 ~d~~~al~~aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                      ....+.++++|+||++||.....|       ..=+|++.++++...    --.+-++|-|-.
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGgTG-------tGaaPviA~iake~g----~l~v~ivt~PF~  127 (198)
T d1rq2a1          77 DEIEELLRGADMVFVTAGEGGGTG-------TGGAPVVASIARKLG----ALTVGVVTRPFS  127 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHHT----CEEEEEEEECCG
T ss_pred             HHHHHHhcCCCEEEEEEecCCCCC-------cchHHHHHHHHHHcC----CcEEEEEecChH
Confidence            235678899999999998764332       123577777766642    223555666653

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=92.24  E-value=0.17  Score=41.53  Aligned_cols=36  Identities=31%  Similarity=0.336  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+.++|+|-|- |.||+.+|..|...|.  .|+..|++.
T Consensus        25 L~gk~v~IqG~-G~VG~~~A~~L~~~Ga--kvvv~d~d~   60 (201)
T d1c1da1          25 LDGLTVLVQGL-GAVGGSLASLAAEAGA--QLLVADTDT   60 (201)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEecchH
Confidence            44569999998 9999999999999997  899999875

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=92.08  E-value=0.14  Score=39.93  Aligned_cols=63  Identities=11%  Similarity=0.199  Sum_probs=43.4

Q ss_pred             CCEEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcC
Q 021932           46 GFKVAVLGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA  122 (305)
Q Consensus        46 ~~KI~IIGa--aG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~a  122 (305)
                      ..||+++|=  .|.|..+++..+...|.  ++++....+.       ...  ...+..+   .+++++++++|+|..+-
T Consensus         3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~--~~~i~~P~~~-------~~~--~~~~~~~---~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           3 GLTVSIHGDIKHSRVARSNAEVLTRLGA--RVLFSGPSEW-------QDE--ENTFGTY---VSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHcCC--cccccCCchh-------hcc--ccceeEE---EechhccccCceeeeeE
Confidence            359999997  46699999999988887  7777765431       100  1123332   35679999999988753

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.03  E-value=0.095  Score=39.50  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..+.+++|||+ |++|.-+|..+...|.  ++.+++..+
T Consensus        24 ~~p~~vvIiGg-G~IG~E~A~~~~~~G~--~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGG-GIIGLEMGTVYSTLGS--RLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             ccCCeEEEECC-CHHHHHHHHHhhcCCC--EEEEEEeec
Confidence            44569999999 9999999999998888  999998755

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.87  E-value=0.65  Score=35.42  Aligned_cols=113  Identities=11%  Similarity=0.034  Sum_probs=68.7

Q ss_pred             CEEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaa---G~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +.|+||||+   +..|..++..|...|+  +|+.+..+.  +   ++.-      ...+   .++.+.-...|+|+++. 
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~--~---~i~G------~~~~---~sl~dlp~~iD~v~i~v-   82 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKY--E---EVLG------RKCY---PSVLDIPDKIEVVDLFV-   82 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTC--S---EETT------EECB---SSGGGCSSCCSEEEECS-
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCcc--c---ccCC------Cccc---ccccccCccceEEEEEe-
Confidence            489999996   5789999999999999  888887542  1   1111      1111   13333234689999874 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-e-ehhhHHH
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-T-MLDVVRA  199 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t-~Lds~R~  199 (305)
                                     +.+.+.++++++.+.+++++++....-.+    -+.+.+++. |+   +++|= | ..+..||
T Consensus        83 ---------------p~~~~~~~~~e~~~~g~k~v~~~~G~~~e----e~~~~a~~~-gi---~vig~~C~~v~~~rl  137 (139)
T d2d59a1          83 ---------------KPKLTMEYVEQAIKKGAKVVWFQYNTYNR----EASKKADEA-GL---IIVANRCMMREHERL  137 (139)
T ss_dssp             ---------------CHHHHHHHHHHHHHHTCSEEEECTTCCCH----HHHHHHHHT-TC---EEEESCCHHHHHHHH
T ss_pred             ---------------CHHHHHHHHHHHHHhCCCEEEEeccccCH----HHHHHHHHC-CC---EEEcCCcChhhhhhh
Confidence                           34567777777778888776553332222    223444443 43   67775 6 3455554

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.85  E-value=0.21  Score=39.02  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=46.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHH-HHhCCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLE-DALTGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~-~al~~aDiVIi~ag  123 (305)
                      ..+|.|+|+ |.+|...++.+...|.  +++.+|.++. ...+.++-   .. .+.......++. +.....|+|+.+.+
T Consensus        28 g~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~lG---a~-~~i~~~~~~~~~~~~~~~~d~vi~~~~  100 (168)
T d1piwa2          28 GKKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKMG---AD-HYIATLEEGDWGEKYFDTFDLIVVCAS  100 (168)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHHT---CS-EEEEGGGTSCHHHHSCSCEEEEEECCS
T ss_pred             CCEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhccC---Cc-EEeeccchHHHHHhhhcccceEEEEec
Confidence            358999998 9999999988888887  8899998762 22333332   11 111111112222 33467899999877


Q ss_pred             CC
Q 021932          124 VP  125 (305)
Q Consensus       124 ~~  125 (305)
                      ..
T Consensus       101 ~~  102 (168)
T d1piwa2         101 SL  102 (168)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=91.80  E-value=0.066  Score=44.00  Aligned_cols=32  Identities=28%  Similarity=0.221  Sum_probs=29.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      -|+|||| |..|...|..|++.|+  +|+|+|.++
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~--~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGA--NVLLLDKGN   35 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899999 9999999999999998  999999865

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.79  E-value=0.12  Score=43.02  Aligned_cols=35  Identities=26%  Similarity=0.318  Sum_probs=31.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+.+.|+||++-+|..++..|++.|.  .|++.|+++
T Consensus         5 GKvalITGas~GIG~aia~~la~~G~--~V~~~~r~~   39 (248)
T d2o23a1           5 GLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPN   39 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            44677999999999999999999998  899999987

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.76  E-value=0.13  Score=40.61  Aligned_cols=94  Identities=17%  Similarity=0.260  Sum_probs=55.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHHHhC-----CCCEEE
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALT-----GMDIVI  119 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~al~-----~aDiVI  119 (305)
                      ..+|.|+|+ |.+|...++.+...+. ..++..|.++. ...+.++.-    ..+-. ....|+.+.++     +.|+||
T Consensus        29 g~~VlI~G~-G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga----~~~i~-~~~~~~~~~i~~~t~gg~D~vi  101 (174)
T d1f8fa2          29 ASSFVTWGA-GAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGA----THVIN-SKTQDPVAAIKEITDGGVNFAL  101 (174)
T ss_dssp             TCEEEEESC-SHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTC----SEEEE-TTTSCHHHHHHHHTTSCEEEEE
T ss_pred             CCEEEEeCC-CHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCC----eEEEe-CCCcCHHHHHHHHcCCCCcEEE
Confidence            348999998 9999999988887775 36778887652 222333321    11111 11234444432     489999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN  164 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tN  164 (305)
                      .+.|.+               ..+.+.   ++-..|.+.++++..
T Consensus       102 d~~G~~---------------~~~~~~---~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2         102 ESTGSP---------------EILKQG---VDALGILGKIAVVGA  128 (174)
T ss_dssp             ECSCCH---------------HHHHHH---HHTEEEEEEEEECCC
T ss_pred             EcCCcH---------------HHHHHH---HhcccCceEEEEEee
Confidence            998632               222222   222347888888754

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.56  E-value=0.11  Score=43.09  Aligned_cols=72  Identities=21%  Similarity=0.291  Sum_probs=44.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPR  126 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~~  126 (305)
                      -|.|+||++-+|..+|..|++.|.  +|++.|+++.+. ..|+.+.......  .  .....+.....|+++.+||...
T Consensus         3 VvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~~~~-~~d~~~~~~~~~~--~--~~~~~~~~~~id~lv~~Ag~~~   74 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEV-IADLSTAEGRKQA--I--ADVLAKCSKGMDGLVLCAGLGP   74 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSE-ECCTTSHHHHHHH--H--HHHHTTCTTCCSEEEECCCCCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECChHHH-HHHhcCHHHHHHH--H--HHHHHHhCCCCcEEEEcCCCCC
Confidence            346779999999999999999999  999999875211 1222221100000  0  0001122356899999998653

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=91.46  E-value=0.35  Score=40.81  Aligned_cols=114  Identities=23%  Similarity=0.200  Sum_probs=72.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVP  125 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag~~  125 (305)
                      ..||++||-   +  .....+...+.  ++..+|.++..+   |+.             ....++.+..||+||+|+   
T Consensus       122 g~kV~vIG~---~--P~v~~l~~~~~--~~~VlE~~p~~g---d~p-------------~~~~~~lLp~aD~viiTG---  175 (251)
T d2h1qa1         122 GKKVGVVGH---F--PHLESLLEPIC--DLSILEWSPEEG---DYP-------------LPASEFILPECDYVYITC---  175 (251)
T ss_dssp             TSEEEEESC---C--TTHHHHHTTTS--EEEEEESSCCTT---CEE-------------GGGHHHHGGGCSEEEEET---
T ss_pred             CCEEEEEec---c--hhHHHHHhcCC--cEEEEeCCCCCC---CCC-------------chHHHHhhhcCCEEEEEe---
Confidence            459999986   2  44455555565  899999875211   111             123467899999999995   


Q ss_pred             CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEeeehhhHHHHHHHHH
Q 021932          126 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAE  205 (305)
Q Consensus       126 ~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~t~Lds~R~~~~la~  205 (305)
                                    ..++-.-.+.|-+.++++..+++.-|...|.+.+    .+   +.-+.+=|+...|..++.+.+++
T Consensus       176 --------------sTlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~l----f~---~Gv~~lag~~v~d~~~~~~~i~~  234 (251)
T d2h1qa1         176 --------------ASVVDKTLPRLLELSRNARRITLVGPGTPLAPVL----FE---HGLQELSGFMVKDNARAFRIVAG  234 (251)
T ss_dssp             --------------HHHHHTCHHHHHHHTTTSSEEEEESTTCCCCGGG----GG---TTCSEEEEEEESCHHHHHHHHTT
T ss_pred             --------------chhhcCCHHHHHHhCCcCCEEEEECCCcccCHHH----Hh---cCCceEeEEEEeCHHHHHHHHHc
Confidence                          2344455566666787775555566776666532    22   33344556667888888887765


Q ss_pred             H
Q 021932          206 V  206 (305)
Q Consensus       206 ~  206 (305)
                      -
T Consensus       235 G  235 (251)
T d2h1qa1         235 A  235 (251)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.30  E-value=0.079  Score=44.79  Aligned_cols=31  Identities=26%  Similarity=0.336  Sum_probs=28.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      |+|||| |..|.+.|..|++.|+  +|.++|...
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~--~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGL--NVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            789999 9999999999999998  999999755

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=91.25  E-value=0.81  Score=38.02  Aligned_cols=32  Identities=22%  Similarity=0.198  Sum_probs=27.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..|+||++-+|..+|..|+..|.  +|++.|.+.
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   36 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRS   36 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCC
Confidence            34569989999999999999998  899988754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=90.94  E-value=0.31  Score=38.42  Aligned_cols=34  Identities=15%  Similarity=0.076  Sum_probs=29.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+|.|+|| |.||...++.+...|. ..|+.+|.++
T Consensus        30 ~~VlV~Ga-G~iG~~~~~~ak~~Ga-~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGA-GPLGLFGVVIARSLGA-ENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTB-SEEEEEESCH
T ss_pred             CEEEEECC-Cccchhheeccccccc-cccccccccc
Confidence            48999998 9999999998888885 4899999876

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.89  E-value=0.11  Score=42.65  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=30.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+.|+||++-+|..+|..|++.|.  +|++.|+++
T Consensus         3 ~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   35 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARGY--RVVVLDLRR   35 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            678899999999999999999998  999999876

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.77  E-value=0.91  Score=35.60  Aligned_cols=98  Identities=16%  Similarity=0.148  Sum_probs=58.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecC-CCHHH-----HhCCCCEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQ-QQLED-----ALTGMDIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t-~d~~~-----al~~aDiVI  119 (305)
                      .+|.|+|+ |.+|...++.+...|. ..|+..|.++. ...+.++.-.    .+...... ...++     .=.++|+||
T Consensus        30 ~~VlV~G~-G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~~~~~~~~~~G~d~vi  103 (174)
T d1e3ia2          30 STCAVFGL-GCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKALGAT----DCLNPRELDKPVQDVITELTAGGVDYSL  103 (174)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCS----EEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred             CEEEEECC-ChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHhCCC----cccCCccchhhhhhhHhhhhcCCCcEEE
Confidence            48999998 9999999999988885 48899998762 2233333211    11100000 01111     126899999


Q ss_pred             EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCC-cEEEEecCCCCc
Q 021932          120 IPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLISNPVNS  168 (305)
Q Consensus       120 i~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~-aiviv~tNPvd~  168 (305)
                      .+.|.+               ..+.   ..++-..|. +.++++..|.+-
T Consensus       104 e~~G~~---------------~~~~---~a~~~~~~g~G~~v~vG~~~~~  135 (174)
T d1e3ia2         104 DCAGTA---------------QTLK---AAVDCTVLGWGSCTVVGAKVDE  135 (174)
T ss_dssp             ESSCCH---------------HHHH---HHHHTBCTTTCEEEECCCSSSE
T ss_pred             Eecccc---------------hHHH---HHHHHhhcCCeEEEecCCCCCc
Confidence            998743               1122   222333464 788888777553

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.73  E-value=0.6  Score=36.62  Aligned_cols=34  Identities=24%  Similarity=0.188  Sum_probs=29.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+|.|+|+ |.+|...++.+...|. .+|+..|.++
T Consensus        29 ~~VlV~Ga-GgvGl~a~~~ak~~G~-~~Vi~~d~~~   62 (174)
T d1p0fa2          29 STCAVFGL-GGVGFSAIVGCKAAGA-SRIIGVGTHK   62 (174)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCG
T ss_pred             CEEEEECC-CchhHHHHHHHHHcCC-ceeeccCChH
Confidence            48999998 9999999988887775 4899999976

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.45  E-value=0.18  Score=37.02  Aligned_cols=36  Identities=14%  Similarity=0.057  Sum_probs=28.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~   82 (305)
                      |.||+|||+ |++|.-+|..+... ....+|.+++..+
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            459999999 99999999766543 2334999999865

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.36  E-value=0.66  Score=34.27  Aligned_cols=94  Identities=12%  Similarity=0.047  Sum_probs=54.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHH-----hCCCCEEEEcC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA-----LTGMDIVIIPA  122 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~a-----l~~aDiVIi~a  122 (305)
                      +|.|+|. |.+|..++..|.  +.  +++++|.++....  .+.... ..-+.+  ..++. +.     +..|+.+|++.
T Consensus         2 HivI~G~-g~~g~~l~~~L~--~~--~i~vi~~d~~~~~--~~~~~~-~~~i~G--d~~~~-~~L~~a~i~~A~~vi~~~   70 (129)
T d2fy8a1           2 HVVICGW-SESTLECLRELR--GS--EVFVLAEDENVRK--KVLRSG-ANFVHG--DPTRV-SDLEKANVRGARAVIVNL   70 (129)
T ss_dssp             CEEEESC-CHHHHHHHHTSC--GG--GEEEEESCTTHHH--HHHHTT-CEEEES--CTTSH-HHHHHTTCTTCSEEEECC
T ss_pred             EEEEECC-CHHHHHHHHHHc--CC--CCEEEEcchHHHH--HHHhcC-cccccc--ccCCH-HHHHHhhhhcCcEEEEec
Confidence            6899998 999999998874  33  6788888763222  222211 111211  11232 33     47899999874


Q ss_pred             CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEec-CCCC
Q 021932          123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS-NPVN  167 (305)
Q Consensus       123 g~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~t-NPvd  167 (305)
                      ..      +     ..|..    ++..+++.+|+..++.-+ +|-.
T Consensus        71 ~~------d-----~~n~~----~~~~~r~~~~~~~iia~~~~~~~  101 (129)
T d2fy8a1          71 ES------D-----SETIH----CILGIRKIDESVRIIAEAERYEN  101 (129)
T ss_dssp             SS------H-----HHHHH----HHHHHHHHCSSSCEEEECSSGGG
T ss_pred             cc------h-----hhhHH----HHHHHHHHCCCceEEEEEcCHHH
Confidence            21      1     22433    344567788986555554 5543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.28  E-value=0.56  Score=37.61  Aligned_cols=72  Identities=17%  Similarity=0.168  Sum_probs=44.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHHHh------CCCCEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDAL------TGMDIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~al------~~aDiVI  119 (305)
                      .+|.|+|+ |.+|...+..+...+. ..|+..|.++. ...+.++.     ..........++.+.+      .++|++|
T Consensus        27 ~tVlV~Ga-G~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~~G-----a~~~~~~~~~~~~~~i~~~t~g~g~D~vi   99 (195)
T d1kola2          27 STVYVAGA-GPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQG-----FEIADLSLDTPLHEQIAALLGEPEVDCAV   99 (195)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTT-----CEEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhhcc-cceeeecccchhhHhhhhcc-----ccEEEeCCCcCHHHHHHHHhCCCCcEEEE
Confidence            48999998 9999888887777664 48999998752 12222221     1111111123333332      4799999


Q ss_pred             EcCCCC
Q 021932          120 IPAGVP  125 (305)
Q Consensus       120 i~ag~~  125 (305)
                      .+.|.+
T Consensus       100 d~vG~~  105 (195)
T d1kola2         100 DAVGFE  105 (195)
T ss_dssp             ECCCTT
T ss_pred             ECcccc
Confidence            998854

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=90.11  E-value=0.1  Score=44.58  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=27.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHh-----CCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKI-----NPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~-----~~~~~el~L~D~~~   82 (305)
                      -|.|||| |.+|.++|..|++     .|+  +++++|..+
T Consensus         9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~--~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGA-GPAGLMAARVLSEYVRQKPDL--KVRIIDKRS   45 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHHHSTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHhcccccCCC--cEEEEcCCC
Confidence            5899999 9999999999974     578  899999864

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=89.94  E-value=0.48  Score=39.09  Aligned_cols=73  Identities=14%  Similarity=0.211  Sum_probs=39.6

Q ss_pred             CCCCCEEEEEcCCCch----HHHHHHHHHhC-CCCcEEE-EEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhC--C
Q 021932           43 GSPGFKVAVLGAAGGI----GQPLAMLMKIN-PLVSVLH-LYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALT--G  114 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~V----Gs~la~~L~~~-~~~~el~-L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~--~  114 (305)
                      ..+++||+|||+ |..    +......+... +.+ +|+ ++|.+.....  .+...........+   .++++.++  +
T Consensus        13 ~~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~-~ivav~d~~~~~~~--~~~~~~~~~~~~~~---~~~~~l~~~~~   85 (237)
T d2nvwa1          13 SSRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQF-QIVALYNPTLKSSL--QTIEQLQLKHATGF---DSLESFAQYKD   85 (237)
T ss_dssp             GGCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTE-EEEEEECSCHHHHH--HHHHHTTCTTCEEE---SCHHHHHHCTT
T ss_pred             CCCCeEEEEEec-CccccHHHHHHHHHHHhcCCCe-EEEEEEcCCHHHHH--HHHHhcccccceee---cchhhcccccc
Confidence            356689999998 764    44444555543 323 666 7888652211  11111111222323   36766664  6


Q ss_pred             CCEEEEcC
Q 021932          115 MDIVIIPA  122 (305)
Q Consensus       115 aDiVIi~a  122 (305)
                      .|+|+++.
T Consensus        86 iD~V~i~t   93 (237)
T d2nvwa1          86 IDMIVVSV   93 (237)
T ss_dssp             CSEEEECS
T ss_pred             cceeeccC
Confidence            77888874

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=89.85  E-value=0.21  Score=39.80  Aligned_cols=74  Identities=18%  Similarity=0.079  Sum_probs=43.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCCch----hhhhhhcccCC---------ceEEEEecCCCHHHH
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPG----VTADISHMDTN---------AVVRGFLGQQQLEDA  111 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~-L~D~~~~~g----~~~DL~~~~~~---------~~v~~~~~t~d~~~a  111 (305)
                      |.||+|-|- |.+|..+...+..++-. ||+ +-|..+...    ...|..+....         ..+..   ..++.++
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di-~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v---~g~~~~~   75 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDM-KVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEV---AGTVDDM   75 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCC---CEEHHHH
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCc-eEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCccc---CCChhHh
Confidence            469999998 99999999888777754 444 445443211    11111110000         01111   1245677


Q ss_pred             hCCCCEEEEcCCC
Q 021932          112 LTGMDIVIIPAGV  124 (305)
Q Consensus       112 l~~aDiVIi~ag~  124 (305)
                      +.++|+||.|.|.
T Consensus        76 ~~~vDvViEcTG~   88 (171)
T d1cf2o1          76 LDEADIVIDCTPE   88 (171)
T ss_dssp             HHTCSEEEECCST
T ss_pred             hcCCCEEEEccCC
Confidence            8999999999764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.67  E-value=0.14  Score=39.33  Aligned_cols=31  Identities=26%  Similarity=0.295  Sum_probs=26.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ||+|||| |++|..+|..|.. +.  +|.+++...
T Consensus         2 rVvIIGg-G~~G~e~A~~l~~-~~--~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLSQ-TY--EVTVIDKEP   32 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TS--EEEEECSSS
T ss_pred             eEEEECC-cHHHHHHHHHHHc-CC--CEEEEeccc
Confidence            8999999 9999999988854 44  899998643

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=89.63  E-value=0.14  Score=42.56  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=29.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .|.|||| |..|...|..|++.|+  +|.++|.++
T Consensus         6 DViIIGa-G~aGl~aA~~la~~G~--~V~vlEk~~   37 (253)
T d2gqfa1           6 ENIIIGA-GAAGLFCAAQLAKLGK--SVTVFDNGK   37 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             cEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            6999999 9999999999999998  899999876

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.62  E-value=0.13  Score=47.06  Aligned_cols=34  Identities=32%  Similarity=0.555  Sum_probs=30.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .||.|||+ |.+|+.++..|+..|+ .+|.|+|-+.
T Consensus        38 ~kVlvvG~-GglG~ei~k~L~~~Gv-g~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGA-GGLGCELLKNLALSGF-RQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECS-STTHHHHHHHHHTTTC-CCEEEECCCB
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCC
Confidence            48999999 9999999999999997 4899999864

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=89.53  E-value=0.11  Score=41.13  Aligned_cols=33  Identities=24%  Similarity=0.242  Sum_probs=29.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+|+|||+ |..|...|..+++.+.  +++++|...
T Consensus         6 ~dVvIIGG-GpaGl~AA~~~ar~g~--~v~iie~~~   38 (190)
T d1trba1           6 SKLLILGS-GPAGYTAAVYAARANL--QPVLITGME   38 (190)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTTTC--CCEEECCSS
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC--ceEEEEeec
Confidence            48999999 9999999999999998  889998643

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=89.52  E-value=0.25  Score=39.07  Aligned_cols=72  Identities=18%  Similarity=0.191  Sum_probs=44.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHHHh------CCCCEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDAL------TGMDIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~al------~~aDiVI  119 (305)
                      .+|.|+|+ |.||...++.+...|. ..|+..|.++. ...+.++.-    ..+-.. ...++.+.+      +++|+||
T Consensus        29 ~~VlI~Ga-G~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lGa----~~~i~~-~~~~~~~~v~~~t~g~G~D~vi  101 (174)
T d1jqba2          29 SSVVVIGI-GAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYGA----TDILNY-KNGHIEDQVMKLTNGKGVDRVI  101 (174)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHTC----SEEECG-GGSCHHHHHHHHTTTSCEEEEE
T ss_pred             CEEEEEcC-Ccchhhhhhhhhcccc-cccccccchhhhHHHHHhhCc----cccccc-cchhHHHHHHHHhhccCcceEE
Confidence            37999998 9999999988887775 37899998762 222333321    011101 112333332      4599999


Q ss_pred             EcCCCC
Q 021932          120 IPAGVP  125 (305)
Q Consensus       120 i~ag~~  125 (305)
                      .++|.+
T Consensus       102 d~~g~~  107 (174)
T d1jqba2         102 MAGGGS  107 (174)
T ss_dssp             ECSSCT
T ss_pred             EccCCH
Confidence            998754

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.47  E-value=0.28  Score=38.51  Aligned_cols=71  Identities=18%  Similarity=0.200  Sum_probs=43.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      .+|.|.||+|.||...++.+...|.  +++..+.++. ...+.++.   . ..+..+....+....-+++|+||-+.|
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~~~~lG---a-~~~i~~~~~~~~~~~~~g~D~v~d~~G  100 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLALPLALG---A-EEAATYAEVPERAKAWGGLDLVLEVRG  100 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHHHHHTT---C-SEEEEGGGHHHHHHHTTSEEEEEECSC
T ss_pred             CEEEEEeccccchhhhhhhhccccc--ccccccccccccccccccc---c-ceeeehhhhhhhhhccccccccccccc
Confidence            4899999889999999999988897  7787776542 22222221   1 112111100111234478999999865

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.07  E-value=1  Score=33.69  Aligned_cols=87  Identities=17%  Similarity=0.211  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEc
Q 021932           45 PGFKVAVLGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIP  121 (305)
Q Consensus        45 ~~~KI~IIGaa---G~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~  121 (305)
                      .++.|+|||||   |..|..+...|...+ ..+|+.+.....     ++.-      ++.+   .++.+.=...|+++++
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~-----~i~G------~~~y---~sl~dlp~~vDlvvi~   71 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEE-----EVQG------VKAY---KSVKDIPDEIDLAIIV   71 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCS-----EETT------EECB---SSTTSCSSCCSEEEEC
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCcc-----ccCC------eEee---cchhhcCCCCceEEEe
Confidence            45699999997   778888888876554 458888865431     1111      1111   1222222467888887


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI  162 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~  162 (305)
                      .                ..+.+.++++++.+.+-+++++..
T Consensus        72 v----------------p~~~~~~~~~~~~~~g~~~~vi~s   96 (129)
T d2csua1          72 V----------------PKRFVKDTLIQCGEKGVKGVVIIT   96 (129)
T ss_dssp             S----------------CHHHHHHHHHHHHHHTCCEEEECC
T ss_pred             c----------------ChHHhHHHHHHHHHcCCCEEEEec
Confidence            4                245566777777777766665543

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.03  E-value=1.6  Score=31.89  Aligned_cols=82  Identities=10%  Similarity=0.128  Sum_probs=51.8

Q ss_pred             CEEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaa---G~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      ++|+||||+   +..|..+...|+..|+  +|+.+..+.  ..   +.-      ++.+   .++.+.=...|+++++. 
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~--~V~pVnP~~--~~---i~G------~~~y---~sl~~lp~~~D~vvi~v-   64 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNY--DE---IEG------LKCY---RSVRELPKDVDVIVFVV-   64 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTC--SE---ETT------EECB---SSGGGSCTTCCEEEECS-
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCC--EEEEEcccc--cc---ccC------cccc---ccchhccccceEEEEEe-
Confidence            489999986   4678888999999999  888876432  11   111      1111   13322224569999874 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEE
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN  160 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aivi  160 (305)
                                     ..+.+.++++++.+.+++++++
T Consensus        65 ---------------p~~~~~~~l~~~~~~g~k~v~~   86 (116)
T d1y81a1          65 ---------------PPKVGLQVAKEAVEAGFKKLWF   86 (116)
T ss_dssp             ---------------CHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ---------------CHHHHHHHHHHHHhcCCceEEe
Confidence                           2455666677777777776543

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.80  E-value=0.14  Score=40.75  Aligned_cols=33  Identities=15%  Similarity=0.230  Sum_probs=29.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+|+|||+ |..|...|..+++.++  +++++|...
T Consensus         6 ~~VvIIGg-GpaGl~aA~~~ar~g~--~v~vie~~~   38 (192)
T d1vdca1           6 TRLCIVGS-GPAAHTAAIYAARAEL--KPLLFEGWM   38 (192)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CCEEECCSS
T ss_pred             ceEEEECC-CHHHHHHHHHHHHcCC--cEEEEEeec
Confidence            59999999 9999999999999998  788888543

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.80  E-value=0.098  Score=39.54  Aligned_cols=87  Identities=14%  Similarity=0.156  Sum_probs=51.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCCHHHHh-CCCCEEEEcCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDAL-TGMDIVIIPAG  123 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~~al-~~aDiVIi~ag  123 (305)
                      +.+|+|+|| |..|..++..+....-..-+.++|.++ ..|...        ..+..+. ..++++.. +..++++++..
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I--------~Gi~V~~-~~~l~~~~~~~i~iai~~i~   72 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRPV--------RGGVIEH-VDLLPQRVPGRIEIALLTVP   72 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEE--------TTEEEEE-GGGHHHHSTTTCCEEEECSC
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEE--------CCEEEec-HHHHHHHHhhcccEEEEeCC
Confidence            458999999 999999987665444345778899876 333221        1122221 23443333 34556566531


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcE
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI  158 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~ai  158 (305)
                                      ..-.+++++.+.+++-+++
T Consensus        73 ----------------~~~~~~I~d~l~~~gIk~I   91 (126)
T d2dt5a2          73 ----------------REAAQKAADLLVAAGIKGI   91 (126)
T ss_dssp             ----------------HHHHHHHHHHHHHHTCCEE
T ss_pred             ----------------HHHHHHHHHHHHHcCCCEE
Confidence                            1234667778888875554

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=88.26  E-value=0.36  Score=37.26  Aligned_cols=33  Identities=18%  Similarity=0.228  Sum_probs=27.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~   80 (305)
                      .+|+|||+ |++|.-+|..|...+.-..|.+.+.
T Consensus         4 ~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           4 DNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence            48999999 9999999999999887445665554

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.21  E-value=0.56  Score=36.52  Aligned_cols=71  Identities=15%  Similarity=0.177  Sum_probs=44.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHh------CCCCEEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDAL------TGMDIVII  120 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al------~~aDiVIi  120 (305)
                      .+|.|.||+|.||...++.+...|.  +++..+.++.  . .|+........+.. ....|+.+.+      ++.|+|+-
T Consensus        27 ~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~--~-~~~l~~~Ga~~vi~-~~~~~~~~~v~~~t~~~g~d~v~d  100 (183)
T d1pqwa_          27 ERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDA--K-REMLSRLGVEYVGD-SRSVDFADEILELTDGYGVDVVLN  100 (183)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHH--H-HHHHHTTCCSEEEE-TTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred             CEEEEECCCCCcccccchhhccccc--cceeeecccc--c-cccccccccccccc-CCccCHHHHHHHHhCCCCEEEEEe
Confidence            4899999989999999998888887  7777665431  1 12222111112221 1233555555      57999999


Q ss_pred             cCC
Q 021932          121 PAG  123 (305)
Q Consensus       121 ~ag  123 (305)
                      +.|
T Consensus       101 ~~g  103 (183)
T d1pqwa_         101 SLA  103 (183)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            875

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=87.92  E-value=0.23  Score=39.85  Aligned_cols=32  Identities=13%  Similarity=0.074  Sum_probs=29.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      -|+|||| |+.|.+.|..+++.|.  +++++|.++
T Consensus         4 DvvVIG~-G~aG~~aA~~a~~~G~--kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGG-GSGGIASINRAAMYGQ--KCALIEAKE   35 (217)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            4899999 9999999999999998  899999765

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=87.91  E-value=0.2  Score=42.10  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=28.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~-~~~~el~L~D~~~   82 (305)
                      -|+|||| |..|...|..|+++ |+  +++++|..+
T Consensus        35 DViVIGa-GpaGL~aA~~LA~~~G~--~V~vlE~~~   67 (278)
T d1rp0a1          35 DVVVVGA-GSAGLSAAYEISKNPNV--QVAIIEQSV   67 (278)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSTTS--CEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHccCC--eEEEEecCC
Confidence            5999999 99999999999874 88  999999865

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=87.88  E-value=0.22  Score=38.85  Aligned_cols=37  Identities=27%  Similarity=0.218  Sum_probs=28.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      |+||+|+|++|.+|......+.+.+---+|+.+--+.
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~   38 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR   38 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence            5699999999999999988887764322666665443

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.85  E-value=0.34  Score=37.03  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=24.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~   80 (305)
                      ||+|+|++|.+|+.++..+...+-..=+..+|.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~   33 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA   33 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            799999999999999988776654322334554

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=87.65  E-value=1.1  Score=33.84  Aligned_cols=115  Identities=11%  Similarity=0.013  Sum_probs=65.8

Q ss_pred             CEEEEEcCCC---chHHHHHHHHHhCCCCcEEEEEeCCCCchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEEcCC
Q 021932           47 FKVAVLGAAG---GIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAG  123 (305)
Q Consensus        47 ~KI~IIGaaG---~VGs~la~~L~~~~~~~el~L~D~~~~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi~ag  123 (305)
                      +.|+|||||-   ..|..++..|...|+  .++++-.+.....   +..      ...+   .++.+.=...|+|+++. 
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~--~~~~v~~~~~~~~---i~g------~~~~---~~l~~i~~~iD~v~v~~-   78 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQGY--RVLPVNPRFQGEE---LFG------EEAV---ASLLDLKEPVDILDVFR-   78 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTC--EEEEECGGGTTSE---ETT------EECB---SSGGGCCSCCSEEEECS-
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcCCC--CceEEEeccccce---eec------eecc---cchhhccCCCceEEEec-
Confidence            4899999963   578888889999999  8888876431111   111      1111   23323225679999974 


Q ss_pred             CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCCccHHHHHHHHHHhCCCCCCcEEEe-e-ehhhHHH
Q 021932          124 VPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-T-MLDVVRA  199 (305)
Q Consensus       124 ~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd~lt~~~~~~~~~~s~~p~~kviG~-t-~Lds~R~  199 (305)
                                     +.+.+.++++++.+.+.+++++...--.+-    +.+.+++ .|+   ++|+= | .++..||
T Consensus        79 ---------------p~~~v~~~v~~~~~~g~k~i~~q~G~~~~e----~~~~a~~-~Gi---~vV~~~C~~ie~~rl  133 (136)
T d1iuka_          79 ---------------PPSALMDHLPEVLALRPGLVWLQSGIRHPE----FEKALKE-AGI---PVVADRCLMVEHKRL  133 (136)
T ss_dssp             ---------------CHHHHTTTHHHHHHHCCSCEEECTTCCCHH----HHHHHHH-TTC---CEEESCCHHHHHHHH
T ss_pred             ---------------cHHHHHHHHHHHHhhCCCeEEEecCccCHH----HHHHHHH-cCC---EEEcCCccHHHHHHh
Confidence                           234455666666677777766533222221    2233343 354   67764 6 3555554

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.59  E-value=0.35  Score=35.44  Aligned_cols=36  Identities=17%  Similarity=0.073  Sum_probs=28.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~-~~el~L~D~~~   82 (305)
                      +.+|+|||| |++|.-+|..+...+. ..+|.+++..+
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            359999999 9999999976664432 24899999765

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.10  E-value=0.27  Score=39.45  Aligned_cols=32  Identities=16%  Similarity=0.135  Sum_probs=29.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      =|+|||+ |.-|.+.|..+++.|.  +++++|..+
T Consensus         7 DviVIG~-GpAGl~aA~~aa~~G~--kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGG-GPAGYVAAIKAAQLGF--NTACVEKRG   38 (233)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            5899999 9999999999999998  999999765

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=87.10  E-value=0.25  Score=38.63  Aligned_cols=34  Identities=18%  Similarity=0.178  Sum_probs=27.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~   80 (305)
                      +.||+|||+ |++|..+|..|.+.+.-.+|+++..
T Consensus         3 ~a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           3 KAPVVVLGA-GLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             CSSEEEECC-SHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CCCEEEECc-cHHHHHHHHHHHhcCCceEEEEEec
Confidence            347999999 9999999999988876446666543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.96  E-value=0.93  Score=34.87  Aligned_cols=72  Identities=21%  Similarity=0.199  Sum_probs=44.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHHHh------CCCCEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDAL------TGMDIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~al------~~aDiVI  119 (305)
                      .+|.|+|++|.+|...+..+...+.. +|+..|.++. ...+.++.   .. .+-. ....|+.+.+      ++.|+||
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~-~V~~~~~~~~~~~~~~~~G---a~-~~i~-~~~~~~~~~~~~~~~~~~~d~vi  102 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRAG---AD-YVIN-ASMQDPLAEIRRITESKGVDAVI  102 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHHT---CS-EEEE-TTTSCHHHHHHHHTTTSCEEEEE
T ss_pred             CEEEEEeccccceeeeeecccccccc-cccccccchhhHHHHHHcC---Cc-eeec-cCCcCHHHHHHHHhhcccchhhh
Confidence            48999997799999988888877653 8999998752 12222221   11 1111 1122333333      4689999


Q ss_pred             EcCCC
Q 021932          120 IPAGV  124 (305)
Q Consensus       120 i~ag~  124 (305)
                      .++|.
T Consensus       103 d~~g~  107 (170)
T d1jvba2         103 DLNNS  107 (170)
T ss_dssp             ESCCC
T ss_pred             ccccc
Confidence            99763

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.46  E-value=0.26  Score=43.84  Aligned_cols=32  Identities=28%  Similarity=0.379  Sum_probs=28.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHh------CCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKI------NPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~------~~~~~el~L~D~~~   82 (305)
                      =|+|||| |.-|++.|..|++      .|+  +|+|+|...
T Consensus        34 DViIVGg-GPAGlsaA~~LA~l~~~~~~Gl--~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGA-GPAGLSAATRLKQLAAQHEKDL--RVCLVEKAA   71 (380)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHHHHTTCCC--CEEEECSSS
T ss_pred             CEEEECC-CHHHHHHHHHHHhhhhhhcCCC--EEEEEcCCC
Confidence            5999999 9999999999987      788  999999864

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.40  E-value=0.36  Score=36.43  Aligned_cols=33  Identities=15%  Similarity=0.107  Sum_probs=27.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHh----CCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~----~~~~~el~L~D~~~   82 (305)
                      .+|+|||| |++|.-+|..|..    .+.  +|.+++..+
T Consensus        38 k~i~IvGg-G~~G~E~A~~l~~~~~~~g~--~Vt~i~~~~   74 (137)
T d1m6ia2          38 KSITIIGG-GFLGSELACALGRKARALGT--EVIQLFPEK   74 (137)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHHHHhcCC--EEEEecccc
Confidence            49999999 9999999887753    355  999998865

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=86.25  E-value=0.25  Score=39.48  Aligned_cols=32  Identities=16%  Similarity=0.111  Sum_probs=29.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      =|.|||+ |..|.+.|..+++.|.  +++++|..+
T Consensus         5 DvvVIGg-GpaGl~aA~~aa~~G~--kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGG-GPGGYVAAIKAAQLGF--KTTCIEKRG   36 (221)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            4889999 9999999999999998  999999765

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.85  E-value=0.31  Score=41.20  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=29.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      -|.|||+ |..|.+.|..|++.|.  +|+|+|...
T Consensus        18 DVlVIG~-G~aGl~aA~~la~~G~--~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGS-GGAGFSAAISATDSGA--KVILIEKEP   49 (308)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            4899999 9999999999999998  899999865

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.83  E-value=1.4  Score=38.20  Aligned_cols=105  Identities=15%  Similarity=0.178  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhhh----hhhcccCCceEEEEecCCCHHHHh----CCC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA----DISHMDTNAVVRGFLGQQQLEDAL----TGM  115 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~----DL~~~~~~~~v~~~~~t~d~~~al----~~a  115 (305)
                      .++||.|||+ |. | .++..++...-..+|.++|+++ ....+.    ........++++.+.+  |-.+-+    +.-
T Consensus       106 ~pk~VLIiGg-G~-G-~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~--Da~~~l~~~~~~y  180 (312)
T d2b2ca1         106 DPKRVLIIGG-GD-G-GILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCG--DGFEFLKNHKNEF  180 (312)
T ss_dssp             SCCEEEEESC-TT-S-HHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECS--CHHHHHHHCTTCE
T ss_pred             CCCeEEEeCC-Cc-h-HHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEc--hHHHHHHhCCCCC
Confidence            3559999998 63 3 3444555555556999999987 111111    1111112467776532  333333    347


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEec
Q 021932          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLIS  163 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~t  163 (305)
                      |+||+-.-.|.  +..       ..-..+++.+.+++. .|+++++.=+
T Consensus       181 DvII~D~~dp~--~~~-------~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         181 DVIITDSSDPV--GPA-------ESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             EEEEECCC----------------------HHHHHHHHEEEEEEEEEEC
T ss_pred             CEEEEcCCCCC--Ccc-------hhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            99998643331  111       112234445555544 4899876544

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=85.68  E-value=0.3  Score=37.81  Aligned_cols=30  Identities=20%  Similarity=0.279  Sum_probs=27.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~   80 (305)
                      -|+|||| |..|...|..+.+.|.  +++++|.
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~--~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGI--RTGLMGE   32 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEECS
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCC--eEEEEEE
Confidence            4899999 9999999999999998  8888885

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=85.02  E-value=0.62  Score=39.15  Aligned_cols=39  Identities=18%  Similarity=0.110  Sum_probs=32.8

Q ss_pred             CCCCCCEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           42 GGSPGFKVAVLGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        42 ~~~~~~KI~IIGaaG--~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ++-+.+++.|+||+|  -+|..+|..|++.|.  +|++.|.++
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga--~Vvi~~~~~   44 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGA--EILVGTWVP   44 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTC--EEEEEEEHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            455667999999966  599999999999998  899998753

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.99  E-value=1.1  Score=38.07  Aligned_cols=76  Identities=14%  Similarity=0.216  Sum_probs=41.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhhh---hhh-------cccCCceEEEEecCC-CHHHH
Q 021932           44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA---DIS-------HMDTNAVVRGFLGQQ-QLEDA  111 (305)
Q Consensus        44 ~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~---DL~-------~~~~~~~v~~~~~t~-d~~~a  111 (305)
                      .++.+|.|+|+ |. |.. +..++..+. .+|.++|+++ ....+.   .+.       .....++++.+.+.. .+-+.
T Consensus        71 ~~p~~vLiiG~-G~-G~~-~~~~l~~~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~  146 (276)
T d1mjfa_          71 PKPKRVLVIGG-GD-GGT-VREVLQHDV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN  146 (276)
T ss_dssp             SCCCEEEEEEC-TT-SHH-HHHHTTSCC-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred             CCCceEEEecC-Cc-hHH-HHHHHHhCC-ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc
Confidence            34569999998 63 333 344445554 5899999987 111111   111       111246777654221 11122


Q ss_pred             hCCCCEEEEcCC
Q 021932          112 LTGMDIVIIPAG  123 (305)
Q Consensus       112 l~~aDiVIi~ag  123 (305)
                      -+.-|+||+-.-
T Consensus       147 ~~~yDvIi~D~~  158 (276)
T d1mjfa_         147 NRGFDVIIADST  158 (276)
T ss_dssp             CCCEEEEEEECC
T ss_pred             cCCCCEEEEeCC
Confidence            367899998553

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.78  E-value=1.2  Score=34.52  Aligned_cols=73  Identities=11%  Similarity=0.094  Sum_probs=42.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--Cchhhh-hhhccc--CCceEEEEecCCCHHHHhCCCCEEE
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTA-DISHMD--TNAVVRGFLGQQQLEDALTGMDIVI  119 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~-DL~~~~--~~~~v~~~~~t~d~~~al~~aDiVI  119 (305)
                      +..||+++|-...|-.+++.++...|.  +++++-...  ...... ++....  ....+..   +.|..++++++|+|.
T Consensus         3 ~gl~I~~vGD~~nV~~Sli~~~~~~g~--~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~---~~d~~~~~~~advi~   77 (170)
T d1otha2           3 KGLTLSWIGDGNNILHSIMMSAAKFGM--HLQAATPKGYEPDASVTKLAEQYAKENGTKLLL---TNDPLEAAHGGNVLI   77 (170)
T ss_dssp             TTCEEEEESCSSHHHHHHHTTTGGGTC--EEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE---ESCHHHHHTTCSEEE
T ss_pred             CCCEEEEEcCchhHHHHHHHHHHHcCC--EEEEEeccccCCchHHHHHHHHHHhccCCEEEE---EcCHHHHHhhhhhee
Confidence            456999999833444444444445566  888877644  111111 111110  1344554   357889999999998


Q ss_pred             EcC
Q 021932          120 IPA  122 (305)
Q Consensus       120 i~a  122 (305)
                      ...
T Consensus        78 ~~~   80 (170)
T d1otha2          78 TDT   80 (170)
T ss_dssp             ECC
T ss_pred             eec
Confidence            864

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=84.68  E-value=0.42  Score=38.64  Aligned_cols=32  Identities=25%  Similarity=0.269  Sum_probs=29.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      =|+|||+ |..|.+.|..+++.|.  +++++|..+
T Consensus         8 DviIIG~-GPaGlsaA~~aa~~G~--~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGG-GPGGYSAAFAAADEGL--KVAIVERYK   39 (229)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            4899999 9999999999999998  999999765

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.57  E-value=0.57  Score=36.04  Aligned_cols=95  Identities=17%  Similarity=0.216  Sum_probs=56.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-CchhhhhhhcccCCceEEEEecCCCHHHH----hCCCCEEEEc
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDA----LTGMDIVIIP  121 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~t~d~~~a----l~~aDiVIi~  121 (305)
                      .+|.|+|+ |.+|...++.+...|.  +++.+|.++ ....+.++.-    ..+-. ....+..+.    ..+.|.+|++
T Consensus        29 ~~VlV~Ga-G~vG~~~~~~ak~~G~--~Vi~~~~~~~~~~~a~~~Ga----~~~i~-~~~~~~~~~~~~~~~g~~~~i~~  100 (166)
T d1llua2          29 QWVAISGI-GGLGHVAVQYARAMGL--HVAAIDIDDAKLELARKLGA----SLTVN-ARQEDPVEAIQRDIGGAHGVLVT  100 (166)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTC----SEEEE-TTTSCHHHHHHHHHSSEEEEEEC
T ss_pred             CEEEEeec-cccHHHHHHHHHHcCC--ccceecchhhHHHhhhccCc----ccccc-ccchhHHHHHHHhhcCCcccccc
Confidence            48999998 9999999999998885  899999876 2223333321    11111 112233333    3566777777


Q ss_pred             CCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 021932          122 AGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN  167 (305)
Q Consensus       122 ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~~p~aiviv~tNPvd  167 (305)
                      .+.+               +.+.+   .++-..|.+.++++..|-+
T Consensus       101 ~~~~---------------~~~~~---~~~~l~~~G~iv~~G~~~~  128 (166)
T d1llua2         101 AVSN---------------SAFGQ---AIGMARRGGTIALVGLPPG  128 (166)
T ss_dssp             CSCH---------------HHHHH---HHTTEEEEEEEEECCCCSS
T ss_pred             cccc---------------hHHHH---HHHHhcCCcEEEEEEecCC
Confidence            6422               11222   3333347888888865543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=84.45  E-value=1.5  Score=33.75  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=28.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+|.|+|+ |-+|...+..++..+. .+|+..|.++
T Consensus        30 dtVlV~Ga-GG~G~~~~~~~~~~g~-~~Vi~~~~~~   63 (176)
T d2jhfa2          30 STCAVFGL-GGVGLSVIMGCKAAGA-ARIIGVDINK   63 (176)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCG
T ss_pred             CEEEEECC-CCcHHHHHHHHHHcCC-ceEEeecCcH
Confidence            48999999 8899999888887764 3899999876

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=84.18  E-value=1  Score=34.78  Aligned_cols=70  Identities=17%  Similarity=0.098  Sum_probs=45.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-chhhhhhhcccCCceEEEEecCCCHHHHh------CCCCEEE
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDAL------TGMDIVI  119 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~t~d~~~al------~~aDiVI  119 (305)
                      .+|.|+||+|.+|...++.+...|.  +++..|.++. ...+.++.   . ..+-.. ...|+.+.+      ++.|+|+
T Consensus        30 ~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~lG---a-~~vi~~-~~~d~~~~v~~~t~g~g~d~v~  102 (179)
T d1qora2          30 EQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKAG---A-WQVINY-REEDLVERLKEITGGKKVRVVY  102 (179)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHT---C-SEEEET-TTSCHHHHHHHHTTTCCEEEEE
T ss_pred             CEEEEEccccccchHHHHHHHHhCC--eEeecccchHHHHHHHhcC---C-eEEEEC-CCCCHHHHHHHHhCCCCeEEEE
Confidence            4899999988899999999888887  8999988652 22222222   1 122111 234555544      4678888


Q ss_pred             EcCC
Q 021932          120 IPAG  123 (305)
Q Consensus       120 i~ag  123 (305)
                      -+.|
T Consensus       103 d~~g  106 (179)
T d1qora2         103 DSVG  106 (179)
T ss_dssp             ECSC
T ss_pred             eCcc
Confidence            8865

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.10  E-value=0.89  Score=38.99  Aligned_cols=107  Identities=19%  Similarity=0.252  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhhh---h-hhcccCCceEEEEecCCCHHHHh----C-C
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA---D-ISHMDTNAVVRGFLGQQQLEDAL----T-G  114 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~~---D-L~~~~~~~~v~~~~~t~d~~~al----~-~  114 (305)
                      ++.||.|+|+ |.  ..++..++...-..+|.++|+++ ....+.   . .......++++.+.+  |-.+-+    + .
T Consensus        80 ~pk~VLiiGg-G~--G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~--Da~~~l~~~~~~~  154 (290)
T d1xj5a_          80 NPKKVLVIGG-GD--GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIG--DGVAFLKNAAEGS  154 (290)
T ss_dssp             CCCEEEEETC-SS--SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEES--CHHHHHHTSCTTC
T ss_pred             CCcceEEecC-Cc--hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEc--cHHHHHhhccccC
Confidence            3559999998 63  33445555565556999999987 111111   1 111112566776532  211222    2 4


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEe-cCC
Q 021932          115 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLI-SNP  165 (305)
Q Consensus       115 aDiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~-tNP  165 (305)
                      -|+||+-.-.|.  +.. ..++      .++..+.+++. .|+++++.= .+|
T Consensus       155 yDvIi~D~~dp~--~~~-~~L~------t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         155 YDAVIVDSSDPI--GPA-KELF------EKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             EEEEEECCCCTT--SGG-GGGG------SHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             ccEEEEcCCCCC--Ccc-hhhC------CHHHHHHHHHhcCCCcEEEEecCCc
Confidence            789888543332  211 1121      23344444433 488886543 455

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=84.06  E-value=0.58  Score=36.42  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=27.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~   81 (305)
                      |+||+|.|++|++|......+.+.+---+|+.+--+
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~   36 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG   36 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEec
Confidence            458999999999999998888777532266666544

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.82  E-value=0.5  Score=38.17  Aligned_cols=33  Identities=9%  Similarity=0.054  Sum_probs=29.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~   81 (305)
                      .++|||| |+.|..+|..|.+.+...+|.+++..
T Consensus         6 ~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e   38 (213)
T d1m6ia1           6 PFLLIGG-GTAAFAAARSIRARDPGARVLIVSED   38 (213)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred             CEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            6889999 99999999999888877799999864

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.53  E-value=0.38  Score=38.61  Aligned_cols=33  Identities=15%  Similarity=0.068  Sum_probs=29.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        47 ~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ..|.|||+ |..|...|..+++.|.  ++.|+|.+.
T Consensus         6 ~DlvVIG~-GpaGl~aA~~aa~~G~--~V~liE~~~   38 (220)
T d1lvla1           6 TTLLIIGG-GPGGYVAAIRAGQLGI--PTVLVEGQA   38 (220)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            36899999 9999999999999998  999999765

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.15  E-value=1.3  Score=37.89  Aligned_cols=104  Identities=13%  Similarity=0.150  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Cchhh---hhhhcc-cCCceEEEEecCCCHHHHhC----CC
Q 021932           45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT---ADISHM-DTNAVVRGFLGQQQLEDALT----GM  115 (305)
Q Consensus        45 ~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~-~~g~~---~DL~~~-~~~~~v~~~~~t~d~~~al~----~a  115 (305)
                      .+++|.|+|+ |. | .++..++...-..++.++|+++ ....+   .+..+. ...++++.+.+  |-.+-++    .-
T Consensus        78 ~pk~vLiiGg-G~-G-~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~--Da~~~l~~~~~~y  152 (285)
T d2o07a1          78 NPRKVLIIGG-GD-G-GVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVG--DGFEFMKQNQDAF  152 (285)
T ss_dssp             SCCEEEEEEC-TT-S-HHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES--CHHHHHHTCSSCE
T ss_pred             CcCeEEEeCC-Cc-h-HHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEc--cHHHHHhcCCCCC
Confidence            4569999998 63 2 3445555655456999999987 11111   111111 12467776532  3334343    46


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCcEEEEe
Q 021932          116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLI  162 (305)
Q Consensus       116 DiVIi~ag~~~~~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~aiviv~  162 (305)
                      |+||+-.-.|.  +..       ..-..++..+.+++. .|+|+++.-
T Consensus       153 DvIi~D~~~p~--~~~-------~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         153 DVIITDSSDPM--GPA-------ESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             EEEEEECC--------------------CHHHHHHHHHEEEEEEEEEE
T ss_pred             CEEEEcCCCCC--Ccc-------cccccHHHHHHHHHhcCCCCeEEEe
Confidence            99998643232  111       112233445555544 488886543

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.14  E-value=0.55  Score=37.35  Aligned_cols=31  Identities=16%  Similarity=0.033  Sum_probs=28.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      |.|||+ |..|.+.|..+++.|.  +++++|...
T Consensus         6 viIIG~-GpaG~~aA~~aar~G~--kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIGG-GSGGLASARRAAELGA--RAAVVESHK   36 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            789999 9999999999999998  999999765

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=83.10  E-value=1.6  Score=33.25  Aligned_cols=71  Identities=21%  Similarity=0.280  Sum_probs=45.8

Q ss_pred             CCCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           45 PGFKVAVLGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaa--G~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      +..||+++|=-  +.|..+++..+...|.  +++++-...  ......+.... ....+..   +.|++++++++|+|..
T Consensus         3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~-~~~~~~~---~~d~~~av~~aDvvy~   76 (157)
T d1ml4a2           3 DGLKIGLLGDLKYGRTVHSLAEALTFYDV--ELYLISPELLRMPRHIVEELRE-KGMKVVE---TTTLEDVIGKLDVLYV   76 (157)
T ss_dssp             SSEEEEEESCTTTCHHHHHHHHHGGGSCE--EEEEECCGGGCCCHHHHHHHHH-TTCCEEE---ESCTHHHHTTCSEEEE
T ss_pred             CCCEEEEEcCCccChHHHHHHHHHHhcCC--cEEEEccchhhcchHHHHHHHh-hccccee---ecCHHHhhccCcEEEe
Confidence            34699999972  5688888888887786  888876543  12221211111 1233443   2477899999998877


Q ss_pred             c
Q 021932          121 P  121 (305)
Q Consensus       121 ~  121 (305)
                      .
T Consensus        77 ~   77 (157)
T d1ml4a2          77 T   77 (157)
T ss_dssp             C
T ss_pred             e
Confidence            6

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=82.97  E-value=0.52  Score=33.92  Aligned_cols=34  Identities=15%  Similarity=0.159  Sum_probs=25.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      .+||+|||+ |.-|.-+|..|+.  .+..+++.-...
T Consensus        32 gK~VlVVG~-g~Sa~dia~~l~~--~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGG-ASSANDLVRHLTP--VAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECS-SHHHHHHHHHHTT--TSCSSEEEECTT
T ss_pred             CCeEEEECC-CCCHHHHHHHHHH--hcCEEEEEEecC
Confidence            458999999 9999999988864  444656665543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.92  E-value=0.42  Score=38.58  Aligned_cols=32  Identities=19%  Similarity=0.205  Sum_probs=28.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      =|.|||| |..|.+.|..+++.|+  +++++|..+
T Consensus         5 DviVIG~-GpaGl~aA~~aa~~G~--kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGG-GSGGLAAAKEAAKFDK--KVMVLDFVT   36 (235)
T ss_dssp             EEEEECC-SHHHHHHHHHHGGGCC--CEEEECCCC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            3789999 9999999999999999  999999643

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=82.86  E-value=2  Score=32.97  Aligned_cols=73  Identities=12%  Similarity=0.115  Sum_probs=44.4

Q ss_pred             CCCEEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCEEEE
Q 021932           45 PGFKVAVLGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVII  120 (305)
Q Consensus        45 ~~~KI~IIGaaG~--VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDiVIi  120 (305)
                      +..||+++|=..+  |..+++..+...+. .++++.-...  ......+..+.. ...+..   +.|+++++++||+|..
T Consensus         3 ~gl~i~~vGD~~nsrv~~Sli~~l~~~~~-~~~~~~~P~~~~~~~~~~~~~~~~-~~~~~~---~~d~~~a~~~aDvvy~   77 (160)
T d1ekxa2           3 DNLHVAMVGDLKYGRTVHSLTQALAKFDG-NRFYFIAPDALAMPQYILDMLDEK-GIAWSL---HSSIEEVMAEVDILYM   77 (160)
T ss_dssp             SSCEEEEESCTTTCHHHHHHHHHHTTSSS-CEEEEECCGGGCCCHHHHHHHHHT-TCCEEE---CSCSTTTGGGCSEEEE
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHHHHcCC-CeEEeeccchhhhhHHHHHHHhhh-cccccc---ccCHHHHhCcCceEEe
Confidence            3569999997333  88888777766653 2666665433  222223333322 234443   3577899999999886


Q ss_pred             cC
Q 021932          121 PA  122 (305)
Q Consensus       121 ~a  122 (305)
                      +-
T Consensus        78 ~~   79 (160)
T d1ekxa2          78 TR   79 (160)
T ss_dssp             CC
T ss_pred             ec
Confidence            53

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=82.48  E-value=0.5  Score=40.23  Aligned_cols=32  Identities=22%  Similarity=0.326  Sum_probs=29.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      =|.|||+ |..|.+.|..|++.|+  +|+|++...
T Consensus        25 DVvVIG~-G~aGl~aA~~la~~G~--~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGS-GGAGLAAAVSARDAGA--KVILLEKEP   56 (322)
T ss_dssp             SEEEECS-SHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             eEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899999 9999999999999998  899999765

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.21  E-value=0.63  Score=36.83  Aligned_cols=32  Identities=22%  Similarity=0.139  Sum_probs=28.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      -|.|||+ |..|.+.|..+++.|.  +++++|...
T Consensus         5 DviVIG~-GpaGl~aA~~aar~G~--kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGA-GPGGYVAAIRAAQLGQ--KVTIVEKGN   36 (223)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEecCC
Confidence            4789999 9999999999999998  999999765

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.13  E-value=0.46  Score=37.68  Aligned_cols=32  Identities=28%  Similarity=0.204  Sum_probs=28.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      =|.|||+ |.-|.+.|..+++.|.  +++++|..+
T Consensus         5 DviIIGg-GpAGl~aA~~aar~G~--~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGA-GPGGYVAAIKSAQLGL--KTALIEKYK   36 (229)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEEECCB
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeccc
Confidence            4889999 9999999999999998  899999643

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=81.11  E-value=0.58  Score=40.39  Aligned_cols=30  Identities=13%  Similarity=0.133  Sum_probs=27.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 021932           48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV   80 (305)
Q Consensus        48 KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~   80 (305)
                      -|.|||+ |+-|..+|..|++.|+  .|++++.
T Consensus         4 ~VIVVGs-G~aG~v~A~rLaeaG~--~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGT-GYGAAVSALRLGEAGV--QTLMLEM   33 (367)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEES
T ss_pred             eEEEeCc-CHHHHHHHHHHHHCcC--eEEEEec
Confidence            3889998 9999999999999998  8999987

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=80.74  E-value=0.72  Score=39.93  Aligned_cols=75  Identities=15%  Similarity=0.168  Sum_probs=44.9

Q ss_pred             CCCCCCEEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEeCCC--CchhhhhhhcccCCceEEEEecCCCHHHHhCCCCE
Q 021932           42 GGSPGFKVAVLGA--AGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDI  117 (305)
Q Consensus        42 ~~~~~~KI~IIGa--aG~VGs~la~~L~~~~~~~el~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~t~d~~~al~~aDi  117 (305)
                      ++.+..||+++|-  .+.|..+++..+...+. .+++++-...  ......+..+.. ...+..+   .|.++++++||+
T Consensus       150 g~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~-~~~~i~~P~~~~~~~~~~~~~~~~-~~~~~~~---~d~~~a~~~aDv  224 (310)
T d1tuga1         150 GRLDNLHVAMVGDLKYGRTVHSLTQALAKFDG-NRFYFIAPDALAMPQYILDMLDEK-GIAWSLH---SSIEEVMAEVDI  224 (310)
T ss_dssp             SCSSSCEEEEESCTTTCHHHHHHHHHHTTSSS-CEEEEECCGGGCCCHHHHHHHHTT-TCCEEEE---SCGGGTTTTCSE
T ss_pred             CCcccceEEEEeccccCcchHHHHHHHHhccC-ceEEEeCCcccccchhcccccccc-cceeeee---echhhhccCCce
Confidence            4456679999996  24566666655554431 2788876543  222233333322 2344443   467899999999


Q ss_pred             EEEc
Q 021932          118 VIIP  121 (305)
Q Consensus       118 VIi~  121 (305)
                      |..+
T Consensus       225 vy~~  228 (310)
T d1tuga1         225 LYMT  228 (310)
T ss_dssp             EEEC
T ss_pred             eeec
Confidence            8875

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=80.67  E-value=0.72  Score=38.06  Aligned_cols=31  Identities=19%  Similarity=0.197  Sum_probs=28.7

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        49 I~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      +.|||+ |..|...|..+++.|.  ++.|+|.+.
T Consensus         4 viVIG~-G~aG~~aA~~aa~~G~--~V~liE~~~   34 (259)
T d1onfa1           4 LIVIGG-GSGGMAAARRAARHNA--KVALVEKSR   34 (259)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--eEEEEecCC
Confidence            789999 9999999999999998  999999765

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=80.49  E-value=2.2  Score=33.15  Aligned_cols=35  Identities=23%  Similarity=0.221  Sum_probs=29.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 021932           46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   82 (305)
Q Consensus        46 ~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~~   82 (305)
                      ...|.|.||+|.||...++.....|.  +++..+.++
T Consensus        30 G~~VlV~ga~ggvG~~aiqlak~~Ga--~vi~~~~~~   64 (182)
T d1v3va2          30 GETVLVSAAAGAVGSVVGQIAKLKGC--KVVGAAGSD   64 (182)
T ss_dssp             SCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSH
T ss_pred             CCEEEEEeCCCchhHHHHHHHHccCC--EEEEeCCCH
Confidence            34899999999999999999999997  888877643

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.32  E-value=0.23  Score=38.92  Aligned_cols=38  Identities=29%  Similarity=0.296  Sum_probs=26.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 021932           43 GSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV   81 (305)
Q Consensus        43 ~~~~~KI~IIGaaG~VGs~la~~L~~~~~~~el~L~D~~   81 (305)
                      ...++||+|||+ |.+|...+..+...+-...+.++|..
T Consensus         4 ~~~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~   41 (172)
T d1lc0a1           4 NSGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFV   41 (172)
T ss_dssp             CCCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEE
T ss_pred             CCCCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            345679999998 99999988777654322345555543