Citrus Sinensis ID: 021951

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
MQGSMFPFGSTLPSEAFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIVKRT
cccccccccccccccccccccccccccccccccccccHHHHHcccccccccccEEEEEccccccccEEEEEEEEcccccEEEEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEEEccccccccccEEEEEEEEcccccccccccEEEEccccccHHHHHHHcccccccEEEEEcccccccEEEEcccccccccEEEEEccccccccccEEEEEEEEccEEEccccccEEEEcccccccccHHHHHHHHHHHHcc
cccEEEEcccccccccEEEEccccccccHHHcHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEccccccEEEEEEcccccEEEEccccccHccccccccccccccccccccHHHHHHccccccccccccccEEEEEEEccccccEEEEEEEEEEEcccccEEcccEEEEEEEcccccccccccccEEcccccccEHHHHHHHccccccEEEEEEccccccEEEEccccccccccEEEEEccccccEEEEEccEEEEccEEccccccEEEEEccccEEcccHHHHHHHHHHHccc
mqgsmfpfgstlpseafvrlpdrsfhfqpvpgrlswsrnYAAKGIKFICACSSLLFqvhgnvyptgyynvtmyigqparpyfldldtgsdltwlqcdapcvrcveaphplyrpsndlvpcedpicaslhapghhncedpaqcdyeleyadggsslgVLVKDAfafnytngqrlnprlalgcgynqvpgasyhpldgilglgkgkssIVSQLHSQKLIRNVVGhclsgggggflffgddlydssrVVWTSmssdytkyyspgvaelffggettglknlpvvfdsgssytylnRVTYQTLTSIVKRT
mqgsmfpfgstLPSEAFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDsgssytylnrvtyqtltsivkrt
MQGSMFPFGSTLPSEAFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHClsgggggflffgddlydssRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIVKRT
***************AFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHC********LFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIV***
*************************************************************VYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEA************PCEDPICA*************AQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIVKRT
MQGSMFPFGSTLPSEAFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIVKRT
*QGSMFPFGSTLPSEAFVRLPDRSFHFQP*PG***WSR*Y************SLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIVKR*
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
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MQGSMFPFGSTLPSEAFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIVKRT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query305 2.2.26 [Sep-21-2011]
Q0IU52 410 Aspartic proteinase Asp1 no no 0.806 0.6 0.475 2e-59
A2ZC67 410 Aspartic proteinase Asp1 N/A no 0.813 0.604 0.467 7e-57
Q9S9K4 475 Aspartic proteinase-like no no 0.760 0.488 0.260 9e-19
Q9LX20 528 Aspartic proteinase-like no no 0.737 0.426 0.289 6e-16
Q766C3 437 Aspartic proteinase nepen N/A no 0.488 0.340 0.329 6e-15
Q766C2 438 Aspartic proteinase nepen N/A no 0.429 0.299 0.329 3e-14
Q9LS40 500 Protein ASPARTIC PROTEASE no no 0.393 0.24 0.318 1e-12
Q9LHE3 470 Protein ASPARTIC PROTEASE no no 0.390 0.253 0.295 4e-10
Q3EBM5 447 Probable aspartic proteas no no 0.390 0.266 0.296 5e-09
Q6XBF8 437 Aspartic proteinase CDR1 no no 0.393 0.274 0.299 1e-08
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function desciption
 Score =  229 bits (583), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/267 (47%), Positives = 169/267 (63%), Gaps = 21/267 (7%)

Query: 52  SSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLY 111
           S+++ ++HGNVYP G++ +TM IG PA+ YFLD+DTGS LTWLQCDAPC  C   PH LY
Sbjct: 22  SAVVLELHGNVYPIGHFFITMNIGDPAKSYFLDIDTGSTLTWLQCDAPCTNCNIVPHVLY 81

Query: 112 RPS-NDLVPCEDPICASLHAP--GHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYT 168
           +P+   LV C D +C  L+        C    QCDY ++Y D  SS+GVLV D F+ + +
Sbjct: 82  KPTPKKLVTCADSLCTDLYTDLGKPKRCGSQKQCDYVIQYVD-SSSMGVLVIDRFSLSAS 140

Query: 169 NGQRLNP-RLALGCGYNQ------VPGASYHPLDGILGLGKGKSSIVSQLHSQKLI-RNV 220
           NG   NP  +A GCGY+Q      VP     P+D ILGL +GK +++SQL SQ +I ++V
Sbjct: 141 NGT--NPTTIAFGCGYDQGKKNRNVP----IPVDSILGLSRGKVTLLSQLKSQGVITKHV 194

Query: 221 VGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLP-- 278
           +GHC+S  GGGFLFFGD    +S V WT M+ ++ KYYSPG   L F   +  +   P  
Sbjct: 195 LGHCISSKGGGFLFFGDAQVPTSGVTWTPMNREH-KYYSPGHGTLHFDSNSKAISAAPMA 253

Query: 279 VVFDSGSSYTYLNRVTYQTLTSIVKRT 305
           V+FDSG++YTY     YQ   S+VK T
Sbjct: 254 VIFDSGATYTYFAAQPYQATLSVVKST 280

Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
334187133 425 aspartyl protease family protein [Arabid 0.875 0.628 0.698 1e-108
297798582 425 hypothetical protein ARALYDRAFT_328390 [ 0.875 0.628 0.698 1e-108
79495937401 aspartyl protease family protein [Arabid 0.875 0.665 0.698 1e-108
26452545 413 putative nucellin [Arabidopsis thaliana] 0.875 0.646 0.698 1e-108
4490316 420 nucellin-like protein [Arabidopsis thali 0.852 0.619 0.706 1e-108
312282457 424 unnamed protein product [Thellungiella h 0.849 0.610 0.712 1e-107
225438361 426 PREDICTED: aspartic proteinase Asp1 [Vit 0.826 0.591 0.731 1e-105
255563835 433 nucellin, putative [Ricinus communis] gi 0.836 0.588 0.745 1e-103
147802609 424 hypothetical protein VITISV_037997 [Viti 0.826 0.594 0.715 1e-101
56692305 426 nucellin-like protein [Daucus carota] 0.806 0.577 0.692 1e-100
>gi|334187133|ref|NP_001190905.1| aspartyl protease family protein [Arabidopsis thaliana] gi|21592493|gb|AAM64443.1| nucellin-like protein [Arabidopsis thaliana] gi|332660834|gb|AEE86234.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/269 (69%), Positives = 219/269 (81%), Gaps = 2/269 (0%)

Query: 38  RNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCD 97
           R  A    +F  A SS++F VHGNVYP GYYNVT+ IGQP RPY+LDLDTGSDLTWLQCD
Sbjct: 30  RKTAGFSDRFTRAVSSVVFPVHGNVYPLGYYNVTINIGQPPRPYYLDLDTGSDLTWLQCD 89

Query: 98  APCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGV 157
           APCVRC+EAPHPLY+PS+DL+PC DP+C +LH   +  CE P QCDYE+EYADGGSSLGV
Sbjct: 90  APCVRCLEAPHPLYQPSSDLIPCNDPLCKALHLNSNQRCETPEQCDYEVEYADGGSSLGV 149

Query: 158 LVKDAFAFNYTNGQRLNPRLALGCGYNQVPGA-SYHPLDGILGLGKGKSSIVSQLHSQKL 216
           LV+D F+ NYT G RL PRLALGCGY+Q+PGA S+HPLDG+LGLG+GK SI+SQLHSQ  
Sbjct: 150 LVRDVFSMNYTQGLRLTPRLALGCGYDQIPGASSHHPLDGVLGLGRGKVSILSQLHSQGY 209

Query: 217 IRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYTKYYSPGV-AELFFGGETTGLK 275
           ++NV+GHCLS  GGG LFFGDDLYDSSRV WT MS +Y+K+YSP +  EL FGG TTGLK
Sbjct: 210 VKNVIGHCLSSLGGGILFFGDDLYDSSRVSWTPMSREYSKHYSPAMGGELLFGGRTTGLK 269

Query: 276 NLPVVFDSGSSYTYLNRVTYQTLTSIVKR 304
           NL  VFDSGSSYTY N   YQ +T ++KR
Sbjct: 270 NLLTVFDSGSSYTYFNSKAYQAVTYLLKR 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297798582|ref|XP_002867175.1| hypothetical protein ARALYDRAFT_328390 [Arabidopsis lyrata subsp. lyrata] gi|297313011|gb|EFH43434.1| hypothetical protein ARALYDRAFT_328390 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79495937|ref|NP_567922.2| aspartyl protease family protein [Arabidopsis thaliana] gi|332660833|gb|AEE86233.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|26452545|dbj|BAC43357.1| putative nucellin [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4490316|emb|CAB38807.1| nucellin-like protein [Arabidopsis thaliana] gi|7270297|emb|CAB80066.1| nucellin-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312282457|dbj|BAJ34094.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|225438361|ref|XP_002273988.1| PREDICTED: aspartic proteinase Asp1 [Vitis vinifera] gi|296082608|emb|CBI21613.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255563835|ref|XP_002522918.1| nucellin, putative [Ricinus communis] gi|223537845|gb|EEF39461.1| nucellin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147802609|emb|CAN73001.1| hypothetical protein VITISV_037997 [Vitis vinifera] Back     alignment and taxonomy information
>gi|56692305|dbj|BAD80835.1| nucellin-like protein [Daucus carota] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
TAIR|locus:2205861 405 AT1G44130 [Arabidopsis thalian 0.819 0.617 0.460 7.1e-61
TAIR|locus:2204725 466 AT1G77480 [Arabidopsis thalian 0.829 0.542 0.435 4.8e-55
TAIR|locus:2028466 583 AT1G49050 [Arabidopsis thalian 0.816 0.427 0.383 5.3e-40
TAIR|locus:2198753 485 AT1G05840 [Arabidopsis thalian 0.518 0.325 0.331 1.8e-22
TAIR|locus:505006268 458 AT2G23945 [Arabidopsis thalian 0.504 0.336 0.365 4.9e-22
TAIR|locus:2183730474 AT5G10770 "AT5G10770" [Arabido 0.773 0.497 0.302 1.6e-20
TAIR|locus:2056916 461 AT2G03200 [Arabidopsis thalian 0.478 0.316 0.351 1.6e-20
TAIR|locus:2075512 488 AT3G02740 [Arabidopsis thalian 0.747 0.467 0.294 2.3e-20
TAIR|locus:2102335 452 AT3G25700 [Arabidopsis thalian 0.501 0.338 0.333 2.3e-20
TAIR|locus:2083098 632 AT3G50050 [Arabidopsis thalian 0.783 0.378 0.280 2.7e-20
TAIR|locus:2205861 AT1G44130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 117/254 (46%), Positives = 158/254 (62%)

Query:    52 SSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLY 111
             SS++F + GNV+P GYY+V M IG P + +  D+DTGSDLTW+QCDAPC  C   P+  Y
Sbjct:    33 SSVVFPLSGNVFPLGYYSVLMQIGSPPKAFQFDIDTGSDLTWVQCDAPCSGCTLPPNLQY 92

Query:   112 RPSNDLVPCEDPICASLHAPGHHNCEDPA-QCDYELEYADGGSSLGVLVKDAFAFNYTNG 170
             +P  +++PC +PIC +LH P   +C +P  QCDYE++YAD GSS+G LV D F     NG
Sbjct:    93 KPKGNIIPCSNPICTALHWPNKPHCPNPQEQCDYEVKYADQGSSMGALVTDQFPLKLVNG 152

Query:   171 QRLNPRLALGCGYNQ-VPGASYHPLD-GILGLGKGKSSIVSQLHSQKLIRNVVGHCXXXX 228
               + P +A GCGY+Q  P A   P   G+LGLG+GK  +++QL S  L RNVVGHC    
Sbjct:   153 SFMQPPVAFGCGYDQSYPSAHPPPATAGVLGLGRGKIGLLTQLVSAGLTRNVVGHCLSSK 212

Query:   229 XXXXXXXXXXXXXXXRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYT 288
                             V WT + S    +Y+ G A+L F G+ TGLK L ++FD+GSSYT
Sbjct:   213 GGGFLFFGDNLVPSIGVAWTPLLSQ-DNHYTTGPADLLFNGKPTGLKGLKLIFDTGSSYT 271

Query:   289 YLNRVTYQTLTSIV 302
             Y N   YQT+ +++
Sbjct:   272 YFNSKAYQTIINLI 285
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2204725 AT1G77480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028466 AT1G49050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198753 AT1G05840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006268 AT2G23945 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183730 AT5G10770 "AT5G10770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056916 AT2G03200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075512 AT3G02740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102335 AT3G25700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083098 AT3G50050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 1e-100
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 2e-39
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 3e-35
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 1e-26
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 8e-22
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 2e-18
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 2e-09
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 7e-09
cd05489 362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 7e-07
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information 
 Score =  294 bits (754), Expect = e-100
 Identities = 127/233 (54%), Positives = 143/233 (61%), Gaps = 40/233 (17%)

Query: 66  GYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPIC 125
           GYY VT+ IG P +PYFLD+DTGSDLTWLQCDAPC  C                      
Sbjct: 1   GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC---------------------- 38

Query: 126 ASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQ 185
                          QCDYE+EYADGGSS+GVLV D F+   TNG R  PR+A GCGY+Q
Sbjct: 39  ---------------QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQ 83

Query: 186 VPGA--SYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSS 243
                    P DGILGLG+GK S+ SQL SQ +I+NV+GHCLS  GGGFLFFGDDL  SS
Sbjct: 84  QGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGHCLSSNGGGFLFFGDDLVPSS 143

Query: 244 RVVWTSMSSD-YTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTY 295
            V WT M  +   K+YSPG A L F G+ TG K L VVFDSGSSYTY N   Y
Sbjct: 144 GVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY 196

Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif. Length = 273
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 305
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339 398 consensus Aspartyl protease [Posttranslational mod 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
PTZ00165 482 aspartyl protease; Provisional 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
cd05489 362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05473 364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.97
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.9
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 98.16
PF14541 161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 97.2
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 96.91
PF1365090 Asp_protease_2: Aspartyl protease 96.01
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.04
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 91.82
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 90.27
PF1365090 Asp_protease_2: Aspartyl protease 89.03
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 88.96
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 87.07
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 84.75
COG3577215 Predicted aspartyl protease [General function pred 82.39
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 82.33
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 81.51
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 81.2
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.9e-48  Score=366.86  Aligned_cols=235  Identities=32%  Similarity=0.558  Sum_probs=198.2

Q ss_pred             CCeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCC----CCCCCcccccCcCCCCCCCCCCC
Q 021951           64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSND----LVPCEDPICASLHAPGHHNCEDP  139 (305)
Q Consensus        64 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S----~v~c~s~~C~~~~~~~~~~c~~~  139 (305)
                      .+++|+++|.||||||++.|++||||+++||+|. +|..|..+.++.|||++|    .++|+++.|..++.  ...|..+
T Consensus        81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~  157 (431)
T PLN03146         81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCK-PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDE  157 (431)
T ss_pred             CCccEEEEEEcCCCCceEEEEECCCCCcceEcCC-CCcccccCCCCcccCCCCCCCcccCCCCcccccCCC--CCCCCCC
Confidence            3679999999999999999999999999999999 999999888999999998    59999999987653  2357666


Q ss_pred             CCceeEeeeCCCCeEEEEEEEEEEEEeecCCC-cCCCceEEEeeeecCCCCCCCCcceEEecCCCCChHHHHhhhccccc
Q 021951          140 AQCDYELEYADGGSSLGVLVKDAFAFNYTNGQ-RLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIR  218 (305)
Q Consensus       140 ~~~~~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~-~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~  218 (305)
                      +.|.|.+.|+||+.+.|.+++|+|+|++..+. ..++++.|||++.+...+ ....+||||||++.+|+++||...  +.
T Consensus       158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f-~~~~~GilGLG~~~~Sl~sql~~~--~~  234 (431)
T PLN03146        158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTF-DEKGSGIVGLGGGPLSLISQLGSS--IG  234 (431)
T ss_pred             CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCc-cCCCceeEecCCCCccHHHHhhHh--hC
Confidence            67999999999988899999999999753221 457899999998763323 235899999999999999999764  55


Q ss_pred             eeeEEeecC-----CCcceEEECCCCCCC-CCcEEEEcccCCC-cceeeEeeEEEECCEEeeeCC--------CCEEEec
Q 021951          219 NVVGHCLSG-----GGGGFLFFGDDLYDS-SRVVWTSMSSDYT-KYYSPGVAELFFGGETTGLKN--------LPVVFDS  283 (305)
Q Consensus       219 ~~Fs~~L~~-----~~~G~l~fG~~~~~~-g~~~~~pl~~~~~-~~y~v~l~~i~v~~~~~~~~~--------~~~iiDS  283 (305)
                      ++|||||.+     ...|.|+||+..+.. ..+.|+||+.+.. .+|.|.+++|+||++.+.++.        +.+||||
T Consensus       235 ~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDS  314 (431)
T PLN03146        235 GKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDS  314 (431)
T ss_pred             CcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeC
Confidence            699999963     247999999865543 4589999986432 799999999999999876533        5799999


Q ss_pred             cccceeecHHHHHHHHHHHhc
Q 021951          284 GSSYTYLNRVTYQTLTSIVKR  304 (305)
Q Consensus       284 GTs~~~lp~~~~~~l~~~~~~  304 (305)
                      ||++++||+++|++|.++|.+
T Consensus       315 GTt~t~Lp~~~y~~l~~~~~~  335 (431)
T PLN03146        315 GTTLTLLPSDFYSELESAVEE  335 (431)
T ss_pred             CccceecCHHHHHHHHHHHHH
Confidence            999999999999999998765

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
1uh7_A325 Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt 5e-04
3apr_E325 Binding Of A Reduced Peptide Inhibitor To The Aspar 5e-04
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325 Back     alignment and structure 
Iteration: 1

 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 64/170 (37%), Gaps = 36/170 (21%)
Query: 60  GNVYPTGYYNVTMY-----IGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPS 114
           G V  T Y N   Y     IG P + + LD DTGS   W+     C  C  +    Y P+
Sbjct: 4   GTVPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWI-ASTLCTNC-GSRQTKYDPN 61
Query: 115 NDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLN 174
                      ++  A G           + + Y DG S+ G+L KD    N   G  L 
Sbjct: 62  Q---------SSTYQADGRT---------WSISYGDGSSASGILAKD----NVNLGGLLI 99
Query: 175 PRLALGCGYNQVPGASYHPLDGILGLG-------KGKSSIVSQLHSQKLI 217
               +     +    +  P DG+LGLG       +G  + +  L SQ LI
Sbjct: 100 KGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLI 149
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
3aup_A 403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 2e-48
3vla_A 413 EDGP; extracellular, inhibitor, plant protein; HET 3e-44
1t6e_X 381 Xylanase inhibitor; two beta-barrel domain structu 2e-43
3pvk_A 342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 3e-11
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 3e-10
2qzx_A 342 Candidapepsin-5; aspartic proteinase, aspartyl pro 4e-10
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 7e-08
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 2e-07
3lpj_A 455 Beta-secretase 1; alzheimer'S, aspartyl protease, 3e-07
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 5e-07
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 6e-07
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 8e-07
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 9e-07
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 1e-06
2ewy_A 383 Beta-secretase 2; BACE2, aspartic protease, hydrol 2e-06
1mpp_A 361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 2e-06
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 3e-06
2qp8_A 395 Beta-secretase 1; BACE1, protease, alternative spl 3e-06
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 6e-06
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 7e-06
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 7e-06
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 1e-05
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 1e-05
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 2e-05
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 5e-05
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 1e-04
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 1e-04
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 1e-04
1wkr_A 340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 2e-04
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 5e-04
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  165 bits (419), Expect = 2e-48
 Identities = 44/287 (15%), Positives = 85/287 (29%), Gaps = 41/287 (14%)

Query: 52  SSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLY 111
           + ++  V  +   TG +   +    P     + +D   +  W+ C+           P  
Sbjct: 8   NLVVLPVQND-GSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCE-QQYSSKTYQAPFC 65

Query: 112 RPSN----DLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNY 167
             +     +   C     AS        C                + LG L +D  A + 
Sbjct: 66  HSTQCSRANTHQCLSCPAASR-----PGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHA 120

Query: 168 TNGQRLN-------PRLALGCGYNQVPGASYHP-LDGILGLGKGKSSIVSQLHSQKLIRN 219
           T G           P+    C  + +          G+ GLG    S+ +QL S   ++ 
Sbjct: 121 TQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQR 180

Query: 220 VVGHCLSG--GGGGFLFFGDDLYDSSR---------VVWTSMSSDYTKYYSPGVAELFFG 268
               CLS      G + FGD   +  +         + +T ++      Y+  V  +   
Sbjct: 181 QFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRIN 240

Query: 269 GETTGLKNLP-----------VVFDSGSSYTYLNRVTYQTLTSIVKR 304
             +    N              +  + + +  L +  YQ  T +  +
Sbjct: 241 QHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQ 287
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
3vla_A 413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3aup_A 403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
1t6e_X 381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
1mpp_A 361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
2qzx_A 342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
3pvk_A 342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
2ewy_A 383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1wkr_A 340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
2qp8_A 395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3lpj_A 455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
3vf3_A 402 Beta-secretase 1; structure-based drug design, hyd 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.87
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.86
2hs1_A99 HIV-1 protease; ultra-high resolution active site 87.08
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 86.95
3liy_A116 Protease; hydrolase, hydrolase-hydrolase inhibitor 86.33
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 84.65
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 81.43
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=2.2e-47  Score=361.80  Aligned_cols=242  Identities=22%  Similarity=0.363  Sum_probs=201.5

Q ss_pred             cCceeEEEeecccCCeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCC
Q 021951           51 CSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHA  130 (305)
Q Consensus        51 ~~~~~~pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~  130 (305)
                      .+.+.+|++++. .+++|+++|.||||||++.|+|||||+++||+|. +|.     ....|.    .++|.++.|.....
T Consensus         6 ~~~~~~pv~~d~-~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~-~c~-----~Sst~~----~v~C~s~~C~~~~~   74 (413)
T 3vla_A            6 PSALVVPVKKDA-STLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD-QNY-----VSSTYR----PVRCRTSQCSLSGS   74 (413)
T ss_dssp             CSEEEEEEEECT-TTCCEEEEEEETTTTEEEEEEEETTCSSEEEECS-SSC-----CCTTCE----ECBTTSHHHHHTTC
T ss_pred             CccEEEEeeecC-CCCeEEEEEEcCCCCcceEEEEeCCChhhhcccC-CCC-----CCCCcC----ccCCCccccccccc
Confidence            578899999985 6999999999999999999999999999999998 662     122333    38999999987765


Q ss_pred             CCCCC--------CCCCCCceeEeee-CCCCeEEEEEEEEEEEEeecCCC-----cCCCceEEEeeeecCCCCCCCCcce
Q 021951          131 PGHHN--------CEDPAQCDYELEY-ADGGSSLGVLVKDAFAFNYTNGQ-----RLNPRLALGCGYNQVPGASYHPLDG  196 (305)
Q Consensus       131 ~~~~~--------c~~~~~~~~~~~Y-~~Gs~~~G~~~~D~v~l~~~~g~-----~~~~~~~Fg~~~~~~~~~~~~~~~G  196 (305)
                      +.+..        |. ++.|.|.+.| +||+.+.|.+++|+|+|+..+|.     +.++++.|||++.+.........+|
T Consensus        75 ~~~~~c~s~~~~~c~-~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~~~dG  153 (413)
T 3vla_A           75 IACGDCFNGPRPGCN-NNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVG  153 (413)
T ss_dssp             CEEECCSSCCBTTBC-SSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCTTCCE
T ss_pred             CCCcccccCCCCCCC-CCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCccccccc
Confidence            43332        33 2579999999 58888999999999999865553     4678999999987521123457899


Q ss_pred             EEecCCCCChHHHHhhhccccceeeEEeecC--CCcceEEECCCCC-------CCCC-cEEEEcccCCC-----------
Q 021951          197 ILGLGKGKSSIVSQLHSQKLIRNVVGHCLSG--GGGGFLFFGDDLY-------DSSR-VVWTSMSSDYT-----------  255 (305)
Q Consensus       197 IlGLg~~~~s~~~ql~~~~~i~~~Fs~~L~~--~~~G~l~fG~~~~-------~~g~-~~~~pl~~~~~-----------  255 (305)
                      |||||++.+|++.||.+++.++++||+||.+  ..+|+|+||+.+.       +.++ +.|+||+.++.           
T Consensus       154 IlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~  233 (413)
T 3vla_A          154 MAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEP  233 (413)
T ss_dssp             EEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCC
T ss_pred             ccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCC
Confidence            9999999999999999988789999999996  4679999998753       3567 99999998731           


Q ss_pred             -cceeeEeeEEEECCEEeeeC----------CCCEEEeccccceeecHHHHHHHHHHHhc
Q 021951          256 -KYYSPGVAELFFGGETTGLK----------NLPVVFDSGSSYTYLNRVTYQTLTSIVKR  304 (305)
Q Consensus       256 -~~y~v~l~~i~v~~~~~~~~----------~~~~iiDSGTs~~~lp~~~~~~l~~~~~~  304 (305)
                       .+|+|.+++|+||++.+.++          .+++||||||++++||+++|++|.++|.+
T Consensus       234 ~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~  293 (413)
T 3vla_A          234 SVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIK  293 (413)
T ss_dssp             CCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHH
T ss_pred             CceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHH
Confidence             59999999999999998764          36899999999999999999999999875
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A* Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 305
d1t6ex_ 381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 2e-25
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 2e-17
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 4e-17
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 6e-17
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 3e-16
d2qp8a1 387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 2e-15
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 4e-15
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 6e-15
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 2e-14
d1eaga_ 342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 5e-14
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 6e-14
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 7e-14
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 8e-14
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 1e-13
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 2e-13
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 6e-13
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 7e-13
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 2e-12
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 2e-12
d1mppa_ 357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 3e-10
d1wkra_ 340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 6e-10
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 3e-09
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  102 bits (254), Expect = 2e-25
 Identities = 48/261 (18%), Positives = 77/261 (29%), Gaps = 31/261 (11%)

Query: 63  YPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSN----DLV 118
             T  Y +  + G       L LD    L W  CD       E P               
Sbjct: 11  PATSLYTIPFHDGAS-----LVLDVAGPLVWSTCD-GGQPPAEIPCSSPTCLLANAYPAP 64

Query: 119 PCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLA 178
            C  P C S       +  D     Y      G  + G L    F  N T+G +   ++ 
Sbjct: 65  GCPAPSCGS-------DKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVN 117

Query: 179 LGCGYNQVPGASYHPL----DGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLF 234
           +G      P      L     G+ GL     ++ +Q+ S + + N    CL  GG G   
Sbjct: 118 VGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAI 177

Query: 235 FGDDLYDSSR----VVWTSMSS-DYTKYYSPGVAELFFGGETTGL-----KNLPVVFDSG 284
           FG       +    + +T + +   +  +      +  G     +         V+  + 
Sbjct: 178 FGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTR 237

Query: 285 SSYTYLNRVTYQTLTSIVKRT 305
             Y  L    Y+ L     + 
Sbjct: 238 LPYVLLRPDVYRPLMDAFTKA 258
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1eaga_ 342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1mppa_ 357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1t6ex_ 381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d2qp8a1 387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1wkra_ 340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d2nmza199 Human immunodeficiency virus type 1 protease {Huma 85.12
d4fiva_113 Feline immunodeficiency virus (FIV) protease {Feli 83.6
d3ecga199 Human immunodeficiency virus type 2 (HIV-2) protea 83.18
d2fmba_104 EIAV protease {Equine infectious anemia virus [Tax 82.48
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=7.4e-40  Score=303.80  Aligned_cols=222  Identities=22%  Similarity=0.373  Sum_probs=187.5

Q ss_pred             eEEEeecccCCeeEEEEEEeCCCCeEEEEEEECCCCceeEecCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCC
Q 021951           55 LFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHH  134 (305)
Q Consensus        55 ~~pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~C~~C~~~~~~~y~p~~S~v~c~s~~C~~~~~~~~~  134 (305)
                      ..||.+  +.+.+|+++|.||||||++.|+|||||+++||+|. .|..|..+.++.|+|++|.      +|+.       
T Consensus        47 ~~~l~n--~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~-~C~~~~~~~~~~yd~~~Ss------t~~~-------  110 (370)
T d3psga_          47 DEPLEN--YLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSV-YCSSLACSDHNQFNPDDSS------TFEA-------  110 (370)
T ss_dssp             CCTTGG--GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBT-TCCSGGGTTSCCBCGGGCT------TCEE-------
T ss_pred             cccccc--ccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECc-cCCCcccccccccCCCccc------cccc-------
Confidence            356654  34789999999999999999999999999999999 9999998889999998873      1111       


Q ss_pred             CCCCCCCceeEeeeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEEeeeecCCC-CCCCCcceEEecCCCC------ChH
Q 021951          135 NCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGK------SSI  207 (305)
Q Consensus       135 ~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~l~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~------~s~  207 (305)
                           ..|.|.+.|++| ++.|.++.|++.+    +...+.++.|||+...... +.....+||+|||++.      ..+
T Consensus       111 -----~~~~~~~~Yg~G-s~~G~~~~d~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~  180 (370)
T d3psga_         111 -----TSQELSITYGTG-SMTGILGYDTVQV----GGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPV  180 (370)
T ss_dssp             -----EEEEEEEESSSC-EEEEEEEEEEEEE----TTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCH
T ss_pred             -----CCCcEEEEeCCc-eEEEEEEEEEEee----eceeeeeeEEEEEeeccCceecccccccccccccCcccccCCCch
Confidence                 467999999999 7999999999999    4677889999999876433 3445789999999874      347


Q ss_pred             HHHhhhcccc-ceeeEEeecC--CCcceEEECCCC--CCCCCcEEEEcccCCCcceeeEeeEEEECCEEeeeC-CCCEEE
Q 021951          208 VSQLHSQKLI-RNVVGHCLSG--GGGGFLFFGDDL--YDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLK-NLPVVF  281 (305)
Q Consensus       208 ~~ql~~~~~i-~~~Fs~~L~~--~~~G~l~fG~~~--~~~g~~~~~pl~~~~~~~y~v~l~~i~v~~~~~~~~-~~~~ii  281 (305)
                      +.++..++++ +++|++|+..  ..+|.|+||+.+  ++.+++.|+|+...  .+|.|.++++.++++.+... ...+||
T Consensus       181 ~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~~--~~w~v~~~~i~v~g~~~~~~~~~~aii  258 (370)
T d3psga_         181 FDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVE--GYWQITLDSITMDGETIACSGGCQAIV  258 (370)
T ss_dssp             HHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEE--TTEEEEECEEESSSSEEECTTCEEEEE
T ss_pred             hhhhhhhcccccceeEEEeecCCCCCceEecCCcCchhcccceeEEeeccc--ceEEEEEeeEEeCCeEEecCCCccEEE
Confidence            8899999999 8999999985  457899999764  46799999999876  59999999999999887654 468999


Q ss_pred             eccccceeecHHHHHHHHHHHhc
Q 021951          282 DSGSSYTYLNRVTYQTLTSIVKR  304 (305)
Q Consensus       282 DSGTs~~~lp~~~~~~l~~~~~~  304 (305)
                      ||||++++||+++|++|.++|.+
T Consensus       259 DSGTs~~~lp~~~~~~i~~~l~~  281 (370)
T d3psga_         259 DTGTSLLTGPTSAIANIQSDIGA  281 (370)
T ss_dssp             CTTCCSEEEEHHHHHHHHHHTTC
T ss_pred             ecCCceEeCCHHHHHHHHHHhCC
Confidence            99999999999999999999864
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]} Back     information, alignment and structure
>d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2 (HIV-2) protease {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]} Back     information, alignment and structure