Citrus Sinensis ID: 021954

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQLLGIT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHcccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEc
Coil and Loop (DISEMBL)
messasgralphhrepfdwltrpplnlittTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSrlchiprlkdqwcenafrfngvnffrftndafasslsffngggtrknsghegtshldtartnlfIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYslnsigptmekicgprrylgVYFSSAIASSAmsyrfcnspavgasgaIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGidnwghdmpgrrvplqllgit
Flexible Loop (DISEMBL)
messasgralphhrepfdwltrpPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQLLGIT
Low Complexity Region (SEG)
MESSASGRALPHHREPFDWLTRPPLNLITTTAKhslsvslsrrllhhhplharrllhssVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQLLGIT
Disordered region (IsUnstruct)
****************FDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGG*************LDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQ*****
Disordered Region (DISOPRED)
************HREPFDWLTRP*******************RLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAF******************************LFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQLLGIT
Disordered Region (DISEMBL)
***********HHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGT**********HLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQLLGIT
Disordered Region (DISPRO)
*********LPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNG*******************TNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQLLGIT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQLLGIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
P54493	507	Rhomboid protease GluP OS	yes	no	0.445	0.268	0.376	6e-17
Q695T9	283	Rhomboid-like protease 2	N/A	no	0.347	0.374	0.361	2e-11
P96617	199	Putative rhomboid proteas	no	no	0.373	0.572	0.365	1e-10
P46116	281	Rhomboid protease AarA OS	yes	no	0.527	0.572	0.303	3e-10
Q695U0	293	Rhomboid-like protease 1	N/A	no	0.508	0.529	0.323	1e-09
Q6IUY1	263	Rhomboid-like protease 3	N/A	no	0.560	0.650	0.266	1e-07
Q6GMF8	857	Inactive rhomboid protein	no	no	0.393	0.140	0.344	2e-06
Q6PIX5	856	Inactive rhomboid protein	yes	no	0.390	0.139	0.341	2e-06
Q499S9	856	Inactive rhomboid protein	yes	no	0.390	0.139	0.333	3e-06
A9L8T6	855	Inactive rhomboid protein	N/A	no	0.390	0.139	0.325	8e-06

>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP PE=1 SV=2

 Score = 88.6 bits (218), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 80/138 (57%), Gaps = 2/138 (1%)

Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
           + L+ +GAK NSLI +G++WRL T   LH  IAHL  N  +L S+G  +E++ G  R+L 
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263

Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
           +Y ++ I  S  S+ F   P+ GASGAIFG +G+     + +R +    +    ++  +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 321

Query: 273 IFNMAIGLLIKGIDNWGH 290
           I N+  G  +  IDN GH
Sbjct: 322 IINLGFGFAVSNIDNSGH 339

Rhomboid-type serine protease that catalyzes intramembrane proteolysis. Important for normal cell division and sporulation. May act as a glucose exporter.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 1EC: 0EC: 5

>sp|Q695T9|RHBL2_TOXGO Rhomboid-like protease 2 OS=Toxoplasma gondii GN=ROM2 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 13/119 (10%)

Query: 140 VNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
           V + VYIA  A           T   L+++GA I  LI  G+ WRL    FLH N+ H++
Sbjct: 68  VQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHIL 127

Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSPAVGASGAIFGLVG 245
           +N +    IG TME+  G +  L VYF   + ++ +S    FC     GAS A+F L+G
Sbjct: 128 MNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTAVFALIG 186

Serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168) GN=ydcA PE=3 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 12/126 (9%)

Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
           +  G++WRL T   LHA   HL+ N  S+    P +E++ G  R+L VY  S I  +  +
Sbjct: 53  VANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGT 112

Query: 226 YRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
           Y     P     VGASGAIFGL G + +F++  RN L G     Q  +K+II  +A  +L
Sbjct: 113 Y--VTEPLDYVHVGASGAIFGLFGVY-LFMVLFRNELIG-----QEHSKMIITLLAFAVL 164

Query: 282 IKGIDN 287
           +  I++
Sbjct: 165 MSFINS 170

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P46116|AARA_PROST Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 84/191 (43%), Gaps = 30/191 (15%)

Query: 129 IGRQWTNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
           I    T +LL + V  Y   FA+     +  L+L+GA I  L   G +WR   S  LH+N
Sbjct: 21  IALTLTLVLLNIAVYFYQIVFASPLDSRESNLILFGANIYQLSLTGDWWRYPISMMLHSN 80

Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-----YRFCNSP------ 232
             HL  NC +L  IG   E+  G  + L +Y  S I ++  S     Y   NS       
Sbjct: 81  GTHLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSAYWQYYEISNSDLWTDST 140

Query: 233 -----AVGASGAIFGLVGSFAVFIMR--------HRNILGGGKEELQHLAKVIIFNMAIG 279
                 VGASGAI G+  +  +++++        H  I    K +L +L  +I   +  G
Sbjct: 141 VYITIGVGASGAIMGIAAASVIYLIKVVINKPNPHPVIQRRQKYQLYNLIAMIALTLING 200

Query: 280 LLIKGIDNWGH 290
           L   G+DN  H
Sbjct: 201 LQ-SGVDNAAH 210

Rhomboid serine protease that catalyzes intramembrane proteolysis. Mediates quorum-sensing and the subsequent regulation of target genes via activation of the Tat protein export system. Catalyzes the proteolytic activation of tatA by removal of its N-terminal extension.

Providencia stuartii (taxid: 588)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q695U0|RHBL1_TOXGO Rhomboid-like protease 1 OS=Toxoplasma gondii GN=ROM1 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 12/167 (7%)

Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
            W   ++ V +   +      + L+ +GA    LI +GQ WRL    FLHAN  H+  N 
Sbjct: 70  DWIFYIVTVCLDTELPLIPAANILVHFGANYPPLIKQGQVWRLLLPVFLHANFFHVFFNV 129

Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR--FCNSPAVGASGAIFGLVG---- 245
           +    +G T+E+  G  ++ G+YF+SAI  + +S    FCNS  VGAS A FGL+G    
Sbjct: 130 FFQLRMGFTIERRYGLLKFTGLYFASAIYGNLLSATAFFCNSLKVGASTAGFGLIGIQIC 189

Query: 246 --SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
             +     MRHR+ +         L  +++F +  G     ID  GH
Sbjct: 190 EMALTWHRMRHRDRMLTNMVSFVLLMVLLMFTLNGG----SIDQMGH 232

Serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors. Has no detectable activity towards MIC2.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 24/195 (12%)

Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNV---LVYIAQFA-------TQDKLLLWGAKIN 163
           + G   L + +  +F G  W   ++ + V   ++YI            +  L+L GA   
Sbjct: 16  NSGDRTLRSWKDTVFPGISWDKSIVWITVAQIIMYIISCVLSRSYEPNERTLMLLGAAYA 75

Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA 223
                 Q WR+ T  FLHA I HL++N   +  I   +E+  G +++L  YF SAI  + 
Sbjct: 76  PAFSNFQLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLVTYFLSAIVGNL 135

Query: 224 MSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAK-------VIIFN 275
           +S      + +VGAS A FG++G  A  +     +     EEL+ +         V+I+ 
Sbjct: 136 LSMLMQPWALSVGASTAGFGIIGGMAAEV---SVVWCKLSEELKRIYSMDICILAVLIYF 192

Query: 276 MAIGLLIKGIDNWGH 290
           ++ G   + +D +GH
Sbjct: 193 LSFG---RTVDTFGH 204

Serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
           QF+RL  S FLHA I H +V+     +I   +EK+ G  R   +Y  S I  +  S  F 
Sbjct: 654 QFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFL 713

Query: 230 NSPA-VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
              A VG +G+ FG++    V +++   IL         L  V++F  A GLL   IDN+
Sbjct: 714 PYRAEVGPAGSQFGILACLFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLL-PWIDNF 772

Query: 289 GH 290
            H
Sbjct: 773 AH 774

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Danio rerio (taxid: 7955)

>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 170 QFWRLATSAFLHANIAHLMVN-CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF 228
           QF+RL  S FLHA I H +V+ C+ +  +   +EK+ G  R   +Y  S I  +  S  F
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLR-DLEKLAGWHRIAIIYLLSGITGNLASAIF 711

Query: 229 CNSPA-VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
               A VG +G+ FG++    V + +   IL         L  V++F  A GLL   IDN
Sbjct: 712 LPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLL-PWIDN 770

Query: 288 WGH 290
           + H
Sbjct: 771 FAH 773

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Mus musculus (taxid: 10090)

>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 170 QFWRLATSAFLHANIAHLMVN-CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF 228
           QF+RL  S FLHA I H +V+ C+ +  +   +EK+ G  R   +Y  S +  +  S  F
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLR-DLEKLAGWHRIAIIYLLSGVTGNLASAIF 711

Query: 229 CNSPA-VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
               A VG +G+ FG++    V + +   IL         L  V++F  A GLL   IDN
Sbjct: 712 LPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLL-PWIDN 770

Query: 288 WGH 290
           + H
Sbjct: 771 FAH 773

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Rattus norvegicus (taxid: 10116)

>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 4/123 (3%)

Query: 170 QFWRLATSAFLHANIAHLMVN-CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF 228
           QF+RL  S FLHA I H +V+ C+ +  +   +EK+ G  R   +Y  S +  +  S  F
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLR-DLEKLAGWHRIAIIYLLSGVTGNLASAIF 710

Query: 229 CNSPA-VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
               A VG +G+ FG++    V + +   IL         L  V++F    GLL   IDN
Sbjct: 711 LPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLL-PWIDN 769

Query: 288 WGH 290
           + H
Sbjct: 770 FAH 772

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Papio anubis (taxid: 9555)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
255581209	340	KOM, putative [Ricinus communis] gi|2235	0.878	0.788	0.610	1e-93
224073304	325	predicted protein [Populus trichocarpa]	0.875	0.821	0.602	6e-91
118483595	325	unknown [Populus trichocarpa]	0.875	0.821	0.599	2e-90
225448034	330	PREDICTED: rhomboid protease gluP [Vitis	0.875	0.809	0.599	2e-86
363807582	342	uncharacterized protein LOC100805315 [Gl	0.862	0.769	0.588	8e-78
357452411	327	Rhomboid protease gluP [Medicago truncat	0.829	0.773	0.572	5e-76
388500820	327	unknown [Medicago truncatula]	0.829	0.773	0.568	4e-75
334182855	336	RHOMBOID-like protein 10 [Arabidopsis th	0.855	0.776	0.524	1e-70
30689150	343	RHOMBOID-like protein 10 [Arabidopsis th	0.855	0.760	0.507	5e-68
388498512	220	unknown [Lotus japonicus]	0.534	0.740	0.754	2e-67

>gi|255581209|ref|XP_002531417.1| KOM, putative [Ricinus communis] gi|223528967|gb|EEF30959.1| KOM, putative [Ricinus communis]

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 171/280 (61%), Positives = 210/280 (75%), Gaps = 12/280 (4%)

Query: 13  HREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRL 72
           H +P  W+   P+    TT  H ++ + S RL          LLHSS KKLS LCH+PRL
Sbjct: 19  HHQPIWWVQFQPVGPTPTTPFHLIATATSLRL--------SFLLHSSFKKLSHLCHVPRL 70

Query: 73  KDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEGTSHLDTARTNLF 128
           KD WC  A +F G++F + +ND  AS+    LSFFNGG T K  G +G  + + +++N F
Sbjct: 71  KDIWCRKASQFKGIDFLQISNDVLASTTSHCLSFFNGGETGKGHGIQGAPYSEASKSNSF 130

Query: 129 IGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
            GR+WTNILLA+N+LV+ AQFATQ KLL WGAK+NSLIDKGQFWRL TS+FLHANI HLM
Sbjct: 131 NGRKWTNILLAINILVFAAQFATQGKLLFWGAKVNSLIDKGQFWRLVTSSFLHANIGHLM 190

Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
           VN YSLNSIGPT+E + GPRR+L VYF+SAIASSA SY FC +PAVGASGAIFGLVGS A
Sbjct: 191 VNSYSLNSIGPTIENLSGPRRFLAVYFTSAIASSATSYWFCKAPAVGASGAIFGLVGSLA 250

Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
           VF++RHR ++ GGKEELQH+A+VI+ NM IG+L +GIDNW
Sbjct: 251 VFVIRHRGMIRGGKEELQHIAQVILLNMVIGILSRGIDNW 290

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073304|ref|XP_002304070.1| predicted protein [Populus trichocarpa] gi|222841502|gb|EEE79049.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (871), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 176/292 (60%), Positives = 210/292 (71%), Gaps = 25/292 (8%)

Query: 1   MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSV 60
           M SS S    P  R P       PLNLITT A                 L    L+HSS 
Sbjct: 2   MGSSLSASPQPLWRVPIQ-----PLNLITTVAS----------------LRFGFLVHSSF 40

Query: 61  KKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEG 116
           K +S L H+PRLKD W E A +  G++  +F+ND FAS+    L FFNGGGTRK   +EG
Sbjct: 41  KNISHLYHVPRLKDVWHEKASQLQGIDVLQFSNDVFASTCSSCLCFFNGGGTRKGFRNEG 100

Query: 117 TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLAT 176
           + +L+T+  + F GRQWTNILLA+N+LVY AQ AT+ KLL WGAK+NSLIDKGQFWRLAT
Sbjct: 101 SPNLETSGRSSFNGRQWTNILLAINILVYFAQIATRGKLLFWGAKVNSLIDKGQFWRLAT 160

Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
           S+ LHANI HLMVNCYSLNS+GPT+E + GPRR++ VY +SAIASSAMSY FC +PAVGA
Sbjct: 161 SSVLHANIGHLMVNCYSLNSVGPTIENLSGPRRFIAVYLTSAIASSAMSYWFCRAPAVGA 220

Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
           SGAIFGLVGS AVF++RHR ++GGGKE+LQ++AKVI  NM IGLL KGIDNW
Sbjct: 221 SGAIFGLVGSLAVFVIRHRRMIGGGKEDLQNIAKVIFLNMMIGLLTKGIDNW 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483595|gb|ABK93694.1| unknown [Populus trichocarpa]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 175/292 (59%), Positives = 209/292 (71%), Gaps = 25/292 (8%)

Query: 1   MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSV 60
           M SS S    P  R P       PLNLITT A                 L    L+HSS 
Sbjct: 2   MGSSLSASPQPLWRVPIQ-----PLNLITTVAS----------------LRFGFLVHSSF 40

Query: 61  KKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEG 116
           K +S L H+PRLKD W E A +  G++  +F+ND FAS+    L FFNGGGTRK   +EG
Sbjct: 41  KNISHLYHVPRLKDVWHEKASQLQGIDVLQFSNDVFASTCSSCLCFFNGGGTRKGFRNEG 100

Query: 117 TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLAT 176
           + +L+T+  + F GRQWTNILLA+N+LVY AQ AT+ KLL WGAK+NSLIDKGQFWRLAT
Sbjct: 101 SPNLETSGRSSFNGRQWTNILLAINILVYFAQIATRGKLLFWGAKVNSLIDKGQFWRLAT 160

Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
           S+ LHANI HLMVNCYSLNS+GPT+E + GPRR++ VY +SAIASSAMSY FC +PAVGA
Sbjct: 161 SSVLHANIGHLMVNCYSLNSVGPTIENLSGPRRFIAVYLTSAIASSAMSYWFCRAPAVGA 220

Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
           SGAIFGLVGS AVF++RHR ++GG KE+LQ++AKVI  NM IGLL KGIDNW
Sbjct: 221 SGAIFGLVGSLAVFVIRHRRMIGGAKEDLQNIAKVIFLNMMIGLLTKGIDNW 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448034|ref|XP_002273377.1| PREDICTED: rhomboid protease gluP [Vitis vinifera] gi|298204568|emb|CBI23843.3| unnamed protein product [Vitis vinifera]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/277 (59%), Positives = 203/277 (73%), Gaps = 10/277 (3%)

Query: 21  TRPPLNLITTTAKHSLSVSLSRRL---LHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWC 77
           +R PL+ +  T  H ++ + S RL   +H   +H    L SS K+L+ L H+P LK+ W 
Sbjct: 10  SRFPLSKVGPTPAHLITTAASLRLGHFIHRQYIHLGFFLRSSFKRLAHLAHVPGLKNIWF 69

Query: 78  ENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKNSGHEGTSHLDTARTNLFIGRQW 133
             A +F G++F    +D+F+++ S    FF G  TRK S  EG S+ +  R N   GRQW
Sbjct: 70  GKAIQFQGISF---PSDSFSATCSSYLYFFGGEETRKGSRDEGMSYSEAPRRNSLRGRQW 126

Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
           TNIL+A+NVLV+I Q ATQ KLLLWGAKINSLIDKGQFWRLATS+FLHANI HLMVNC+S
Sbjct: 127 TNILIAINVLVFIGQAATQGKLLLWGAKINSLIDKGQFWRLATSSFLHANIGHLMVNCFS 186

Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMR 253
           LNS+GPT+E + GPRRYL VYF+SAIASSAMSY  C  PAVGASGAIFGLVGS AVF+MR
Sbjct: 187 LNSVGPTVENLSGPRRYLAVYFTSAIASSAMSYWLCKGPAVGASGAIFGLVGSVAVFMMR 246

Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
           HR ++G  KE LQH+A+VI+ NM IG L KGIDNWGH
Sbjct: 247 HRGLVGDSKESLQHIARVIVLNMVIGCLSKGIDNWGH 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807582|ref|NP_001242663.1| uncharacterized protein LOC100805315 [Glycine max] gi|255640088|gb|ACU20335.1| unknown [Glycine max]

 Score =  296 bits (758), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 159/270 (58%), Positives = 186/270 (68%), Gaps = 7/270 (2%)

Query: 24  PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
           PL+LI T A       L RR  HH  L    LLHS  KKL+ L HI RL D+WC+  F+ 
Sbjct: 22  PLDLIATAASLHFGHLLRRRATHH--LRLGVLLHSCFKKLAPLTHIFRLNDKWCQRCFQL 79

Query: 84  NGVNFFRFTNDAFASSLSFFNGGGTRKNSG-----HEGTSHLDTARTNLFIGRQWTNILL 138
           NG+N+ + +     SS S           G       G S+   +  + F GR+WT ILL
Sbjct: 80  NGLNYLQLSTGDLTSSWSTSFSFFNGGGDGGRRYGKAGMSNSKMSGKDPFNGRKWTEILL 139

Query: 139 AVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIG 198
           A NVL YIAQ ATQ KLLLWGAKINSLIDKGQ WRLATS+FLHANI HL+VNCYSLNS+G
Sbjct: 140 AANVLFYIAQLATQGKLLLWGAKINSLIDKGQLWRLATSSFLHANIGHLLVNCYSLNSVG 199

Query: 199 PTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
           PT+E   GPRR+L VYF SAIASSA SY FC  PAVGASGAIFGLVGS AVF++RH++++
Sbjct: 200 PTVESFSGPRRFLAVYFISAIASSATSYWFCRMPAVGASGAIFGLVGSVAVFVLRHKDLV 259

Query: 259 GGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
           GGGK +LQH+A+VI  NM IGLL  GIDNW
Sbjct: 260 GGGKRDLQHIAQVIALNMVIGLLSTGIDNW 289

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452411|ref|XP_003596482.1| Rhomboid protease gluP [Medicago truncatula] gi|355485530|gb|AES66733.1| Rhomboid protease gluP [Medicago truncatula]

 Score =  290 bits (742), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 154/269 (57%), Positives = 196/269 (72%), Gaps = 16/269 (5%)

Query: 24  PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
           PL++I T A    S  +S RL  H       LL S  +KL+    + RLKD+WC+   + 
Sbjct: 18  PLDIIATAASFHFSHRVSHRLRLHF------LLRSCFQKLA---PVFRLKDKWCQKYLQL 68

Query: 84  NGVNFFRFTND----AFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLA 139
            G+N+ + ++D    A ++S SFFNGG    +SG+  +     +R N F GR+WTNILLA
Sbjct: 69  KGLNYLQLSSDGLTSACSTSFSFFNGGRPEASSGNSDS---KMSRKNPFNGRKWTNILLA 125

Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP 199
            NVL Y+AQ ATQ KLL WGAK+NSLIDKGQ WRL TS+FLHANI HLM+NCYSLNS+GP
Sbjct: 126 ANVLFYVAQLATQGKLLSWGAKVNSLIDKGQVWRLVTSSFLHANIGHLMINCYSLNSVGP 185

Query: 200 TMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILG 259
           T+E   GPRRYL +YF+S+IAS+AMSYRFC  PAVGASGAIFGLVGS AVF++RH++++G
Sbjct: 186 TVESFSGPRRYLAIYFASSIASAAMSYRFCKMPAVGASGAIFGLVGSVAVFVLRHKDLVG 245

Query: 260 GGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
           GGK++LQH+A+VI  N+AIGL   GIDNW
Sbjct: 246 GGKKDLQHIAQVIALNLAIGLSSTGIDNW 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500820|gb|AFK38476.1| unknown [Medicago truncatula]

 Score =  287 bits (734), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 153/269 (56%), Positives = 195/269 (72%), Gaps = 16/269 (5%)

Query: 24  PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
           PL++I T A    S  +S RL  H       LL S  +KL+    + RLKD+WC+   + 
Sbjct: 18  PLDIIATAASFHFSHRVSHRLRLHF------LLRSCFQKLA---PVFRLKDKWCQKYLQL 68

Query: 84  NGVNFFRFTND----AFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLA 139
            G+N+ + ++D    A ++S SFFNGG    +SG+  +     +R N F GR+WTNILLA
Sbjct: 69  KGLNYLQLSSDGLTSACSTSFSFFNGGRPEASSGNSDS---KMSRKNPFNGRKWTNILLA 125

Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP 199
            NVL Y+AQ ATQ KLL WGAK+NSLIDKGQ WRL TS+FLHANI HLM+NCYSLNS+GP
Sbjct: 126 ANVLFYVAQLATQGKLLSWGAKVNSLIDKGQVWRLVTSSFLHANIGHLMINCYSLNSVGP 185

Query: 200 TMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILG 259
           T+E   GPRRYL +YF+S+IAS+AMSYRFC  PAVGASGAIFGLVGS AVF++RH++++G
Sbjct: 186 TVESFSGPRRYLAIYFASSIASAAMSYRFCKMPAVGASGAIFGLVGSVAVFVLRHKDLVG 245

Query: 260 GGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
           GG ++LQH+A+VI  N+AIGL   GIDNW
Sbjct: 246 GGIKDLQHIAQVIALNLAIGLSPTGIDNW 274

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182855|ref|NP_001185093.1| RHOMBOID-like protein 10 [Arabidopsis thaliana] gi|332192482|gb|AEE30603.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/269 (52%), Positives = 185/269 (68%), Gaps = 8/269 (2%)

Query: 30  TTAKHSLSVSLSRRLLHHHPLHARRLLH--SSVKKLSRLCHIPRLKDQWCENAFRFNGVN 87
           +TA    + + S    HH   H R   H  SS+KKL       R+K    +  F FNG N
Sbjct: 18  STAFRGFATAASVHACHHVSRHLRLDFHLRSSLKKLQHFSDDARMKFARYQRVFVFNGAN 77

Query: 88  FFRFTNDAFASSLS----FFNGGGTRKN--SGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
           F +   D   S  S    FFNGG +R N   G EG+S+ +T++ N   GR+WTN+LLA+N
Sbjct: 78  FLKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAIN 137

Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
           V++YIAQ A+  K+L WGAKINSLI++GQ WRLAT++ LHAN  HLM+NCYSLNSIGPT 
Sbjct: 138 VIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTA 197

Query: 202 EKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG 261
           E + GP+R+L VY +SA+ASSAMSY F  +P+VGASGAIFGLVGS AVF++RH+ ++ GG
Sbjct: 198 ESLGGPKRFLAVYLTSAVASSAMSYWFNKAPSVGASGAIFGLVGSVAVFVIRHKQMVRGG 257

Query: 262 KEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
            E+L  +A++I  NMA+GL+ + IDNWGH
Sbjct: 258 NEDLMQIAQIIALNMAMGLMSRRIDNWGH 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689150|ref|NP_173900.2| RHOMBOID-like protein 10 [Arabidopsis thaliana] gi|332192481|gb|AEE30602.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]

 Score =  264 bits (674), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 140/276 (50%), Positives = 184/276 (66%), Gaps = 15/276 (5%)

Query: 30  TTAKHSLSVSLSRRLLHHHPLHARRLLH--SSVKKLSRLCHIPRLKDQWCENAFRFNGVN 87
           +TA    + + S    HH   H R   H  SS+KKL       R+K    +  F FNG N
Sbjct: 18  STAFRGFATAASVHACHHVSRHLRLDFHLRSSLKKLQHFSDDARMKFARYQRVFVFNGAN 77

Query: 88  FFRFTNDAFASSLS----FFNGGGTRKN--SGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
           F +   D   S  S    FFNGG +R N   G EG+S+ +T++ N   GR+WTN+LLA+N
Sbjct: 78  FLKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAIN 137

Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
           V++YIAQ A+  K+L WGAKINSLI++GQ WRLAT++ LHAN  HLM+NCYSLNSIGPT 
Sbjct: 138 VIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTA 197

Query: 202 EKICGPRRYLGVYFSSAIAS-------SAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRH 254
           E + GP+R+L VY +SA+A        SAMSY F  +P+VGASGAIFGLVGS AVF++RH
Sbjct: 198 ESLGGPKRFLAVYLTSAVAKPILRVLGSAMSYWFNKAPSVGASGAIFGLVGSVAVFVIRH 257

Query: 255 RNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
           + ++ GG E+L  +A++I  NMA+GL+ + IDNWGH
Sbjct: 258 KQMVRGGNEDLMQIAQIIALNMAMGLMSRRIDNWGH 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498512|gb|AFK37322.1| unknown [Lotus japonicus]

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 123/163 (75%), Positives = 143/163 (87%)

Query: 126 NLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIA 185
           N F  R+WTNILLA NVL +IAQ ATQ KLLLWGAK+NSLIDKGQ WRLATS+FLHANI 
Sbjct: 5   NPFNRRKWTNILLAANVLFFIAQLATQGKLLLWGAKVNSLIDKGQIWRLATSSFLHANIG 64

Query: 186 HLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
           HLM+NC+SLNS+GPT+E+  GPRR+L VYF SAIASSAMSY FC  PAVGASGAIFGLVG
Sbjct: 65  HLMINCFSLNSVGPTVERFSGPRRFLAVYFISAIASSAMSYWFCKMPAVGASGAIFGLVG 124

Query: 246 SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
           S AVF++RHR+I+GGGKE+LQH+A+VI+ NM IG+L +GIDNW
Sbjct: 125 SVAVFVLRHRDIVGGGKEDLQHIARVIVLNMVIGILSRGIDNW 167

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
TAIR|locus:2032940	343	RBL10 "RHOMBOID-like protein 1	0.757	0.673	0.532	1.2e-63
UNIPROTKB|Q8EI50	528	SO_1000 "Rhomboid protease" [S	0.527	0.304	0.345	3.8e-16
TIGR_CMR|SO_1000	528	SO_1000 "rhomboid family prote	0.527	0.304	0.345	3.8e-16
DICTYBASE|DDB_G0295849	489	DDB_G0295849 "rhomboid family	0.445	0.278	0.350	9.3e-15
UNIPROTKB|Q74DX7	279	GSU1188 "Rhomboid-related memb	0.442	0.483	0.316	5.5e-14
TIGR_CMR|GSU_1188	279	GSU_1188 "rhomboid family prot	0.442	0.483	0.316	5.5e-14
TAIR|locus:2182925	346	RBL3 "RHOMBOID-like protein 3"	0.416	0.367	0.387	1.1e-13
UNIPROTKB|Q81VF8	190	BAS0235 "Rhomboid family prote	0.383	0.615	0.305	1.7e-12
TIGR_CMR|BA_0249	190	BA_0249 "rhomboid family prote	0.383	0.615	0.305	1.7e-12
TAIR|locus:2159808	434	AT5G38510 [Arabidopsis thalian	0.429	0.301	0.323	2e-12

TAIR|locus:2032940 RBL10 "RHOMBOID-like protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 130/244 (53%), Positives = 171/244 (70%)

Query:    60 VKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKN--SG 113
             +KKL       R+K    +  F FNG NF +   D   S  S    FFNGG +R N   G
Sbjct:    50 LKKLQHFSDDARMKFARYQRVFVFNGANFLKSRVDIRLSQSSPFVCFFNGGESRLNPRGG 109

Query:   114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWR 173
              EG+S+ +T++ N   GR+WTN+LLA+NV++YIAQ A+  K+L WGAKINSLI++GQ WR
Sbjct:   110 EEGSSNPETSKRNTVNGRRWTNVLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWR 169

Query:   174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS-------SAMSY 226
             LAT++ LHAN  HLM+NCYSLNSIGPT E + GP+R+L VY +SA+A        SAMSY
Sbjct:   170 LATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVAKPILRVLGSAMSY 229

Query:   227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID 286
              F  +P+VGASGAIFGLVGS AVF++RH+ ++ GG E+L  +A++I  NMA+GL+ + ID
Sbjct:   230 WFNKAPSVGASGAIFGLVGSVAVFVIRHKQMVRGGNEDLMQIAQIIALNMAMGLMSRRID 289

Query:   287 NWGH 290
             NWGH
Sbjct:   290 NWGH 293

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0031969 "chloroplast membrane" evidence=IDA

UNIPROTKB|Q8EI50 SO_1000 "Rhomboid protease" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 209 (78.6 bits), Expect = 3.8e-16, P = 3.8e-16
 Identities = 59/171 (34%), Positives = 87/171 (50%)

Query:   129 IGRQWTNILLAVNVLVYIAQ-FATQ------DKLLL-WGAKINSLIDKGQFWRLATSAFL 180
             +G   T ILL   VL+++   FA+       + +LL WGA +  L+   Q WRL ++ FL
Sbjct:   332 VGFVITPILLLSKVLIFMLMVFASHHFITLPNSVLLDWGANLRQLVLDQQVWRLISNVFL 391

Query:   181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGA 239
             H  + HL+ N Y L   G  +E + G  R LGVY  S +A+S  S  +  +  ++GASGA
Sbjct:   392 HGGLMHLIFNLYGLFFAGIFLEPLLGKWRLLGVYLMSGLAASIASISWYEATISIGASGA 451

Query:   240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
             I GL G   ++I      L        HL   +  ++ +GLL  G+DN  H
Sbjct:   452 IMGLFGVLIMWIWMGSLPLATHMLLALHLTLFVSASLVMGLL-GGVDNAAH 501

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1000 SO_1000 "rhomboid family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 209 (78.6 bits), Expect = 3.8e-16, P = 3.8e-16
 Identities = 59/171 (34%), Positives = 87/171 (50%)

Query:   129 IGRQWTNILLAVNVLVYIAQ-FATQ------DKLLL-WGAKINSLIDKGQFWRLATSAFL 180
             +G   T ILL   VL+++   FA+       + +LL WGA +  L+   Q WRL ++ FL
Sbjct:   332 VGFVITPILLLSKVLIFMLMVFASHHFITLPNSVLLDWGANLRQLVLDQQVWRLISNVFL 391

Query:   181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGA 239
             H  + HL+ N Y L   G  +E + G  R LGVY  S +A+S  S  +  +  ++GASGA
Sbjct:   392 HGGLMHLIFNLYGLFFAGIFLEPLLGKWRLLGVYLMSGLAASIASISWYEATISIGASGA 451

Query:   240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
             I GL G   ++I      L        HL   +  ++ +GLL  G+DN  H
Sbjct:   452 IMGLFGVLIMWIWMGSLPLATHMLLALHLTLFVSASLVMGLL-GGVDNAAH 501

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0295849 DDB_G0295849 "rhomboid family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 202 (76.2 bits), Expect = 9.3e-15, P = 9.3e-15
 Identities = 48/137 (35%), Positives = 72/137 (52%)

Query:   155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
             LL  GAK + LI  G++WR  T  FLH  I H ++N  +   +G  +E+  G  R + +Y
Sbjct:   277 LLDVGAKYSPLILNGEWWRFFTPIFLHVGIFHYLMNMVTQLRVGMQLERAYGGHRIVPIY 336

Query:   215 FSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
                 +A +  S     NS  VGASGAIFG +G     ++R+ ++L         L   II
Sbjct:   337 LLCGVAGNLCSAIMLPNSVQVGASGAIFGFLGVLLTDLIRNWSVLAKPWLNFGSLLFSII 396

Query:   274 FNMAIGLLIKGIDNWGH 290
              + A+GL + G+DN+ H
Sbjct:   397 TSFAVGLFLPGVDNFAH 413

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=ISS

UNIPROTKB|Q74DX7 GSU1188 "Rhomboid-related membrane protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 178 (67.7 bits), Expect = 5.5e-14, Sum P(2) = 5.5e-14
 Identities = 45/142 (31%), Positives = 69/142 (48%)

Query:   152 QDKLLLWGAKINSLIDK-GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
             ++ LLL GA     ID+ G+FW L ++ +LH  + H+  N  +L  I P + +  G  R 
Sbjct:    88 RNSLLLLGATGVVPIDRFGRFWTLLSANYLHGGLLHIFFNMMALRQIAPLVAREYGTWRM 147

Query:   211 LGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG--KEELQHL 268
               +Y    +A   +SY       +GAS AI  L+GS   +      + G    KE    +
Sbjct:   148 FSIYTLGGVAGYVVSYLAGTGYTIGASCAICALIGSLLYYGKSRGGLYGQAVFKEVWGWV 207

Query:   269 AKVIIFNMAIGLLIKGIDNWGH 290
               + +F    GL++ GIDNWGH
Sbjct:   208 VGLFLF----GLIVPGIDNWGH 225

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1188 GSU_1188 "rhomboid family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 178 (67.7 bits), Expect = 5.5e-14, Sum P(2) = 5.5e-14
 Identities = 45/142 (31%), Positives = 69/142 (48%)

Query:   152 QDKLLLWGAKINSLIDK-GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
             ++ LLL GA     ID+ G+FW L ++ +LH  + H+  N  +L  I P + +  G  R 
Sbjct:    88 RNSLLLLGATGVVPIDRFGRFWTLLSANYLHGGLLHIFFNMMALRQIAPLVAREYGTWRM 147

Query:   211 LGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG--KEELQHL 268
               +Y    +A   +SY       +GAS AI  L+GS   +      + G    KE    +
Sbjct:   148 FSIYTLGGVAGYVVSYLAGTGYTIGASCAICALIGSLLYYGKSRGGLYGQAVFKEVWGWV 207

Query:   269 AKVIIFNMAIGLLIKGIDNWGH 290
               + +F    GL++ GIDNWGH
Sbjct:   208 VGLFLF----GLIVPGIDNWGH 225

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2182925 RBL3 "RHOMBOID-like protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 50/129 (38%), Positives = 71/129 (55%)

Query:   163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
             + +++K + WRL T  +LHA + HL  N  SL  IG  +E+  G  R   +Y  S I  S
Sbjct:   126 SKVVEKKEGWRLLTCIWLHAGVIHLGANMLSLVFIGIRLEQQFGFVRIGVIYLLSGIGGS 185

Query:   223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
              +S  F  NS +VGASGA+FGL+GS    +  +  I       L  L  VI+ N+AIG+L
Sbjct:   186 VLSSLFIRNSISVGASGALFGLLGSMLSELFTNWTIYSNKIAALLTLLFVILINLAIGIL 245

Query:   282 IKGIDNWGH 290
                +DN+ H
Sbjct:   246 -PHVDNFAH 253

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q81VF8 BAS0235 "Rhomboid family protein" [Bacillus anthracis (taxid:1392)]

 Score = 148 (57.2 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 37/121 (30%), Positives = 63/121 (52%)

Query:   138 LAVNVL-VYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNS 196
             +A+++L +        D  L   A  +  I  G++WRL TS F+H ++ H + N   L  
Sbjct:    13 IAISLLLIQFIMIMLGDFFLFPMAAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFV 72

Query:   197 IGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMRH 254
             +G ++EK  G   ++ ++F S I  +  SY       +  GASG IFGL+G+  +F++  
Sbjct:    73 LGSSIEKQLGRFSFIIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGA-QLFLLYS 131

Query:   255 R 255
             R
Sbjct:   132 R 132

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_0249 BA_0249 "rhomboid family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 148 (57.2 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 37/121 (30%), Positives = 63/121 (52%)

Query:   138 LAVNVL-VYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNS 196
             +A+++L +        D  L   A  +  I  G++WRL TS F+H ++ H + N   L  
Sbjct:    13 IAISLLLIQFIMIMLGDFFLFPMAAYHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFV 72

Query:   197 IGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAV--GASGAIFGLVGSFAVFIMRH 254
             +G ++EK  G   ++ ++F S I  +  SY       +  GASG IFGL+G+  +F++  
Sbjct:    73 LGSSIEKQLGRFSFIIIFFLSGILGNIFSYLIMPHEYIHAGASGGIFGLLGA-QLFLLYS 131

Query:   255 R 255
             R
Sbjct:   132 R 132

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2159808 AT5G38510 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 44/136 (32%), Positives = 75/136 (55%)

Query:   156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
             LL+GAKIN LI  G++WRL T  FLH+ I H+ ++ ++L + GP + +  G   +  +Y 
Sbjct:   216 LLYGAKINDLILAGEWWRLVTPMFLHSGIPHVALSSWALLTFGPKVCRDYGLFTFCLIYI 275

Query:   216 SSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
                ++ + MS+     P VG +G  F L+G++ V   +++ ++   + E     K II  
Sbjct:   276 LGGVSGNFMSFLHTADPTVGGTGPAFALIGAWLVDQNQNKEMIKSNEYE-DLFQKAIIMT 334

Query:   276 MAIGLLIK--G-IDNW 288
                GL++   G ID+W
Sbjct:   335 -GFGLILSHFGPIDDW 349

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.105	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	305
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	2e-29
COG0705	228	COG0705, COG0705, Membrane associated serine prote	2e-18
PTZ00101	278	PTZ00101, PTZ00101, rhomboid-1 protease; Provision	2e-12
TIGR03902	154	TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CT	2e-07
TIGR04239	271	TIGR04239, rhombo_GlpG, rhomboid family protease G	2e-07
PRK10907	276	PRK10907, PRK10907, intramembrane serine protease	8e-06

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score =  108 bits (273), Expect = 2e-29
 Identities = 56/128 (43%), Positives = 78/128 (60%), Gaps = 3/128 (2%)

Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
           L+ +GQ WRL TS FLHA   HL+ N  +L   G  +E+I G  R+L +Y  S +A S +
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLL 60

Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
           SY F   +SP+VGASGAIFGL+G+  V + R+R +L      L  L  +I+ N+ +G L 
Sbjct: 61  SYLFSPASSPSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLGIILLNLLLGFLP 120

Query: 283 KGIDNWGH 290
            GI N+ H
Sbjct: 121 -GISNFAH 127

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 81.7 bits (202), Expect = 2e-18
 Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 25/186 (13%)

Query: 128 FIGRQW--TNILLAVNVLVYIAQ-----------FATQDKLLLWGAKINSLIDKGQFWRL 174
            + R    T  L+ +N+LV++ +                   L+   +   + + Q WRL
Sbjct: 12  RLIRAPPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRL 71

Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF---CNS 231
            T+ FLHA   HL+ N  +L   G  +E+  G  R+L  Y  S + +      F     +
Sbjct: 72  ITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGA 131

Query: 232 PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII-------FNMAIGLLIKG 284
           P++GASGAIFGL+G  A F++     +      L   A ++I            G     
Sbjct: 132 PSLGASGAIFGLLG--AYFLLFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPS 189

Query: 285 IDNWGH 290
           +    H
Sbjct: 190 VAWSAH 195

Length = 228

>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 21/150 (14%)

Query: 127 LFIGRQWTNILLAVNV---LVYI-------AQFAT-QDKLLL-WGAKINSLIDKGQFWRL 174
           +F    W + ++A+++   +V+I       A F T  D LL+  GA + S I +G+  RL
Sbjct: 46  IFPHFTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRL 105

Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR--FCNSP 232
               FLHANI H   N +    +G T+EK  G  + + +YF + I  + +S    +C   
Sbjct: 106 ILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYC-PI 164

Query: 233 AVGASGAIFGLVG------SFAVFIMRHRN 256
            VGAS +  GL+G           ++RHR 
Sbjct: 165 KVGASTSGMGLLGIVTSELILLWHVIRHRE 194

Length = 278

>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine protease

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA 223
           + I +G++WRL T  F+H N  HL++N   L  +    E+    RR L +    ++  S 
Sbjct: 9   AAILEGEWWRLLTGHFVHLNWWHLLMNLAGLLLLWLLFERHLRARRLLLLLLLLSLLISL 68

Query: 224 MSYRFCNSPA--VGASGAIFGLVGSFAVFIMRHR 255
               F  S    VG SG + GL    A+  +R+ 
Sbjct: 69  GLLLFLPSLQWYVGLSGVLHGLFAWGALRDIRYG 102

This model describes a rhomboid-like intramembrane serine protease. Its species distribution closely matches model TIGR03501, GlyGly-CTERM, which describes a protein targeting domain analogous to LPXTG and PEP-CTERM. In a number of species (Ralstonia eutropha ,R. metallidurans, R. solanacearum, Marinobacter aquaeolei, etc) with just one GlyGly-CTERM protein (i.e., a dedicated system), the rhombosortase and GlyGly-CTERM genes are adjacent. Length = 154

>gnl|CDD|234518 TIGR04239, rhombo_GlpG, rhomboid family protease GlpG

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 1/113 (0%)

Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T  ++A+ +LV++  Q     ++    A       + Q WR  T A LH ++ H++ N  
Sbjct: 97  TLSVMALCILVFLLMQLGGDQQVFSALAFPADPSQQSQLWRWFTPALLHFSLLHIIFNLL 156

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + L ++  SA+ S+   Y        G SG ++ LVG
Sbjct: 157 WWWYLGGQIEKRLGSGKLLVLFLVSALLSNWAQYLVSGPNFGGLSGVVYALVG 209

GlpG in E. coli is a rhomboid family intramembrane serine protease that has been extensively characterized as a proxy for rhomboid family proteases in animals. It efficiently cleaves eukaryote-derived model substrates. This multiple membrane-spanning protein excludes inappropriate substrates from access to its cleavage site, and shows activity against truncated versions, but not full-length versions, of the E. coli multidrug transporter MdfA. This finding suggests a housekeeping function in removing faulty proteins. In contrast, several eukaryotic rhomboid family proteases release peptide hormones for signaling functions, and the Shewanella and Vibrio protein rhombosortase appears to be part of a protein-sorting system, cleaving a C-terminal anchoring helix domain. Length = 271

>gnl|CDD|182828 PRK10907, PRK10907, intramembrane serine protease GlpG; Provisional

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 1/113 (0%)

Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T  ++   V+V+I  Q      ++LW A       K + WR  T A LH ++ H++ N  
Sbjct: 97  TLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLL 156

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G
Sbjct: 157 WWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSGPWFGGLSGVVYALMG 209

Length = 276

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
PTZ00101	278	rhomboid-1 protease; Provisional	99.95
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.95
COG0705	228	Membrane associated serine protease [Amino acid tr	99.91
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	99.87
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.84
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.72
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	99.5
KOG2980	310	consensus Integral membrane protease of the rhombo	98.89
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	98.76
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.33
KOG0858	239	consensus Predicted membrane protein [Function unk	98.27
COG5291	313	Predicted membrane protein [Function unknown]	96.88
KOG2890	326	consensus Predicted membrane protein [Function unk	96.84
KOG4463	323	consensus Uncharacterized conserved protein [Funct	94.82

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.95  E-value=1.3e-27  Score=223.12  Aligned_cols=171  Identities=23%  Similarity=0.288  Sum_probs=132.1

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHhch---------HHHHHhhhccccccccCCcchhhhhccccCCHHHHHHHHHHHHHHH
Q 021954          128 FIGRQWTNILLAVNVLVYIAQFATQ---------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIG  198 (305)
Q Consensus       128 ~~~~pvT~~LI~i~vlvfll~~~~~---------~~l~~~g~~~~~~i~~gq~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G  198 (305)
                      .+.+.+|..++++++++|++.....         ..+..+|++.+..+.++||||++|++|+|.++.|+++||+.++.+|
T Consensus        50 f~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G  129 (278)
T PTZ00101         50 FTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMG  129 (278)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            4567889999999999999876521         2567788888888889999999999999999999999999999999


Q ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHHhcC-CceechHHHHHHHHHHHHHHHHhhhhhccCchhHHHHHHHHHHH--H
Q 021954          199 PTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIF--N  275 (305)
Q Consensus       199 ~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~-~~~vGaSGaVfGLlga~~~l~~~~~~~~~~~~~~l~~i~~~l~l--~  275 (305)
                      ..+|+.+|++|++.+|++||+.|++++..+.+ ..++||||++||++|++.......+.....+......+....++  .
T Consensus       130 ~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiGa~~~~lil~w~~~~~~~~~~~~~i~~~li~~~  209 (278)
T PTZ00101        130 FTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILLWHVIRHRERVVFNIIFFSLISFF  209 (278)
T ss_pred             HHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999987754 56899999999999999865544443222211111111122222  1


Q ss_pred             HHHHhccCChhhHhcchhhHHHH
Q 021954          276 MAIGLLIKGIDNWGHDMPGRRVP  298 (305)
Q Consensus       276 lv~gll~~~i~~~aHLGGa~~~~  298 (305)
                      +...+..+++|++||+||.+.|.
T Consensus       210 l~~~~~g~~Id~~aHlGG~i~G~  232 (278)
T PTZ00101        210 YYFTFNGSNIDHVGHLGGLLSGI  232 (278)
T ss_pred             HHHhcCCCCccHHHHHHHHHHHH
Confidence            22234468899999999954443

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.95  E-value=4.1e-27  Score=219.82  Aligned_cols=170  Identities=21%  Similarity=0.163  Sum_probs=129.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhchH-HHHHhhhccccccccCCcchhhhhccccCCHHHHHHHHHHHHHHHHHHHHhcch
Q 021954          129 IGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP  207 (305)
Q Consensus       129 ~~~pvT~~LI~i~vlvfll~~~~~~-~l~~~g~~~~~~i~~gq~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~  207 (305)
                      +..|+|..++++|+++|++.....+ ....+...+.....++||||++|++|+|.|+.|+++||+++|.+|..+|+.+|+
T Consensus        92 ~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~  171 (276)
T PRK10907         92 RAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGS  171 (276)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence            3567999999999999999876543 233343333344568999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCceechHHHHHHHHHHHHHHHHhhhhhccCchhHHHHHHHHHHHHHH---HHhccCC
Q 021954          208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA---IGLLIKG  284 (305)
Q Consensus       208 ~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGLlga~~~l~~~~~~~~~~~~~~l~~i~~~l~l~lv---~gll~~~  284 (305)
                      ++++.+|+++++.|+++++++.+...+|+||+|||++|+......+.+......++   .+..++++.++   .+++.++
T Consensus       172 ~~~l~l~l~s~i~~~~~~~~~~~~~~gGaSGvVygL~g~~~~~~~~~p~~~~~lp~---~~~~f~llwl~~g~~~~~g~~  248 (276)
T PRK10907        172 GKLIVITLISALLSGWVQSKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLPR---GLIAFALLWLVAGYFDLFGMS  248 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHhccccccchhhhH---HHHHHHHHHHHHHHHHccCcc
Confidence            99999999999999999998887789999999999999866554333321111111   22222222233   3455678


Q ss_pred             hhhHhcchhhHHHHHhH
Q 021954          285 IDNWGHDMPGRRVPLQL  301 (305)
Q Consensus       285 i~~~aHLGGa~~~~~~a  301 (305)
                      |+|+||+||.+.|...+
T Consensus       249 Ian~AHlgGli~Gll~g  265 (276)
T PRK10907        249 IANAAHVAGLAVGLAMA  265 (276)
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            99999999966555543

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.91  E-value=2.6e-23  Score=188.36  Aligned_cols=170  Identities=27%  Similarity=0.378  Sum_probs=131.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhchHH-HHH-------hhhccccccccC---CcchhhhhccccCCHHHHHHHHHHHHHHH
Q 021954          130 GRQWTNILLAVNVLVYIAQFATQDK-LLL-------WGAKINSLIDKG---QFWRLATSAFLHANIAHLMVNCYSLNSIG  198 (305)
Q Consensus       130 ~~pvT~~LI~i~vlvfll~~~~~~~-l~~-------~g~~~~~~i~~g---q~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G  198 (305)
                      .++.|..++.+|+++|..+...... ...       .+..+.......   |+||++|++|+|.|+.|+++||+.+|.+|
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg   95 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG   95 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            5788999999999999999765432 111       222222222111   89999999999999999999999999999


Q ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHHhcC---CceechHHHHHHHHHHHHHHHHhhhhhccC---chhHHHHHHHHH
Q 021954          199 PTMEKICGPRRYLGVYFSSAIASSAMSYRFCN---SPAVGASGAIFGLVGSFAVFIMRHRNILGG---GKEELQHLAKVI  272 (305)
Q Consensus       199 ~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~---~~~vGaSGaVfGLlga~~~l~~~~~~~~~~---~~~~l~~i~~~l  272 (305)
                      ..+|+..|+.+|+.+|+++|+++++.+..+.+   .+.+||||+++|++++++...+..+.....   ++.....+..++
T Consensus        96 ~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  175 (228)
T COG0705          96 SNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWL  175 (228)
T ss_pred             HHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHHHHHHH
Confidence            99999999999999999999999999988874   369999999999999999999998754333   233334444455


Q ss_pred             HHHHHHHhccC--ChhhHhcchhhHHHHH
Q 021954          273 IFNMAIGLLIK--GIDNWGHDMPGRRVPL  299 (305)
Q Consensus       273 ~l~lv~gll~~--~i~~~aHLGGa~~~~~  299 (305)
                      ..+++......  +++++||++|.+.+..
T Consensus       176 ~~~~~~~~~~~~~~va~~aHl~G~i~G~l  204 (228)
T COG0705         176 LYSLFSGAGSFGPSVAWSAHLGGLIGGLL  204 (228)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            55555554443  6999999999655544

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.87  E-value=5.1e-23  Score=194.33  Aligned_cols=135  Identities=32%  Similarity=0.483  Sum_probs=121.1

Q ss_pred             hhhccccccccCCcchhhhhccccCCHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcC-Cceech
Q 021954          158 WGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGA  236 (305)
Q Consensus       158 ~g~~~~~~i~~gq~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~-~~~vGa  236 (305)
                      ++......++++|+||++|++|+|+|+.||++||+.+.++|..+|+..|.+|+..+|++++++|++++.++.+ ..+|||
T Consensus       106 ~~~~i~~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVGA  185 (316)
T KOG2289|consen  106 GGLLIYKPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVGA  185 (316)
T ss_pred             CCceecChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCceecc
Confidence            3445566778999999999999999999999999999999999999999999999999999999999999986 569999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHhccCChhhHhcchh
Q 021954          237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMP  293 (305)
Q Consensus       237 SGaVfGLlga~~~l~~~~~~~~~~~~~~l~~i~~~l~l~lv~gll~~~i~~~aHLGG  293 (305)
                      ||++|||+|+...-...++..+......+..++.++.+++-+|+. +.+|+++|+||
T Consensus       186 SggvfaLlgA~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~~G~~-~~~~~~~h~gg  241 (316)
T KOG2289|consen  186 SGGVFALLGAHLSNLLTNWTIMKNKFAALRTLLIIIFINLDLGFA-PYVDNFAHIGG  241 (316)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHhhccc-cceeccccccc
Confidence            999999999999999999988877655677777777888888886 46899999998

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.84  E-value=1.6e-21  Score=163.34  Aligned_cols=135  Identities=35%  Similarity=0.506  Sum_probs=99.4

Q ss_pred             cccCCcchhhhhccccCCHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcCC--ceechHHHHHHH
Q 021954          166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGL  243 (305)
Q Consensus       166 i~~gq~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~~--~~vGaSGaVfGL  243 (305)
                      ++++|+||++|++|+|.|+.|+++|++.++.+|..+|+.+|+++++.+|+.+++.+++...+..+.  +.+|+||+++|+
T Consensus         1 ~~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l   80 (145)
T PF01694_consen    1 VQNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGL   80 (145)
T ss_dssp             -GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHH
T ss_pred             CCCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHH
Confidence            368999999999999999999999999999999999999999999999999999999999887653  599999999999


Q ss_pred             HHHHHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHhccCChhhHhcchhhHHHHHhH
Q 021954          244 VGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQL  301 (305)
Q Consensus       244 lga~~~l~~~~~~~~~~~~~~l~~i~~~l~l~lv~gll~~~i~~~aHLGGa~~~~~~a  301 (305)
                      +++.+...+++++...............+.+.+..+. .+++++.+|++|+..|....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~hl~G~~~G~~~~  137 (145)
T PF01694_consen   81 LGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF-IPNISFLGHLGGFLAGLLYG  137 (145)
T ss_dssp             HHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS-SSTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHH
Confidence            9999999998864333211111111111222222223 68999999999966665443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.72  E-value=5.4e-17  Score=148.56  Aligned_cols=172  Identities=20%  Similarity=0.209  Sum_probs=133.0

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHhchHHHHHhhhccccccccCCcchhhhhccccCCHHHHHHHHHHHHHHHHHHHHhcc-
Q 021954          128 FIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICG-  206 (305)
Q Consensus       128 ~~~~pvT~~LI~i~vlvfll~~~~~~~l~~~g~~~~~~i~~gq~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G-  206 (305)
                      -+.+.+|..+..++.++|+......-. ..++ .......+.|.||++||+++|.+..|+++||+++|..|..+|+..| 
T Consensus        12 ~~~p~~ts~~~~~~~~i~lv~~~~~i~-~~~~-l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~   89 (258)
T KOG2632|consen   12 MKIPLLTSIVVVLAILIYLVSFFPGIV-EVLG-LPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGT   89 (258)
T ss_pred             ccchHHHHHHHHHHHHHHHHhccchhh-hHhc-CCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccc
Confidence            445788999999999999988776433 3333 3445667899999999999999999999999999999999999999 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhc----------CCceechHHHHHHHHHHHHHHHHhhhhhccCchhHHHHHHHHHHHHH
Q 021954          207 PRRYLGVYFSSAIASSAMSYRFC----------NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNM  276 (305)
Q Consensus       207 ~~~fl~lyl~sgi~g~l~s~l~~----------~~~~vGaSGaVfGLlga~~~l~~~~~~~~~~~~~~l~~i~~~l~l~l  276 (305)
                      +.+++....+.+++.+++.++..          ....+|.||+.|++++......+.++..++..- .........+...
T Consensus        90 t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~-siP~~l~Pw~lLi  168 (258)
T KOG2632|consen   90 TVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLF-SIPIVLAPWALLI  168 (258)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccc-cccHHHHHHHHHH
Confidence            88999888899999988876643          245799999999999998888877774433321 1122222233334


Q ss_pred             HHHhccCChhhHhcchhhHHHHHhHh
Q 021954          277 AIGLLIKGIDNWGHDMPGRRVPLQLL  302 (305)
Q Consensus       277 v~gll~~~i~~~aHLGGa~~~~~~a~  302 (305)
                      ...++.|+.|++||++|..++..-++
T Consensus       169 ~~~~lvp~aSFlghl~GllvG~ay~~  194 (258)
T KOG2632|consen  169 ATQILVPQASFLGHLCGLLVGYAYAF  194 (258)
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHH
Confidence            45577899999999999777766555

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.50  E-value=1.4e-14  Score=140.66  Aligned_cols=131  Identities=31%  Similarity=0.451  Sum_probs=110.4

Q ss_pred             cCCcchhhhhccccCCHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcC-CceechHHHHHHHHHH
Q 021954          168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGS  246 (305)
Q Consensus       168 ~gq~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~-~~~vGaSGaVfGLlga  246 (305)
                      ..|+||++|+.|+|+++.|++..+...+.+..-+|+..|+.|..++|++||+.||+++.++.+ .+.||.||+-+|+++.
T Consensus       448 PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~~eVgPa~sQ~Gila~  527 (652)
T KOG2290|consen  448 PDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYRAEVGPAGSQFGILAC  527 (652)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccccccCCcccccchHHH
Confidence            569999999999999999999999999999999999999999999999999999999999876 5799999999999999


Q ss_pred             HHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHhccCChhhHhcchhhHHHHHh
Q 021954          247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHDMPGRRVPLQ  300 (305)
Q Consensus       247 ~~~l~~~~~~~~~~~~~~l~~i~~~l~l~lv~gll~~~i~~~aHLGGa~~~~~~  300 (305)
                      ..+-.++.|.++..+......+++. .+.+.+|++ |.||||+|+.|.+.|...
T Consensus       528 l~vEl~qs~~il~~~w~a~~~Lia~-~L~L~iGli-PWiDN~aHlfG~i~GLl~  579 (652)
T KOG2290|consen  528 LFVELFQSWQILERPWRAFFHLIAT-LLVLCIGLI-PWIDNWAHLFGTIFGLLT  579 (652)
T ss_pred             HHHHHHhhhHhhhhHHHHHHHHHHH-HHHHHhccc-cchhhHHHHHHHHHHHHH
Confidence            9999999998777643333333333 333445664 789999999996665543

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=98.89  E-value=7.8e-10  Score=103.50  Aligned_cols=167  Identities=18%  Similarity=0.178  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHHhchHH--HHHhhhccccccccCCcchhhhhccccCCHHHHHHHHHHHHHHHH-HHHHhcchhH
Q 021954          133 WTNILLAVNVLVYIAQFATQDK--LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP-TMEKICGPRR  209 (305)
Q Consensus       133 vT~~LI~i~vlvfll~~~~~~~--l~~~g~~~~~~i~~gq~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G~-~lE~~~G~~~  209 (305)
                      +...++++|+.+|.+|.+....  ...|..+.+  ....-.|.++++.|.|.+.+|+..||+.++.+.. .+....|...
T Consensus       117 ~v~~ll~~n~~vf~lWrv~~~~~~~~~~mls~~--~~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~  194 (310)
T KOG2980|consen  117 VVFGLLIANAFVFTLWRVPQKQFTMIPWMLSRN--AYKTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSLGFSS  194 (310)
T ss_pred             chhHHHHHHHHHHHHHHhcchhhhhhhHHhhcc--cccccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCcchhh
Confidence            7888999999999999987542  344443322  2344567799999999999999999999999988 7888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhc-----CCceechHHHHHHHHHHHHHHHHhhhhhccCc-hhHH--HHHH-HHHHHHHHHHh
Q 021954          210 YLGVYFSSAIASSAMSYRFC-----NSPAVGASGAIFGLVGSFAVFIMRHRNILGGG-KEEL--QHLA-KVIIFNMAIGL  280 (305)
Q Consensus       210 fl~lyl~sgi~g~l~s~l~~-----~~~~vGaSGaVfGLlga~~~l~~~~~~~~~~~-~~~l--~~i~-~~l~l~lv~gl  280 (305)
                      +.++|+.++..+........     ..+..||||+++++++..+.++|+.+..+... +...  ...+ .++...+..-.
T Consensus       195 ~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~  274 (310)
T KOG2980|consen  195 FFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLI  274 (310)
T ss_pred             cccceeccccccceeEeeccccccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchhHHHHHHHhhhccee
Confidence            99999955566555544321     25689999999999999999999888544432 1111  1111 11111111111


Q ss_pred             c-cCChhhHhcchhhHHHHHhH
Q 021954          281 L-IKGIDNWGHDMPGRRVPLQL  301 (305)
Q Consensus       281 l-~~~i~~~aHLGGa~~~~~~a  301 (305)
                      + ...-|+.+|++|.+.++-.+
T Consensus       275 l~~~~~n~~Ah~~gsl~Gv~va  296 (310)
T KOG2980|consen  275 LGWGFFNHAAHLSGSLFGVVVA  296 (310)
T ss_pred             eccccchhHhhhcchHHHHHHH
Confidence            1 24567889999987776544

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=98.76  E-value=6e-08  Score=86.64  Aligned_cols=165  Identities=19%  Similarity=0.121  Sum_probs=105.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhchHHHHHhhhccccccccCCcchhhhhccccCCH-HHHHHHHHHHHHHHHHHHHh-cc-h
Q 021954          131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI-AHLMVNCYSLNSIGPTMEKI-CG-P  207 (305)
Q Consensus       131 ~pvT~~LI~i~vlvfll~~~~~~~l~~~g~~~~~~i~~gq~wRL~Ts~FlH~~~-~HLl~Nm~~L~~~G~~lE~~-~G-~  207 (305)
                      ||+|+.+++.++++.++.........+....++..+++.|+||++|+.|.-++. .++++|++.++..++.+|+. +. +
T Consensus         2 PpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~   81 (197)
T PF04511_consen    2 PPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGR   81 (197)
T ss_pred             ChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCC
Confidence            689999999999999888776444444445556666789999999999987766 79999999999999999998 32 3


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHhcCC----ceechHHHHHHHHHHHHHHHHhhhh-hccCchhHHHHHHHHHHHHHHHHhc
Q 021954          208 -RRYLGVYFSSAIASSAMSYRFCNS----PAVGASGAIFGLVGSFAVFIMRHRN-ILGGGKEELQHLAKVIIFNMAIGLL  281 (305)
Q Consensus       208 -~~fl~lyl~sgi~g~l~s~l~~~~----~~vGaSGaVfGLlga~~~l~~~~~~-~~~~~~~~l~~i~~~l~l~lv~gll  281 (305)
                       .+|+...+.+++.-.+++.+....    ...| +.-.+.+.=.++-..|+.+. .++..+.+...+..+.   +++.++
T Consensus        82 ~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~-~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~~---~~~~~l  157 (197)
T PF04511_consen   82 SADYLWFLLFGASLILILSLLIGPYFFNIPFLG-SSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWVL---LAFSLL  157 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHHH---HHHHHH
Confidence             578887777777666666554321    1222 33444444444444555553 3333333333333222   223333


Q ss_pred             cCChhhHhcchhhHHHHHhH
Q 021954          282 IKGIDNWGHDMPGRRVPLQL  301 (305)
Q Consensus       282 ~~~i~~~aHLGGa~~~~~~a  301 (305)
                      ..+.+...++-|  +.++++
T Consensus       158 ~~~~~~~~~l~G--i~~Ghl  175 (197)
T PF04511_consen  158 FGGSSPIPDLLG--ILVGHL  175 (197)
T ss_pred             hCCCcHHHHHHH--HHHHHH
Confidence            333455677777  444443

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.33  E-value=4.1e-07  Score=72.93  Aligned_cols=76  Identities=25%  Similarity=0.447  Sum_probs=64.3

Q ss_pred             CcchhhhhccccCCHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhc--------C-----Cceech
Q 021954          170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--------N-----SPAVGA  236 (305)
Q Consensus       170 q~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~--------~-----~~~vGa  236 (305)
                      .+|+++|+.|++.++..+++|.+.++..|+.+|+.+|+++++..++...+.+|+......        +     .+.-|.
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~~i~G~   86 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFVPISGF   86 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence            799999999999999999999999999999999999999999999988888888766531        1     235567


Q ss_pred             HHHHHHHHH
Q 021954          237 SGAIFGLVG  245 (305)
Q Consensus       237 SGaVfGLlg  245 (305)
                      .|.+.|++.
T Consensus        87 ~~~~~g~lV   95 (99)
T PF08551_consen   87 MGVLAGFLV   95 (99)
T ss_pred             HHhHhheEE
Confidence            777766654

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=98.27  E-value=3e-06  Score=77.34  Aligned_cols=98  Identities=15%  Similarity=0.079  Sum_probs=80.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhchHHHHHhhhccccccccCCcchhhhhccccCC-HHHHHHHHHHHHHHHHHHHHhc--
Q 021954          129 IGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN-IAHLMVNCYSLNSIGPTMEKIC--  205 (305)
Q Consensus       129 ~~~pvT~~LI~i~vlvfll~~~~~~~l~~~g~~~~~~i~~gq~wRL~Ts~FlH~~-~~HLl~Nm~~L~~~G~~lE~~~--  205 (305)
                      +.||+|+....+|++.-++....-.+..+.-.+++.++++.|+||++|+.+.-+. -.|.++||+.++-..+.+|+-.  
T Consensus        11 ~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~   90 (239)
T KOG0858|consen   11 QIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFR   90 (239)
T ss_pred             cCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            4579999999999999998877655555555556667789999999999999877 5999999999999999999943  


Q ss_pred             -chhHHHHHHHHHHHHHHHHHH
Q 021954          206 -GPRRYLGVYFSSAIASSAMSY  226 (305)
Q Consensus       206 -G~~~fl~lyl~sgi~g~l~s~  226 (305)
                       .+.+|+.+++.+++.-.+.++
T Consensus        91 ~rtadf~~mllf~~~l~~~~~~  112 (239)
T KOG0858|consen   91 GRTADFLYMLLFGAVLLTLTGL  112 (239)
T ss_pred             CchhHHHHHHHHHHHHHHHHHH
Confidence             347899888888888776554

>COG5291 Predicted membrane protein [Function unknown]

Probab=96.88  E-value=0.0025  Score=58.74  Aligned_cols=89  Identities=15%  Similarity=0.114  Sum_probs=58.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhchHHHHHhhhccccccccCCcchhhhhccccCCH-HHHHHHHHHHHHHHHHHHH-hcch
Q 021954          130 GRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI-AHLMVNCYSLNSIGPTMEK-ICGP  207 (305)
Q Consensus       130 ~~pvT~~LI~i~vlvfll~~~~~~~l~~~g~~~~~~i~~gq~wRL~Ts~FlH~~~-~HLl~Nm~~L~~~G~~lE~-~~G~  207 (305)
                      .||+|+.+..+..++.++........-..-...+-.+.+-|+||++|+..+-++. +-.++|.+.++-..+.+|+ .+++
T Consensus        19 IPPITRy~~ll~~a~til~~~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~   98 (313)
T COG5291          19 IPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNT   98 (313)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCc
Confidence            5788888777666666655443211100001123345678999999988877764 8999999999999999999 4555


Q ss_pred             h--HHHHHHHHHH
Q 021954          208 R--RYLGVYFSSA  218 (305)
Q Consensus       208 ~--~fl~lyl~sg  218 (305)
                      .  +|....+.+.
T Consensus        99 ~lv~Y~~yl~~~~  111 (313)
T COG5291          99 SLVEYFWYLLVIS  111 (313)
T ss_pred             cHHHHHHHHHHHH
Confidence            4  6654444333

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=96.84  E-value=0.0043  Score=58.77  Aligned_cols=86  Identities=20%  Similarity=0.284  Sum_probs=71.2

Q ss_pred             CCcchhhhhccccCCHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH--------hcC-----Cceec
Q 021954          169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR--------FCN-----SPAVG  235 (305)
Q Consensus       169 gq~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l--------~~~-----~~~vG  235 (305)
                      ...|+++|+.|+-.+++-.++|.+.+.+.|..+|+.+|...++..|.+.-...++....        +.+     .+..|
T Consensus        65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G  144 (326)
T KOG2890|consen   65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG  144 (326)
T ss_pred             hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence            48999999999999999999999999999999999999999998887665444433221        122     35789


Q ss_pred             hHHHHHHHHHHHHHHHHhh
Q 021954          236 ASGAIFGLVGSFAVFIMRH  254 (305)
Q Consensus       236 aSGaVfGLlga~~~l~~~~  254 (305)
                      ..|...|++.++=-..|+.
T Consensus       145 ~~gilaGilVa~kQllpd~  163 (326)
T KOG2890|consen  145 TTGILAGILVAWKQLLPDT  163 (326)
T ss_pred             chHHHHHHHHHHHHHcCce
Confidence            9999999999988887776

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.82  E-value=0.035  Score=51.82  Aligned_cols=95  Identities=20%  Similarity=0.290  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhchHHHHHhhhccccccc-cCCcchhhhhccccCCHHHHHHHHHHHHHHHHHHHHhcchhH
Q 021954          131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRR  209 (305)
Q Consensus       131 ~pvT~~LI~i~vlvfll~~~~~~~l~~~g~~~~~~i~-~gq~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~~~  209 (305)
                      .|+|..+++-..++-+..-+.. .--.++.++.+.++ ..|+||++-+-|.-.|---+++-.+.+|.+ +-+||.+|+-|
T Consensus        11 mpVTK~~~iT~~~~~vvagI~~-~k~~f~l~y~~~l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShk   88 (323)
T KOG4463|consen   11 MPVTKAFVITSALFTVVAGIQG-RKSKFGLSYQDILEKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHK   88 (323)
T ss_pred             cchHHHHHHHHHHHHHHHHhhh-cccccccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhcccc
Confidence            4667665544443333222211 11123444444443 479999999999999988888877777766 68999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 021954          210 YLGVYFSSAIASSAMSYR  227 (305)
Q Consensus       210 fl~lyl~sgi~g~l~s~l  227 (305)
                      |..+.+.+++.+-+....
T Consensus        89 y~~fiv~s~~~~~l~~~i  106 (323)
T KOG4463|consen   89 YSVFIVFSGTVSLLLEVI  106 (323)
T ss_pred             ceeehhHHHHHHHHHHHH
Confidence            999999998888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	305
2xov_A	181	Crystal Structure Of E.Coli Rhomboid Protease Glpg,		5e-06
2irv_A	182	Crystal Structure Of Glpg, A Rhomboid Intramembrane		5e-06
3b45_A	180	Crystal Structure Of Glpg At 1.9a Resolution Length		5e-06
2ic8_A	182	Crystal Structure Of Glpg Length = 182		5e-06
2xow_A	179	Structure Of Glpg In Complex With A Mechanism-Based		5e-06
2o7l_A	180	The Open-Cap Conformation Of Glpg Length = 180		6e-06
2xtu_A	181	Structure Of E.Coli Rhomboid Protease Glpg Active S		9e-06
2xtv_A	180	Structure Of E.Coli Rhomboid Protease Glpg, Active		1e-05
3b44_A	180	Crystal Structure Of Glpg W136a Mutant Length = 180		3e-04

>pdb|2XOV|A Chain A, Crystal Structure Of E.Coli Rhomboid Protease Glpg, Native Enzyme Length = 181

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119

>pdb|2IRV|A Chain A, Crystal Structure Of Glpg, A Rhomboid Intramembrane Serine Protease Length = 182

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 6   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 65
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G
Sbjct: 66  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 118

>pdb|3B45|A Chain A, Crystal Structure Of Glpg At 1.9a Resolution Length = 180

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119

>pdb|2IC8|A Chain A, Crystal Structure Of Glpg Length = 182

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119

>pdb|2XOW|A Chain A, Structure Of Glpg In Complex With A Mechanism-Based Isocoumarin Inhibitor Length = 179

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 6   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 65
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G
Sbjct: 66  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 118

>pdb|2O7L|A Chain A, The Open-Cap Conformation Of Glpg Length = 180

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 5   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 64
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G
Sbjct: 65  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 117

>pdb|2XTU|A Chain A, Structure Of E.Coli Rhomboid Protease Glpg Active Site Mutant, S201t In Trigonal Crystal Form Length = 181

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G +G ++ L+G
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLTGVVYALMG 119

>pdb|2XTV|A Chain A, Structure Of E.Coli Rhomboid Protease Glpg, Active Site Mutant, S201t, Orthorhombic Crystal Form Length = 180

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 5   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 64
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G +G ++ L+G
Sbjct: 65  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLTGVVYALMG 117

>pdb|3B44|A Chain A, Crystal Structure Of Glpg W136a Mutant Length = 180

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +F R  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFARYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	6e-44
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	3e-43

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score =  147 bits (373), Expect = 6e-44
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 1/158 (0%)

Query: 134 TNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA     D +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G   +   
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGE 126

Query: 253 RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
           R        +  L   A + I      L    + N  H
Sbjct: 127 RDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAH 164

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score =  146 bits (370), Expect = 3e-43
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 1/158 (0%)

Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMVNCY 192
           T IL A+ VL+YIAQ    +  +++     +  +   + WR  +   +H +  H++ N  
Sbjct: 12  TLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLS 71

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
                G  +E+  G  + L +Y  ++  +  +          G SG ++ ++G   +   
Sbjct: 72  WFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDK 131

Query: 253 RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
            + ++    +     L   I       L    + N  H
Sbjct: 132 LNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAH 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.96
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.96

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.96  E-value=1.4e-28  Score=215.09  Aligned_cols=169  Identities=21%  Similarity=0.196  Sum_probs=129.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhchH-HHHHhhhccccccccCCcchhhhhccccCCHHHHHHHHHHHHHHHHHHHHhcch
Q 021954          129 IGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP  207 (305)
Q Consensus       129 ~~~pvT~~LI~i~vlvfll~~~~~~-~l~~~g~~~~~~i~~gq~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~  207 (305)
                      +.+|+|..++++|+++|+++...+. ...++....+..+.++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|+
T Consensus         2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~   81 (181)
T 2xov_A            2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS   81 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            4578999999999999999887544 334444444545678999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCceechHHHHHHHHHHHHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHhc---cCC
Q 021954          208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL---IKG  284 (305)
Q Consensus       208 ~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGLlga~~~l~~~~~~~~~~~~~~l~~i~~~l~l~lv~gll---~~~  284 (305)
                      +|++.+|+.+++.+++.++++.+..++|+||+++|++++..+...++++.....+.+   ....+.+.+++++.   .++
T Consensus        82 ~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~  158 (181)
T 2xov_A           82 GKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRG---LIIFALIWIVAGWFDLFGMS  158 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHH---HHHHHHHHHHHHHTTSSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHhhCcCceeeeHHH---HHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999988776799999999999998776433333221111111   22222333444443   368


Q ss_pred             hhhHhcchhhHHHHHh
Q 021954          285 IDNWGHDMPGRRVPLQ  300 (305)
Q Consensus       285 i~~~aHLGGa~~~~~~  300 (305)
                      +|++||+||++.|...
T Consensus       159 v~~~aHlgG~l~G~l~  174 (181)
T 2xov_A          159 MANGAHIAGLAVGLAM  174 (181)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHH
Confidence            9999999996655543

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.96  E-value=3e-29  Score=221.97  Aligned_cols=169  Identities=17%  Similarity=0.220  Sum_probs=129.2

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHhchH-HHHHhhhccccccccCCcchhhhhccccCCHHHHHHHHHHHHHHHHHHHHhcc
Q 021954          128 FIGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICG  206 (305)
Q Consensus       128 ~~~~pvT~~LI~i~vlvfll~~~~~~-~l~~~g~~~~~~i~~gq~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G  206 (305)
                      .+++|+|..++++|+++|+++...++ ...++....++.+.++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|
T Consensus         6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G   85 (196)
T 2nr9_A            6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFG   85 (196)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            34578999999999999999987643 33444444454567899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCceechHHHHHHHHHHHHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHhc----c
Q 021954          207 PRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL----I  282 (305)
Q Consensus       207 ~~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGLlga~~~l~~~~~~~~~~~~~~l~~i~~~l~l~lv~gll----~  282 (305)
                      +++++.+|+.+++.+++.++++.+..++||||++||++++.++....++..+.. +....   .++.+.+++++.    .
T Consensus        86 ~~~~l~~yl~~~~~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~  161 (196)
T 2nr9_A           86 SVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDL-PEGFF---TMLLVGIALGFISPLFG  161 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSCCC-CCSST---TTTTTTTTHHHHSCSSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCeeeHHHHHHHHHHHHHHHHHhcchhhcc-hHHHH---HHHHHHHHHHHHHhccC
Confidence            999999999999999999999877679999999999999876654333332111 11111   111112223333    3


Q ss_pred             CChhhHhcchhhHHHHHh
Q 021954          283 KGIDNWGHDMPGRRVPLQ  300 (305)
Q Consensus       283 ~~i~~~aHLGGa~~~~~~  300 (305)
                      +++|++||+||++.|...
T Consensus       162 ~~v~~~aHlgG~l~G~l~  179 (196)
T 2nr9_A          162 VEMGNAAHISGLIVGLIW  179 (196)
T ss_dssp             CTTCHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHH
Confidence            489999999996666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	305
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	2e-24
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	2e-21

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 94.8 bits (235), Expect = 2e-24
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 1/158 (0%)

Query: 134 TNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA     D +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G   +   
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGE 126

Query: 253 RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
           R        +  L   A + I      L    + N  H
Sbjct: 127 RDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAH 164

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 87.1 bits (215), Expect = 2e-21
 Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 1/158 (0%)

Query: 134 TNILLAVNVLVYIAQ-FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T IL A+ VL+YIAQ    +D ++             + WR  +   +H +  H++ N  
Sbjct: 9   TLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLS 68

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
                G  +E+  G  + L +Y  ++  +  +          G SG ++ ++G   +   
Sbjct: 69  WFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDK 128

Query: 253 RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGH 290
            + ++    +     L   I       L    + N  H
Sbjct: 129 LNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAH 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.96
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.95

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.9e-28  Score=210.90  Aligned_cols=171  Identities=22%  Similarity=0.186  Sum_probs=138.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhc-hHHHHHhhhccccccccCCcchhhhhccccCCHHHHHHHHHHHHHHHHHHHHhcch
Q 021954          129 IGRQWTNILLAVNVLVYIAQFAT-QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP  207 (305)
Q Consensus       129 ~~~pvT~~LI~i~vlvfll~~~~-~~~l~~~g~~~~~~i~~gq~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~  207 (305)
                      |..|+|..++++|+++|+++... .....++.....+...++||||++|++|+|.|+.|+++||+.++.+|+.+|+.+|+
T Consensus         2 r~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~   81 (180)
T d3b45a1           2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS   81 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence            55799999999999999987654 34556666656666789999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCceechHHHHHHHHHHHHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHhccCChhh
Q 021954          208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN  287 (305)
Q Consensus       208 ~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGLlga~~~l~~~~~~~~~~~~~~l~~i~~~l~l~lv~gll~~~i~~  287 (305)
                      ++++.+|+++++.|++++.++.+....|+||+++|++++..+..++++......+....................+++|+
T Consensus        82 ~~~~~~~~~~~~~g~l~~~~~~~~~~~G~sg~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (180)
T d3b45a1          82 GKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMAN  161 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCH
T ss_pred             hhheeeeeHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhhhcchhHHhhHHHHHHHHHHHHHHHHHHhccCchHH
Confidence            99999999999999999999998899999999999999999888877755444333222222222333333445689999


Q ss_pred             HhcchhhHHHHH
Q 021954          288 WGHDMPGRRVPL  299 (305)
Q Consensus       288 ~aHLGGa~~~~~  299 (305)
                      .||+||++.|..
T Consensus       162 ~aHlgG~l~G~~  173 (180)
T d3b45a1         162 GAHIAGLAVGLA  173 (180)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999555543

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.95  E-value=1.1e-28  Score=214.36  Aligned_cols=171  Identities=17%  Similarity=0.177  Sum_probs=137.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhchH-HHHHhhhccccccccCCcchhhhhccccCCHHHHHHHHHHHHHHHHHHHHhcch
Q 021954          129 IGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP  207 (305)
Q Consensus       129 ~~~pvT~~LI~i~vlvfll~~~~~~-~l~~~g~~~~~~i~~gq~wRL~Ts~FlH~~~~HLl~Nm~~L~~~G~~lE~~~G~  207 (305)
                      +..|+|..++++|+++|+++....+ ....+...++....++||||++|+.|+|.|+.|+++||+.++.+|..+|+.+|+
T Consensus         4 ~~~pvt~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~   83 (189)
T d2nr9a1           4 QQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGS   83 (189)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4468999999999999999887544 344444445566789999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCceechHHHHHHHHHHHHHHHHhhhhhccCchhHHHHHHHHHHHHHHHHhccCChhh
Q 021954          208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN  287 (305)
Q Consensus       208 ~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGLlga~~~l~~~~~~~~~~~~~~l~~i~~~l~l~lv~gll~~~i~~  287 (305)
                      .+++.+|+.+++++++.+.+..+++.+|+||+++|++++.+...+.++.....+......+...+.+.++.....+++|+
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~~~~vGaSG~v~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  163 (189)
T d2nr9a1          84 VKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGN  163 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCH
T ss_pred             HhhhhHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHhhhHhccHHHHHHHHHHHHHHHHHHhccCCChHH
Confidence            99999999999999999998888899999999999999988888877765444322222222233333333445679999


Q ss_pred             HhcchhhHHHHH
Q 021954          288 WGHDMPGRRVPL  299 (305)
Q Consensus       288 ~aHLGGa~~~~~  299 (305)
                      +||++|++.|..
T Consensus       164 ~aHl~G~l~G~~  175 (189)
T d2nr9a1         164 AAHISGLIVGLI  175 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999655544