Citrus Sinensis ID: 021975

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
Protein Sequence
MAIAAAAASSSSSLFPKYPCLSRNSPRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREDSAELQLFDRRRD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccEEEccccEEccccccccccccccccHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHHHHccccccHHHHHHHHHHccccccEEEEEEEcccccccccHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHcccEEcccccccHHHccccccccccHHcccccEcccccccccccccEEEEEEcccccccccccHHHHHHHccHHHHHHHHHcHHHHHHHccccccHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHccccccccEEEEEccHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEEEEEccccccccccccccccccccEEEccccc
Coil and Loop (DISEMBL)
MAIAAAAassssslfpkypclsrnsprlpqslrfsstiravtlqpaksernqtlelegdlfscpicyeplirkgptgltlgaiyrsgfkcrkcdktysskdnyldLTVIsglkdytevkpastelfrspfVSFLYergwrqnfnrsgfpgpdeEFKMAQEYFKSaqggllvdvscgsglfsrkfaksgtysgvvaldFSENMLRQCYDFIKQDNTILTSNLALVRAdvcrlpfasgfvDAVHAgaalhcwpspsnaVAEISRILrsggvfvgttflrytsstsltgrvlredsaelqlfdrrrd
Flexible Loop (DISEMBL)
MAIAAaaassssslfpkyPCLSRNSPRLPQSLRfsstiravtlqpaksernqtlelegdlFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKcdktysskdnyldLTVISGLKDYTevkpastelfrsPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRytsstsltgrvlredsaelqlfdrrrd
Low Complexity Region (SEG)
MAIaaaaasssssLFPKYPCLSRNSPRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREDSAELQLFDRRRD
Disordered region (IsUnstruct)
*****************************************************LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGF******FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV****************
Disordered Region (DISOPRED)
***********************************************************LFSCPICYEPLI*****************KCRKCDKTYSSKDNYLDLTVI************STELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREDSAELQLFD****
Disordered Region (DISEMBL)
*************LFPKYPCLSRNSPRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREDSAELQLFDRRRD
Disordered Region (DISPRO)
**************FPKYPCLSRNSPRLPQSLRFSSTIRAVTL**********LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE*SAE*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIAAAAASSSSSLFPKYPCLSRNSPRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREDSAELQLFDRRRD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	304	2.2.26 [Sep-21-2011]
Q0WPT7	352	Uncharacterized methyltra	yes	no	0.838	0.724	0.706	1e-106
Q8LBV4	355	Uncharacterized methyltra	no	no	0.723	0.619	0.590	6e-72
B9DNV5	241	Demethylmenaquinone methy	yes	no	0.398	0.502	0.302	3e-09
O66128	246	Demethylmenaquinone methy	yes	no	0.398	0.491	0.288	4e-09
Q4L6H3	239	Demethylmenaquinone methy	yes	no	0.328	0.418	0.339	1e-08
Q24W96	253	Demethylmenaquinone methy	yes	no	0.411	0.494	0.279	1e-08
Q6GGU0	241	Demethylmenaquinone methy	yes	no	0.332	0.419	0.336	2e-08
Q2YY85	241	Demethylmenaquinone methy	yes	no	0.332	0.419	0.336	2e-08
P67063	241	Demethylmenaquinone methy	yes	no	0.332	0.419	0.336	3e-08
A8Z450	241	Demethylmenaquinone methy	yes	no	0.332	0.419	0.336	3e-08

>sp|Q0WPT7|Y2104_ARATH Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1

 Score =  384 bits (987), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/259 (70%), Positives = 213/259 (82%), Gaps = 4/259 (1%)

Query: 33  RFSSTIRAVTLQPAKSERNQTLELEGD---LFSCPICYEPLIRKGPTGLTLGAIYRSGFK 89
           RF S   +     +   +N+T ++E +   +F+CP+CYEPL+RKGP+G+ L AIYRSGFK
Sbjct: 48  RFPSAAISAVAPKSDINKNETPKIEIEETQVFACPVCYEPLMRKGPSGINLQAIYRSGFK 107

Query: 90  CRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFP 149
           C +C+KTYSSKD YLDLTV + L DY EVKP +TELFRSP VSFLYERGWRQ F RSGFP
Sbjct: 108 CGQCNKTYSSKDEYLDLTVTADLDDYNEVKPITTELFRSPLVSFLYERGWRQAFKRSGFP 167

Query: 150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
           GPDEEF+MA+EYFK A+GGLLVDVSCGSGLFSRKFA+SG YSGV+ALD+SENMLRQC +F
Sbjct: 168 GPDEEFRMAEEYFKEAEGGLLVDVSCGSGLFSRKFAQSGKYSGVIALDYSENMLRQCKEF 227

Query: 210 IKQDNTILTS-NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
           IK DNT   S N+A+VRADV RLPF SG VDAVHAGAALHCWPSP+NA+AEI R+LRSGG
Sbjct: 228 IKNDNTFDNSTNIAVVRADVSRLPFPSGSVDAVHAGAALHCWPSPTNAIAEICRVLRSGG 287

Query: 269 VFVGTTFLRYTSSTSLTGR 287
           VFVGTTFLRY+ ST    R
Sbjct: 288 VFVGTTFLRYSPSTPWIIR 306

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q8LBV4|Y1814_ARATH Uncharacterized methyltransferase At1g78140, chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=1 SV=1

 Score =  271 bits (692), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 131/222 (59%), Positives = 159/222 (71%), Gaps = 2/222 (0%)

Query: 57  EGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDY 115
           E  + +CPICY  L     P GL   A      +C  C ++YS  + +LDL V SG K Y
Sbjct: 72  EKKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRY 131

Query: 116 TEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSC 175
           +E  P STELFR+P VSFLYERGWRQNF   GFPGP++EF+MA+ Y K   GG ++D SC
Sbjct: 132 SEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASC 191

Query: 176 GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI-KQDNTILTSNLALVRADVCRLPFA 234
           GSG+FSR F +S  +S V+ALD+SENMLRQCY+ + K++N      L LVRAD+ RLPF 
Sbjct: 192 GSGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLVRADIARLPFL 251

Query: 235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276
           SG VDAVHAGAALHCWPSPS+AVAEISR+LR GGVFV TTF+
Sbjct: 252 SGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFI 293

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B9DNV5|UBIE_STACT Demethylmenaquinone methyltransferase OS=Staphylococcus carnosus (strain TM300) GN=ubiE PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 21/142 (14%)

Query: 131 VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY 190
           +SF   + WR+   +S                +  +G   +DV CG+  ++   +K+   
Sbjct: 29  ISFEQHKVWRKRVMKS---------------MQVKKGSKALDVCCGTADWTIALSKAVGP 73

Query: 191 SG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHC 249
           SG V+ LDFSENML+     + ++ T   SN+ LV+ D   LPF     D V  G  L  
Sbjct: 74  SGEVIGLDFSENMLK-----VGEEKTKNMSNIQLVQGDAMDLPFDDNEFDYVTIGFGLRN 128

Query: 250 WPSPSNAVAEISRILRSGGVFV 271
            P    A+ E++R+L+ GG+ V
Sbjct: 129 IPDYVIALKEMNRVLKPGGMAV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus carnosus (strain TM300) (taxid: 396513)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|O66128|UBIE_MICLU Demethylmenaquinone methyltransferase OS=Micrococcus luteus GN=ubiE PE=3 SV=1

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 21/142 (14%)

Query: 131 VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GT 189
           +SF   + WR+             + M Q   K  +G   +DV CG+G ++ + A++ G 
Sbjct: 38  ISFNQHKSWRK-------------YTMKQMNVK--KGSKALDVCCGTGDWTIQMAQAVGK 82

Query: 190 YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHC 249
              V+ LDFSENML      + Q  T    N+ L+  +   LPF     D    G  L  
Sbjct: 83  NGHVIGLDFSENMLS-----VAQGKTNHIQNIELIHGNAMELPFEDNIFDYTTIGFGLRN 137

Query: 250 WPSPSNAVAEISRILRSGGVFV 271
            P     + E+ R+L+ GG+ V
Sbjct: 138 LPDYKKGLEEMYRVLKPGGMIV 159

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Micrococcus luteus (taxid: 1270)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q4L6H3|UBIE_STAHJ Demethylmenaquinone methyltransferase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ubiE PE=3 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 6/106 (5%)

Query: 167 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G   +DV CG+  ++   +K+ G +  V  LDFSENML      + ++ T   +N+ LV 
Sbjct: 50  GSKALDVCCGTADWTIALSKAVGAHGEVTGLDFSENMLE-----VGKEKTKHMNNIHLVH 104

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
            D   LPF     D V  G  L   P    A+ E++R+L+ GG+ V
Sbjct: 105 GDAMNLPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMIV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus haemolyticus (strain JCSC1435) (taxid: 279808)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q24W96|UBIE_DESHY Demethylmenaquinone methyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=ubiE PE=3 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 18/143 (12%)

Query: 130 FVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-G 188
            +SF  ++GWR               K A +  ++  G  +VD+ CG+   S + A + G
Sbjct: 43  LMSFGLDKGWR---------------KKAVQTVEAKPGMTMVDICCGTAQLSLELAMTVG 87

Query: 189 TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248
               +  LDFSENML++  + +    +   S + L + D   LPFA    D    G  L 
Sbjct: 88  EQGQITGLDFSENMLKKAQENLA--GSPYRSIIELRQGDAMNLPFADNSFDGATVGWGLR 145

Query: 249 CWPSPSNAVAEISRILRSGGVFV 271
             P     V E+ R+++ GG+ V
Sbjct: 146 NLPDLEKGVQEMIRVVKPGGMVV 168

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Desulfitobacterium hafniense (strain Y51) (taxid: 138119)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q6GGU0|UBIE_STAAR Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=ubiE PE=3 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
           +G   +DV CG+G ++   +K+ G+   V  +DFSENML      + ++ T    N+ LV
Sbjct: 49  KGMKALDVCCGTGDWTIALSKAVGSTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             D   LPF     D V  G  L   P    A+ E++R+L+ GG+ V
Sbjct: 104 HGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain MRSA252) (taxid: 282458)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q2YY85|UBIE_STAAB Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ubiE PE=3 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
           +G   +DV CG+G ++   +K+ G    V  +DFSENML      + ++ T    N+ LV
Sbjct: 49  KGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             D   LPF     D V  G  L   P    A+ E++R+L+ GG+ V
Sbjct: 104 HGDAMELPFGDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|P67063|UBIE_STAAW Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MW2) GN=ubiE PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
           +G   +DV CG+G ++   +K+ G    V  +DFSENML      + ++ T    N+ LV
Sbjct: 49  KGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             D   LPF     D V  G  L   P    A+ E++R+L+ GG+ V
Sbjct: 104 HGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|A8Z450|UBIE_STAAT Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=ubiE PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
           +G   +DV CG+G ++   +K+ G    V  +DFSENML      + ++ T    N+ LV
Sbjct: 49  KGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             D   LPF     D V  G  L   P    A+ E++R+L+ GG+ V
Sbjct: 104 HGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain USA300 / TCH1516) (taxid: 451516)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
217072446	342	unknown [Medicago truncatula]	0.921	0.818	0.724	1e-115
363814481	341	uncharacterized protein LOC100798970 [Gl	0.924	0.824	0.715	1e-114
388516609	342	unknown [Medicago truncatula]	0.921	0.818	0.721	1e-114
225463049	343	PREDICTED: uncharacterized methyltransfe	0.940	0.833	0.717	1e-114
224142467	332	predicted protein [Populus trichocarpa]	0.921	0.843	0.691	1e-113
356556565	341	PREDICTED: uncharacterized methyltransfe	0.911	0.812	0.715	1e-113
224120260	308	predicted protein [Populus trichocarpa]	0.812	0.801	0.791	1e-113
225463051	340	PREDICTED: uncharacterized methyltransfe	0.944	0.844	0.708	1e-113
255581285	290	phosphatidylethanolamine n-methyltransfe	0.792	0.831	0.796	1e-113
296084557	338	unnamed protein product [Vitis vinifera]	0.934	0.840	0.712	1e-112

>gi|217072446|gb|ACJ84583.1| unknown [Medicago truncatula]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/287 (72%), Positives = 234/287 (81%), Gaps = 7/287 (2%)

Query: 15  FPKYPCL---SRNSPRL--PQSLRFS--STIRAVTLQPAKSERNQTLELEGDLFSCPICY 67
           FPK P L   S   PRL   Q+ RF+  +T   V   P      +    + DLF+CPICY
Sbjct: 17  FPKCPHLFTKSHFHPRLLRSQTQRFNIRATSAVVVDSPLDLSTKKDQGTQVDLFACPICY 76

Query: 68  EPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFR 127
           EPLIRKGP GL L AIYRSGFKC++C K+Y+SKD YLDLTV SGL+DY EV+P  TELFR
Sbjct: 77  EPLIRKGPIGLNLPAIYRSGFKCKRCQKSYTSKDGYLDLTVTSGLRDYVEVQPNRTELFR 136

Query: 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS 187
           SP VSFLYERGWRQNF +SGFPGPDEEF+MAQEYF+ A+GG +VDVSCGSGLFSRKFAKS
Sbjct: 137 SPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGRIVDVSCGSGLFSRKFAKS 196

Query: 188 GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247
           GTYSGV+ALDFSENMLRQCYDFIK+D+T+ T+NLALVRADV RLPF SG VDAVHAGAAL
Sbjct: 197 GTYSGVIALDFSENMLRQCYDFIKKDDTLSTTNLALVRADVSRLPFESGSVDAVHAGAAL 256

Query: 248 HCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREDSA 294
           HCWPSPSNAVAEI+R+LRSGGVFVGTTFLRYTSSTS   R+ RE S+
Sbjct: 257 HCWPSPSNAVAEITRVLRSGGVFVGTTFLRYTSSTSWVARLFRERSS 303

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814481|ref|NP_001242875.1| uncharacterized protein LOC100798970 [Glycine max] gi|255636913|gb|ACU18789.1| unknown [Glycine max]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/285 (71%), Positives = 238/285 (83%), Gaps = 4/285 (1%)

Query: 15  FPKYPCLSRNSPRLPQSLRFSS--TIRAVTLQPAKSE--RNQTLELEGDLFSCPICYEPL 70
           F K P LS  S   P+ LR  S  TIRA++   A+SE    Q   +E D+F+CP+CYEPL
Sbjct: 19  FSKCPRLSSKSHFRPRLLRSISQRTIRAISAVAAESELGTQQDHAIEADIFACPVCYEPL 78

Query: 71  IRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPF 130
           IRKGP+GL L AIYRSGF C++C KTYSSKD YLDLTV +GL+DYTE++PA TELFRSP 
Sbjct: 79  IRKGPSGLNLPAIYRSGFMCKRCKKTYSSKDRYLDLTVTAGLRDYTEIQPARTELFRSPL 138

Query: 131 VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY 190
           VSFL+ERGWRQNF +SGFPGPDEEFKMAQEYF+SA+GGLLVDVSCGSGLFSRKFAKSGTY
Sbjct: 139 VSFLHERGWRQNFRQSGFPGPDEEFKMAQEYFESAEGGLLVDVSCGSGLFSRKFAKSGTY 198

Query: 191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW 250
           SGV+ALDFSENMLRQCYDFI++D+ + T+N+ALVRADV RLPF+SG VDAVHAGAALHCW
Sbjct: 199 SGVIALDFSENMLRQCYDFIEKDDALSTNNIALVRADVSRLPFSSGSVDAVHAGAALHCW 258

Query: 251 PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREDSAE 295
           PSPSNAVAEI+R L++GGVFVG+TFLRY+S T    R  RE + +
Sbjct: 259 PSPSNAVAEITRTLKNGGVFVGSTFLRYSSKTPWFLRPFRERTPQ 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516609|gb|AFK46366.1| unknown [Medicago truncatula]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/287 (72%), Positives = 233/287 (81%), Gaps = 7/287 (2%)

Query: 15  FPKYPCL---SRNSPRL--PQSLRFS--STIRAVTLQPAKSERNQTLELEGDLFSCPICY 67
           FPK P L   S   PRL   Q+ RF+  +T   V   P      +    + DLF+CPICY
Sbjct: 17  FPKCPHLFTKSHFHPRLLRSQTQRFNIRATSAVVVDSPLDLSTKKDQGTQVDLFACPICY 76

Query: 68  EPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFR 127
           EPLIRKGP GL L AIYRSGFKC++C K+Y+SKD YLDLTV SGL+DY EV+P  TELFR
Sbjct: 77  EPLIRKGPIGLNLPAIYRSGFKCKRCQKSYTSKDGYLDLTVTSGLRDYVEVQPNRTELFR 136

Query: 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS 187
           SP VSFLYERGWRQNF +SGFPGPDEEF+MAQEYF+ A+GG +VDVSCGSGLFSRKFAKS
Sbjct: 137 SPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGRIVDVSCGSGLFSRKFAKS 196

Query: 188 GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247
           GTYSGV+ALDFSENMLRQCYDFIK+D+T+ T+NLALVRADV RLPF SG VDAVHAGAAL
Sbjct: 197 GTYSGVIALDFSENMLRQCYDFIKKDDTLSTTNLALVRADVSRLPFESGSVDAVHAGAAL 256

Query: 248 HCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREDSA 294
           HCWPSPSNAVAEI+R+LRSGGVFVGTTF RYTSSTS   R+ RE S+
Sbjct: 257 HCWPSPSNAVAEITRVLRSGGVFVGTTFFRYTSSTSWVARLFRERSS 303

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463049|ref|XP_002268107.1| PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic [Vitis vinifera] gi|296084558|emb|CBI25579.3| unnamed protein product [Vitis vinifera]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/297 (71%), Positives = 240/297 (80%), Gaps = 11/297 (3%)

Query: 3   IAAAAASSSSSLFPKYPCLSRNS----PRLPQSLRFSSTIRA---VTLQPAKSER-NQTL 54
           +A A++S    +FP+YP LSR+S    P    SLRF S IRA   V L+P  S + N  L
Sbjct: 1   MATASSSLHQPIFPQYPSLSRSSRFHPPLRLSSLRFPSRIRASSAVALEPESSTQLNNGL 60

Query: 55  ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKD 114
           E   DLFSCP+CYEPLIRKGP GL L AIYRSGFKCR C+K+YSSKD YLDLT+ +G KD
Sbjct: 61  EF--DLFSCPVCYEPLIRKGPPGLNLPAIYRSGFKCRSCNKSYSSKDMYLDLTITAGSKD 118

Query: 115 YTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVS 174
           Y E++P  TELFRSP VSFLYERGWRQNFN+SGFPG DEEFKMAQEYF+   GGLLVDVS
Sbjct: 119 YNELQPNRTELFRSPLVSFLYERGWRQNFNQSGFPGRDEEFKMAQEYFEPVIGGLLVDVS 178

Query: 175 CGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-TSNLALVRADVCRLPF 233
           CGSGLFSRKFA+SGTYSGVVALDFSENMLRQCYDFIK++N  L T+NLALVRADV RLPF
Sbjct: 179 CGSGLFSRKFAESGTYSGVVALDFSENMLRQCYDFIKKENPALATTNLALVRADVSRLPF 238

Query: 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 290
           ++G VDAVHAGAALHCWPSPSNAVAEI+RILRSGG+FVGTTFLR +   S    +LR
Sbjct: 239 STGSVDAVHAGAALHCWPSPSNAVAEITRILRSGGIFVGTTFLRPSFGNSSITSILR 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142467|ref|XP_002324579.1| predicted protein [Populus trichocarpa] gi|222866013|gb|EEF03144.1| predicted protein [Populus trichocarpa]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/301 (69%), Positives = 237/301 (78%), Gaps = 21/301 (6%)

Query: 1   MAIAAAAASS--SSSLFPKYPCLSRNSPRLPQ-----SLRFSSTIRA---VTLQPAKSER 50
           MA+A+ A       S+  KYP LS  S   P      SLRF STIRA   V L+P ++  
Sbjct: 1   MAMASNALHHPLHQSISLKYPHLSHISRFSPSCLRFTSLRFPSTIRATSAVALEPNQA-- 58

Query: 51  NQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110
                    +F+CP+CYEPLIRKGP G  L AIYRS FKC+KC KTYSSKDNYLDLT+ +
Sbjct: 59  ---------IFACPVCYEPLIRKGPPGFNLPAIYRSSFKCKKCTKTYSSKDNYLDLTITA 109

Query: 111 GLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLL 170
           G+KDYTE+ P  TELFRSP VSFLYERGWRQ+FN+SGFPGPDEEF+MAQEYFK A+GGLL
Sbjct: 110 GMKDYTEINPVRTELFRSPLVSFLYERGWRQSFNQSGFPGPDEEFEMAQEYFKPARGGLL 169

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           VDVSCGSGLFSRKFAKSG YS V+ALDFSENMLRQCYD+IKQD+TI T+NL L+RADV R
Sbjct: 170 VDVSCGSGLFSRKFAKSGAYSKVIALDFSENMLRQCYDYIKQDDTISTTNLGLIRADVSR 229

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 290
           LPFASG VDAVHAGAA+HCWPSPSNAV+EI R+LRSGGVFVGTTFLRY+S+T    +  R
Sbjct: 230 LPFASGSVDAVHAGAAMHCWPSPSNAVSEICRVLRSGGVFVGTTFLRYSSTTPRIEQPFR 289

Query: 291 E 291
           E
Sbjct: 290 E 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556565|ref|XP_003546595.1| PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic-like [Glycine max]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/281 (71%), Positives = 234/281 (83%), Gaps = 4/281 (1%)

Query: 15  FPKYPCLSRNSPRLPQSLR--FSSTIRAVTLQPAKSE--RNQTLELEGDLFSCPICYEPL 70
           F + P LS  S   P+  R    S IRA++   A+SE    Q   +E D+F+CP+CYEPL
Sbjct: 19  FLRCPRLSSKSQFHPRRFRSQTQSIIRAISAVAAESELGTQQDQAIEADIFACPVCYEPL 78

Query: 71  IRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPF 130
           IRKGP+GL L AIYRSGF C++C K+YSSKD YLDLTV +GL+DYTE++PA TELFRSP 
Sbjct: 79  IRKGPSGLNLPAIYRSGFMCKRCKKSYSSKDRYLDLTVTAGLRDYTEIQPARTELFRSPL 138

Query: 131 VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY 190
           VSFLYERGWRQNF +SGFPGPDEEFKMAQEYF+SA+GGL+VDVSCGSGLFSRKFAKSG Y
Sbjct: 139 VSFLYERGWRQNFRQSGFPGPDEEFKMAQEYFESAKGGLIVDVSCGSGLFSRKFAKSGAY 198

Query: 191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW 250
           SGV+ALDFSENMLRQCY+FIK+D+T+ T+N+ALVRADV RLPF SG VDAVHAGAALHCW
Sbjct: 199 SGVIALDFSENMLRQCYEFIKKDDTLSTTNIALVRADVSRLPFPSGSVDAVHAGAALHCW 258

Query: 251 PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE 291
           PSPSNAVAEI+R+L+SGGVFVG+TFLRY+S T    R  RE
Sbjct: 259 PSPSNAVAEITRVLKSGGVFVGSTFLRYSSLTPWFLRPFRE 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120260|ref|XP_002331004.1| predicted protein [Populus trichocarpa] gi|222872934|gb|EEF10065.1| predicted protein [Populus trichocarpa]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/249 (79%), Positives = 218/249 (87%), Gaps = 2/249 (0%)

Query: 43  LQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102
            Q   ++++QTLE+  D F+CPICY+PLIRKGP G  L AIYRSGFKC +C+KTYSSK+N
Sbjct: 20  FQELSTQQSQTLEV--DPFACPICYQPLIRKGPKGFNLPAIYRSGFKCNRCNKTYSSKEN 77

Query: 103 YLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYF 162
           YLDLT+ +G+KDYTEVKP  TELFRSP VSFLYERGWRQNFN+SGFPGPDEEFKMAQEYF
Sbjct: 78  YLDLTITAGMKDYTEVKPVRTELFRSPLVSFLYERGWRQNFNQSGFPGPDEEFKMAQEYF 137

Query: 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA 222
           K  +GGLLVDVSCGSGLFSRKFAKSGTYS V+ALDFSENMLRQCYDFIKQD+TI T NLA
Sbjct: 138 KPTEGGLLVDVSCGSGLFSRKFAKSGTYSKVIALDFSENMLRQCYDFIKQDDTISTRNLA 197

Query: 223 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST 282
           LVRADV RLPFASG VDA+HAGAALHCWPS SNAVAEI R LRSGGVFVGTTFL+Y+S+T
Sbjct: 198 LVRADVSRLPFASGSVDAIHAGAALHCWPSASNAVAEICRALRSGGVFVGTTFLQYSSTT 257

Query: 283 SLTGRVLRE 291
           S   R  RE
Sbjct: 258 SWIERPFRE 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463051|ref|XP_002268200.1| PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic-like [Vitis vinifera]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/295 (70%), Positives = 233/295 (78%), Gaps = 8/295 (2%)

Query: 3   IAAAAASSSSSLFPKYPCLSRNSPRL--PQ--SLRFSSTIRA---VTLQPAKSERNQTLE 55
           +A AA+     LFPKYP L   S  +  PQ  SL F S  RA   V L+P  S +    +
Sbjct: 1   MAMAASFLHQPLFPKYPFLLHKSQFISRPQISSLPFPSRFRASSAVALEPESSPQLNN-D 59

Query: 56  LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDY 115
           ++ DLFSCP+CYEPLIRKGP GL L AIYRSGFKC+ C+K+YSSKD YLDLT+ +G K Y
Sbjct: 60  MDFDLFSCPVCYEPLIRKGPPGLNLPAIYRSGFKCKTCNKSYSSKDMYLDLTITAGSKAY 119

Query: 116 TEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSC 175
            E +P  TELFRSP VSFLYERGWRQNFN  GFPGPDEEFKMAQEYFK A GGLLVDVSC
Sbjct: 120 NEAQPVRTELFRSPLVSFLYERGWRQNFNLRGFPGPDEEFKMAQEYFKPAAGGLLVDVSC 179

Query: 176 GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235
           GSGLFSRKFA+SGTYSGVVALDFSENML QCYDFIK+DN  LT+NLALVRAD+ RLPF+S
Sbjct: 180 GSGLFSRKFAESGTYSGVVALDFSENMLHQCYDFIKKDNPSLTTNLALVRADISRLPFSS 239

Query: 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 290
           G VDAVHAGAALHCWPSPSNAVAEI+RILRSGG+FVGTTFLR   + S    +LR
Sbjct: 240 GSVDAVHAGAALHCWPSPSNAVAEITRILRSGGIFVGTTFLRPIYTNSSIPAILR 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581285|ref|XP_002531454.1| phosphatidylethanolamine n-methyltransferase, putative [Ricinus communis] gi|223528947|gb|EEF30941.1| phosphatidylethanolamine n-methyltransferase, putative [Ricinus communis]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/241 (79%), Positives = 211/241 (87%)

Query: 51  NQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110
            QT   E D+F+CP+CYEPLIRKGP G  L AIYRSGFKC+KC+KTYSSKDNYLDLT+ +
Sbjct: 6   QQTQTFEDDVFACPVCYEPLIRKGPPGFNLSAIYRSGFKCKKCNKTYSSKDNYLDLTITA 65

Query: 111 GLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLL 170
            +K+YTEVKPA TELFRSP VSFLYERGWRQNFN+SGFPGPDEEFKMAQEYFK A+GG+L
Sbjct: 66  SMKEYTEVKPARTELFRSPLVSFLYERGWRQNFNQSGFPGPDEEFKMAQEYFKPAEGGIL 125

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           VDVSCGSGLFSRKFA SGTYS VVALDFSENMLRQCYDFIKQD+ I   +LALVRADV R
Sbjct: 126 VDVSCGSGLFSRKFATSGTYSKVVALDFSENMLRQCYDFIKQDDNISEKDLALVRADVSR 185

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 290
           LPF+SG VDAVHAGAALHCWPSPSNA+AEI R LRSGGVFVGTTFLRY +++S   R  R
Sbjct: 186 LPFSSGSVDAVHAGAALHCWPSPSNAIAEICRTLRSGGVFVGTTFLRYNATSSWIERSFR 245

Query: 291 E 291
           E
Sbjct: 246 E 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084557|emb|CBI25578.3| unnamed protein product [Vitis vinifera]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/292 (71%), Positives = 231/292 (79%), Gaps = 8/292 (2%)

Query: 6   AAASSSSSLFPKYPCLSRNSPRL--PQ--SLRFSSTIRA---VTLQPAKSERNQTLELEG 58
           AA+     LFPKYP L   S  +  PQ  SL F S  RA   V L+P  S +    +++ 
Sbjct: 2   AASFLHQPLFPKYPFLLHKSQFISRPQISSLPFPSRFRASSAVALEPESSPQLNN-DMDF 60

Query: 59  DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEV 118
           DLFSCP+CYEPLIRKGP GL L AIYRSGFKC+ C+K+YSSKD YLDLT+ +G K Y E 
Sbjct: 61  DLFSCPVCYEPLIRKGPPGLNLPAIYRSGFKCKTCNKSYSSKDMYLDLTITAGSKAYNEA 120

Query: 119 KPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSG 178
           +P  TELFRSP VSFLYERGWRQNFN  GFPGPDEEFKMAQEYFK A GGLLVDVSCGSG
Sbjct: 121 QPVRTELFRSPLVSFLYERGWRQNFNLRGFPGPDEEFKMAQEYFKPAAGGLLVDVSCGSG 180

Query: 179 LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238
           LFSRKFA+SGTYSGVVALDFSENML QCYDFIK+DN  LT+NLALVRAD+ RLPF+SG V
Sbjct: 181 LFSRKFAESGTYSGVVALDFSENMLHQCYDFIKKDNPSLTTNLALVRADISRLPFSSGSV 240

Query: 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 290
           DAVHAGAALHCWPSPSNAVAEI+RILRSGG+FVGTTFLR   + S    +LR
Sbjct: 241 DAVHAGAALHCWPSPSNAVAEITRILRSGGIFVGTTFLRPIYTNSSIPAILR 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
TAIR|locus:2063218	352	AT2G41040 [Arabidopsis thalian	0.822	0.710	0.720	2.5e-97
TAIR|locus:2194759	355	AT1G78140 [Arabidopsis thalian	0.746	0.639	0.573	5.1e-67
UNIPROTKB|G5EGY9	380	MGCH7_ch7g116 "Sterol 24-C-met	0.434	0.347	0.321	9.9e-08
UNIPROTKB|Q5LVS6	208	SPO0620 "Uncharacterized prote	0.358	0.524	0.316	5.4e-07
TIGR_CMR|SPO_0620	208	SPO_0620 "conserved hypothetic	0.358	0.524	0.316	5.4e-07
POMBASE|SPBC16E9.05	378	erg6 "sterol 24-C-methyltransf	0.434	0.349	0.301	1.1e-06
UNIPROTKB|Q3AB55	244	menG "Demethylmenaquinone meth	0.328	0.409	0.330	1.3e-06
TIGR_CMR|CHY_1809	244	CHY_1809 "2-heptaprenyl-1,4-na	0.328	0.409	0.330	1.3e-06
SGD|S000004467	383	ERG6 "Delta(24)-sterol C-methy	0.493	0.391	0.281	4.1e-06
TIGR_CMR|BA_2890	258	BA_2890 "methyltransferase, Ub	0.378	0.445	0.278	4.7e-06

TAIR|locus:2063218 AT2G41040 [Arabidopsis thaliana (taxid:3702)]

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 183/254 (72%), Positives = 212/254 (83%)

Query:    33 RFSSTIRAVTLQPAKSERNQT--LELEG-DLFSCPICYEPLIRKGPTGLTLGAIYRSGFK 89
             RF S   +     +   +N+T  +E+E   +F+CP+CYEPL+RKGP+G+ L AIYRSGFK
Sbjct:    48 RFPSAAISAVAPKSDINKNETPKIEIEETQVFACPVCYEPLMRKGPSGINLQAIYRSGFK 107

Query:    90 CRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFP 149
             C +C+KTYSSKD YLDLTV + L DY EVKP +TELFRSP VSFLYERGWRQ F RSGFP
Sbjct:   108 CGQCNKTYSSKDEYLDLTVTADLDDYNEVKPITTELFRSPLVSFLYERGWRQAFKRSGFP 167

Query:   150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
             GPDEEF+MA+EYFK A+GGLLVDVSCGSGLFSRKFA+SG YSGV+ALD+SENMLRQC +F
Sbjct:   168 GPDEEFRMAEEYFKEAEGGLLVDVSCGSGLFSRKFAQSGKYSGVIALDYSENMLRQCKEF 227

Query:   210 IKQDNTILTS-NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
             IK DNT   S N+A+VRADV RLPF SG VDAVHAGAALHCWPSP+NA+AEI R+LRSGG
Sbjct:   228 IKNDNTFDNSTNIAVVRADVSRLPFPSGSVDAVHAGAALHCWPSPTNAIAEICRVLRSGG 287

Query:   269 VFVGTTFLRYTSST 282
             VFVGTTFLRY+ ST
Sbjct:   288 VFVGTTFLRYSPST 301

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2194759 AT1G78140 [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 133/232 (57%), Positives = 164/232 (70%)

Query:    47 KSERNQTLELEGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLD 105
             K ++N+    E  + +CPICY  L     P GL   A      +C  C ++YS  + +LD
Sbjct:    65 KKDKNRG---EKKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLD 121

Query:   106 LTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSA 165
             L V SG K Y+E  P STELFR+P VSFLYERGWRQNF   GFPGP++EF+MA+ Y K  
Sbjct:   122 LAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPV 181

Query:   166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI-KQDNTILTSNLALV 224
              GG ++D SCGSG+FSR F +S  +S V+ALD+SENMLRQCY+ + K++N      L LV
Sbjct:   182 LGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLV 241

Query:   225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276
             RAD+ RLPF SG VDAVHAGAALHCWPSPS+AVAEISR+LR GGVFV TTF+
Sbjct:   242 RADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFI 293

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

UNIPROTKB|G5EGY9 MGCH7_ch7g116 "Sterol 24-C-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 147 (56.8 bits), Expect = 9.9e-08, P = 9.9e-08
 Identities = 47/146 (32%), Positives = 74/146 (50%)

Query:   134 LYERGWRQNFNRSGFPGPDEEFKMA---QEYFKSAQGGL-----LVDVSCGSGLFSRKFA 185
             +YE GW Q+F+   F   +E F  A    E++ + Q G+     ++DV CG G  +R+ A
Sbjct:    90 IYEYGWGQSFHFCRF-SHNESFYQAIARHEHYLAHQIGIKEGMTVLDVGCGVGGPAREIA 148

Query:   186 KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-G 244
             K  T   VV L+ ++  + +   + KQ+   L S L  V+ D  ++ F     DAV+A  
Sbjct:   149 KF-TGCNVVGLNNNDYQIDRATHYAKQEK--LDSQLQFVKGDFMQMSFPDESFDAVYAIE 205

Query:   245 AALHCWPSPSNAVAEISRILRSGGVF 270
             A +H  P      +EI R+L+ GG F
Sbjct:   206 ATVHA-PKLEGVYSEIFRVLKPGGTF 230

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5LVS6 SPO0620 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 133 (51.9 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 37/117 (31%), Positives = 58/117 (49%)

Query:   158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL 217
             A  +   A G  L+D+ CG G    +  +    SG V +DFSE ML++     +  + + 
Sbjct:    37 ALSFLDLADGDSLIDIGCGHGETLFQADRIVRLSGSVGVDFSEVMLKRAR--ARNRDAVW 94

Query:   218 TSNLALVRADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
              + +A   AD   LPF     G   +VH    ++ WP+P+  +AE  R+LR GG F+
Sbjct:    95 DTRMAFHCADTAALPFPDKRFGKALSVHT---IYFWPNPAAHLAEAFRVLRRGGRFL 148

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0620 SPO_0620 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 133 (51.9 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 37/117 (31%), Positives = 58/117 (49%)

Query:   158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL 217
             A  +   A G  L+D+ CG G    +  +    SG V +DFSE ML++     +  + + 
Sbjct:    37 ALSFLDLADGDSLIDIGCGHGETLFQADRIVRLSGSVGVDFSEVMLKRAR--ARNRDAVW 94

Query:   218 TSNLALVRADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
              + +A   AD   LPF     G   +VH    ++ WP+P+  +AE  R+LR GG F+
Sbjct:    95 DTRMAFHCADTAALPFPDKRFGKALSVHT---IYFWPNPAAHLAEAFRVLRRGGRFL 148

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPBC16E9.05 erg6 "sterol 24-C-methyltransferase Erg6" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 138 (53.6 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 44/146 (30%), Positives = 72/146 (49%)

Query:   134 LYERGWRQNFNRSGFPGPDEEFKMA---QEYFKSAQGGL-----LVDVSCGSGLFSRKFA 185
             LYE GW Q+F+ S F    E F  +    E++ + + G+     ++DV CG G  +R+  
Sbjct:    85 LYEYGWSQSFHFSRFY-KGEAFAQSIARHEHYLAYRMGIKPGSRVLDVGCGVGGPAREIT 143

Query:   186 KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-G 244
             +  T   +V L+ ++  + +C ++  + N  L      V+ D   +PF     D V+A  
Sbjct:   144 EF-TGCNLVGLNNNDYQISRCNNYAVKRN--LDKKQVFVKGDFMHMPFEDNTFDYVYAIE 200

Query:   245 AALHCWPSPSNAVAEISRILRSGGVF 270
             A +H  PS      EI R+L+ GGVF
Sbjct:   201 ATVHA-PSLEGVYGEIFRVLKPGGVF 225

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006696 "ergosterol biosynthetic process" evidence=ISO;IMP

GO:0071210 "protein insertion into membrane raft" evidence=IMP

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IMP

GO:0006623 "protein targeting to vacuole" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

UNIPROTKB|Q3AB55 menG "Demethylmenaquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 133 (51.9 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 34/103 (33%), Positives = 52/103 (50%)

Query:   167 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
             GG  +DV+CG+G+F+ + A+  G    VV LDF+ENML      I + +  +   + LV 
Sbjct:    52 GGRGLDVACGTGMFAIELARVVGPTGEVVGLDFNENMLEVARKNIARYS--MEKIIKLVH 109

Query:   226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
              +   LPF     D    G AL   P     + E+ R+++ GG
Sbjct:   110 GNALALPFPDNSFDVATIGFALRNVPDIEKTILEMKRVVKPGG 152

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1809 CHY_1809 "2-heptaprenyl-1,4-naphthoquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 133 (51.9 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 34/103 (33%), Positives = 52/103 (50%)

Query:   167 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
             GG  +DV+CG+G+F+ + A+  G    VV LDF+ENML      I + +  +   + LV 
Sbjct:    52 GGRGLDVACGTGMFAIELARVVGPTGEVVGLDFNENMLEVARKNIARYS--MEKIIKLVH 109

Query:   226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
              +   LPF     D    G AL   P     + E+ R+++ GG
Sbjct:   110 GNALALPFPDNSFDVATIGFALRNVPDIEKTILEMKRVVKPGG 152

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

SGD|S000004467 ERG6 "Delta(24)-sterol C-methyltransferase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 133 (51.9 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 47/167 (28%), Positives = 81/167 (48%)

Query:   112 LKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGF-PGPDEEFKMA--QEY--FKSA- 165
             L+DY E    +T  + +    F YE GW  +F+ S F  G      +A  + Y  +K+  
Sbjct:    63 LEDYNE----ATHSYYNVVTDF-YEYGWGSSFHFSRFYKGESFAASIARHEHYLAYKAGI 117

Query:   166 -QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
              +G L++DV CG G  +R+ A+  T   V+ L+ ++  + +   + K+ N  L+  +  V
Sbjct:   118 QRGDLVLDVGCGVGGPAREIARF-TGCNVIGLNNNDYQIAKAKYYAKKYN--LSDQMDFV 174

Query:   225 RADVCRLPFASGFVDAVHA-GAALHCWPSPSNAVAEISRILRSGGVF 270
             + D  ++ F     D V+A  A  H  P      +EI ++L+ GG F
Sbjct:   175 KGDFMKMDFEENTFDKVYAIEATCHA-PKLEGVYSEIYKVLKPGGTF 220

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=IEA;IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006696 "ergosterol biosynthetic process" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

TIGR_CMR|BA_2890 BA_2890 "methyltransferase, UbiE/COQ5 family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 129 (50.5 bits), Expect = 4.7e-06, P = 4.7e-06
 Identities = 34/122 (27%), Positives = 58/122 (47%)

Query:   150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
             GPD ++ + Q   +S     L+D++ G G  +   A    +  VVALD +E ML     F
Sbjct:    27 GPDLQYVVQQ--VESRHNNRLLDIATGGGHVANVLAP--LFKEVVALDLTEKMLENAKKF 82

Query:   210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGV 269
             I  +      N++ V  +   LPF+    D +    A H + +P+  + E++R L   G+
Sbjct:    83 IISNGH---ENVSFVAGNAESLPFSDSSFDTITCRIAAHHFTNPAQFIYEVNRTLEDNGL 139

Query:   270 FV 271
             F+
Sbjct:   140 FI 141

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009108 "coenzyme biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WPT7	Y2104_ARATH	2, ., 1, ., 1, ., -	0.7065	0.8388	0.7244	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	304
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	9e-22
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	3e-15
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	3e-14
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	6e-14
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	8e-13
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	7e-12
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	8e-12
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	8e-11
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	9e-09
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	3e-08
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	1e-07
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	2e-07
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	3e-07
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	1e-06
PRK05785	226	PRK05785, PRK05785, hypothetical protein; Provisio	1e-06
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	2e-06
PRK10258	251	PRK10258, PRK10258, biotin biosynthesis protein Bi	3e-06
PLN02233	261	PLN02233, PLN02233, ubiquinone biosynthesis methyl	1e-05
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	5e-04

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 86.9 bits (216), Expect = 9e-22
 Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 10/101 (9%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           +DV CG+GL +   A+ G    V  +D S  ML               +    V  D   
Sbjct: 1   LDVGCGTGLLAEALARRGGAR-VTGVDLSPEMLALARKR---------APRKFVVGDAED 50

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
           LPF     D V +   LH  P P  A+ EI+R+L+ GG  V
Sbjct: 51  LPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           D+ CG+G  +R   K    +  +A D S  ML Q         T L+ N+  +  D  +L
Sbjct: 40  DIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQA-------KTKLSENVQFICGDAEKL 92

Query: 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275
           P      D + +  AL      S A++E++R+L+ GG+   +TF
Sbjct: 93  PLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 70.7 bits (174), Expect = 3e-14
 Identities = 40/103 (38%), Positives = 53/103 (51%), Gaps = 5/103 (4%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G  ++DV CG G  +R+ A+     G VV +D SE ML       K+    L  N+  VR
Sbjct: 20  GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML----ALAKERAAGLGPNVEFVR 75

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
            D   LPF  G  DAV +   L     P+ A+AEI+R+LR GG
Sbjct: 76  GDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGG 118

Length = 241

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 69.4 bits (171), Expect = 6e-14
 Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 9/120 (7%)

Query: 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENML---RQCYDFIK 211
           +   ++     G  ++D++CG+G  +   AK+   +G VV LDFSE ML   R+     K
Sbjct: 41  RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGRE-----K 95

Query: 212 QDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             +  L+ N+  V+ D   LPF     DAV     L   P    A+ E+ R+L+ GG  V
Sbjct: 96  LRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLV 155

Length = 239

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 66.5 bits (163), Expect = 8e-13
 Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 3/111 (2%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  ++DV+CG+G  +   AKS     VV LD SE+ML       ++       N+  V  
Sbjct: 52  GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVA---REKLKKKGVQNVEFVVG 108

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277
           D   LPF     DAV     L        A+ E+ R+L+ GG  +   F +
Sbjct: 109 DAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159

Length = 238

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 60.5 bits (147), Expect = 7e-12
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           +D+ CG+G   R   ++        +D S   L    + +     +    + L   D   
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVF 270
           L   S   D V A   LH    P   +  + R+L+ GGV 
Sbjct: 61  LDPGS--FDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 63.0 bits (154), Expect = 8e-12
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 21/143 (14%)

Query: 130 FVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT 189
            +SF   R WR+   +       ++               ++DV+CG+G  + + AKS  
Sbjct: 18  LLSFGLHRLWRRRAVKLIGVFKGQK---------------VLDVACGTGDLAIELAKSAP 62

Query: 190 YSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248
             G V  +DFS  ML      + +  + L  N+  ++AD   LPF     DAV     L 
Sbjct: 63  DRGKVTGVDFSSEMLE-----VAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117

Query: 249 CWPSPSNAVAEISRILRSGGVFV 271
                  A+ E+ R+L+ GG  V
Sbjct: 118 NVTDIQKALREMYRVLKPGGRLV 140

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 57.7 bits (140), Expect = 8e-11
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENML---RQCYDFIKQDNTILTSNLA 222
            G  ++D+ CG+G  + + A+    + V  +D S  ML   R+               + 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGP------RIT 54

Query: 223 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
            V+ D           DAV  G            +  ++ +L+ GG  V
Sbjct: 55  FVQGDAPDALDLLEGFDAVFIGGGGGDLL---ELLDALASLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 52.0 bits (125), Expect = 9e-09
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++D+ CG+G  +   A       V  +D S   L       K    +L  N+ +++ D  
Sbjct: 2   VLDLGCGTGALALALASGPGAR-VTGVDISPVALELAR---KAAAALLADNVEVLKGDAE 57

Query: 230 RLPF-ASGFVDAVHAGAALHCWP-SPSNAVAEISRILRSGGVFVGTTFL 276
            LP  A    D + +   LH      +  + E  R+L+ GGV V T  L
Sbjct: 58  ELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLVL 106

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++D+ CG+G   R  A++G  S V  +D S+  L    + ++     +      V AD  
Sbjct: 1   ILDLGCGTGRVLRALARAG-PSSVTGVDISKEALELAKERLRDKGPKVR----FVVADAR 55

Query: 230 RLPFASGFVDAVH-AGAALHCWPSPS--NAVAEISRILRSGG 268
            LPF  G  D V  AG +L           + E +R+LR GG
Sbjct: 56  DLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 51.4 bits (120), Expect = 1e-07
 Identities = 36/184 (19%), Positives = 57/184 (30%), Gaps = 6/184 (3%)

Query: 123 TELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSR 182
            EL       +         F        D    +          G+L D+ CG+G  + 
Sbjct: 6   AELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVL-DIGCGTGRLAL 64

Query: 183 KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFASGFVDA 240
                G  + VV +D S  ML       +         +  V AD     LPF       
Sbjct: 65  LARLGGRGAYVVGVDLSPEMLALARARAEGAGL---GLVDFVVADALGGVLPFEDSASFD 121

Query: 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREDSAELQLFD 300
           +     +     P+ A+ E+ R+L+ GG  V +  LR          +L      L+  D
Sbjct: 122 LVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLAALLGFGDPVLERGD 181

Query: 301 RRRD 304
              +
Sbjct: 182 ILLE 185

Length = 257

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 170 LVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228
           ++D+ CG+G  +   A K G  + VV +D SE  + +      +       N+  ++ D+
Sbjct: 7   VLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAI-EKAKENAKKLGY--ENVEFIQGDI 63

Query: 229 CRLP---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             LP         D V +   L+  P P   + EI R+L+ GGV +
Sbjct: 64  EELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLI 109

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G   +DV+ G+G ++   + S   SG VV LD +ENML++     K++      N+  ++
Sbjct: 48  GNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKY---NIEFLQ 104

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
            +   LPF     D V     L  +P     + E  R+L+ GG  V
Sbjct: 105 GNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVV 150

Length = 233

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 19/115 (16%)

Query: 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA 222
           +   GG ++D+ CG+G+  R   + G    V  +D S   +     F   D  +L     
Sbjct: 19  RLKPGGRVLDIGCGTGILLRLLRERGFD--VTGVDPSPAAVLIFSLFDAPDPAVL----- 71

Query: 223 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277
                       +G  D + A   L   P P   + ++  +L+ GGV + +T L 
Sbjct: 72  ------------AGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVLLISTPLA 114

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 22/103 (21%)

Query: 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227
             ++DV+ G G  S  F K   Y  VVALD++ENML+                + LV  D
Sbjct: 53  KKVLDVAAGKGELSYHFKKVFKYY-VVALDYAENMLK----------------MNLVADD 95

Query: 228 --VC---RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILR 265
             V     LPF     D V +  ALH   +    +AE +R+ R
Sbjct: 96  KVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSR 138

Length = 226

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 4/107 (3%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
            G   +DV CG+  +S   A++    G V+ LDFSENML      +K        N+ LV
Sbjct: 45  AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL---HNVELV 101

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             +   LPF     D V  G  L   P     + E+ R+++ GG  V
Sbjct: 102 HGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVV 148

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           D  CG G  SR + + G  S V ALD S  ML Q       D+ +          D+  L
Sbjct: 48  DAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDAADHYLA--------GDIESL 97

Query: 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276
           P A+   D   +  A+    + S A+ E+ R++R GGV   TT +
Sbjct: 98  PLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142

Length = 251

>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 7/116 (6%)

Query: 156 KMAQEYFKSAQGGLLVDVSCGSG----LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK 211
           +MA  +  +  G  ++D+ CGSG    L S K    G    V+ LDFS   L       +
Sbjct: 63  RMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGK---VMGLDFSSEQLAVAASRQE 119

Query: 212 QDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG 267
                   N+  +  D   LPF   + DA+  G  L        A+ E+ R+L+ G
Sbjct: 120 LKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG 175

Length = 261

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  ++D   GSG F    A++G  + VV ++             +     L   + +V  
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALA--RRRLALAGLAPRVRVVVG 58

Query: 227 DVCRLP-FASGFVDAV--------HAGAALHCWPSPSNAVAEISRILRSGGVFV 271
           D   L     G  D V         AG            +A   R+L+ GGV V
Sbjct: 59  DARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112

This family contains methyltransferase domains. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	304
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.92
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.92
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.91
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.86
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.84
PLN02244	340	tocopherol O-methyltransferase	99.84
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.83
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.83
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.81
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.79
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.79
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.78
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.78
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.78
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.78
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.76
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.75
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.75
PRK05785	226	hypothetical protein; Provisional	99.74
PRK11207	197	tellurite resistance protein TehB; Provisional	99.74
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.74
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.73
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.73
PLN02336	475	phosphoethanolamine N-methyltransferase	99.73
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.73
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.73
PRK08317	241	hypothetical protein; Provisional	99.72
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.72
KOG4300	252	consensus Predicted methyltransferase [General fun	99.72
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.71
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.71
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.71
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.71
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.71
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.69
PLN02490	340	MPBQ/MSBQ methyltransferase	99.69
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.69
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.68
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.67
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.66
PRK12335	287	tellurite resistance protein TehB; Provisional	99.66
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.66
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.65
PRK06922	677	hypothetical protein; Provisional	99.64
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.64
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.63
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.63
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.63
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.63
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.62
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.61
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.61
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.6
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.6
PLN03075	296	nicotianamine synthase; Provisional	99.6
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.59
PRK06202	232	hypothetical protein; Provisional	99.59
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.59
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.59
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.58
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.58
PLN02336	475	phosphoethanolamine N-methyltransferase	99.58
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.58
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.58
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.57
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.57
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.57
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.57
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.56
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.56
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.54
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.53
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.53
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.52
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.51
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.51
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.51
PRK07402	196	precorrin-6B methylase; Provisional	99.5
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.49
KOG1271	227	consensus Methyltransferases [General function pre	99.47
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.47
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.47
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.46
PRK04266	226	fibrillarin; Provisional	99.46
PRK14968	188	putative methyltransferase; Provisional	99.46
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.46
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.45
TIGR03438	301	probable methyltransferase. This model represents	99.44
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.44
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.44
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.43
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.43
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.42
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.42
PRK14967	223	putative methyltransferase; Provisional	99.42
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.41
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.41
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.4
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.39
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.39
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.39
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.39
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.38
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.38
COG4123	248	Predicted O-methyltransferase [General function pr	99.37
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.36
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.36
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.35
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.35
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.35
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.34
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.34
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.32
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.32
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.32
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.31
PRK04457	262	spermidine synthase; Provisional	99.31
TIGR00438	188	rrmJ cell division protein FtsJ.	99.31
KOG3010	261	consensus Methyltransferase [General function pred	99.3
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.29
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.29
PTZ00146	293	fibrillarin; Provisional	99.28
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.28
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.28
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.28
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.28
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.27
PHA03411	279	putative methyltransferase; Provisional	99.26
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.26
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.26
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.25
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.24
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.24
PRK00811	283	spermidine synthase; Provisional	99.22
KOG2361	264	consensus Predicted methyltransferase [General fun	99.22
COG2890	280	HemK Methylase of polypeptide chain release factor	99.19
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	99.18
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.14
COG4122	219	Predicted O-methyltransferase [General function pr	99.13
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.12
PLN02476	278	O-methyltransferase	99.1
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.1
PHA03412	241	putative methyltransferase; Provisional	99.1
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.09
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.09
PRK01581	374	speE spermidine synthase; Validated	99.09
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.08
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.07
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.07
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.06
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.06
PLN02366	308	spermidine synthase	99.05
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.01
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.0
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.98
PRK03612	521	spermidine synthase; Provisional	98.98
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.97
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.97
KOG2940	325	consensus Predicted methyltransferase [General fun	98.96
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.95
PLN02672	1082	methionine S-methyltransferase	98.95
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.94
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.92
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.91
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.91
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.9
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.89
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.89
KOG2899	288	consensus Predicted methyltransferase [General fun	98.88
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.88
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.86
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.86
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.85
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.84
KOG2904	328	consensus Predicted methyltransferase [General fun	98.83
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.82
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.8
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.8
KOG1331	293	consensus Predicted methyltransferase [General fun	98.8
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.79
PRK04148	134	hypothetical protein; Provisional	98.77
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.77
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.74
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.73
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.71
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.68
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.68
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.67
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.67
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.67
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.67
PLN02823	336	spermine synthase	98.67
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.66
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.64
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.64
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.62
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.61
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.61
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.6
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.58
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.57
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.57
COG2520	341	Predicted methyltransferase [General function pred	98.54
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.54
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.54
COG2521	287	Predicted archaeal methyltransferase [General func	98.51
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.51
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.5
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.48
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.48
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.48
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.46
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.45
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.43
PRK00536	262	speE spermidine synthase; Provisional	98.42
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.41
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.4
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.39
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.37
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.36
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.36
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.36
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.33
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.27
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.26
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.25
COG3897	218	Predicted methyltransferase [General function pred	98.24
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.23
PRK11827	60	hypothetical protein; Provisional	98.22
KOG3115	249	consensus Methyltransferase-like protein [General	98.21
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.19
COG2835	60	Uncharacterized conserved protein [Function unknow	98.18
PF13679	141	Methyltransf_32: Methyltransferase domain	98.14
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.1
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.1
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.09
COG4076	252	Predicted RNA methylase [General function predicti	98.06
KOG3201	201	consensus Uncharacterized conserved protein [Funct	98.06
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.05
KOG2730	263	consensus Methylase [General function prediction o	98.01
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.0
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.0
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.99
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.95
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.93
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.92
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.92
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.71
PF03966	68	Trm112p: Trm112p-like protein; InterPro: IPR005651	97.7
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.66
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.66
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.65
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.65
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.64
COG4798	238	Predicted methyltransferase [General function pred	97.56
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.5
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.49
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.48
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.48
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.46
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.42
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.31
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.28
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.25
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.25
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.14
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.12
COG0286	489	HsdM Type I restriction-modification system methyl	97.09
PRK10742	250	putative methyltransferase; Provisional	96.99
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.95
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.85
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.78
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.68
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.65
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.55
PLN02668	386	indole-3-acetate carboxyl methyltransferase	96.53
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.42
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.39
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.22
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.2
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.05
PF03269	177	DUF268: Caenorhabditis protein of unknown function	96.04
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	95.81
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	95.74
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.72
PRK11524	284	putative methyltransferase; Provisional	95.68
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	95.67
PRK00420	112	hypothetical protein; Validated	95.66
PHA01634	156	hypothetical protein	95.58
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.54
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.53
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	95.51
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.5
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	95.39
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	95.36
PRK13699	227	putative methylase; Provisional	95.31
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.26
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	95.25
COG4301	321	Uncharacterized conserved protein [Function unknow	95.24
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	95.15
COG1645	131	Uncharacterized Zn-finger containing protein [Gene	94.84
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	94.81
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	94.8
COG3129	292	Predicted SAM-dependent methyltransferase [General	94.76
KOG2920	282	consensus Predicted methyltransferase [General fun	94.7
PHA00626	59	hypothetical protein	94.62
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.59
KOG2671	421	consensus Putative RNA methylase [Replication, rec	94.51
KOG1088	124	consensus Uncharacterized conserved protein [Funct	94.46
KOG1227	351	consensus Putative methyltransferase [General func	94.44
KOG1501	636	consensus Arginine N-methyltransferase [General fu	94.43
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	94.35
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	94.34
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	94.25
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	94.12
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	94.11
PRK09678	72	DNA-binding transcriptional regulator; Provisional	94.07
COG1565	370	Uncharacterized conserved protein [Function unknow	93.96
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	93.96
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	93.93
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	93.86
PF09862	113	DUF2089: Protein of unknown function (DUF2089); In	93.84
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.29
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.27
PRK10220	111	hypothetical protein; Provisional	93.23
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	93.22
PF09297	32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	93.16
COG1198	730	PriA Primosomal protein N' (replication factor Y)	92.99
PRK00432	50	30S ribosomal protein S27ae; Validated	92.82
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	92.72
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	92.64
PF08792	33	A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: I	92.62
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	92.58
COG1656	165	Uncharacterized conserved protein [Function unknow	92.54
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	92.54
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	92.5
PF11781	36	RRN7: RNA polymerase I-specific transcription init	92.42
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	92.33
KOG2352	482	consensus Predicted spermine/spermidine synthase [	92.23
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.2
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	92.18
COG1568	354	Predicted methyltransferases [General function pre	92.17
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	92.01
PTZ00357	1072	methyltransferase; Provisional	91.86
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	91.82
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	91.81
PF01927	147	Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T	91.81
TIGR00497	501	hsdM type I restriction system adenine methylase (	91.79
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	91.78
PF14353	128	CpXC: CpXC protein	91.69
TIGR00686	109	phnA alkylphosphonate utilization operon protein P	91.64
smart00661	52	RPOL9 RNA polymerase subunit 9.	91.59
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	91.52
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	91.5
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	91.49
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	91.4
TIGR00595	505	priA primosomal protein N'. All proteins in this f	91.39
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	91.37
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	91.15
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	91.09
PF03119	28	DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f	91.08
PRK05580	679	primosome assembly protein PriA; Validated	90.57
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	90.51
PF06677	41	Auto_anti-p27: Sjogren's syndrome/scleroderma auto	90.5
PF13248	26	zf-ribbon_3: zinc-ribbon domain	90.48
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	90.44
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	90.19
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	90.01
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	89.85
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	89.83
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	89.49
PF14205	55	Cys_rich_KTR: Cysteine-rich KTR	89.48
COG1779	201	C4-type Zn-finger protein [General function predic	89.4
PRK11524	284	putative methyltransferase; Provisional	89.39
TIGR03655	53	anti_R_Lar restriction alleviation protein, Lar fa	89.38
PF01780	90	Ribosomal_L37ae: Ribosomal L37ae protein family; I	89.2
PF02150	35	RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I	89.18
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	89.03
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	89.01
COG3877	122	Uncharacterized protein conserved in bacteria [Fun	88.96
PRK14873	665	primosome assembly protein PriA; Provisional	88.9
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	88.86
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	88.57
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	88.53
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	88.52
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	88.27
COG4306	160	Uncharacterized protein conserved in bacteria [Fun	87.96
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	87.81
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	87.8
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	87.77
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	87.66
COG2933	358	Predicted SAM-dependent methyltransferase [General	87.63
COG3677	129	Transposase and inactivated derivatives [DNA repli	87.59
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	87.55
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	87.54
PRK12495	226	hypothetical protein; Provisional	87.43
COG1571	421	Predicted DNA-binding protein containing a Zn-ribb	87.38
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.21
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	87.1
COG3809	88	Uncharacterized protein conserved in bacteria [Fun	87.04
PRK13699	227	putative methylase; Provisional	86.93
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	86.84
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	86.36
PRK07806	248	short chain dehydrogenase; Provisional	86.27
PLN02740	381	Alcohol dehydrogenase-like	86.27
PF14354	61	Lar_restr_allev: Restriction alleviation protein L	86.12
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	86.03
PTZ00255	90	60S ribosomal protein L37a; Provisional	85.84
TIGR00244	147	transcriptional regulator NrdR. Members of this al	85.66
COG1327	156	Predicted transcriptional regulator, consists of a	85.63
PRK12939	250	short chain dehydrogenase; Provisional	85.54
PRK06701	290	short chain dehydrogenase; Provisional	85.52
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	85.27
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	85.16
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	85.12
PF13453	41	zf-TFIIB: Transcription factor zinc-finger	85.09
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	85.01
TIGR00280	91	L37a ribosomal protein L37a. This model finds euka	84.99
COG1326	201	Uncharacterized archaeal Zn-finger protein [Genera	84.97
COG3315	297	O-Methyltransferase involved in polyketide biosynt	84.86
KOG2782	303	consensus Putative SAM dependent methyltransferase	84.82
PLN02827	378	Alcohol dehydrogenase-like	84.8
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	84.73
smart00531	147	TFIIE Transcription initiation factor IIE.	84.66
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	84.63
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	84.57
PRK05854	313	short chain dehydrogenase; Provisional	84.52
PRK07109	334	short chain dehydrogenase; Provisional	84.38
PF04606	47	Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: I	84.31
PLN02586	360	probable cinnamyl alcohol dehydrogenase	84.18
PRK14892	99	putative transcription elongation factor Elf1; Pro	84.01
PRK03976	90	rpl37ae 50S ribosomal protein L37Ae; Reviewed	83.84
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	83.66
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	83.59
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	83.49
KOG2078	495	consensus tRNA modification enzyme [RNA processing	83.4
KOG2906	105	consensus RNA polymerase III subunit C11 [Transcri	83.36
COG1592	166	Rubrerythrin [Energy production and conversion]	83.05
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	82.99
COG1594	113	RPB9 DNA-directed RNA polymerase, subunit M/Transc	82.92
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	82.79
COG1096	188	Predicted RNA-binding protein (consists of S1 doma	82.79
PRK08339	263	short chain dehydrogenase; Provisional	82.7
KOG3507	62	consensus DNA-directed RNA polymerase, subunit RPB	82.66
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	82.47
PF07282	69	OrfB_Zn_ribbon: Putative transposase DNA-binding d	82.47
PRK06181	263	short chain dehydrogenase; Provisional	82.4
PRK07576	264	short chain dehydrogenase; Provisional	82.38
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	82.32
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	82.23
TIGR01384	104	TFS_arch transcription factor S, archaeal. There h	82.15
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	82.12
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	81.98
PRK08265	261	short chain dehydrogenase; Provisional	81.92
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	81.9
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	81.78
PRK08213	259	gluconate 5-dehydrogenase; Provisional	81.72
PRK09072	263	short chain dehydrogenase; Provisional	81.59
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	81.37
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	81.25
PRK08267	260	short chain dehydrogenase; Provisional	81.23
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	81.09
PRK03659	601	glutathione-regulated potassium-efflux system prot	81.08
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	81.07
PRK08324	681	short chain dehydrogenase; Validated	80.9
COG1255	129	Uncharacterized protein conserved in archaea [Func	80.84
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	80.83
PRK06266	178	transcription initiation factor E subunit alpha; V	80.67
PRK07774	250	short chain dehydrogenase; Provisional	80.54
KOG2691	113	consensus RNA polymerase II subunit 9 [Transcripti	80.47
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	80.47
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	80.35
PRK10458	467	DNA cytosine methylase; Provisional	80.19
smart00778	37	Prim_Zn_Ribbon Zinc-binding domain of primase-heli	80.16
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	80.07

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.92  E-value=1.1e-24  Score=193.95  Aligned_cols=178  Identities=22%  Similarity=0.423  Sum_probs=127.9

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCeeeeecccCccCccCCCccccccccCchhhHHHHHhH
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGW  139 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w  139 (304)
                      +|+||+|++++....           ..++|.++++++..++||+++++..........  ...+++..           
T Consensus         2 ~~~CP~C~~~l~~~~-----------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~--d~~~~~~a-----------   57 (272)
T PRK11088          2 SYQCPLCHQPLTLEE-----------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPG--DNKEMMQA-----------   57 (272)
T ss_pred             cccCCCCCcchhcCC-----------CEEEcCCCCCCccccCceEEeccccccCCCCCC--cCHHHHHH-----------
Confidence            489999999996633           689999977777999999999975433221110  01112211           


Q ss_pred             HHhhhcCCCCCc--HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHHhcC
Q 021975          140 RQNFNRSGFPGP--DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFIKQDN  214 (304)
Q Consensus       140 ~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~v~giD~s~~~~~~a~~~~~~~~  214 (304)
                      ++.|...+++.+  +...+.+.+.+. ....+|||+|||+|.++..+++..+.   .+++|+|+|+.+++.|+++     
T Consensus        58 r~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----  131 (272)
T PRK11088         58 RRAFLDAGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----  131 (272)
T ss_pred             HHHHHHCCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----
Confidence            334444443222  222233444433 24568999999999999999876442   3799999999999999874     


Q ss_pred             ccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          215 TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       215 ~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                         ..++.+..+|+.++|+++++||+|++.+.       ...++++.|+|||||+|++.++..
T Consensus       132 ---~~~~~~~~~d~~~lp~~~~sfD~I~~~~~-------~~~~~e~~rvLkpgG~li~~~p~~  184 (272)
T PRK11088        132 ---YPQVTFCVASSHRLPFADQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPGP  184 (272)
T ss_pred             ---CCCCeEEEeecccCCCcCCceeEEEEecC-------CCCHHHHHhhccCCCEEEEEeCCC
Confidence               35788999999999999999999998754       124689999999999999988654

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.92  E-value=1.2e-24  Score=186.98  Aligned_cols=133  Identities=30%  Similarity=0.451  Sum_probs=119.9

Q ss_pred             CchhhHHHHHhHHHhhhcCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 021975          128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY  207 (304)
Q Consensus       128 ~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~  207 (304)
                      |+++|++.++.|++.+..               .+...++.+|||+|||||.++..+++....++|+|+|+|+.|++.++
T Consensus        28 n~~~S~g~~~~Wr~~~i~---------------~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~   92 (238)
T COG2226          28 NDLMSFGLHRLWRRALIS---------------LLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAR   92 (238)
T ss_pred             cccccCcchHHHHHHHHH---------------hhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHH
Confidence            789999999999975432               33334789999999999999999999966789999999999999999


Q ss_pred             HHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++....+.   .++.|+.+|++.+||++++||+|++.+.|++++|++.+|+|+.|+|||||++++.++..+
T Consensus        93 ~k~~~~~~---~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p  160 (238)
T COG2226          93 EKLKKKGV---QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP  160 (238)
T ss_pred             HHhhccCc---cceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence            99988762   349999999999999999999999999999999999999999999999999999998874

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.91  E-value=6.1e-24  Score=184.15  Aligned_cols=133  Identities=30%  Similarity=0.542  Sum_probs=92.6

Q ss_pred             CchhhHHHHHhHHHhhhcCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHH
Q 021975          128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQC  206 (304)
Q Consensus       128 ~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a  206 (304)
                      |.++|++.++.|++..               .+.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.|
T Consensus        24 n~~ls~g~~~~wr~~~---------------~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a   88 (233)
T PF01209_consen   24 NDLLSFGQDRRWRRKL---------------IKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVA   88 (233)
T ss_dssp             -------------SHH---------------HHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHH
T ss_pred             ccccCCcHHHHHHHHH---------------HhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHH
Confidence            7788999999998743               33445567889999999999999999887 5567999999999999999


Q ss_pred             HHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          207 YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       207 ~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      +++.+..+   ..+++++++|++++|+++++||+|++.+.|++++|+.+.++|++|+|||||++++.++..+
T Consensus        89 ~~k~~~~~---~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p  157 (233)
T PF01209_consen   89 RKKLKREG---LQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP  157 (233)
T ss_dssp             HHHHHHTT-----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred             HHHHHhhC---CCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence            99998876   2599999999999999999999999999999999999999999999999999999998874

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.86  E-value=6.9e-21  Score=168.38  Aligned_cols=119  Identities=24%  Similarity=0.369  Sum_probs=101.7

Q ss_pred             HhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCcc
Q 021975          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (304)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f  238 (304)
                      +.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|++|++.|+++..........++.++++|++++|+++++|
T Consensus        67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sf  146 (261)
T PLN02233         67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYF  146 (261)
T ss_pred             HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCE
Confidence            3445556789999999999999988876 455699999999999999988654211002357999999999999999999


Q ss_pred             ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      |+|++.++++|++|+..+++++.|+|||||++++.++...
T Consensus       147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~  186 (261)
T PLN02233        147 DAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS  186 (261)
T ss_pred             eEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence            9999999999999999999999999999999999998764

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.84  E-value=9.8e-21  Score=160.27  Aligned_cols=135  Identities=24%  Similarity=0.312  Sum_probs=120.0

Q ss_pred             CchhhHHHHHhHHHhhhcCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCC------CeEEEEeCCHH
Q 021975          128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY------SGVVALDFSEN  201 (304)
Q Consensus       128 ~~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~------~~v~giD~s~~  201 (304)
                      |+.++.+.++.|+..+               ...+.+.++.++||++||+|..+..+.++-..      .+|+++|+++.
T Consensus        77 ND~mSlGiHRlWKd~~---------------v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~  141 (296)
T KOG1540|consen   77 NDAMSLGIHRLWKDMF---------------VSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPH  141 (296)
T ss_pred             HHHhhcchhHHHHHHh---------------hhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHH
Confidence            7888999999998644               44677778899999999999999888887544      79999999999


Q ss_pred             HHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          202 MLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       202 ~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      |+..++++.++.++.....+.|+++|++++||++.+||..++.+.|.+++++++.|+|++|+|||||+|.+.++..
T Consensus       142 mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk  217 (296)
T KOG1540|consen  142 MLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK  217 (296)
T ss_pred             HHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence            9999999987766434445999999999999999999999999999999999999999999999999999988876

>PLN02244 tocopherol O-methyltransferase

Probab=99.84  E-value=8.4e-20  Score=167.36  Aligned_cols=110  Identities=24%  Similarity=0.326  Sum_probs=100.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.++++.+..+  ...++.++++|+.++|+++++||+|++.
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g--~~~~v~~~~~D~~~~~~~~~~FD~V~s~  193 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG--LSDKVSFQVADALNQPFEDGQFDLVWSM  193 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcCcccCCCCCCCccEEEEC
Confidence            467899999999999999999875 4599999999999999999888776  3467999999999999999999999999


Q ss_pred             chhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .+++|++|+..+++++.++|||||+|++.++..
T Consensus       194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~  226 (340)
T PLN02244        194 ESGEHMPDKRKFVQELARVAAPGGRIIIVTWCH  226 (340)
T ss_pred             CchhccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            999999999999999999999999999998754

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.83  E-value=5e-20  Score=136.96  Aligned_cols=95  Identities=34%  Similarity=0.579  Sum_probs=84.3

Q ss_pred             EEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccC
Q 021975          171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW  250 (304)
Q Consensus       171 LDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~  250 (304)
                      ||+|||+|..+..+++. +..+++|+|+++.+++.++++...      .++.+..+|++++|+++++||+|++..+++|+
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceeec
Confidence            89999999999999999 345999999999999999998754      34669999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhcccCcEEEE
Q 021975          251 PSPSNAVAEISRILRSGGVFVG  272 (304)
Q Consensus       251 ~d~~~~l~~~~r~LkpgG~lvi  272 (304)
                      +++..+++++.|+|||||++++
T Consensus        74 ~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   74 EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHcCcCeEEeC
Confidence            9999999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.83  E-value=1.4e-20  Score=159.31  Aligned_cols=107  Identities=26%  Similarity=0.413  Sum_probs=98.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .++.+|||||||.|.++..+++.|.  +|+|+|+++.+++.|+......+    ..+.+.+..++++....++||+|+|.
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~g----v~i~y~~~~~edl~~~~~~FDvV~cm  131 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALESG----VNIDYRQATVEDLASAGGQFDVVTCM  131 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhcc----ccccchhhhHHHHHhcCCCccEEEEh
Confidence            4688999999999999999999996  99999999999999999887766    45778888888887666899999999


Q ss_pred             chhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .||||++||..+++.+.+++||||.++++|.++
T Consensus       132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             hHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence            999999999999999999999999999999987

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.81  E-value=1.6e-19  Score=163.23  Aligned_cols=108  Identities=22%  Similarity=0.314  Sum_probs=97.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.|+++.+..+  ...++.++++|++++++.+++||+|++.+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~~--~~~~i~~~~~dae~l~~~~~~FD~Vi~~~  206 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMDP--VTSTIEYLCTTAEKLADEGRKFDAVLSLE  206 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--cccceeEEecCHHHhhhccCCCCEEEEhh
Confidence            567999999999999999988765  99999999999999998766543  23579999999999888888999999999


Q ss_pred             hhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +|||+.|+..+++++.++|||||.+++.++.+
T Consensus       207 vLeHv~d~~~~L~~l~r~LkPGG~liist~nr  238 (322)
T PLN02396        207 VIEHVANPAEFCKSLSALTIPNGATVLSTINR  238 (322)
T ss_pred             HHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence            99999999999999999999999999999765

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.79  E-value=1.8e-18  Score=140.78  Aligned_cols=107  Identities=22%  Similarity=0.464  Sum_probs=97.1

Q ss_pred             CCCeEEEEcCCccHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CCCCccceEE
Q 021975          166 QGGLLVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH  242 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~  242 (304)
                      ++.+|||+|||+|.++..++ +.++..+++|+|+++.+++.|+++++..+   ..++.++++|+.+++  ++ +.||+|+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~---~~ni~~~~~d~~~l~~~~~-~~~D~I~   78 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG---LDNIEFIQGDIEDLPQELE-EKFDIII   78 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT---STTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc---ccccceEEeehhccccccC-CCeeEEE
Confidence            46799999999999999999 45667899999999999999999998877   358999999999977  55 7999999


Q ss_pred             ecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +..+++|+.++..+++++.++||+||.+++.++.
T Consensus        79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            9999999999999999999999999999999887

...

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.79  E-value=1e-18  Score=134.45  Aligned_cols=107  Identities=27%  Similarity=0.419  Sum_probs=89.6

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC-CCCCCCCCccceEEec
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHAG  244 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~V~~~  244 (304)
                      |+.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++....+  ...++.++++|+ ..... ...||+|++.
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~-~~~~D~v~~~   77 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG--LSDRITFVQGDAEFDPDF-LEPFDLVICS   77 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT--TTTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECccccCccc-CCCCCEEEEC
Confidence            4789999999999999999996556799999999999999999996555  568999999999 33333 3569999999


Q ss_pred             c-hhccCC---CHHHHHHHHHHhcccCcEEEEEEe
Q 021975          245 A-ALHCWP---SPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       245 ~-vl~h~~---d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      . +++++.   +...+++++.+.|+|||++++.++
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~  112 (112)
T PF12847_consen   78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC  112 (112)
T ss_dssp             SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             CCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            8 555443   457899999999999999999863

...

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.78  E-value=8.8e-18  Score=146.00  Aligned_cols=119  Identities=29%  Similarity=0.430  Sum_probs=104.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      +.+...+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.++++.+..+   ..++.++.+|+..++++
T Consensus        35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~  111 (231)
T TIGR02752        35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG---LHNVELVHGNAMELPFD  111 (231)
T ss_pred             HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEEechhcCCCC
Confidence            34455566667889999999999999999887 456799999999999999999887655   36799999999998888


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++||+|++.++++|++++..+++++.++|||||++++.+...
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  154 (231)
T TIGR02752       112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ  154 (231)
T ss_pred             CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence            8999999999999999999999999999999999999887654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.78  E-value=1.5e-18  Score=153.21  Aligned_cols=109  Identities=20%  Similarity=0.191  Sum_probs=95.6

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (304)
                      .+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+|+.|++.|++          .++.++++|+++++ +++
T Consensus        20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----------~~~~~~~~d~~~~~-~~~   88 (255)
T PRK14103         20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----------RGVDARTGDVRDWK-PKP   88 (255)
T ss_pred             HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----------cCCcEEEcChhhCC-CCC
Confidence            3445566567789999999999999999998766799999999999999976          35789999998775 567


Q ss_pred             ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +||+|++..++||++++..+++++.++|||||++++..+.
T Consensus        89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103         89 DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            9999999999999999999999999999999999987654

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.78  E-value=5.3e-18  Score=150.15  Aligned_cols=134  Identities=13%  Similarity=0.171  Sum_probs=109.0

Q ss_pred             HHHhHHHhhhcCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 021975          135 YERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN  214 (304)
Q Consensus       135 ~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~  214 (304)
                      |+..|...+..   ++..+....+...+...++.+|||||||+|..+..+++.. ..+|+|+|+++.+++.++++...  
T Consensus        24 ~e~~~g~~~~~---~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--   97 (263)
T PTZ00098         24 YEFIFGEDYIS---SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--   97 (263)
T ss_pred             HHHHhCCCCCC---CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--
Confidence            44444443333   3333445566666777788899999999999998887753 45999999999999999987643  


Q ss_pred             ccCCCCeEEEEccCCCCCCCCCccceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          215 TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       215 ~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                         ..++.++.+|+...++++++||+|++..+++|++  ++..+++++.++|||||+|++.++..
T Consensus        98 ---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098         98 ---KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA  159 (263)
T ss_pred             ---CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence               2579999999998889899999999999999987  78899999999999999999998765

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.78  E-value=3.1e-18  Score=151.13  Aligned_cols=109  Identities=18%  Similarity=0.283  Sum_probs=97.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CCCCccceEEe
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHA  243 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~  243 (304)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++.+..+  ...++.++++|+.+++ +.+++||+|++
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g--~~~~v~~~~~d~~~l~~~~~~~fD~V~~  118 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKG--VSDNMQFIHCAAQDIAQHLETPVDLILF  118 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence            3467999999999999999999876  99999999999999999988776  3467899999997764 55789999999


Q ss_pred             cchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..+++|+.+|..+++++.++|||||++++..+..
T Consensus       119 ~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~  152 (255)
T PRK11036        119 HAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA  152 (255)
T ss_pred             hhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence            9999999999999999999999999999887664

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.76  E-value=9.2e-18  Score=147.79  Aligned_cols=113  Identities=27%  Similarity=0.381  Sum_probs=98.6

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      .+.+.+.+...+..+|||+|||+|.++..+...+.  +++|+|+|+.+++.++++.        ....++++|++.+|++
T Consensus        31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~~~~~  100 (251)
T PRK10258         31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKD--------AADHYLAGDIESLPLA  100 (251)
T ss_pred             HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCCEEEcCcccCcCC
Confidence            34555566655677999999999999999988765  9999999999999998853        2356889999999998


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++||+|++..++++.+|+..++.++.++|||||.++++++..
T Consensus       101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~  143 (251)
T PRK10258        101 TATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ  143 (251)
T ss_pred             CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            9999999999999999999999999999999999999998765

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.75  E-value=2.6e-18  Score=146.54  Aligned_cols=105  Identities=31%  Similarity=0.456  Sum_probs=91.6

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCC----CeEEEEccCCCCCCCCCccceEE
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS----NLALVRADVCRLPFASGFVDAVH  242 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~----~i~~~~~d~~~lp~~~~~fD~V~  242 (304)
                      +.+|||+|||+|.++..|++.|.  +|+|||+++.+++.|++....... ...    ++.+.+.+++.+.   +.||+|+
T Consensus        90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP~-~~~~~~y~l~~~~~~~E~~~---~~fDaVv  163 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDPV-LEGAIAYRLEYEDTDVEGLT---GKFDAVV  163 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCch-hccccceeeehhhcchhhcc---cccceee
Confidence            47799999999999999999997  999999999999999998444331 222    3667777877763   5599999


Q ss_pred             ecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      |..|+||+.||..++..+.++|||||.+++++..+
T Consensus       164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence            99999999999999999999999999999999887

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.75  E-value=2.2e-17  Score=150.10  Aligned_cols=118  Identities=23%  Similarity=0.265  Sum_probs=98.4

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      +.+...+...++.+|||||||+|.++..++..++ ..|+|+|+|+.++..++...+..+  ...++.++.+|++++|+ +
T Consensus       112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~--~~~~i~~~~~d~e~lp~-~  187 (322)
T PRK15068        112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLG--NDQRAHLLPLGIEQLPA-L  187 (322)
T ss_pred             HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEeCCHHHCCC-c
Confidence            4555566656788999999999999999999875 369999999999876554333222  13579999999999988 7


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++||+|++..+++|+.++..+++++++.|||||.+++.++..
T Consensus       188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i  229 (322)
T PRK15068        188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVI  229 (322)
T ss_pred             CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEe
Confidence            899999999999999999999999999999999999987543

>PRK05785 hypothetical protein; Provisional

Probab=99.74  E-value=1.9e-17  Score=143.30  Aligned_cols=89  Identities=33%  Similarity=0.356  Sum_probs=81.1

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (304)
                      +.+|||+|||+|.++..+++.+ ..+|+|+|+|++|++.|+++           ..++++|++.+|+++++||+|++.++
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~-----------~~~~~~d~~~lp~~d~sfD~v~~~~~  119 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA-----------DDKVVGSFEALPFRDKSFDVVMSSFA  119 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc-----------cceEEechhhCCCCCCCEEEEEecCh
Confidence            6799999999999999999885 34999999999999999873           23578999999999999999999999


Q ss_pred             hccCCCHHHHHHHHHHhcccC
Q 021975          247 LHCWPSPSNAVAEISRILRSG  267 (304)
Q Consensus       247 l~h~~d~~~~l~~~~r~Lkpg  267 (304)
                      |+|++|+..+++|+.|+|||.
T Consensus       120 l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        120 LHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             hhccCCHHHHHHHHHHHhcCc
Confidence            999999999999999999994

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.74  E-value=5.5e-17  Score=137.68  Aligned_cols=113  Identities=23%  Similarity=0.278  Sum_probs=94.3

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCc
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (304)
                      +.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++.+..+   ..++.+...|+.+.+++ ++
T Consensus        22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~~   95 (197)
T PRK11207         22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAEN---LDNLHTAVVDLNNLTFD-GE   95 (197)
T ss_pred             HHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcC---CCcceEEecChhhCCcC-CC
Confidence            33444445678999999999999999999876  99999999999999999888765   24688999999887764 57


Q ss_pred             cceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          238 VDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       238 fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ||+|++..+++|++  +...+++++.++|||||++++.+..
T Consensus        96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~  136 (197)
T PRK11207         96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM  136 (197)
T ss_pred             cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence            99999999999886  4568999999999999997665443

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.74  E-value=1.2e-16  Score=140.27  Aligned_cols=126  Identities=17%  Similarity=0.272  Sum_probs=101.6

Q ss_pred             CCCcHHHHHHHHHhhc--ccCCCeEEEEcCCccHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEE
Q 021975          148 FPGPDEEFKMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL  223 (304)
Q Consensus       148 ~~~~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~  223 (304)
                      .|.++.....+...+.  ..++.+|||+|||+|..+..+++.  .++.+++|+|+|+.|++.|+++++..+  ...++.+
T Consensus        36 ~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~--~~~~v~~  113 (247)
T PRK15451         36 VPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDV  113 (247)
T ss_pred             CCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEE
Confidence            3555555444443322  235779999999999999888873  456799999999999999999998765  3457999


Q ss_pred             EEccCCCCCCCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          224 VRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       224 ~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++|+..++++  .+|+|++..++||+++.  ..+++++.++|||||.|++.+...
T Consensus       114 ~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~  167 (247)
T PRK15451        114 IEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS  167 (247)
T ss_pred             EeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence            99999988764  49999999999999743  579999999999999999998654

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.73  E-value=1e-16  Score=140.44  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=106.9

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      .+.+.+.+...+|.+|||||||.|.++..+++.. +.+|+|+++|+++.+.++++++..+  ...++++...|..++.  
T Consensus        61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~g--l~~~v~v~l~d~rd~~--  135 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARG--LEDNVEVRLQDYRDFE--  135 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcC--CCcccEEEeccccccc--
Confidence            4567778888899999999999999999999996 5699999999999999999999999  4578999999988864  


Q ss_pred             CCccceEEecchhccCCC--HHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          235 SGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                       +.||-|++..++||+..  ...+++.+.++|+|||++++-+...+.
T Consensus       136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence             45999999999999975  789999999999999999999888765

>TIGR00452 methyltransferase, putative

Probab=99.73  E-value=5.4e-17  Score=146.21  Aligned_cols=116  Identities=21%  Similarity=0.205  Sum_probs=94.6

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (304)
                      .+...+...++.+|||||||+|.++..++..++ ..|+|+|+|+.++..++..-+..+  ...++.+...++++++.. .
T Consensus       112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~--~~~~v~~~~~~ie~lp~~-~  187 (314)
T TIGR00452       112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLD--NDKRAILEPLGIEQLHEL-Y  187 (314)
T ss_pred             HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhc--cCCCeEEEECCHHHCCCC-C
Confidence            445555566788999999999999999988875 379999999999876543222211  135788889999888754 4


Q ss_pred             ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +||+|++.++|+|+++|..+|++++++|||||.|++.+..
T Consensus       188 ~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~  227 (314)
T TIGR00452       188 AFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLV  227 (314)
T ss_pred             CcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEE
Confidence            8999999999999999999999999999999999998764

Known examples to date are restricted to the proteobacteria.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.73  E-value=8.1e-17  Score=154.40  Aligned_cols=119  Identities=18%  Similarity=0.213  Sum_probs=102.7

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      ..+.+.+.+...++.+|||||||+|..+..+++.. +.+++|+|+|+.+++.|+++....    ..++.+..+|+...++
T Consensus       254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~~  328 (475)
T PLN02336        254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKTY  328 (475)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCCC
Confidence            34455555555567899999999999998888764 459999999999999998876532    3579999999998888


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++++||+|++..+++|++++..+++++.++|||||.+++.++..
T Consensus       329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            88899999999999999999999999999999999999998765

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.73  E-value=5.8e-17  Score=137.31  Aligned_cols=114  Identities=18%  Similarity=0.198  Sum_probs=93.3

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (304)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++.+..+    ..+.+...|+...+++ +
T Consensus        21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~-~   93 (195)
T TIGR00477        21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKAREN----LPLRTDAYDINAAALN-E   93 (195)
T ss_pred             HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHhC----CCceeEeccchhcccc-C
Confidence            344455555567999999999999999999875  99999999999999999887665    2477888888766654 5


Q ss_pred             ccceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          237 FVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +||+|++..+++|++  +...+++++.++|||||++++.++..
T Consensus        94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~  136 (195)
T TIGR00477        94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMD  136 (195)
T ss_pred             CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecc
Confidence            799999999999985  44689999999999999977765543

Part of a tellurite-reducing operon tehA and tehB

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.73  E-value=3.8e-17  Score=144.45  Aligned_cols=112  Identities=19%  Similarity=0.267  Sum_probs=96.2

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      +.+...+...++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.++++.        .++.++.+|+..+. ++
T Consensus        21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--------~~~~~~~~d~~~~~-~~   91 (258)
T PRK01683         21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--------PDCQFVEADIASWQ-PP   91 (258)
T ss_pred             HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--------CCCeEEECchhccC-CC
Confidence            3444555556678999999999999999998876779999999999999998853        56889999998764 45


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .+||+|++..+++|++|+..+++++.++|||||.+++..+.
T Consensus        92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683         92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence            68999999999999999999999999999999999987543

>PRK08317 hypothetical protein; Provisional

Probab=99.72  E-value=1.6e-16  Score=138.18  Aligned_cols=117  Identities=34%  Similarity=0.467  Sum_probs=101.9

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      +.+...+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++++...    ...++.+..+|+...+++
T Consensus         9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~~~   84 (241)
T PRK08317          9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG----LGPNVEFVRGDADGLPFP   84 (241)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC----CCCceEEEecccccCCCC
Confidence            445556666678899999999999999999875 567999999999999999987332    236799999999988888


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +++||+|++..+++|+.++..+++++.++|||||.+++.++.
T Consensus        85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence            899999999999999999999999999999999999998753

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.72  E-value=2.9e-17  Score=134.20  Aligned_cols=107  Identities=29%  Similarity=0.507  Sum_probs=87.8

Q ss_pred             HHHHhhc-ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          157 MAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       157 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      .+..... ..++.+|||||||+|.++..+++.+.  +++|+|+++.+++.  .           .+.....+....+.++
T Consensus        12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~~~~~   76 (161)
T PF13489_consen   12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--R-----------NVVFDNFDAQDPPFPD   76 (161)
T ss_dssp             HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--T-----------TSEEEEEECHTHHCHS
T ss_pred             HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--h-----------hhhhhhhhhhhhhccc
Confidence            3444443 45678999999999999999988887  99999999999887  1           1233333333445568


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++||+|+++.+|+|++|+..+|+++.++|||||++++.++...
T Consensus        77 ~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   77 GSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             SSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             cchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            8999999999999999999999999999999999999999863

...

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.72  E-value=4.9e-17  Score=133.78  Aligned_cols=118  Identities=23%  Similarity=0.322  Sum_probs=102.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeE-EEEccCCCCC-C
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCRLP-F  233 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~-~~~~d~~~lp-~  233 (304)
                      .-+..++.......|||+|||+|.....+... +..+|+++|+++.|.+++.+.++++.   +.++. |+.++.+++| +
T Consensus        66 s~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k---~~~~~~fvva~ge~l~~l  141 (252)
T KOG4300|consen   66 SGIYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKK---PLQVERFVVADGENLPQL  141 (252)
T ss_pred             hhhHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhcc---CcceEEEEeechhcCccc
Confidence            34444555555567899999999988766543 35699999999999999999998875   56676 9999999998 8


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++++|+|++..+|..+.||.+.|.++.|+|||||++++.++..
T Consensus       142 ~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva  185 (252)
T KOG4300|consen  142 ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVA  185 (252)
T ss_pred             ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence            89999999999999999999999999999999999999999887

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.71  E-value=1.5e-16  Score=141.70  Aligned_cols=111  Identities=21%  Similarity=0.350  Sum_probs=98.6

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEE
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (304)
                      ..++.+|||+|||+|..+..+++. ++..+|+|+|+++.+++.|+++....+   ..++.++.+|++.+++++++||+|+
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g---~~~v~~~~~d~~~l~~~~~~fD~Vi  151 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG---YTNVEFRLGEIEALPVADNSVDVII  151 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC---CCCEEEEEcchhhCCCCCCceeEEE
Confidence            456889999999999988776665 555689999999999999999887765   3588999999999998888999999


Q ss_pred             ecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +..+++|+++...+++++.++|||||+|++.++..
T Consensus       152 ~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~  186 (272)
T PRK11873        152 SNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVL  186 (272)
T ss_pred             EcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence            99999999999999999999999999999987654

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.71  E-value=1.3e-16  Score=138.09  Aligned_cols=107  Identities=21%  Similarity=0.265  Sum_probs=96.0

Q ss_pred             CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchh
Q 021975          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL  247 (304)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl  247 (304)
                      .+|||||||+|.++..+++.++..+++|+|+|+.+++.++++++..+  ...++.++..|+...+++ ++||+|++..++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g--l~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l   77 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG--LQGRIRIFYRDSAKDPFP-DTYDLVFGFEVI   77 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CCcceEEEecccccCCCC-CCCCEeehHHHH
Confidence            37999999999999999988766799999999999999999998776  457899999999776664 589999999999


Q ss_pred             ccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          248 HCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       248 ~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +|+.++..+++++.++|||||++++.++..
T Consensus        78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  107 (224)
T smart00828       78 HHIKDKMDLFSNISRHLKDGGHLVLADFIA  107 (224)
T ss_pred             HhCCCHHHHHHHHHHHcCCCCEEEEEEccc
Confidence            999999999999999999999999988643

>TIGR00740 methyltransferase, putative

Probab=99.71  E-value=2.5e-16  Score=137.66  Aligned_cols=108  Identities=17%  Similarity=0.245  Sum_probs=94.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      ++.+|||+|||+|.++..+++..  ++.+++|+|+|+.|++.|+++++..+  ...++.++++|+..++++  .+|+|++
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~--~~d~v~~  128 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHVEIK--NASMVIL  128 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCCCC--CCCEEee
Confidence            56799999999999999998863  56799999999999999999987654  345789999999988865  4899999


Q ss_pred             cchhccCCC--HHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          244 GAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       244 ~~vl~h~~d--~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .++++|+++  +..+++++.++|||||.+++.++..
T Consensus       129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence            999999974  4689999999999999999998765

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.71  E-value=2e-16  Score=137.66  Aligned_cols=105  Identities=28%  Similarity=0.464  Sum_probs=95.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      .+.+|||+|||+|.++..+++.++..+++|+|+++.+++.++++..       .++.++.+|+...++++++||+|++.+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~~  106 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSNL  106 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEhh
Confidence            3568999999999999999999887789999999999999988642       468899999999988889999999999


Q ss_pred             hhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++|+.++..+++++.++|||||.+++.++..
T Consensus       107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~  138 (240)
T TIGR02072       107 ALQWCDDLSQALSELARVLKPGGLLAFSTFGP  138 (240)
T ss_pred             hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            99999999999999999999999999988654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.71  E-value=1.4e-16  Score=141.13  Aligned_cols=117  Identities=21%  Similarity=0.269  Sum_probs=94.5

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      .+.+.+.+...++.+|||||||.|.++..++++. +++|+|+++|++..+.++++++..+  ...++.+...|..+++  
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g--l~~~v~v~~~D~~~~~--  125 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG--LEDRVEVRLQDYRDLP--  125 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST--SSSTEEEEES-GGG----
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEeeccccC--
Confidence            4566677777889999999999999999999994 4599999999999999999999988  5678999999988765  


Q ss_pred             CCccceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                       .+||.|++..++||+.  +...+++++.++|||||++++.+...
T Consensus       126 -~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~  169 (273)
T PF02353_consen  126 -GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH  169 (273)
T ss_dssp             --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred             -CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence             3899999999999995  56899999999999999999877665

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.69  E-value=6.5e-17  Score=122.33  Aligned_cols=95  Identities=32%  Similarity=0.552  Sum_probs=80.3

Q ss_pred             EEEEcCCccHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec-c
Q 021975          170 LVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG-A  245 (304)
Q Consensus       170 vLDiGcG~G~~~~~l~~~~---~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~-~  245 (304)
                      |||+|||+|..+..+.+..   +..+++|+|+|+.+++.++++....+    .+++++++|+.++++.+++||+|++. .
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~----~~~~~~~~D~~~l~~~~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG----PKVRFVQADARDLPFSDGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT----TTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC----CceEEEECCHhHCcccCCCeeEEEEcCC
Confidence            7999999999999999875   34699999999999999999987755    48999999999999888999999995 5


Q ss_pred             hhccCCCH--HHHHHHHHHhcccCc
Q 021975          246 ALHCWPSP--SNAVAEISRILRSGG  268 (304)
Q Consensus       246 vl~h~~d~--~~~l~~~~r~LkpgG  268 (304)
                      +++|+.+.  ..+++++.++|||||
T Consensus        77 ~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   77 SLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            59998744  579999999999998

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.69  E-value=4.5e-16  Score=141.33  Aligned_cols=106  Identities=23%  Similarity=0.358  Sum_probs=94.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.|+++...      .++.++.+|++++++++++||+|++.
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~------~~i~~i~gD~e~lp~~~~sFDvVIs~  185 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIIEGDAEDLPFPTDYADRYVSA  185 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc------cCCeEEeccHHhCCCCCCceeEEEEc
Confidence            356799999999999998888775556999999999999999986532      46789999999999988999999999


Q ss_pred             chhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .+++|++++..+++++.++|||||++++....
T Consensus       186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~  217 (340)
T PLN02490        186 GSIEYWPDPQRGIKEAYRVLKIGGKACLIGPV  217 (340)
T ss_pred             ChhhhCCCHHHHHHHHHHhcCCCcEEEEEEec
Confidence            99999999999999999999999999887654

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.69  E-value=7.1e-18  Score=127.07  Aligned_cols=97  Identities=25%  Similarity=0.379  Sum_probs=66.6

Q ss_pred             EEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CCCCccceEEecchhc
Q 021975          171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAALH  248 (304)
Q Consensus       171 LDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl~  248 (304)
                      ||||||+|.++..+.+..+..+++|+|+|+.+++.+++++....   ..+...+..+..+..  ...++||+|++..++|
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~   77 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH   77 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence            79999999999999999777899999999999998888887764   233444444433322  1125999999999999


Q ss_pred             cCCCHHHHHHHHHHhcccCcEE
Q 021975          249 CWPSPSNAVAEISRILRSGGVF  270 (304)
Q Consensus       249 h~~d~~~~l~~~~r~LkpgG~l  270 (304)
                      |++++..+++++.++|||||+|
T Consensus        78 ~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   78 HLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             --S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhhhHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.68  E-value=1.6e-15  Score=127.23  Aligned_cols=103  Identities=19%  Similarity=0.172  Sum_probs=91.0

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (304)
                      +.+|||+|||+|..+..+++..+..+|+|+|+++.+++.|+++.+..+.   .++.++.+|+.+++. .++||+|++.. 
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l---~~i~~~~~d~~~~~~-~~~fDlV~~~~-  120 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL---KNVTVVHGRAEEFGQ-EEKFDVVTSRA-  120 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC---CCEEEEeccHhhCCC-CCCccEEEEcc-
Confidence            7899999999999999998876677999999999999999999998873   459999999988876 77999999975 


Q ss_pred             hccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       247 l~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                         +.++..+++++.++|||||++++.....
T Consensus       121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~~~  148 (187)
T PRK00107        121 ---VASLSDLVELCLPLLKPGGRFLALKGRD  148 (187)
T ss_pred             ---ccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence               4577889999999999999999887543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.67  E-value=2.9e-15  Score=130.37  Aligned_cols=119  Identities=30%  Similarity=0.475  Sum_probs=102.5

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      .+...+...++.+|||+|||+|.++..++..++ ..+++|+|+++.+++.+++++...+  ...++.++.+|+...++..
T Consensus        42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~  119 (239)
T PRK00216         42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG--LSGNVEFVQGDAEALPFPD  119 (239)
T ss_pred             HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc--cccCeEEEecccccCCCCC
Confidence            334444444678999999999999999998875 5799999999999999999886644  2467899999999888777


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++||+|++.++++|+.++..+++++.++|+|||++++.+...
T Consensus       120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  161 (239)
T PRK00216        120 NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSK  161 (239)
T ss_pred             CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence            899999999999999999999999999999999999987755

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.66  E-value=9.5e-16  Score=134.55  Aligned_cols=118  Identities=21%  Similarity=0.264  Sum_probs=95.5

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      +.+...+..-.+++|||||||+|+++..+...|+ ..|+|+|++.....+.+-.-+-.+  ....+..+...++++|. .
T Consensus       105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg--~~~~~~~lplgvE~Lp~-~  180 (315)
T PF08003_consen  105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLG--QDPPVFELPLGVEDLPN-L  180 (315)
T ss_pred             HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhC--CCccEEEcCcchhhccc-c
Confidence            5566677667899999999999999999999985 579999999977665443322222  12334555467788887 7


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +.||+|++.+||.|..+|...|.+++..|++||.+++-|..-
T Consensus       181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi  222 (315)
T PF08003_consen  181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVI  222 (315)
T ss_pred             CCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence            899999999999999999999999999999999999988764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.66  E-value=1.7e-15  Score=136.01  Aligned_cols=104  Identities=18%  Similarity=0.224  Sum_probs=89.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ++++|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++.+..+    .++.+...|+...++ +++||+|++..
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~~----l~v~~~~~D~~~~~~-~~~fD~I~~~~  192 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKEN----LNIRTGLYDINSASI-QEEYDFILSTV  192 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEechhcccc-cCCccEEEEcc
Confidence            456999999999999999999875  99999999999999999888766    378888889877655 67899999999


Q ss_pred             hhccCC--CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          246 ALHCWP--SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       246 vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +++|++  +...+++++.++|||||++++....
T Consensus       193 vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~  225 (287)
T PRK12335        193 VLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAM  225 (287)
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            999986  4568999999999999997775543

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.66  E-value=3.9e-15  Score=116.23  Aligned_cols=114  Identities=23%  Similarity=0.231  Sum_probs=92.4

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA  234 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~  234 (304)
                      ..+.+.+...++.+|||+|||+|.++..+++..+..+++|+|+++.+++.++++.+..+   ..++.++.+|+.. ++..
T Consensus         9 ~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~   85 (124)
T TIGR02469         9 ALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG---VSNIVIVEGDAPEALEDS   85 (124)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC---CCceEEEeccccccChhh
Confidence            44555555556779999999999999999998766799999999999999999888765   2578999888764 3333


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ..+||+|++....++   ...+++++.+.|||||+|++...
T Consensus        86 ~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        86 LPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             cCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEec
Confidence            468999999776543   35889999999999999998764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.65  E-value=2.5e-15  Score=128.04  Aligned_cols=101  Identities=12%  Similarity=0.261  Sum_probs=86.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++.        .++.+.++|+.. |+++++||+|++.+
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~--------~~~~~~~~d~~~-~~~~~sfD~V~~~~  113 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL--------PNINIIQGSLFD-PFKDNFFDLVLTKG  113 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC--------CCCcEEEeeccC-CCCCCCEEEEEECC
Confidence            467899999999999999998755669999999999999998853        457788999888 88899999999999


Q ss_pred             hhccCC--CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          246 ALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       246 vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +|+|++  +...+++++.+++  ++.+++.++..
T Consensus       114 vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~  145 (204)
T TIGR03587       114 VLIHINPDNLPTAYRELYRCS--NRYILIAEYYN  145 (204)
T ss_pred             hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence            999995  2357889999987  56888888755

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK06922 hypothetical protein; Provisional

Probab=99.64  E-value=2.1e-15  Score=145.13  Aligned_cols=108  Identities=19%  Similarity=0.309  Sum_probs=94.0

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CCCCccceEE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH  242 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~  242 (304)
                      .++.+|||+|||+|.++..+++..++.+++|+|+|+.|++.|+++....+    .++.++++|+.+++  +++++||+|+
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g----~~ie~I~gDa~dLp~~fedeSFDvVV  492 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG----RSWNVIKGDAINLSSSFEKESVDTIV  492 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC----CCeEEEEcchHhCccccCCCCEEEEE
Confidence            35789999999999999999988788899999999999999998765543    56888999998887  7889999999


Q ss_pred             ecchhccCC-------------CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          243 AGAALHCWP-------------SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       243 ~~~vl~h~~-------------d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ++.++||+.             ++..+++++.++|||||.+++.+..
T Consensus       493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v  539 (677)
T PRK06922        493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI  539 (677)
T ss_pred             EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            999998762             4578999999999999999998753

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.64  E-value=8.1e-15  Score=125.54  Aligned_cols=111  Identities=24%  Similarity=0.242  Sum_probs=88.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC---------ccCCCCeEEEEccCCCCCCC-
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLPFA-  234 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~~~~i~~~~~d~~~lp~~-  234 (304)
                      .++.+|||+|||.|..+..|+++|.  +|+|+|+|+.+++.+.+......         .....+++++++|+.+++.. 
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            3567999999999999999999988  99999999999998644221100         00135789999999887642 


Q ss_pred             CCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .+.||.|+...+++|++..  ..+++.+.++|||||++++.++..
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~  155 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY  155 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence            4579999999999999644  358999999999999988877654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.63  E-value=7.9e-15  Score=126.31  Aligned_cols=115  Identities=30%  Similarity=0.425  Sum_probs=99.6

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (304)
                      +...+...++.+|||+|||+|.++..+++.++. .+++|+|+++.+++.++++.. .    ..++.++.+|+.+.+++++
T Consensus        31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~----~~~i~~~~~d~~~~~~~~~  105 (223)
T TIGR01934        31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L----PLNIEFIQADAEALPFEDN  105 (223)
T ss_pred             HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c----CCCceEEecchhcCCCCCC
Confidence            333444446789999999999999999988764 689999999999999998765 1    2578999999998888778


Q ss_pred             ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +||+|++.++++|..++..+++++.++|+|||++++.++..
T Consensus       106 ~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  146 (223)
T TIGR01934       106 SFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSK  146 (223)
T ss_pred             cEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            99999999999999999999999999999999999988754

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.63  E-value=7.2e-15  Score=122.70  Aligned_cols=112  Identities=19%  Similarity=0.270  Sum_probs=90.4

Q ss_pred             HHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCcc
Q 021975          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (304)
Q Consensus       159 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f  238 (304)
                      .+.+...+++++||+|||.|+.+..|++.|.  .|+++|.|+.+++.+++..+..+    ..+...+.|+....++ +.|
T Consensus        23 ~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~~----l~i~~~~~Dl~~~~~~-~~y   95 (192)
T PF03848_consen   23 LEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEEG----LDIRTRVADLNDFDFP-EEY   95 (192)
T ss_dssp             HHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS-T-TTE
T ss_pred             HHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhcC----ceeEEEEecchhcccc-CCc
Confidence            3334445678999999999999999999998  99999999999999988887766    4599999999887775 689


Q ss_pred             ceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          239 DAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       239 D~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      |+|++..|++|++.+  ..+++.+...++|||++++.++..
T Consensus        96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~  136 (192)
T PF03848_consen   96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFME  136 (192)
T ss_dssp             EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred             CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence            999999999998744  468999999999999999877755

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.63  E-value=6.8e-15  Score=123.01  Aligned_cols=101  Identities=16%  Similarity=0.220  Sum_probs=86.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ++.+|||+|||+|.++..++..++..+|+|+|+++.+++.++++.+..+   ..++.++++|+.+++ ..++||+|++..
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~---~~~i~~i~~d~~~~~-~~~~fD~I~s~~  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG---LNNVEIVNGRAEDFQ-HEEQFDVITSRA  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC---CCCeEEEecchhhcc-ccCCccEEEehh
Confidence            4789999999999999998887777799999999999999999888776   246999999998874 357899999976


Q ss_pred             hhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          246 ALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                       +   .+...+++.+.++|||||++++..
T Consensus       118 -~---~~~~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       118 -L---ASLNVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             -h---hCHHHHHHHHHHhcCCCCEEEEEc
Confidence             3   456678899999999999999874

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.63  E-value=9e-15  Score=124.87  Aligned_cols=114  Identities=20%  Similarity=0.177  Sum_probs=93.0

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      ....+.+.+...++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|+++++..+  ...++.++.+|+.+..
T Consensus        60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~~~~v~~~~~d~~~~~  137 (205)
T PRK13944         60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--YWGVVEVYHGDGKRGL  137 (205)
T ss_pred             HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEECCcccCC
Confidence            34556666766678899999999999998888763 34599999999999999999998776  3346899999997754


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ...++||+|++..+++|++      +++.+.|||||+|++...
T Consensus       138 ~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        138 EKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             ccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEEc
Confidence            4567999999999988765      468899999999988653

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.62  E-value=3.5e-15  Score=127.07  Aligned_cols=109  Identities=19%  Similarity=0.231  Sum_probs=91.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC-CCCC--CCCCccceEE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP--FASGFVDAVH  242 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp--~~~~~fD~V~  242 (304)
                      ++.+|||+|||+|.++..+++..+..+++|+|+++.+++.++++++..+   ..++.++++|+ ..++  +++++||+|+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~D~V~  116 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG---LTNLRLLCGDAVEVLLDMFPDGSLDRIY  116 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC---CCCEEEEecCHHHHHHHHcCccccceEE
Confidence            5679999999999999999988777799999999999999999988765   26799999999 6665  6678999999


Q ss_pred             ecchhccCC--------CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          243 AGAALHCWP--------SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       243 ~~~vl~h~~--------d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +.+......        ....+++++.++|||||+|++.+...
T Consensus       117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~  159 (202)
T PRK00121        117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE  159 (202)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence            876532211        13678999999999999999987543

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.61  E-value=1.7e-14  Score=130.69  Aligned_cols=118  Identities=15%  Similarity=0.125  Sum_probs=100.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      +.+.+.+...+..+|||||||+|.++..+++++|..+++++|. +.+++.++++++..+  ...+++++.+|+.+.+++.
T Consensus       139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g--l~~rv~~~~~d~~~~~~~~  215 (306)
T TIGR02716       139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESYPE  215 (306)
T ss_pred             HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC--ccceEEEEecCccCCCCCC
Confidence            4445555555678999999999999999999998889999997 789999999998877  4578999999998766543


Q ss_pred             CccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          236 GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                        +|+|++.+++|++.+.  ..+++++.+.|||||++++.++...
T Consensus       216 --~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~  258 (306)
T TIGR02716       216 --ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID  258 (306)
T ss_pred             --CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence              6999999999998765  4789999999999999999987553

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.61  E-value=7.3e-15  Score=121.48  Aligned_cols=110  Identities=17%  Similarity=0.250  Sum_probs=87.7

Q ss_pred             HHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCcc
Q 021975          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (304)
Q Consensus       159 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f  238 (304)
                      ...++...-.++||+|||.|.++..|+....  +++++|+++.+++.|+++++..     +++.|.++|+... .+.++|
T Consensus        36 ~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~dvp~~-~P~~~F  107 (201)
T PF05401_consen   36 LAALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGL-----PHVEWIQADVPEF-WPEGRF  107 (201)
T ss_dssp             HHHHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-E
T ss_pred             HHhcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECcCCCC-CCCCCe
Confidence            3345665667899999999999999999976  9999999999999999998753     6899999999774 468899


Q ss_pred             ceEEecchhccCCCH---HHHHHHHHHhcccCcEEEEEEeC
Q 021975          239 DAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       239 D~V~~~~vl~h~~d~---~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      |+|+++.+++++.+.   ..+++.+...|+|||.|++.++.
T Consensus       108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r  148 (201)
T PF05401_consen  108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR  148 (201)
T ss_dssp             EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            999999999999764   46899999999999999999874

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.60  E-value=4e-15  Score=123.49  Aligned_cols=111  Identities=19%  Similarity=0.212  Sum_probs=100.3

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCc
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (304)
                      +...+...+..+|.|+|||+|..+..|+++.|.+.++|+|-|++|++.|+++        .+++.|..+|+.... ++..
T Consensus        22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~-p~~~   92 (257)
T COG4106          22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWK-PEQP   92 (257)
T ss_pred             HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcC-CCCc
Confidence            4455666677899999999999999999999999999999999999999884        588999999998875 4678


Q ss_pred             cceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +|+++++.+|+.++|-..+|..+...|.|||+|.+..+..
T Consensus        93 ~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN  132 (257)
T COG4106          93 TDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN  132 (257)
T ss_pred             cchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence            9999999999999999999999999999999999987765

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.60  E-value=2.5e-14  Score=119.51  Aligned_cols=113  Identities=15%  Similarity=0.232  Sum_probs=93.6

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (304)
                      ++...+...++.+|||+|||+|.++..+++.++  +++|+|+++.+++.++++++..+    .++.++.+|+...+  .+
T Consensus        10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~--~~   81 (179)
T TIGR00537        10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN----VGLDVVMTDLFKGV--RG   81 (179)
T ss_pred             HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEccccccc--CC
Confidence            444555555677999999999999999999886  99999999999999999988765    46889999987654  45


Q ss_pred             ccceEEecchhccCCC---------------------HHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          237 FVDAVHAGAALHCWPS---------------------PSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d---------------------~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +||+|+++..+++.++                     ...+++++.++|||||.+++.+...
T Consensus        82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~  143 (179)
T TIGR00537        82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL  143 (179)
T ss_pred             cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence            8999999988776653                     2457999999999999999988654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.60  E-value=2.7e-14  Score=126.61  Aligned_cols=107  Identities=11%  Similarity=0.087  Sum_probs=90.2

Q ss_pred             CCCeEEEEcCCccHHHHH--HHHhCCCCeEEEEeCCHHHHHHHHHHHHh-cCccCCCCeEEEEccCCCCCCCCCccceEE
Q 021975          166 QGGLLVDVSCGSGLFSRK--FAKSGTYSGVVALDFSENMLRQCYDFIKQ-DNTILTSNLALVRADVCRLPFASGFVDAVH  242 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~--l~~~~~~~~v~giD~s~~~~~~a~~~~~~-~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (304)
                      ++.+|+|||||.|.++..  ++..+++++++|+|+++++++.|++.++. .+  ...++.|..+|+.+.+-..+.||+|+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g--L~~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD--LSKRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC--ccCCcEEEECchhhcccccCCcCEEE
Confidence            678999999998855443  33457788999999999999999999854 44  45789999999987643357899999


Q ss_pred             ecchhccC--CCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          243 AGAALHCW--PSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       243 ~~~vl~h~--~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +. +++++  .++.++++++.+.|+|||++++...
T Consensus       201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             Ee-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence            99 99998  6899999999999999999999874

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.59  E-value=3.8e-14  Score=117.48  Aligned_cols=119  Identities=21%  Similarity=0.370  Sum_probs=96.0

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      -.+++.+.+...+..+|||+|||+|..+..+++.++..+|+++|+++.+++.++++++.++.   .++.++..|..+. .
T Consensus        19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~---~~v~~~~~d~~~~-~   94 (170)
T PF05175_consen   19 GTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL---ENVEVVQSDLFEA-L   94 (170)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC---TTEEEEESSTTTT-C
T ss_pred             HHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc---ccccccccccccc-c
Confidence            34566666666678899999999999999999999877799999999999999999999873   2399999998663 3


Q ss_pred             CCCccceEEecchhccCCC-----HHHHHHHHHHhcccCcEEEEEEeC
Q 021975          234 ASGFVDAVHAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d-----~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ++++||+|+++--++.-.+     ...++++..+.|||||.+++....
T Consensus        95 ~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~  142 (170)
T PF05175_consen   95 PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS  142 (170)
T ss_dssp             CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence            4789999999876554443     357899999999999999876653

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK06202 hypothetical protein; Provisional

Probab=99.59  E-value=1.7e-14  Score=125.52  Aligned_cols=107  Identities=18%  Similarity=0.241  Sum_probs=86.4

Q ss_pred             cccCCCeEEEEcCCccHHHHHHHH----hCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCcc
Q 021975          163 KSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f  238 (304)
                      ...++.+|||+|||+|.++..+++    .+++.+++|+|+++.+++.|+++...      .++.+...+...++..+++|
T Consensus        57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~f  130 (232)
T PRK06202         57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVAEGERF  130 (232)
T ss_pred             CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccccCCCc
Confidence            334567999999999999888775    35556999999999999999886532      34667777777777677899


Q ss_pred             ceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          239 DAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       239 D~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      |+|++++++||++++  ..+++++.++++  |.+++.+..+
T Consensus       131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~  169 (232)
T PRK06202        131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR  169 (232)
T ss_pred             cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence            999999999999986  479999999998  5667767665

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.59  E-value=1.4e-14  Score=128.19  Aligned_cols=110  Identities=14%  Similarity=0.175  Sum_probs=85.6

Q ss_pred             CCCeEEEEcCCccHH----HHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHHHh----cCc-----------------
Q 021975          166 QGGLLVDVSCGSGLF----SRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQ----DNT-----------------  215 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~----~~~l~~~~~-----~~~v~giD~s~~~~~~a~~~~~~----~~~-----------------  215 (304)
                      ++.+|||+|||+|.-    +..+++.++     +.+++|+|+|+.+++.|++..-.    .+.                 
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            456899999999973    334444432     46899999999999999985310    000                 


Q ss_pred             ---cCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEe
Q 021975          216 ---ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       216 ---~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~  275 (304)
                         ....++.|.++|+.+.+++.++||+|+|.++++|++++.  .++++++++|||||+|++..-
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~  243 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS  243 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence               001368999999999877788999999999999997554  799999999999999998653

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.59  E-value=2e-14  Score=133.62  Aligned_cols=112  Identities=17%  Similarity=0.181  Sum_probs=93.5

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      +.+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++.+.      ..+.+...|...+   +
T Consensus       157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l---~  226 (383)
T PRK11705        157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL---N  226 (383)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---C
Confidence            344455666678899999999999999998874 35999999999999999997742      3478888888765   4


Q ss_pred             CccceEEecchhccCCC--HHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++||.|++..+++|+.+  +..+++++.++|||||++++.++..
T Consensus       227 ~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~  270 (383)
T PRK11705        227 GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS  270 (383)
T ss_pred             CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence            68999999999999964  4689999999999999999988754

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.58  E-value=4.2e-14  Score=121.30  Aligned_cols=113  Identities=18%  Similarity=0.195  Sum_probs=92.9

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      .....+.+.+...++.+|||||||+|+++..+++. +...+|+++|+++.+++.++++++..+   ..++.++.+|....
T Consensus        63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g---~~~v~~~~gd~~~~  139 (212)
T PRK13942         63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG---YDNVEVIVGDGTLG  139 (212)
T ss_pred             HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccC
Confidence            44556666777778899999999999999888877 445699999999999999999998876   35799999998776


Q ss_pred             CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ....+.||+|++....++++      ..+.+.|||||++++..
T Consensus       140 ~~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        140 YEENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CCcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence            55678999999988776553      45777899999988854

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.58  E-value=3.5e-14  Score=123.60  Aligned_cols=117  Identities=22%  Similarity=0.347  Sum_probs=98.6

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-C
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F  233 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~  233 (304)
                      ++.+...+...++.+|||||||+|.++..+.+.+.  +++++|+++.+++.+++++...+    ..+.++..++.+.+ .
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~  110 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALESG----LKIDYRQTTAEELAAE  110 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHcC----CceEEEecCHHHhhhh
Confidence            34555555555688999999999999999988765  89999999999999999877654    36788888887654 3


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .++.||+|++.++++|++++..+++.+.++|+|||.+++..+..
T Consensus       111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~  154 (233)
T PRK05134        111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNR  154 (233)
T ss_pred             cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence            45789999999999999999999999999999999999887653

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.58  E-value=2e-14  Score=137.84  Aligned_cols=114  Identities=22%  Similarity=0.315  Sum_probs=95.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC--CCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLPF  233 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~--~lp~  233 (304)
                      ..+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.+++...     ...++.++++|+.  .+++
T Consensus        27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~-----~~~~i~~~~~d~~~~~~~~   99 (475)
T PLN02336         27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESING-----HYKNVKFMCADVTSPDLNI   99 (475)
T ss_pred             hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhc-----cCCceEEEEecccccccCC
Confidence            3455555555677999999999999999999865  99999999999988765322     2357899999986  4677


Q ss_pred             CCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeC
Q 021975          234 ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ++++||+|++..+++|+++.  ..+++++.++|||||++++.+..
T Consensus       100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~  144 (475)
T PLN02336        100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC  144 (475)
T ss_pred             CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            78899999999999999874  68999999999999999998754

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.58  E-value=6.9e-14  Score=117.69  Aligned_cols=114  Identities=19%  Similarity=0.166  Sum_probs=92.8

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      ....+...+...++.+|||+|||+|.++..+++.++..+++++|+++.+++.++++.+..+.   .++.++.+|+.. ++
T Consensus        19 ~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~---~~i~~~~~d~~~-~~   94 (187)
T PRK08287         19 VRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC---GNIDIIPGEAPI-EL   94 (187)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC---CCeEEEecCchh-hc
Confidence            33445566666678899999999999999999887778999999999999999999887662   468999988743 33


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                       .++||+|++....++   ...+++++.+.|||||++++...
T Consensus        95 -~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287         95 -PGKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             -CcCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEEe
Confidence             357999999876543   46789999999999999988654

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.58  E-value=1.4e-14  Score=122.62  Aligned_cols=109  Identities=18%  Similarity=0.255  Sum_probs=89.6

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCccceEE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVH  242 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~  242 (304)
                      ...+|||||||+|.++..+++..++.+++|+|+++.+++.|+++....++   .++.++++|+..++   ++++++|.|+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l---~ni~~i~~d~~~~~~~~~~~~~~d~v~   92 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL---KNLHVLCGDANELLDKFFPDGSLSKVF   92 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC---CCEEEEccCHHHHHHhhCCCCceeEEE
Confidence            35699999999999999999998888999999999999999998887762   58999999997643   4566899999


Q ss_pred             ecchhccCCC--------HHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          243 AGAALHCWPS--------PSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       243 ~~~vl~h~~d--------~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +.+...+...        ...+++++.++|||||.|++.+...
T Consensus        93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~  135 (194)
T TIGR00091        93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE  135 (194)
T ss_pred             EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence            8754322111        1468999999999999999987554

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.57  E-value=3.2e-14  Score=130.59  Aligned_cols=112  Identities=21%  Similarity=0.288  Sum_probs=94.3

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCC
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFAS  235 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~  235 (304)
                      +...+....+..+||||||+|.++..+++..|+..++|+|+++.+++.+.+++...++   .++.++++|+..+  .+++
T Consensus       114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL---~NV~~i~~DA~~ll~~~~~  190 (390)
T PRK14121        114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL---KNLLIINYDARLLLELLPS  190 (390)
T ss_pred             HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHhhhhCCC
Confidence            3444445556799999999999999999998888999999999999999999988763   6899999998654  4778


Q ss_pred             CccceEEecchhccCCCH-----------HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++|.|++.+     ++|           ..+++++.|+|+|||.+.+.|-..
T Consensus       191 ~s~D~I~lnF-----PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~  238 (390)
T PRK14121        191 NSVEKIFVHF-----PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE  238 (390)
T ss_pred             CceeEEEEeC-----CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence            9999999854     454           578999999999999999977443

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.57  E-value=4.9e-14  Score=121.56  Aligned_cols=111  Identities=23%  Similarity=0.383  Sum_probs=90.4

Q ss_pred             HHHHHHhhc--ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          155 FKMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       155 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      .+.+.+++.  ..++.+|||+|||+|.++..+++.+.  +++|+|+++.++..|++++...+  ...++.+.++|+..++
T Consensus        42 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~~  117 (219)
T TIGR02021        42 RRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRD--VAGNVEFEVNDLLSLC  117 (219)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChhhCC
Confidence            344445554  34678999999999999999998765  99999999999999999987665  2357999999998875


Q ss_pred             CCCCccceEEecchhccCCC--HHHHHHHHHHhcccCcEEEE
Q 021975          233 FASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVG  272 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~lvi  272 (304)
                         ++||+|++..+++|++.  ...+++++.+++++++++.+
T Consensus       118 ---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       118 ---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             ---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence               68999999999999864  46789999999987665554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.57  E-value=1.9e-14  Score=118.85  Aligned_cols=105  Identities=16%  Similarity=0.329  Sum_probs=87.9

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CC-C
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-F  233 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-~  233 (304)
                      +.+.+++.+  +.+|||+|||.|.++..|.+.- +.+.+|+|++++.+..+.+          .++.++++|++. ++ |
T Consensus         5 ~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~----------rGv~Viq~Dld~gL~~f   71 (193)
T PF07021_consen    5 QIIAEWIEP--GSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVA----------RGVSVIQGDLDEGLADF   71 (193)
T ss_pred             HHHHHHcCC--CCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHH----------cCCCEEECCHHHhHhhC
Confidence            345555544  7899999999999999999863 5699999999999988877          578899999965 43 8


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ++++||.|+++.+|+++.+|..+|+|+.|+   |...+++.++
T Consensus        72 ~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPN  111 (193)
T PF07021_consen   72 PDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPN  111 (193)
T ss_pred             CCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecC
Confidence            899999999999999999999999999776   4456665554

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.57  E-value=7.4e-14  Score=120.03  Aligned_cols=110  Identities=23%  Similarity=0.226  Sum_probs=86.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC---------ccCCCCeEEEEccCCCCCCC-
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLPFA-  234 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~~~~i~~~~~d~~~lp~~-  234 (304)
                      .++.+|||+|||.|..+..|+++|.  +|+|+|+|+.+++.+.+......         .....++++.++|+.+++.. 
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~  113 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD  113 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence            4567999999999999999999988  99999999999998743211100         00135789999999887533 


Q ss_pred             CCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeC
Q 021975          235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .+.||+|+...+++|++..  ..+++.+.++|||||++++.++.
T Consensus       114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~  157 (218)
T PRK13255        114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLD  157 (218)
T ss_pred             CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            2589999999999999743  47899999999999976654443

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.56  E-value=6.6e-14  Score=120.97  Aligned_cols=107  Identities=26%  Similarity=0.374  Sum_probs=93.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC-CCccceEEec
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG  244 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~  244 (304)
                      .+.+|||+|||+|.++..+++.+.  +++|+|+++.+++.+++++...+   ..++.+..+|+.+.+.. .++||+|++.
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~i~~~  119 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDP---LLKIEYRCTSVEDLAEKGAKSFDVVTCM  119 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence            467999999999999999988775  79999999999999999887654   12688999998776644 3789999999


Q ss_pred             chhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++++|+.++..+++++.++|+|||.+++.+...
T Consensus       120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~  152 (224)
T TIGR01983       120 EVLEHVPDPQAFIRACAQLLKPGGILFFSTINR  152 (224)
T ss_pred             hHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            999999999999999999999999999887643

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.56  E-value=9e-14  Score=119.61  Aligned_cols=112  Identities=16%  Similarity=0.124  Sum_probs=92.0

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      ....+.+.+...++.+|||||||+|.++..+++... ..+|+++|+++.+++.|+++++..+   ..++.++.+|.....
T Consensus        65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g---~~~v~~~~~d~~~~~  141 (215)
T TIGR00080        65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG---LDNVIVIVGDGTQGW  141 (215)
T ss_pred             HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCeEEEECCcccCC
Confidence            445666677777889999999999999999998743 4579999999999999999998876   267999999997654


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ....+||+|++.....++      ...+.+.|||||++++..
T Consensus       142 ~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       142 EPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV  177 (215)
T ss_pred             cccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence            445689999998776655      356788999999998865

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.54  E-value=2.6e-13  Score=115.22  Aligned_cols=118  Identities=17%  Similarity=0.263  Sum_probs=93.9

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      +........+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.++++++..+  ...++.++.+|..+.
T Consensus        27 ~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~~~~v~~~~~d~~~~  104 (198)
T PRK00377         27 EIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--VLNNIVLIKGEAPEI  104 (198)
T ss_pred             HHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCCeEEEEechhhh
Confidence            33444456667778899999999999999988775 455699999999999999999988876  346789999998663


Q ss_pred             -CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          232 -PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       232 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                       +...+.||.|++..   ...++..+++++.+.|||||++++...
T Consensus       105 l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        105 LFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             HhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee
Confidence             32246899999854   345778899999999999999987443

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.53  E-value=5.1e-14  Score=109.02  Aligned_cols=106  Identities=23%  Similarity=0.359  Sum_probs=88.6

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CCCCccceEEec
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG  244 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~  244 (304)
                      |.+|||+|||+|.++..+.+.+ ..+++|+|+++..++.++.++...+  ...+++++++|+.+..  +++++||+|+++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n   77 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG--LDDRVEVIVGDARDLPEPLPDGKFDLIVTN   77 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT--TTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc--CCceEEEEECchhhchhhccCceeEEEEEC
Confidence            4589999999999999999998 5699999999999999999999877  4578999999998765  778999999997


Q ss_pred             chhccCC--------CHHHHHHHHHHhcccCcEEEEEEe
Q 021975          245 AALHCWP--------SPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       245 ~vl~h~~--------d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      -......        ....+++++.++|||||.+++.++
T Consensus        78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            6554321        124789999999999999999875

...

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.53  E-value=1.6e-13  Score=126.46  Aligned_cols=121  Identities=13%  Similarity=0.115  Sum_probs=95.9

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      -.+++.+.++....++|||+|||+|..+..+++.+|..+|+++|+|+.+++.++++++.++.....++.++..|.... +
T Consensus       216 GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~  294 (378)
T PRK15001        216 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V  294 (378)
T ss_pred             HHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-C
Confidence            345677777665567999999999999999999988889999999999999999999877521123688998887542 3


Q ss_pred             CCCccceEEecchhccC---CC--HHHHHHHHHHhcccCcEEEEEEe
Q 021975          234 ASGFVDAVHAGAALHCW---PS--PSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~---~d--~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +.++||+|+++-.+|..   .+  ..++++++.++|||||.|+++..
T Consensus       295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence            45689999997655432   22  24789999999999999999864

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.52  E-value=1.6e-13  Score=117.35  Aligned_cols=100  Identities=22%  Similarity=0.231  Sum_probs=80.4

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--------CC
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA  234 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~  234 (304)
                      ..++.+|||||||+|.++..+++.. +..+|+|+|+++ +          .   ...++.++++|+.+.+        +.
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~---~~~~v~~i~~D~~~~~~~~~i~~~~~  114 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------D---PIVGVDFLQGDFRDELVLKALLERVG  114 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------c---CCCCcEEEecCCCChHHHHHHHHHhC
Confidence            3457899999999999999998874 446999999988 1          1   1256899999998853        56


Q ss_pred             CCccceEEecchhccCCCH-----------HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++||+|++..+.++..++           ..+|+++.++|||||.|++..+..
T Consensus       115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~  168 (209)
T PRK11188        115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG  168 (209)
T ss_pred             CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence            7899999998766665443           357999999999999999988765

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.51  E-value=3.9e-13  Score=122.98  Aligned_cols=116  Identities=17%  Similarity=0.215  Sum_probs=94.2

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      .+.+.+.+.....++|||+|||+|.++..+++.++..+++++|+++.+++.++++++.++    ....++.+|....  .
T Consensus       185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~----l~~~~~~~D~~~~--~  258 (342)
T PRK09489        185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG----LEGEVFASNVFSD--I  258 (342)
T ss_pred             HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCEEEEcccccc--c
Confidence            345556565545568999999999999999999877899999999999999999998876    2456777787553  2


Q ss_pred             CCccceEEecchhccCC-----CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          235 SGFVDAVHAGAALHCWP-----SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~-----d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .+.||+|+++..+|+..     ....+++++.+.|||||.|+++...
T Consensus       259 ~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            57899999998887632     3468899999999999999988753

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.51  E-value=1.4e-13  Score=116.50  Aligned_cols=97  Identities=16%  Similarity=0.310  Sum_probs=79.7

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-C-CCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-PFA  234 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-p~~  234 (304)
                      .+.+.+.  ++.+|||+|||+|.++..+++.. ..+++|+|+++.+++.+++          .++.++++|+.+ + +++
T Consensus         6 ~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----------~~~~~~~~d~~~~l~~~~   72 (194)
T TIGR02081         6 SILNLIP--PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----------RGVNVIQGDLDEGLEAFP   72 (194)
T ss_pred             HHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----------cCCeEEEEEhhhcccccC
Confidence            4444544  46799999999999999887664 3488999999999998865          356788889865 4 367


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhccc
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRS  266 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkp  266 (304)
                      +++||+|++.+++||++++..+++++.+.+++
T Consensus        73 ~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        73 DKSFDYVILSQTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             CCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence            78999999999999999999999999887664

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.51  E-value=3.4e-13  Score=116.98  Aligned_cols=108  Identities=22%  Similarity=0.347  Sum_probs=84.8

Q ss_pred             HHHHHHhhcc---cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          155 FKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       155 ~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      .+.+...+..   .++.+|||||||+|.++..+++.+.  .++|+|+++.+++.|+++....+  ...++.+..+|+.. 
T Consensus        49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~-  123 (230)
T PRK07580         49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAG--LAGNITFEVGDLES-  123 (230)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CccCcEEEEcCchh-
Confidence            3344444433   4567999999999999999998876  89999999999999999887765  23578999998533 


Q ss_pred             CCCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcE
Q 021975          232 PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGV  269 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~  269 (304)
                        .+++||+|++..+++|++++  ..+++++.+.++++++
T Consensus       124 --~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~  161 (230)
T PRK07580        124 --LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLI  161 (230)
T ss_pred             --ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEE
Confidence              36789999999999998755  4678888887654443

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.50  E-value=7.4e-13  Score=112.25  Aligned_cols=119  Identities=14%  Similarity=0.134  Sum_probs=92.6

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-  230 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-  230 (304)
                      .+....+...+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++++..+   ..++.++.+|+.+ 
T Consensus        26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~---~~~v~~~~~d~~~~  102 (196)
T PRK07402         26 REVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG---VKNVEVIEGSAPEC  102 (196)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCCeEEEECchHHH
Confidence            334445677777667889999999999999999877666799999999999999999998776   2579999998854 


Q ss_pred             CCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++.....+|.|+...    ..+...+++++.++|||||++++..+..
T Consensus       103 ~~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~  145 (196)
T PRK07402        103 LAQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASSL  145 (196)
T ss_pred             HhhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence            222123467765532    2355789999999999999999988654

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.49  E-value=7.3e-13  Score=113.67  Aligned_cols=112  Identities=17%  Similarity=0.132  Sum_probs=91.0

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      .....+...+...++.+|||+|||+|.++..+++...  +++++|+++.+++.++++++..+   ..++.++.+|.....
T Consensus        65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~  139 (212)
T PRK00312         65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLG---LHNVSVRHGDGWKGW  139 (212)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCC---CCceEEEECCcccCC
Confidence            3445666677777788999999999999988887764  89999999999999999998876   256999999986532


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ...++||+|++...++++      .+++.+.|+|||++++...
T Consensus       140 ~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        140 PAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence            234789999998877665      3567889999999998775

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.47  E-value=3.3e-13  Score=109.18  Aligned_cols=108  Identities=22%  Similarity=0.365  Sum_probs=91.9

Q ss_pred             CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchh
Q 021975          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL  247 (304)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl  247 (304)
                      .+|||+|||+|.++..|++.+....++|+|.|+.+++.|+...+..+  ....|.|.+.|+.+..+..+.||+|+-...+
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~--~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~  146 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG--FSNEIRFQQLDITDPDFLSGQFDLVLDKGTL  146 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC--CCcceeEEEeeccCCcccccceeEEeecCce
Confidence            39999999999999999999876779999999999999999888887  3455999999998877778899999987776


Q ss_pred             ccCC--------CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          248 HCWP--------SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       248 ~h~~--------d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..+.        .+..++..+.++|+|||+|+|+..+-
T Consensus       147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~  184 (227)
T KOG1271|consen  147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF  184 (227)
T ss_pred             eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence            6543        12357888999999999999988664

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.47  E-value=8.3e-13  Score=119.26  Aligned_cols=113  Identities=20%  Similarity=0.259  Sum_probs=84.3

Q ss_pred             HHHHHHHHhhcc---cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc--CCCCeEEEEcc
Q 021975          153 EEFKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRAD  227 (304)
Q Consensus       153 ~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d  227 (304)
                      ...+.+.+++..   .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.++++.+.....  ...++.|...|
T Consensus       128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D  205 (315)
T PLN02585        128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND  205 (315)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence            344445555543   2567999999999999999999875  9999999999999999988654200  12467888888


Q ss_pred             CCCCCCCCCccceEEecchhccCCCHH--HHHHHHHHhcccCcEEE
Q 021975          228 VCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFV  271 (304)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lv  271 (304)
                      +..+   +++||+|++..+++|+++..  .+++.+.+ +.+||.++
T Consensus       206 l~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI  247 (315)
T PLN02585        206 LESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII  247 (315)
T ss_pred             hhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence            8654   57899999999999998653  45666664 45655544

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.47  E-value=2.6e-13  Score=111.28  Aligned_cols=85  Identities=24%  Similarity=0.259  Sum_probs=74.2

Q ss_pred             EEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEE
Q 021975          194 VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       194 ~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~  273 (304)
                      +|+|+|++|++.|+++.+..+.....++.++++|++++|+++++||+|++.++++|++|+..++++++|+|||||.|++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            48999999999998776532210234799999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCC
Q 021975          274 TFLRY  278 (304)
Q Consensus       274 ~~~~~  278 (304)
                      ++...
T Consensus        81 d~~~~   85 (160)
T PLN02232         81 DFNKS   85 (160)
T ss_pred             ECCCC
Confidence            98763

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.46  E-value=2.3e-12  Score=105.78  Aligned_cols=121  Identities=19%  Similarity=0.224  Sum_probs=103.1

Q ss_pred             CcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC
Q 021975          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (304)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (304)
                      +..+........|.+.++.+++|||||+|..+..++..++..+++++|-++++++..+++.+..+   .+++.++.+++.
T Consensus        18 TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---~~n~~vv~g~Ap   94 (187)
T COG2242          18 TKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---VDNLEVVEGDAP   94 (187)
T ss_pred             cHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---CCcEEEEeccch
Confidence            44556667778888999999999999999999999988999999999999999999999999997   589999999996


Q ss_pred             CCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +.--...+||.|+....    .+.+.+++.+...|||||++++....-
T Consensus        95 ~~L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitl  138 (187)
T COG2242          95 EALPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITL  138 (187)
T ss_pred             HhhcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence            53212227999999887    356788999999999999999876543

>PRK04266 fibrillarin; Provisional

Probab=99.46  E-value=1.9e-12  Score=111.80  Aligned_cols=104  Identities=17%  Similarity=0.233  Sum_probs=81.7

Q ss_pred             hcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC----CCCCCc
Q 021975          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGF  237 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~  237 (304)
                      +...++.+|||+|||+|.++..+++..+..+|+|+|+++.|++.+.++.+..     .++.++.+|+...    ++. ++
T Consensus        68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l~-~~  141 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHVV-EK  141 (226)
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhcc-cc
Confidence            6666788999999999999999998754569999999999999887765432     5789999998652    222 46


Q ss_pred             cceEEecchhccCCCHH---HHHHHHHHhcccCcEEEEEEeC
Q 021975          238 VDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ||+|++.     +.++.   .+++++.++|||||.++++.+.
T Consensus       142 ~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~  178 (226)
T PRK04266        142 VDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKA  178 (226)
T ss_pred             CCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            9999853     33443   4689999999999999996543

>PRK14968 putative methyltransferase; Provisional

Probab=99.46  E-value=1.3e-12  Score=109.62  Aligned_cols=117  Identities=21%  Similarity=0.262  Sum_probs=88.9

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      ..+...+...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.+++++...+. ...++.++.+|+.+ ++.+
T Consensus        13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~~~d~~~-~~~~   88 (188)
T PRK14968         13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGK--KVVGVDINPYAVECAKCNAKLNNI-RNNGVEVIRSDLFE-PFRG   88 (188)
T ss_pred             HHHHHhhhccCCCEEEEEccccCHHHHHHHhhcc--eEEEEECCHHHHHHHHHHHHHcCC-CCcceEEEeccccc-cccc
Confidence            3444455445678999999999999999998854  999999999999999999887662 11128899999866 3455


Q ss_pred             CccceEEecchhccCC---------------------CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          236 GFVDAVHAGAALHCWP---------------------SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~---------------------d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .+||+|+++..+.+..                     ....+++++.++|||||.+++....
T Consensus        89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~  150 (188)
T PRK14968         89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS  150 (188)
T ss_pred             cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            6899999875443211                     1346799999999999998887643

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.46  E-value=1.8e-12  Score=116.12  Aligned_cols=121  Identities=17%  Similarity=0.225  Sum_probs=91.3

Q ss_pred             HHHHHHHHHhhc-ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          152 DEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       152 ~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      +.+.+.+...+. ..+..+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++.+..+  ...++.++++|+.+
T Consensus        99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~--~~~~v~~~~~d~~~  176 (284)
T TIGR00536        99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ--LEHRVEFIQSNLFE  176 (284)
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhc
Confidence            334444443332 222368999999999999999998877899999999999999999998876  33469999999866


Q ss_pred             CCCCCCccceEEec-------------chhccCC------------CHHHHHHHHHHhcccCcEEEEEEe
Q 021975          231 LPFASGFVDAVHAG-------------AALHCWP------------SPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       231 lp~~~~~fD~V~~~-------------~vl~h~~------------d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                       +++..+||+|+++             .++.|-|            ....+++++.++|+|||++++..-
T Consensus       177 -~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g  245 (284)
T TIGR00536       177 -PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG  245 (284)
T ss_pred             -cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence             3444589999985             2333333            234678999999999999887664

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.45  E-value=1.6e-12  Score=116.62  Aligned_cols=104  Identities=20%  Similarity=0.304  Sum_probs=84.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.|+++.+.++  ....+.+...+...  ..+++||+|+++.
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~--~~~~~~~~~~~~~~--~~~~~fDlVvan~  233 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQ--VSDRLQVKLIYLEQ--PIEGKADVIVANI  233 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcC--CCcceEEEeccccc--ccCCCceEEEEec
Confidence            57899999999999998888776 3589999999999999999998876  34556677666433  3367899999976


Q ss_pred             hhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..++   ...++.++.++|||||+++++....
T Consensus       234 ~~~~---l~~ll~~~~~~LkpgG~li~sgi~~  262 (288)
T TIGR00406       234 LAEV---IKELYPQFSRLVKPGGWLILSGILE  262 (288)
T ss_pred             CHHH---HHHHHHHHHHHcCCCcEEEEEeCcH
Confidence            5443   3578999999999999999988654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR03438 probable methyltransferase

Probab=99.44  E-value=2.7e-12  Score=115.96  Aligned_cols=110  Identities=18%  Similarity=0.208  Sum_probs=84.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CCCCCC----ccc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASG----FVD  239 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~----~fD  239 (304)
                      ++.+|||+|||+|..+..+.+..+ ..+|+|+|+|++|++.+++++....  ...++.++++|+.+ +++...    ...
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~--p~~~v~~i~gD~~~~~~~~~~~~~~~~~  140 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY--PQLEVHGICADFTQPLALPPEPAAGRRL  140 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC--CCceEEEEEEcccchhhhhcccccCCeE
Confidence            467899999999999999998854 3599999999999999999876543  23567788999876 333332    233


Q ss_pred             eEEecchhccCCC--HHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          240 AVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       240 ~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++++..+++|++.  ...+|++++++|+|||.|++.....
T Consensus       141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~  180 (301)
T TIGR03438       141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV  180 (301)
T ss_pred             EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence            4555567888763  3468999999999999999866544

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.44  E-value=3.3e-12  Score=109.65  Aligned_cols=110  Identities=14%  Similarity=0.157  Sum_probs=89.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh---------cCccCCCCeEEEEccCCCCCCC-
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---------DNTILTSNLALVRADVCRLPFA-  234 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---------~~~~~~~~i~~~~~d~~~lp~~-  234 (304)
                      .++.+||+.|||.|..+..|++.|.  +|+|+|+|+.+++.+.+....         .......+++++++|+.+++.. 
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            3568999999999999999999998  899999999999998663210         0001235799999999998632 


Q ss_pred             --CCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeC
Q 021975          235 --SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       235 --~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                        .+.||+|+-...+.+++..  .+..+.+.++|+|||.+++.++.
T Consensus       120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence              2589999999999999744  47899999999999998888764

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.44  E-value=2.2e-12  Score=117.96  Aligned_cols=121  Identities=20%  Similarity=0.264  Sum_probs=96.6

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ..+...+.......++.+|||+|||+|.++..++..+.  +++|+|+++.+++.++.+++..+.   .++.++.+|+.++
T Consensus       168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g~---~~i~~~~~D~~~l  242 (329)
T TIGR01177       168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYGI---EDFFVKRGDATKL  242 (329)
T ss_pred             HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhCC---CCCeEEecchhcC
Confidence            34455555555666788999999999999988877665  999999999999999999988773   3488999999999


Q ss_pred             CCCCCccceEEecchh------c-c-C-CCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          232 PFASGFVDAVHAGAAL------H-C-W-PSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl------~-h-~-~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      |+++++||+|++....      . + . .....+++++.++|||||++++..+..
T Consensus       243 ~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~  297 (329)
T TIGR01177       243 PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR  297 (329)
T ss_pred             CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence            9888899999996321      1 1 1 113678999999999999999888654

This family is found exclusively in the Archaea.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.43  E-value=3.6e-13  Score=112.18  Aligned_cols=112  Identities=27%  Similarity=0.398  Sum_probs=86.7

Q ss_pred             HHHHHhhc--ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC-CCCC
Q 021975          156 KMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP  232 (304)
Q Consensus       156 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp  232 (304)
                      +...+.+.  ..++.-|||||||+|..+..+...|+  ..+|+|+|+.|++.|.+.--        .-.++.+|+ +.+|
T Consensus        38 eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e~--------egdlil~DMG~Glp  107 (270)
T KOG1541|consen   38 ERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVEREL--------EGDLILCDMGEGLP  107 (270)
T ss_pred             HHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhhh--------hcCeeeeecCCCCC
Confidence            33344443  33477899999999999999999987  99999999999999997321        134667777 6689


Q ss_pred             CCCCccceEEecchhccC-------CCHH----HHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 FASGFVDAVHAGAALHCW-------PSPS----NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~-------~d~~----~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      |+.++||.+++...+..+       .+|.    .++..+..+|++|++.++..+-.
T Consensus       108 frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe  163 (270)
T KOG1541|consen  108 FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE  163 (270)
T ss_pred             CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence            999999999987665443       2333    57888999999999999887654

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.43  E-value=3.5e-12  Score=114.16  Aligned_cols=107  Identities=21%  Similarity=0.223  Sum_probs=85.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++.+.++  ...++.++.+|+.. ++++++||+|+++-
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~--~~~~i~~~~~D~~~-~~~~~~fD~Iv~NP  197 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG--LEDRVTLIQSDLFA-ALPGRKYDLIVSNP  197 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhh-ccCCCCccEEEECC
Confidence            4568999999999999999998777799999999999999999998877  34579999999854 23456899999851


Q ss_pred             ------hhccC-----CCH--------------HHHHHHHHHhcccCcEEEEEEe
Q 021975          246 ------ALHCW-----PSP--------------SNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       246 ------vl~h~-----~d~--------------~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                            .+.++     .+|              ..+++++.++|+|||++++...
T Consensus       198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g  252 (284)
T TIGR03533       198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG  252 (284)
T ss_pred             CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence                  11111     122              3568889999999999987664

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=3.5e-12  Score=106.99  Aligned_cols=112  Identities=17%  Similarity=0.146  Sum_probs=95.9

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      .+...+.+.+...++.+|||||||+|+.+..|++...  +|+.+|..+...+.|+++++..+   ..++.++++|...--
T Consensus        59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg---~~nV~v~~gDG~~G~  133 (209)
T COG2518          59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG---YENVTVRHGDGSKGW  133 (209)
T ss_pred             HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC---CCceEEEECCcccCC
Confidence            4556778888888999999999999999999999876  99999999999999999999987   467999999997643


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      -+...||.|+.......+|+.      +.+.||+||++++-.-
T Consensus       134 ~~~aPyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         134 PEEAPYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCCCcCEEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence            345899999999888877644      5678999999998664

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.42  E-value=4.7e-12  Score=111.19  Aligned_cols=117  Identities=22%  Similarity=0.284  Sum_probs=90.1

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      ...+.+.+.+.. .+.+|||+|||+|.++..++...+..+++|+|+++.+++.++++++..+.   .++.++.+|+.. +
T Consensus        75 ~l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~~~-~  149 (251)
T TIGR03534        75 ELVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL---DNVTFLQSDWFE-P  149 (251)
T ss_pred             HHHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhc-c
Confidence            334444444433 35689999999999999999987777999999999999999999987762   479999999876 4


Q ss_pred             CCCCccceEEecchh------ccCC--------------------CHHHHHHHHHHhcccCcEEEEEE
Q 021975          233 FASGFVDAVHAGAAL------HCWP--------------------SPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl------~h~~--------------------d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +++++||+|+++-..      +++.                    ....+++++.++|+|||++++..
T Consensus       150 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~  217 (251)
T TIGR03534       150 LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI  217 (251)
T ss_pred             CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            567899999985321      1111                    01357899999999999998865

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14967 putative methyltransferase; Provisional

Probab=99.42  E-value=4.2e-12  Score=109.86  Aligned_cols=107  Identities=20%  Similarity=0.202  Sum_probs=83.9

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      ..++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.++++++..+    .++.++.+|+... +++++||+|++
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~----~~~~~~~~d~~~~-~~~~~fD~Vi~  107 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAG----VDVDVRRGDWARA-VEFRPFDVVVS  107 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhC----CeeEEEECchhhh-ccCCCeeEEEE
Confidence            3456799999999999999988875 3599999999999999999887765    3688899998663 45678999999


Q ss_pred             cchhccCCC---------------------HHHHHHHHHHhcccCcEEEEEEeC
Q 021975          244 GAALHCWPS---------------------PSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       244 ~~vl~h~~d---------------------~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +-...+...                     ...+++++.++|||||++++....
T Consensus       108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~  161 (223)
T PRK14967        108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE  161 (223)
T ss_pred             CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            743221111                     345788999999999999986543

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=4.9e-12  Score=108.37  Aligned_cols=118  Identities=21%  Similarity=0.274  Sum_probs=103.8

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      .....++..++...++.+|||.|.|+|.++.+|+.. ++.++|+.+|+.++..+.|+++++..+  ..+++.+..+|+.+
T Consensus        80 PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~--l~d~v~~~~~Dv~~  157 (256)
T COG2519          80 PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG--LGDRVTLKLGDVRE  157 (256)
T ss_pred             CCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc--cccceEEEeccccc
Confidence            345567888888899999999999999999999975 777899999999999999999999987  45669999999988


Q ss_pred             CCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .-+.+ .||+|+..     +++|..+++.+...|||||.+++..++-
T Consensus       158 ~~~~~-~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~v  198 (256)
T COG2519         158 GIDEE-DVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPTV  198 (256)
T ss_pred             ccccc-ccCEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence            66655 89999985     5899999999999999999999888765

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.41  E-value=2.6e-12  Score=121.53  Aligned_cols=128  Identities=18%  Similarity=0.210  Sum_probs=98.9

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC-
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-  233 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-  233 (304)
                      ...+...+...++.+|||+|||+|..+..+++..+.++++++|+++.+++.++++++..+.  ...+.+..+|....+. 
T Consensus       227 s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~v~~~~~d~~~~~~~  304 (426)
T TIGR00563       227 AQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--TIKAETKDGDGRGPSQW  304 (426)
T ss_pred             HHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEecccccccccc
Confidence            3455566777788999999999999999999875457999999999999999999998873  2334457777665443 


Q ss_pred             -CCCccceEEe------cchhccCCC----------------HHHHHHHHHHhcccCcEEEEEEeCCCCCCccc
Q 021975          234 -ASGFVDAVHA------GAALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSL  284 (304)
Q Consensus       234 -~~~~fD~V~~------~~vl~h~~d----------------~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~  284 (304)
                       ..++||.|++      .+++.+.++                ...+|+++.++|||||+|+.+|..-....+..
T Consensus       305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~  378 (426)
T TIGR00563       305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSE  378 (426)
T ss_pred             ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHH
Confidence             4678999995      356766665                24789999999999999999987664444433

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.40  E-value=1.7e-12  Score=110.56  Aligned_cols=114  Identities=18%  Similarity=0.184  Sum_probs=88.4

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      .....+.+.+...++.+|||||||+|+++..++.. ++...|+++|.++..++.|+++++..+   ..++.++.+|....
T Consensus        59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---~~nv~~~~gdg~~g  135 (209)
T PF01135_consen   59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---IDNVEVVVGDGSEG  135 (209)
T ss_dssp             HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT---THSEEEEES-GGGT
T ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc---cCceeEEEcchhhc
Confidence            34566777788888999999999999999999987 555589999999999999999999887   35899999998654


Q ss_pred             CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      --....||.|++......++      ..+.+.||+||++++-.-
T Consensus       136 ~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  136 WPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             TGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred             cccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence            33457899999998776543      346778999999998664

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.39  E-value=8.3e-12  Score=112.80  Aligned_cols=105  Identities=21%  Similarity=0.223  Sum_probs=84.3

Q ss_pred             CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc--
Q 021975          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA--  245 (304)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~--  245 (304)
                      .+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++++..+  ...++.++++|+.+ ++++++||+|+++-  
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~--l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPy  211 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG--LEDRVTLIESDLFA-ALPGRRYDLIVSNPPY  211 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--CCCcEEEEECchhh-hCCCCCccEEEECCCC
Confidence            68999999999999999998777899999999999999999998876  34579999999854 23456899999861  


Q ss_pred             ----h-------hccCCC------------HHHHHHHHHHhcccCcEEEEEEe
Q 021975          246 ----A-------LHCWPS------------PSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       246 ----v-------l~h~~d------------~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                          .       ++|-+.            ...+++++.++|+|||++++...
T Consensus       212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g  264 (307)
T PRK11805        212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG  264 (307)
T ss_pred             CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence                0       122221            13678999999999999998653

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.39  E-value=5e-12  Score=94.09  Aligned_cols=101  Identities=27%  Similarity=0.404  Sum_probs=85.2

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC-CCCccceEEecchh
Q 021975          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAGAAL  247 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~~vl  247 (304)
                      +|+|+|||.|.++..+.+ ....+++++|+++..+..+++.....   ...++.++..|+.+... ..++||+|++..++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~   76 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPPEADESFDVIISDPPL   76 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhccccCCceEEEEEccce
Confidence            589999999999999988 33569999999999999998543332   24678999999987653 46789999999999


Q ss_pred             cc-CCCHHHHHHHHHHhcccCcEEEEE
Q 021975          248 HC-WPSPSNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       248 ~h-~~d~~~~l~~~~r~LkpgG~lvi~  273 (304)
                      ++ ..+...+++.+.+.|+|||.+++.
T Consensus        77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          77 HHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            99 778889999999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.39  E-value=5.9e-12  Score=119.08  Aligned_cols=120  Identities=17%  Similarity=0.255  Sum_probs=93.4

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--C
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F  233 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~  233 (304)
                      ..+...+...++.+|||+|||+|..+..+++.++..+|+++|+++.+++.++++++..+    .++.++++|+..++  +
T Consensus       234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g----~~~~~~~~D~~~~~~~~  309 (427)
T PRK10901        234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG----LKATVIVGDARDPAQWW  309 (427)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEcCcccchhhc
Confidence            34445666677889999999999999999988655699999999999999999998876    34789999998754  3


Q ss_pred             CCCccceEEecc------hhccCC------CH----------HHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          234 ASGFVDAVHAGA------ALHCWP------SP----------SNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       234 ~~~~fD~V~~~~------vl~h~~------d~----------~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      ..++||.|++..      ++.+-+      .+          ..+++++.++|||||+++++|..-..
T Consensus       310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~  377 (427)
T PRK10901        310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP  377 (427)
T ss_pred             ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            457899999532      222211      11          36899999999999999998865543

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.39  E-value=4.8e-12  Score=111.34  Aligned_cols=99  Identities=23%  Similarity=0.377  Sum_probs=76.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .++.+|||+|||+|.++..+++.+. .+++|+|+++.+++.|+++.+.++  ....+.+..++        .+||+|+++
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~--~~~~~~~~~~~--------~~fD~Vvan  186 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNG--VELNVYLPQGD--------LKADVIVAN  186 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcC--CCceEEEccCC--------CCcCEEEEc
Confidence            3578999999999999988888765 369999999999999999988776  22333333222        279999987


Q ss_pred             chhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ...+.   ...++.++.++|||||++++.....
T Consensus       187 i~~~~---~~~l~~~~~~~LkpgG~lilsgi~~  216 (250)
T PRK00517        187 ILANP---LLELAPDLARLLKPGGRLILSGILE  216 (250)
T ss_pred             CcHHH---HHHHHHHHHHhcCCCcEEEEEECcH
Confidence            54332   3567899999999999999987654

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.38  E-value=4.8e-12  Score=119.87  Aligned_cols=123  Identities=17%  Similarity=0.261  Sum_probs=98.4

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      ....+...+...++.+|||+|||+|..+..+++.. ..++++++|+++.+++.++++++..+.   .++.++.+|+..++
T Consensus       240 ~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~~~  316 (434)
T PRK14901        240 SAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRNLL  316 (434)
T ss_pred             HHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhhcc
Confidence            33445556677778899999999999999998873 346999999999999999999998873   56999999998765


Q ss_pred             ----CCCCccceEEec------chhccCCC----------------HHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          233 ----FASGFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       233 ----~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                          +..++||.|++.      .++.+-++                ...+|.++.++|||||+|+.+|..-.+
T Consensus       317 ~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~  389 (434)
T PRK14901        317 ELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP  389 (434)
T ss_pred             cccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence                445789999973      45665554                346799999999999999988866543

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.38  E-value=6.7e-12  Score=113.67  Aligned_cols=112  Identities=13%  Similarity=0.117  Sum_probs=89.0

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      ....+.+.+...++.+|||||||+|.++..+++... ...|+++|+++.+++.|+++++..+   ..++.++.+|+...+
T Consensus        68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g---~~nV~~i~gD~~~~~  144 (322)
T PRK13943         68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG---IENVIFVCGDGYYGV  144 (322)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCChhhcc
Confidence            334455556666788999999999999999988753 2479999999999999999998876   367999999987665


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ...++||+|++...++++      ...+.+.|+|||++++..
T Consensus       145 ~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        145 PEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             cccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence            455689999998766654      234678999999988855

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.37  E-value=4.7e-12  Score=109.33  Aligned_cols=118  Identities=12%  Similarity=0.221  Sum_probs=95.9

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FA  234 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~  234 (304)
                      ++..+......++|||+|||+|..+..++.+.+..+++|+|+.+.+.+.|+++++.++  ...+++++++|+.++.  ..
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~--l~~ri~v~~~Di~~~~~~~~  112 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP--LEERIQVIEADIKEFLKALV  112 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc--chhceeEehhhHHHhhhccc
Confidence            3455566556889999999999999999999666899999999999999999999988  6799999999998764  33


Q ss_pred             CCccceEEecchhccC------------------CCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          235 SGFVDAVHAGAALHCW------------------PSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~------------------~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ..+||+|+|+--..-.                  .+.+.+++...++||+||.+.++-..
T Consensus       113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~  172 (248)
T COG4123         113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP  172 (248)
T ss_pred             ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence            4579999996332211                  13346789999999999999987743

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.36  E-value=7.6e-12  Score=105.74  Aligned_cols=101  Identities=22%  Similarity=0.420  Sum_probs=83.6

Q ss_pred             CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-C--CCCCccceEEec
Q 021975          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVDAVHAG  244 (304)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~~~fD~V~~~  244 (304)
                      ..+||||||.|.++..++...|+..++|+|+....+..+.+++...+   ..|+.++++|+..+ .  ++++++|.|+..
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~---l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~   95 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG---LKNVRFLRGDARELLRRLFPPGSVDRIYIN   95 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT---TSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc---ccceEEEEccHHHHHhhcccCCchheEEEe
Confidence            38999999999999999999999999999999999999999998886   48999999999872 2  557899999986


Q ss_pred             chhccCCCHH-------------HHHHHHHHhcccCcEEEEEEeC
Q 021975          245 AALHCWPSPS-------------NAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       245 ~vl~h~~d~~-------------~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +     |||.             .+++.+.++|+|||.|.+.|=.
T Consensus        96 F-----PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~  135 (195)
T PF02390_consen   96 F-----PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV  135 (195)
T ss_dssp             S----------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred             C-----CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence            5     6663             6899999999999999998843

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.36  E-value=2.3e-11  Score=108.40  Aligned_cols=119  Identities=21%  Similarity=0.261  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      +...+.+.......++.+|||+|||+|.++..++...+..+++|+|+++.+++.++++++ ..  ...++.++.+|+.. 
T Consensus        94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~--~~~~i~~~~~d~~~-  169 (275)
T PRK09328         94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HG--LGARVEFLQGDWFE-  169 (275)
T ss_pred             HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hC--CCCcEEEEEccccC-
Confidence            344444444444556779999999999999999998877799999999999999999887 22  24689999999855 


Q ss_pred             CCCCCccceEEecchh------c--------cC------------CCHHHHHHHHHHhcccCcEEEEEE
Q 021975          232 PFASGFVDAVHAGAAL------H--------CW------------PSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl------~--------h~------------~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ++..++||+|+++...      +        |-            .....+++++.++|||||++++..
T Consensus       170 ~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        170 PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            2335789999985221      1        11            112457888889999999999854

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.6e-11  Score=108.27  Aligned_cols=132  Identities=16%  Similarity=0.276  Sum_probs=102.4

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      +.-.+.+.+.+....+++|||+|||.|.++..+++..|..+++-+|++..+++.+++++..++.   .+..++..|... 
T Consensus       144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~---~~~~v~~s~~~~-  219 (300)
T COG2813         144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV---ENTEVWASNLYE-  219 (300)
T ss_pred             ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC---CccEEEEecccc-
Confidence            3345677777877767799999999999999999999999999999999999999999998873   333566666644 


Q ss_pred             CCCCCccceEEecchhccCCCH-----HHHHHHHHHhcccCcEEEEEEeCCCCCCcccccccc
Q 021975          232 PFASGFVDAVHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL  289 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~~~~~~  289 (304)
                      +..+ +||+|+++--+|-=.+.     ++++++..+.|++||.|.++.. +..+....+.+.|
T Consensus       220 ~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan-~~l~y~~~L~~~F  280 (300)
T COG2813         220 PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN-RHLPYEKKLKELF  280 (300)
T ss_pred             cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc-CCCChHHHHHHhc
Confidence            3334 99999998776643222     3789999999999999999887 4344444434444

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.35  E-value=1.4e-11  Score=106.13  Aligned_cols=105  Identities=17%  Similarity=0.211  Sum_probs=87.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ...++||||+|.|..+..++..+.  +|++.|.|+.|....++          .+++++..+-  ..-.+.+||+|.|.+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~----------kg~~vl~~~~--w~~~~~~fDvIscLN  159 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSK----------KGFTVLDIDD--WQQTDFKFDVISCLN  159 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHh----------CCCeEEehhh--hhccCCceEEEeehh
Confidence            466899999999999999999877  99999999999777666          3445543332  332356899999999


Q ss_pred             hhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCCCCccc
Q 021975          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL  284 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~  284 (304)
                      +|..-.+|..+|+++++.|+|+|+++++....+.++..+
T Consensus       160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~  198 (265)
T PF05219_consen  160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEF  198 (265)
T ss_pred             hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEc
Confidence            999999999999999999999999999998877666655

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.35  E-value=1.6e-11  Score=111.65  Aligned_cols=111  Identities=26%  Similarity=0.322  Sum_probs=81.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-------ccCCCCeEEEEccCCCCC----CC
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-------TILTSNLALVRADVCRLP----FA  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~~~~~~i~~~~~d~~~lp----~~  234 (304)
                      ++.+|||+|||.|..+.-+...+ -..++|+|++...++.|+++.+...       ........++.+|.....    +.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            67899999999998887777765 3599999999999999999983211       001235678888875421    23


Q ss_pred             --CCccceEEecchhccCCCH----HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 --SGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 --~~~fD~V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                        ...||+|.|.+.||+.-..    ..+|+.+...|||||+|+++++..
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~  189 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS  189 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence              3599999999999997533    358999999999999999999876

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.34  E-value=1.5e-11  Score=107.54  Aligned_cols=107  Identities=21%  Similarity=0.311  Sum_probs=89.5

Q ss_pred             HHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCcc
Q 021975          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (304)
Q Consensus       159 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f  238 (304)
                      .......+..+|+|||+|.|.++..++++.|+.+++.+|. |..++.+++         ..++.++.+|+. -+++.  +
T Consensus        93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~--~  159 (241)
T PF00891_consen   93 LEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV--A  159 (241)
T ss_dssp             HHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS--E
T ss_pred             hccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc--c
Confidence            3344444567899999999999999999999999999997 888888888         278999999998 56665  9


Q ss_pred             ceEEecchhccCCCHH--HHHHHHHHhcccC--cEEEEEEeCCC
Q 021975          239 DAVHAGAALHCWPSPS--NAVAEISRILRSG--GVFVGTTFLRY  278 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~--~~l~~~~r~Lkpg--G~lvi~~~~~~  278 (304)
                      |+|++.++||+++|..  .+|+++++.|+||  |+|+|.++..+
T Consensus       160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~  203 (241)
T PF00891_consen  160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP  203 (241)
T ss_dssp             SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred             cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence            9999999999998775  7899999999999  99999998754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.34  E-value=3e-11  Score=105.15  Aligned_cols=121  Identities=21%  Similarity=0.325  Sum_probs=97.7

Q ss_pred             CcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (304)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (304)
                      .+...+.++...+...+|.+|||.|.|+|.++..|++. ++.++|+.+|+.++.++.|+++++.++  ...++.+...|+
T Consensus        24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g--l~~~v~~~~~Dv  101 (247)
T PF08704_consen   24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG--LDDNVTVHHRDV  101 (247)
T ss_dssp             --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT--CCTTEEEEES-G
T ss_pred             eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC--CCCCceeEecce
Confidence            34456678888899999999999999999999999986 788899999999999999999999998  567899999999


Q ss_pred             CCCCCC---CCccceEEecchhccCCCHHHHHHHHHHhc-ccCcEEEEEEeCC
Q 021975          229 CRLPFA---SGFVDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTTFLR  277 (304)
Q Consensus       229 ~~lp~~---~~~fD~V~~~~vl~h~~d~~~~l~~~~r~L-kpgG~lvi~~~~~  277 (304)
                      ....|.   +..+|.|+..     +++|..++..+.+.| |+||++....++-
T Consensus       102 ~~~g~~~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~i  149 (247)
T PF08704_consen  102 CEEGFDEELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCI  149 (247)
T ss_dssp             GCG--STT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred             ecccccccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence            654442   3679999984     589999999999999 9999999888764

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.32  E-value=2.4e-11  Score=104.31  Aligned_cols=119  Identities=19%  Similarity=0.301  Sum_probs=87.9

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC---------ccCCCCeEEEE
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVR  225 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~~~~i~~~~  225 (304)
                      .+++.. +...++.+||..|||.|..+..|++.|.  +|+|+|+|+.+++.+.+......         .....+|.+++
T Consensus        27 ~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~  103 (218)
T PF05724_consen   27 VEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC  103 (218)
T ss_dssp             HHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred             HHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence            333333 4555677999999999999999999997  99999999999999854322100         00234689999


Q ss_pred             ccCCCCCCCC-CccceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          226 ADVCRLPFAS-GFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       226 ~d~~~lp~~~-~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +|+..++... ++||+|+-...|.-++  ......+.+.++|||||.+++.+..
T Consensus       104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~  157 (218)
T PF05724_consen  104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE  157 (218)
T ss_dssp             S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred             cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence            9999976433 4799999998888886  3357899999999999995554443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.32  E-value=1.7e-11  Score=115.75  Aligned_cols=126  Identities=16%  Similarity=0.213  Sum_probs=96.7

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-C
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F  233 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~  233 (304)
                      ..+...+...++.+|||+|||+|..+.+++... ...+|+++|+++.+++.++++++..+.   .++.++.+|...++ +
T Consensus       227 ~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v~~~~~Da~~l~~~  303 (431)
T PRK14903        227 QIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSIEIKIADAERLTEY  303 (431)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhhhhhh
Confidence            344445666778899999999999999888863 356999999999999999999998873   46899999998765 4


Q ss_pred             CCCccceEEec------chhccCCC----------------HHHHHHHHHHhcccCcEEEEEEeCCCCCCccc
Q 021975          234 ASGFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSL  284 (304)
Q Consensus       234 ~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~  284 (304)
                      .+++||.|++.      +++.+-++                ..++|.++.+.|||||+++.+|..-....+..
T Consensus       304 ~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~  376 (431)
T PRK14903        304 VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTE  376 (431)
T ss_pred             hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHH
Confidence            46789999963      23332221                13578999999999999999998764444433

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.32  E-value=1.9e-11  Score=108.36  Aligned_cols=117  Identities=18%  Similarity=0.140  Sum_probs=91.4

Q ss_pred             HhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCcc
Q 021975          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (304)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f  238 (304)
                      ..+...++.+|||+|||+|..+..++... ..+.|+++|+++.+++.++++++..+.   .++.++..|...++...+.|
T Consensus        65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~~~f  141 (264)
T TIGR00446        65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV---LNVAVTNFDGRVFGAAVPKF  141 (264)
T ss_pred             HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEecCCHHHhhhhccCC
Confidence            34556678899999999999999988763 235899999999999999999998872   57899999987766555679


Q ss_pred             ceEEec------chhccCCC----------------HHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          239 DAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       239 D~V~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      |.|++.      .++.+-++                ...+|+++.+.|||||+|+.+|..-..
T Consensus       142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~  204 (264)
T TIGR00446       142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP  204 (264)
T ss_pred             CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            999963      23332221                135899999999999999998876543

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.31  E-value=4.7e-11  Score=110.57  Aligned_cols=115  Identities=15%  Similarity=0.126  Sum_probs=85.0

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      ..+.+...+.  ++.+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++.+..+    .++.++++|+.+..+
T Consensus       241 LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g----~rV~fi~gDl~e~~l  314 (423)
T PRK14966        241 LVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG----ARVEFAHGSWFDTDM  314 (423)
T ss_pred             HHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEcchhcccc
Confidence            3344443333  3569999999999999999987767799999999999999999998765    479999999865432


Q ss_pred             -CCCccceEEecchhc-----cCC------CH--------------HHHHHHHHHhcccCcEEEEEE
Q 021975          234 -ASGFVDAVHAGAALH-----CWP------SP--------------SNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       234 -~~~~fD~V~~~~vl~-----h~~------d~--------------~~~l~~~~r~LkpgG~lvi~~  274 (304)
                       ..++||+|+++--..     +..      +|              ..+++++.+.|+|||.+++..
T Consensus       315 ~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi  381 (423)
T PRK14966        315 PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH  381 (423)
T ss_pred             ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence             245799999954210     000      11              245677778999999987654

>PRK04457 spermidine synthase; Provisional

Probab=99.31  E-value=2.1e-11  Score=107.90  Aligned_cols=111  Identities=11%  Similarity=0.137  Sum_probs=86.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-CCCCCccceEEe
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHA  243 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (304)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.|++.+...+  ..++++++.+|+.+. .-..++||+|++
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~--~~~rv~v~~~Da~~~l~~~~~~yD~I~~  142 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE--NGERFEVIEADGAEYIAVHRHSTDVILV  142 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC--CCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence            34678999999999999999998888899999999999999999876543  246899999998542 222358999997


Q ss_pred             cchh-ccCC---CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          244 GAAL-HCWP---SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       244 ~~vl-~h~~---d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ...- ...+   ....+++++.+.|+|||++++..+..
T Consensus       143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~  180 (262)
T PRK04457        143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR  180 (262)
T ss_pred             eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence            5311 1111   12589999999999999999976654

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.31  E-value=1.8e-11  Score=103.05  Aligned_cols=108  Identities=20%  Similarity=0.273  Sum_probs=79.4

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (304)
                      .+....+....++.+|||+|||+|.++..+++.. +..+++|+|+++.+     .         ..++.++++|+.+.+ 
T Consensus        21 ~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~---------~~~i~~~~~d~~~~~~   86 (188)
T TIGR00438        21 LQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P---------IENVDFIRGDFTDEEV   86 (188)
T ss_pred             HHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c---------CCCceEEEeeCCChhH
Confidence            3444444455678899999999999999888774 44689999999854     1         146788888987642 


Q ss_pred             -------CCCCccceEEecch--------hccCC---CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          233 -------FASGFVDAVHAGAA--------LHCWP---SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       233 -------~~~~~fD~V~~~~v--------l~h~~---d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                             ++.++||+|++...        ++|..   +...+++++.++|+|||++++..+.
T Consensus        87 ~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~  148 (188)
T TIGR00438        87 LNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ  148 (188)
T ss_pred             HHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence                   34678999998543        22211   2357899999999999999997644

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.30  E-value=1.2e-11  Score=104.65  Aligned_cols=104  Identities=24%  Similarity=0.264  Sum_probs=79.6

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhc
Q 021975          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH  248 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~  248 (304)
                      .++|+|||+|..++-++....  +|+|+|+|+.|++.|++......  ..........+..++--.++++|+|++...+|
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y--~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H  111 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTY--CHTPSTMSSDEMVDLLGGEESVDLITAAQAVH  111 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCccc--ccCCccccccccccccCCCcceeeehhhhhHH
Confidence            899999999988888888876  99999999999999988433221  12223333334444433488999999999887


Q ss_pred             cCCCHHHHHHHHHHhcccCc-EEEEEEeCC
Q 021975          249 CWPSPSNAVAEISRILRSGG-VFVGTTFLR  277 (304)
Q Consensus       249 h~~d~~~~l~~~~r~LkpgG-~lvi~~~~~  277 (304)
                      .+ |..++.+++.|+||+.| ++.+..+..
T Consensus       112 WF-dle~fy~~~~rvLRk~Gg~iavW~Y~d  140 (261)
T KOG3010|consen  112 WF-DLERFYKEAYRVLRKDGGLIAVWNYND  140 (261)
T ss_pred             hh-chHHHHHHHHHHcCCCCCEEEEEEccC
Confidence            65 77889999999998866 788887773

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.29  E-value=3.8e-11  Score=114.14  Aligned_cols=121  Identities=16%  Similarity=0.162  Sum_probs=92.8

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      .....+...++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.++++++..+.   .++.++++|+..++ ++
T Consensus       241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~-~~  316 (445)
T PRK14904        241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS-PE  316 (445)
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc-cC
Confidence            34445556678899999999999988888753 245999999999999999999988772   47899999998765 45


Q ss_pred             CccceEEec------chhccCC------C----------HHHHHHHHHHhcccCcEEEEEEeCCCCCC
Q 021975          236 GFVDAVHAG------AALHCWP------S----------PSNAVAEISRILRSGGVFVGTTFLRYTSS  281 (304)
Q Consensus       236 ~~fD~V~~~------~vl~h~~------d----------~~~~l~~~~r~LkpgG~lvi~~~~~~~~~  281 (304)
                      ++||+|++.      .++.+-+      +          ...+|+++.+.|||||+++..|..-....
T Consensus       317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~E  384 (445)
T PRK14904        317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEE  384 (445)
T ss_pred             CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence            789999962      2222111      1          23589999999999999999997664333

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.29  E-value=1.2e-11  Score=103.20  Aligned_cols=124  Identities=19%  Similarity=0.339  Sum_probs=80.5

Q ss_pred             chhhHHHHHhHHHhhhcCCCCCcHHHHHHHHHhhccc-CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 021975          129 PFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY  207 (304)
Q Consensus       129 ~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~  207 (304)
                      +-.-..|+.+++++...+...    -.+.+.+++... +...|.|+|||.+.++..+... .  +|+.+|+-.       
T Consensus        38 P~~F~~YH~Gfr~Qv~~WP~n----Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~--~V~SfDLva-------  103 (219)
T PF05148_consen   38 PELFDIYHEGFRQQVKKWPVN----PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-H--KVHSFDLVA-------  103 (219)
T ss_dssp             HHHHHHHHHHHHHHHCTSSS-----HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS--------
T ss_pred             HHHHHHHHHHHHHHHhcCCCC----cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-c--eEEEeeccC-------
Confidence            333456888888877654322    334455555543 3568999999999998766533 2  899999854       


Q ss_pred             HHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                                 .+-.++.+|+..+|++++++|++++...|-- .|...++.|..|+|||||.|.|++..+.
T Consensus       104 -----------~n~~Vtacdia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SR  162 (219)
T PF05148_consen  104 -----------PNPRVTACDIANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSR  162 (219)
T ss_dssp             -----------SSTTEEES-TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred             -----------CCCCEEEecCccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEeccc
Confidence                       3445788999999999999999999877665 4778899999999999999999998764

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PTZ00146 fibrillarin; Provisional

Probab=99.28  E-value=9.9e-11  Score=103.65  Aligned_cols=106  Identities=19%  Similarity=0.200  Sum_probs=78.4

Q ss_pred             cccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC---CCCCCcc
Q 021975          163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFASGFV  238 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~~~~f  238 (304)
                      ...++.+|||+|||+|.++..+++. ++...|+++|+++.+.+...+..+.     ..++.++.+|+...   .....+|
T Consensus       129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~v  203 (293)
T PTZ00146        129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPMV  203 (293)
T ss_pred             ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCCC
Confidence            3457889999999999999999988 4456899999998766544443332     15788999998541   2224579


Q ss_pred             ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      |+|++...  ...+...++.++.++|||||.|++...
T Consensus       204 DvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ik  238 (293)
T PTZ00146        204 DVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIK  238 (293)
T ss_pred             CEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEe
Confidence            99999764  222334566799999999999999543

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.28  E-value=2.7e-11  Score=104.21  Aligned_cols=107  Identities=21%  Similarity=0.310  Sum_probs=90.9

Q ss_pred             hhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCc
Q 021975          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF  237 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~  237 (304)
                      .+.......+||||||.|.++..++...|+..++|||+....+..|.+++.+.++   .|+.+++.|+..+-   +++++
T Consensus        43 ~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l---~Nlri~~~DA~~~l~~~~~~~s  119 (227)
T COG0220          43 LFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL---KNLRLLCGDAVEVLDYLIPDGS  119 (227)
T ss_pred             HhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC---CcEEEEcCCHHHHHHhcCCCCC
Confidence            3444334689999999999999999999999999999999999999999999872   39999999996632   45669


Q ss_pred             cceEEecchhccCCCHH-------------HHHHHHHHhcccCcEEEEEEe
Q 021975          238 VDAVHAGAALHCWPSPS-------------NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~~-------------~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .|-|..++     |||.             .+++.+.++|||||.|.+.|=
T Consensus       120 l~~I~i~F-----PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD  165 (227)
T COG0220         120 LDKIYINF-----PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD  165 (227)
T ss_pred             eeEEEEEC-----CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence            99999865     6662             689999999999999999884

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.28  E-value=1.6e-12  Score=108.89  Aligned_cols=122  Identities=20%  Similarity=0.242  Sum_probs=94.8

Q ss_pred             cCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEE
Q 021975          145 RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV  224 (304)
Q Consensus       145 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~  224 (304)
                      +-+|..+..+.++|... ...+-.++||+|||||..+..+...-.  .++|+|+|.+|++.|.++-        .--...
T Consensus       105 kL~Y~vP~~l~emI~~~-~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg--------~YD~L~  173 (287)
T COG4976         105 KLGYSVPELLAEMIGKA-DLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKG--------LYDTLY  173 (287)
T ss_pred             HhcCccHHHHHHHHHhc-cCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhcc--------chHHHH
Confidence            34566666666666543 333467899999999999999998876  9999999999999998842        112334


Q ss_pred             EccCCCC-C-CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          225 RADVCRL-P-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       225 ~~d~~~l-p-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++++..+ + ..+..||+|++..|+-++.+.+.++..+...|+|||.|.++.-..
T Consensus       174 ~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l  228 (287)
T COG4976         174 VAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETL  228 (287)
T ss_pred             HHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEeccc
Confidence            4444321 1 346789999999999999999999999999999999999987554

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.28  E-value=6.4e-11  Score=113.98  Aligned_cols=105  Identities=12%  Similarity=0.137  Sum_probs=82.3

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc-
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA-  245 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~-  245 (304)
                      +.+|||+|||+|.++..++...+..+++++|+|+.+++.|+++++..+  ...++.++.+|+.. +++.++||+|+++- 
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~--l~~~v~~~~~D~~~-~~~~~~fDlIvsNPP  215 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE--VTDRIQIIHSNWFE-NIEKQKFDFIVSNPP  215 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC--Cccceeeeecchhh-hCcCCCccEEEECCC
Confidence            468999999999999999887777799999999999999999998776  34679999999754 23456899999842 


Q ss_pred             -------------hhccCCC------------HHHHHHHHHHhcccCcEEEEEE
Q 021975          246 -------------ALHCWPS------------PSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       246 -------------vl~h~~d------------~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                                   ++.|-+.            ...+++++.++|+|||.+++..
T Consensus       216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi  269 (506)
T PRK01544        216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI  269 (506)
T ss_pred             CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence                         1222211            1246778889999999998753

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=4.8e-11  Score=105.72  Aligned_cols=116  Identities=22%  Similarity=0.369  Sum_probs=86.9

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      .--.+.+.+++.  ++.+|||+|||+|-++.+.++.|. .+++|+|++|-+++.++++...++  ....+.....+....
T Consensus       150 ~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~--v~~~~~~~~~~~~~~  224 (300)
T COG2264         150 SLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNG--VELLVQAKGFLLLEV  224 (300)
T ss_pred             HHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcC--Cchhhhcccccchhh
Confidence            334556666655  588999999999999999999985 579999999999999999999887  222122222222222


Q ss_pred             CCCCCccceEEecchhccCCCH-HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          232 PFASGFVDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~-~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      + ..+.||+|+++= |   .++ ..+..++.+.|||||+++++-...
T Consensus       225 ~-~~~~~DvIVANI-L---A~vl~~La~~~~~~lkpgg~lIlSGIl~  266 (300)
T COG2264         225 P-ENGPFDVIVANI-L---AEVLVELAPDIKRLLKPGGRLILSGILE  266 (300)
T ss_pred             c-ccCcccEEEehh-h---HHHHHHHHHHHHHHcCCCceEEEEeehH
Confidence            2 236999999974 2   233 367889999999999999998665

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.27  E-value=4.7e-11  Score=113.55  Aligned_cols=118  Identities=20%  Similarity=0.254  Sum_probs=92.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (304)
                      ..+...+...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.++++++..+.   .++.++++|+..++  
T Consensus       240 ~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~  316 (444)
T PRK14902        240 MLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVHEK  316 (444)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCcccccch
Confidence            345556666678899999999999999998863 456999999999999999999988873   45999999997753  


Q ss_pred             CCCCccceEEecc------hhccCCCH----------------HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 FASGFVDAVHAGA------ALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 ~~~~~fD~V~~~~------vl~h~~d~----------------~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++ ++||+|++..      ++.+.++.                ..+|+++.++|||||+|+.+|..-
T Consensus       317 ~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        317 FA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             hc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            33 6899999742      22222211                357999999999999999877654

>PHA03411 putative methyltransferase; Provisional

Probab=99.26  E-value=8.8e-11  Score=102.93  Aligned_cols=116  Identities=13%  Similarity=0.140  Sum_probs=87.6

Q ss_pred             CCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc
Q 021975          147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (304)
Q Consensus       147 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (304)
                      .|.++..+...+.  ......++|||+|||+|.++..++...+..+++|+|+++.+++.+++++        .++.++++
T Consensus        47 ~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~~  116 (279)
T PHA03411         47 AFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--------PEAEWITS  116 (279)
T ss_pred             eEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------cCCEEEEC
Confidence            3566666653332  2233457999999999999888877654469999999999999998852        46889999


Q ss_pred             cCCCCCCCCCccceEEecchhccCCCH--------------------HHHHHHHHHhcccCcEEEEE
Q 021975          227 DVCRLPFASGFVDAVHAGAALHCWPSP--------------------SNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       227 d~~~lp~~~~~fD~V~~~~vl~h~~d~--------------------~~~l~~~~r~LkpgG~lvi~  273 (304)
                      |+..+.. +++||+|+++-.+.|.+..                    ..+++....+|+|+|.+++.
T Consensus       117 D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        117 DVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             chhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            9987653 5689999998887775321                    34667778899999977766

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.26  E-value=3.3e-11  Score=105.88  Aligned_cols=111  Identities=25%  Similarity=0.372  Sum_probs=88.8

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc---CCCCeEEEEccCCC------CCCCCC
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCR------LPFASG  236 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~~~~i~~~~~d~~~------lp~~~~  236 (304)
                      ++..++|+|||.|..+..+-+.+ -..++|+||.+..++.|+++.+.....   -...+.|+.+|...      +++++.
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             cccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            47789999999999888888776 469999999999999999988654310   01236889998754      345566


Q ss_pred             ccceEEecchhccCC----CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          237 FVDAVHAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~----d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +||+|.|-+++|+.-    ....+|+++.+.|||||+++.+.+.+
T Consensus       196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds  240 (389)
T KOG1975|consen  196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS  240 (389)
T ss_pred             CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence            699999999998853    33468999999999999999999876

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.26  E-value=6.3e-11  Score=103.11  Aligned_cols=117  Identities=13%  Similarity=0.161  Sum_probs=91.5

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ...+++.......++.+|||+|||+|..+..++.. .+.++++++|+++.+++.|+++++..+  ...+++++.+|+.+.
T Consensus        55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l~~~i~~~~gda~~~  132 (234)
T PLN02781         55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--VDHKINFIQSDALSA  132 (234)
T ss_pred             HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEccHHHH
Confidence            33445555555566789999999999988888876 346799999999999999999999988  457899999999653


Q ss_pred             -C-----CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          232 -P-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       232 -p-----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                       +     .+.++||+|+....-   +....+++.+.++|||||++++..
T Consensus       133 L~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        133 LDQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             HHHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEc
Confidence             1     124689999986421   233578899999999999888754

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.25  E-value=4.5e-11  Score=106.76  Aligned_cols=111  Identities=23%  Similarity=0.379  Sum_probs=82.8

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      .+.+.++.  .++.+|||+|||+|-++...++.|. .+|+|+|+++.+++.|+++.+.++  ...++.+.  ...+.  .
T Consensus       152 l~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~--~~~~~~v~--~~~~~--~  222 (295)
T PF06325_consen  152 LELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNG--VEDRIEVS--LSEDL--V  222 (295)
T ss_dssp             HHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT---TTCEEES--CTSCT--C
T ss_pred             HHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcC--CCeeEEEE--Eeccc--c
Confidence            34444443  3478999999999999999999884 589999999999999999999998  44555442  22232  3


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .+.||+|+++-..+-   ...++..+.++|+|||+|+++-...
T Consensus       223 ~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~  262 (295)
T PF06325_consen  223 EGKFDLVVANILADV---LLELAPDIASLLKPGGYLILSGILE  262 (295)
T ss_dssp             CS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred             cccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccH
Confidence            589999999753321   2456788899999999999998765

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.24  E-value=2e-10  Score=101.01  Aligned_cols=103  Identities=22%  Similarity=0.236  Sum_probs=78.5

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-CC-CCCccceEEec
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF-ASGFVDAVHAG  244 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~-~~~~fD~V~~~  244 (304)
                      ..+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++++.++      +.++++|+.+. +- ..++||+|+++
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~------~~~~~~D~~~~l~~~~~~~fDlVv~N  160 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG------GTVHEGDLYDALPTALRGRVDILAAN  160 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC------CEEEEeechhhcchhcCCCEeEEEEC
Confidence            458999999999999999887666699999999999999999987654      47888998652 21 13579999986


Q ss_pred             chh------c--------cCC--------C----HHHHHHHHHHhcccCcEEEEEEe
Q 021975          245 AAL------H--------CWP--------S----PSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       245 ~vl------~--------h~~--------d----~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      --.      .        |-+        |    ...+++.+.++|||||++++...
T Consensus       161 PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~  217 (251)
T TIGR03704       161 APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS  217 (251)
T ss_pred             CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            321      1        110        1    13567778899999999998764

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.24  E-value=1.6e-10  Score=95.63  Aligned_cols=108  Identities=9%  Similarity=0.143  Sum_probs=81.8

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (304)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +++++|+++.+++.+++++..     ..+++++.+|+.++++++.
T Consensus         4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~~   76 (169)
T smart00650        4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPKL   76 (169)
T ss_pred             HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCcccc
Confidence            445555556678999999999999999998854  999999999999999988753     2579999999999888777


Q ss_pred             ccceEEecchhccCCCHHHHHHHHHHh--cccCcEEEEEE
Q 021975          237 FVDAVHAGAALHCWPSPSNAVAEISRI--LRSGGVFVGTT  274 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~--LkpgG~lvi~~  274 (304)
                      .||.|+++--++ +.  ...+..+...  +.++|++++..
T Consensus        77 ~~d~vi~n~Py~-~~--~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       77 QPYKVVGNLPYN-IS--TPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             CCCEEEECCCcc-cH--HHHHHHHHhcCCCcceEEEEEEH
Confidence            799998875443 22  3445555443  34677776644

>PRK00811 spermidine synthase; Provisional

Probab=99.22  E-value=1.1e-10  Score=104.53  Aligned_cols=109  Identities=15%  Similarity=0.242  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC--ccCCCCeEEEEccCCCC-CCCCCccceEE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN--TILTSNLALVRADVCRL-PFASGFVDAVH  242 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--~~~~~~i~~~~~d~~~l-p~~~~~fD~V~  242 (304)
                      ++.+||+||||+|..+..+.+.....+|+++|+++.+++.|++.+....  ....++++++.+|+... ...+++||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            4679999999999999999887445699999999999999999886432  00246899999998653 23467899999


Q ss_pred             ecchhccCCC----HHHHHHHHHHhcccCcEEEEEE
Q 021975          243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       243 ~~~vl~h~~d----~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +...-.+.+.    ...+++.+.+.|+|||++++..
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            8643222221    2567899999999999988753

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.22  E-value=6.3e-11  Score=100.33  Aligned_cols=106  Identities=22%  Similarity=0.284  Sum_probs=87.1

Q ss_pred             eEEEEcCCccHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC----CCCCCCccceEE
Q 021975          169 LLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVDAVH  242 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~fD~V~  242 (304)
                      +|||||||.|....-+.+..++  ..+++.|.|+.+++..+++.+...    .++.....|+..    .+...+++|+|+
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e----~~~~afv~Dlt~~~~~~~~~~~svD~it  149 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE----SRVEAFVWDLTSPSLKEPPEEGSVDIIT  149 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch----hhhcccceeccchhccCCCCcCccceEE
Confidence            8999999999999888887665  789999999999999988665432    445555555532    346688999999


Q ss_pred             ecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          243 AGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       243 ~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      +.+||..++  .-..++.++.++|||||.|++.+++++
T Consensus       150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~  187 (264)
T KOG2361|consen  150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY  187 (264)
T ss_pred             EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence            999998885  335789999999999999999999985

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=4.8e-10  Score=99.97  Aligned_cols=102  Identities=25%  Similarity=0.383  Sum_probs=80.9

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch--
Q 021975          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA--  246 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v--  246 (304)
                      +|||+|||+|..+..++...+..+|+|+|+|+.+++.|+++.+.++  . .++.++.+|... +. .++||+|+++--  
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~--l-~~~~~~~~dlf~-~~-~~~fDlIVsNPPYi  187 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG--L-VRVLVVQSDLFE-PL-RGKFDLIVSNPPYI  187 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcC--C-ccEEEEeeeccc-cc-CCceeEEEeCCCCC
Confidence            7999999999999999999988899999999999999999999987  3 667777777655 23 348999999621  


Q ss_pred             ---hccC------CCHH--------------HHHHHHHHhcccCcEEEEEEe
Q 021975          247 ---LHCW------PSPS--------------NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       247 ---l~h~------~d~~--------------~~l~~~~r~LkpgG~lvi~~~  275 (304)
                         ..+.      .+|.              .++.++.+.|+|||.+++-.-
T Consensus       188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g  239 (280)
T COG2890         188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG  239 (280)
T ss_pred             CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence               1111      1231              467889999999998877653

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=99.18  E-value=2.1e-10  Score=97.89  Aligned_cols=123  Identities=19%  Similarity=0.275  Sum_probs=92.2

Q ss_pred             chhhHHHHHhHHHhhhcCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021975          129 PFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (304)
Q Consensus       129 ~~~s~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~  208 (304)
                      +..-..|+.+++.+...+..-..+.+++.|...   .....|.|+|||.+.+..   ....  .|+.+|+-.        
T Consensus       146 p~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r---~~~~vIaD~GCGEakiA~---~~~~--kV~SfDL~a--------  209 (325)
T KOG3045|consen  146 PTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRR---PKNIVIADFGCGEAKIAS---SERH--KVHSFDLVA--------  209 (325)
T ss_pred             cHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhC---cCceEEEecccchhhhhh---cccc--ceeeeeeec--------
Confidence            344456888888777654433333333333332   345789999999998765   2233  899999843        


Q ss_pred             HHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          209 FIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                                .+-+++.+|+.++|+++++.|++++..+|-- .|...++.|+.|+||+||.++|++..+.
T Consensus       210 ----------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~SR  268 (325)
T KOG3045|consen  210 ----------VNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKSR  268 (325)
T ss_pred             ----------CCCceeeccccCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhhh
Confidence                      5667889999999999999999998776553 5788899999999999999999998764

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.14  E-value=3.7e-10  Score=107.35  Aligned_cols=115  Identities=18%  Similarity=0.315  Sum_probs=86.8

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-  230 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-  230 (304)
                      +.+.+.+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++++.++.   .++.++++|+.+ 
T Consensus       283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~~---~~v~~~~~d~~~~  357 (443)
T PRK13168        283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNGL---DNVTFYHANLEED  357 (443)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEeChHHh
Confidence            33455566666656678999999999999999998875  999999999999999999988762   579999999864 


Q ss_pred             ---CCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          231 ---LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       231 ---lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                         .++.+++||+|++.---.   .....++.+.+ ++|+++++++..
T Consensus       358 l~~~~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSCn  401 (443)
T PRK13168        358 FTDQPWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSCN  401 (443)
T ss_pred             hhhhhhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEeC
Confidence               234456899999853211   12345555554 689998888763

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.13  E-value=6.1e-10  Score=94.83  Aligned_cols=121  Identities=13%  Similarity=0.158  Sum_probs=95.4

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEE-ccCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVC  229 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~  229 (304)
                      .+...++.........++|||||.+.|+.+..++...+ +.+++.+|+++++.+.|++++++.+  ...++..+. +|..
T Consensus        45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag--~~~~i~~~~~gdal  122 (219)
T COG4122          45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG--VDDRIELLLGGDAL  122 (219)
T ss_pred             hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC--CcceEEEEecCcHH
Confidence            34445555555556778999999999999999999876 7899999999999999999999999  566688888 4664


Q ss_pred             CC-C-CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          230 RL-P-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       230 ~l-p-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +. . ...++||+|+....=   .+-..+++.+.++|+|||++++-....
T Consensus       123 ~~l~~~~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNvl~  169 (219)
T COG4122         123 DVLSRLLDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNVLF  169 (219)
T ss_pred             HHHHhccCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence            32 1 346899999986521   133578999999999999888766544

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.12  E-value=4.6e-10  Score=104.68  Aligned_cols=111  Identities=17%  Similarity=0.195  Sum_probs=83.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--C--CCCccceE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F--ASGFVDAV  241 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~--~~~~fD~V  241 (304)
                      ++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|+++++.+++ ...++.++++|+.+..  +  ..++||+|
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl-~~~~v~~i~~D~~~~l~~~~~~~~~fDlV  297 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKL-DLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC-CCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence            47899999999999988766554 45999999999999999999998873 1147899999986642  1  24689999


Q ss_pred             Eecchhcc---------CCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          242 HAGAALHC---------WPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       242 ~~~~vl~h---------~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++.--...         ..+...++....++|+|||.|+..+....
T Consensus       298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~  343 (396)
T PRK15128        298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL  343 (396)
T ss_pred             EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc
Confidence            98632110         01223455677899999999998876553

>PLN02476 O-methyltransferase

Probab=99.10  E-value=1.3e-09  Score=96.36  Aligned_cols=119  Identities=13%  Similarity=0.119  Sum_probs=92.5

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ...+++.......+.++|||||+++|+.+..++.. .++++++.+|.+++..+.|+++++..|  ...+++++.+|+.+.
T Consensus       105 ~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l~~~I~li~GdA~e~  182 (278)
T PLN02476        105 DQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--VSHKVNVKHGLAAES  182 (278)
T ss_pred             HHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHH
Confidence            33444555555566789999999999999999886 335689999999999999999999998  567899999998552


Q ss_pred             -C-C----CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          232 -P-F----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       232 -p-~----~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                       + +    ..++||+|+...-=   .+...+++.+.++|+|||++++-...
T Consensus       183 L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNvL  230 (278)
T PLN02476        183 LKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNVL  230 (278)
T ss_pred             HHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecCc
Confidence             2 1    13689999996531   23457889999999999998875443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.10  E-value=5.6e-10  Score=111.65  Aligned_cols=110  Identities=17%  Similarity=0.182  Sum_probs=85.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CCCCccceEEec
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG  244 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~  244 (304)
                      ++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|+++++.+++ ...++.++++|+.+.. -..++||+|++.
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~-~~~~v~~i~~D~~~~l~~~~~~fDlIilD  615 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGL-SGRQHRLIQADCLAWLKEAREQFDLIFID  615 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCC-CccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence            468999999999999999998763 4799999999999999999998873 1147999999986521 114689999985


Q ss_pred             c-----------hhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          245 A-----------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       245 ~-----------vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      -           +.....+...++..+.++|+|||++++.+...
T Consensus       616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~  659 (702)
T PRK11783        616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR  659 (702)
T ss_pred             CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            2           11112234567888999999999998877554

>PHA03412 putative methyltransferase; Provisional

Probab=99.10  E-value=1.2e-09  Score=93.72  Aligned_cols=113  Identities=15%  Similarity=0.188  Sum_probs=82.5

Q ss_pred             CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeE
Q 021975          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA  222 (304)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~  222 (304)
                      ..|.++..+.+.+...  ...+.+|||+|||+|.++..+++..   +..+++++|+++.+++.|+++.        .++.
T Consensus        31 GqFfTP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------~~~~  100 (241)
T PHA03412         31 GAFFTPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------PEAT  100 (241)
T ss_pred             CccCCCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------cCCE
Confidence            4567777776555422  2236799999999999999888752   2458999999999999999853        4588


Q ss_pred             EEEccCCCCCCCCCccceEEecchhccC--CC----------HHHHHHHHHHhcccCcE
Q 021975          223 LVRADVCRLPFASGFVDAVHAGAALHCW--PS----------PSNAVAEISRILRSGGV  269 (304)
Q Consensus       223 ~~~~d~~~lp~~~~~fD~V~~~~vl~h~--~d----------~~~~l~~~~r~LkpgG~  269 (304)
                      ++.+|+...++ +++||+|+++--..-.  .+          ...+++.+.+++++|+.
T Consensus       101 ~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        101 WINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             EEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            99999987665 5689999996433211  11          23578888887777664

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.09  E-value=1e-09  Score=93.28  Aligned_cols=117  Identities=14%  Similarity=0.201  Sum_probs=90.6

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-C
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P  232 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p  232 (304)
                      .+++..+....+..+|||||+++|+.+..+++..+ +++++.+|+++...+.|++.++..+  ...+++++.+|+.+. +
T Consensus        34 g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~~~~I~~~~gda~~~l~  111 (205)
T PF01596_consen   34 GQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--LDDRIEVIEGDALEVLP  111 (205)
T ss_dssp             HHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--GGGGEEEEES-HHHHHH
T ss_pred             HHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--CCCcEEEEEeccHhhHH
Confidence            34444444455678999999999999999998744 6899999999999999999999988  467899999998542 1


Q ss_pred             -----CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          233 -----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       233 -----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                           -..++||+|+....=   .+....++.+.++|+|||++++-...
T Consensus       112 ~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l  157 (205)
T PF01596_consen  112 ELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNVL  157 (205)
T ss_dssp             HHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred             HHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEcccc
Confidence                 113589999997632   23457788999999999988876544

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00417 speE spermidine synthase

Probab=99.09  E-value=1.4e-09  Score=96.71  Aligned_cols=109  Identities=14%  Similarity=0.193  Sum_probs=81.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-ccCCCCeEEEEccCCCC-CCCCCccceEEe
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVHA  243 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (304)
                      .+.+||+||||+|..+..+.+..+..+++++|+++.+++.+++.+...+ ....++++++.+|.... ....++||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            3459999999999999988887645689999999999999999875432 11235788888887442 222468999998


Q ss_pred             cchhccCCC----HHHHHHHHHHhcccCcEEEEEE
Q 021975          244 GAALHCWPS----PSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       244 ~~vl~h~~d----~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ......-+.    ..++++.+.+.|+|||++++..
T Consensus       152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            654221111    3578899999999999999864

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK01581 speE spermidine synthase; Validated

Probab=99.09  E-value=5.8e-10  Score=101.39  Aligned_cols=110  Identities=18%  Similarity=0.190  Sum_probs=80.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH--Hh--cCccCCCCeEEEEccCCC-CCCCCCccc
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI--KQ--DNTILTSNLALVRADVCR-LPFASGFVD  239 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~--~~--~~~~~~~~i~~~~~d~~~-lp~~~~~fD  239 (304)
                      ....+||+||||+|..+..+.+..+..+++++|+++.+++.|++..  ..  .+....++++++.+|+.+ +....+.||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            3457999999999999999998765579999999999999999721  10  010024789999999876 333456899


Q ss_pred             eEEecchh--cc-CC--CHHHHHHHHHHhcccCcEEEEEE
Q 021975          240 AVHAGAAL--HC-WP--SPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       240 ~V~~~~vl--~h-~~--d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +|++...-  .+ ..  .-..+++.+.+.|+|||++++..
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs  268 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS  268 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            99997421  00 00  11468999999999999988764

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.08  E-value=8.2e-10  Score=100.44  Aligned_cols=115  Identities=11%  Similarity=0.176  Sum_probs=83.4

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      .+.+.+.+++...++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.|+++.+.++.   .+++++++|+.++.
T Consensus       160 ~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~l---~~v~~~~~D~~~~~  234 (315)
T PRK03522        160 QLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELGL---TNVQFQALDSTQFA  234 (315)
T ss_pred             HHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEcCHHHHH
Confidence            3444455555544568999999999999999999765  999999999999999999988872   57999999997653


Q ss_pred             C-CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 F-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ~-~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      . ..+.||+|++.---.   .....+.++...++|+++++++..
T Consensus       235 ~~~~~~~D~Vv~dPPr~---G~~~~~~~~l~~~~~~~ivyvsc~  275 (315)
T PRK03522        235 TAQGEVPDLVLVNPPRR---GIGKELCDYLSQMAPRFILYSSCN  275 (315)
T ss_pred             HhcCCCCeEEEECCCCC---CccHHHHHHHHHcCCCeEEEEECC
Confidence            2 235799999863210   011223334445778887777664

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.07  E-value=2e-09  Score=90.38  Aligned_cols=121  Identities=19%  Similarity=0.287  Sum_probs=92.1

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCe-EEEEccCCCC-
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRL-  231 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i-~~~~~d~~~l-  231 (304)
                      +.+.+.+++... +.+|||||+|+|....++++..|..+..-.|+++......+..+...++   .++ .-+..|+... 
T Consensus        14 Il~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~---~Nv~~P~~lDv~~~~   89 (204)
T PF06080_consen   14 ILEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL---PNVRPPLALDVSAPP   89 (204)
T ss_pred             HHHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC---cccCCCeEeecCCCC
Confidence            456677776553 2269999999999999999999988999999999987777777766553   221 2233455443 


Q ss_pred             -CC------CCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          232 -PF------ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       232 -p~------~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                       +.      ..++||+|++..++|-.+-.  ..+++.+.++|++||.|++..+...
T Consensus        90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~  145 (204)
T PF06080_consen   90 WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNR  145 (204)
T ss_pred             CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence             22      24589999999999988743  5789999999999999999887664

The function of this family is unknown.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.07  E-value=3.4e-09  Score=89.76  Aligned_cols=124  Identities=10%  Similarity=0.102  Sum_probs=87.1

Q ss_pred             CCcHHHHHHHHHhhcc-cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975          149 PGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (304)
                      +..+.+.+.+...+.. .++.+|||+|||+|.++..+...+ ..+|+++|.++.+++.++++++..+.   .++.++++|
T Consensus        35 p~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~---~~v~~~~~D  110 (199)
T PRK10909         35 PTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKA---GNARVVNTN  110 (199)
T ss_pred             cCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCC---CcEEEEEch
Confidence            3344444555555432 456799999999999998655554 25999999999999999999988873   479999999


Q ss_pred             CCCC-CCCCCccceEEecchhccCCCHHHHHHHHHH--hcccCcEEEEEEeCC
Q 021975          228 VCRL-PFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLR  277 (304)
Q Consensus       228 ~~~l-p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r--~LkpgG~lvi~~~~~  277 (304)
                      +... +...++||+|++.--... .-...+++.+..  +|+|+|++++.....
T Consensus       111 ~~~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        111 ALSFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             HHHHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence            8652 222457999999754221 122345555555  378999888876654

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.06  E-value=1.5e-09  Score=90.11  Aligned_cols=115  Identities=19%  Similarity=0.157  Sum_probs=77.7

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----CCCCccc
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVD  239 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD  239 (304)
                      ..++.+|||+|||+|..+..++......+|+..|.++ .++..+.+++.++.....++.+...|..+..    .....||
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence            4567899999999999999999884356999999999 9999999998765223456777777654411    3346899


Q ss_pred             eEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      +|+...++..-.....+++.+.++|+++|.++++...+..
T Consensus       122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~  161 (173)
T PF10294_consen  122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRRRK  161 (173)
T ss_dssp             EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S-T
T ss_pred             EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEecH
Confidence            9999999998777788999999999999998877766643

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.06  E-value=3.9e-10  Score=95.05  Aligned_cols=109  Identities=15%  Similarity=0.161  Sum_probs=81.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ...+.||.|+|.|+.+..+.... ..+|-.+|+.+..++.|++.+....   ..-..+++..+++.....++||+|++-+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~P~~~~YDlIW~QW  130 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFTPEEGKYDLIWIQW  130 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG----TT-EEEEEEES
T ss_pred             CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhccCCCCcEeEEEehH
Confidence            45689999999999998776553 3499999999999999998776522   2446788888887765567999999999


Q ss_pred             hhccCCCHH--HHHHHHHHhcccCcEEEEEEeCCC
Q 021975          246 ALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       246 vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++-|+.|.+  .+|+.+...|+|+|++++-+....
T Consensus       131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~  165 (218)
T PF05891_consen  131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSS  165 (218)
T ss_dssp             -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCC
Confidence            999998665  899999999999999999887664

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PLN02366 spermidine synthase

Probab=99.05  E-value=2.5e-09  Score=96.40  Aligned_cols=108  Identities=17%  Similarity=0.208  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc-cCCCCeEEEEccCCCC--CCCCCccceEE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL--PFASGFVDAVH  242 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~l--p~~~~~fD~V~  242 (304)
                      +..+||+||||.|..+..+.+.....+++.+|+++.+++.+++.+...+. ...++++++.+|+...  ..++++||+|+
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi  170 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII  170 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence            46799999999999999999874446899999999999999998764210 1246899999997432  12256899999


Q ss_pred             ecchhccCCC----HHHHHHHHHHhcccCcEEEEE
Q 021975          243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       243 ~~~vl~h~~d----~~~~l~~~~r~LkpgG~lvi~  273 (304)
                      +...-.+.+.    -..+++.+.+.|+|||+++..
T Consensus       171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            8643322221    136899999999999998763

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.01  E-value=1.5e-09  Score=104.56  Aligned_cols=102  Identities=14%  Similarity=0.184  Sum_probs=87.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCCCccceEEe
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHA  243 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~~  243 (304)
                      ....+||||||.|.++..++...|+..++|+|+....+..+.++....+   ..|+.++..|+..+  -++++++|.|+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~---l~N~~~~~~~~~~~~~~~~~~sv~~i~i  423 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN---ITNFLLFPNNLDLILNDLPNNSLDGIYI  423 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence            4668999999999999999999999999999999999999988887776   36888888887433  267889999999


Q ss_pred             cchhccCCCHH-------------HHHHHHHHhcccCcEEEEEEe
Q 021975          244 GAALHCWPSPS-------------NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       244 ~~vl~h~~d~~-------------~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .+     |||.             .+++.+.++|||||.+.+.|=
T Consensus       424 ~F-----PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD  463 (506)
T PRK01544        424 LF-----PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD  463 (506)
T ss_pred             EC-----CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence            65     5663             689999999999999998874

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.00  E-value=3e-09  Score=100.93  Aligned_cols=113  Identities=17%  Similarity=0.255  Sum_probs=84.4

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--  231 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--  231 (304)
                      +.+.+.+.+...++.+|||+|||+|.++..+++...  +|+|+|+++.+++.|+++++.++   ..++.++.+|+.+.  
T Consensus       280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~---~~nv~~~~~d~~~~l~  354 (431)
T TIGR00479       280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNG---IANVEFLAGTLETVLP  354 (431)
T ss_pred             HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhC---CCceEEEeCCHHHHHH
Confidence            344555555555668999999999999999998865  99999999999999999998876   36899999998652  


Q ss_pred             --CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          232 --PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       232 --p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                        ++.+.+||+|++.-.=  ..-...+++.+. .++|++.++++.
T Consensus       355 ~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~-~l~~~~ivyvsc  396 (431)
T TIGR00479       355 KQPWAGQIPDVLLLDPPR--KGCAAEVLRTII-ELKPERIVYVSC  396 (431)
T ss_pred             HHHhcCCCCCEEEECcCC--CCCCHHHHHHHH-hcCCCEEEEEcC
Confidence              2335679999974320  111245566655 488988777764

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.98  E-value=4.1e-09  Score=94.79  Aligned_cols=121  Identities=20%  Similarity=0.266  Sum_probs=99.1

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc-cCC
Q 021975          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVC  229 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~  229 (304)
                      ..++.+.+.+.-...+|..|||-=||||.++....-.|.  .++|.|++..|++-++.|++..+   .....+... |+.
T Consensus       182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~---i~~~~~~~~~Da~  256 (347)
T COG1041         182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYG---IEDYPVLKVLDAT  256 (347)
T ss_pred             CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhC---cCceeEEEecccc
Confidence            456677788887888899999999999999999988877  99999999999999999999876   255656666 999


Q ss_pred             CCCCCCCccceEEecchhcc-----CCC----HHHHHHHHHHhcccCcEEEEEEeC
Q 021975          230 RLPFASGFVDAVHAGAALHC-----WPS----PSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h-----~~d----~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .+|+++.+||.|++.--.--     ...    ...+++.+.++||+||+++++.+.
T Consensus       257 ~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~  312 (347)
T COG1041         257 NLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR  312 (347)
T ss_pred             cCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC
Confidence            99999889999998421110     011    246899999999999999999983

>PRK03612 spermidine synthase; Provisional

Probab=98.98  E-value=2.5e-09  Score=103.44  Aligned_cols=109  Identities=16%  Similarity=0.145  Sum_probs=81.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--HHhcC--ccCCCCeEEEEccCCCC-CCCCCccce
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQDN--TILTSNLALVRADVCRL-PFASGFVDA  240 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~--~~~~~--~~~~~~i~~~~~d~~~l-p~~~~~fD~  240 (304)
                      ++++|||||||+|..+..+.+.....+++++|+++++++.++++  +...+  ....++++++.+|..+. ...+++||+
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv  376 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV  376 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence            46799999999999999998864336999999999999999983  22110  00236899999998663 223468999


Q ss_pred             EEecchhccCCCH-----HHHHHHHHHhcccCcEEEEEE
Q 021975          241 VHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       241 V~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      |++...-...+.+     .++++.+.+.|||||++++..
T Consensus       377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            9997543322222     358899999999999998865

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.97  E-value=4.6e-09  Score=91.71  Aligned_cols=117  Identities=12%  Similarity=0.127  Sum_probs=91.7

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ...+++...+...+..+|||||+++|+.+..+++. .++++++.+|.++...+.|++.++..+  ...+++++.+++.+.
T Consensus        66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~~~~I~~~~G~a~e~  143 (247)
T PLN02589         66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--VAHKIDFREGPALPV  143 (247)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeccHHHH
Confidence            44455555555556789999999999999999876 346799999999999999999999998  568999999998552


Q ss_pred             -C-C-----CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          232 -P-F-----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       232 -p-~-----~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                       + +     ..++||+|+..+-=   .+....++.+.++|+|||++++-.
T Consensus       144 L~~l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DN  190 (247)
T PLN02589        144 LDQMIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_pred             HHHHHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcC
Confidence             2 1     13689999997531   123467888899999999977643

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.97  E-value=1.6e-08  Score=81.13  Aligned_cols=123  Identities=16%  Similarity=0.299  Sum_probs=103.5

Q ss_pred             CCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEE
Q 021975          147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR  225 (304)
Q Consensus       147 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~  225 (304)
                      -.|...-..+.+...+....+.-|||+|.|+|-++.++.+++ +...++.+|.+++......+.        .+.+.++.
T Consensus        29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------~p~~~ii~  100 (194)
T COG3963          29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------YPGVNIIN  100 (194)
T ss_pred             ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------CCCccccc
Confidence            356667777888888888888899999999999999999985 467899999999999999884        46778999


Q ss_pred             ccCCCCC-----CCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          226 ADVCRLP-----FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       226 ~d~~~lp-----~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +|+.++.     +.+..||.|++.--+-.++--  .+.|+++...|.+||.++..++..
T Consensus       101 gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp  159 (194)
T COG3963         101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP  159 (194)
T ss_pred             cchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence            9998764     567789999998776666533  378999999999999999999874

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.96  E-value=9.5e-10  Score=92.43  Aligned_cols=105  Identities=19%  Similarity=0.299  Sum_probs=92.0

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (304)
                      ...++|||||-|.....+...+ -.+++-+|.|-.|++.++..-.     ....+....+|-+.++|.+++||+|+++..
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd-----p~i~~~~~v~DEE~Ldf~ens~DLiisSls  146 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD-----PSIETSYFVGDEEFLDFKENSVDLIISSLS  146 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC-----CceEEEEEecchhcccccccchhhhhhhhh
Confidence            5689999999999999999887 4699999999999999987321     123466778899999999999999999999


Q ss_pred             hccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       247 l~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +|++.|...-+.+++-.|||+|.|+.+.+..
T Consensus       147 lHW~NdLPg~m~~ck~~lKPDg~Fiasmlgg  177 (325)
T KOG2940|consen  147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGG  177 (325)
T ss_pred             hhhhccCchHHHHHHHhcCCCccchhHHhcc
Confidence            9999999999999999999999999877665

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.95  E-value=4.7e-09  Score=97.63  Aligned_cols=113  Identities=12%  Similarity=0.147  Sum_probs=82.5

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC-
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-  233 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-  233 (304)
                      .+.+..++...++.+|||+|||+|.++..++..+.  +|+|+|+++.+++.|+++.+.++.   .++.++.+|+.+... 
T Consensus       222 ~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~~~---~~~~~~~~d~~~~~~~  296 (374)
T TIGR02085       222 YATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQMLGL---DNLSFAALDSAKFATA  296 (374)
T ss_pred             HHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHHHHh
Confidence            34444444434567999999999999999997764  999999999999999999988872   489999999865321 


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ...+||+|++.---..  -...+++.+. .++|++++++...
T Consensus       297 ~~~~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc~  335 (374)
T TIGR02085       297 QMSAPELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSCN  335 (374)
T ss_pred             cCCCCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEeC
Confidence            1246999998532111  1134455554 4799998888763

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PLN02672 methionine S-methyltransferase

Probab=98.95  E-value=1.3e-08  Score=104.45  Aligned_cols=110  Identities=15%  Similarity=0.131  Sum_probs=82.8

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc-------------CCCCeEEEEccCCCCCC
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-------------LTSNLALVRADVCRLPF  233 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-------------~~~~i~~~~~d~~~lp~  233 (304)
                      +.+|||+|||+|..+..+++..+..+++|+|+|+.+++.|+++.+.+++.             ...++.++++|+.....
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            46899999999999999999887779999999999999999999875421             12479999999876331


Q ss_pred             C-CCccceEEecch--------------hccCC------------------CH------HHHHHHHHHhcccCcEEEEEE
Q 021975          234 A-SGFVDAVHAGAA--------------LHCWP------------------SP------SNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       234 ~-~~~fD~V~~~~v--------------l~h~~------------------d~------~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      . ...||+|+++--              .+|-|                  +.      .+++.+..++|||||.+++-.
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            1 236999999521              11110                  01      356788889999999888765


Q ss_pred             eC
Q 021975          275 FL  276 (304)
Q Consensus       275 ~~  276 (304)
                      -.
T Consensus       279 G~  280 (1082)
T PLN02672        279 GG  280 (1082)
T ss_pred             Cc
Confidence            43

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=1.1e-08  Score=84.10  Aligned_cols=74  Identities=24%  Similarity=0.336  Sum_probs=64.4

Q ss_pred             cccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEE
Q 021975          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (304)
                      ....+.+|+|+|||||.++...+-.|+ ..|+|+|+++++++.++++..+..    .++.|+.+|+.+.   .+.+|.++
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~----g~v~f~~~dv~~~---~~~~dtvi  113 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELL----GDVEFVVADVSDF---RGKFDTVI  113 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhC----CceEEEEcchhhc---CCccceEE
Confidence            345678899999999999999998884 599999999999999999998743    7899999999887   46789888


Q ss_pred             ec
Q 021975          243 AG  244 (304)
Q Consensus       243 ~~  244 (304)
                      ++
T Consensus       114 mN  115 (198)
T COG2263         114 MN  115 (198)
T ss_pred             EC
Confidence            85

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.92  E-value=1.2e-08  Score=85.12  Aligned_cols=120  Identities=20%  Similarity=0.259  Sum_probs=85.7

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCe---------EEEEeCCHHHHHHHHHHHHhcCccCCCCeE
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG---------VVALDFSENMLRQCYDFIKQDNTILTSNLA  222 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~---------v~giD~s~~~~~~a~~~~~~~~~~~~~~i~  222 (304)
                      +.+...+.......++..|||.-||+|.++.+.+..+.+..         ++|.|+++.+++.++++++..+  ....+.
T Consensus        14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag--~~~~i~   91 (179)
T PF01170_consen   14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG--VEDYID   91 (179)
T ss_dssp             HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEE
T ss_pred             HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc--cCCceE
Confidence            34455666666666788999999999999988877755445         8999999999999999999888  456799


Q ss_pred             EEEccCCCCCCCCCccceEEecchhccC-CC---H----HHHHHHHHHhcccCcEEEEEE
Q 021975          223 LVRADVCRLPFASGFVDAVHAGAALHCW-PS---P----SNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       223 ~~~~d~~~lp~~~~~fD~V~~~~vl~h~-~d---~----~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +.+.|+..+++.++++|+|++.--.-.- .+   .    ..+++++.++|++ ..+++.+
T Consensus        92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~  150 (179)
T PF01170_consen   92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT  150 (179)
T ss_dssp             EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred             EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence            9999999999778899999996432211 11   1    2568899999999 4344433

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.91  E-value=6.8e-09  Score=92.93  Aligned_cols=103  Identities=20%  Similarity=0.314  Sum_probs=83.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .++++|||+|||+|-++...++.| ..+|+++|.|. +++.|++.+..++  ....++++++.++++.+|..++|+|++-
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~-ia~~a~~iv~~N~--~~~ii~vi~gkvEdi~LP~eKVDiIvSE  134 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASS-IADFARKIVKDNG--LEDVITVIKGKVEDIELPVEKVDIIVSE  134 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechH-HHHHHHHHHHhcC--ccceEEEeecceEEEecCccceeEEeeh
Confidence            468899999999999999999998 57999999776 5599999999988  4567999999999887777899999985


Q ss_pred             ch---hccCCCHHHHHHHHHHhcccCcEEE
Q 021975          245 AA---LHCWPSPSNAVAEISRILRSGGVFV  271 (304)
Q Consensus       245 ~v---l~h~~d~~~~l~~~~r~LkpgG~lv  271 (304)
                      +.   |-+-.-...+|-.=-+.|+|||.++
T Consensus       135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  135 WMGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            43   2222234456666678999999865

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.91  E-value=8.7e-09  Score=91.77  Aligned_cols=87  Identities=11%  Similarity=0.192  Sum_probs=70.0

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      .....+.+.+.+...++.+|||||||+|.++..+++.++  +|+|+|+++.+++.+++++..      .++.++.+|+.+
T Consensus        27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D~~~   98 (272)
T PRK00274         27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE------DNLTIIEGDALK   98 (272)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc------CceEEEEChhhc
Confidence            344556666666666788999999999999999999986  999999999999999886532      579999999998


Q ss_pred             CCCCCCccceEEecc
Q 021975          231 LPFASGFVDAVHAGA  245 (304)
Q Consensus       231 lp~~~~~fD~V~~~~  245 (304)
                      +++++-.+|.|+++-
T Consensus        99 ~~~~~~~~~~vv~Nl  113 (272)
T PRK00274         99 VDLSELQPLKVVANL  113 (272)
T ss_pred             CCHHHcCcceEEEeC
Confidence            876542257777764

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.90  E-value=1.4e-08  Score=89.83  Aligned_cols=87  Identities=16%  Similarity=0.282  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.+++++..     ..++.++++|+..+
T Consensus        15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~   87 (258)
T PRK14896         15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKV   87 (258)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccC
Confidence            44556666666666788999999999999999999865  999999999999999987753     25799999999888


Q ss_pred             CCCCCccceEEecchh
Q 021975          232 PFASGFVDAVHAGAAL  247 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl  247 (304)
                      +++  .||.|+++.-.
T Consensus        88 ~~~--~~d~Vv~NlPy  101 (258)
T PRK14896         88 DLP--EFNKVVSNLPY  101 (258)
T ss_pred             Cch--hceEEEEcCCc
Confidence            765  48999887543

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.89  E-value=6.4e-09  Score=95.41  Aligned_cols=142  Identities=27%  Similarity=0.384  Sum_probs=110.8

Q ss_pred             HHHHHhHHHhhhcCCCCCcHHHHHHH------HHh-hcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 021975          133 FLYERGWRQNFNRSGFPGPDEEFKMA------QEY-FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ  205 (304)
Q Consensus       133 ~~~~~~w~~~~~~~~~~~~~~~~~~l------~~~-l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~  205 (304)
                      ..|.+.|-+.++...++......+..      ..+ ....++..++|+|||.|.....+.... ...++|+|.++..+..
T Consensus        70 dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~  148 (364)
T KOG1269|consen   70 DLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFR  148 (364)
T ss_pred             hhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHH
Confidence            45777788877766553332221111      111 112346689999999999999998875 4699999999998888


Q ss_pred             HHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          206 CYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       206 a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +........  ......++.+|+...|+++.+||.+.+..+.+|.+++..+++|+.+++||||+++..++..
T Consensus       149 ~~~~~~~~~--l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~  218 (364)
T KOG1269|consen  149 ANELAKKAY--LDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK  218 (364)
T ss_pred             HHHHHHHHH--hhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence            877666555  3455666889999999999999999999999999999999999999999999999987766

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.89  E-value=1.8e-08  Score=95.28  Aligned_cols=113  Identities=13%  Similarity=0.245  Sum_probs=80.1

Q ss_pred             HHHHHhhccc----CCCeEEEEcCCccHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975          156 KMAQEYFKSA----QGGLLVDVSCGSGLFSRKFAKSG----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (304)
Q Consensus       156 ~~l~~~l~~~----~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (304)
                      +.+.+.....    ++..|||||||+|-+....++.+    ...+|+++|-++.++...+++++.++  ...+|+++.+|
T Consensus       172 ~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w~~~V~vi~~d  249 (448)
T PF05185_consen  172 EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--WGDKVTVIHGD  249 (448)
T ss_dssp             HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--TTTTEEEEES-
T ss_pred             HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--CCCeEEEEeCc
Confidence            3444444432    35789999999999987766654    24699999999999988888777776  56889999999


Q ss_pred             CCCCCCCCCccceEEecc--hhccCCCHHHHHHHHHHhcccCcEEE
Q 021975          228 VCRLPFASGFVDAVHAGA--ALHCWPSPSNAVAEISRILRSGGVFV  271 (304)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~--vl~h~~d~~~~l~~~~r~LkpgG~lv  271 (304)
                      ++++..+. ++|+|++=.  .+-.-.-..+.|....|.|||||+++
T Consensus       250 ~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  250 MREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             ccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            99987654 899999832  11111123456888999999999876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.88  E-value=1.1e-08  Score=86.83  Aligned_cols=106  Identities=17%  Similarity=0.223  Sum_probs=74.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc---cC-------------------------
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT---IL-------------------------  217 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~---~~-------------------------  217 (304)
                      .+..+|||||..|.++..+++.+....+.|+||++..++.|++.++..--   ..                         
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            46789999999999999999997667899999999999999998753210   00                         


Q ss_pred             -----------CCCeEEEEccCCCCCCCCCccceEEecch--hccCC----CHHHHHHHHHHhcccCcEEEEE
Q 021975          218 -----------TSNLALVRADVCRLPFASGFVDAVHAGAA--LHCWP----SPSNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       218 -----------~~~i~~~~~d~~~lp~~~~~fD~V~~~~v--l~h~~----d~~~~l~~~~r~LkpgG~lvi~  273 (304)
                                 ..+..+...|+.  .+....||+|+|.-+  .-|+.    -...+++.+.++|.|||+|++-
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence                       001111122222  123567999998543  22322    2358999999999999988874

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.88  E-value=2.1e-09  Score=100.31  Aligned_cols=115  Identities=24%  Similarity=0.343  Sum_probs=81.6

Q ss_pred             HHHHHHHHHhhcc----cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEE---eCCHHHHHHHHHHHHhcCccCCCCeEEE
Q 021975          152 DEEFKMAQEYFKS----AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVAL---DFSENMLRQCYDFIKQDNTILTSNLALV  224 (304)
Q Consensus       152 ~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gi---D~s~~~~~~a~~~~~~~~~~~~~~i~~~  224 (304)
                      .+.++.|.+.+..    ..-.++||+|||.|.|+.+|.+++-  .+..+   |..+..++.|.++          ++..+
T Consensus        99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleR----------Gvpa~  166 (506)
T PF03141_consen   99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALER----------GVPAM  166 (506)
T ss_pred             HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhc----------Ccchh
Confidence            4455566666544    2334699999999999999999863  33333   4445566666652          23333


Q ss_pred             Ecc--CCCCCCCCCccceEEecchhccCC-CHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          225 RAD--VCRLPFASGFVDAVHAGAALHCWP-SPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       225 ~~d--~~~lp~~~~~fD~V~~~~vl~h~~-d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      .+-  ...+||++++||+|.|...+..+. +-..+|-++.|+|+|||+++++.+-.+
T Consensus       167 ~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  167 IGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             hhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence            222  478999999999999998876654 335689999999999999999876543

; GO: 0008168 methyltransferase activity

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.86  E-value=1.9e-08  Score=90.24  Aligned_cols=87  Identities=16%  Similarity=0.272  Sum_probs=71.5

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      ...+.+.+.....++.+|||||||+|.++..+.+.+.  +++++|+++.+++.+++++...+  ...++.++.+|+...+
T Consensus        23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~--~~~~v~ii~~Dal~~~   98 (294)
T PTZ00338         23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSP--LASKLEVIEGDALKTE   98 (294)
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcC--CCCcEEEEECCHhhhc
Confidence            4455666666666788999999999999999998875  89999999999999999887654  2468999999998766


Q ss_pred             CCCCccceEEecc
Q 021975          233 FASGFVDAVHAGA  245 (304)
Q Consensus       233 ~~~~~fD~V~~~~  245 (304)
                      +  ..||.|+++.
T Consensus        99 ~--~~~d~VvaNl  109 (294)
T PTZ00338         99 F--PYFDVCVANV  109 (294)
T ss_pred             c--cccCEEEecC
Confidence            4  3689888753

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.86  E-value=5e-08  Score=86.01  Aligned_cols=85  Identities=12%  Similarity=0.230  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ....+.+.+.+...++.+|||||||+|.++..+++.++  .++++|+++.+++.+++++..     ..++.++.+|+...
T Consensus        15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~   87 (253)
T TIGR00755        15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALKV   87 (253)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhcC
Confidence            44555666666666788999999999999999999986  899999999999999987643     25799999999988


Q ss_pred             CCCCCccc---eEEecc
Q 021975          232 PFASGFVD---AVHAGA  245 (304)
Q Consensus       232 p~~~~~fD---~V~~~~  245 (304)
                      +++  .+|   +|+++-
T Consensus        88 ~~~--~~d~~~~vvsNl  102 (253)
T TIGR00755        88 DLP--DFPKQLKVVSNL  102 (253)
T ss_pred             Chh--HcCCcceEEEcC
Confidence            765  466   565543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.85  E-value=1.7e-08  Score=89.93  Aligned_cols=123  Identities=13%  Similarity=0.163  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhhcc-cCCCeEEEEcCCccHHHHHH----HHhC----CCCeEEEEeCCHHHHHHHHHHHHh----------
Q 021975          152 DEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKF----AKSG----TYSGVVALDFSENMLRQCYDFIKQ----------  212 (304)
Q Consensus       152 ~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l----~~~~----~~~~v~giD~s~~~~~~a~~~~~~----------  212 (304)
                      ...++.+.+.+.. ...-+|+..||++|.=...+    .+..    ...+++|+|+|+.+++.|++-.-.          
T Consensus       100 ~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~  179 (287)
T PRK10611        100 AHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQ  179 (287)
T ss_pred             cHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHH
Confidence            3344444443322 22368999999999633222    2321    135899999999999999885200          


Q ss_pred             --------c-----C-----ccCCCCeEEEEccCCCCCCC-CCccceEEecchhccCCC--HHHHHHHHHHhcccCcEEE
Q 021975          213 --------D-----N-----TILTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFV  271 (304)
Q Consensus       213 --------~-----~-----~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~lv  271 (304)
                              .     +     ...-..|.|.+.|+.+.+++ .+.||+|+|.+|+.|+..  ...+++.+.+.|+|||+|+
T Consensus       180 ~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~  259 (287)
T PRK10611        180 QLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLF  259 (287)
T ss_pred             HHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEE
Confidence                    0     0     00124578999999875443 578999999999999965  4589999999999999887


Q ss_pred             EEE
Q 021975          272 GTT  274 (304)
Q Consensus       272 i~~  274 (304)
                      +..
T Consensus       260 lG~  262 (287)
T PRK10611        260 AGH  262 (287)
T ss_pred             EeC
Confidence            755

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.84  E-value=2.4e-08  Score=92.82  Aligned_cols=100  Identities=17%  Similarity=0.188  Sum_probs=81.4

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (304)
                      +.+|||++||+|.++..++......+|+++|+++.+++.++++++.++.   .++.++++|+..+....+.||+|++.--
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~---~~~~v~~~Da~~~l~~~~~fD~V~lDP~  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL---ENEKVFNKDANALLHEERKFDVVDIDPF  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CceEEEhhhHHHHHhhcCCCCEEEECCC
Confidence            4689999999999999998765445899999999999999999988873   4677899998664221457999998531


Q ss_pred             hccCCCHHHHHHHHHHhcccCcEEEEE
Q 021975          247 LHCWPSPSNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       247 l~h~~d~~~~l~~~~r~LkpgG~lvi~  273 (304)
                          ..+..++....+.+++||+++++
T Consensus       135 ----Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 ----GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             ----CCcHHHHHHHHHHhcCCCEEEEE
Confidence                45567888888889999999998

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.83  E-value=7.2e-08  Score=83.36  Aligned_cols=126  Identities=16%  Similarity=0.204  Sum_probs=92.6

Q ss_pred             CcHHHHHHHHHhhccc---CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc
Q 021975          150 GPDEEFKMAQEYFKSA---QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (304)
Q Consensus       150 ~~~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (304)
                      ..++..+++.+.+...   .+..|||+|||+|..+..+....+...++++|.|+.++..|.++.+..+  ...++.++..
T Consensus       129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--l~g~i~v~~~  206 (328)
T KOG2904|consen  129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--LSGRIEVIHN  206 (328)
T ss_pred             cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--hcCceEEEec
Confidence            3455566666666532   3447999999999999999998878999999999999999999999888  5677777754


Q ss_pred             cCCC-----CCCCCCccceEEecchhccCCC------------H--------------HHHHHHHHHhcccCcEEEEEEe
Q 021975          227 DVCR-----LPFASGFVDAVHAGAALHCWPS------------P--------------SNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       227 d~~~-----lp~~~~~fD~V~~~~vl~h~~d------------~--------------~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +.+.     .+...+++|+++++--.---.|            |              ..++.-+.|.|+|||.+.+...
T Consensus       207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  207 IMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             ccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence            4322     3455789999999632111011            1              1245667899999999999887


Q ss_pred             CC
Q 021975          276 LR  277 (304)
Q Consensus       276 ~~  277 (304)
                      .+
T Consensus       287 ~~  288 (328)
T KOG2904|consen  287 ER  288 (328)
T ss_pred             cc
Confidence            44

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.82  E-value=1.6e-07  Score=82.35  Aligned_cols=108  Identities=13%  Similarity=0.185  Sum_probs=90.0

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCccc
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD  239 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD  239 (304)
                      ....+||||.||.|.+........+.  .++.-.|.++..++..++.+++.++  ..-++|.++|+.+..   --+-..+
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL--~~i~~f~~~dAfd~~~l~~l~p~P~  211 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL--EDIARFEQGDAFDRDSLAALDPAPT  211 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC--ccceEEEecCCCCHhHhhccCCCCC
Confidence            45678999999999998888877654  6899999999999999999999983  455599999997632   1133579


Q ss_pred             eEEecchhccCCCHH---HHHHHHHHhcccCcEEEEEE
Q 021975          240 AVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       240 ~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +++.+..+|.++|-.   ..++.+.+.+.|||+++.+.
T Consensus       212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence            999999999999854   56899999999999988766

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.80  E-value=1.9e-08  Score=84.82  Aligned_cols=109  Identities=17%  Similarity=0.181  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCCccHHHHH----HHH---h--CCCCeEEEEeCCHHHHHHHHHHHHh-------------------cC---
Q 021975          166 QGGLLVDVSCGSGLFSRK----FAK---S--GTYSGVVALDFSENMLRQCYDFIKQ-------------------DN---  214 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~----l~~---~--~~~~~v~giD~s~~~~~~a~~~~~~-------------------~~---  214 (304)
                      +.-+|+.+||++|.=...    +.+   .  ....+++|+|+|+.+++.|++-.=.                   .+   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            456899999999963322    223   1  1145999999999999999874300                   00   


Q ss_pred             ---ccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEE
Q 021975          215 ---TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       215 ---~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~  274 (304)
                         ...-..+.|.+.|+.+.+...+.||+|+|.+||-++...  ..+++.+++.|+|||+|++..
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence               001245899999998844456789999999999999765  479999999999999999865

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=4.7e-08  Score=81.35  Aligned_cols=113  Identities=27%  Similarity=0.346  Sum_probs=86.0

Q ss_pred             HHHHhhc--ccCCCeEEEEcCCccHHHHHHHHh-C-CCCeEEEEeCCHHHHHHHHHHHHhcCc-------cCCCCeEEEE
Q 021975          157 MAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS-G-TYSGVVALDFSENMLRQCYDFIKQDNT-------ILTSNLALVR  225 (304)
Q Consensus       157 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~v~giD~s~~~~~~a~~~~~~~~~-------~~~~~i~~~~  225 (304)
                      .+.++|.  ..++..+||+|.|+|+++..++.. + ++..++|||.-++.++++++++...-.       ....++.++.
T Consensus        71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv  150 (237)
T KOG1661|consen   71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV  150 (237)
T ss_pred             HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence            3344444  456999999999999999888854 3 334569999999999999999876431       0235678999


Q ss_pred             ccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       226 ~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +|....--+...||.|++...      .....+++...|++||.+++-.-
T Consensus       151 GDgr~g~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  151 GDGRKGYAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             CCccccCCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEeec
Confidence            999887767889999999853      34456778888999999988654

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.80  E-value=7.5e-09  Score=90.07  Aligned_cols=99  Identities=26%  Similarity=0.400  Sum_probs=83.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCe-EEEEccCCCCCCCCCccceEEec
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i-~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .+..++|+|||.|.++..    .|..-++|.|.+...+..+++          .+. ....+|+..+|+++.+||.+++.
T Consensus        45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~----------~~~~~~~~ad~l~~p~~~~s~d~~lsi  110 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKR----------SGGDNVCRADALKLPFREESFDAALSI  110 (293)
T ss_pred             CcceeeecccCCcccCcC----CCcceeeecchhhhhcccccc----------CCCceeehhhhhcCCCCCCccccchhh
Confidence            367899999999976632    255689999999999988877          333 68889999999999999999999


Q ss_pred             chhccCCCH---HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          245 AALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       245 ~vl~h~~d~---~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      .|+||+...   ..+++++.+.|+|||...+..+...
T Consensus       111 avihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~  147 (293)
T KOG1331|consen  111 AVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE  147 (293)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence            999999754   4789999999999999888877653

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.79  E-value=2.9e-08  Score=83.90  Aligned_cols=100  Identities=21%  Similarity=0.334  Sum_probs=75.5

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .++.+|+|+.||.|.++..+++.+....|+++|++|.+++..+++++.++  ....+..+.+|...+.. .+.||-|++.
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk--v~~~i~~~~~D~~~~~~-~~~~drvim~  176 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK--VENRIEVINGDAREFLP-EGKFDRVIMN  176 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC--CCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence            34789999999999999999996555699999999999999999999998  56779999999988754 7899999986


Q ss_pred             chhccCCCHHHHHHHHHHhcccCcEEE
Q 021975          245 AALHCWPSPSNAVAEISRILRSGGVFV  271 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~lv  271 (304)
                      ..    ..-..+|..+.+++|+||++-
T Consensus       177 lp----~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  177 LP----ESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             -T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred             Ch----HHHHHHHHHHHHHhcCCcEEE
Confidence            42    123467899999999999763

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK04148 hypothetical protein; Provisional

Probab=98.77  E-value=1.7e-07  Score=73.61  Aligned_cols=107  Identities=11%  Similarity=0.146  Sum_probs=75.4

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      +.+.+.+.+...++.++||||||+|. ++..|++.|.  +|+++|+++..++.+++          ..+.++.+|+.+..
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~----------~~~~~v~dDlf~p~   71 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKK----------LGLNAFVDDLFNPN   71 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHH----------hCCeEEECcCCCCC
Confidence            34556666655567899999999996 8888888887  99999999999998877          35789999998754


Q ss_pred             CC-CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 FA-SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 ~~-~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +. -+.+|+|.+...   -++....+.++.+.+  |.-+++.....
T Consensus        72 ~~~y~~a~liysirp---p~el~~~~~~la~~~--~~~~~i~~l~~  112 (134)
T PRK04148         72 LEIYKNAKLIYSIRP---PRDLQPFILELAKKI--NVPLIIKPLSG  112 (134)
T ss_pred             HHHHhcCCEEEEeCC---CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence            32 346899988642   112233444444433  44577766654

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.77  E-value=1.5e-07  Score=79.30  Aligned_cols=122  Identities=14%  Similarity=0.103  Sum_probs=83.6

Q ss_pred             cHHHHHHHHHhhc-ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC
Q 021975          151 PDEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (304)
Q Consensus       151 ~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (304)
                      .+...+.+...+. ..++.++||++||+|.++..++.++. ..|+++|.++.+++.++++++..+  ...++.++.+|+.
T Consensus        33 ~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~--~~~~~~~~~~D~~  109 (189)
T TIGR00095        33 TRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLK--SGEQAEVVRNSAL  109 (189)
T ss_pred             hHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhC--CcccEEEEehhHH
Confidence            3333344444332 23578999999999999999999974 589999999999999999998887  3457899999994


Q ss_pred             CC-C-C-CCC-ccceEEecchhccCCCHHHHHHHHHH--hcccCcEEEEEEeC
Q 021975          230 RL-P-F-ASG-FVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFL  276 (304)
Q Consensus       230 ~l-p-~-~~~-~fD~V~~~~vl~h~~d~~~~l~~~~r--~LkpgG~lvi~~~~  276 (304)
                      .. . + ... .||+|+..--... .....+++.+..  +|+++|++++....
T Consensus       110 ~~l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       110 RALKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             HHHHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            42 2 1 122 4788887533321 223444554443  68888877766544

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=1.3e-07  Score=77.11  Aligned_cols=112  Identities=19%  Similarity=0.276  Sum_probs=85.2

Q ss_pred             hcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccce
Q 021975          162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (304)
                      +.......+||||||+|..+..|++. +++..+.++|+++.+++...+..+.++    .++..+++|+..- +..++.|+
T Consensus        39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~----~~~~~V~tdl~~~-l~~~~VDv  113 (209)
T KOG3191|consen   39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR----VHIDVVRTDLLSG-LRNESVDV  113 (209)
T ss_pred             HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC----CccceeehhHHhh-hccCCccE
Confidence            33334678999999999999999887 677889999999999999888887776    6789999998763 33589999


Q ss_pred             EEecchhccCC---C------------------HHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          241 VHAGAALHCWP---S------------------PSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       241 V~~~~vl~h~~---d------------------~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++.+--..-.+   .                  .++++..+-.+|.|.|++++....+.
T Consensus       114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N  172 (209)
T KOG3191|consen  114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN  172 (209)
T ss_pred             EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence            99863221110   0                  12456677788899999999887663

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.73  E-value=2.3e-07  Score=77.48  Aligned_cols=98  Identities=15%  Similarity=0.198  Sum_probs=83.8

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhc
Q 021975          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH  248 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~  248 (304)
                      +++|||+|.|.-+.-++-..|+.+++.+|....-+...+......++   .++.++++.+++ +....+||+|++..+  
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L---~nv~v~~~R~E~-~~~~~~fd~v~aRAv--  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL---SNVEVINGRAEE-PEYRESFDVVTARAV--  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH-TTTTT-EEEEEEESS--
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC---CCEEEEEeeecc-cccCCCccEEEeehh--
Confidence            89999999999999999988888999999999999999998888874   689999999988 445789999999875  


Q ss_pred             cCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          249 CWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       249 h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                        .....+++-+...|++||.+++.-
T Consensus       125 --~~l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  125 --APLDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             --SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             --cCHHHHHHHHHHhcCCCCEEEEEc
Confidence              557788899999999999988876

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.71  E-value=8.4e-08  Score=88.72  Aligned_cols=114  Identities=19%  Similarity=0.173  Sum_probs=90.2

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----CCCCccceEE
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVH  242 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~V~  242 (304)
                      +++|||+=|=||.++.+.+..| -.+|+++|.|...++.|+++++.+++ ...++.|+++|+...-    -...+||+|+
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~-~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi  295 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGL-DGDRHRFIVGDVFKWLRKAERRGEKFDLII  295 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCC-CccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence            8899999999999999999887 36999999999999999999999985 3466899999996531    2345899999


Q ss_pred             ecc---------hhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCCCCc
Q 021975          243 AGA---------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST  282 (304)
Q Consensus       243 ~~~---------vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~  282 (304)
                      +.-         ...-..+-..++..+.++|+|||++++++..+.-+..
T Consensus       296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~  344 (393)
T COG1092         296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSD  344 (393)
T ss_pred             ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHH
Confidence            831         1111123346789999999999999999987754333

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.68  E-value=9.1e-08  Score=88.30  Aligned_cols=113  Identities=15%  Similarity=0.159  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      +.+.+.+.+++... +.+|||++||+|.++..+++...  +|+|+|+++.+++.|+++++.++.   .++.++.+|+.++
T Consensus       184 ~~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~---~~v~~~~~d~~~~  257 (353)
T TIGR02143       184 IKMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNI---DNVQIIRMSAEEF  257 (353)
T ss_pred             HHHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCC---CcEEEEEcCHHHH
Confidence            34445555555432 24799999999999999998865  999999999999999999998873   5799999998663


Q ss_pred             CC-----------C-----CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          232 PF-----------A-----SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       232 p~-----------~-----~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .-           .     ...||+|+..--  ...-...+++.+.   +|+++++++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~---~~~~ivYvsC~  312 (353)
T TIGR02143       258 TQAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQ---AYERILYISCN  312 (353)
T ss_pred             HHHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHH---cCCcEEEEEcC
Confidence            21           0     113799888321  0001123444443   47888887664

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.68  E-value=1.3e-07  Score=84.99  Aligned_cols=99  Identities=16%  Similarity=0.251  Sum_probs=83.9

Q ss_pred             CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchh
Q 021975          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL  247 (304)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl  247 (304)
                      ...+|+|.|.|..+..+...++  .+-|++++...+-.++..+.       ++|..+-+|..+- .|.  -|+|++.++|
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P~--~daI~mkWiL  246 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TPK--GDAIWMKWIL  246 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CCC--cCeEEEEeec
Confidence            6899999999999999999888  89999999988877777543       4588888888664 444  3699999999


Q ss_pred             ccCCCHH--HHHHHHHHhcccCcEEEEEEeCCC
Q 021975          248 HCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       248 ~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ||+.|.+  ++|+++...|+|||.+++.+...+
T Consensus       247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p  279 (342)
T KOG3178|consen  247 HDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP  279 (342)
T ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence            9999775  899999999999999999998553

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=4.1e-08  Score=76.94  Aligned_cols=85  Identities=19%  Similarity=0.363  Sum_probs=70.0

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (304)
                      .+.+.....++++++|+|||.|-+........ ...|+|+|+++++++.++++.+...    .++.++++|+.++.+..+
T Consensus        39 ~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeEfE----vqidlLqcdildle~~~g  113 (185)
T KOG3420|consen   39 TIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEEFE----VQIDLLQCDILDLELKGG  113 (185)
T ss_pred             HHHhhhccccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHHhh----hhhheeeeeccchhccCC
Confidence            33444455678999999999999996666554 4589999999999999999988865    677999999999888889


Q ss_pred             ccceEEecch
Q 021975          237 FVDAVHAGAA  246 (304)
Q Consensus       237 ~fD~V~~~~v  246 (304)
                      .||.++.+--
T Consensus       114 ~fDtaviNpp  123 (185)
T KOG3420|consen  114 IFDTAVINPP  123 (185)
T ss_pred             eEeeEEecCC
Confidence            9999998643

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.67  E-value=2.5e-07  Score=79.87  Aligned_cols=92  Identities=16%  Similarity=0.169  Sum_probs=61.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeE-EEEccCCCC-----CCCCCcc
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCRL-----PFASGFV  238 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~-~~~~d~~~l-----p~~~~~f  238 (304)
                      .++.++||+|||+|.++..+++.+ ..+|+|+|+++.++....+   .     ..++. +...++..+     +..-..+
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~---~-----~~~v~~~~~~ni~~~~~~~~~~d~~~~  144 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLR---Q-----DERVKVLERTNIRYVTPADIFPDFATF  144 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHh---c-----CCCeeEeecCCcccCCHhHcCCCceee
Confidence            467799999999999999999986 3589999999988776222   1     12322 223333322     2122367


Q ss_pred             ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      |+++++..+        .+..+.+.|++ |.+++..
T Consensus       145 DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~  171 (228)
T TIGR00478       145 DVSFISLIS--------ILPELDLLLNP-NDLTLLF  171 (228)
T ss_pred             eEEEeehHh--------HHHHHHHHhCc-CeEEEEc
Confidence            777776532        48889999999 7655433

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=7.1e-07  Score=77.19  Aligned_cols=114  Identities=21%  Similarity=0.400  Sum_probs=96.7

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      .+.++..++...++.+|+|-|.|+|.++.++++. +|.+.++-+|+.+...+.|++-++.++  ...+++++..|+...-
T Consensus        93 Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg--i~~~vt~~hrDVc~~G  170 (314)
T KOG2915|consen   93 DIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG--IGDNVTVTHRDVCGSG  170 (314)
T ss_pred             cHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC--CCcceEEEEeecccCC
Confidence            3457888888899999999999999999999998 777899999999999999999999999  7899999999997754


Q ss_pred             CC--CCccceEEecchhccCCCHHHHHHHHHHhcccCcE-EEEEE
Q 021975          233 FA--SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGV-FVGTT  274 (304)
Q Consensus       233 ~~--~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~-lvi~~  274 (304)
                      |.  +..+|.|+..     ++.|..++-.+..+||.+|. |.-.+
T Consensus       171 F~~ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~csFS  210 (314)
T KOG2915|consen  171 FLIKSLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFS  210 (314)
T ss_pred             ccccccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEecc
Confidence            33  5678888874     58899889999999998874 44333

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.67  E-value=1e-07  Score=88.35  Aligned_cols=113  Identities=14%  Similarity=0.185  Sum_probs=78.6

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      +.+.+.+.+++... +.++||++||+|.++..+++...  +|+|+|.++.+++.++++++.++.   .++.++.+|+.+.
T Consensus       193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~---~~v~~~~~d~~~~  266 (362)
T PRK05031        193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGI---DNVQIIRMSAEEF  266 (362)
T ss_pred             HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCC---CcEEEEECCHHHH
Confidence            34555555555432 35799999999999999988765  999999999999999999988873   5899999998652


Q ss_pred             -C-CC--------------CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          232 -P-FA--------------SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       232 -p-~~--------------~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                       + +.              ...||+|+..--=  ..-...+++.+.   +|+++++++..
T Consensus       267 l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~---~~~~ivyvSC~  321 (362)
T PRK05031        267 TQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQ---AYERILYISCN  321 (362)
T ss_pred             HHHHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHH---ccCCEEEEEeC
Confidence             1 10              1258999984210  001123444443   46777777664

>PLN02823 spermine synthase

Probab=98.67  E-value=1.7e-07  Score=85.48  Aligned_cols=107  Identities=17%  Similarity=0.212  Sum_probs=80.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-ccCCCCeEEEEccCCCC-CCCCCccceEEe
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVHA  243 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (304)
                      ...+||.||+|.|..+..+.+..+..+++.+|+++.+++.|++.+.... ....++++++.+|.... ....++||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            4568999999999999998887555689999999999999999875421 01247899999998653 333578999998


Q ss_pred             cchhccCC-C------HHHHHH-HHHHhcccCcEEEEE
Q 021975          244 GAALHCWP-S------PSNAVA-EISRILRSGGVFVGT  273 (304)
Q Consensus       244 ~~vl~h~~-d------~~~~l~-~~~r~LkpgG~lvi~  273 (304)
                      ... .... .      -.++++ .+.+.|+|||++++.
T Consensus       183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            632 1110 1      135777 899999999998764

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.66  E-value=2.2e-07  Score=88.42  Aligned_cols=112  Identities=18%  Similarity=0.177  Sum_probs=87.8

Q ss_pred             cccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CCCCccce
Q 021975          163 KSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDA  240 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~  240 (304)
                      ...++.+|||+++|.|.-+.+++... ..+.+++.|+++..++..+++++..|   ..++.+...|...+. ...+.||.
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G---~~nv~v~~~D~~~~~~~~~~~fD~  186 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG---VSNVALTHFDGRVFGAALPETFDA  186 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCchhhhhhhchhhcCe
Confidence            55678999999999999999998874 24589999999999999999999987   367888888887653 22457999


Q ss_pred             EEe----c--chhccCCCH----------------HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          241 VHA----G--AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       241 V~~----~--~vl~h~~d~----------------~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      |+.    +  +++..-++.                .++|..+.+.|||||+|+-+|..-
T Consensus       187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence            995    2  233332211                357899999999999999888764

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.64  E-value=2e-07  Score=84.63  Aligned_cols=131  Identities=13%  Similarity=0.126  Sum_probs=90.1

Q ss_pred             CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHhcCccCC
Q 021975          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALDFSENMLRQCYDFIKQDNTILT  218 (304)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~  218 (304)
                      +.|.+|..+.+++.+.+...++.+|+|.+||+|.++..+.+.       ....+++|+|+++.++..++-++..++. ..
T Consensus        26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~-~~  104 (311)
T PF02384_consen   26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI-DN  104 (311)
T ss_dssp             GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH-HC
T ss_pred             ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc-cc
Confidence            357889999999999998877888999999999999888763       2456999999999999999887765542 12


Q ss_pred             CCeEEEEccCCCCCCC--CCccceEEecchhccC--------CC-------------HHHHHHHHHHhcccCcEEEEEEe
Q 021975          219 SNLALVRADVCRLPFA--SGFVDAVHAGAALHCW--------PS-------------PSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       219 ~~i~~~~~d~~~lp~~--~~~fD~V~~~~vl~h~--------~d-------------~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ....+..+|....+..  ...||+|+++--+.-.        .+             ...++..+.+.||+||++.+..+
T Consensus       105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence            3346888887654432  4789999996322111        01             12578999999999999888887


Q ss_pred             CC
Q 021975          276 LR  277 (304)
Q Consensus       276 ~~  277 (304)
                      ..
T Consensus       185 ~~  186 (311)
T PF02384_consen  185 NG  186 (311)
T ss_dssp             HH
T ss_pred             ch
Confidence            54

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.64  E-value=3e-07  Score=81.72  Aligned_cols=104  Identities=12%  Similarity=0.167  Sum_probs=83.8

Q ss_pred             CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccC-CCCeEEEEccCCCCC-CCCCccceEEecc
Q 021975          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-TSNLALVRADVCRLP-FASGFVDAVHAGA  245 (304)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-~~~i~~~~~d~~~lp-~~~~~fD~V~~~~  245 (304)
                      ++||-||.|.|..++.+.+..+..+++.+|+++..++.+++.+....... .+++.++..|..+.- -...+||+|++..
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            69999999999999999999877899999999999999999886643111 478999999986532 1233899999864


Q ss_pred             hhccCCCH------HHHHHHHHHhcccCcEEEEE
Q 021975          246 ALHCWPSP------SNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       246 vl~h~~d~------~~~l~~~~r~LkpgG~lvi~  273 (304)
                      .=. . .|      ..+++.+++.|+++|+++..
T Consensus       158 tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         158 TDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            311 1 12      57899999999999999987

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.62  E-value=3.3e-07  Score=82.92  Aligned_cols=81  Identities=15%  Similarity=0.133  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CccCCCCeEEEE-ccCCCCC----CCCCccc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVR-ADVCRLP----FASGFVD  239 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~i~~~~-~d~~~lp----~~~~~fD  239 (304)
                      +..++||||||+|.....++...+..+++|+|+++.+++.|+++++.+ +  ...++.+.. .+...+.    .+.+.||
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~--l~~~I~~~~~~~~~~i~~~i~~~~~~fD  191 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG--LNGAIRLRLQKDSKAIFKGIIHKNERFD  191 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC--CcCcEEEEEccchhhhhhcccccCCceE
Confidence            467899999999988777776655679999999999999999999988 5  346777754 3332221    2356899


Q ss_pred             eEEecchhc
Q 021975          240 AVHAGAALH  248 (304)
Q Consensus       240 ~V~~~~vl~  248 (304)
                      +|+|+--++
T Consensus       192 livcNPPf~  200 (321)
T PRK11727        192 ATLCNPPFH  200 (321)
T ss_pred             EEEeCCCCc
Confidence            999975544

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.61  E-value=3e-07  Score=81.58  Aligned_cols=101  Identities=20%  Similarity=0.290  Sum_probs=78.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      -.++.|||+|||+|-++...+..| ..+|+++|.| +|.++|++.++.++  ...+|.++.+-++++.+| ++.|+|++-
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~N~--~~~rItVI~GKiEdieLP-Ek~DviISE  250 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVASNN--LADRITVIPGKIEDIELP-EKVDVIISE  250 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhcCC--ccceEEEccCccccccCc-hhccEEEec
Confidence            357899999999999999888887 4699999965 59999999999887  679999999999998876 578999983


Q ss_pred             c---hhccCCCHHHHHHHHHHhcccCcEEE
Q 021975          245 A---ALHCWPSPSNAVAEISRILRSGGVFV  271 (304)
Q Consensus       245 ~---vl~h~~d~~~~l~~~~r~LkpgG~lv  271 (304)
                      -   .|-.-.-.+. .-..++.|||.|..+
T Consensus       251 PMG~mL~NERMLEs-Yl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  251 PMGYMLVNERMLES-YLHARKWLKPNGKMF  279 (517)
T ss_pred             cchhhhhhHHHHHH-HHHHHhhcCCCCccc
Confidence            2   2221111122 234569999999865

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.61  E-value=1e-07  Score=84.76  Aligned_cols=111  Identities=17%  Similarity=0.211  Sum_probs=80.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-C--CCCCccceEE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVDAVH  242 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~~~fD~V~  242 (304)
                      ++++|||+=|=+|.++.+.+..| ..+|+.+|.|..+++.++++++.+++ ...++.+++.|+.+. .  -..++||+|+
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~-~~~~~~~~~~Dvf~~l~~~~~~~~fD~II  200 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGL-DLDRHRFIQGDVFKFLKRLKKGGRFDLII  200 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence            47899999999999999888776 35899999999999999999999884 236799999998652 1  1246899999


Q ss_pred             ecc---h---hccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          243 AGA---A---LHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       243 ~~~---v---l~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      +.-   .   ..-..+...++..+.++|+|||.|++++....
T Consensus       201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~  242 (286)
T PF10672_consen  201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH  242 (286)
T ss_dssp             E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            831   1   00011334678899999999999988887653

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.60  E-value=1.8e-07  Score=78.18  Aligned_cols=126  Identities=13%  Similarity=0.190  Sum_probs=89.8

Q ss_pred             CCcHHHHHHHHHhhcc--cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc
Q 021975          149 PGPDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (304)
                      |+.+...+.+-+.+..  .++.++||+-||+|.++.....+|. .+|+.+|.++..++..+++++..+  ...++.++..
T Consensus        23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~--~~~~~~v~~~   99 (183)
T PF03602_consen   23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLG--LEDKIRVIKG   99 (183)
T ss_dssp             SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEES
T ss_pred             CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhC--CCcceeeecc
Confidence            5555666666666654  4789999999999999999998883 599999999999999999999887  3456899998


Q ss_pred             cCCC-CC---CCCCccceEEecchhccCCCHHHHHHHHH--HhcccCcEEEEEEeCC
Q 021975          227 DVCR-LP---FASGFVDAVHAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTFLR  277 (304)
Q Consensus       227 d~~~-lp---~~~~~fD~V~~~~vl~h~~d~~~~l~~~~--r~LkpgG~lvi~~~~~  277 (304)
                      |... ++   -....||+|++.--...-.....+++.+.  .+|+++|++++-....
T Consensus       100 d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  100 DAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             SHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             CHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            8643 21   14678999999643322111256777776  7899999888877665

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.58  E-value=9.6e-07  Score=70.00  Aligned_cols=104  Identities=29%  Similarity=0.429  Sum_probs=75.8

Q ss_pred             EEEEcCCccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC--CCCCC-CccceEEecc
Q 021975          170 LVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFAS-GFVDAVHAGA  245 (304)
Q Consensus       170 vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~-~~fD~V~~~~  245 (304)
                      ++|+|||+|... .+...... ..++|+|+++.++..++..... .  ....+.+...+...  +++.. ..||++ ...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~  126 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A--GLGLVDFVVADALGGVLPFEDSASFDLV-ISL  126 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c--CCCceEEEEeccccCCCCCCCCCceeEE-eee
Confidence            999999999966 33333222 3899999999999986554432 2  01116788888776  77776 489999 554


Q ss_pred             hhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ...|..++...+.++.+.|+|+|.+++......
T Consensus       127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         127 LVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             eehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            444444488899999999999999999887754

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.57  E-value=2.6e-07  Score=77.86  Aligned_cols=89  Identities=19%  Similarity=0.262  Sum_probs=71.1

Q ss_pred             CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC---CCccceEEec
Q 021975          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAVHAG  244 (304)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V~~~  244 (304)
                      .++|||||=+......-  .+ .-.|+.||+++                  ..-.+.+.|+.+.|++   ++.||+|+++
T Consensus        53 lrlLEVGals~~N~~s~--~~-~fdvt~IDLns------------------~~~~I~qqDFm~rplp~~~~e~FdvIs~S  111 (219)
T PF11968_consen   53 LRLLEVGALSTDNACST--SG-WFDVTRIDLNS------------------QHPGILQQDFMERPLPKNESEKFDVISLS  111 (219)
T ss_pred             ceEEeecccCCCCcccc--cC-ceeeEEeecCC------------------CCCCceeeccccCCCCCCcccceeEEEEE
Confidence            58999999865544332  22 23699999976                  3345678899887764   6799999999


Q ss_pred             chhccCCCHH---HHHHHHHHhcccCcE-----EEEEEeCC
Q 021975          245 AALHCWPSPS---NAVAEISRILRSGGV-----FVGTTFLR  277 (304)
Q Consensus       245 ~vl~h~~d~~---~~l~~~~r~LkpgG~-----lvi~~~~~  277 (304)
                      .||+++|+|.   +.+..+.+.|+|+|.     |+++.+..
T Consensus       112 LVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~  152 (219)
T PF11968_consen  112 LVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP  152 (219)
T ss_pred             EEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence            9999999997   689999999999999     99988765

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.57  E-value=6.1e-07  Score=79.06  Aligned_cols=109  Identities=14%  Similarity=0.144  Sum_probs=80.5

Q ss_pred             CCeEEEEcCCccH--HH--HHHHHhCC-----CCeEEEEeCCHHHHHHHHHHHHh-----cC------------------
Q 021975          167 GGLLVDVSCGSGL--FS--RKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQ-----DN------------------  214 (304)
Q Consensus       167 ~~~vLDiGcG~G~--~~--~~l~~~~~-----~~~v~giD~s~~~~~~a~~~~~~-----~~------------------  214 (304)
                      .-+|+-+||++|.  ++  ..+.+.++     ..+++|+|+|..+++.|+.-.=.     .+                  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5689999999996  22  33333332     57999999999999999763311     11                  


Q ss_pred             ---ccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEe
Q 021975          215 ---TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       215 ---~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~  275 (304)
                         ...-..|.|...|+...+...+.||+|+|.+||-++..+.  +++..++..|+|||+|++..-
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s  242 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS  242 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence               0011346788888876553467899999999999997664  789999999999999998653

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.54  E-value=9.9e-07  Score=80.02  Aligned_cols=117  Identities=21%  Similarity=0.295  Sum_probs=97.3

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      +...+.+....  |.+|||+=+|-|.++..+++++.- .|+++|++|.++++.+++++.++  ....+..+++|....+.
T Consensus       178 ER~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~--v~~~v~~i~gD~rev~~  252 (341)
T COG2520         178 ERARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNK--VEGRVEPILGDAREVAP  252 (341)
T ss_pred             HHHHHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcC--ccceeeEEeccHHHhhh
Confidence            34455555555  889999999999999999999862 49999999999999999999998  45669999999988775


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      .-+.+|-|++...    .+-..++....+.+++||++...+.....
T Consensus       253 ~~~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~  294 (341)
T COG2520         253 ELGVADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPED  294 (341)
T ss_pred             ccccCCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence            5588999999753    34567889999999999999998887643

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.54  E-value=1.3e-06  Score=74.05  Aligned_cols=121  Identities=17%  Similarity=0.164  Sum_probs=94.8

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (304)
                      -...+...++..+++....++.||||.=+|+.+..++...| +++|+++|+++...+.+.+..+..+  ....+.+++++
T Consensus        56 ~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag--v~~KI~~i~g~  133 (237)
T KOG1663|consen   56 LVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG--VDHKITFIEGP  133 (237)
T ss_pred             ecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc--ccceeeeeecc
Confidence            33445555666666666778999999999999888887743 6799999999999999999999988  68899999998


Q ss_pred             CCCC-C-----CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          228 VCRL-P-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       228 ~~~l-p-----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +.+. +     ...++||+++..+-=   .+-....+++.++||+||++++--
T Consensus       134 a~esLd~l~~~~~~~tfDfaFvDadK---~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  134 ALESLDELLADGESGTFDFAFVDADK---DNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             hhhhHHHHHhcCCCCceeEEEEccch---HHHHHHHHHHHhhcccccEEEEec
Confidence            8542 1     346899999985411   122367899999999999888744

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=4.4e-07  Score=85.43  Aligned_cols=111  Identities=18%  Similarity=0.276  Sum_probs=88.0

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      .+.+.+...+++...++.++||+=||.|.++..+++...  +|+|+|+++++++.|+++.+.++.   .|+.|..+++++
T Consensus       278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~i---~N~~f~~~~ae~  352 (432)
T COG2265         278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANGI---DNVEFIAGDAEE  352 (432)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcCC---CcEEEEeCCHHH
Confidence            355667777788877788999999999999999998876  999999999999999999999983   669999999988


Q ss_pred             CCCC---CCccceEEecchhccCCCHH------HHHHHHHHhcccCcEEEEEEe
Q 021975          231 LPFA---SGFVDAVHAGAALHCWPSPS------NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       231 lp~~---~~~fD~V~~~~vl~h~~d~~------~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ....   ...+|.|+.        ||.      .+++. ...++|..+++++..
T Consensus       353 ~~~~~~~~~~~d~Vvv--------DPPR~G~~~~~lk~-l~~~~p~~IvYVSCN  397 (432)
T COG2265         353 FTPAWWEGYKPDVVVV--------DPPRAGADREVLKQ-LAKLKPKRIVYVSCN  397 (432)
T ss_pred             HhhhccccCCCCEEEE--------CCCCCCCCHHHHHH-HHhcCCCcEEEEeCC
Confidence            6533   247899998        342      33443 345667777777764

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.51  E-value=1.3e-07  Score=80.02  Aligned_cols=113  Identities=18%  Similarity=0.188  Sum_probs=84.3

Q ss_pred             hhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCCCcc
Q 021975          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFV  238 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~f  238 (304)
                      .++..++.+|||.+.|-|+.+....++|. ..|+-+|.++..++.|.-+-=..++ ....+.++.+|+.+.  .|+|.+|
T Consensus       129 ~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V~~~~D~sf  206 (287)
T COG2521         129 LVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVVKDFDDESF  206 (287)
T ss_pred             eeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHHhcCCcccc
Confidence            34456789999999999999999999983 5899999999999888654322222 223689999998664  3789999


Q ss_pred             ceEEec---chhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          239 DAVHAG---AALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       239 D~V~~~---~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      |+|+..   +++.--.--.++.+|++|+|||||.++-.+-
T Consensus       207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG  246 (287)
T COG2521         207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVG  246 (287)
T ss_pred             ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeC
Confidence            999873   1111111235789999999999999886553

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=2e-06  Score=79.36  Aligned_cols=130  Identities=19%  Similarity=0.212  Sum_probs=98.0

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (304)
                      .+....+.+.++.+|||+.++.|.=+.+++....+  ..|+++|.++.-++..+++++..|   ..++..+..|...++ 
T Consensus       146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG---~~nv~~~~~d~~~~~~  222 (355)
T COG0144         146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG---VRNVIVVNKDARRLAE  222 (355)
T ss_pred             HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC---CCceEEEecccccccc
Confidence            34445677888999999999999999999888653  457999999999999999999988   356788888876543 


Q ss_pred             --CCCCccceEEe------cchhccCCCH----------------HHHHHHHHHhcccCcEEEEEEeCCCCCCccccccc
Q 021975          233 --FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV  288 (304)
Q Consensus       233 --~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~~~~~  288 (304)
                        ...+.||.|+.      .+++.--|+.                .++|....++|||||+|+.+|..-....+.-....
T Consensus       223 ~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~  302 (355)
T COG0144         223 LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVER  302 (355)
T ss_pred             cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHH
Confidence              22235999997      3455433322                25799999999999999999987755555444433

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.50  E-value=9.3e-08  Score=79.37  Aligned_cols=103  Identities=17%  Similarity=0.160  Sum_probs=80.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      .+.++||+|+|.|..+..++....  +|++.|.|..|..+.+++          +..++..  .+..--+-+||+|.|..
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk----------~ynVl~~--~ew~~t~~k~dli~clN  177 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK----------NYNVLTE--IEWLQTDVKLDLILCLN  177 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc----------CCceeee--hhhhhcCceeehHHHHH
Confidence            457899999999999999998876  899999999998887762          2222211  11111244699999999


Q ss_pred             hhccCCCHHHHHHHHHHhccc-CcEEEEEEeCCCCCCc
Q 021975          246 ALHCWPSPSNAVAEISRILRS-GGVFVGTTFLRYTSST  282 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~Lkp-gG~lvi~~~~~~~~~~  282 (304)
                      +|..-.+|-++|+.++.+|+| .|+++++-...+..+.
T Consensus       178 lLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYV  215 (288)
T KOG3987|consen  178 LLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYV  215 (288)
T ss_pred             HHHhhcChHHHHHHHHHHhccCCCcEEEEEEeccccee
Confidence            999999999999999999999 8998887766544433

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.48  E-value=5.5e-07  Score=80.53  Aligned_cols=85  Identities=21%  Similarity=0.280  Sum_probs=68.0

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (304)
                      +.+.+.+...++..+||.+||.|..+..+++..+ ..+|+|+|.++.+++.+++++.. .    .++.++++++.++.  
T Consensus         9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~----~ri~~i~~~f~~l~~~   83 (296)
T PRK00050          9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F----GRFTLVHGNFSNLKEV   83 (296)
T ss_pred             HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C----CcEEEEeCCHHHHHHH
Confidence            3455556666788999999999999999999864 67999999999999999988754 2    58999999998753  


Q ss_pred             CCCC--ccceEEecc
Q 021975          233 FASG--FVDAVHAGA  245 (304)
Q Consensus       233 ~~~~--~fD~V~~~~  245 (304)
                      .+++  ++|+|++..
T Consensus        84 l~~~~~~vDgIl~DL   98 (296)
T PRK00050         84 LAEGLGKVDGILLDL   98 (296)
T ss_pred             HHcCCCccCEEEECC
Confidence            2222  799999843

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=1e-06  Score=74.05  Aligned_cols=110  Identities=22%  Similarity=0.286  Sum_probs=78.5

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      +.++..++--..++..|+|+|+..|.|++.+++. +....|+|+|+.|--              ...++.++++|+..-+
T Consensus        33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~~iq~d~~~~~   98 (205)
T COG0293          33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVIFLQGDITDED   98 (205)
T ss_pred             HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCceEEeeeccCcc
Confidence            3444444433456889999999999999999987 444569999998732              3577999999997743


Q ss_pred             --------CCCCccceEEecch--------hccCCCH---HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 --------FASGFVDAVHAGAA--------LHCWPSP---SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 --------~~~~~fD~V~~~~v--------l~h~~d~---~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                              +....+|+|++...        .+|....   ..++.-+..+|+|||.+++-.+..
T Consensus        99 ~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg  162 (205)
T COG0293          99 TLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG  162 (205)
T ss_pred             HHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence                    33456799997433        1222111   135666778999999999998876

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.48  E-value=9.4e-07  Score=77.79  Aligned_cols=122  Identities=20%  Similarity=0.216  Sum_probs=91.0

Q ss_pred             HHHHHHhhc----ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh---cC-------------
Q 021975          155 FKMAQEYFK----SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---DN-------------  214 (304)
Q Consensus       155 ~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---~~-------------  214 (304)
                      .+.+.+.+.    .....+||--|||-|++...++..|.  .+.|.|.|--|+-..+-.+..   .+             
T Consensus        41 ~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn  118 (270)
T PF07942_consen   41 LDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSN  118 (270)
T ss_pred             HHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccC
Confidence            344444444    23456899999999999999999987  999999999886555443321   00             


Q ss_pred             ---------------------ccCCCCeEEEEccCCCCCCCC---CccceEEecchhccCCCHHHHHHHHHHhcccCcEE
Q 021975          215 ---------------------TILTSNLALVRADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVF  270 (304)
Q Consensus       215 ---------------------~~~~~~i~~~~~d~~~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l  270 (304)
                                           .....++....+|+......+   ++||+|+..+.|.-..+.-..++.|.++|||||+.
T Consensus       119 ~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~W  198 (270)
T PF07942_consen  119 QKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYW  198 (270)
T ss_pred             CCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEE
Confidence                                 012345777788887654444   79999999988888888899999999999999977


Q ss_pred             EEEEeCCC
Q 021975          271 VGTTFLRY  278 (304)
Q Consensus       271 vi~~~~~~  278 (304)
                      |=..+..+
T Consensus       199 IN~GPLly  206 (270)
T PF07942_consen  199 INFGPLLY  206 (270)
T ss_pred             EecCCccc
Confidence            76666554

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=1.3e-06  Score=76.21  Aligned_cols=86  Identities=15%  Similarity=0.210  Sum_probs=71.8

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ...++.+.+.....++..|||||+|.|.++..|.+.+.  .|+++|+++.++...++.+..     ..+++++.+|+...
T Consensus        16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk~   88 (259)
T COG0030          16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALKF   88 (259)
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhcC
Confidence            34456677777777788999999999999999999987  999999999999999997652     36899999999988


Q ss_pred             CCCCC-ccceEEec
Q 021975          232 PFASG-FVDAVHAG  244 (304)
Q Consensus       232 p~~~~-~fD~V~~~  244 (304)
                      ++++- .++.|+++
T Consensus        89 d~~~l~~~~~vVaN  102 (259)
T COG0030          89 DFPSLAQPYKVVAN  102 (259)
T ss_pred             cchhhcCCCEEEEc
Confidence            87643 56778775

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.45  E-value=9.1e-07  Score=77.55  Aligned_cols=110  Identities=11%  Similarity=0.113  Sum_probs=81.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc-cCCCCeEEEEccCCCCC-CCCC-ccceEE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRLP-FASG-FVDAVH  242 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~lp-~~~~-~fD~V~  242 (304)
                      +..+||-||.|.|..+..+.+..+..+++.+|+++.+++.|++.+..... ...++++++.+|....- -..+ +||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            57899999999999999999887567999999999999999998765321 13478999999985421 1133 899999


Q ss_pred             ecchhccCCC----HHHHHHHHHHhcccCcEEEEEEe
Q 021975          243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       243 ~~~vl~h~~d----~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ....-...+.    -..+++.+.+.|+|||++++...
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~  192 (246)
T PF01564_consen  156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG  192 (246)
T ss_dssp             EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence            8543211111    24789999999999999998763

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.43  E-value=1.8e-06  Score=74.79  Aligned_cols=85  Identities=15%  Similarity=0.242  Sum_probs=71.6

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      .++.+.+.....++..|||+|.|||.++..+.+.+.  +|+++|+++.|+....++.+...  ....++++.+|+...++
T Consensus        46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp--~~~kLqV~~gD~lK~d~  121 (315)
T KOG0820|consen   46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTP--KSGKLQVLHGDFLKTDL  121 (315)
T ss_pred             HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCC--ccceeeEEecccccCCC
Confidence            445555556667789999999999999999999988  99999999999999999887654  45789999999988765


Q ss_pred             CCCccceEEec
Q 021975          234 ASGFVDAVHAG  244 (304)
Q Consensus       234 ~~~~fD~V~~~  244 (304)
                      +  .||.++++
T Consensus       122 P--~fd~cVsN  130 (315)
T KOG0820|consen  122 P--RFDGCVSN  130 (315)
T ss_pred             c--ccceeecc
Confidence            4  68999984

>PRK00536 speE spermidine synthase; Provisional

Probab=98.42  E-value=2.4e-06  Score=75.19  Aligned_cols=99  Identities=15%  Similarity=0.147  Sum_probs=76.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-ccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      ..++||=||.|.|..++.+.++-.  +|+-+|+++.+++.+++.+.... ....++++++.. +.+.  ..++||+|+..
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~--~~~~fDVIIvD  146 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL--DIKKYDLIICL  146 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc--cCCcCCEEEEc
Confidence            468999999999999999999853  99999999999999999654321 113577777752 2221  23689999986


Q ss_pred             chhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          245 AALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ..     .+..+.+.+.+.|+|||+++...
T Consensus       147 s~-----~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        147 QE-----PDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             CC-----CChHHHHHHHHhcCCCcEEEECC
Confidence            42     45678899999999999988754

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.41  E-value=2.3e-06  Score=80.02  Aligned_cols=104  Identities=21%  Similarity=0.378  Sum_probs=89.2

Q ss_pred             CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchh
Q 021975          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL  247 (304)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl  247 (304)
                      -++|-+|||.-.+...+.+.| +..++-+|+|+..++....+....    .+-..+...|+..+.|++++||+|+....+
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtl  124 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTL  124 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCcc
Confidence            389999999999999998887 569999999999998888766432    367899999999999999999999999999


Q ss_pred             ccCCCHH----------HHHHHHHHhcccCcEEEEEEeC
Q 021975          248 HCWPSPS----------NAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       248 ~h~~d~~----------~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +++-.+.          ..+.+++|+|++||+++..+..
T Consensus       125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~  163 (482)
T KOG2352|consen  125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV  163 (482)
T ss_pred             ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence            9874221          3578999999999999988874

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.40  E-value=3.1e-06  Score=75.40  Aligned_cols=116  Identities=18%  Similarity=0.089  Sum_probs=76.5

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC-CCCCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RLPFA  234 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~lp~~  234 (304)
                      .+...+....+.+|||+|+|+|..+.++.+..+ ..+++++|.|+.|++.++..++...  ......+...... ..++ 
T Consensus        24 El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~-  100 (274)
T PF09243_consen   24 ELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP--NNRNAEWRRVLYRDFLPF-  100 (274)
T ss_pred             HHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc--ccccchhhhhhhcccccC-
Confidence            344444444567999999999998877776532 4589999999999999999776543  1111111111111 1222 


Q ss_pred             CCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                       ...|+|++.++|..+++.  ..+++.+.+.+++  .|++++++.+
T Consensus       101 -~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~  143 (274)
T PF09243_consen  101 -PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP  143 (274)
T ss_pred             -CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence             234999999999999872  2355555555554  8999988763

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.39  E-value=1.1e-05  Score=73.15  Aligned_cols=108  Identities=14%  Similarity=0.055  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC----CC--CC
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PF--AS  235 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~--~~  235 (304)
                      ++..++|+|||+|.-+..|.+.    +....++++|+|.++++.+.+++..... ....+.-+++|+.+.    +-  ..
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~~  154 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPENR  154 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhccccccc
Confidence            4668999999999876655443    3345899999999999999999873221 123344488888552    21  12


Q ss_pred             CccceEEec-chhccCCCHH--HHHHHHHH-hcccCcEEEEEE
Q 021975          236 GFVDAVHAG-AALHCWPSPS--NAVAEISR-ILRSGGVFVGTT  274 (304)
Q Consensus       236 ~~fD~V~~~-~vl~h~~d~~--~~l~~~~r-~LkpgG~lvi~~  274 (304)
                      ....+++.. .+|.+++..+  .+|+++++ .|+|||.|++..
T Consensus       155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL  197 (319)
T ss_pred             CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence            234566554 4788886554  68999999 999999887754

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.37  E-value=6.9e-06  Score=68.14  Aligned_cols=126  Identities=17%  Similarity=0.174  Sum_probs=94.7

Q ss_pred             CCcHHHHHHHHHhhcc--cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc
Q 021975          149 PGPDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (304)
                      |+.++..+.+-+.+..  ..+.++||+=+|+|.++.....+|. ..++.+|.+..+....+++++..+  ...+..++..
T Consensus        24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~--~~~~~~~~~~  100 (187)
T COG0742          24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALG--LEGEARVLRN  100 (187)
T ss_pred             CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhC--CccceEEEee
Confidence            5566666777777765  5789999999999999999999974 699999999999999999999877  4578889999


Q ss_pred             cCCCC-C-CCC-CccceEEecchhcc-CCCHHHHHHH--HHHhcccCcEEEEEEeCC
Q 021975          227 DVCRL-P-FAS-GFVDAVHAGAALHC-WPSPSNAVAE--ISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       227 d~~~l-p-~~~-~~fD~V~~~~vl~h-~~d~~~~l~~--~~r~LkpgG~lvi~~~~~  277 (304)
                      |+... + ... +.||+|+..--++. +.+....+..  -..+|+|+|.+++-....
T Consensus       101 da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         101 DALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             cHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            98742 1 222 24999999654441 1222333333  446799999988877654

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.36  E-value=6.1e-06  Score=70.29  Aligned_cols=102  Identities=17%  Similarity=0.127  Sum_probs=84.0

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (304)
                      +.+++|||.|.|.-+.-++-..|+.+|+-+|....-+...+...+..++   .++.++++.++++.-....||+|++..+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L---~nv~i~~~RaE~~~~~~~~~D~vtsRAv  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL---ENVEIVHGRAEEFGQEKKQYDVVTSRAV  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC---CCeEEehhhHhhcccccccCcEEEeehc
Confidence            5799999999999999988778888999999999999999988888774   7899999999987632111999999875


Q ss_pred             hccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          247 LHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       247 l~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                          .+...+.+-+..++|+||.++..-.
T Consensus       145 ----a~L~~l~e~~~pllk~~g~~~~~k~  169 (215)
T COG0357         145 ----ASLNVLLELCLPLLKVGGGFLAYKG  169 (215)
T ss_pred             ----cchHHHHHHHHHhcccCCcchhhhH
Confidence                4556677788889999998765443

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.36  E-value=4.3e-06  Score=81.37  Aligned_cols=129  Identities=12%  Similarity=0.109  Sum_probs=86.2

Q ss_pred             CCCCcHHHHHHHHHhhccc-------CCCeEEEEcCCccHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHHH
Q 021975          147 GFPGPDEEFKMAQEYFKSA-------QGGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIK  211 (304)
Q Consensus       147 ~~~~~~~~~~~l~~~l~~~-------~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~giD~s~~~~~~a~~~~~  211 (304)
                      .|+++..+.+.+.+.+...       ...+|||.|||+|.++..+.+..+        ...++|+|+++..+..++.++.
T Consensus         5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~   84 (524)
T TIGR02987         5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG   84 (524)
T ss_pred             ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence            4566777777777655321       345899999999999988876542        2578999999999999999887


Q ss_pred             hcCccCCCCeEEEEccCCCC-----CCCCCccceEEecchhc--cCC---------------------------------
Q 021975          212 QDNTILTSNLALVRADVCRL-----PFASGFVDAVHAGAALH--CWP---------------------------------  251 (304)
Q Consensus       212 ~~~~~~~~~i~~~~~d~~~l-----p~~~~~fD~V~~~~vl~--h~~---------------------------------  251 (304)
                      ..+   ...+.+...|....     .-..+.||+|+.+--..  +..                                 
T Consensus        85 ~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (524)
T TIGR02987        85 EFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYS  161 (524)
T ss_pred             hcC---CCCceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchh
Confidence            654   12345555553321     11125799999963221  110                                 


Q ss_pred             C----------H-HHH-HHHHHHhcccCcEEEEEEeCCC
Q 021975          252 S----------P-SNA-VAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       252 d----------~-~~~-l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      +          . ..+ ++...++|++||++.+.++...
T Consensus       162 ~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~~~~I~P~s~  200 (524)
T TIGR02987       162 DPIRKYAGVGTEYSRVFEEISLEIANKNGYVSIISPASW  200 (524)
T ss_pred             hhhcccCCcccHHHHHHHHHHHHhcCCCCEEEEEEChHH
Confidence            0          0 113 3567899999999999998764

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.36  E-value=6.5e-07  Score=72.95  Aligned_cols=72  Identities=22%  Similarity=0.308  Sum_probs=56.1

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CCCCc-cceEEec
Q 021975          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGF-VDAVHAG  244 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~-fD~V~~~  244 (304)
                      +|+|+.||.|..+.++++.+.  +|+++|+++..++.|+.+.+..|  ...++.++++|+.++.  +.... +|+|+++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYG--v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYG--VADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            799999999999999999987  99999999999999999999988  6789999999997642  22222 8999984

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.33  E-value=4.4e-07  Score=75.76  Aligned_cols=99  Identities=20%  Similarity=0.267  Sum_probs=65.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--------CC--
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA--  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~--  234 (304)
                      ++.++||+||++|.|+..+.+.+ +...|+|+|+.+..              ...++.++++|+....        +.  
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------------~~~~~~~i~~d~~~~~~~~~i~~~~~~~   88 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------------PLQNVSFIQGDITNPENIKDIRKLLPES   88 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------------S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------------cccceeeeecccchhhHHHhhhhhcccc
Confidence            45899999999999999999987 44699999998751              2356677777764321        11  


Q ss_pred             CCccceEEecchhccCCCH-----------HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          235 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      .+.||+|++........++           ...+.-+...|+|||.+++-.+...
T Consensus        89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~  143 (181)
T PF01728_consen   89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP  143 (181)
T ss_dssp             TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST
T ss_pred             ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc
Confidence            2689999997743332221           1345566678999999999888753

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.27  E-value=1.7e-06  Score=79.85  Aligned_cols=73  Identities=23%  Similarity=0.467  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      +.+.+.+.+++...++ .|||+-||.|.++..+++...  +|+|+|.++.+++.|+++++.+++   .++.|+.++.++
T Consensus       183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i---~n~~f~~~~~~~  255 (352)
T PF05958_consen  183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGI---DNVEFIRGDAED  255 (352)
T ss_dssp             HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHH
T ss_pred             HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCC---CcceEEEeeccc
Confidence            4556667777776555 899999999999999999877  999999999999999999999873   789999877644

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.26  E-value=1.4e-05  Score=73.17  Aligned_cols=140  Identities=16%  Similarity=0.078  Sum_probs=98.6

Q ss_pred             HHHHhHHHhhhcCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCC-----------------------
Q 021975          134 LYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-----------------------  190 (304)
Q Consensus       134 ~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-----------------------  190 (304)
                      +..++||..-  +.-+-.+.+...+...-.-.++..++|-=||+|.++...+..+.+                       
T Consensus       161 LhkRGyR~~~--g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~  238 (381)
T COG0116         161 LHKRGYRVYD--GPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWD  238 (381)
T ss_pred             hhhccccccC--CCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHH
Confidence            3455555432  222334455555555555555678999999999999888876531                       


Q ss_pred             ---------C-------eEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchh-ccCCCH
Q 021975          191 ---------S-------GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-HCWPSP  253 (304)
Q Consensus       191 ---------~-------~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl-~h~~d~  253 (304)
                               .       .++|+|+++.+++.|+.+.+..|  ..+.|.|.++|+..++-+-+.+|+|+++--. +-+.+.
T Consensus       239 ~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AG--v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~  316 (381)
T COG0116         239 KLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAG--VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSE  316 (381)
T ss_pred             HHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcC--CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCCh
Confidence                     1       27799999999999999999999  7888999999999887443789999996321 112222


Q ss_pred             ---H----HHHHHHHHhcccCcEEEEEEeCC
Q 021975          254 ---S----NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       254 ---~----~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                         .    .+.+.+++.++-.+.+++++.-.
T Consensus       317 ~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e~  347 (381)
T COG0116         317 ALVAKLYREFGRTLKRLLAGWSRYVFTTSED  347 (381)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCceEEEEccHH
Confidence               1    34556667778778888877543

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.25  E-value=4.5e-06  Score=70.99  Aligned_cols=116  Identities=15%  Similarity=0.185  Sum_probs=68.7

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH-------hcCccCCCCeEEEEccCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK-------QDNTILTSNLALVRADVC  229 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-------~~~~~~~~~i~~~~~d~~  229 (304)
                      .+.+.++..++...+|||||.|....+.+....-.+.+|||+.+...+.|+...+       ..+. ...++.+..+|+.
T Consensus        33 ~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~-~~~~v~l~~gdfl  111 (205)
T PF08123_consen   33 KILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK-RPGKVELIHGDFL  111 (205)
T ss_dssp             HHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEECS-TT
T ss_pred             HHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc-ccccceeeccCcc
Confidence            3445566677889999999999988777765434469999999998877765432       2221 2457888899987


Q ss_pred             CCCCCC---CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          230 RLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       230 ~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +.++..   ..-|+|+++.... -++....|.++...||+|-+++-..
T Consensus       112 ~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~  158 (205)
T PF08123_consen  112 DPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTK  158 (205)
T ss_dssp             THHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred             ccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECC
Confidence            644211   2468999987542 1233456788888999988776543

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.24  E-value=4.1e-06  Score=69.27  Aligned_cols=116  Identities=17%  Similarity=0.189  Sum_probs=88.3

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      ..+++...-..-.+++|||+|.|+|......++.| ...|+..|+.+..+...+-+.+.++    ..+.++..|...   
T Consensus        67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~ang----v~i~~~~~d~~g---  138 (218)
T COG3897          67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANG----VSILFTHADLIG---  138 (218)
T ss_pred             HHHHHhcCccccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhcc----ceeEEeeccccC---
Confidence            34444444444578999999999999999999988 4689999999999999888888876    788888888766   


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .+..||+|+...++..-+.-.+++.-..++...|-.+++.++.+
T Consensus       139 ~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R  182 (218)
T COG3897         139 SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGR  182 (218)
T ss_pred             CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence            35789999999887665555677774444444455566777766

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.23  E-value=1.7e-05  Score=79.73  Aligned_cols=127  Identities=15%  Similarity=0.073  Sum_probs=87.9

Q ss_pred             CCcHHHHHHHHHhhcc-cCCCeEEEEcCCccHHHHHHHHhC---------------------------------------
Q 021975          149 PGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSG---------------------------------------  188 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~---------------------------------------  188 (304)
                      |-.+.+...+.....- .++..++|.+||+|.++...+...                                       
T Consensus       172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~  251 (702)
T PRK11783        172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG  251 (702)
T ss_pred             CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence            3445555555554432 356799999999999998776521                                       


Q ss_pred             ---CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC--CCccceEEecchh-ccCC---CHHHHHHH
Q 021975          189 ---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGAAL-HCWP---SPSNAVAE  259 (304)
Q Consensus       189 ---~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~~fD~V~~~~vl-~h~~---d~~~~l~~  259 (304)
                         ...+++|+|+++.+++.|++++...+  ....+.+.++|+.+++.+  .++||+|+++--. +.+.   +...+.++
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g--~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~  329 (702)
T PRK11783        252 LAELPSKFYGSDIDPRVIQAARKNARRAG--VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQ  329 (702)
T ss_pred             ccccCceEEEEECCHHHHHHHHHHHHHcC--CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHH
Confidence               01269999999999999999999988  456799999999887643  3579999997432 1222   22334444


Q ss_pred             HHHhc---ccCcEEEEEEeCC
Q 021975          260 ISRIL---RSGGVFVGTTFLR  277 (304)
Q Consensus       260 ~~r~L---kpgG~lvi~~~~~  277 (304)
                      +...+   .+|+.+++.+...
T Consensus       330 lg~~lk~~~~g~~~~llt~~~  350 (702)
T PRK11783        330 LGRRLKQQFGGWNAALFSSSP  350 (702)
T ss_pred             HHHHHHHhCCCCeEEEEeCCH
Confidence            44444   4898888877543

>PRK11827 hypothetical protein; Provisional

Probab=98.22  E-value=5.6e-07  Score=60.02  Aligned_cols=46  Identities=15%  Similarity=0.336  Sum_probs=38.5

Q ss_pred             cCCeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCeeeeecccC
Q 021975           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (304)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (304)
                      .+++++||+|+++|......         +.+.|..|+..|++++|++.++.+..
T Consensus         5 LLeILaCP~ckg~L~~~~~~---------~~Lic~~~~laYPI~dgIPVlL~deA   50 (60)
T PRK11827          5 LLEIIACPVCNGKLWYNQEK---------QELICKLDNLAFPLRDGIPVLLETEA   50 (60)
T ss_pred             HHhheECCCCCCcCeEcCCC---------CeEECCccCeeccccCCccccCHHHh
Confidence            46789999999999764422         57999999999999999999987643

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=98.21  E-value=5e-06  Score=69.04  Aligned_cols=105  Identities=20%  Similarity=0.381  Sum_probs=76.0

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc----CCCCeEEEEccCCC-CC--CCCCccc
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI----LTSNLALVRADVCR-LP--FASGFVD  239 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~----~~~~i~~~~~d~~~-lp--~~~~~fD  239 (304)
                      ...+.|||||.|.++..|+..+|+..+.|+||-....++.+++++..+..    ...++.+...+... +|  |..+..+
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            45799999999999999999999999999999999999999998765411    12455566555543 22  2223222


Q ss_pred             eEEecchhccCCCHH-------------HHHHHHHHhcccCcEEEEEEeC
Q 021975          240 AVHAGAALHCWPSPS-------------NAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       240 ~V~~~~vl~h~~d~~-------------~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      -     .+..++||.             .++++..-+|++||.++..+-.
T Consensus       141 k-----mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv  185 (249)
T KOG3115|consen  141 K-----MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV  185 (249)
T ss_pred             c-----ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence            2     223345553             4789999999999999877643

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.19  E-value=1.6e-05  Score=73.69  Aligned_cols=101  Identities=13%  Similarity=0.151  Sum_probs=82.0

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC-CCCccceEEec
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAG  244 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~  244 (304)
                      +.+|||+.||+|..+..++...+ -.+|+++|+++.+++.++++++.++.   .++.+++.|+..+-. ....||+|...
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~---~~~~v~~~Da~~~l~~~~~~fDvIdlD  121 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV---ENIEVPNEDAANVLRYRNRKFHVIDID  121 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence            35899999999999999988731 35899999999999999999988762   468899999876421 13579999885


Q ss_pred             chhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          245 AALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      - .   ..+..++..+.+.+++||+|+++.
T Consensus       122 P-f---Gs~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       122 P-F---GTPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             C-C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence            4 2   356679999999999999999873

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG2835 Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=9.8e-07  Score=58.20  Aligned_cols=46  Identities=22%  Similarity=0.534  Sum_probs=39.7

Q ss_pred             cCCeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCeeeeecccC
Q 021975           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (304)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (304)
                      .+++++||.|+++|......         +.+.|+.|+..|++.+|++.++++..
T Consensus         5 LLeiLaCP~~kg~L~~~~~~---------~~L~c~~~~~aYpI~dGIPvlL~~ea   50 (60)
T COG2835           5 LLEILACPVCKGPLVYDEEK---------QELICPRCKLAYPIRDGIPVLLPDEA   50 (60)
T ss_pred             hheeeeccCcCCcceEeccC---------CEEEecccCceeecccCccccCchhh
Confidence            46889999999998776643         68999999999999999999998643

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.14  E-value=1.5e-05  Score=63.82  Aligned_cols=102  Identities=20%  Similarity=0.216  Sum_probs=70.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHHH-----hCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccc
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAK-----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD  239 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD  239 (304)
                      .+...|+|+|||.|+++..++.     . ++.+|+|+|.++..++.+.++.+..+.....++.+..++...... ....+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  101 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD  101 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence            5677999999999999999998     4 567999999999999999998877652223566777766654322 45667


Q ss_pred             eEEecchhccCCCHHHHHHHHHHhcccCcEEEEE
Q 021975          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~  273 (304)
                      +++..|.--.+.  ..+++...+   ++-.+++.
T Consensus       102 ~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~  130 (141)
T PF13679_consen  102 ILVGLHACGDLS--DRALRLFIR---PNARFLVL  130 (141)
T ss_pred             EEEEeecccchH--HHHHHHHHH---cCCCEEEE
Confidence            888766544332  234444444   55444443

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.10  E-value=2.6e-05  Score=70.45  Aligned_cols=87  Identities=22%  Similarity=0.255  Sum_probs=67.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .++.++|||||++|.|+..+.+.|.  .|++||..+ +.....         ..++|....+|......+.+.+|.|+|.
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~-l~~~L~---------~~~~V~h~~~d~fr~~p~~~~vDwvVcD  277 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP-MAQSLM---------DTGQVEHLRADGFKFRPPRKNVDWLVCD  277 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh-cCHhhh---------CCCCEEEEeccCcccCCCCCCCCEEEEe
Confidence            4688999999999999999999986  999999654 222221         2478999988886653236789999997


Q ss_pred             chhccCCCHHHHHHHHHHhcccC
Q 021975          245 AALHCWPSPSNAVAEISRILRSG  267 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~Lkpg  267 (304)
                      .+    ..|.++.+-+.+.|..|
T Consensus       278 mv----e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        278 MV----EKPARVAELMAQWLVNG  296 (357)
T ss_pred             cc----cCHHHHHHHHHHHHhcC
Confidence            65    46888888888888776

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.10  E-value=2.4e-05  Score=70.07  Aligned_cols=123  Identities=18%  Similarity=0.210  Sum_probs=93.3

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--C
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F  233 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~  233 (304)
                      .....+.+.++..|||++++.|.-+.+++.... .+.+++.|+++.-+...+.+++..|   ..++..+..|.....  .
T Consensus        76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---~~~v~~~~~D~~~~~~~~  152 (283)
T PF01189_consen   76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---VFNVIVINADARKLDPKK  152 (283)
T ss_dssp             HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSEEEEESHHHHHHHHH
T ss_pred             cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC---CceEEEEeeccccccccc
Confidence            334456677889999999999999888888743 5799999999999999999999887   477888877776541  2


Q ss_pred             CCCccceEEe------cchhccCCCH----------------HHHHHHHHHhc----ccCcEEEEEEeCCCCCCc
Q 021975          234 ASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRIL----RSGGVFVGTTFLRYTSST  282 (304)
Q Consensus       234 ~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~~~r~L----kpgG~lvi~~~~~~~~~~  282 (304)
                      ....||.|+.      .+++..-++.                .++|+.+.+.+    ||||+++.+|-.-....+
T Consensus       153 ~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eEN  227 (283)
T PF01189_consen  153 PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEEN  227 (283)
T ss_dssp             HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGT
T ss_pred             cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHH
Confidence            2346999997      2445544433                15789999999    999999998876533333

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.09  E-value=2.6e-05  Score=69.13  Aligned_cols=105  Identities=12%  Similarity=0.233  Sum_probs=77.4

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ....+.+.+.+...++..|||||+|.|.++..|.+.+.  +++++|+++..++..++.+..     ..++.++.+|+..+
T Consensus        16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~~   88 (262)
T PF00398_consen   16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLKW   88 (262)
T ss_dssp             HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTTS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhcc
Confidence            45566777777777889999999999999999999985  999999999999999987652     36899999999887


Q ss_pred             CCCC---CccceEEecchhccCCCHHHHHHHHHHhccc
Q 021975          232 PFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRS  266 (304)
Q Consensus       232 p~~~---~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkp  266 (304)
                      ....   ..-..|+++--. +  --..++.++...-+.
T Consensus        89 ~~~~~~~~~~~~vv~NlPy-~--is~~il~~ll~~~~~  123 (262)
T PF00398_consen   89 DLYDLLKNQPLLVVGNLPY-N--ISSPILRKLLELYRF  123 (262)
T ss_dssp             CGGGHCSSSEEEEEEEETG-T--GHHHHHHHHHHHGGG
T ss_pred             ccHHhhcCCceEEEEEecc-c--chHHHHHHHhhcccc
Confidence            6543   233455554322 1  223566666664444

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.06  E-value=1.7e-05  Score=65.17  Aligned_cols=99  Identities=17%  Similarity=0.187  Sum_probs=78.1

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (304)
                      ...+.|+|+|+|-++...+.+..  +|++++.+|...+.|.+++...+   ..++.++.+|+.+..|  ...|+|+|-..
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g---~~n~evv~gDA~~y~f--e~ADvvicEml  105 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPG---DVNWEVVVGDARDYDF--ENADVVICEML  105 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCC---CcceEEEecccccccc--cccceeHHHHh
Confidence            46899999999999988888765  99999999999999999987665   5899999999999887  35799988432


Q ss_pred             --hccCCCHHHHHHHHHHhcccCcEEEE
Q 021975          247 --LHCWPSPSNAVAEISRILRSGGVFVG  272 (304)
Q Consensus       247 --l~h~~d~~~~l~~~~r~LkpgG~lvi  272 (304)
                        .--......++..+...||-++.++=
T Consensus       106 DTaLi~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         106 DTALIEEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence              11111223567888888898888764

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=2.4e-06  Score=68.42  Aligned_cols=136  Identities=16%  Similarity=0.078  Sum_probs=89.8

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (304)
                      |..+.+.-.+........+..|||+|.|. |..+..++.+.+...|...|-++..++..++..-.+......+...+.-+
T Consensus        12 pseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~   91 (201)
T KOG3201|consen   12 PSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL   91 (201)
T ss_pred             ccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH
Confidence            33344444455444455678999999995 55566666677788999999999999999886544321112222222222


Q ss_pred             CCC--CCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCCCCccc
Q 021975          228 VCR--LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL  284 (304)
Q Consensus       228 ~~~--lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~  284 (304)
                      ...  ......+||+|++...+..-.--..+++.|.++|+|.|.-++..+.+..+...|
T Consensus        92 ~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF  150 (201)
T KOG3201|consen   92 IWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKF  150 (201)
T ss_pred             HhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHH
Confidence            211  112345899999977654433345788999999999999999888876555444

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.05  E-value=7e-05  Score=65.66  Aligned_cols=108  Identities=23%  Similarity=0.262  Sum_probs=69.4

Q ss_pred             CCeEEEEcCCcc--HHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CC----CCc
Q 021975          167 GGLLVDVSCGSG--LFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FA----SGF  237 (304)
Q Consensus       167 ~~~vLDiGcG~G--~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~----~~~  237 (304)
                      -...||||||-=  ..+.++++ ..|.++|+-+|.+|-.+..++..+....   .....++++|+.+..  +.    .+-
T Consensus        69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~---~g~t~~v~aD~r~p~~iL~~p~~~~~  145 (267)
T PF04672_consen   69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP---RGRTAYVQADLRDPEAILAHPEVRGL  145 (267)
T ss_dssp             --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T---TSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred             cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC---CccEEEEeCCCCCHHHHhcCHHHHhc
Confidence            357999999942  34455544 4788999999999999999999887543   123889999997732  11    122


Q ss_pred             cc-----eEEecchhccCC---CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          238 VD-----AVHAGAALHCWP---SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       238 fD-----~V~~~~vl~h~~---d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +|     .|++..+|||++   +|..+++.+...|.||.+|+++-...
T Consensus       146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~  193 (267)
T PF04672_consen  146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD  193 (267)
T ss_dssp             --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred             CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence            33     678889999996   57799999999999999999988765

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.01  E-value=7e-06  Score=69.01  Aligned_cols=93  Identities=17%  Similarity=0.208  Sum_probs=74.9

Q ss_pred             CCcHHHHHHHHHhhccc-CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975          149 PGPDEEFKMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (304)
                      ..++.+...+...+... ....|+|.-||.|..+..++..++  .|++||++|.-+..|+.+++-.|  ...++.|++||
T Consensus        76 vTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYG--I~~rItFI~GD  151 (263)
T KOG2730|consen   76 VTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYG--VPDRITFICGD  151 (263)
T ss_pred             eccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeec--CCceeEEEech
Confidence            44566666666655432 456899999999999999999998  99999999999999999999999  67799999999


Q ss_pred             CCCC----CCCCCccceEEecc
Q 021975          228 VCRL----PFASGFVDAVHAGA  245 (304)
Q Consensus       228 ~~~l----p~~~~~fD~V~~~~  245 (304)
                      +.++    .+....+|+|+.+.
T Consensus       152 ~ld~~~~lq~~K~~~~~vf~sp  173 (263)
T KOG2730|consen  152 FLDLASKLKADKIKYDCVFLSP  173 (263)
T ss_pred             HHHHHHHHhhhhheeeeeecCC
Confidence            9764    34444566777754

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.00  E-value=1.2e-05  Score=70.32  Aligned_cols=110  Identities=19%  Similarity=0.268  Sum_probs=73.6

Q ss_pred             CCCeEEEEcCCccHHH-HHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-------------ccCC------------C
Q 021975          166 QGGLLVDVSCGSGLFS-RKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-------------TILT------------S  219 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~-~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~------------~  219 (304)
                      ++.++||||||+--+. ..+.+...  +++..|.++...+..++.++..+             ++..            .
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~--~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFE--EIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEE--EEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhc--ceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            5678999999985442 22233344  89999999999888877775433             0000            0


Q ss_pred             Ce-EEEEccCCCCC-CCC-----CccceEEecchhccCC-CHH---HHHHHHHHhcccCcEEEEEEeCC
Q 021975          220 NL-ALVRADVCRLP-FAS-----GFVDAVHAGAALHCWP-SPS---NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       220 ~i-~~~~~d~~~lp-~~~-----~~fD~V~~~~vl~h~~-d~~---~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .| .++.+|+.+.+ +..     ..||+|++.++|+... |..   .+++++.++|||||.|++.....
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~  202 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG  202 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence            12 47788987643 332     2599999999999874 554   67999999999999999988765

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.00  E-value=7.9e-05  Score=65.92  Aligned_cols=109  Identities=13%  Similarity=0.150  Sum_probs=68.1

Q ss_pred             CCeEEEEcCCccHHHHHHH-H-hCCCCeEEEEeCCHHHHHHHHHHHH-hcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          167 GGLLVDVSCGSGLFSRKFA-K-SGTYSGVVALDFSENMLRQCYDFIK-QDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~-~-~~~~~~v~giD~s~~~~~~a~~~~~-~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      +.+|+=||+|.=.++..+. + .+.+..|+++|+++.+++.+++..+ ..+  ...++.|+.+|....+..-..||+|+.
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~~~m~f~~~d~~~~~~dl~~~DvV~l  198 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LSKRMSFITADVLDVTYDLKEYDVVFL  198 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H-SSEEEEES-GGGG-GG----SEEEE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--ccCCeEEEecchhccccccccCCEEEE
Confidence            3599999999866654444 3 3556689999999999999999877 334  468899999999876654568999987


Q ss_pred             cchhcc-CCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          244 GAALHC-WPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       244 ~~vl~h-~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .....- -.+..+++..+.+.++||..+++-....
T Consensus       199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G  233 (276)
T PF03059_consen  199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHG  233 (276)
T ss_dssp             -TT-S----SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred             hhhcccccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence            654331 1266789999999999999999875443

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.99  E-value=5.2e-05  Score=63.68  Aligned_cols=105  Identities=13%  Similarity=0.224  Sum_probs=83.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCCCccceEE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH  242 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~  242 (304)
                      .++++||+||-|-|-.-..+.++-+. +=+-||.+++..+..++..-.    ...++.++.+--++.  .++++.||.|+
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~----ek~nViil~g~WeDvl~~L~d~~FDGI~  174 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWR----EKENVIILEGRWEDVLNTLPDKHFDGIY  174 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccc----cccceEEEecchHhhhccccccCcceeE
Confidence            56899999999999988888888653 566789999999888774322    336788887776653  26689999999


Q ss_pred             ecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      -...-+|..|...+.+.+.++|||+|++-..-
T Consensus       175 yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN  206 (271)
T KOG1709|consen  175 YDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN  206 (271)
T ss_pred             eechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence            87766888888899999999999999886644

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.95  E-value=3.5e-05  Score=61.48  Aligned_cols=59  Identities=25%  Similarity=0.318  Sum_probs=51.0

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      ++||+|||.|.++..+++.++..+++++|+++.+.+.++++++.++.   .++.++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~---~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL---PNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEEeeeeC
Confidence            48999999999999999998867899999999999999999987762   458888777654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.93  E-value=0.00041  Score=59.01  Aligned_cols=118  Identities=17%  Similarity=0.186  Sum_probs=79.3

Q ss_pred             HHHHHHHHh---hcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975          153 EEFKMAQEY---FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (304)
Q Consensus       153 ~~~~~l~~~---l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (304)
                      ++...+..-   +...++.+||-+|.++|....+++.- ++.+.|+++|+|+...+..-...+..     .|+--+..|+
T Consensus        57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-----~NIiPIl~DA  131 (229)
T PF01269_consen   57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-----PNIIPILEDA  131 (229)
T ss_dssp             HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-----TTEEEEES-T
T ss_pred             HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-----CceeeeeccC
Confidence            444455433   33457889999999999999999987 66789999999997655554433332     6888889998


Q ss_pred             CCCC---CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          229 CRLP---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       229 ~~lp---~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ....   .--+.+|+|++.-.  +-.+..-++.++...||+||.++++.-.+
T Consensus       132 r~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~  181 (229)
T PF01269_consen  132 RHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKAR  181 (229)
T ss_dssp             TSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             CChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEecC
Confidence            6521   11347999988532  11223356788888999999999987654

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.92  E-value=1.4e-05  Score=75.15  Aligned_cols=115  Identities=13%  Similarity=0.183  Sum_probs=82.9

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (304)
                      ...+.+...+.+......+..+||+.||+|.++..+++...  .|+|+|+++++++.|+.+.+.++   ..|.+|+++-+
T Consensus       366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~Ng---isNa~Fi~gqa  440 (534)
T KOG2187|consen  366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQING---ISNATFIVGQA  440 (534)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcC---ccceeeeecch
Confidence            33445566777777777788999999999999999999876  99999999999999999999987   48999999966


Q ss_pred             CCCC--CCCC---ccceEEecchhccCCCH------HHHHHHHHHhcccCcEEEEEEe
Q 021975          229 CRLP--FASG---FVDAVHAGAALHCWPSP------SNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       229 ~~lp--~~~~---~fD~V~~~~vl~h~~d~------~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +++-  +-+.   +=++|..       -||      ..++..+.+.-++--.++++..
T Consensus       441 E~~~~sl~~~~~~~~~~v~i-------iDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn  491 (534)
T KOG2187|consen  441 EDLFPSLLTPCCDSETLVAI-------IDPPRKGLHMKVIKALRAYKNPRRLVYVSCN  491 (534)
T ss_pred             hhccchhcccCCCCCceEEE-------ECCCcccccHHHHHHHHhccCccceEEEEcC
Confidence            6531  1111   1232222       133      2466666666657666666554

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.92  E-value=7.7e-05  Score=67.00  Aligned_cols=88  Identities=10%  Similarity=0.153  Sum_probs=70.5

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (304)
                      +.+.+.+.+...+++.++|.-+|.|..+..+.+..+.++|+|+|.++.+++.++++++...    .++.++++++.++. 
T Consensus         8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~----~R~~~i~~nF~~l~~   83 (305)
T TIGR00006         8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE----GRVVLIHDNFANFFE   83 (305)
T ss_pred             hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC----CcEEEEeCCHHHHHH
Confidence            3445556666677889999999999999999988545899999999999999999887543    68999999987753 


Q ss_pred             ----CCCCccceEEecc
Q 021975          233 ----FASGFVDAVHAGA  245 (304)
Q Consensus       233 ----~~~~~fD~V~~~~  245 (304)
                          ....++|.|++..
T Consensus        84 ~l~~~~~~~vDgIl~DL  100 (305)
T TIGR00006        84 HLDELLVTKIDGILVDL  100 (305)
T ss_pred             HHHhcCCCcccEEEEec
Confidence                1235789998843

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.71  E-value=0.00018  Score=56.96  Aligned_cols=83  Identities=20%  Similarity=0.324  Sum_probs=59.6

Q ss_pred             eEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CCCCccceEEecchhccCC--------CHH---HHHH
Q 021975          192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAALHCWP--------SPS---NAVA  258 (304)
Q Consensus       192 ~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~--------d~~---~~l~  258 (304)
                      +|+|+|+-+.+++..+++++..+  ...++.++..+=+.+.  .+.+.+|+++.+.  -++|        .+.   .+++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~--~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~   76 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG--LEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALE   76 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC--CCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHH
Confidence            58999999999999999999988  4568999998877664  2335899988864  3443        333   5788


Q ss_pred             HHHHhcccCcEEEEEEeCCC
Q 021975          259 EISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       259 ~~~r~LkpgG~lvi~~~~~~  278 (304)
                      .+.++|+|||+++++.|...
T Consensus        77 ~al~lL~~gG~i~iv~Y~GH   96 (140)
T PF06962_consen   77 AALELLKPGGIITIVVYPGH   96 (140)
T ss_dssp             HHHHHEEEEEEEEEEE--ST
T ss_pred             HHHHhhccCCEEEEEEeCCC
Confidence            99999999999999998753

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function

Probab=97.70  E-value=1.5e-05  Score=55.39  Aligned_cols=47  Identities=28%  Similarity=0.610  Sum_probs=32.1

Q ss_pred             CcCCeeeccCCCcccccc---C---------C-------CCccccccccCceeeCCCCccccCCCC
Q 021975           56 LEGDLFSCPICYEPLIRK---G---------P-------TGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (304)
Q Consensus        56 ~~~~~l~CP~C~~~l~~~---~---------~-------~~~~~~~i~~~~l~C~~C~~~~~~~~g  102 (304)
                      ..+++++||.|+++|...   .         +       ...-...+.++.+.|+.|++.|++++|
T Consensus         3 ~llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG   68 (68)
T PF03966_consen    3 LLLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG   68 (68)
T ss_dssp             GGCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred             hHHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence            457889999999988000   0         0       000114567799999999999999886

The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.66  E-value=9.7e-06  Score=61.41  Aligned_cols=100  Identities=17%  Similarity=0.236  Sum_probs=42.8

Q ss_pred             EEEcCCccHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCCCccceEEecc
Q 021975          171 VDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAGA  245 (304)
Q Consensus       171 LDiGcG~G~~~~~l~~~~~~---~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~~~~  245 (304)
                      ||||+..|..+..+++....   .+++++|..+. .+..++.++..+  ...+++++.++..+.  .++.++||+|+.-.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~--~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG--LSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             --------------------------EEEESS-------------GG--G-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC--CCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence            68999999988887765322   37999999995 333444444333  346799999998543  13357899999865


Q ss_pred             hhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          246 ALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      . |..+.....++.+.+.|+|||++++-+
T Consensus        78 ~-H~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   78 D-HSYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             C-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            2 111233456888999999999998754

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.66  E-value=0.00018  Score=59.20  Aligned_cols=100  Identities=16%  Similarity=0.156  Sum_probs=70.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc-cCCCC--------CC
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRL--------PF  233 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~l--------p~  233 (304)
                      ..++.+|||+||..|.|+.-..++ +|++-|.|+|+-.-.              ...++.++++ |+.+.        .+
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------------p~~Ga~~i~~~dvtdp~~~~ki~e~l  132 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------------PPEGATIIQGNDVTDPETYRKIFEAL  132 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------------CCCCcccccccccCCHHHHHHHHHhC
Confidence            456899999999999999988877 688999999984321              3456777776 66552        15


Q ss_pred             CCCccceEEecchhccC----CCHH-------HHHHHHHHhcccCcEEEEEEeCC
Q 021975          234 ASGFVDAVHAGAALHCW----PSPS-------NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~----~d~~-------~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++..+|+|++...-.-.    .|-.       .++.-....++|+|.++.-.|..
T Consensus       133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g  187 (232)
T KOG4589|consen  133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG  187 (232)
T ss_pred             CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence            67889999985432111    1212       23444456788999999988876

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.65  E-value=0.00029  Score=64.87  Aligned_cols=123  Identities=16%  Similarity=0.150  Sum_probs=90.8

Q ss_pred             hcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCc
Q 021975          162 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF  237 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~  237 (304)
                      +.+.++.+|||+.+..|.=+.+++..- -.+.+++.|.+..-++..+.++...|   ..+..+...|...+|   ++. +
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---v~ntiv~n~D~~ef~~~~~~~-~  312 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---VTNTIVSNYDGREFPEKEFPG-S  312 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---CCceEEEccCcccccccccCc-c
Confidence            456789999999999998776666542 23589999999999999999999987   467777788886654   444 8


Q ss_pred             cceEEec----c--hhcc----------------CCCHHHHHHHHHHhcccCcEEEEEEeCCCCCCccccccc
Q 021975          238 VDAVHAG----A--ALHC----------------WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV  288 (304)
Q Consensus       238 fD~V~~~----~--vl~h----------------~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~~~~~  288 (304)
                      ||-|+..    .  ++.-                ..-..++|.....++|+||+|+-+|..-....+.+...+
T Consensus       313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~y  385 (460)
T KOG1122|consen  313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDY  385 (460)
T ss_pred             cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHH
Confidence            9999863    2  2211                111135788888999999999999987655555555444

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.65  E-value=0.00033  Score=59.59  Aligned_cols=73  Identities=18%  Similarity=0.287  Sum_probs=56.3

Q ss_pred             EEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC-ccceEEecc
Q 021975          170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG-FVDAVHAGA  245 (304)
Q Consensus       170 vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~-~fD~V~~~~  245 (304)
                      |.||||-.|++..+|.+.+.-..++++|+++.-++.|+++++..+  ...++.+..+|.... ++.+ ..|+|+..+
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~--l~~~i~~rlgdGL~~-l~~~e~~d~ivIAG   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG--LEDRIEVRLGDGLEV-LKPGEDVDTIVIAG   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG---GGG---EEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CcccEEEEECCcccc-cCCCCCCCEEEEec
Confidence            689999999999999999877789999999999999999999988  578899999996442 2233 378777643

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.64  E-value=0.00041  Score=62.76  Aligned_cols=105  Identities=20%  Similarity=0.242  Sum_probs=79.8

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH--HhcC--ccCCCCeEEEEccCCCCC-CCCCccceE
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI--KQDN--TILTSNLALVRADVCRLP-FASGFVDAV  241 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~--~~~~--~~~~~~i~~~~~d~~~lp-~~~~~fD~V  241 (304)
                      ..++|-+|.|.|..++++.+.-...+++-+|.+|.|++.++++.  ...+  ....++++++..|+.+.- -....||+|
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v  369 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV  369 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence            46899999999999999998743569999999999999999433  2221  114578999999986642 234589999


Q ss_pred             EecchhccCCCHH----------HHHHHHHHhcccCcEEEEEEeC
Q 021975          242 HAGAALHCWPSPS----------NAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       242 ~~~~vl~h~~d~~----------~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +...     +||.          ++..-+.+.|+++|.+++..-.
T Consensus       370 IVDl-----~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags  409 (508)
T COG4262         370 IVDL-----PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS  409 (508)
T ss_pred             EEeC-----CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence            8853     4553          5778889999999998885533

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.56  E-value=0.00026  Score=58.63  Aligned_cols=114  Identities=19%  Similarity=0.255  Sum_probs=74.9

Q ss_pred             hhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHH------HHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          161 YFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLR------QCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~------~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      +....++.+|+|+=.|.|+|++.++.. ++.+.|+++-+.+...-      ..+...++.   ...++..+-.+...++ 
T Consensus        43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~---~~aN~e~~~~~~~A~~-  118 (238)
T COG4798          43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP---VYANVEVIGKPLVALG-  118 (238)
T ss_pred             EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh---hhhhhhhhCCcccccC-
Confidence            445567999999999999999999987 67668888766553111      011111111   2345566666665555 


Q ss_pred             CCCccceEEecchhcc-------CCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          234 ASGFVDAVHAGAALHC-------WPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h-------~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      +.+..|++.....-|-       -.....+.+++++.|||||++++.++...
T Consensus       119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~  170 (238)
T COG4798         119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRAD  170 (238)
T ss_pred             CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecccc
Confidence            4456777766332221       12345789999999999999999998764

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.50  E-value=2.9e-05  Score=61.80  Aligned_cols=58  Identities=26%  Similarity=0.220  Sum_probs=48.8

Q ss_pred             CeEEEEccCCCCCCCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       220 ~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .+.+++......+|.+++.|+|.+.+|+||+.-.  ..+++++++.|||||+|-++.+..
T Consensus        30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl   89 (185)
T COG4627          30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL   89 (185)
T ss_pred             ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence            4566665556678999999999999999999743  478999999999999999998765

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.49  E-value=0.00034  Score=60.59  Aligned_cols=105  Identities=17%  Similarity=0.154  Sum_probs=71.4

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (304)
                      ..+|+|||||.=.++..+....+...++|+|++..+++.....+...+    ....+...|+..-+ +....|+.+..=+
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~----~~~~~~v~Dl~~~~-~~~~~DlaLllK~  180 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG----VPHDARVRDLLSDP-PKEPADLALLLKT  180 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TTTSH-TTSEESEEEEET-
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC----CCcceeEeeeeccC-CCCCcchhhHHHH
Confidence            679999999999998888877767899999999999999999988865    67777778887654 3578999999877


Q ss_pred             hccCCCHHH-HHHHHHHhcccCcEEEEEEeCC
Q 021975          247 LHCWPSPSN-AVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       247 l~h~~d~~~-~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++.+..... .--++...++- =.++++.+.+
T Consensus       181 lp~le~q~~g~g~~ll~~~~~-~~~vVSfPtr  211 (251)
T PF07091_consen  181 LPCLERQRRGAGLELLDALRS-PHVVVSFPTR  211 (251)
T ss_dssp             HHHHHHHSTTHHHHHHHHSCE-SEEEEEEES-
T ss_pred             HHHHHHHhcchHHHHHHHhCC-CeEEEecccc
Confidence            776643321 11222333321 2455555554

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.48  E-value=0.0013  Score=52.04  Aligned_cols=142  Identities=15%  Similarity=0.175  Sum_probs=95.6

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (304)
                      +...+..+.+..++..++.++.+|+|.|.|....+.++.+ -...+|+|+++-.+.+++-..-..+  ......|..-|+
T Consensus        55 pAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g--~~k~trf~Rkdl  131 (199)
T KOG4058|consen   55 PATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG--CAKSTRFRRKDL  131 (199)
T ss_pred             CccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHh--cccchhhhhhhh
Confidence            4445667777888888887899999999999999999987 3488999999999999887766666  567788999898


Q ss_pred             CCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCCCCccccccc-cccccccccccccc
Q 021975          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV-LREDSAELQLFDRR  302 (304)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  302 (304)
                      .+..+.+  |..|+.+.+-.-++|.   -.++..-+..+..++..-+--    ..|.... +.+....+.+.|+.
T Consensus       132 wK~dl~d--y~~vviFgaes~m~dL---e~KL~~E~p~nt~vvacRFPL----P~w~leh~igeG~d~VW~Yd~n  197 (199)
T KOG4058|consen  132 WKVDLRD--YRNVVIFGAESVMPDL---EDKLRTELPANTRVVACRFPL----PTWQLEHAIGEGLDRVWAYDVN  197 (199)
T ss_pred             hhccccc--cceEEEeehHHHHhhh---HHHHHhhCcCCCeEEEEecCC----CccchHhHhhcCcceEEEEeCC
Confidence            8876654  4445554442223333   334455566677777665432    2233222 33334556655554

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.48  E-value=0.0012  Score=56.61  Aligned_cols=106  Identities=20%  Similarity=0.271  Sum_probs=74.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEE-EEccCCCCC--
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL-VRADVCRLP--  232 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~-~~~d~~~lp--  232 (304)
                      ..+..+--..++.++||||..||.|+..+.+.|. ..|+++|..-..+..--+        ..+++.. ...++..+.  
T Consensus        69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR--------~d~rV~~~E~tN~r~l~~~  139 (245)
T COG1189          69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLR--------NDPRVIVLERTNVRYLTPE  139 (245)
T ss_pred             HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHh--------cCCcEEEEecCChhhCCHH
Confidence            3444444455788999999999999999999973 699999998766655433        2344443 344554432  


Q ss_pred             -CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                       +. +..|++++.-++-   ....+|..+..+++++|-++...
T Consensus       140 ~~~-~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         140 DFT-EKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             Hcc-cCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe
Confidence             32 3678888865444   45678999999999999877654

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.46  E-value=0.0011  Score=56.14  Aligned_cols=88  Identities=15%  Similarity=0.183  Sum_probs=71.3

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      ....+..+++.  +..+.||||-.+++..+|.+.++...+++.|+++.-++.|.+++...+  ...+++...+|....--
T Consensus         6 RL~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~--l~~~i~vr~~dgl~~l~   81 (226)
T COG2384           6 RLTTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN--LSERIDVRLGDGLAVLE   81 (226)
T ss_pred             HHHHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC--CcceEEEeccCCccccC
Confidence            34456666655  455999999999999999999988899999999999999999999998  57889999999844222


Q ss_pred             CCCccceEEecc
Q 021975          234 ASGFVDAVHAGA  245 (304)
Q Consensus       234 ~~~~fD~V~~~~  245 (304)
                      .+..+|+|+..+
T Consensus        82 ~~d~~d~ivIAG   93 (226)
T COG2384          82 LEDEIDVIVIAG   93 (226)
T ss_pred             ccCCcCEEEEeC
Confidence            344789888643

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.42  E-value=0.00085  Score=59.59  Aligned_cols=123  Identities=21%  Similarity=0.203  Sum_probs=79.6

Q ss_pred             HHHHHHHhhcc----cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH---HhcC------------
Q 021975          154 EFKMAQEYFKS----AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI---KQDN------------  214 (304)
Q Consensus       154 ~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~---~~~~------------  214 (304)
                      +++.+..+++.    ....+||--|||.|.++..++..|+  ++-|=|+|--|+--..=.+   +..+            
T Consensus       134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~s  211 (369)
T KOG2798|consen  134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYS  211 (369)
T ss_pred             HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccc
Confidence            44455554443    3456899999999999999999998  7777788776643222211   1111            


Q ss_pred             --------c--------------cCCCCeEEEEccCCCC---CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcE
Q 021975          215 --------T--------------ILTSNLALVRADVCRL---PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGV  269 (304)
Q Consensus       215 --------~--------------~~~~~i~~~~~d~~~l---p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~  269 (304)
                              +              ..........||+.+.   +-..+.||+|+..+.|.--.+.-..++.|..+|||||+
T Consensus       212 n~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGv  291 (369)
T KOG2798|consen  212 NSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGV  291 (369)
T ss_pred             cccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcE
Confidence                    0              0001112223444332   11124699999988888878888999999999999999


Q ss_pred             EEEEEeCCC
Q 021975          270 FVGTTFLRY  278 (304)
Q Consensus       270 lvi~~~~~~  278 (304)
                      .+=..+.-+
T Consensus       292 WiNlGPLlY  300 (369)
T KOG2798|consen  292 WINLGPLLY  300 (369)
T ss_pred             EEeccceee
Confidence            887665543

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.31  E-value=0.0028  Score=57.72  Aligned_cols=140  Identities=19%  Similarity=0.161  Sum_probs=95.5

Q ss_pred             hhcccCCCeEEEEcCCccHHHHHHHHhCCC----CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC---
Q 021975          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTY----SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---  233 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~----~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---  233 (304)
                      .+...++.+|||+.+..|.-+.++.+....    ..|++=|.++.-+...+..+....   ..++.+...|+...|-   
T Consensus       150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~---~~~~~v~~~~~~~~p~~~~  226 (375)
T KOG2198|consen  150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP---SPNLLVTNHDASLFPNIYL  226 (375)
T ss_pred             hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC---Ccceeeecccceecccccc
Confidence            345678999999999999988888877542    389999999998888888775443   4667777777765541   


Q ss_pred             ------CCCccceEEec------chhccCCCHH-----------------HHHHHHHHhcccCcEEEEEEeCCCCCCccc
Q 021975          234 ------ASGFVDAVHAG------AALHCWPSPS-----------------NAVAEISRILRSGGVFVGTTFLRYTSSTSL  284 (304)
Q Consensus       234 ------~~~~fD~V~~~------~vl~h~~d~~-----------------~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~  284 (304)
                            ....||-|++.      .++.+-++..                 .+|..-.++||+||.++-+|..-.+..+.-
T Consensus       227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEa  306 (375)
T KOG2198|consen  227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEA  306 (375)
T ss_pred             ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHH
Confidence                  23368988873      3344433221                 468888999999999999997664433322


Q ss_pred             c-cccccccccccccccccC
Q 021975          285 T-GRVLREDSAELQLFDRRR  303 (304)
Q Consensus       285 ~-~~~~~~~~~~~~~~~~~~  303 (304)
                      + .+.++.....+++.+++.
T Consensus       307 VV~~~L~~~~~~~~lv~~~~  326 (375)
T KOG2198|consen  307 VVQEALQKVGGAVELVDVSG  326 (375)
T ss_pred             HHHHHHHHhcCcccceeecc
Confidence            2 344544555555555443

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.28  E-value=0.002  Score=57.74  Aligned_cols=79  Identities=15%  Similarity=0.140  Sum_probs=47.1

Q ss_pred             CCeEEEEcCCccHHHHHH--HHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CccCCCCeEEEEccCCC-----CCCCCCcc
Q 021975          167 GGLLVDVSCGSGLFSRKF--AKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCR-----LPFASGFV  238 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l--~~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~-----lp~~~~~f  238 (304)
                      ..++||||+|....--.|  ...++  +++|+|+++..++.|+++++.+ +  ...+|.++...-..     +...++.|
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W--~fvaTdID~~sl~~A~~nv~~N~~--L~~~I~l~~~~~~~~i~~~i~~~~e~~  178 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGW--SFVATDIDPKSLESARENVERNPN--LESRIELRKQKNPDNIFDGIIQPNERF  178 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--ST-SSTTTSTT--S-E
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCC--eEEEecCCHHHHHHHHHHHHhccc--cccceEEEEcCCccccchhhhccccee
Confidence            457999999988543222  23355  9999999999999999999998 6  56788887653222     22234689


Q ss_pred             ceEEecchhcc
Q 021975          239 DAVHAGAALHC  249 (304)
Q Consensus       239 D~V~~~~vl~h  249 (304)
                      |+.+|+--++.
T Consensus       179 dftmCNPPFy~  189 (299)
T PF05971_consen  179 DFTMCNPPFYS  189 (299)
T ss_dssp             EEEEE-----S
T ss_pred             eEEecCCcccc
Confidence            99999765554

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.25  E-value=0.004  Score=52.11  Aligned_cols=116  Identities=16%  Similarity=0.153  Sum_probs=83.3

Q ss_pred             HHHHHHHHhh---cccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC
Q 021975          153 EEFKMAQEYF---KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (304)
Q Consensus       153 ~~~~~l~~~l---~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (304)
                      ++...+..-+   +..++.+||-+|+.+|....+++.--..+.++++|+|+...+..-...+..     .|+--+..|+.
T Consensus        60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~  134 (231)
T COG1889          60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDAR  134 (231)
T ss_pred             HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccC
Confidence            3444554433   346789999999999999999998755679999999998776666555443     57888888886


Q ss_pred             CCC---CCCCccceEEecchhccCCCHH---HHHHHHHHhcccCcEEEEEEeCCC
Q 021975          230 RLP---FASGFVDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       230 ~lp---~~~~~fD~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ...   .--+.+|+|+..     +.+|.   -+..++...||+||.++++.-.+.
T Consensus       135 ~P~~Y~~~Ve~VDviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArS  184 (231)
T COG1889         135 KPEKYRHLVEKVDVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARS  184 (231)
T ss_pred             CcHHhhhhcccccEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeec
Confidence            521   112458888763     33443   367888999999998888766553

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.25  E-value=0.00052  Score=64.80  Aligned_cols=99  Identities=18%  Similarity=0.242  Sum_probs=66.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHH----HHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSEN----MLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~----~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (304)
                      .-..|+|+.+|.|.|..+|.+..    |+.+..-+.    .+....+    .|+     +..++.=.+.++.-..+||+|
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~~~~ntL~vIyd----RGL-----IG~yhDWCE~fsTYPRTYDLl  431 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPVSGPNTLPVIYD----RGL-----IGVYHDWCEAFSTYPRTYDLL  431 (506)
T ss_pred             ceeeeeeecccccHHHHHhccCC----ceEEEecccCCCCcchhhhh----ccc-----chhccchhhccCCCCcchhhe
Confidence            34569999999999999998652    444443332    2222222    111     122222224555557899999


Q ss_pred             EecchhccCC---CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          242 HAGAALHCWP---SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       242 ~~~~vl~h~~---d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++.+++.+..   +...++-|+-|+|+|||.+++-+...
T Consensus       432 HA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~  470 (506)
T PF03141_consen  432 HADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD  470 (506)
T ss_pred             ehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH
Confidence            9999887765   45678999999999999999977544

; GO: 0008168 methyltransferase activity

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.14  E-value=0.00088  Score=60.25  Aligned_cols=85  Identities=18%  Similarity=0.297  Sum_probs=62.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---  232 (304)
                      +-+.+.+...+++.++|.--|.|..+..+.+..++++++|+|-++.+++.++++++...    .++.++.+++.++.   
T Consensus        10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~----~r~~~~~~~F~~l~~~l   85 (310)
T PF01795_consen   10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD----DRFIFIHGNFSNLDEYL   85 (310)
T ss_dssp             HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC----TTEEEEES-GGGHHHHH
T ss_pred             HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc----ceEEEEeccHHHHHHHH
Confidence            34555666777889999999999999999998777899999999999999998876543    78999999987754   


Q ss_pred             --C-CCCccceEEec
Q 021975          233 --F-ASGFVDAVHAG  244 (304)
Q Consensus       233 --~-~~~~fD~V~~~  244 (304)
                        . .-..+|.|++.
T Consensus        86 ~~~~~~~~~dgiL~D  100 (310)
T PF01795_consen   86 KELNGINKVDGILFD  100 (310)
T ss_dssp             HHTTTTS-EEEEEEE
T ss_pred             HHccCCCccCEEEEc
Confidence              2 34578988874

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.12  E-value=0.0022  Score=54.25  Aligned_cols=111  Identities=11%  Similarity=0.121  Sum_probs=58.0

Q ss_pred             HhhcccCCCeEEEEcCCccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---
Q 021975          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (304)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---  232 (304)
                      +.+-..++..|+|+|.-.|..+..++..    +..++|+|+|++.....  ++..+.+.  ...+++++++|..+..   
T Consensus        26 eli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp--~~~rI~~i~Gds~d~~~~~  101 (206)
T PF04989_consen   26 ELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHP--MSPRITFIQGDSIDPEIVD  101 (206)
T ss_dssp             HHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG------TTEEEEES-SSSTHHHH
T ss_pred             HHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhcc--ccCceEEEECCCCCHHHHH
Confidence            3343445679999999999877766542    35679999999643321  22222222  3478999999987642   


Q ss_pred             -CC----CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 -FA----SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 -~~----~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                       ..    .....+|+. .+=|...+..+.|+....++++|+++++.+-
T Consensus       102 ~v~~~~~~~~~vlVil-Ds~H~~~hvl~eL~~y~plv~~G~Y~IVeDt  148 (206)
T PF04989_consen  102 QVRELASPPHPVLVIL-DSSHTHEHVLAELEAYAPLVSPGSYLIVEDT  148 (206)
T ss_dssp             TSGSS----SSEEEEE-SS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred             HHHHhhccCCceEEEE-CCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence             11    112223333 3333345567788889999999999998653

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.09  E-value=0.0075  Score=58.22  Aligned_cols=147  Identities=18%  Similarity=0.114  Sum_probs=101.4

Q ss_pred             chhhHHHHHhHHHhhh---c--CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC----CCeEEEEeCC
Q 021975          129 PFVSFLYERGWRQNFN---R--SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT----YSGVVALDFS  199 (304)
Q Consensus       129 ~~~s~~~~~~w~~~~~---~--~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~giD~s  199 (304)
                      +.+...|+..-+..-.   .  +.+++|.+..+++.+.+.+.+..+|.|..||+|.++....+...    ...++|.|++
T Consensus       144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~  223 (489)
T COG0286         144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN  223 (489)
T ss_pred             cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence            3444555554333221   1  44788999999999999876777999999999998877766531    2579999999


Q ss_pred             HHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC-----CCCccceEEecchhc---cC-------C-------------
Q 021975          200 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----ASGFVDAVHAGAALH---CW-------P-------------  251 (304)
Q Consensus       200 ~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~~~~fD~V~~~~vl~---h~-------~-------------  251 (304)
                      +.....|+.++-.++.  ...+....+|...-|.     ..+.||+|+++--+.   +.       .             
T Consensus       224 ~~t~~l~~mN~~lhgi--~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (489)
T COG0286         224 DTTYRLAKMNLILHGI--EGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTK  301 (489)
T ss_pred             HHHHHHHHHHHHHhCC--CccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCC
Confidence            9999999999988873  2245556665544342     236799998853221   11       0             


Q ss_pred             -CH-HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          252 -SP-SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       252 -d~-~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                       .. ..++..+...|+|||+..++.+..
T Consensus       302 ~~~~~af~~h~~~~l~~~g~aaivl~~g  329 (489)
T COG0286         302 NSADLAFLQHILYKLKPGGRAAIVLPDG  329 (489)
T ss_pred             CchHHHHHHHHHHhcCCCceEEEEecCC
Confidence             01 368999999999999766666544

>PRK10742 putative methyltransferase; Provisional

Probab=96.99  E-value=0.0049  Score=53.60  Aligned_cols=118  Identities=13%  Similarity=-0.024  Sum_probs=81.2

Q ss_pred             HHHHHhhcccCCC--eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc------CccCCCCeEEEEcc
Q 021975          156 KMAQEYFKSAQGG--LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD------NTILTSNLALVRAD  227 (304)
Q Consensus       156 ~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~~~~~~i~~~~~d  227 (304)
                      +.+.+.+...++.  +|||.-+|.|..+..++..|.  +|+++|-++.+....++.++..      +.....+++++.+|
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d  153 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence            3455555555555  899999999999999999986  8999999999999998888763      10011468889998


Q ss_pred             CCCC-CCCCCccceEEecchhcc--------------------CCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          228 VCRL-PFASGFVDAVHAGAALHC--------------------WPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       228 ~~~l-p~~~~~fD~V~~~~vl~h--------------------~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..+. .-...+||+|++.-.+.|                    -++...+|++..++-+  -++|+-.+..
T Consensus       154 a~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~--kRVVVKrp~~  222 (250)
T PRK10742        154 SLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT--KRVVVKRPDY  222 (250)
T ss_pred             HHHHHhhCCCCCcEEEECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC--ceEEEecCCC
Confidence            8553 212347999998544433                    1233456676666655  3566655433

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.95  E-value=0.0018  Score=55.08  Aligned_cols=96  Identities=22%  Similarity=0.292  Sum_probs=69.7

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCC---------CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGT---------YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~---------~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----  232 (304)
                      -.+++|+.+..|.|+..|.++..         ...++++|+.+-+              .-+++..+++|+....     
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------------PI~GV~qlq~DIT~~stae~I  107 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------------PIEGVIQLQGDITSASTAEAI  107 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------------ccCceEEeecccCCHhHHHHH
Confidence            35799999999999999988631         1239999986532              4578999999997742     


Q ss_pred             ---CCCCccceEEecch-----hccCCCH------HHHHHHHHHhcccCcEEEEEEeC
Q 021975          233 ---FASGFVDAVHAGAA-----LHCWPSP------SNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       233 ---~~~~~fD~V~~~~v-----l~h~~d~------~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                         |.....|+|+|.+.     ||.+.+-      ..+|.-...+|||||.|+.--+.
T Consensus       108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR  165 (294)
T KOG1099|consen  108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR  165 (294)
T ss_pred             HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence               55668999999654     4443322      14566678899999999875544

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.85  E-value=0.0093  Score=53.06  Aligned_cols=87  Identities=17%  Similarity=0.282  Sum_probs=69.9

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      +.....+.+...+++..+|.--|.|..+..+.+.++ .++++|+|-++.+++.|++.+...+    .++.++++.+.++.
T Consensus        11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~----~r~~~v~~~F~~l~   86 (314)
T COG0275          11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD----GRVTLVHGNFANLA   86 (314)
T ss_pred             HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC----CcEEEEeCcHHHHH
Confidence            334455667777889999999999999999999865 4579999999999999999998765    78999999886653


Q ss_pred             -----CCCCccceEEec
Q 021975          233 -----FASGFVDAVHAG  244 (304)
Q Consensus       233 -----~~~~~fD~V~~~  244 (304)
                           ...+.+|.|+..
T Consensus        87 ~~l~~~~i~~vDGiL~D  103 (314)
T COG0275          87 EALKELGIGKVDGILLD  103 (314)
T ss_pred             HHHHhcCCCceeEEEEe
Confidence                 224578888763

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.78  E-value=0.023  Score=48.07  Aligned_cols=121  Identities=21%  Similarity=0.205  Sum_probs=69.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcC-------------------
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDN-------------------  214 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~-------------------  214 (304)
                      +.-..++....+-++.|-.||.|+++..+.-..  .-..|+|.|+++++++.|++++....                   
T Consensus        41 qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~  120 (246)
T PF11599_consen   41 QRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYG  120 (246)
T ss_dssp             HHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcC
Confidence            333344444456689999999999877665432  13489999999999999999884221                   


Q ss_pred             --------------------ccCCCCeEEEEccCCC------CCCCCCccceEEecchhcc---CCC-----H-HHHHHH
Q 021975          215 --------------------TILTSNLALVRADVCR------LPFASGFVDAVHAGAALHC---WPS-----P-SNAVAE  259 (304)
Q Consensus       215 --------------------~~~~~~i~~~~~d~~~------lp~~~~~fD~V~~~~vl~h---~~d-----~-~~~l~~  259 (304)
                                          .-......+.++|+.+      ++. ....|+|+..--.-+   |..     | ..+|..
T Consensus       121 kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~-~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~  199 (246)
T PF11599_consen  121 KPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDA-GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNS  199 (246)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHT-T---SEEEEE--CCCSSSTTS---HHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhcc-CCCCCEEEecCCCcccccccCCCCCCcHHHHHHH
Confidence                                0023346788888877      221 234699988543333   332     1 368999


Q ss_pred             HHHhcccCcEEEEEEeCC
Q 021975          260 ISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       260 ~~r~LkpgG~lvi~~~~~  277 (304)
                      ++.+|-.++++.+++-.+
T Consensus       200 l~~vLp~~sVV~v~~k~~  217 (246)
T PF11599_consen  200 LAPVLPERSVVAVSDKGR  217 (246)
T ss_dssp             HHCCS-TT-EEEEEESSS
T ss_pred             HHhhCCCCcEEEEecCCc
Confidence            999996566666654433

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.68  E-value=0.02  Score=49.91  Aligned_cols=111  Identities=16%  Similarity=0.067  Sum_probs=72.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc---CCCCeEEEEccCCC---CCCCCCc-c
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCR---LPFASGF-V  238 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~~~~i~~~~~d~~~---lp~~~~~-f  238 (304)
                      ....||++|.|+|..+..++... ..+|+-.|+.. .+.....+....+..   ....+.+...+-..   ..+.... |
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~  163 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF  163 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh-cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence            35679999999997777777753 34888888644 333333332221110   11233333333222   1122233 9


Q ss_pred             ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      |+|++..++.+-..+..++.-++..|..+|++++.++.+.
T Consensus       164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~  203 (248)
T KOG2793|consen  164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR  203 (248)
T ss_pred             cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence            9999999999888888899999999999998888888774

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.65  E-value=0.087  Score=45.60  Aligned_cols=105  Identities=16%  Similarity=0.148  Sum_probs=61.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CCC-CCCccceEE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF-ASGFVDAVH  242 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~-~~~~fD~V~  242 (304)
                      ..+++||=+|=.. ..+.+++..+...+++.+|+++..+++.++..+..+    -.++.+..|+.+ +|- -.++||+++
T Consensus        43 L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g----l~i~~~~~DlR~~LP~~~~~~fD~f~  117 (243)
T PF01861_consen   43 LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG----LPIEAVHYDLRDPLPEELRGKFDVFF  117 (243)
T ss_dssp             STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSEEE
T ss_pred             ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC----CceEEEEecccccCCHHHhcCCCEEE
Confidence            3578999999443 334445555556799999999999999999999887    349999999965 331 147999999


Q ss_pred             ecc--hhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          243 AGA--ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       243 ~~~--vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..-  .++   -..-+++.....||..|......+..
T Consensus       118 TDPPyT~~---G~~LFlsRgi~~Lk~~g~~gy~~~~~  151 (243)
T PF01861_consen  118 TDPPYTPE---GLKLFLSRGIEALKGEGCAGYFGFTH  151 (243)
T ss_dssp             E---SSHH---HHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred             eCCCCCHH---HHHHHHHHHHHHhCCCCceEEEEEec
Confidence            832  111   11357888889999877444444444

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.55  E-value=0.012  Score=53.28  Aligned_cols=112  Identities=15%  Similarity=0.065  Sum_probs=71.9

Q ss_pred             cccCCCeEEEEcCCccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC----CCCCCCCCc
Q 021975          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV----CRLPFASGF  237 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~----~~lp~~~~~  237 (304)
                      ..-...+|||+|.|.|.-+.++....|+ ..++-++.|+..-+..........   .....+-..|+    ..+|. ...
T Consensus       110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~---t~~td~r~s~vt~dRl~lp~-ad~  185 (484)
T COG5459         110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS---TEKTDWRASDVTEDRLSLPA-ADL  185 (484)
T ss_pred             CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc---cccCCCCCCccchhccCCCc-cce
Confidence            3345668999999999998888877663 367778888876655554332221   12222222333    23332 345


Q ss_pred             cceEEecchhccCCCHH---HHHHHHHHhcccCcEEEEEEeCCC
Q 021975          238 VDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      |++|+..+-|-|..++.   ..++.+..++.|||.|++++.+.+
T Consensus       186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            77776665554444332   478999999999999999998764

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=96.53  E-value=0.013  Score=54.46  Aligned_cols=112  Identities=16%  Similarity=0.166  Sum_probs=66.3

Q ss_pred             CCeEEEEcCCccHHHHHHHH--------h-------CCCCeEEEEeCCHHHHHHHHHHHHhcC---------cc-CCCC-
Q 021975          167 GGLLVDVSCGSGLFSRKFAK--------S-------GTYSGVVALDFSENMLRQCYDFIKQDN---------TI-LTSN-  220 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~--------~-------~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~-~~~~-  220 (304)
                      ..+|+|+|||+|.++..+..        +       .|..+|+.-|.-.+--...-+.+....         +. ...+ 
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            56899999999977644421        1       124577777754322111111111100         00 0001 


Q ss_pred             --eEEEEccCCCCCCCCCccceEEecchhccCCCH--------------------------------------HHHHHHH
Q 021975          221 --LALVRADVCRLPFASGFVDAVHAGAALHCWPSP--------------------------------------SNAVAEI  260 (304)
Q Consensus       221 --i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--------------------------------------~~~l~~~  260 (304)
                        +.-+.+.+..--||.++.+++++...||++...                                      ..+|+.=
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R  223 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR  223 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              223334554445889999999999999887631                                      1234444


Q ss_pred             HHhcccCcEEEEEEeCCC
Q 021975          261 SRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       261 ~r~LkpgG~lvi~~~~~~  278 (304)
                      .+-|+|||+++++..++.
T Consensus       224 a~ELvpGG~mvl~~~Gr~  241 (386)
T PLN02668        224 AQEMKRGGAMFLVCLGRT  241 (386)
T ss_pred             HHHhccCcEEEEEEecCC
Confidence            667999999999998885

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.42  E-value=0.0037  Score=46.88  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=28.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCC
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS  199 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s  199 (304)
                      +....+|||||+|.+..-|...|.  .-+|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence            455799999999999999999988  89999974

; GO: 0008168 methyltransferase activity

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.39  E-value=0.042  Score=53.12  Aligned_cols=100  Identities=22%  Similarity=0.223  Sum_probs=68.2

Q ss_pred             cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-----------CC
Q 021975          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-----------LP  232 (304)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-----------lp  232 (304)
                      .++.+|+-+|+|. |......++.. +.+|+++|.+++.++.+++.          +.+++..+..+           +.
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl----------GA~~v~i~~~e~~~~~~gya~~~s  231 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM----------GAEFLELDFEEEGGSGDGYAKVMS  231 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEEeccccccccccchhhhcc
Confidence            4688999999997 66666666653 34899999999999988872          22322211111           00


Q ss_pred             ----------CCC--CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 ----------FAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ----------~~~--~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                                +.+  ..+|+|+.......-+.|..+.+++.+.+||||+++....
T Consensus       232 ~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        232 EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                      011  3689999877654444565556999999999999887665

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.22  E-value=0.038  Score=50.44  Aligned_cols=97  Identities=21%  Similarity=0.260  Sum_probs=66.9

Q ss_pred             cccCCCeEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc-cCCCCCCCCCccce
Q 021975          163 KSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDA  240 (304)
Q Consensus       163 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~  240 (304)
                      ...++.+|+=+|+| -|....++++.. ..+|+++|.+++-.+.|++.-        .. .++.. |.....--.+.||+
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lG--------Ad-~~i~~~~~~~~~~~~~~~d~  232 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLG--------AD-HVINSSDSDALEAVKEIADA  232 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhC--------Cc-EEEEcCCchhhHHhHhhCcE
Confidence            34578899999988 345677777753 259999999999999998832        22 23332 22222111224999


Q ss_pred             EEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      |+..-.       ...+....+.||+||++++.-..
T Consensus       233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         233 IIDTVG-------PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             EEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence            988653       44688899999999999998766

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.20  E-value=0.022  Score=49.25  Aligned_cols=117  Identities=17%  Similarity=0.107  Sum_probs=64.4

Q ss_pred             HHHHhhcccCC--CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccC------CCCeEEEEccC
Q 021975          157 MAQEYFKSAQG--GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL------TSNLALVRADV  228 (304)
Q Consensus       157 ~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~------~~~i~~~~~d~  228 (304)
                      .+.+.....++  .+|||.-+|-|..+..++..|.  +|+++|-|+-+....++-++......      ..+++++.+|.
T Consensus        64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~  141 (234)
T PF04445_consen   64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA  141 (234)
T ss_dssp             HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred             HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence            34444543333  4899999999999998888776  99999999976655554432211001      14799999998


Q ss_pred             CC-CCCCCCccceEEecchhccCC--------------------CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          229 CR-LPFASGFVDAVHAGAALHCWP--------------------SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       229 ~~-lp~~~~~fD~V~~~~vl~h~~--------------------d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .+ +..++.+||+|.+.-.+.|-.                    +..++|++..++-+  -++|+-.+..
T Consensus       142 ~~~L~~~~~s~DVVY~DPMFp~~~ksa~vkk~m~~lr~L~~~d~~~~ell~~Alr~Ar--~RVVvKrp~~  209 (234)
T PF04445_consen  142 LEYLRQPDNSFDVVYFDPMFPERKKSALVKKEMRVLRDLAGHDPDAEELLEEALRVAR--KRVVVKRPRK  209 (234)
T ss_dssp             CCHCCCHSS--SEEEE--S-----TTTT-SHHHHHHHHHHSHHTTGGGGHHHHHHH-S--SEEEEEEETT
T ss_pred             HHHHhhcCCCCCEEEECCCCCCcccccccccchHHHHHhhccCcCHHHHHHHHHHhcC--cEEEEecCCC
Confidence            76 445578999999966655521                    11234555555554  4777776554

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.05  E-value=0.096  Score=48.94  Aligned_cols=105  Identities=17%  Similarity=0.208  Sum_probs=69.4

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-C-----CC-
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-----PF-  233 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-----p~-  233 (304)
                      ....++.+||.+|||. |..+..+++.....+++++|.+++..+.+++..         ...++...-.+ .     .+ 
T Consensus       180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~~~~  250 (386)
T cd08283         180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALRELT  250 (386)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHHHHc
Confidence            3445678999999988 888888888753336999999999988888731         12222211110 0     11 


Q ss_pred             CCCccceEEecch-----------hccC----CCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          234 ASGFVDAVHAGAA-----------LHCW----PSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       234 ~~~~fD~V~~~~v-----------l~h~----~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ....+|+|+..-.           +.|.    .++...+.++.+.|+++|.+++...
T Consensus       251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            2236898877421           1122    4556789999999999999988754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=96.04  E-value=0.0054  Score=49.46  Aligned_cols=45  Identities=20%  Similarity=0.308  Sum_probs=38.1

Q ss_pred             CCccceEEecchhccCC-----CH------HHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          235 SGFVDAVHAGAALHCWP-----SP------SNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~-----d~------~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      .++||++.+.+++||+.     ||      .+.+.++.++||+||.|++..+...+
T Consensus        61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d  116 (177)
T PF03269_consen   61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD  116 (177)
T ss_pred             hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence            46899999999999974     33      26789999999999999999998753

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=95.81  E-value=0.068  Score=49.05  Aligned_cols=111  Identities=21%  Similarity=0.100  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHh--------C--------CCCeEEEEeCCHH-HHHHHHH------HHHhcCccCCCCeE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKS--------G--------TYSGVVALDFSEN-MLRQCYD------FIKQDNTILTSNLA  222 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~--------~--------~~~~v~giD~s~~-~~~~a~~------~~~~~~~~~~~~i~  222 (304)
                      ..-+|+|+||..|..+..+...        .        +..+|+--|.-.+ .-...+.      .....+   .--+.
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~---~~f~~   92 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR---NYFVS   92 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT---SEEEE
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc---eEEEE
Confidence            4568999999999987665431        1        1247888885322 1111111      111111   12244


Q ss_pred             EEEccCCCCCCCCCccceEEecchhccCCCH------------------------H---------------HHHHHHHHh
Q 021975          223 LVRADVCRLPFASGFVDAVHAGAALHCWPSP------------------------S---------------NAVAEISRI  263 (304)
Q Consensus       223 ~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~------------------------~---------------~~l~~~~r~  263 (304)
                      -+.+.+..--||+++.|++++...||++...                        .               .+|+.=++-
T Consensus        93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E  172 (334)
T PF03492_consen   93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE  172 (334)
T ss_dssp             EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            5567776656889999999999999887521                        1               234445668


Q ss_pred             cccCcEEEEEEeCCCC
Q 021975          264 LRSGGVFVGTTFLRYT  279 (304)
Q Consensus       264 LkpgG~lvi~~~~~~~  279 (304)
                      |+|||++++...++..
T Consensus       173 Lv~GG~mvl~~~gr~~  188 (334)
T PF03492_consen  173 LVPGGRMVLTFLGRDE  188 (334)
T ss_dssp             EEEEEEEEEEEEE-ST
T ss_pred             eccCcEEEEEEeeccc
Confidence            9999999999988854

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=95.74  E-value=0.05  Score=50.74  Aligned_cols=102  Identities=17%  Similarity=0.193  Sum_probs=75.2

Q ss_pred             CCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCC-CeEEEEccCCCCC-CCCCccceEEe
Q 021975          167 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRLP-FASGFVDAVHA  243 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~-~i~~~~~d~~~lp-~~~~~fD~V~~  243 (304)
                      ..+|||.=+|+|-=+..++.. ....+|+.-|+|+++++..+++++.++.  .. .+.+...|+..+- .....||+|=.
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~~~~fD~IDl  127 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSRQERFDVIDL  127 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhccccCCEEEe
Confidence            458999999999876666665 3346999999999999999999999984  44 6888888886542 24678999976


Q ss_pred             cchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      .    -+..|..+|+.+.+.+|.||.|.++.
T Consensus       128 D----PfGSp~pfldsA~~~v~~gGll~vTa  154 (377)
T PF02005_consen  128 D----PFGSPAPFLDSALQAVKDGGLLCVTA  154 (377)
T ss_dssp             ------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             C----CCCCccHhHHHHHHHhhcCCEEEEec
Confidence            3    23467889999999999999988865

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.72  E-value=0.13  Score=47.51  Aligned_cols=99  Identities=24%  Similarity=0.215  Sum_probs=68.6

Q ss_pred             CCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC-C-----CCCCC-Cc
Q 021975          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-R-----LPFAS-GF  237 (304)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~-----lp~~~-~~  237 (304)
                      ++.+|+-+|||+ |.++..+++.....+++.+|.++.-++.|++....         ..+..... +     ..... ..
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---------~~~~~~~~~~~~~~~~~~t~g~g  238 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---------DVVVNPSEDDAGAEILELTGGRG  238 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---------eEeecCccccHHHHHHHHhCCCC
Confidence            445999999997 87777777775567999999999999999884322         11111111 1     01112 36


Q ss_pred             cceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      +|+++-.-.      -..++..+.+++++||.+++.......
T Consensus       239 ~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         239 ADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             CCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence            898886543      234789999999999999887766533

>PRK11524 putative methyltransferase; Provisional

Probab=95.68  E-value=0.048  Score=48.89  Aligned_cols=59  Identities=14%  Similarity=0.167  Sum_probs=48.0

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh
Q 021975          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  212 (304)
                      +.++.+.+..... .++..|||.=||+|..+.+..+.+-  +++|+|++++.++.|++++..
T Consensus       194 P~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        194 PEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             hHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence            3455555554433 4688999999999999998888876  999999999999999998754

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=95.67  E-value=0.032  Score=49.50  Aligned_cols=105  Identities=13%  Similarity=0.190  Sum_probs=79.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-ccCCCCeEEEEccCCCC--CCCCCccceE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL--PFASGFVDAV  241 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l--p~~~~~fD~V  241 (304)
                      .+.+++|-||.|.|.+++...++-.-.++.-+|++...++..++.+.... -+..+++.+.-+|...+  ....++||+|
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi  199 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI  199 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence            35679999999999999988887434588999999999999988775422 12457788888887443  1347899999


Q ss_pred             EecchhccCCCH---------HHHHHHHHHhcccCcEEEEEE
Q 021975          242 HAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       242 ~~~~vl~h~~d~---------~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +.--     .||         ..++.-+.+.||+||+++...
T Consensus       200 i~ds-----sdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  200 ITDS-----SDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             EEec-----CCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            8732     233         257888999999999988754

>PRK00420 hypothetical protein; Validated

Probab=95.66  E-value=0.0066  Score=46.10  Aligned_cols=32  Identities=28%  Similarity=0.501  Sum_probs=24.9

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccccCCC
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~  101 (304)
                      .-.||+||.++.....          +...|+.||..+...+
T Consensus        23 ~~~CP~Cg~pLf~lk~----------g~~~Cp~Cg~~~~v~~   54 (112)
T PRK00420         23 SKHCPVCGLPLFELKD----------GEVVCPVHGKVYIVKS   54 (112)
T ss_pred             cCCCCCCCCcceecCC----------CceECCCCCCeeeecc
Confidence            3689999999987332          7899999998775543

>PHA01634 hypothetical protein

Probab=95.58  E-value=0.089  Score=40.86  Aligned_cols=48  Identities=19%  Similarity=0.098  Sum_probs=42.6

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN  214 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~  214 (304)
                      .+++|+|||.+.|..+..++-+|. ..|+++|+++...+..+++++.+.
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~nn   75 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAYFN   75 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhhhe
Confidence            578999999999999999999884 699999999999999999876543

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.54  E-value=0.036  Score=48.72  Aligned_cols=46  Identities=11%  Similarity=0.146  Sum_probs=35.7

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHHHh
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIKQ  212 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~giD~s~~~~~~a~~~~~~  212 (304)
                      ..+|+|+|+|+|.++..+.+...        ..+++-+|+|+.+.+.-++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            46899999999999888776421        35899999999999888888765

; PDB: 4F3N_A 1ZKD_B.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.53  E-value=0.16  Score=46.58  Aligned_cols=101  Identities=17%  Similarity=0.233  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC-CCccceEEecc
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA  245 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~  245 (304)
                      ..+|||.=+|+|-=+..++...+..+++.-|+||.+++.++++++.+.   ..+...+..|+..+-.. ...||+|=.  
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~---~~~~~v~n~DAN~lm~~~~~~fd~IDi--  127 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS---GEDAEVINKDANALLHELHRAFDVIDI--  127 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC---cccceeecchHHHHHHhcCCCccEEec--
Confidence            679999999999888777777655589999999999999999998873   24556666676544221 367887754  


Q ss_pred             hhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          246 ALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                        .-+..|..+++...+.++.||+|-++-
T Consensus       128 --DPFGSPaPFlDaA~~s~~~~G~l~vTA  154 (380)
T COG1867         128 --DPFGSPAPFLDAALRSVRRGGLLCVTA  154 (380)
T ss_pred             --CCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence              233467789999999999999887754

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.51  E-value=0.16  Score=45.79  Aligned_cols=102  Identities=19%  Similarity=0.162  Sum_probs=70.1

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC--CCC------CCC
Q 021975          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL------PFA  234 (304)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~l------p~~  234 (304)
                      ...+.+||-+|+|+ |..+...++...-.+|+.+|+++..++.|++ +..      ..+.......  ..+      -+.
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga------~~~~~~~~~~~~~~~~~~v~~~~g  239 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA------TVTDPSSHKSSPQELAELVEKALG  239 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC------eEEeeccccccHHHHHHHHHhhcc
Confidence            35688999999997 7777777777546799999999999999998 321      1122211111  000      122


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ...+|+.+..-.+      +..++.....+|.||+++++.+...
T Consensus       240 ~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~  277 (354)
T KOG0024|consen  240 KKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAE  277 (354)
T ss_pred             ccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCC
Confidence            3458888765433      3457778889999999999988774

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.50  E-value=0.054  Score=46.13  Aligned_cols=57  Identities=16%  Similarity=0.198  Sum_probs=42.3

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~  208 (304)
                      ..+.++.+.+..... .++..|||.=||+|..+.+..+.+-  +.+|+|+++..++.|++
T Consensus       175 ~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  175 QKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence            345566666665544 3588999999999999999998887  99999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=95.39  E-value=0.0086  Score=36.09  Aligned_cols=35  Identities=20%  Similarity=0.533  Sum_probs=24.0

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      .+.||.|+..+...+.. +  + .....++|+.|++.|.
T Consensus         2 ~i~CP~C~~~f~v~~~~-l--~-~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    2 IITCPNCQTRFRVPDDK-L--P-AGGRKVRCPKCGHVFR   36 (37)
T ss_pred             EEECCCCCceEEcCHHH-c--c-cCCcEEECCCCCcEee
Confidence            57899999987664321 1  0 1125899999999874

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=95.36  E-value=0.0095  Score=35.09  Aligned_cols=30  Identities=37%  Similarity=0.723  Sum_probs=16.0

Q ss_pred             eccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (304)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (304)
                      -||.||+++....+.+.+     ...+.|+.||.+
T Consensus         2 fC~~CG~~l~~~ip~gd~-----r~R~vC~~Cg~I   31 (34)
T PF14803_consen    2 FCPQCGGPLERRIPEGDD-----RERLVCPACGFI   31 (34)
T ss_dssp             B-TTT--B-EEE--TT-S-----S-EEEETTTTEE
T ss_pred             ccccccChhhhhcCCCCC-----ccceECCCCCCE
Confidence            399999998775543221     257899999875

>PRK13699 putative methylase; Provisional

Probab=95.31  E-value=0.098  Score=45.28  Aligned_cols=62  Identities=18%  Similarity=0.213  Sum_probs=49.6

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD  213 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  213 (304)
                      ..+.++.+.+..... .++..|||.=||+|..+.+..+.+-  +++|+|+++...+.+.++++..
T Consensus       147 ~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        147 EKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHHH
Confidence            345556665554443 3688999999999999999888876  9999999999999999988653

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.26  E-value=0.085  Score=50.38  Aligned_cols=107  Identities=9%  Similarity=0.189  Sum_probs=77.8

Q ss_pred             CCeEEEEcCCccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEE
Q 021975          167 GGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (304)
                      ..+|+-+|+|-|.+.....+.    ....+++++|-+|.++...+.+ ....  ...+++++..|+..++-+..+.|+++
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~--W~~~Vtii~~DMR~w~ap~eq~DI~V  444 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFEC--WDNRVTIISSDMRKWNAPREQADIIV  444 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhh--hcCeeEEEeccccccCCchhhccchH
Confidence            346889999999887655443    2245899999999998887662 2222  45789999999999885557889888


Q ss_pred             ecchhccCCCH---HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          243 AGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       243 ~~~vl~h~~d~---~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +- .|..+.|-   .+-|..+.+.|||+|+.+=..+.+
T Consensus       445 SE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtS  481 (649)
T KOG0822|consen  445 SE-LLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTS  481 (649)
T ss_pred             HH-hhccccCccCCHHHHHHHHhhcCCCceEccchhhh
Confidence            62 23333332   367999999999999887666555

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=95.25  E-value=0.085  Score=45.48  Aligned_cols=105  Identities=21%  Similarity=0.293  Sum_probs=70.7

Q ss_pred             cccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCcc
Q 021975          163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFV  238 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~f  238 (304)
                      ...++.+||-+|+++|....+...- +|..-|+++|+|+..=+....-.+ .    -.|+.-+.-|+....   ..-.-+
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk-k----RtNiiPIiEDArhP~KYRmlVgmV  227 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK-K----RTNIIPIIEDARHPAKYRMLVGMV  227 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh-c----cCCceeeeccCCCchheeeeeeeE
Confidence            4567999999999999999888887 888899999999854333222111 1    256766777775421   112356


Q ss_pred             ceEEecchhccCCCHH--H-HHHHHHHhcccCcEEEEEEeCC
Q 021975          239 DAVHAGAALHCWPSPS--N-AVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~--~-~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      |+|++.     ++.|+  . +.-+....||+||.++++.-..
T Consensus       228 DvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvisikan  264 (317)
T KOG1596|consen  228 DVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVISIKAN  264 (317)
T ss_pred             EEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence            777763     33343  2 3446677999999999977554

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=95.24  E-value=0.63  Score=40.49  Aligned_cols=111  Identities=21%  Similarity=0.241  Sum_probs=73.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CC-CCCCcc
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-FASGFV  238 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-~~~~~f  238 (304)
                      ..+.+.+|+|.|+..-++.|.+.    +.-..++.+|+|...++...+.+...-  ..-.+.-+++|.+. +. .+...-
T Consensus        77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y--~~l~v~~l~~~~~~~La~~~~~~~  154 (321)
T COG4301          77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY--PGLEVNALCGDYELALAELPRGGR  154 (321)
T ss_pred             hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC--CCCeEeehhhhHHHHHhcccCCCe
Confidence            34678999999998877666654    334689999999998887666555433  34556667777643 11 122222


Q ss_pred             c-eEEecchhccCC-CH-HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          239 D-AVHAGAALHCWP-SP-SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       239 D-~V~~~~vl~h~~-d~-~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      - .++..-.|..+. ++ ..++..+...|+||-.+++.+-..
T Consensus       155 Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~  196 (321)
T COG4301         155 RLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLR  196 (321)
T ss_pred             EEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecccc
Confidence            2 333445566653 22 468999999999999988765443

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=95.15  E-value=0.027  Score=36.90  Aligned_cols=31  Identities=23%  Similarity=0.582  Sum_probs=23.0

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ++.||.|+..+.....      .. ...+.|+.||..+
T Consensus         2 ~~~CP~CG~~iev~~~------~~-GeiV~Cp~CGael   32 (54)
T TIGR01206         2 QFECPDCGAEIELENP------EL-GELVICDECGAEL   32 (54)
T ss_pred             ccCCCCCCCEEecCCC------cc-CCEEeCCCCCCEE
Confidence            4789999998866332      11 3467999999987

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]

Probab=94.84  E-value=0.015  Score=45.23  Aligned_cols=30  Identities=30%  Similarity=0.511  Sum_probs=24.0

Q ss_pred             cCCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      .|-...||.||.||....           |.+.|+.|++..
T Consensus        25 kML~~hCp~Cg~PLF~Kd-----------G~v~CPvC~~~~   54 (131)
T COG1645          25 KMLAKHCPKCGTPLFRKD-----------GEVFCPVCGYRE   54 (131)
T ss_pred             HHHHhhCcccCCcceeeC-----------CeEECCCCCceE
Confidence            344567999999998844           899999999643

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=94.81  E-value=0.017  Score=31.79  Aligned_cols=24  Identities=25%  Similarity=0.647  Sum_probs=19.3

Q ss_pred             eccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      .||.|+.....             ..-.|+.||+.|.
T Consensus         2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECGAEVPE-------------SAKFCPHCGYDFE   25 (26)
T ss_pred             cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence            59999998755             4678999998773

Several members are annotated as putative helicases.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=94.80  E-value=0.029  Score=35.55  Aligned_cols=31  Identities=16%  Similarity=0.386  Sum_probs=23.5

Q ss_pred             CCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      |..+.||.||..+......         ..++|+.||...
T Consensus         1 ~~~y~C~~CG~~~~~~~~~---------~~~~Cp~CG~~~   31 (46)
T PRK00398          1 MAEYKCARCGREVELDEYG---------TGVRCPYCGYRI   31 (46)
T ss_pred             CCEEECCCCCCEEEECCCC---------CceECCCCCCeE
Confidence            3568999999988765421         378999999765

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.76  E-value=0.13  Score=44.17  Aligned_cols=98  Identities=15%  Similarity=0.171  Sum_probs=62.5

Q ss_pred             CCcHHHHHHHHHhhcc------cCCCeEEEEcCCccHH--HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCC
Q 021975          149 PGPDEEFKMAQEYFKS------AQGGLLVDVSCGSGLF--SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN  220 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~------~~~~~vLDiGcG~G~~--~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~  220 (304)
                      |+....+.++.+++..      .++.++||||.|.-..  +.-..+.++  +++|.|+++..++.|+..+..+.. ....
T Consensus        55 PgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw--rfvGseid~~sl~sA~~ii~~N~~-l~~~  131 (292)
T COG3129          55 PGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW--RFVGSEIDSQSLSSAKAIISANPG-LERA  131 (292)
T ss_pred             CChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc--eeecCccCHHHHHHHHHHHHcCcc-hhhh
Confidence            4444555566666543      2456799999887543  222334455  999999999999999999987721 2334


Q ss_pred             eEEEEccCCCC-----CCCCCccceEEecchhcc
Q 021975          221 LALVRADVCRL-----PFASGFVDAVHAGAALHC  249 (304)
Q Consensus       221 i~~~~~d~~~l-----p~~~~~fD~V~~~~vl~h  249 (304)
                      +++....-.+-     --.++.||+++|+--+|.
T Consensus       132 I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~  165 (292)
T COG3129         132 IRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD  165 (292)
T ss_pred             eeEEeccCccccccccccccceeeeEecCCCcch
Confidence            44443322221     122678999999876664

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=94.70  E-value=0.04  Score=48.64  Aligned_cols=108  Identities=15%  Similarity=0.109  Sum_probs=65.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH---------hcCccCCCCeEEEEccCCCCC-CC
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK---------QDNTILTSNLALVRADVCRLP-FA  234 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~---------~~~~~~~~~i~~~~~d~~~lp-~~  234 (304)
                      ..+++|||+|||.|.-.......+ ...++-.|++...++.-.--..         ...  ...-..+...+..+.- ..
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e--~~~~~~i~~s~l~dg~~~~  191 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKE--NHKVDEILNSLLSDGVFNH  191 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhc-cceeeeEecchhheeeecccceecchhhhhhhhh--cccceeccccccccchhhh
Confidence            357899999999999888888776 2588888888877632111000         000  0011112222111111 11


Q ss_pred             CC--ccceEEecchhccCCCHHHH-HHHHHHhcccCcEEEEEEe
Q 021975          235 SG--FVDAVHAGAALHCWPSPSNA-VAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 ~~--~fD~V~~~~vl~h~~d~~~~-l~~~~r~LkpgG~lvi~~~  275 (304)
                      .+  .||+|.+...+........+ .-....+++++|+++++.-
T Consensus       192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK  235 (282)
T KOG2920|consen  192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAK  235 (282)
T ss_pred             ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhH
Confidence            23  78999998888777666655 6667778899998877653

>PHA00626 hypothetical protein

Probab=94.62  E-value=0.022  Score=37.06  Aligned_cols=33  Identities=27%  Similarity=0.485  Sum_probs=20.8

Q ss_pred             eeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      +.||.||+.....-..    -...++.+.|+.||..|
T Consensus         1 m~CP~CGS~~Ivrcg~----cr~~snrYkCkdCGY~f   33 (59)
T PHA00626          1 MSCPKCGSGNIAKEKT----MRGWSDDYVCCDCGYND   33 (59)
T ss_pred             CCCCCCCCceeeeece----ecccCcceEcCCCCCee
Confidence            3699999964332100    00113789999999887

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.59  E-value=0.44  Score=43.63  Aligned_cols=96  Identities=20%  Similarity=0.274  Sum_probs=60.1

Q ss_pred             cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEE---ccCCCCCCCCCccce
Q 021975          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR---ADVCRLPFASGFVDA  240 (304)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~---~d~~~lp~~~~~fD~  240 (304)
                      .++.+||-+|+|. |.++..+++.....+++++|.+++.++.+++.    +    .. .++.   .++.......+.+|+
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----G----a~-~vi~~~~~~~~~~~~~~g~~D~  238 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----G----AD-KLVNPQNDDLDHYKAEKGYFDV  238 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----C----Cc-EEecCCcccHHHHhccCCCCCE
Confidence            3577899899864 56666667664223799999999988888762    1    11 1111   111111111235888


Q ss_pred             EEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      |+..-     ..+ ..++...+.|++||++++...
T Consensus       239 vid~~-----G~~-~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        239 SFEVS-----GHP-SSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             EEECC-----CCH-HHHHHHHHHhhcCCEEEEEcc
Confidence            77542     233 357888999999999988764

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=94.51  E-value=0.045  Score=49.54  Aligned_cols=83  Identities=20%  Similarity=0.202  Sum_probs=64.1

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHH-------HHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLR-------QCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~-------~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      +.+.....+|..|+|-=-|||.++...+..|.  -|+|.||+-.+++       ..+.++++.+. ...-+.++.+|...
T Consensus       200 ~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQYg~-~~~fldvl~~D~sn  276 (421)
T KOG2671|consen  200 MANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQYGS-SSQFLDVLTADFSN  276 (421)
T ss_pred             HhhhhccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHhCC-cchhhheeeecccC
Confidence            33444556799999999999999998888876  9999999998887       34556666663 23346788899988


Q ss_pred             CCCC-CCccceEEe
Q 021975          231 LPFA-SGFVDAVHA  243 (304)
Q Consensus       231 lp~~-~~~fD~V~~  243 (304)
                      -|+. ...||+|+|
T Consensus       277 ~~~rsn~~fDaIvc  290 (421)
T KOG2671|consen  277 PPLRSNLKFDAIVC  290 (421)
T ss_pred             cchhhcceeeEEEe
Confidence            7744 458999999

>KOG1088 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.46  E-value=0.018  Score=43.43  Aligned_cols=28  Identities=7%  Similarity=0.312  Sum_probs=24.6

Q ss_pred             ccccCceeeCCCCccccCCCCeeeeecc
Q 021975           82 AIYRSGFKCRKCDKTYSSKDNYLDLTVI  109 (304)
Q Consensus        82 ~i~~~~l~C~~C~~~~~~~~g~~~~~~~  109 (304)
                      .+.++.+.|+.||+.|++.+|+++++..
T Consensus        93 ~v~EG~l~CpetG~vfpI~~GIPNMLL~  120 (124)
T KOG1088|consen   93 DVIEGELVCPETGRVFPISDGIPNMLLS  120 (124)
T ss_pred             hhccceEecCCCCcEeecccCCcccccC
Confidence            4556899999999999999999998754

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=94.44  E-value=0.036  Score=49.20  Aligned_cols=103  Identities=18%  Similarity=0.267  Sum_probs=74.8

Q ss_pred             CCeEEEEcCCccHHHH-HHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          167 GGLLVDVSCGSGLFSR-KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~-~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      +..|+|+=+|.|+|+. .+...+ ...|+++|.+|..++..++.++.++  ...+..++.+|-.. +-++...|-|....
T Consensus       195 ~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~--V~~r~~i~~gd~R~-~~~~~~AdrVnLGL  270 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANN--VMDRCRITEGDNRN-PKPRLRADRVNLGL  270 (351)
T ss_pred             cchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcc--hHHHHHhhhccccc-cCccccchheeecc
Confidence            5789999999999998 666666 4699999999999999999998876  55566667777554 33466777777654


Q ss_pred             hhccCCCHHHHHHHHHHhcccCc--EEEEEEeCC
Q 021975          246 ALHCWPSPSNAVAEISRILRSGG--VFVGTTFLR  277 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG--~lvi~~~~~  277 (304)
                          +|.-++-.-.+..+|||.|  ++-+-....
T Consensus       271 ----lPSse~~W~~A~k~Lk~eggsilHIHenV~  300 (351)
T KOG1227|consen  271 ----LPSSEQGWPTAIKALKPEGGSILHIHENVK  300 (351)
T ss_pred             ----ccccccchHHHHHHhhhcCCcEEEEecccc
Confidence                3544555566777888854  444544443

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=94.43  E-value=0.093  Score=49.02  Aligned_cols=60  Identities=15%  Similarity=0.403  Sum_probs=50.8

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      .|||||.|||.++....+.|. -.|+++|.-..|...|++....++  ..++|.++.---.++
T Consensus        69 ~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kng--~SdkI~vInkrStev  128 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKNG--MSDKINVINKRSTEV  128 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcCC--Cccceeeecccccee
Confidence            589999999999998888884 479999999999999999999988  678888876544443

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=94.35  E-value=0.68  Score=41.79  Aligned_cols=95  Identities=18%  Similarity=0.213  Sum_probs=61.6

Q ss_pred             ccCCCeEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC------CCCCC
Q 021975          164 SAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASG  236 (304)
Q Consensus       164 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~~  236 (304)
                      ..++.+||..|+| .|..+..+++.. +.++++++.++...+.+++.    +      +..+..+-...      ....+
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~----g------~~~~~~~~~~~~~~~~~~~~~~  231 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL----G------ADEVLNSLDDSPKDKKAAGLGG  231 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh----C------CCEEEcCCCcCHHHHHHHhcCC
Confidence            4456788888876 377777777763 34899999999888877552    1      11121111110      12345


Q ss_pred             ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .+|+|+....      ....++++.+.|+++|.++....
T Consensus       232 ~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~  264 (338)
T cd08254         232 GFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL  264 (338)
T ss_pred             CceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence            6898875421      13468889999999999987654

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=94.34  E-value=0.027  Score=33.71  Aligned_cols=34  Identities=18%  Similarity=0.554  Sum_probs=23.0

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      .+.||.|+......+.. +.   -....++|+.|++.|
T Consensus         2 ~i~Cp~C~~~y~i~d~~-ip---~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    2 IITCPNCQAKYEIDDEK-IP---PKGRKVRCSKCGHVF   35 (36)
T ss_pred             EEECCCCCCEEeCCHHH-CC---CCCcEEECCCCCCEe
Confidence            57899999987654321 11   111478999999876

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.25  E-value=0.031  Score=34.85  Aligned_cols=29  Identities=28%  Similarity=0.592  Sum_probs=19.7

Q ss_pred             eeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      +.||.|++.....+.        ..+.+.|+.||.+.
T Consensus         1 m~Cp~Cg~~~~~~D~--------~~g~~vC~~CG~Vl   29 (43)
T PF08271_consen    1 MKCPNCGSKEIVFDP--------ERGELVCPNCGLVL   29 (43)
T ss_dssp             ESBTTTSSSEEEEET--------TTTEEEETTT-BBE
T ss_pred             CCCcCCcCCceEEcC--------CCCeEECCCCCCEe
Confidence            579999997633221        23788999999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=94.12  E-value=0.17  Score=45.17  Aligned_cols=68  Identities=19%  Similarity=0.273  Sum_probs=52.2

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC--CCccceEEecch
Q 021975          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGAA  246 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~~fD~V~~~~v  246 (304)
                      +++|+-||.|.+...+...| ...++++|+++.+++..+.+..        .. .+.+|+.++...  ...+|+|+...-
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~--------~~-~~~~Di~~~~~~~~~~~~D~l~~gpP   71 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFP--------NK-LIEGDITKIDEKDFIPDIDLLTGGFP   71 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCC--------CC-CccCccccCchhhcCCCCCEEEeCCC
Confidence            68999999999999998887 3468899999999988888642        11 566777766422  356999998653

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=94.11  E-value=0.38  Score=40.18  Aligned_cols=111  Identities=14%  Similarity=0.116  Sum_probs=73.7

Q ss_pred             HHhhcccCCCeEEEEcCCccHHHHHHHH----hCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--
Q 021975          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (304)
Q Consensus       159 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (304)
                      .+.+-..++..|+|+|.-.|..+..++.    .|...+|+++|++-....-+..        ..+++.|+.++-.+..  
T Consensus        62 Qellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~--------e~p~i~f~egss~dpai~  133 (237)
T COG3510          62 QELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR--------EVPDILFIEGSSTDPAIA  133 (237)
T ss_pred             HHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh--------cCCCeEEEeCCCCCHHHH
Confidence            3344445567999999999987666554    3534699999998765443332        2478999999987743  


Q ss_pred             -----CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 -----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 -----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                           ...+.--+.++-..-||.....+.|+...++|..|-++++.+-.-
T Consensus       134 eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v  183 (237)
T COG3510         134 EQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNV  183 (237)
T ss_pred             HHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccc
Confidence                 112222333444444555555677888899999999998876543

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=94.07  E-value=0.032  Score=38.88  Aligned_cols=50  Identities=16%  Similarity=0.440  Sum_probs=34.7

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeC--CCCccccCCCCeeeeeccc
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCR--KCDKTYSSKDNYLDLTVIS  110 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~--~C~~~~~~~~g~~~~~~~~  110 (304)
                      ++.||.||.......-. .-.+...+.+..|.  .||+.|...+.+...+...
T Consensus         1 mm~CP~Cg~~a~irtSr-~~s~~~~~~Y~qC~N~eCg~tF~t~es~s~tis~p   52 (72)
T PRK09678          1 MFHCPLCQHAAHARTSR-YITDTTKERYHQCQNVNCSATFITYESVQRYIVKP   52 (72)
T ss_pred             CccCCCCCCccEEEECh-hcChhhheeeeecCCCCCCCEEEEEEEEEEEEcCC
Confidence            47899999977443322 22233555678898  9999998887777776553

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=93.96  E-value=0.33  Score=44.47  Aligned_cols=50  Identities=12%  Similarity=0.147  Sum_probs=39.6

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHh----CC----CCeEEEEeCCHHHHHHHHHHHHhc
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKS----GT----YSGVVALDFSENMLRQCYDFIKQD  213 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~----~~----~~~v~giD~s~~~~~~a~~~~~~~  213 (304)
                      ......++|||.|.|.+...+.+.    .|    ..++.-||+|+...+.-++.++..
T Consensus        75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            334568999999999988777654    22    468999999999988888887754

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=93.96  E-value=0.032  Score=31.81  Aligned_cols=27  Identities=19%  Similarity=0.578  Sum_probs=14.3

Q ss_pred             eeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      -.||.|++.....+.          ..+.|+.|++.+
T Consensus         3 p~Cp~C~se~~y~D~----------~~~vCp~C~~ew   29 (30)
T PF08274_consen    3 PKCPLCGSEYTYEDG----------ELLVCPECGHEW   29 (30)
T ss_dssp             ---TTT-----EE-S----------SSEEETTTTEEE
T ss_pred             CCCCCCCCcceeccC----------CEEeCCcccccC
Confidence            369999998766442          689999998754

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=93.93  E-value=0.11  Score=49.04  Aligned_cols=110  Identities=23%  Similarity=0.126  Sum_probs=70.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc-cC--CCCCCC-CCcc
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV--CRLPFA-SGFV  238 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~--~~lp~~-~~~f  238 (304)
                      .....++|+|.|.|.-...+...  .....++.||.+..|.......++...   ..+-.++.. -+  ..+|.. ...|
T Consensus       199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~---~~g~~~v~~~~~~r~~~pi~~~~~y  275 (491)
T KOG2539|consen  199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS---HIGEPIVRKLVFHRQRLPIDIKNGY  275 (491)
T ss_pred             cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh---hcCchhccccchhcccCCCCcccce
Confidence            34567888988877655444433  324579999999999999888775411   111111111 11  223433 4459


Q ss_pred             ceEEecchhccCCCHH---HHH-HHHHHhcccCcEEEEEEeCC
Q 021975          239 DAVHAGAALHCWPSPS---NAV-AEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~---~~l-~~~~r~LkpgG~lvi~~~~~  277 (304)
                      |+|++.+.++++.+..   ... +-..+..++||.+++...+.
T Consensus       276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~  318 (491)
T KOG2539|consen  276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT  318 (491)
T ss_pred             eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence            9999999999988664   223 33455778899999988765

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=93.86  E-value=0.037  Score=39.56  Aligned_cols=31  Identities=26%  Similarity=0.694  Sum_probs=23.1

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      ....||.|+.+-....         -.+.|.|..||..|.
T Consensus        34 ~~~~Cp~C~~~~VkR~---------a~GIW~C~kCg~~fA   64 (89)
T COG1997          34 AKHVCPFCGRTTVKRI---------ATGIWKCRKCGAKFA   64 (89)
T ss_pred             cCCcCCCCCCcceeee---------ccCeEEcCCCCCeec
Confidence            4578999999843322         238999999998873

>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins

Probab=93.84  E-value=0.029  Score=42.68  Aligned_cols=22  Identities=32%  Similarity=0.921  Sum_probs=19.2

Q ss_pred             ccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        63 CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ||+|++++..             ..++|++|+...
T Consensus         1 CPvCg~~l~v-------------t~l~C~~C~t~i   22 (113)
T PF09862_consen    1 CPVCGGELVV-------------TRLKCPSCGTEI   22 (113)
T ss_pred             CCCCCCceEE-------------EEEEcCCCCCEE
Confidence            9999999977             579999998754

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.29  E-value=0.78  Score=42.01  Aligned_cols=95  Identities=15%  Similarity=0.111  Sum_probs=58.6

Q ss_pred             cCCCeEEEEcCCc-cHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEE
Q 021975          165 AQGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (304)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (304)
                      .++.+||-+|||. |.++..++++ ....+++++|.++.-++.+++    .+     .. ....+   +. .+..+|+|+
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~-----~~-~~~~~---~~-~~~g~d~vi  227 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD-----ET-YLIDD---IP-EDLAVDHAF  227 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC-----ce-eehhh---hh-hccCCcEEE
Confidence            4578999999875 5555565554 323589999999988777764    11     11 11111   11 112478887


Q ss_pred             ecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      -.-.  . ..-...+.+..++|++||++++....
T Consensus       228 D~~G--~-~~~~~~~~~~~~~l~~~G~iv~~G~~  258 (341)
T cd08237         228 ECVG--G-RGSQSAINQIIDYIRPQGTIGLMGVS  258 (341)
T ss_pred             ECCC--C-CccHHHHHHHHHhCcCCcEEEEEeec
Confidence            5321  0 01234688899999999999876643

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.27  E-value=0.4  Score=46.42  Aligned_cols=97  Identities=21%  Similarity=0.251  Sum_probs=66.0

Q ss_pred             cCCCeEEEEcCCc-cHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC------------
Q 021975          165 AQGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR------------  230 (304)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~------------  230 (304)
                      .++.++|-+|+|. |.....+++. |.  .|+++|.++..++.++. +         ...++..|..+            
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA--~V~v~d~~~~rle~a~~-l---------Ga~~v~v~~~e~g~~~~gYa~~~  229 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA--IVRAFDTRPEVKEQVQS-M---------GAEFLELDFKEEGGSGDGYAKVM  229 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH-c---------CCeEEeccccccccccccceeec
Confidence            3568999999996 5655555554 54  89999999998877776 1         22333323211            


Q ss_pred             -----------CCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEE
Q 021975          231 -----------LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       231 -----------lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~  273 (304)
                                 ++-.-..+|+|+..-.+.--+.|.-+.+++.+.+|||++++=.
T Consensus       230 s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl  283 (511)
T TIGR00561       230 SEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL  283 (511)
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence                       1101246999988776666667766789999999999987643

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK10220 hypothetical protein; Provisional

Probab=93.23  E-value=0.07  Score=39.87  Aligned_cols=34  Identities=18%  Similarity=0.520  Sum_probs=26.6

Q ss_pred             CCeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCC
Q 021975           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (304)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~  101 (304)
                      |++-.||.|++.......          ..+.|+.|+|.+...+
T Consensus         1 m~lP~CP~C~seytY~d~----------~~~vCpeC~hEW~~~~   34 (111)
T PRK10220          1 MSLPHCPKCNSEYTYEDN----------GMYICPECAHEWNDAE   34 (111)
T ss_pred             CCCCcCCCCCCcceEcCC----------CeEECCcccCcCCccc
Confidence            455789999999877553          5799999999886553

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=93.22  E-value=0.052  Score=41.13  Aligned_cols=31  Identities=19%  Similarity=0.536  Sum_probs=24.5

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccccCC
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  100 (304)
                      .-.||.||..++-...          ...+|+.||..|+..
T Consensus         9 KR~Cp~CG~kFYDLnk----------~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    9 KRTCPSCGAKFYDLNK----------DPIVCPKCGTEFPPE   39 (108)
T ss_pred             cccCCCCcchhccCCC----------CCccCCCCCCccCcc
Confidence            3579999999866442          578899999999666

The function of members of this family is unknown.

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains

Probab=93.16  E-value=0.069  Score=30.93  Aligned_cols=27  Identities=19%  Similarity=0.348  Sum_probs=15.7

Q ss_pred             eccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      -||.||++.......         ...+|+.|++.+
T Consensus         5 fC~~CG~~t~~~~~g---------~~r~C~~Cg~~~   31 (32)
T PF09297_consen    5 FCGRCGAPTKPAPGG---------WARRCPSCGHEH   31 (32)
T ss_dssp             B-TTT--BEEE-SSS---------S-EEESSSS-EE
T ss_pred             ccCcCCccccCCCCc---------CEeECCCCcCEe
Confidence            599999998775532         578999998753

; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=92.99  E-value=1.5  Score=44.36  Aligned_cols=106  Identities=11%  Similarity=0.048  Sum_probs=60.1

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHH-HHHHHhcCccCCCCeEEEEccC---CCCCCCCCccceEEec
Q 021975          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-YDFIKQDNTILTSNLALVRADV---CRLPFASGFVDAVHAG  244 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a-~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~V~~~  244 (304)
                      .+.-.|.|+=..-..+.+.+|+..++-+|-+...-+.+ +..+....   ...+.++.+.=   ....|++-+-=+|+..
T Consensus       485 ~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~---~ge~dILiGTQmiaKG~~fp~vtLVgvl~a  561 (730)
T COG1198         485 HLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFA---NGEADILIGTQMIAKGHDFPNVTLVGVLDA  561 (730)
T ss_pred             eeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHh---CCCCCeeecchhhhcCCCcccceEEEEEec
Confidence            57778888888899999999999999999877553332 22222221   12333333321   2234555444455556


Q ss_pred             chhccCCCHH---HHH---HHHHHhcc---cCcEEEEEEeCC
Q 021975          245 AALHCWPSPS---NAV---AEISRILR---SGGVFVGTTFLR  277 (304)
Q Consensus       245 ~vl~h~~d~~---~~l---~~~~r~Lk---pgG~lvi~~~~~  277 (304)
                      ...-+.+|..   +++   .++...-.   ..|.+++.|+..
T Consensus       562 D~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P  603 (730)
T COG1198         562 DTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNP  603 (730)
T ss_pred             hhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCC
Confidence            6666677764   222   22222221   336677777665

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=92.82  E-value=0.072  Score=34.37  Aligned_cols=33  Identities=21%  Similarity=0.461  Sum_probs=22.6

Q ss_pred             CCcCCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      .+....-.||.|++.+.....          ..+.|..||..+
T Consensus        15 ~v~~~~~fCP~Cg~~~m~~~~----------~r~~C~~Cgyt~   47 (50)
T PRK00432         15 KVKRKNKFCPRCGSGFMAEHL----------DRWHCGKCGYTE   47 (50)
T ss_pred             EEEEccCcCcCCCcchheccC----------CcEECCCcCCEE
Confidence            344445589999996333221          689999999765

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=92.72  E-value=0.61  Score=35.94  Aligned_cols=86  Identities=24%  Similarity=0.255  Sum_probs=59.1

Q ss_pred             CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-----C-CCCCccceEEecchhcc
Q 021975          176 GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-FASGFVDAVHAGAALHC  249 (304)
Q Consensus       176 G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~~~fD~V~~~~vl~h  249 (304)
                      |.|..+..+++... .+++++|.++.-.+.+++.-        . -.++..+-.++     . .....+|+|+-.-.   
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~G--------a-~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g---   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELG--------A-DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG---   67 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTT--------E-SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS---
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhc--------c-cccccccccccccccccccccccceEEEEecC---
Confidence            45778888888753 79999999999999888721        1 12222222211     1 22347999887532   


Q ss_pred             CCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          250 WPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       250 ~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                        . ...++....+|+++|++++.....
T Consensus        68 --~-~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   68 --S-GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             --S-HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             --c-HHHHHHHHHHhccCCEEEEEEccC
Confidence              2 457999999999999999988765

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=92.64  E-value=0.055  Score=40.87  Aligned_cols=38  Identities=16%  Similarity=0.204  Sum_probs=26.8

Q ss_pred             ccceEEecchhc--cCC--C--HHHHHHHHHHhcccCcEEEEEE
Q 021975          237 FVDAVHAGAALH--CWP--S--PSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       237 ~fD~V~~~~vl~--h~~--d--~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      .||+|+|.-|.-  |+.  |  ...+++.+...|+|||.|++--
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp   44 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP   44 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence            489999977632  222  2  2368999999999999988854

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors []

Probab=92.62  E-value=0.11  Score=30.38  Aligned_cols=30  Identities=23%  Similarity=0.371  Sum_probs=23.5

Q ss_pred             CeeeccCCCccccc-cCCCCccccccccCceeeCCCCcccc
Q 021975           59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        59 ~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      ....|+.|++++.. ...          ..+.|..|+..++
T Consensus         2 ~~~~C~~C~~~~i~~~~~----------~~~~C~~Cg~~~~   32 (33)
T PF08792_consen    2 NLKKCSKCGGNGIVNKED----------DYEVCIFCGSSFP   32 (33)
T ss_pred             CceEcCCCCCCeEEEecC----------CeEEcccCCcEee
Confidence            45789999998866 332          6899999998764

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=92.58  E-value=0.43  Score=43.93  Aligned_cols=43  Identities=23%  Similarity=0.236  Sum_probs=35.2

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~  208 (304)
                      ..-..++|+|.|.|++++.+.-.+ +..|.+||-|....+.|++
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence            445689999999999999888774 4599999999877766654

>COG1656 Uncharacterized conserved protein [Function unknown]

Probab=92.54  E-value=0.055  Score=43.76  Aligned_cols=42  Identities=24%  Similarity=0.494  Sum_probs=26.2

Q ss_pred             cCCeeeccCCCccccccCCCCc--c----ccccccCceeeCCCCcccc
Q 021975           57 EGDLFSCPICYEPLIRKGPTGL--T----LGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~--~----~~~i~~~~l~C~~C~~~~~   98 (304)
                      ..+.-+||.|+++|........  .    .-......++|++||..|-
T Consensus        94 ~~e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiYW  141 (165)
T COG1656          94 FPEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIYW  141 (165)
T ss_pred             ccccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCccccc
Confidence            3456789999999865432211  0    1112234678999999873

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=92.54  E-value=0.44  Score=42.87  Aligned_cols=110  Identities=12%  Similarity=0.078  Sum_probs=75.1

Q ss_pred             CCeEEEEcCCccHHHHHHHHhC--------------------CCCeEEEEeCCH--HHHHHHHHHHHhc-----------
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSG--------------------TYSGVVALDFSE--NMLRQCYDFIKQD-----------  213 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~--------------------~~~~v~giD~s~--~~~~~a~~~~~~~-----------  213 (304)
                      ..+||-||.|.|.-+.+++...                    +..+++.||+.+  ..+......+...           
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~  166 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN  166 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence            3689999999987665555433                    114899999876  3455555544333           


Q ss_pred             -Cc--cCCCCeEEEEccCCCCCCCC-------CccceEEecchhccC-----CCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          214 -NT--ILTSNLALVRADVCRLPFAS-------GFVDAVHAGAALHCW-----PSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       214 -~~--~~~~~i~~~~~d~~~lp~~~-------~~fD~V~~~~vl~h~-----~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                       ..  ....++.|.+.|+..+..++       ...|+|...+.++-+     ..-.++|..+-..++||-.|+|++-.
T Consensus       167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp  244 (315)
T PF11312_consen  167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP  244 (315)
T ss_pred             cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence             00  02346789999997765321       257888888887653     34457899999999999999988743

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=92.50  E-value=0.077  Score=31.97  Aligned_cols=34  Identities=21%  Similarity=0.522  Sum_probs=22.0

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      .+.||.|+......... +.   .....++|++|++.+
T Consensus         2 ~~~CP~C~~~~~v~~~~-~~---~~~~~v~C~~C~~~~   35 (38)
T TIGR02098         2 RIQCPNCKTSFRVVDSQ-LG---ANGGKVRCGKCGHVW   35 (38)
T ss_pred             EEECCCCCCEEEeCHHH-cC---CCCCEEECCCCCCEE
Confidence            47899999977553311 00   011368999999876

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[]

Probab=92.42  E-value=0.072  Score=31.82  Aligned_cols=28  Identities=18%  Similarity=0.526  Sum_probs=21.7

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (304)
                      ..+.|++|++......+          +.+.|..||+.
T Consensus         7 ~~~~C~~C~~~~~~~~d----------G~~yC~~cG~~   34 (36)
T PF11781_consen    7 PNEPCPVCGSRWFYSDD----------GFYYCDRCGHQ   34 (36)
T ss_pred             CCCcCCCCCCeEeEccC----------CEEEhhhCceE
Confidence            34679999998655443          79999999985

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=92.33  E-value=0.061  Score=28.68  Aligned_cols=22  Identities=23%  Similarity=0.588  Sum_probs=16.8

Q ss_pred             eccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (304)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (304)
                      .||.||.++..             +.-.|+.||+.
T Consensus         1 ~Cp~CG~~~~~-------------~~~fC~~CG~~   22 (23)
T PF13240_consen    1 YCPNCGAEIED-------------DAKFCPNCGTP   22 (23)
T ss_pred             CCcccCCCCCC-------------cCcchhhhCCc
Confidence            39999999854             45679999863

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=92.23  E-value=0.13  Score=48.69  Aligned_cols=115  Identities=18%  Similarity=0.156  Sum_probs=80.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-------CCCCCCcc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-------LPFASGFV  238 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-------lp~~~~~f  238 (304)
                      .+..+|-+|-|.|.+...+....+...+++++++|.+++.|+..+....   ..+..+.-.|..+       ..-.+..|
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~  371 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICP  371 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCC
Confidence            3568899999999999999999888899999999999999999875432   1223333333211       11245689


Q ss_pred             ceEEec----chhccCCCH------HHHHHHHHHhcccCcEEEEEEeCCCCCCccc
Q 021975          239 DAVHAG----AALHCWPSP------SNAVAEISRILRSGGVFVGTTFLRYTSSTSL  284 (304)
Q Consensus       239 D~V~~~----~vl~h~~d~------~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~  284 (304)
                      |++...    . .|-+..|      ..++..+...|.|.|.+++-...+..+..+-
T Consensus       372 dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~  426 (482)
T KOG2352|consen  372 DVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDE  426 (482)
T ss_pred             cEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHH
Confidence            988862    2 3333323      2578889999999999999888775444433

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.20  E-value=2.5  Score=38.50  Aligned_cols=94  Identities=16%  Similarity=0.080  Sum_probs=59.2

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccce
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (304)
                      ....++.+||-.|+|. |..+..+++.. +.++++++.+++-.+.+++.    |    ... ++  +..+.  ..+.+|+
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~----G----a~~-vi--~~~~~--~~~~~d~  226 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALAL----G----AAS-AG--GAYDT--PPEPLDA  226 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHh----C----Cce-ec--ccccc--CcccceE
Confidence            3445678999999763 55556666653 34899999999888777662    1    111 11  11111  1235787


Q ss_pred             EEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ++....     .. ..+....+.|++||++++.-.
T Consensus       227 ~i~~~~-----~~-~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       227 AILFAP-----AG-GLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             EEECCC-----cH-HHHHHHHHhhCCCcEEEEEec
Confidence            654322     12 368889999999999988665

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=92.18  E-value=0.089  Score=34.31  Aligned_cols=26  Identities=23%  Similarity=0.686  Sum_probs=21.6

Q ss_pred             eeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      -.|++|+.++...+           ..+.|+.|+..|
T Consensus         6 ~~C~~Cg~~~~~~d-----------DiVvCp~Cgapy   31 (54)
T PF14446_consen    6 CKCPVCGKKFKDGD-----------DIVVCPECGAPY   31 (54)
T ss_pred             ccChhhCCcccCCC-----------CEEECCCCCCcc
Confidence            57999999997655           589999999877

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=92.17  E-value=0.8  Score=40.50  Aligned_cols=105  Identities=15%  Similarity=0.127  Sum_probs=72.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC---CCccceE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV  241 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V  241 (304)
                      ..++.|+-+| -.-..+.+++-.+-..++..+|+++..+....+..++.+   ..++..+.-|+.+ |++   .+.||++
T Consensus       151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---~~~ie~~~~Dlr~-plpe~~~~kFDvf  225 (354)
T COG1568         151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---YNNIEAFVFDLRN-PLPEDLKRKFDVF  225 (354)
T ss_pred             cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---ccchhheeehhcc-cChHHHHhhCCee
Confidence            3577899999 555566666666655699999999999999999888876   4668888889866 444   3689988


Q ss_pred             EecchhccCCCHHHHHHHHHHhcccC---cEEEEEEe
Q 021975          242 HAGAALHCWPSPSNAVAEISRILRSG---GVFVGTTF  275 (304)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r~Lkpg---G~lvi~~~  275 (304)
                      +..- -+-++-...++..=...||.-   |++.++.-
T Consensus       226 iTDP-peTi~alk~FlgRGI~tLkg~~~aGyfgiT~r  261 (354)
T COG1568         226 ITDP-PETIKALKLFLGRGIATLKGEGCAGYFGITRR  261 (354)
T ss_pred             ecCc-hhhHHHHHHHHhccHHHhcCCCccceEeeeec
Confidence            7621 111111223445555566665   67777663

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.01  E-value=0.072  Score=32.46  Aligned_cols=37  Identities=14%  Similarity=0.225  Sum_probs=19.2

Q ss_pred             eeccCCCccccccC-CCCccccccccCceeeCCCCccc
Q 021975           61 FSCPICYEPLIRKG-PTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        61 l~CP~C~~~l~~~~-~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      +.||.|++...... .+.-..++-+.-.++|.+|++.+
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w   38 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW   38 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence            46999999531111 11112233344688999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>PTZ00357 methyltransferase; Provisional

Probab=91.86  E-value=1.2  Score=44.40  Aligned_cols=100  Identities=16%  Similarity=0.189  Sum_probs=64.1

Q ss_pred             eEEEEcCCccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHh-cCcc-----CCCCeEEEEccCCCCCCCC---
Q 021975          169 LLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQ-DNTI-----LTSNLALVRADVCRLPFAS---  235 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~-~~~~-----~~~~i~~~~~d~~~lp~~~---  235 (304)
                      .|+-+|+|-|.+.....+.    +-..++++||-++..+...+.+... ..+.     ....|+++..|+..+..+.   
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            5899999999986655543    3356899999996654444443311 1110     1245899999998874321   


Q ss_pred             --------CccceEEecchhccCCCH---HHHHHHHHHhccc----CcE
Q 021975          236 --------GFVDAVHAGAALHCWPSP---SNAVAEISRILRS----GGV  269 (304)
Q Consensus       236 --------~~fD~V~~~~vl~h~~d~---~~~l~~~~r~Lkp----gG~  269 (304)
                              +.+|+|++- .|-.+.|-   .+-|..+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                    369999872 23333222   3668888888886    775

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=91.82  E-value=0.23  Score=47.12  Aligned_cols=104  Identities=22%  Similarity=0.310  Sum_probs=79.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC----CCCCCccc
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVD  239 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD  239 (304)
                      .++.+|||.=|++|.-+...+...+ -.++++-|.++..+...+++.+.++  ....+.....|+..+    +-....||
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~--v~~ive~~~~DA~~lM~~~~~~~~~FD  185 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG--VEDIVEPHHSDANVLMYEHPMVAKFFD  185 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC--chhhcccccchHHHHHHhccccccccc
Confidence            4567899999999988777776633 4689999999999999999988776  455566667776442    23356899


Q ss_pred             eEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +|-..    -...+..+|+.+.+.++.||.|.++.
T Consensus       186 vIDLD----PyGs~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  186 VIDLD----PYGSPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             eEecC----CCCCccHHHHHHHHHhhcCCEEEEEe
Confidence            88762    23456789999999999999988865

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=91.81  E-value=5.3  Score=35.26  Aligned_cols=117  Identities=11%  Similarity=-0.007  Sum_probs=74.9

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-C----
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L----  231 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l----  231 (304)
                      .+.+.+... ...|+.+|||-=.-...+... .+..++-+|. |+.++.-++.++..+.....+..++..|+.. +    
T Consensus        73 ~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L  149 (260)
T TIGR00027        73 FLLAAVAAG-IRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAAL  149 (260)
T ss_pred             HHHHHHhcC-CcEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHH
Confidence            344444432 457999999986555555322 2346666664 5567777777775442235678899999852 1    


Q ss_pred             ---CCCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeC
Q 021975          232 ---PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       232 ---p~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                         .|....--++++-+++.+++..  ..+++.+.+...||+.+++....
T Consensus       150 ~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       150 AAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             HhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence               1222233477778888888754  46889998888888888876544

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function

Probab=91.81  E-value=0.095  Score=42.12  Aligned_cols=41  Identities=24%  Similarity=0.521  Sum_probs=26.1

Q ss_pred             eeeccCCCccccccCCCCc------cccccccCceeeCCCCccccCC
Q 021975           60 LFSCPICYEPLIRKGPTGL------TLGAIYRSGFKCRKCDKTYSSK  100 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~------~~~~i~~~~l~C~~C~~~~~~~  100 (304)
                      .-+||.|++++.......+      .........++|+.||..|-..
T Consensus        91 ~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW~G  137 (147)
T PF01927_consen   91 FSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYWEG  137 (147)
T ss_pred             CCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEeccc
Confidence            5789999998865443211      1111223478999999988443

The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=91.79  E-value=3  Score=40.51  Aligned_cols=127  Identities=14%  Similarity=0.142  Sum_probs=79.1

Q ss_pred             CCCcHHHHHHHHHhhccc--CCCeEEEEcCCccHHHHHHHHh---C-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCe
Q 021975          148 FPGPDEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKS---G-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNL  221 (304)
Q Consensus       148 ~~~~~~~~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~---~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i  221 (304)
                      +..+.++.+.+.+.+...  ++..|.|.-||+|.++......   + ....++|.+..+.+...++.++..++. .....
T Consensus       197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~-~~~t~  275 (501)
T TIGR00497       197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI-DYANF  275 (501)
T ss_pred             eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC-Ccccc
Confidence            567778888777766543  4568999999999998765432   1 124699999999999999988655441 01122


Q ss_pred             EEEEccCCCCC-C-CCCccceEEecchh--------------------cc----CC-CHHHHHHHHHHhcccCcEEEEEE
Q 021975          222 ALVRADVCRLP-F-ASGFVDAVHAGAAL--------------------HC----WP-SPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       222 ~~~~~d~~~lp-~-~~~~fD~V~~~~vl--------------------~h----~~-d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ....+|....+ + ....||+|+++--+                    .|    .. .-..++..+..+|++||...+.-
T Consensus       276 ~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~  355 (501)
T TIGR00497       276 NIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC  355 (501)
T ss_pred             CcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence            23233332211 1 23457777753211                    11    11 11257888899999999865554


Q ss_pred             e
Q 021975          275 F  275 (304)
Q Consensus       275 ~  275 (304)
                      +
T Consensus       356 ~  356 (501)
T TIGR00497       356 F  356 (501)
T ss_pred             c
Confidence            4

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd08230 glucose_DH Glucose dehydrogenase

Probab=91.78  E-value=1.1  Score=41.07  Aligned_cols=95  Identities=14%  Similarity=0.060  Sum_probs=58.2

Q ss_pred             cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeC---CHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCCCcc
Q 021975          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDF---SENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFV  238 (304)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~---s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~f  238 (304)
                      .++.+||-+|+|. |.+...+++.. +.++++++.   ++.-.+.+++    .+      ...+...-.+.  ....+.+
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~----~G------a~~v~~~~~~~~~~~~~~~~  239 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEE----LG------ATYVNSSKTPVAEVKLVGEF  239 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHH----cC------CEEecCCccchhhhhhcCCC
Confidence            4577899999875 66666677663 348999986   5666666654    11      22221110110  0012458


Q ss_pred             ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      |+|+-.-.     .+ ..+.+..+.|++||.+++....
T Consensus       240 d~vid~~g-----~~-~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         240 DLIIEATG-----VP-PLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             CEEEECcC-----CH-HHHHHHHHHccCCcEEEEEecC
Confidence            88776432     22 3678899999999998876543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF14353 CpXC: CpXC protein

Probab=91.69  E-value=0.1  Score=40.77  Aligned_cols=41  Identities=20%  Similarity=0.436  Sum_probs=25.2

Q ss_pred             eeccCCCccccccCCCCccccc-------ccc---CceeeCCCCccccCCC
Q 021975           61 FSCPICYEPLIRKGPTGLTLGA-------IYR---SGFKCRKCDKTYSSKD  101 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~-------i~~---~~l~C~~C~~~~~~~~  101 (304)
                      +.||.|+..........++...       +..   ..+.|++||+.+...-
T Consensus         2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~   52 (128)
T PF14353_consen    2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEY   52 (128)
T ss_pred             cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCC
Confidence            6899999986554433332111       111   3578999999886543

>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA

Probab=91.64  E-value=0.13  Score=38.46  Aligned_cols=31  Identities=16%  Similarity=0.487  Sum_probs=24.7

Q ss_pred             eeccCCCccccccCCCCccccccccCceeeCCCCccccCCC
Q 021975           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~  101 (304)
                      -.||.|++.......          ..+.|+.|+|.+...+
T Consensus         3 p~CP~C~seytY~dg----------~~~iCpeC~~EW~~~~   33 (109)
T TIGR00686         3 PPCPKCNSEYTYHDG----------TQLICPSCLYEWNENE   33 (109)
T ss_pred             CcCCcCCCcceEecC----------CeeECccccccccccc
Confidence            579999999877553          5799999999985543

The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=91.59  E-value=0.2  Score=32.31  Aligned_cols=34  Identities=32%  Similarity=0.606  Sum_probs=23.3

Q ss_pred             eccCCCccccccCCCCccccccccCceeeCCCCccccCCCC
Q 021975           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (304)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g  102 (304)
                      -||.||.-+.......       ...+.|+.||+.+.+...
T Consensus         2 FCp~Cg~~l~~~~~~~-------~~~~vC~~Cg~~~~~~~~   35 (52)
T smart00661        2 FCPKCGNMLIPKEGKE-------KRRFVCRKCGYEEPIEQK   35 (52)
T ss_pred             CCCCCCCccccccCCC-------CCEEECCcCCCeEECCCc
Confidence            4999999775543210       137899999988766544

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=91.52  E-value=0.11  Score=35.80  Aligned_cols=26  Identities=35%  Similarity=0.945  Sum_probs=16.6

Q ss_pred             eeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      +.||.|+.+|....           +.++|..|+..|
T Consensus         2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~   27 (70)
T PF07191_consen    2 NTCPKCQQELEWQG-----------GHYHCEACQKDY   27 (70)
T ss_dssp             -B-SSS-SBEEEET-----------TEEEETTT--EE
T ss_pred             CcCCCCCCccEEeC-----------CEEECccccccc
Confidence            57999999987755           578888887765

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=91.50  E-value=3.8  Score=34.94  Aligned_cols=114  Identities=14%  Similarity=0.076  Sum_probs=68.5

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccH--HHHHH--HHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC-CC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGL--FSRKF--AKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CR  230 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~--~~~~l--~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~  230 (304)
                      ++|...-...+...++++.++.|.  .+..|  +.+..++++++|-+++......++.+...+  ...-++|+.++. +.
T Consensus        31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~--~~~~vEfvvg~~~e~  108 (218)
T PF07279_consen   31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG--LSDVVEFVVGEAPEE  108 (218)
T ss_pred             HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc--ccccceEEecCCHHH
Confidence            444444444556789999766542  23333  333335699999999988888888887666  345578888874 22


Q ss_pred             CCCCCCccceEEecchhccCCCHHHHHHHHHHhcc--cCcEEEEEEeCC
Q 021975          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILR--SGGVFVGTTFLR  277 (304)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lk--pgG~lvi~~~~~  277 (304)
                      +--.-...|+++...=      ...+.+++.+.++  |.|-+++.....
T Consensus       109 ~~~~~~~iDF~vVDc~------~~d~~~~vl~~~~~~~~GaVVV~~Na~  151 (218)
T PF07279_consen  109 VMPGLKGIDFVVVDCK------REDFAARVLRAAKLSPRGAVVVCYNAF  151 (218)
T ss_pred             HHhhccCCCEEEEeCC------chhHHHHHHHHhccCCCceEEEEeccc
Confidence            2111235788877542      3333445555444  457777666543

The function of this family is unknown.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.49  E-value=3  Score=35.91  Aligned_cols=97  Identities=23%  Similarity=0.290  Sum_probs=61.2

Q ss_pred             cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-----CCCCCcc
Q 021975          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASGFV  238 (304)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~f  238 (304)
                      .++.+||..|+|. |..+..+++.. +.++++++.++...+.+++..        . ..++.......     ....+.+
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g--------~-~~~~~~~~~~~~~~~~~~~~~~~  202 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELG--------A-DHVIDYKEEDLEEELRLTGGGGA  202 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhC--------C-ceeccCCcCCHHHHHHHhcCCCC
Confidence            5678999999996 66666666653 359999999988777775421        0 01111110110     0123568


Q ss_pred             ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      |+|+....     .. ..+..+.+.|+++|.++......
T Consensus       203 d~vi~~~~-----~~-~~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         203 DVVIDAVG-----GP-ETLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             CEEEECCC-----CH-HHHHHHHHhcccCCEEEEEccCC
Confidence            99886432     21 45777889999999988766443

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=91.40  E-value=0.12  Score=39.80  Aligned_cols=31  Identities=6%  Similarity=0.023  Sum_probs=24.2

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccccCC
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  100 (304)
                      .-.||.||..+.-...          ....|+.||..|+..
T Consensus         9 Kr~Cp~cg~kFYDLnk----------~p~vcP~cg~~~~~~   39 (129)
T TIGR02300         9 KRICPNTGSKFYDLNR----------RPAVSPYTGEQFPPE   39 (129)
T ss_pred             cccCCCcCccccccCC----------CCccCCCcCCccCcc
Confidence            3579999999866442          578999999988554

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>TIGR00595 priA primosomal protein N'

Probab=91.39  E-value=5  Score=39.05  Aligned_cols=31  Identities=19%  Similarity=0.117  Sum_probs=21.6

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEEeCC
Q 021975          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFS  199 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s  199 (304)
                      .+--.|-|+=.....+.+.+|+..+.-+|-+
T Consensus       263 ~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d  293 (505)
T TIGR00595       263 DLVYKGYGTEQVEEELAKLFPGARIARIDSD  293 (505)
T ss_pred             eeEeecccHHHHHHHHHhhCCCCcEEEEecc
Confidence            4556677777777777777776677777654

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=91.37  E-value=1.5  Score=39.55  Aligned_cols=89  Identities=15%  Similarity=0.115  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      ++.++|=+|||. |.++..+++......++++|.++..++.+...            .++  |..+.  ....+|+|+-.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~------------~~i--~~~~~--~~~g~Dvvid~  207 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY------------EVL--DPEKD--PRRDYRAIYDA  207 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc------------ccc--Chhhc--cCCCCCEEEEC
Confidence            466788889874 77777777764233477889888766655431            111  11110  13458888764


Q ss_pred             chhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      -     .. ...+..+.+.|+++|++++....
T Consensus       208 ~-----G~-~~~~~~~~~~l~~~G~iv~~G~~  233 (308)
T TIGR01202       208 S-----GD-PSLIDTLVRRLAKGGEIVLAGFY  233 (308)
T ss_pred             C-----CC-HHHHHHHHHhhhcCcEEEEEeec
Confidence            3     22 23578889999999999876643

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=91.15  E-value=0.13  Score=41.60  Aligned_cols=40  Identities=25%  Similarity=0.492  Sum_probs=23.7

Q ss_pred             eeccCCCccccccCCCCc-cccccccCceeeCCCCccccCC
Q 021975           61 FSCPICYEPLIRKGPTGL-TLGAIYRSGFKCRKCDKTYSSK  100 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~-~~~~i~~~~l~C~~C~~~~~~~  100 (304)
                      +.||-|+++......... ..+.......+|+.||..|..-
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~   41 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTF   41 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEe
Confidence            479999997633222221 1122222348899999988443

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=91.09  E-value=0.46  Score=41.63  Aligned_cols=114  Identities=18%  Similarity=0.174  Sum_probs=62.8

Q ss_pred             hhcccCCCeEEEEcCCccHHHHHHH---Hh-C-CCCeEEEEeCCH--------------------------HHHHHHHHH
Q 021975          161 YFKSAQGGLLVDVSCGSGLFSRKFA---KS-G-TYSGVVALDFSE--------------------------NMLRQCYDF  209 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~~~~l~---~~-~-~~~~v~giD~s~--------------------------~~~~~a~~~  209 (304)
                      .+...-.+.|+|.||-.|..+..++   +. + .+.++++.|--+                          ...+..+++
T Consensus        69 v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n  148 (248)
T PF05711_consen   69 VLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVREN  148 (248)
T ss_dssp             CCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHC
T ss_pred             HHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHH
Confidence            3333446799999999998665443   22 2 345788888421                          134455555


Q ss_pred             HHhcCccCCCCeEEEEccCCC-CC-CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          210 IKQDNTILTSNLALVRADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       210 ~~~~~~~~~~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +...++ ...++.++.+.+.+ +| .+...+-++..-.-+.  ..-...|+.+...|.|||++++-++..
T Consensus       149 ~~~~gl-~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY~~  215 (248)
T PF05711_consen  149 FARYGL-LDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDYGH  215 (248)
T ss_dssp             CCCTTT-SSTTEEEEES-HHHHCCC-TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred             HHHcCC-CcccEEEECCcchhhhccCCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence            555443 34689999999854 33 2233333333321111  122468999999999999999999876

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.08  E-value=0.16  Score=28.51  Aligned_cols=22  Identities=27%  Similarity=0.841  Sum_probs=11.4

Q ss_pred             eccCCCccccccCCCCccccccccCceeeCC
Q 021975           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK   92 (304)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~   92 (304)
                      .||+|++++.+....         ..++|.+
T Consensus         1 ~CP~C~s~l~~~~~e---------v~~~C~N   22 (28)
T PF03119_consen    1 TCPVCGSKLVREEGE---------VDIRCPN   22 (28)
T ss_dssp             B-TTT--BEEE-CCT---------TCEEE--
T ss_pred             CcCCCCCEeEcCCCC---------EeEECCC
Confidence            499999999865532         4677764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.

>PRK05580 primosome assembly protein PriA; Validated

Probab=90.57  E-value=4.7  Score=40.80  Aligned_cols=31  Identities=19%  Similarity=0.187  Sum_probs=19.7

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEEeCC
Q 021975          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFS  199 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s  199 (304)
                      .+-..|-|+=.....+.+.+|+..+.-+|-+
T Consensus       431 ~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d  461 (679)
T PRK05580        431 DLVPVGPGTERLEEELAELFPEARILRIDRD  461 (679)
T ss_pred             eeEEeeccHHHHHHHHHHhCCCCcEEEEecc
Confidence            4556666666666667666666666666643

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=90.51  E-value=2.9  Score=39.04  Aligned_cols=120  Identities=17%  Similarity=0.137  Sum_probs=69.0

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccH----HHHHHHHhC---CCCeEEEEeC----CHHHHHHHHHHHHhcCccCCCCeEEE
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGL----FSRKFAKSG---TYSGVVALDF----SENMLRQCYDFIKQDNTILTSNLALV  224 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~~---~~~~v~giD~----s~~~~~~a~~~~~~~~~~~~~~i~~~  224 (304)
                      ..|.+.+...+.-.|+|+|-|.|.    +...|+.+.   |..+++||+.    +...++.+.+++....-......+|.
T Consensus       100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~  179 (374)
T PF03514_consen  100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH  179 (374)
T ss_pred             HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence            344555555556679999999995    445555541   4578999999    77777777777644331112333443


Q ss_pred             E---ccCCCC-----CCCCCccceEEecchhccCCC-------HHHHHHHHHHhcccCcEEEEEEeC
Q 021975          225 R---ADVCRL-----PFASGFVDAVHAGAALHCWPS-------PSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       225 ~---~d~~~l-----p~~~~~fD~V~~~~vl~h~~d-------~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .   .+.+++     ....+..=+|-+.+.|||+.+       |...+=...+.|+|.- +++++..
T Consensus       180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v-vv~~E~e  245 (374)
T PF03514_consen  180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV-VVLVEQE  245 (374)
T ss_pred             ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE-EEEEeec
Confidence            3   233332     122333334455677899862       3333445566889974 4444443

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)

Probab=90.50  E-value=0.19  Score=30.91  Aligned_cols=27  Identities=30%  Similarity=0.544  Sum_probs=20.3

Q ss_pred             CCeeeccCCCccccccCCCCccccccccCceeeCCCC
Q 021975           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCD   94 (304)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~   94 (304)
                      |-.-.||.|+.++.+...          +...|..|+
T Consensus        15 ML~~~Cp~C~~PL~~~k~----------g~~~Cv~C~   41 (41)
T PF06677_consen   15 MLDEHCPDCGTPLMRDKD----------GKIYCVSCG   41 (41)
T ss_pred             HhcCccCCCCCeeEEecC----------CCEECCCCC
Confidence            334579999999988432          678899885

It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=90.48  E-value=0.12  Score=28.35  Aligned_cols=23  Identities=22%  Similarity=0.541  Sum_probs=17.4

Q ss_pred             eeccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (304)
                      ..||.||..+..             +.-.|+.||..
T Consensus         3 ~~Cp~Cg~~~~~-------------~~~fC~~CG~~   25 (26)
T PF13248_consen    3 MFCPNCGAEIDP-------------DAKFCPNCGAK   25 (26)
T ss_pred             CCCcccCCcCCc-------------ccccChhhCCC
Confidence            579999996533             46789999863

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=90.44  E-value=1  Score=45.29  Aligned_cols=108  Identities=17%  Similarity=0.116  Sum_probs=63.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhC-------C-----CCeEEEEeCCH---HHHHHHH-----------HHHHhc-----C
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSG-------T-----YSGVVALDFSE---NMLRQCY-----------DFIKQD-----N  214 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~-------~-----~~~v~giD~s~---~~~~~a~-----------~~~~~~-----~  214 (304)
                      +.-+|+|+|=|+|.......+..       +     ..+++++|..|   +.+..+.           +..+..     +
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            34689999999998654444221       2     24789999654   2222222           111110     1


Q ss_pred             c---c---CCCCeEEEEccCCC-CCCCCCccceEEecchhccCCCH----HHHHHHHHHhcccCcEEEEEE
Q 021975          215 T---I---LTSNLALVRADVCR-LPFASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       215 ~---~---~~~~i~~~~~d~~~-lp~~~~~fD~V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      .   .   ....++++.+|+.+ ++--...||+++.... .=-.+|    ..+++++.++++|||++.-.+
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~F-sP~~np~~W~~~~~~~l~~~~~~~~~~~t~t  206 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGF-APAKNPDMWSPNLFNALARLARPGATLATFT  206 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCC-CCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence            0   0   01245567788754 2211246999998531 111234    378999999999999988554

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=90.19  E-value=3.5  Score=36.50  Aligned_cols=95  Identities=24%  Similarity=0.175  Sum_probs=57.9

Q ss_pred             cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEE-ccC----CCCCCCCCcc
Q 021975          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADV----CRLPFASGFV  238 (304)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~----~~lp~~~~~f  238 (304)
                      .++.+||-+|+|. |..+..+++......++++|.++...+.+++.    +    .. .++. .+.    ..+ .....+
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----G----a~-~~i~~~~~~~~~~~~-~~~~g~  188 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----G----AT-ALAEPEVLAERQGGL-QNGRGV  188 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----C----Cc-EecCchhhHHHHHHH-hCCCCC
Confidence            4678899998864 55666666653222499999999888777662    1    11 1111 010    001 012358


Q ss_pred             ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      |+|+-.-     .. ...+.+..+.|+++|++++...
T Consensus       189 d~vid~~-----G~-~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       189 DVALEFS-----GA-TAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             CEEEECC-----CC-hHHHHHHHHHhcCCCEEEEecc
Confidence            8887532     12 3457888999999999987764

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=90.01  E-value=0.18  Score=30.86  Aligned_cols=37  Identities=16%  Similarity=0.309  Sum_probs=21.7

Q ss_pred             eeccCCCcccccc-CCCCccccccccCceeeCCCCccc
Q 021975           61 FSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        61 l~CP~C~~~l~~~-~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ..||.|+...... ..+.-+.++-+.-.+.|.+|++.+
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w   38 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRW   38 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEe
Confidence            3699999853211 111112233444688999999875

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=89.85  E-value=0.62  Score=43.53  Aligned_cols=67  Identities=9%  Similarity=0.063  Sum_probs=54.3

Q ss_pred             CCCeEEEEccCCCCC--CCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCCCCCCccc
Q 021975          218 TSNLALVRADVCRLP--FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSL  284 (304)
Q Consensus       218 ~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~  284 (304)
                      .+++.++.+++.+..  .+++++|.++.....+.+++.  .+.++++.+.++|||++++-+....+.....
T Consensus       274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~~~~~~  344 (380)
T PF11899_consen  274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPPWYPGR  344 (380)
T ss_pred             CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCccc
Confidence            388999999997642  457899999999999988754  4789999999999999999998875544433

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=89.83  E-value=0.29  Score=30.62  Aligned_cols=28  Identities=21%  Similarity=0.535  Sum_probs=21.8

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      .+.|..||..+....          ...++|+.||+.-
T Consensus         2 ~Y~C~~Cg~~~~~~~----------~~~irC~~CG~rI   29 (44)
T smart00659        2 IYICGECGRENEIKS----------KDVVRCRECGYRI   29 (44)
T ss_pred             EEECCCCCCEeecCC----------CCceECCCCCceE
Confidence            478999999876542          1689999999864

present in RNA polymerase I, II and III

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=89.49  E-value=6.5  Score=36.07  Aligned_cols=97  Identities=16%  Similarity=0.135  Sum_probs=59.4

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC------CCCCC
Q 021975          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASG  236 (304)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~~  236 (304)
                      ..++.+||-.|+|. |..+.++++.....+|+++|.++...+.+++.    +    .. .++...-.+.      .....
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----G----a~-~~i~~~~~~~~~~i~~~~~~~  244 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----G----AT-HTVNSSGTDPVEAIRALTGGF  244 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C----Cc-eEEcCCCcCHHHHHHHHhCCC
Confidence            45678899998864 56666677664222599999999888888652    1    11 1221111110      01123


Q ss_pred             ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .+|+|+-.-     ..+ ..+.+..+.+++||++++...
T Consensus       245 g~d~vid~~-----g~~-~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       245 GADVVIDAV-----GRP-ETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCCEEEECC-----CCH-HHHHHHHHHhccCCEEEEECC
Confidence            588887532     233 357778899999999987654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PF14205 Cys_rich_KTR: Cysteine-rich KTR

Probab=89.48  E-value=0.28  Score=31.85  Aligned_cols=36  Identities=22%  Similarity=0.413  Sum_probs=21.3

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ..+.||+||+.-......+   .....-.+.|+.|.+..
T Consensus         3 ~Wi~CP~CgnKTR~kir~D---T~LkNfPlyCpKCK~Et   38 (55)
T PF14205_consen    3 EWILCPICGNKTRLKIRED---TVLKNFPLYCPKCKQET   38 (55)
T ss_pred             eEEECCCCCCccceeeecC---ceeccccccCCCCCceE
Confidence            4678999998542222111   11222468899998764

>COG1779 C4-type Zn-finger protein [General function prediction only]

Probab=89.40  E-value=0.16  Score=42.37  Aligned_cols=41  Identities=20%  Similarity=0.292  Sum_probs=26.4

Q ss_pred             cCCeeeccCCCccccccCC--CCccccccccCceeeCCCCccc
Q 021975           57 EGDLFSCPICYEPLIRKGP--TGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~--~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ....+.||+|++.+.....  ...-.+.+......|.+||..+
T Consensus        11 ~~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~   53 (201)
T COG1779          11 FETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRS   53 (201)
T ss_pred             eeeeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCcc
Confidence            3456889999997644221  1113344555678999998765

>PRK11524 putative methyltransferase; Provisional

Probab=89.39  E-value=0.29  Score=43.87  Aligned_cols=56  Identities=18%  Similarity=0.251  Sum_probs=37.9

Q ss_pred             CCeEEEEccCCCC--CCCCCccceEEecchhc---c-------C------CCHHHHHHHHHHhcccCcEEEEEE
Q 021975          219 SNLALVRADVCRL--PFASGFVDAVHAGAALH---C-------W------PSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       219 ~~i~~~~~d~~~l--p~~~~~fD~V~~~~vl~---h-------~------~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ....++++|..+.  .+++++||+|++.--..   .       .      .-....+.++.++|||||.+++..
T Consensus         7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524          7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            3456788888663  35678899999842211   0       0      011368899999999999998753

>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family

Probab=89.38  E-value=0.3  Score=31.88  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=21.5

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~   99 (304)
                      +..||.||+.-......  ..+......+.|.+|+...+.
T Consensus         1 LkPCPfCGg~~~~~~~~--~~~~~~~~~~~C~~Cga~~~~   38 (53)
T TIGR03655         1 LKPCPFCGGADVYLRRG--FDPLDLSHYFECSTCGASGPV   38 (53)
T ss_pred             CCCCCCCCCcceeeEec--cCCCCCEEEEECCCCCCCccc
Confidence            35799999965421100  011112245589999987654

Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.

>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=89.20  E-value=0.18  Score=36.64  Aligned_cols=30  Identities=27%  Similarity=0.821  Sum_probs=21.7

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ....||.|+..-....         ..+.|.|..|+..+
T Consensus        34 ~ky~Cp~Cgk~~vkR~---------a~GIW~C~~C~~~~   63 (90)
T PF01780_consen   34 AKYTCPFCGKTSVKRV---------ATGIWKCKKCGKKF   63 (90)
T ss_dssp             S-BEESSSSSSEEEEE---------ETTEEEETTTTEEE
T ss_pred             CCCcCCCCCCceeEEe---------eeEEeecCCCCCEE
Confidence            4588999999753322         12789999999876

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....

>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2

Probab=89.18  E-value=0.21  Score=29.58  Aligned_cols=32  Identities=25%  Similarity=0.422  Sum_probs=19.9

Q ss_pred             eeccCCCccccccCCCCccccccccCceeeCCCCccccCC
Q 021975           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  100 (304)
                      .-||.|+.-|.......        ....|++|+..+++.
T Consensus         2 ~FCp~C~nlL~p~~~~~--------~~~~C~~C~Y~~~~~   33 (35)
T PF02150_consen    2 RFCPECGNLLYPKEDKE--------KRVACRTCGYEEPIS   33 (35)
T ss_dssp             -BETTTTSBEEEEEETT--------TTEEESSSS-EEE-S
T ss_pred             eeCCCCCccceEcCCCc--------cCcCCCCCCCccCCC
Confidence            35999999886544211        222899999887654

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=89.03  E-value=5.8  Score=36.66  Aligned_cols=98  Identities=28%  Similarity=0.241  Sum_probs=59.2

Q ss_pred             cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-----CCCCC
Q 021975          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASG  236 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~  236 (304)
                      ...++.+||=.|+|. |..+..+++.....+|+++|.++...+.+++.    +    .. .++...-.+.     ....+
T Consensus       188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----G----a~-~~i~~~~~~~~~~i~~~~~~  258 (371)
T cd08281         188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----G----AT-ATVNAGDPNAVEQVRELTGG  258 (371)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----C----Cc-eEeCCCchhHHHHHHHHhCC
Confidence            345677888899764 55666666664223699999999988888652    1    11 1121111110     01123


Q ss_pred             ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .+|+|+-.-     .. ...+....+.|+++|.+++...
T Consensus       259 g~d~vid~~-----G~-~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         259 GVDYAFEMA-----GS-VPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CCCEEEECC-----CC-hHHHHHHHHHHhcCCEEEEEcc
Confidence            588887532     12 2457788899999999887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=89.01  E-value=4.5  Score=38.26  Aligned_cols=90  Identities=10%  Similarity=0.039  Sum_probs=57.9

Q ss_pred             cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      .++.+|+-+|+|. |......++.. +.+|+.+|.++.....|+.          .....+.  ..+. .  ..+|+|+.
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~----------~G~~~~~--~~e~-v--~~aDVVI~  263 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAM----------EGYEVMT--MEEA-V--KEGDIFVT  263 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHh----------cCCEEcc--HHHH-H--cCCCEEEE
Confidence            4688999999997 66555555442 3489999999988777765          1222221  1111 1  24798886


Q ss_pred             cchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .-     ..+..+-.+..+.+|+||+++....
T Consensus       264 at-----G~~~~i~~~~l~~mk~GgilvnvG~  290 (413)
T cd00401         264 TT-----GNKDIITGEHFEQMKDGAIVCNIGH  290 (413)
T ss_pred             CC-----CCHHHHHHHHHhcCCCCcEEEEeCC
Confidence            42     2343333445899999999987764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.96  E-value=0.2  Score=37.18  Aligned_cols=26  Identities=35%  Similarity=0.843  Sum_probs=21.1

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      -+..||+|+..+..             ..++|++|+...
T Consensus         5 ~~~~cPvcg~~~iV-------------TeL~c~~~etTV   30 (122)
T COG3877           5 VINRCPVCGRKLIV-------------TELKCSNCETTV   30 (122)
T ss_pred             CCCCCCccccccee-------------EEEecCCCCceE
Confidence            35789999999877             579999998653

>PRK14873 primosome assembly protein PriA; Provisional

Probab=88.90  E-value=5.2  Score=40.33  Aligned_cols=95  Identities=18%  Similarity=0.091  Sum_probs=53.5

Q ss_pred             CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc--
Q 021975          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA--  245 (304)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~--  245 (304)
                      ..+.-.|-|+-..-..+.+.+|+..|.-+|-+. .++.    +.       ....++.+.=...|.-.+.+.+|....  
T Consensus       431 ~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~-~l~~----~~-------~~~~IlVGTqgaepm~~g~~~lV~ildaD  498 (665)
T PRK14873        431 DRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQ-VVDT----VD-------AGPALVVATPGAEPRVEGGYGAALLLDAW  498 (665)
T ss_pred             CcceeeeccHHHHHHHHHHHCCCCCEEEEChHH-HHHh----hc-------cCCCEEEECCCCcccccCCceEEEEEcch
Confidence            357778888888888888888888888888432 2211    11       245556555322333335677665533  


Q ss_pred             hhccCCCHH---HHHHHHHHh---c---ccCcEEEEEE
Q 021975          246 ALHCWPSPS---NAVAEISRI---L---RSGGVFVGTT  274 (304)
Q Consensus       246 vl~h~~d~~---~~l~~~~r~---L---kpgG~lvi~~  274 (304)
                      .+-+.+|..   .+++.+..+   .   +++|.+++.+
T Consensus       499 ~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~  536 (665)
T PRK14873        499 ALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA  536 (665)
T ss_pred             hhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence            233344443   344433332   3   3468888765

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=88.86  E-value=1.6  Score=38.59  Aligned_cols=74  Identities=20%  Similarity=0.212  Sum_probs=47.0

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      ..+.+.-...+...++|+|||.|.++.+++...     ....++.||-...-.+ +-.++....  ....+.-+..|+.+
T Consensus         8 ~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~--~~~~~~R~riDI~d   84 (259)
T PF05206_consen    8 GNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDE--SEPKFERLRIDIKD   84 (259)
T ss_pred             HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccC--CCCceEEEEEEeec
Confidence            344443333556799999999999999999875     4568999997553322 222222221  11356777778877


Q ss_pred             CC
Q 021975          231 LP  232 (304)
Q Consensus       231 lp  232 (304)
                      +.
T Consensus        85 l~   86 (259)
T PF05206_consen   85 LD   86 (259)
T ss_pred             cc
Confidence            64

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=88.57  E-value=1.7  Score=39.19  Aligned_cols=100  Identities=20%  Similarity=0.192  Sum_probs=71.8

Q ss_pred             CCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      ++.+|.-||.|. |.....++.-. +++|+-+|+|..-+++....+.       .++.........+.-.-...|+|+..
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~-------~rv~~~~st~~~iee~v~~aDlvIga  238 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG-------GRVHTLYSTPSNIEEAVKKADLVIGA  238 (371)
T ss_pred             CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC-------ceeEEEEcCHHHHHHHhhhccEEEEE
Confidence            456788888885 66666665543 5699999999998888877542       45666665554443223468988876


Q ss_pred             chhccCCCHHHHHHHHHHhcccCcEEEEE
Q 021975          245 AALHCWPSPSNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~  273 (304)
                      -.+---..|.-..+++.+.+|||++++=.
T Consensus       239 VLIpgakaPkLvt~e~vk~MkpGsVivDV  267 (371)
T COG0686         239 VLIPGAKAPKLVTREMVKQMKPGSVIVDV  267 (371)
T ss_pred             EEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence            55555668888899999999999988743

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=88.53  E-value=1.4  Score=36.62  Aligned_cols=95  Identities=13%  Similarity=0.153  Sum_probs=56.3

Q ss_pred             HHHHHhhcccCCC-eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--
Q 021975          156 KMAQEYFKSAQGG-LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (304)
Q Consensus       156 ~~l~~~l~~~~~~-~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (304)
                      +.+.+++...++. .|+.+|||-=.....+....++..++-+|. |++++.-++.++..+.....+.+++.+|+.+..  
T Consensus        67 ~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~  145 (183)
T PF04072_consen   67 DAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWI  145 (183)
T ss_dssp             HHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHH
T ss_pred             HHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhH
Confidence            4455555444454 899999999888777777644567888885 667777777766553101123567999987621  


Q ss_pred             -------CCCCccceEEecchhccCC
Q 021975          233 -------FASGFVDAVHAGAALHCWP  251 (304)
Q Consensus       233 -------~~~~~fD~V~~~~vl~h~~  251 (304)
                             +..+.--++++-+++.+++
T Consensus       146 ~~L~~~g~~~~~ptl~i~Egvl~Yl~  171 (183)
T PF04072_consen  146 DALPKAGFDPDRPTLFIAEGVLMYLS  171 (183)
T ss_dssp             HHHHHCTT-TTSEEEEEEESSGGGS-
T ss_pred             HHHHHhCCCCCCCeEEEEcchhhcCC
Confidence                   2234445677777788875

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=88.52  E-value=5.7  Score=35.92  Aligned_cols=95  Identities=20%  Similarity=0.294  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc---CCCCCCCCCccceE
Q 021975          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD---VCRLPFASGFVDAV  241 (304)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d---~~~lp~~~~~fD~V  241 (304)
                      ++.+||-.|+|. |..+..+++......+++++.++...+.+++.    +    .. .++...   +..+....+.+|+|
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g----~~-~vi~~~~~~~~~~~~~~~~vd~v  235 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----G----AD-ETVNLARDPLAAYAADKGDFDVV  235 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----C----CC-EEEcCCchhhhhhhccCCCccEE
Confidence            677888888875 66766677664223789999988887766552    1    11 122111   11111122358998


Q ss_pred             EecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +.....      ...++++.+.|+++|+++....
T Consensus       236 ld~~g~------~~~~~~~~~~L~~~G~~v~~g~  263 (339)
T cd08232         236 FEASGA------PAALASALRVVRPGGTVVQVGM  263 (339)
T ss_pred             EECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence            864321      2357888999999999987653

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=88.27  E-value=11  Score=34.00  Aligned_cols=96  Identities=10%  Similarity=-0.015  Sum_probs=59.6

Q ss_pred             hcccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC-CCC-----CC
Q 021975          162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRL-----PF  233 (304)
Q Consensus       162 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~l-----p~  233 (304)
                      ....++.+||=.|.  |.|..+..+++.. +.++++++.+++..+.+++.    +    .. .++..+- ...     ..
T Consensus       134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~~~~  203 (325)
T TIGR02825       134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL----G----FD-VAFNYKTVKSLEETLKKA  203 (325)
T ss_pred             hCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C----CC-EEEeccccccHHHHHHHh
Confidence            34456788988884  4677777777763 34899999998887777551    1    11 1111111 010     01


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ..+.+|+|+-.-     ..  ..+....+.|+++|+++...
T Consensus       204 ~~~gvdvv~d~~-----G~--~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       204 SPDGYDCYFDNV-----GG--EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             CCCCeEEEEECC-----CH--HHHHHHHHHhCcCcEEEEec
Confidence            124588887532     22  24688899999999998654

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.96  E-value=0.19  Score=38.44  Aligned_cols=45  Identities=24%  Similarity=0.496  Sum_probs=29.8

Q ss_pred             cCCeeeccCCCccccccCC--CCccccccccCceeeCCCCccccCCC
Q 021975           57 EGDLFSCPICYEPLIRKGP--TGLTLGAIYRSGFKCRKCDKTYSSKD  101 (304)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~--~~~~~~~i~~~~l~C~~C~~~~~~~~  101 (304)
                      ...+++||+|..+..-...  .-..++.-|+..-.|.+||..|+..+
T Consensus        36 eati~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwte   82 (160)
T COG4306          36 EATITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTE   82 (160)
T ss_pred             hHHHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHH
Confidence            3467899999998643221  12234444556678999999997653

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=87.81  E-value=0.3  Score=41.86  Aligned_cols=40  Identities=15%  Similarity=0.460  Sum_probs=22.6

Q ss_pred             eeeccCCCccccccCC----C-------Cc-----cccccccCceeeCCCCccccC
Q 021975           60 LFSCPICYEPLIRKGP----T-------GL-----TLGAIYRSGFKCRKCDKTYSS   99 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~----~-------~~-----~~~~i~~~~l~C~~C~~~~~~   99 (304)
                      .+.||+|++.+.....    .       +.     ..+-.....++||+||.....
T Consensus         5 ~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~   60 (214)
T PF09986_consen    5 KITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFE   60 (214)
T ss_pred             ceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccc
Confidence            4789999997533110    0       00     112222346789999876533

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=87.80  E-value=0.38  Score=29.24  Aligned_cols=33  Identities=12%  Similarity=0.140  Sum_probs=21.8

Q ss_pred             cCCeeeccCCCccccccCCCCccccccccCceeeCCCCc
Q 021975           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK   95 (304)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~   95 (304)
                      .+-.+.||.|+..+......      .......|+.||.
T Consensus         2 p~Y~y~C~~Cg~~fe~~~~~------~~~~~~~CP~Cg~   34 (41)
T smart00834        2 PIYEYRCEDCGHTFEVLQKI------SDDPLATCPECGG   34 (41)
T ss_pred             CCEEEEcCCCCCEEEEEEec------CCCCCCCCCCCCC
Confidence            34568999999976443311      0125788999997

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=87.77  E-value=1.7  Score=34.77  Aligned_cols=42  Identities=19%  Similarity=0.173  Sum_probs=27.4

Q ss_pred             EEcCCcc--HHHHHHH--HhCCCCeEEEEeCCHHHHHHHHHH--HHhc
Q 021975          172 DVSCGSG--LFSRKFA--KSGTYSGVVALDFSENMLRQCYDF--IKQD  213 (304)
Q Consensus       172 DiGcG~G--~~~~~l~--~~~~~~~v~giD~s~~~~~~a~~~--~~~~  213 (304)
                      |||+..|  .....+.  ..++..+++++|+++...+..+++  +...
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            8999999  5555443  346677999999999999988888  5443

; PDB: 2PY6_A.

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=87.66  E-value=1.3  Score=43.45  Aligned_cols=105  Identities=17%  Similarity=0.173  Sum_probs=62.0

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--  231 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--  231 (304)
                      +++-..|--..++..|||+||.+|.|+....+..| ++-|+|+|+-|--              ..+++..++.|+..-  
T Consensus        33 lQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------------p~~~c~t~v~dIttd~c   98 (780)
T KOG1098|consen   33 LQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------------PIPNCDTLVEDITTDEC   98 (780)
T ss_pred             HHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------------cCCccchhhhhhhHHHH
Confidence            33444444445678899999999999998888743 6689999996621              234444444454321  


Q ss_pred             --C----CCCCccceEEecchhccCC-----CH-------HHHHHHHHHhcccCcEEEEEE
Q 021975          232 --P----FASGFVDAVHAGAALHCWP-----SP-------SNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       232 --p----~~~~~fD~V~~~~vl~h~~-----d~-------~~~l~~~~r~LkpgG~lvi~~  274 (304)
                        +    ...-..|+|+..+. +.+.     |.       ...++-....|..||.++--.
T Consensus        99 r~~l~k~l~t~~advVLhDga-pnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkv  158 (780)
T KOG1098|consen   99 RSKLRKILKTWKADVVLHDGA-PNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKV  158 (780)
T ss_pred             HHHHHHHHHhCCCcEEeecCC-CccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccc
Confidence              1    11234577765432 1111     11       134566677889999954433

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=87.63  E-value=2.6  Score=37.07  Aligned_cols=86  Identities=22%  Similarity=0.270  Sum_probs=58.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .++...+|+|+..|.++..|.+.+-  .|+++|.-+ |.+..-.         ...++....|-....-.....|-.+|.
T Consensus       210 ~~~M~avDLGAcPGGWTyqLVkr~m--~V~aVDng~-ma~sL~d---------tg~v~h~r~DGfk~~P~r~~idWmVCD  277 (358)
T COG2933         210 APGMWAVDLGACPGGWTYQLVKRNM--RVYAVDNGP-MAQSLMD---------TGQVTHLREDGFKFRPTRSNIDWMVCD  277 (358)
T ss_pred             cCCceeeecccCCCccchhhhhcce--EEEEeccch-hhhhhhc---------ccceeeeeccCcccccCCCCCceEEee
Confidence            4688999999999999999999976  999999654 3332222         356777777776654334567777775


Q ss_pred             chhccCCCHHHHHHHHHHhccc
Q 021975          245 AALHCWPSPSNAVAEISRILRS  266 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~Lkp  266 (304)
                      .|    ..|.++-.-+...|..
T Consensus       278 mV----EkP~rv~~li~~Wl~n  295 (358)
T COG2933         278 MV----EKPARVAALIAKWLVN  295 (358)
T ss_pred             hh----cCcHHHHHHHHHHHHc
Confidence            53    4565555555555543

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=87.59  E-value=0.32  Score=38.17  Aligned_cols=41  Identities=20%  Similarity=0.517  Sum_probs=26.7

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCe
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNY  103 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~  103 (304)
                      .+..||.|++.. ......... .  .+.++|+.|+..|....|+
T Consensus        29 ~~~~cP~C~s~~-~~k~g~~~~-~--~qRyrC~~C~~tf~~~~~~   69 (129)
T COG3677          29 TKVNCPRCKSSN-VVKIGGIRR-G--HQRYKCKSCGSTFTVETGS   69 (129)
T ss_pred             ccCcCCCCCccc-eeeECCccc-c--ccccccCCcCcceeeeccC
Confidence            457899999987 222111111 1  3789999999988666554

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=87.55  E-value=6.9  Score=29.33  Aligned_cols=87  Identities=16%  Similarity=0.100  Sum_probs=55.3

Q ss_pred             CCccHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----CCCCccceEEecchhc
Q 021975          175 CGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVHAGAALH  248 (304)
Q Consensus       175 cG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~V~~~~vl~  248 (304)
                      ||.|.++..+.+..  ....++.+|.+++.++.+++          ..+.++.+|..+..    ..-...|.|++..   
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----------~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~---   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----------EGVEVIYGDATDPEVLERAGIEKADAVVILT---   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----------TTSEEEES-TTSHHHHHHTTGGCESEEEEES---
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----------cccccccccchhhhHHhhcCccccCEEEEcc---
Confidence            45566665555431  12389999999999888877          45789999997742    2234677777653   


Q ss_pred             cCCCHH--HHHHHHHHhcccCcEEEEEEeC
Q 021975          249 CWPSPS--NAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       249 h~~d~~--~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                        ++..  ..+....+.+.|...++.....
T Consensus        71 --~~d~~n~~~~~~~r~~~~~~~ii~~~~~   98 (116)
T PF02254_consen   71 --DDDEENLLIALLARELNPDIRIIARVND   98 (116)
T ss_dssp             --SSHHHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred             --CCHHHHHHHHHHHHHHCCCCeEEEEECC
Confidence              2333  2445566677788787776643

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=87.54  E-value=0.54  Score=27.25  Aligned_cols=27  Identities=19%  Similarity=0.496  Sum_probs=18.3

Q ss_pred             eeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      +.|..|+........          ..++|+.||+.-
T Consensus         1 Y~C~~Cg~~~~~~~~----------~~irC~~CG~RI   27 (32)
T PF03604_consen    1 YICGECGAEVELKPG----------DPIRCPECGHRI   27 (32)
T ss_dssp             EBESSSSSSE-BSTS----------STSSBSSSS-SE
T ss_pred             CCCCcCCCeeEcCCC----------CcEECCcCCCeE
Confidence            368899998764332          568999999864

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>PRK12495 hypothetical protein; Provisional

Probab=87.43  E-value=0.33  Score=41.06  Aligned_cols=31  Identities=19%  Similarity=0.466  Sum_probs=25.2

Q ss_pred             cCCeeeccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      .|..+.|+.||.++....           +..+|+.|+..+.
T Consensus        39 tmsa~hC~~CG~PIpa~p-----------G~~~Cp~CQ~~~~   69 (226)
T PRK12495         39 TMTNAHCDECGDPIFRHD-----------GQEFCPTCQQPVT   69 (226)
T ss_pred             ccchhhcccccCcccCCC-----------CeeECCCCCCccc
Confidence            566788999999997532           7899999998764

>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]

Probab=87.38  E-value=0.33  Score=45.41  Aligned_cols=33  Identities=27%  Similarity=0.582  Sum_probs=25.6

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCC
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~  101 (304)
                      ..-.||.||..+...+.          +.++|++||..++...
T Consensus       349 ~~p~Cp~Cg~~m~S~G~----------~g~rC~kCg~~~~~~~  381 (421)
T COG1571         349 VNPVCPRCGGRMKSAGR----------NGFRCKKCGTRARETL  381 (421)
T ss_pred             cCCCCCccCCchhhcCC----------CCcccccccccCCccc
Confidence            44589999999866553          4899999999885553

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.21  E-value=14  Score=31.36  Aligned_cols=104  Identities=19%  Similarity=0.189  Sum_probs=60.6

Q ss_pred             CCCeEEEEcCCcc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975          166 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (304)
                      ++++||-.|++.|  . ....+.+.|.  +|++++-++...+...+.....     .++.++.+|+.+..     +.   
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~   76 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNENKLKRMKKTLSKY-----GNIHYVVGDVSSTESARNVIEKAA   76 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc-----CCeEEEECCCCCHHHHHHHHHHHH
Confidence            3568999998643  2 2344445555  9999999887666554433321     35788889987632     00   


Q ss_pred             --CCccceEEecchhccC---CC--------------HHHHHHHHHHhcccCcEEEEEEeC
Q 021975          235 --SGFVDAVHAGAALHCW---PS--------------PSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       235 --~~~fD~V~~~~vl~h~---~d--------------~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                        -+.+|.++........   .+              +..+++.+.+.++.+|.+++....
T Consensus        77 ~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~  137 (238)
T PRK05786         77 KVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM  137 (238)
T ss_pred             HHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence              1346777765432110   01              112356666777788887776643

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=87.10  E-value=11  Score=33.91  Aligned_cols=97  Identities=19%  Similarity=0.152  Sum_probs=59.3

Q ss_pred             cccCCCeEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CCCCccce
Q 021975          163 KSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDA  240 (304)
Q Consensus       163 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~  240 (304)
                      ...++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++. .       .. .++...-.... -..+.+|+
T Consensus       159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~-g-------~~-~~~~~~~~~~~~~~~~~~d~  228 (330)
T cd08245         159 GPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKL-G-------AD-EVVDSGAELDEQAAAGGADV  228 (330)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh-C-------Cc-EEeccCCcchHHhccCCCCE
Confidence            44567788888987 576666666663 34899999999888777542 1       11 11111100000 01245888


Q ss_pred             EEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ++....     . ...+.++.+.|+++|.++....
T Consensus       229 vi~~~~-----~-~~~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         229 ILVTVV-----S-GAAAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             EEECCC-----c-HHHHHHHHHhcccCCEEEEECC
Confidence            876421     1 2357888999999999887653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.04  E-value=0.35  Score=33.83  Aligned_cols=36  Identities=22%  Similarity=0.564  Sum_probs=24.3

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCC
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g  102 (304)
                      ++.||+|+-.+.-..-.++       ..=.|+.|+-++..+..
T Consensus         1 ~llCP~C~v~l~~~~rs~v-------EiD~CPrCrGVWLDrGE   36 (88)
T COG3809           1 MLLCPICGVELVMSVRSGV-------EIDYCPRCRGVWLDRGE   36 (88)
T ss_pred             CcccCcCCceeeeeeecCc-------eeeeCCccccEeecchh
Confidence            4689999998855442211       34579999988866543

>PRK13699 putative methylase; Provisional

Probab=86.93  E-value=0.46  Score=41.14  Aligned_cols=52  Identities=15%  Similarity=0.214  Sum_probs=32.7

Q ss_pred             EEEEccCCCC--CCCCCccceEEecchh----ccC-C----------CHHHHHHHHHHhcccCcEEEEE
Q 021975          222 ALVRADVCRL--PFASGFVDAVHAGAAL----HCW-P----------SPSNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       222 ~~~~~d~~~l--p~~~~~fD~V~~~~vl----~h~-~----------d~~~~l~~~~r~LkpgG~lvi~  273 (304)
                      +++.+|..+.  .++++++|+|+..--.    .+. .          -....+.++.|+|||||.+++.
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if   71 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF   71 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            4556666443  3567778888775211    100 0          0136789999999999988764

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=86.84  E-value=8.9  Score=34.73  Aligned_cols=98  Identities=14%  Similarity=0.083  Sum_probs=58.5

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC---C-C-CC
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---L-P-FA  234 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---l-p-~~  234 (304)
                      ....++.+||=+|+|. |.++..+++.. +.+ ++++|.+++..+.+++.    +    .. .++...-.+   + . ..
T Consensus       159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~----g----a~-~~i~~~~~~~~~~~~~~~  228 (339)
T cd08239         159 VGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKAL----G----AD-FVINSGQDDVQEIRELTS  228 (339)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh----C----CC-EEEcCCcchHHHHHHHhC
Confidence            3445678888888763 55556666653 235 99999999888777652    1    11 111111000   0 0 11


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ...+|+|+-.-     .. ...+....+.|+++|++++...
T Consensus       229 ~~~~d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         229 GAGADVAIECS-----GN-TAARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             CCCCCEEEECC-----CC-HHHHHHHHHHhhcCCEEEEEcC
Confidence            23689888542     12 2346777889999999987654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=86.36  E-value=13  Score=34.08  Aligned_cols=97  Identities=11%  Similarity=0.038  Sum_probs=60.5

Q ss_pred             cccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc----cCCC-C-CCC
Q 021975          163 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA----DVCR-L-PFA  234 (304)
Q Consensus       163 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~----d~~~-l-p~~  234 (304)
                      ...++.+||=.|+  |.|..+.++++.. +.++++++.+++..+.+++.+.       .. .++..    +... + ...
T Consensus       155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lG-------a~-~vi~~~~~~~~~~~i~~~~  225 (348)
T PLN03154        155 SPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLG-------FD-EAFNYKEEPDLDAALKRYF  225 (348)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcC-------CC-EEEECCCcccHHHHHHHHC
Confidence            3456889999997  3677877787773 3489999998887777653221       11 12211    1100 0 011


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .+.+|+|+-.-     .  ...+....+.|++||++++...
T Consensus       226 ~~gvD~v~d~v-----G--~~~~~~~~~~l~~~G~iv~~G~  259 (348)
T PLN03154        226 PEGIDIYFDNV-----G--GDMLDAALLNMKIHGRIAVCGM  259 (348)
T ss_pred             CCCcEEEEECC-----C--HHHHHHHHHHhccCCEEEEECc
Confidence            23588887532     2  2367888999999999887653

>PRK07806 short chain dehydrogenase; Provisional

Probab=86.27  E-value=14  Score=31.62  Aligned_cols=102  Identities=18%  Similarity=0.109  Sum_probs=56.8

Q ss_pred             CCeEEEEcCCcc--H-HHHHHHHhCCCCeEEEEeCCH-HHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975          167 GGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSE-NMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (304)
Q Consensus       167 ~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~-~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (304)
                      ++++|-.|+..|  . +...|.+.+.  +|++++-+. ...+.....++..+    .++.++.+|+.+..     +.   
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~~~~~~   79 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG----GRASAVGADLTDEESVAALMDTAR   79 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC----CceEEEEcCCCCHHHHHHHHHHHH
Confidence            568888886433  2 3344445555  888887654 23333333333322    46788889987632     00   


Q ss_pred             --CCccceEEecchhccCC-------------CHHHHHHHHHHhcccCcEEEEEE
Q 021975          235 --SGFVDAVHAGAALHCWP-------------SPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       235 --~~~fD~V~~~~vl~h~~-------------d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                        -+.+|+|+.........             -+..+++.+.+.++.+|.+++..
T Consensus        80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is  134 (248)
T PRK07806         80 EEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT  134 (248)
T ss_pred             HhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence              13578877654322110             12356677777777677766554

>PLN02740 Alcohol dehydrogenase-like

Probab=86.27  E-value=8.6  Score=35.71  Aligned_cols=99  Identities=15%  Similarity=0.168  Sum_probs=59.6

Q ss_pred             cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC--C-----CCC
Q 021975          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--L-----PFA  234 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--l-----p~~  234 (304)
                      ...++.+||=+|+|. |..+..+++.....+|+++|.+++..+.+++.    +    .. .++...-.+  .     .+.
T Consensus       195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----G----a~-~~i~~~~~~~~~~~~v~~~~  265 (381)
T PLN02740        195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----G----IT-DFINPKDSDKPVHERIREMT  265 (381)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----C----Cc-EEEecccccchHHHHHHHHh
Confidence            345678999999874 55666666664223699999999888888652    1    11 122111100  0     011


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEeC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFL  276 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~~  276 (304)
                      .+.+|+|+-.-     ..+ ..+......+++| |++++....
T Consensus       266 ~~g~dvvid~~-----G~~-~~~~~a~~~~~~g~G~~v~~G~~  302 (381)
T PLN02740        266 GGGVDYSFECA-----GNV-EVLREAFLSTHDGWGLTVLLGIH  302 (381)
T ss_pred             CCCCCEEEECC-----CCh-HHHHHHHHhhhcCCCEEEEEccC
Confidence            22588887643     223 4577788889897 988775543

>PF14354 Lar_restr_allev: Restriction alleviation protein Lar

Probab=86.12  E-value=0.54  Score=31.45  Aligned_cols=35  Identities=20%  Similarity=0.419  Sum_probs=19.9

Q ss_pred             CeeeccCCCccccccCCCCc-cccccccCceeeCCCCc
Q 021975           59 DLFSCPICYEPLIRKGPTGL-TLGAIYRSGFKCRKCDK   95 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~-~~~~i~~~~l~C~~C~~   95 (304)
                      ++..||.||++-........ .....  -.+.|..||.
T Consensus         2 ~LkPCPFCG~~~~~~~~~~~~~~~~~--~~V~C~~Cga   37 (61)
T PF14354_consen    2 ELKPCPFCGSADVLIRQDEGFDYGMY--YYVECTDCGA   37 (61)
T ss_pred             CCcCCCCCCCcceEeecccCCCCCCE--EEEEcCCCCC
Confidence            46789999876544332111 11110  3567999987

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=86.03  E-value=5.5  Score=32.62  Aligned_cols=110  Identities=15%  Similarity=0.101  Sum_probs=63.1

Q ss_pred             EcCCccHHHHHHHHhCC-CCeEEEEeCCH--HHHHHHH---HHHHhcCccCCCCeE-EEEccCCCCC----CCCCccceE
Q 021975          173 VSCGSGLFSRKFAKSGT-YSGVVALDFSE--NMLRQCY---DFIKQDNTILTSNLA-LVRADVCRLP----FASGFVDAV  241 (304)
Q Consensus       173 iGcG~G~~~~~l~~~~~-~~~v~giD~s~--~~~~~a~---~~~~~~~~~~~~~i~-~~~~d~~~lp----~~~~~fD~V  241 (304)
                      ||=|.=.|+..|++... ..++++.-.+.  ...+...   ++++...   ..++. ....|+..+.    ...+.||.|
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~---~~g~~V~~~VDat~l~~~~~~~~~~FDrI   79 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR---ELGVTVLHGVDATKLHKHFRLKNQRFDRI   79 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh---hcCCccccCCCCCcccccccccCCcCCEE
Confidence            56666667788887743 44565554433  2222221   2332221   12222 3345666554    356889999


Q ss_pred             EecchhccCC------C---------HHHHHHHHHHhcccCcEEEEEEeCCCCCCccccccc
Q 021975          242 HAGAALHCWP------S---------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV  288 (304)
Q Consensus       242 ~~~~vl~h~~------d---------~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~~~~~  288 (304)
                      +.++-  |+.      +         ...++..+..+|+++|.+.++-... .+...|....
T Consensus        80 iFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~-~py~~W~i~~  138 (166)
T PF10354_consen   80 IFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG-QPYDSWNIEE  138 (166)
T ss_pred             EEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-CCCccccHHH
Confidence            98753  443      0         1257889999999999998887655 3345554443

>PTZ00255 60S ribosomal protein L37a; Provisional

Probab=85.84  E-value=0.4  Score=34.82  Aligned_cols=31  Identities=23%  Similarity=0.701  Sum_probs=22.2

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      ....||.|+..-.....         .+.|.|..|+..+.
T Consensus        35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~A   65 (90)
T PTZ00255         35 AKYFCPFCGKHAVKRQA---------VGIWRCKGCKKTVA   65 (90)
T ss_pred             CCccCCCCCCCceeeee---------eEEEEcCCCCCEEe
Confidence            45889999985433221         27899999998763

>TIGR00244 transcriptional regulator NrdR

Probab=85.66  E-value=0.47  Score=37.76  Aligned_cols=42  Identities=21%  Similarity=0.493  Sum_probs=27.4

Q ss_pred             eeccCCCccccccCCCCcc-ccccccCceeeCCCCccccCCCC
Q 021975           61 FSCPICYEPLIRKGPTGLT-LGAIYRSGFKCRKCDKTYSSKDN  102 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~-~~~i~~~~l~C~~C~~~~~~~~g  102 (304)
                      +.||.|+.+-....+.+.. .+......=.|..||..|..-+-
T Consensus         1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyEr   43 (147)
T TIGR00244         1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTTFER   43 (147)
T ss_pred             CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccceeee
Confidence            4799999987665554432 23333345569999999855443

Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.

>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]

Probab=85.63  E-value=0.42  Score=38.02  Aligned_cols=43  Identities=16%  Similarity=0.400  Sum_probs=28.0

Q ss_pred             eeccCCCccccccCCCCcc-ccccccCceeeCCCCccccCCCCe
Q 021975           61 FSCPICYEPLIRKGPTGLT-LGAIYRSGFKCRKCDKTYSSKDNY  103 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~-~~~i~~~~l~C~~C~~~~~~~~g~  103 (304)
                      +.||.|++.-....+.+.. .+......-.|..||..|..-+-+
T Consensus         1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTTfE~~   44 (156)
T COG1327           1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTTFERA   44 (156)
T ss_pred             CCCCCCCCCCCeeeecccccccchhhhhhcccccccccchhhee
Confidence            4699999987665554432 222333455799999998654433

>PRK12939 short chain dehydrogenase; Provisional

Probab=85.54  E-value=7.8  Score=33.12  Aligned_cols=74  Identities=16%  Similarity=0.137  Sum_probs=46.6

Q ss_pred             CCCeEEEEcCCccHHHHH----HHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC--
Q 021975          166 QGGLLVDVSCGSGLFSRK----FAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~----l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (304)
                      +++++|=.|++ |..+..    +.+.+.  ++++++-++..++...+.++..+    .++.++.+|+.+..     +.  
T Consensus         6 ~~~~vlItGa~-g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~   78 (250)
T PRK12939          6 AGKRALVTGAA-RGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG----GRAHAIAADLADPASVQRFFDAA   78 (250)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHH
Confidence            35678877763 444433    444565  89999988876665555544332    56889999987632     10  


Q ss_pred             ---CCccceEEecch
Q 021975          235 ---SGFVDAVHAGAA  246 (304)
Q Consensus       235 ---~~~fD~V~~~~v  246 (304)
                         -+.+|+|+....
T Consensus        79 ~~~~~~id~vi~~ag   93 (250)
T PRK12939         79 AAALGGLDGLVNNAG   93 (250)
T ss_pred             HHHcCCCCEEEECCC
Confidence               046898887654

>PRK06701 short chain dehydrogenase; Provisional

Probab=85.52  E-value=9.9  Score=33.83  Aligned_cols=104  Identities=17%  Similarity=0.228  Sum_probs=59.8

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCH-HHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC--
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSE-NMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~-~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (304)
                      +++++|-.|++.|-   ....+++.+.  +|+.++.+. ...+...+.++..+    .++.++.+|+.+..     +.  
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~i  118 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKEG----VKCLLIPGDVSDEAFCKDAVEET  118 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC----CeEEEEEccCCCHHHHHHHHHHH
Confidence            35788988875542   3455555665  888888764 23333333333322    46788899986632     11  


Q ss_pred             ---CCccceEEecchhccC----CC--H--------------HHHHHHHHHhcccCcEEEEEEe
Q 021975          235 ---SGFVDAVHAGAALHCW----PS--P--------------SNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 ---~~~fD~V~~~~vl~h~----~d--~--------------~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                         -+.+|+|+......+.    .+  .              ..+++.+.+.++++|.+++..-
T Consensus       119 ~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS  182 (290)
T PRK06701        119 VRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS  182 (290)
T ss_pred             HHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence               1357988876543221    11  1              1345666677777787776553

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=85.27  E-value=15  Score=33.02  Aligned_cols=98  Identities=14%  Similarity=0.114  Sum_probs=59.9

Q ss_pred             cccCCCeEEEEcCCc-cHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC----CCCCC
Q 021975          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASG  236 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~  236 (304)
                      ...++.+||-+|+|. |..+..+++.. +.+ ++.++.+++..+.+++.    +    .. .++..+-...    .....
T Consensus       156 ~~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~----g----~~-~~~~~~~~~~~~~~~~~~~  225 (334)
T cd08234         156 GIKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKL----G----AT-ETVDPSREDPEAQKEDNPY  225 (334)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh----C----Ce-EEecCCCCCHHHHHHhcCC
Confidence            345678899998653 55666666664 235 89999998887777542    1    11 2222211110    11235


Q ss_pred             ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .+|+|+....      ....+.++.+.|+++|.++.....
T Consensus       226 ~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~~  259 (334)
T cd08234         226 GFDVVIEATG------VPKTLEQAIEYARRGGTVLVFGVY  259 (334)
T ss_pred             CCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEecC
Confidence            6899986421      134688889999999999876543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=85.16  E-value=4.1  Score=36.42  Aligned_cols=90  Identities=16%  Similarity=0.174  Sum_probs=56.4

Q ss_pred             CeEEEEcCCc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          168 GLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       168 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      .+|+=+|.|-  |.+...+.+.++...++|.|.+...++.+.+          .++..-..+... -......|+|+..-
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----------lgv~d~~~~~~~-~~~~~~aD~Vivav   72 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----------LGVIDELTVAGL-AEAAAEADLVIVAV   72 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----------cCcccccccchh-hhhcccCCEEEEec
Confidence            4677888873  6678888888887778999999988877765          122222111100 11134579888754


Q ss_pred             hhccCCCHHHHHHHHHHhcccCcEEE
Q 021975          246 ALHCWPSPSNAVAEISRILRSGGVFV  271 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~lv  271 (304)
                      -+.   ....+++++...||+|..+.
T Consensus        73 Pi~---~~~~~l~~l~~~l~~g~iv~   95 (279)
T COG0287          73 PIE---ATEEVLKELAPHLKKGAIVT   95 (279)
T ss_pred             cHH---HHHHHHHHhcccCCCCCEEE
Confidence            332   23466777777777776554

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=85.12  E-value=0.71  Score=24.82  Aligned_cols=9  Identities=33%  Similarity=0.992  Sum_probs=6.6

Q ss_pred             CceeeCCCC
Q 021975           86 SGFKCRKCD   94 (304)
Q Consensus        86 ~~l~C~~C~   94 (304)
                      ..+.|++||
T Consensus        15 v~f~CPnCG   23 (24)
T PF07754_consen   15 VPFPCPNCG   23 (24)
T ss_pred             ceEeCCCCC
Confidence            467788886

It is likely to bind zinc via its four well-conserved cysteine residues.

>PF13453 zf-TFIIB: Transcription factor zinc-finger

Probab=85.09  E-value=0.43  Score=29.26  Aligned_cols=30  Identities=23%  Similarity=0.444  Sum_probs=20.1

Q ss_pred             eccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      .||.|+..+.....     +.+  ....|++|+-.+.
T Consensus         1 ~CP~C~~~l~~~~~-----~~~--~id~C~~C~G~W~   30 (41)
T PF13453_consen    1 KCPRCGTELEPVRL-----GDV--EIDVCPSCGGIWF   30 (41)
T ss_pred             CcCCCCcccceEEE-----CCE--EEEECCCCCeEEc
Confidence            49999998754332     111  4678999986653

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=85.01  E-value=12  Score=32.64  Aligned_cols=95  Identities=19%  Similarity=0.194  Sum_probs=57.9

Q ss_pred             cccCCCeEEEEcCCc-cHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccce
Q 021975          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (304)
                      ...++.+||-.|+|. |..+..+++.. +.+ +++++.+++..+.+++.- .     ...+  +... .. ......+|+
T Consensus        94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g-~-----~~~~--~~~~-~~-~~~~~~~d~  162 (277)
T cd08255          94 EPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALG-P-----ADPV--AADT-AD-EIGGRGADV  162 (277)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcC-C-----Cccc--cccc-hh-hhcCCCCCE
Confidence            345677888888765 66666666653 236 999999988877666521 0     0111  1100 00 012346898


Q ss_pred             EEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      |+....      ....+.+..+.|+++|.++...
T Consensus       163 vl~~~~------~~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         163 VIEASG------SPSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             EEEccC------ChHHHHHHHHHhcCCcEEEEEe
Confidence            886421      1235788899999999988654

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>TIGR00280 L37a ribosomal protein L37a

Probab=84.99  E-value=0.42  Score=34.78  Aligned_cols=30  Identities=27%  Similarity=0.881  Sum_probs=21.8

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ....||.|+..-.....         .+.|.|..|+..+
T Consensus        34 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~   63 (91)
T TIGR00280        34 AKYVCPFCGKKTVKRGS---------TGIWTCRKCGAKF   63 (91)
T ss_pred             cCccCCCCCCCceEEEe---------eEEEEcCCCCCEE
Confidence            45889999975433221         2789999999876

This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.

>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]

Probab=84.97  E-value=0.56  Score=38.93  Aligned_cols=37  Identities=14%  Similarity=0.382  Sum_probs=21.6

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~   99 (304)
                      .+.||.|++.-....-  +. ....+..++|..||++++.
T Consensus         6 y~~Cp~Cg~eev~hEV--ik-~~g~~~lvrC~eCG~V~~~   42 (201)
T COG1326           6 YIECPSCGSEEVSHEV--IK-ERGREPLVRCEECGTVHPA   42 (201)
T ss_pred             EEECCCCCcchhhHHH--HH-hcCCceEEEccCCCcEeec
Confidence            4789999953221000  00 0112257899999999844

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=84.86  E-value=11  Score=34.10  Aligned_cols=115  Identities=11%  Similarity=0.096  Sum_probs=77.7

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---  232 (304)
                      .+...+... ...|+-+|||-=  ++...-.++ ...|+-+|. |+.++.=++.++..+.......+++..|+.+-.   
T Consensus        84 ~~~~~~~~g-~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~  159 (297)
T COG3315          84 FVRAALDAG-IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQ  159 (297)
T ss_pred             HHHHHHHhc-ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHH
Confidence            344444443 578999999853  333333333 357777774 777777777887776545558999999997422   


Q ss_pred             -C-----CCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEe
Q 021975          233 -F-----ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 -~-----~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                       +     ....--++++-+++-+++..  .++|+.|...+.||-.++....
T Consensus       160 ~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~  210 (297)
T COG3315         160 ALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS  210 (297)
T ss_pred             HHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence             2     23334478888888888744  4789999999988877776653

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=84.82  E-value=0.52  Score=40.18  Aligned_cols=93  Identities=13%  Similarity=0.079  Sum_probs=66.4

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (304)
                      +.+.+.+++.+.++...+|.--|.|..+..+.++.+..+++++|.+|-+-+.|+.-..+.-   .+.+.-+.+.+..++ 
T Consensus        31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~---~~~l~a~Lg~Fs~~~~  107 (303)
T KOG2782|consen   31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELM---HPTLKAVLGNFSYIKS  107 (303)
T ss_pred             ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhc---chhHHHHHhhhHHHHH
Confidence            3456677888889999999999999999999999888899999999988888776553221   222333333333322 


Q ss_pred             ------CCCCccceEEecchhcc
Q 021975          233 ------FASGFVDAVHAGAALHC  249 (304)
Q Consensus       233 ------~~~~~fD~V~~~~vl~h  249 (304)
                            +.+.++|.|++......
T Consensus       108 l~~~~gl~~~~vDGiLmDlGcSS  130 (303)
T KOG2782|consen  108 LIADTGLLDVGVDGILMDLGCSS  130 (303)
T ss_pred             HHHHhCCCcCCcceEEeecCccc
Confidence                  45678888888655433

>PLN02827 Alcohol dehydrogenase-like

Probab=84.80  E-value=13  Score=34.56  Aligned_cols=96  Identities=16%  Similarity=0.213  Sum_probs=56.5

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc-----CCC-C-CCCC
Q 021975          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-----VCR-L-PFAS  235 (304)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-----~~~-l-p~~~  235 (304)
                      ..++.+||-.|+|. |.++..+++......++++|.++...+.+++.    +    .. .++...     ... + ....
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----G----a~-~~i~~~~~~~~~~~~v~~~~~  261 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----G----VT-DFINPNDLSEPIQQVIKRMTG  261 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C----Cc-EEEcccccchHHHHHHHHHhC
Confidence            45678999998764 55666666653223689999999887777552    1    11 112111     000 0 0112


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEE
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTT  274 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~  274 (304)
                      +.+|+|+-.-     ..+ ..+....+.|++| |++++..
T Consensus       262 ~g~d~vid~~-----G~~-~~~~~~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        262 GGADYSFECV-----GDT-GIATTALQSCSDGWGLTVTLG  295 (378)
T ss_pred             CCCCEEEECC-----CCh-HHHHHHHHhhccCCCEEEEEC
Confidence            2588877532     222 3467788899998 9987654

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=84.73  E-value=1.7  Score=39.12  Aligned_cols=66  Identities=18%  Similarity=0.316  Sum_probs=51.0

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCccceEEecc
Q 021975          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHAGA  245 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~~~~  245 (304)
                      +++|+=||.|.+..-+...| ..-+.++|+++.+++.-+.+.        .  ....+|+..+.   ++. .+|+++...
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEecc
Confidence            68999999999999999998 347889999999988888864        2  67888987764   443 599999864


Q ss_pred             h
Q 021975          246 A  246 (304)
Q Consensus       246 v  246 (304)
                      -
T Consensus        70 P   70 (335)
T PF00145_consen   70 P   70 (335)
T ss_dssp             -
T ss_pred             C
Confidence            4

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>smart00531 TFIIE Transcription initiation factor IIE

Probab=84.66  E-value=0.41  Score=38.43  Aligned_cols=38  Identities=18%  Similarity=0.524  Sum_probs=24.4

Q ss_pred             cCCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      .-..+.||.|+............ +  ..+.+.|+.||..-
T Consensus        96 ~~~~Y~Cp~C~~~y~~~ea~~~~-d--~~~~f~Cp~Cg~~l  133 (147)
T smart00531       96 NNAYYKCPNCQSKYTFLEANQLL-D--MDGTFTCPRCGEEL  133 (147)
T ss_pred             CCcEEECcCCCCEeeHHHHHHhc-C--CCCcEECCCCCCEE
Confidence            34579999999876553322111 1  23569999999753

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=84.63  E-value=21  Score=33.39  Aligned_cols=104  Identities=15%  Similarity=0.182  Sum_probs=59.9

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc---cCCC-CC--CCCC
Q 021975          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA---DVCR-LP--FASG  236 (304)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~---d~~~-lp--~~~~  236 (304)
                      ..++.+||=.|+|. |..+..+++......++.+|.++..++.+++.    +    .. .+...   +... +.  ....
T Consensus       183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----G----a~-~v~~~~~~~~~~~v~~~~~~~  253 (393)
T TIGR02819       183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----G----CE-TVDLSKDATLPEQIEQILGEP  253 (393)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----C----Ce-EEecCCcccHHHHHHHHcCCC
Confidence            34577777788864 66666666653223466778888888887762    1    11 12111   1100 00  1123


Q ss_pred             ccceEEecchhcc--------CCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          237 FVDAVHAGAALHC--------WPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       237 ~fD~V~~~~vl~h--------~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .+|+|+-.-.-..        -.++...+++..+++++||++++.-..
T Consensus       254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence            5888875332110        012235789999999999999886654

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=84.57  E-value=0.71  Score=26.86  Aligned_cols=24  Identities=21%  Similarity=0.634  Sum_probs=16.7

Q ss_pred             eeccCCCccccccCCCCccccccccCceeeCCCCc
Q 021975           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK   95 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~   95 (304)
                      .+|++||--.....           ..++|+.||.
T Consensus         2 ~~C~~CGy~y~~~~-----------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE-----------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc-----------CCCcCcCCCC
Confidence            57899987543322           4678999986

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PRK05854 short chain dehydrogenase; Provisional

Probab=84.52  E-value=20  Score=32.28  Aligned_cols=78  Identities=18%  Similarity=0.199  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----------
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (304)
                      .++++|=.|++.|-   ....|++.|.  +|+.+.-+.+..+.+.+.+....  ...++.++.+|+.+..          
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~~Dl~d~~sv~~~~~~~~   88 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAV--PDAKLSLRALDLSSLASVAALGEQLR   88 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEEecCCCHHHHHHHHHHHH
Confidence            46788888876653   3455556665  99999988876666655554332  2346888999987742          


Q ss_pred             CCCCccceEEecchh
Q 021975          233 FASGFVDAVHAGAAL  247 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl  247 (304)
                      -..+..|+++.+..+
T Consensus        89 ~~~~~iD~li~nAG~  103 (313)
T PRK05854         89 AEGRPIHLLINNAGV  103 (313)
T ss_pred             HhCCCccEEEECCcc
Confidence            112468998887554

>PRK07109 short chain dehydrogenase; Provisional

Probab=84.38  E-value=18  Score=32.94  Aligned_cols=76  Identities=25%  Similarity=0.260  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-C--------
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F--------  233 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~--------  233 (304)
                      ++++||=.|++.|-   ....|++.|.  +|+.++-++..++...+.++..+    .++.++.+|+.+.. .        
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g----~~~~~v~~Dv~d~~~v~~~~~~~~   80 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG----GEALAVVADVADAEAVQAAADRAE   80 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHHHHHHHH
Confidence            35678888875542   3344556665  89999998887776666555443    56888899987632 0        


Q ss_pred             -CCCccceEEecchh
Q 021975          234 -ASGFVDAVHAGAAL  247 (304)
Q Consensus       234 -~~~~fD~V~~~~vl  247 (304)
                       .-+.+|+++.+...
T Consensus        81 ~~~g~iD~lInnAg~   95 (334)
T PRK07109         81 EELGPIDTWVNNAMV   95 (334)
T ss_pred             HHCCCCCEEEECCCc
Confidence             01468988876543

>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr

Probab=84.31  E-value=0.47  Score=30.12  Aligned_cols=40  Identities=15%  Similarity=0.286  Sum_probs=24.3

Q ss_pred             eccCCCccccccCCCCccccccccCceeeCC--CCccccCCCC
Q 021975           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK--CDKTYSSKDN  102 (304)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~--C~~~~~~~~g  102 (304)
                      .||.||+......-. .-.+...+....|.+  ||+.|.....
T Consensus         1 ~CP~Cg~~a~ir~S~-~~s~~~~~~Y~qC~N~~Cg~tfv~~~~   42 (47)
T PF04606_consen    1 RCPHCGSKARIRTSR-QLSPLTRELYCQCTNPECGHTFVANLE   42 (47)
T ss_pred             CcCCCCCeeEEEEch-hhCcceEEEEEEECCCcCCCEEEEEEE
Confidence            499999976443211 112333445778987  9998855433

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=84.18  E-value=9.2  Score=35.26  Aligned_cols=96  Identities=17%  Similarity=0.177  Sum_probs=53.2

Q ss_pred             cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEE-ccCCCCCCCCCccceEE
Q 021975          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAVH  242 (304)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~~~fD~V~  242 (304)
                      .++.+||-.|+|. |.++..+++.. +.++++++.+......+.+.   .+    .. .++. .+...+.-..+.+|+|+
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~---~G----a~-~vi~~~~~~~~~~~~~~~D~vi  252 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINR---LG----AD-SFLVSTDPEKMKAAIGTMDYII  252 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHh---CC----Cc-EEEcCCCHHHHHhhcCCCCEEE
Confidence            4577888899874 66666666663 34888888776543222221   11    11 1111 11001100012478777


Q ss_pred             ecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      -.-     ..+ ..+.+..+.|++||+++....
T Consensus       253 d~~-----g~~-~~~~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        253 DTV-----SAV-HALGPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             ECC-----CCH-HHHHHHHHHhcCCcEEEEeCC
Confidence            532     222 357888999999999887653

>PRK14892 putative transcription elongation factor Elf1; Provisional

Probab=84.01  E-value=0.74  Score=34.23  Aligned_cols=33  Identities=21%  Similarity=0.406  Sum_probs=20.8

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ..+.||.|+....... -+.     -.....|+.||..+
T Consensus        20 t~f~CP~Cge~~v~v~-~~k-----~~~h~~C~~CG~y~   52 (99)
T PRK14892         20 KIFECPRCGKVSISVK-IKK-----NIAIITCGNCGLYT   52 (99)
T ss_pred             cEeECCCCCCeEeeee-cCC-----CcceEECCCCCCcc
Confidence            5799999996322111 000     12578999999876

>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed

Probab=83.84  E-value=0.48  Score=34.41  Aligned_cols=30  Identities=27%  Similarity=0.800  Sum_probs=21.7

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ....||.|+..-.....         .+.|.|..|+..+
T Consensus        35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~   64 (90)
T PRK03976         35 AKHVCPVCGRPKVKRVG---------TGIWECRKCGAKF   64 (90)
T ss_pred             cCccCCCCCCCceEEEE---------EEEEEcCCCCCEE
Confidence            45889999876433221         2789999999876

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=83.66  E-value=20  Score=33.12  Aligned_cols=99  Identities=16%  Similarity=0.147  Sum_probs=58.9

Q ss_pred             cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc-CCCC-----CCCC
Q 021975          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-VCRL-----PFAS  235 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-~~~l-----p~~~  235 (304)
                      ...++.+||=.|+|. |..+..+++.....+|+++|.++...+.+++.    +    ....+-..+ -..+     ....
T Consensus       182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----G----a~~~i~~~~~~~~~~~~v~~~~~  253 (368)
T TIGR02818       182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----G----ATDCVNPNDYDKPIQEVIVEITD  253 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----C----CCeEEcccccchhHHHHHHHHhC
Confidence            345678899999864 66666677664223799999999988888652    1    111111110 0000     0112


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEe
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~  275 (304)
                      +.+|+|+-.-     .. ...+.+..+.+++| |++++...
T Consensus       254 ~g~d~vid~~-----G~-~~~~~~~~~~~~~~~G~~v~~g~  288 (368)
T TIGR02818       254 GGVDYSFECI-----GN-VNVMRAALECCHKGWGESIIIGV  288 (368)
T ss_pred             CCCCEEEECC-----CC-HHHHHHHHHHhhcCCCeEEEEec
Confidence            3578776532     22 23577788899886 98887654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=83.59  E-value=18  Score=29.52  Aligned_cols=108  Identities=17%  Similarity=0.149  Sum_probs=62.3

Q ss_pred             HHHHHHHHhhcc--cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          153 EEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       153 ~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      +..+.+.+.+..  ....+|+-|||=+-.....- ...+..+++.+|++......        +    .+ .|+.=|...
T Consensus        10 ~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~--------~----~~-~F~fyD~~~   75 (162)
T PF10237_consen   10 ETAEFLARELLDGALDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQF--------G----GD-EFVFYDYNE   75 (162)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhc--------C----Cc-ceEECCCCC
Confidence            333444444433  34679999999876544333 13345699999998754321        1    22 344445533


Q ss_pred             ---CC--CCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          231 ---LP--FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       231 ---lp--~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                         +|  + .++||+|++.--+  +.+.  ..+...+.-++|+++.+++.+...
T Consensus        76 p~~~~~~l-~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~Tg~~  126 (162)
T PF10237_consen   76 PEELPEEL-KGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCTGEE  126 (162)
T ss_pred             hhhhhhhc-CCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence               22  3 5799999995333  1111  133455555668889999888543

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=83.49  E-value=16  Score=33.24  Aligned_cols=98  Identities=13%  Similarity=0.105  Sum_probs=57.0

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC---C--CCCCCc
Q 021975          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---L--PFASGF  237 (304)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---l--p~~~~~  237 (304)
                      ..++.+||=.|+|. |..+..+++......+++++.+++..+.+++.    +    .. .++..+-..   +  ......
T Consensus       158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----G----a~-~~i~~~~~~~~~~~~~~~~~~  228 (347)
T PRK10309        158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----G----AM-QTFNSREMSAPQIQSVLRELR  228 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C----Cc-eEecCcccCHHHHHHHhcCCC
Confidence            34577888888864 55666666664222478999999887777541    1    11 111111000   0  011235


Q ss_pred             cc-eEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          238 VD-AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       238 fD-~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +| +|+-     .+.. ...+.+..+.|++||++++....
T Consensus       229 ~d~~v~d-----~~G~-~~~~~~~~~~l~~~G~iv~~G~~  262 (347)
T PRK10309        229 FDQLILE-----TAGV-PQTVELAIEIAGPRAQLALVGTL  262 (347)
T ss_pred             CCeEEEE-----CCCC-HHHHHHHHHHhhcCCEEEEEccC
Confidence            67 5443     2222 34678889999999999887543

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=83.40  E-value=0.92  Score=42.45  Aligned_cols=69  Identities=25%  Similarity=0.338  Sum_probs=54.2

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCC-eEEEEccCC
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN-LALVRADVC  229 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~-i~~~~~d~~  229 (304)
                      -+.+..+++  ++..|-|+-||.|.+..-++.++.  .|++-|.+++++++.+.+++.+.  ..+. +..+..|+.
T Consensus       240 herlsg~fk--~gevv~D~FaGvGPfa~Pa~kK~c--rV~aNDLNpesik~Lk~ni~lNk--v~~~~iei~Nmda~  309 (495)
T KOG2078|consen  240 HERLSGLFK--PGEVVCDVFAGVGPFALPAAKKGC--RVYANDLNPESIKWLKANIKLNK--VDPSAIEIFNMDAK  309 (495)
T ss_pred             HHHHhhccC--CcchhhhhhcCcCccccchhhcCc--EEEecCCCHHHHHHHHHhccccc--cchhheeeecccHH
Confidence            344445443  478999999999999999999875  99999999999999999988776  3333 777766653

>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]

Probab=83.36  E-value=0.63  Score=34.07  Aligned_cols=35  Identities=26%  Similarity=0.609  Sum_probs=26.4

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccccCCC
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~  101 (304)
                      ++-||.||.-|......      . -..+.|+.|...+++..
T Consensus         1 m~FCP~Cgn~Live~g~------~-~~rf~C~tCpY~~~I~~   35 (105)
T KOG2906|consen    1 MLFCPTCGNMLIVESGE------S-CNRFSCRTCPYVFPISR   35 (105)
T ss_pred             CcccCCCCCEEEEecCC------e-EeeEEcCCCCceeeEee
Confidence            46799999988775532      1 25789999999987774

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=83.05  E-value=0.77  Score=37.50  Aligned_cols=25  Identities=20%  Similarity=0.518  Sum_probs=20.4

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (304)
                      .++||+||-.... .           ..-+||.||+.
T Consensus       134 ~~vC~vCGy~~~g-e-----------~P~~CPiCga~  158 (166)
T COG1592         134 VWVCPVCGYTHEG-E-----------APEVCPICGAP  158 (166)
T ss_pred             EEEcCCCCCcccC-C-----------CCCcCCCCCCh
Confidence            7999999987755 3           46799999974

>TIGR00518 alaDH alanine dehydrogenase

Probab=82.99  E-value=2.9  Score=38.94  Aligned_cols=102  Identities=17%  Similarity=0.150  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      ++.+|+=+|+|. |......+... +.+|+.+|.++...+.+...+.       ..+.....+...+.-.-..+|+|+..
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g-------~~v~~~~~~~~~l~~~l~~aDvVI~a  237 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFG-------GRIHTRYSNAYEIEDAVKRADLLIGA  237 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcC-------ceeEeccCCHHHHHHHHccCCEEEEc
Confidence            456799999984 55555555442 3489999999877665544221       11111111111111001357999875


Q ss_pred             chhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      -.+.-...|.-+-+++.+.+|+|++++-...
T Consensus       238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva~  268 (370)
T TIGR00518       238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVAI  268 (370)
T ss_pred             cccCCCCCCcCcCHHHHhcCCCCCEEEEEec
Confidence            3221111232233666777899988775443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]

Probab=82.92  E-value=0.9  Score=34.74  Aligned_cols=48  Identities=15%  Similarity=0.201  Sum_probs=27.3

Q ss_pred             cccCcCCcCCeeeccCCCccc-cccCCCCccccccccCceeeCCCCccc
Q 021975           50 RNQTLELEGDLFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        50 ~~~~~~~~~~~l~CP~C~~~l-~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      +++..........||.||..- .....+.-..++-+...++|..||+.|
T Consensus        62 ~~~~~~~~~~~~~CpkCg~~ea~y~~~QtRsaDEp~T~Fy~C~~Cg~~w  110 (113)
T COG1594          62 TQGAKTLPTAKEKCPKCGNKEAYYWQLQTRSADEPETRFYKCTRCGYRW  110 (113)
T ss_pred             ccCccccccccccCCCCCCceeEEEeeehhccCCCceEEEEecccCCEe
Confidence            344444444467899999941 111111112233344679999999986

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=82.79  E-value=21  Score=32.84  Aligned_cols=103  Identities=18%  Similarity=0.196  Sum_probs=65.0

Q ss_pred             hhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc----CCC--CCC
Q 021975          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD----VCR--LPF  233 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d----~~~--lp~  233 (304)
                      ..+..++.+|.-+|||. |.....-++......++++|+++.-++.|++.-.         .+++...    +.+  ...
T Consensus       180 ta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA---------T~~vn~~~~~~vv~~i~~~  250 (366)
T COG1062         180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA---------THFVNPKEVDDVVEAIVEL  250 (366)
T ss_pred             cccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC---------ceeecchhhhhHHHHHHHh
Confidence            34556788999999986 6555555554335699999999999999988322         2233221    100  011


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      -++..|.++     +..-+.. .++.....+.++|..++.-....
T Consensus       251 T~gG~d~~~-----e~~G~~~-~~~~al~~~~~~G~~v~iGv~~~  289 (366)
T COG1062         251 TDGGADYAF-----ECVGNVE-VMRQALEATHRGGTSVIIGVAGA  289 (366)
T ss_pred             cCCCCCEEE-----EccCCHH-HHHHHHHHHhcCCeEEEEecCCC
Confidence            233455553     3333444 67888888888999888776553

>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]

Probab=82.79  E-value=0.76  Score=38.05  Aligned_cols=26  Identities=38%  Similarity=0.898  Sum_probs=22.1

Q ss_pred             eeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      -.|+.|+.+|....           ..+.|++||+.-
T Consensus       150 A~CsrC~~~L~~~~-----------~~l~Cp~Cg~tE  175 (188)
T COG1096         150 ARCSRCRAPLVKKG-----------NMLKCPNCGNTE  175 (188)
T ss_pred             EEccCCCcceEEcC-----------cEEECCCCCCEE
Confidence            57999999998854           689999999864

>PRK08339 short chain dehydrogenase; Provisional

Probab=82.70  E-value=28  Score=30.26  Aligned_cols=77  Identities=21%  Similarity=0.340  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----C----
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F----  233 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~----  233 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.++.++..++...+.+....   ..++.++.+|+.+..     +    
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~   81 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES---NVDVSYIVADLTKREDLERTVKELK   81 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc---CCceEEEEecCCCHHHHHHHHHHHH
Confidence            35688888876652   4556666666  89999998877766665554321   246888899987642     1    


Q ss_pred             CCCccceEEecchh
Q 021975          234 ASGFVDAVHAGAAL  247 (304)
Q Consensus       234 ~~~~fD~V~~~~vl  247 (304)
                      .-+.+|+++.+...
T Consensus        82 ~~g~iD~lv~nag~   95 (263)
T PRK08339         82 NIGEPDIFFFSTGG   95 (263)
T ss_pred             hhCCCcEEEECCCC
Confidence            11468888876543

>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7

Probab=82.66  E-value=1.5  Score=28.97  Aligned_cols=33  Identities=18%  Similarity=0.381  Sum_probs=25.3

Q ss_pred             CCcCCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      .....++.|-.|++.+....-          ..++|..||+..
T Consensus        15 r~~~miYiCgdC~~en~lk~~----------D~irCReCG~RI   47 (62)
T KOG3507|consen   15 RTATMIYICGDCGQENTLKRG----------DVIRCRECGYRI   47 (62)
T ss_pred             CcccEEEEeccccccccccCC----------CcEehhhcchHH
Confidence            335567999999998866442          589999999864

0 [Transcription]

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=82.47  E-value=1.1  Score=29.67  Aligned_cols=36  Identities=25%  Similarity=0.485  Sum_probs=19.7

Q ss_pred             cCCeeeccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (304)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (304)
                      ....|.||.||......-..    -.-....++|++||..
T Consensus        24 ~~v~F~CPnCGe~~I~Rc~~----CRk~g~~Y~Cp~CGF~   59 (61)
T COG2888          24 TAVKFPCPNCGEVEIYRCAK----CRKLGNPYRCPKCGFE   59 (61)
T ss_pred             ceeEeeCCCCCceeeehhhh----HHHcCCceECCCcCcc
Confidence            34568899999654321100    0001157888888753

>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins

Probab=82.47  E-value=0.85  Score=31.30  Aligned_cols=30  Identities=20%  Similarity=0.470  Sum_probs=21.5

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ..-.||.||........         ...+.|+.||...
T Consensus        27 TSq~C~~CG~~~~~~~~---------~r~~~C~~Cg~~~   56 (69)
T PF07282_consen   27 TSQTCPRCGHRNKKRRS---------GRVFTCPNCGFEM   56 (69)
T ss_pred             CccCccCcccccccccc---------cceEEcCCCCCEE
Confidence            34569999998755111         1689999999764

More information about these proteins can be found at Protein of the Month: Transposase [].

>PRK06181 short chain dehydrogenase; Provisional

Probab=82.40  E-value=15  Score=31.81  Aligned_cols=73  Identities=16%  Similarity=0.221  Sum_probs=45.3

Q ss_pred             CeEEEEcCCccHHHH----HHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC----
Q 021975          168 GLLVDVSCGSGLFSR----KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA----  234 (304)
Q Consensus       168 ~~vLDiGcG~G~~~~----~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----  234 (304)
                      .++|-.|+.. ..+.    .+.+.+.  +|++++.++...+...+.++..+    .++.++.+|+.+..     +.    
T Consensus         2 ~~vlVtGasg-~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~   74 (263)
T PRK06181          2 KVVIITGASE-GIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG----GEALVVPTDVSDAEACERLIEAAVA   74 (263)
T ss_pred             CEEEEecCCc-HHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4677777543 3333    3444555  99999998876665555444433    46888889987642     00    


Q ss_pred             -CCccceEEecchh
Q 021975          235 -SGFVDAVHAGAAL  247 (304)
Q Consensus       235 -~~~fD~V~~~~vl  247 (304)
                       -+..|+|+.....
T Consensus        75 ~~~~id~vi~~ag~   88 (263)
T PRK06181         75 RFGGIDILVNNAGI   88 (263)
T ss_pred             HcCCCCEEEECCCc
Confidence             1357988876543

>PRK07576 short chain dehydrogenase; Provisional

Probab=82.38  E-value=17  Score=31.68  Aligned_cols=74  Identities=30%  Similarity=0.362  Sum_probs=45.8

Q ss_pred             CCCeEEEEcCCcc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975          166 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (304)
                      +++++|-.|.+.|  . ....+++.+.  +|++++.+++.++...+.+...+    .++.++..|+.+..     +.   
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~i~~~~~~~~   81 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG----PEGLGVSADVRDYAAVEAAFAQIA   81 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC----CceEEEECCCCCHHHHHHHHHHHH
Confidence            4678888886433  2 3344555555  89999998876665544444322    45678888886532     10   


Q ss_pred             --CCccceEEecc
Q 021975          235 --SGFVDAVHAGA  245 (304)
Q Consensus       235 --~~~fD~V~~~~  245 (304)
                        .+.+|+++...
T Consensus        82 ~~~~~iD~vi~~a   94 (264)
T PRK07576         82 DEFGPIDVLVSGA   94 (264)
T ss_pred             HHcCCCCEEEECC
Confidence              13579988654

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=82.32  E-value=25  Score=31.42  Aligned_cols=96  Identities=14%  Similarity=0.075  Sum_probs=59.8

Q ss_pred             hcccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-----CCC
Q 021975          162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFA  234 (304)
Q Consensus       162 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~  234 (304)
                      ....++.+||=.|.  |.|..+..+++.. +.++++++-+++..+.+++ +   +    .. .++...-.+.     ...
T Consensus       139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~-~---G----a~-~vi~~~~~~~~~~v~~~~  208 (329)
T cd08294         139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE-L---G----FD-AVFNYKTVSLEEALKEAA  208 (329)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-c---C----CC-EEEeCCCccHHHHHHHHC
Confidence            33456788888874  4577777777764 3489999988888777766 1   1    11 1221111111     011


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ...+|+|+..-     .  ...+.+..+.|+++|+++...
T Consensus       209 ~~gvd~vld~~-----g--~~~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         209 PDGIDCYFDNV-----G--GEFSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             CCCcEEEEECC-----C--HHHHHHHHHhhccCCEEEEEc
Confidence            24588887532     1  245788999999999988654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=82.23  E-value=3.3  Score=36.47  Aligned_cols=76  Identities=16%  Similarity=0.196  Sum_probs=43.3

Q ss_pred             HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHH
Q 021975          180 FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAE  259 (304)
Q Consensus       180 ~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~  259 (304)
                      +...|.+.++..+|+|+|.++..++.|.+.    |    ..-.. ..+.+.  +  ..+|+|+..--+..   ...++++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g----~~~~~-~~~~~~--~--~~~DlvvlavP~~~---~~~~l~~   64 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALEL----G----IIDEA-STDIEA--V--EDADLVVLAVPVSA---IEDVLEE   64 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT----T----SSSEE-ESHHHH--G--GCCSEEEE-S-HHH---HHHHHHH
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC----C----Ceeec-cCCHhH--h--cCCCEEEEcCCHHH---HHHHHHH
Confidence            356788888778999999999998888762    1    11111 111111  1  24698887543332   2355666


Q ss_pred             HHHhcccCcEEE
Q 021975          260 ISRILRSGGVFV  271 (304)
Q Consensus       260 ~~r~LkpgG~lv  271 (304)
                      +...+++|++++
T Consensus        65 ~~~~~~~~~iv~   76 (258)
T PF02153_consen   65 IAPYLKPGAIVT   76 (258)
T ss_dssp             HHCGS-TTSEEE
T ss_pred             hhhhcCCCcEEE
Confidence            666666665444

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>TIGR01384 TFS_arch transcription factor S, archaeal

Probab=82.15  E-value=0.92  Score=33.98  Aligned_cols=27  Identities=22%  Similarity=0.535  Sum_probs=21.2

Q ss_pred             eccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 021975           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (304)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~   99 (304)
                      -||.||..|....           +.+.|+.|+..+..
T Consensus         2 fC~~Cg~~l~~~~-----------~~~~C~~C~~~~~~   28 (104)
T TIGR01384         2 FCPKCGSLMTPKN-----------GVYVCPSCGYEKEK   28 (104)
T ss_pred             CCcccCcccccCC-----------CeEECcCCCCcccc
Confidence            5999999995432           58999999987654

There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=82.12  E-value=0.98  Score=28.87  Aligned_cols=32  Identities=16%  Similarity=0.395  Sum_probs=23.1

Q ss_pred             cCCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      .+..+.|-.|+..+.....         ...++|+.||+.-
T Consensus         3 ~~~~Y~C~~Cg~~~~~~~~---------~~~irCp~Cg~rI   34 (49)
T COG1996           3 AMMEYKCARCGREVELDQE---------TRGIRCPYCGSRI   34 (49)
T ss_pred             ceEEEEhhhcCCeeehhhc---------cCceeCCCCCcEE
Confidence            3456899999998843221         1578999999865

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=81.98  E-value=13  Score=33.92  Aligned_cols=99  Identities=21%  Similarity=0.291  Sum_probs=58.2

Q ss_pred             cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC--CCCC------C
Q 021975          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRLP------F  233 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~lp------~  233 (304)
                      ...++.+||-+|+|. |..+..+++.. +.+++++|.+++.++.+++.    +    ....+...+.  .++.      -
T Consensus       163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~----G----a~~~i~~~~~~~~~~~~~~~~~t  233 (349)
T TIGR03201       163 GLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGF----G----ADLTLNPKDKSAREVKKLIKAFA  233 (349)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh----C----CceEecCccccHHHHHHHHHhhc
Confidence            345678999999965 66666677664 34899999999988887652    1    1111110010  0000      0


Q ss_pred             CCCccc----eEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          234 ASGFVD----AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       234 ~~~~fD----~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ....+|    +|+     +....+ ..+....+.|++||++++....
T Consensus       234 ~~~g~d~~~d~v~-----d~~g~~-~~~~~~~~~l~~~G~iv~~G~~  274 (349)
T TIGR03201       234 KARGLRSTGWKIF-----ECSGSK-PGQESALSLLSHGGTLVVVGYT  274 (349)
T ss_pred             ccCCCCCCcCEEE-----ECCCCh-HHHHHHHHHHhcCCeEEEECcC
Confidence            112344    343     333332 3577788899999999877643

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK08265 short chain dehydrogenase; Provisional

Probab=81.92  E-value=17  Score=31.63  Aligned_cols=72  Identities=15%  Similarity=0.172  Sum_probs=45.1

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.+|.++...+...+.+       ..++.++.+|+.+..     +.   
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~~   75 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASL-------GERARFIATDITDDAAIERAVATVV   75 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCeeEEEEecCCCHHHHHHHHHHHH
Confidence            35688888865542   3445555665  9999998876544443321       246788899987642     11   


Q ss_pred             --CCccceEEecch
Q 021975          235 --SGFVDAVHAGAA  246 (304)
Q Consensus       235 --~~~fD~V~~~~v  246 (304)
                        -+..|+++.+..
T Consensus        76 ~~~g~id~lv~~ag   89 (261)
T PRK08265         76 ARFGRVDILVNLAC   89 (261)
T ss_pred             HHhCCCCEEEECCC
Confidence              135798887654

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=81.90  E-value=24  Score=31.47  Aligned_cols=93  Identities=16%  Similarity=0.127  Sum_probs=56.5

Q ss_pred             cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceE
Q 021975          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (304)
                      ...++.+||=.|+|. |..+..+++.. +.++++++.+++..+.+++ +   +   ...+.    +.... .....+|+|
T Consensus       152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~-~---g---~~~~~----~~~~~-~~~~~~d~v  218 (319)
T cd08242         152 PITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR-L---G---VETVL----PDEAE-SEGGGFDVV  218 (319)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-c---C---CcEEe----Ccccc-ccCCCCCEE
Confidence            345677888887642 44444445442 3479999999988888776 2   1   11111    11111 234568988


Q ss_pred             EecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +...     .. ...++.+.+.|+++|.++...
T Consensus       219 id~~-----g~-~~~~~~~~~~l~~~g~~v~~~  245 (319)
T cd08242         219 VEAT-----GS-PSGLELALRLVRPRGTVVLKS  245 (319)
T ss_pred             EECC-----CC-hHHHHHHHHHhhcCCEEEEEc
Confidence            8742     11 345788888999999998743

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=81.78  E-value=1.1  Score=28.24  Aligned_cols=27  Identities=33%  Similarity=0.801  Sum_probs=18.2

Q ss_pred             eeccCCCccccccCCCCccccccccCceeeCCCCc
Q 021975           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK   95 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~   95 (304)
                      ++||.|++.-......        ...++|..|++
T Consensus        19 ~~CP~Cg~~~~~~~~~--------~~~~~C~~C~~   45 (46)
T PF12760_consen   19 FVCPHCGSTKHYRLKT--------RGRYRCKACRK   45 (46)
T ss_pred             CCCCCCCCeeeEEeCC--------CCeEECCCCCC
Confidence            7799999963221110        26899999986

It may be a zinc-binding beta ribbon domain that could bind DNA.

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=81.72  E-value=18  Score=31.19  Aligned_cols=75  Identities=17%  Similarity=0.157  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCccHHHHH----HHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-C----C--
Q 021975          166 QGGLLVDVSCGSGLFSRK----FAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F----A--  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~----l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~----~--  234 (304)
                      +++++|=.|+ +|..+..    |.+.+.  +|+.++-+...++...+.+...+    .++.++.+|+.+.. +    .  
T Consensus        11 ~~k~ilItGa-~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~----~~~~~~~~Dl~d~~~i~~~~~~~   83 (259)
T PRK08213         11 SGKTALVTGG-SRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG----IDALWIAADVADEADIERLAEET   83 (259)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC----CeEEEEEccCCCHHHHHHHHHHH
Confidence            4678898885 4444444    444455  89999998877666665554432    56788999997632 1    0  


Q ss_pred             ---CCccceEEecchh
Q 021975          235 ---SGFVDAVHAGAAL  247 (304)
Q Consensus       235 ---~~~fD~V~~~~vl  247 (304)
                         .+.+|+|+.....
T Consensus        84 ~~~~~~id~vi~~ag~   99 (259)
T PRK08213         84 LERFGHVDILVNNAGA   99 (259)
T ss_pred             HHHhCCCCEEEECCCC
Confidence               1367988876543

>PRK09072 short chain dehydrogenase; Provisional

Probab=81.59  E-value=15  Score=31.78  Aligned_cols=75  Identities=12%  Similarity=0.137  Sum_probs=49.7

Q ss_pred             CCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC---------C
Q 021975          167 GGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------A  234 (304)
Q Consensus       167 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---------~  234 (304)
                      +.++|=.|++.|-   +...+++.|.  +|++++.++..++.....+. .    ..++.++.+|+.+..-         .
T Consensus         5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-~----~~~~~~~~~D~~d~~~~~~~~~~~~~   77 (263)
T PRK09072          5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLP-Y----PGRHRWVVADLTSEAGREAVLARARE   77 (263)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHh-c----CCceEEEEccCCCHHHHHHHHHHHHh
Confidence            5678888876542   4455666666  99999998877766655442 1    2578889999876420         0


Q ss_pred             CCccceEEecchhc
Q 021975          235 SGFVDAVHAGAALH  248 (304)
Q Consensus       235 ~~~fD~V~~~~vl~  248 (304)
                      .+..|+|+......
T Consensus        78 ~~~id~lv~~ag~~   91 (263)
T PRK09072         78 MGGINVLINNAGVN   91 (263)
T ss_pred             cCCCCEEEECCCCC
Confidence            14579888876543

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=81.37  E-value=31  Score=30.89  Aligned_cols=92  Identities=20%  Similarity=0.131  Sum_probs=55.3

Q ss_pred             cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceE
Q 021975          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (304)
                      ...++.+||=.|+|. |..+..+++.. +.+++.++.++...+.+++ +   +      +..+. +....  ....+|++
T Consensus       164 ~~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~-~---g------~~~~~-~~~~~--~~~~vD~v  229 (329)
T cd08298         164 GLKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELARE-L---G------ADWAG-DSDDL--PPEPLDAA  229 (329)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHH-h---C------CcEEe-ccCcc--CCCcccEE
Confidence            344567777787653 44444455543 3599999988877766644 1   1      11111 11111  23468887


Q ss_pred             EecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +...     .. ...++++.+.|+++|.++...
T Consensus       230 i~~~-----~~-~~~~~~~~~~l~~~G~~v~~g  256 (329)
T cd08298         230 IIFA-----PV-GALVPAALRAVKKGGRVVLAG  256 (329)
T ss_pred             EEcC-----Cc-HHHHHHHHHHhhcCCEEEEEc
Confidence            7531     11 246889999999999999765

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=81.25  E-value=0.64  Score=37.84  Aligned_cols=32  Identities=19%  Similarity=0.464  Sum_probs=23.6

Q ss_pred             cCCeeeccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (304)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (304)
                      .-..+.||.|+.......        .+...+.|+.||..
T Consensus       106 ~~~~Y~Cp~c~~r~tf~e--------A~~~~F~Cp~Cg~~  137 (158)
T TIGR00373       106 NNMFFICPNMCVRFTFNE--------AMELNFTCPRCGAM  137 (158)
T ss_pred             CCCeEECCCCCcEeeHHH--------HHHcCCcCCCCCCE
Confidence            345689999998775533        23358999999975

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PRK08267 short chain dehydrogenase; Provisional

Probab=81.23  E-value=16  Score=31.56  Aligned_cols=72  Identities=24%  Similarity=0.173  Sum_probs=47.0

Q ss_pred             CeEEEEcCCcc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC-----
Q 021975          168 GLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-----  234 (304)
Q Consensus       168 ~~vLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-----  234 (304)
                      +++|-.|++.|  . +...+++.|.  +|+.++.++..++...+...      ..++.++.+|+.+..     +.     
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~~   73 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELG------AGNAWTGALDVTDRAAWDAALADFAAA   73 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            36788887654  2 3455556665  99999998877666544332      246889999997632     11     


Q ss_pred             -CCccceEEecchh
Q 021975          235 -SGFVDAVHAGAAL  247 (304)
Q Consensus       235 -~~~fD~V~~~~vl  247 (304)
                       .+.+|+|+.....
T Consensus        74 ~~~~id~vi~~ag~   87 (260)
T PRK08267         74 TGGRLDVLFNNAGI   87 (260)
T ss_pred             cCCCCCEEEECCCC
Confidence             3467998886654

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=81.09  E-value=18  Score=32.61  Aligned_cols=96  Identities=15%  Similarity=0.184  Sum_probs=57.2

Q ss_pred             ccCCCeEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC------CCCCC
Q 021975          164 SAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASG  236 (304)
Q Consensus       164 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~~  236 (304)
                      ..++.+||..|+| .|..+..+++......+++++.++...+.+++.    +     ...++...-..+      -...+
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g-----~~~vi~~~~~~~~~~i~~~~~~~  235 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----G-----ATDIINPKNGDIVEQILELTGGR  235 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----C-----CcEEEcCCcchHHHHHHHHcCCC
Confidence            3457788887765 366666677664223788998888777666542    1     011221111110      01235


Q ss_pred             ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      .+|+|+....      ....+.+..+.|+++|+++...
T Consensus       236 ~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         236 GVDCVIEAVG------FEETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             CCcEEEEccC------CHHHHHHHHHHhhcCCEEEEEc
Confidence            6898886421      1246888899999999988654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=81.08  E-value=12  Score=37.33  Aligned_cols=90  Identities=11%  Similarity=0.112  Sum_probs=57.7

Q ss_pred             eEEEEcCCccHHHHHHH----HhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----CCCCccce
Q 021975          169 LLVDVSCGSGLFSRKFA----KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA  240 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~----~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~  240 (304)
                      .|+=+|+|  .++..++    +.+.  .++.+|.+++.++.+++          .+...+.+|..+..    ..-+..|+
T Consensus       402 ~vII~G~G--r~G~~va~~L~~~g~--~vvvID~d~~~v~~~~~----------~g~~v~~GDat~~~~L~~agi~~A~~  467 (601)
T PRK03659        402 QVIIVGFG--RFGQVIGRLLMANKM--RITVLERDISAVNLMRK----------YGYKVYYGDATQLELLRAAGAEKAEA  467 (601)
T ss_pred             CEEEecCc--hHHHHHHHHHHhCCC--CEEEEECCHHHHHHHHh----------CCCeEEEeeCCCHHHHHhcCCccCCE
Confidence            45555554  4544444    3344  99999999999998876          45778999997742    12235677


Q ss_pred             EEecchhccCCCHHH--HHHHHHHhcccCcEEEEEEeCC
Q 021975          241 VHAGAALHCWPSPSN--AVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       241 V~~~~vl~h~~d~~~--~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++..     +|+..  .+-...|.+.|...++.....+
T Consensus       468 vv~~~-----~d~~~n~~i~~~~r~~~p~~~IiaRa~~~  501 (601)
T PRK03659        468 IVITC-----NEPEDTMKIVELCQQHFPHLHILARARGR  501 (601)
T ss_pred             EEEEe-----CCHHHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence            66643     34432  3444566677888887766544

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=81.07  E-value=6.5  Score=36.76  Aligned_cols=54  Identities=7%  Similarity=0.012  Sum_probs=38.7

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK  211 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~  211 (304)
                      +...+.+...++.+||-|..|....+.. ...+| .+|++||+|+......+=+..
T Consensus        25 ~vD~~aL~i~~~d~vl~ItSaG~N~L~y-L~~~P-~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   25 RVDMEALNIGPDDRVLTITSAGCNALDY-LLAGP-KRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             HHHHHHhCCCCCCeEEEEccCCchHHHH-HhcCC-ceEEEEeCCHHHHHHHHHHHH
Confidence            4455667778899999997665555555 44444 599999999998777765543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK08324 short chain dehydrogenase; Validated

Probab=80.90  E-value=19  Score=36.52  Aligned_cols=103  Identities=22%  Similarity=0.225  Sum_probs=62.9

Q ss_pred             CCCeEEEEcCCcc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975          166 QGGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (304)
                      .+++||-.|++.|  . ....+.+.|.  +|+.+|.++..++.+.+.+...     .++.++.+|+.+..     +.   
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~-----~~v~~v~~Dvtd~~~v~~~~~~~~  493 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP-----DRALGVACDVTDEAAVQAAFEEAA  493 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc-----CcEEEEEecCCCHHHHHHHHHHHH
Confidence            4578898886443  2 3444555565  8999999987766655543221     36788888986632     11   


Q ss_pred             --CCccceEEecchhccCCC-------------------HHHHHHHHHHhccc---CcEEEEEEe
Q 021975          235 --SGFVDAVHAGAALHCWPS-------------------PSNAVAEISRILRS---GGVFVGTTF  275 (304)
Q Consensus       235 --~~~fD~V~~~~vl~h~~d-------------------~~~~l~~~~r~Lkp---gG~lvi~~~  275 (304)
                        -+.+|+|+....+-....                   ...+++.+.+.++.   ||.+++...
T Consensus       494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS  558 (681)
T PRK08324        494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS  558 (681)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence              136899888665322110                   22346666777766   677776553

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=80.84  E-value=6.3  Score=30.15  Aligned_cols=90  Identities=20%  Similarity=0.273  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCCccH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC-CCccceEEe
Q 021975          166 QGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHA  243 (304)
Q Consensus       166 ~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~  243 (304)
                      ..++|+|+|-|.=. .+..|+++|.  .++++|+++.   .           ....+.++..|+.+.... =...|+|.+
T Consensus        13 ~~gkVvEVGiG~~~~VA~~L~e~g~--dv~atDI~~~---~-----------a~~g~~~v~DDitnP~~~iY~~A~lIYS   76 (129)
T COG1255          13 ARGKVVEVGIGFFLDVAKRLAERGF--DVLATDINEK---T-----------APEGLRFVVDDITNPNISIYEGADLIYS   76 (129)
T ss_pred             cCCcEEEEccchHHHHHHHHHHcCC--cEEEEecccc---c-----------CcccceEEEccCCCccHHHhhCccceee
Confidence            34599999988754 4667777776  9999999886   1           125688999999874311 123566666


Q ss_pred             cchhccCCCHHHHHHHHHHhccc-CcEEEEEEeCC
Q 021975          244 GAALHCWPSPSNAVAEISRILRS-GGVFVGTTFLR  277 (304)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~Lkp-gG~lvi~~~~~  277 (304)
                      .   .   -|.++.+.+.++-+. |..+++.....
T Consensus        77 i---R---pppEl~~~ildva~aVga~l~I~pL~G  105 (129)
T COG1255          77 I---R---PPPELQSAILDVAKAVGAPLYIKPLTG  105 (129)
T ss_pred             c---C---CCHHHHHHHHHHHHhhCCCEEEEecCC
Confidence            3   2   344444444444433 34566666554

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=80.83  E-value=22  Score=30.59  Aligned_cols=75  Identities=23%  Similarity=0.262  Sum_probs=48.3

Q ss_pred             CCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC----
Q 021975          167 GGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA----  234 (304)
Q Consensus       167 ~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----  234 (304)
                      ++++|=.|+..|   .....|++.+.  +|+.++.++...+...+.+...+    .++.++.+|+.+..     +.    
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~   80 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG----GKAIGVAMDVTNEDAVNAGIDKVAE   80 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC----ceEEEEECCCCCHHHHHHHHHHHHH
Confidence            567887776433   23445555665  89999999877666666554433    46788899987642     00    


Q ss_pred             -CCccceEEecchh
Q 021975          235 -SGFVDAVHAGAAL  247 (304)
Q Consensus       235 -~~~fD~V~~~~vl  247 (304)
                       .+..|+|+.....
T Consensus        81 ~~~~~d~vi~~ag~   94 (262)
T PRK13394         81 RFGSVDILVSNAGI   94 (262)
T ss_pred             HcCCCCEEEECCcc
Confidence             1357988876554

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=80.67  E-value=0.74  Score=38.23  Aligned_cols=31  Identities=26%  Similarity=0.662  Sum_probs=23.4

Q ss_pred             CCeeeccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (304)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (304)
                      -..+.||.|+.......        .+...+.|+.||..
T Consensus       115 ~~~Y~Cp~C~~rytf~e--------A~~~~F~Cp~Cg~~  145 (178)
T PRK06266        115 NMFFFCPNCHIRFTFDE--------AMEYGFRCPQCGEM  145 (178)
T ss_pred             CCEEECCCCCcEEeHHH--------HhhcCCcCCCCCCC
Confidence            35799999998776643        23468999999875

>PRK07774 short chain dehydrogenase; Provisional

Probab=80.54  E-value=27  Score=29.76  Aligned_cols=74  Identities=22%  Similarity=0.238  Sum_probs=45.9

Q ss_pred             CCeEEEEcCCccHHH----HHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC---------
Q 021975          167 GGLLVDVSCGSGLFS----RKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~----~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---------  233 (304)
                      ++++|=.|+ +|..+    ..+.+.+.  +|++++-++...+...+.+...+    .++.++..|+.+..-         
T Consensus         6 ~k~vlItGa-sg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~   78 (250)
T PRK07774          6 DKVAIVTGA-AGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG----GTAIAVQVDVSDPDSAKAMADATV   78 (250)
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHHHHHHHH
Confidence            567888885 34444    44445555  99999988766555544443322    457788889876430         


Q ss_pred             -CCCccceEEecchh
Q 021975          234 -ASGFVDAVHAGAAL  247 (304)
Q Consensus       234 -~~~~fD~V~~~~vl  247 (304)
                       .-+.+|+|+.....
T Consensus        79 ~~~~~id~vi~~ag~   93 (250)
T PRK07774         79 SAFGGIDYLVNNAAI   93 (250)
T ss_pred             HHhCCCCEEEECCCC
Confidence             01358999986653

>KOG2691 consensus RNA polymerase II subunit 9 [Transcription]

Probab=80.47  E-value=1.3  Score=33.00  Aligned_cols=39  Identities=15%  Similarity=0.242  Sum_probs=24.2

Q ss_pred             CeeeccCCCccccc-cCCCCccccccccCceeeCCCCccc
Q 021975           59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        59 ~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ..-.||.|+..-.. -..+.......+.-.+.|.+|+|.+
T Consensus        72 s~~~C~~C~~~eavffQ~~~~r~d~~m~l~yvC~~C~h~w  111 (113)
T KOG2691|consen   72 SDKHCPKCGHREAVFFQAQTRRADEAMRLFYVCCSCGHRW  111 (113)
T ss_pred             ccccCCccCCcceEEEecccccccceEEEEEEeccccccc
Confidence            56789999984211 1112223344445678899999976

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=80.47  E-value=28  Score=32.02  Aligned_cols=99  Identities=17%  Similarity=0.185  Sum_probs=58.9

Q ss_pred             cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC--CC-----CCC
Q 021975          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RL-----PFA  234 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~--~l-----p~~  234 (304)
                      ...++.+||=+|+|. |..+..+++......++++|.+++..+.+++.    +    .. .++...-.  +.     ...
T Consensus       183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----G----a~-~~i~~~~~~~~~~~~v~~~~  253 (368)
T cd08300         183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----G----AT-DCVNPKDHDKPIQQVLVEMT  253 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C----CC-EEEcccccchHHHHHHHHHh
Confidence            345678888888763 55666666664223699999999988877651    1    11 11211100  00     011


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEeC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFL  276 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~~  276 (304)
                      .+.+|+|+-.-     .. ...+.+..+.|+++ |+++.....
T Consensus       254 ~~g~d~vid~~-----g~-~~~~~~a~~~l~~~~G~~v~~g~~  290 (368)
T cd08300         254 DGGVDYTFECI-----GN-VKVMRAALEACHKGWGTSVIIGVA  290 (368)
T ss_pred             CCCCcEEEECC-----CC-hHHHHHHHHhhccCCCeEEEEccC
Confidence            23588887632     22 24677888899987 988876543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=80.35  E-value=30  Score=31.79  Aligned_cols=98  Identities=19%  Similarity=0.247  Sum_probs=57.6

Q ss_pred             cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC--CC----C-CCC
Q 021975          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CR----L-PFA  234 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~----l-p~~  234 (304)
                      ...++.+||=+|+|. |..+..+++.....+|+++|.++...+.+++.    +    .. .++...-  ..    + ...
T Consensus       181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----g----a~-~~i~~~~~~~~~~~~~~~~~  251 (365)
T cd08277         181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----G----AT-DFINPKDSDKPVSEVIREMT  251 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C----CC-cEeccccccchHHHHHHHHh
Confidence            345678888888763 55556666664223799999999888877551    1    11 1111110  00    0 011


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEe
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~  275 (304)
                      .+.+|+|+-.-     .. ...+.+..+.|+++ |.+++...
T Consensus       252 ~~g~d~vid~~-----g~-~~~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         252 GGGVDYSFECT-----GN-ADLMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             CCCCCEEEECC-----CC-hHHHHHHHHhcccCCCEEEEEcC
Confidence            24588887532     22 24577888899886 99887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK10458 DNA cytosine methylase; Provisional

Probab=80.19  E-value=13  Score=35.81  Aligned_cols=72  Identities=17%  Similarity=0.204  Sum_probs=48.4

Q ss_pred             HHHHHHHhhcccC------CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975          154 EFKMAQEYFKSAQ------GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (304)
Q Consensus       154 ~~~~l~~~l~~~~------~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (304)
                      ....+...+...+      ..+++|+=||.|.+..-+...|. ..|.++|+++.+.+.-+.++..     .+....+.+|
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~-----~p~~~~~~~D  142 (467)
T PRK10458         69 EFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYC-----DPATHRFNED  142 (467)
T ss_pred             HHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCC-----CCccceeccC
Confidence            3445555553322      45899999999999999988874 4678999999888777765421     1233445566


Q ss_pred             CCCC
Q 021975          228 VCRL  231 (304)
Q Consensus       228 ~~~l  231 (304)
                      +..+
T Consensus       143 I~~i  146 (467)
T PRK10458        143 IRDI  146 (467)
T ss_pred             hhhC
Confidence            6554

>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase

Probab=80.16  E-value=1.7  Score=26.05  Aligned_cols=30  Identities=20%  Similarity=0.263  Sum_probs=18.9

Q ss_pred             eeccCCCccccccCCCCccccccccCceeeCCCCc
Q 021975           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK   95 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~   95 (304)
                      ..||.|++.-...- .+    .-..+.+.|.+|+.
T Consensus         4 ~pCP~CGG~DrFr~-~d----~~g~G~~~C~~Cg~   33 (37)
T smart00778        4 GPCPNCGGSDRFRF-DD----KDGRGTWFCSVCGA   33 (37)
T ss_pred             cCCCCCCCcccccc-cc----CCCCcCEEeCCCCC
Confidence            57999999543321 11    11237899999974

This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=80.07  E-value=4  Score=37.10  Aligned_cols=66  Identities=17%  Similarity=0.201  Sum_probs=48.0

Q ss_pred             EEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC-CCccceEEecc
Q 021975          170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA  245 (304)
Q Consensus       170 vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~  245 (304)
                      |+|+-||.|.+..-+...|. ..+.++|+++.+++.-+.++.        + .++.+|+.++... -..+|+++...
T Consensus         1 vidLF~G~GG~~~Gl~~aG~-~~~~a~e~~~~a~~ty~~N~~--------~-~~~~~Di~~~~~~~~~~~dvl~gg~   67 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGF-KCVFASEIDKYAQKTYEANFG--------N-KVPFGDITKISPSDIPDFDILLGGF   67 (315)
T ss_pred             CEEEecCccHHHHHHHHcCC-eEEEEEeCCHHHHHHHHHhCC--------C-CCCccChhhhhhhhCCCcCEEEecC
Confidence            68999999999999998874 356689999999888877642        2 3456777665421 12479888753

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	304
3dlc_A	219	Crystal Structure Of A Putative S-Adenosyl-L-Methio		6e-08
1vl5_A	260	Crystal Structure Of A Putative Methyltransferase (		2e-05
3ccf_A	279	Crystal Structure Of Putative Methyltransferase (Yp		3e-05
3l8d_A	242	Crystal Structure Of Methyltransferase From Bacillu		6e-05

>pdb|3DLC|A Chain A, Crystal Structure Of A Putative S-Adenosyl-L-Methionine-Dependent Methyltransferase (Mmp1179) From Methanococcus Maripaludis At 1.15 A Resolution Length = 219

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227
           G  +D+  G G  S   AK   +S + ALDFS++        I   N  L   + +V+ D
Sbjct: 45  GTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHXNEIALKNIADAN--LNDRIQIVQGD 101
Query: 228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSLTG 286
           V  +P    + D + +  ++  W   + A  EI RIL+SGG  ++G  F       S++ 
Sbjct: 102 VHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISA 161
Query: 287 RVLREDSAELQLFDRRR 303
             +R++  + + F+R+ 
Sbjct: 162 EXIRKN-PDWKEFNRKN 177

>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331) From Bacillus Halodurans C-125 At 1.95 A Resolution Length = 260

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++DV+ G G  +  FA       VVA D +E++L+    FI+ +       +  V+ D  
Sbjct: 41  VLDVATGGGHVANAFAP--FVKKVVAFDLTEDILKVARAFIEGNGH---QQVEYVQGDAE 95
Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
           + PF       V    A H +P+P++ V+E  R+L+ GG
Sbjct: 96  QXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGG 134

>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase (Yp_321342.1) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  ++D+ CG+G  + K A+SG  + V+  D +   + +     +Q+   L  ++A  R 
Sbjct: 58  GEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATXIEKA----RQNYPHLHFDVADARN 111
Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
                P     +DAV + A LH    P  A+A I + L+SGG FV
Sbjct: 112 FRVDKP-----LDAVFSNAXLHWVKEPEAAIASIHQALKSGGRFV 151

>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++DV CG G  + K +++G  +  V +D SE  ++      K        +L+ ++ D+ 
Sbjct: 57  VLDVGCGDGYGTYKLSRTGYKA--VGVDISEVXIQ------KGKERGEGPDLSFIKGDLS 108
Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
            LPF +   +A+ A  +L     P  A+ EI R+L+S G
Sbjct: 109 SLPFENEQFEAIXAINSLEWTEEPLRALNEIKRVLKSDG 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	304
3ege_A	261	Putative methyltransferase from antibiotic biosyn	3e-23
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	4e-22
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	1e-21
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	5e-21
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	1e-20
3i9f_A	170	Putative type 11 methyltransferase; structural gen	4e-19
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	5e-19
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	8e-19
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	9e-19
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	9e-19
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	1e-18
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	2e-18
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	2e-18
1xxl_A	239	YCGJ protein; structural genomics, protein structu	2e-18
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	3e-18
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	5e-18
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	2e-17
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-17
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	3e-17
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	1e-16
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	2e-16
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	2e-16
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	2e-16
3f4k_A	257	Putative methyltransferase; structural genomics, P	2e-16
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	3e-16
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	7e-16
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	4e-15
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	4e-15
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	7e-15
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	7e-15
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	3e-13
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	4e-13
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	4e-13
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	2e-12
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	2e-12
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	3e-12
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	3e-12
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	6e-12
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	7e-12
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	8e-12
3ocj_A	305	Putative exported protein; structural genomics, PS	1e-11
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	2e-11
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	1e-10
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	6e-10
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	8e-10
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	1e-09
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	1e-09
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	2e-09
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	2e-09
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	2e-09
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	4e-09
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	5e-09
3cc8_A	230	Putative methyltransferase; structural genomics, j	1e-08
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	2e-08
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	4e-08
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	5e-08
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	7e-08
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	1e-07
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	2e-07
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	6e-07
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	7e-07
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	2e-06
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	4e-06
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	4e-06
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	7e-06
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	9e-06
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	1e-05
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	4e-05
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	5e-05
2p7i_A	250	Hypothetical protein; putative methyltransferase,	9e-05
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	2e-04

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 95.3 bits (237), Expect = 3e-23
 Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 11/158 (6%)

Query: 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ 205
                               +G ++ D+  G+G +S   A  G +  V A++ S  M +Q
Sbjct: 14  QTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLF--VYAVEPSIVMRQQ 71

Query: 206 CYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILR 265
                          +         L      VD V +  A+H +     +  E+ RI+R
Sbjct: 72  AVVH---------PQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR 122

Query: 266 SGGVFVGTTFLRYTSSTSLTGRVLREDSAELQLFDRRR 303
            G + + T  +R      L           L+      
Sbjct: 123 DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDE 160

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 91.4 bits (227), Expect = 4e-22
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 4/135 (2%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
             G  +D+  G G  S   AK   +S + ALDFS++M       I   N  L   + +V+
Sbjct: 43  TAGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHMNEIALKNIADAN--LNDRIQIVQ 99

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSL 284
            DV  +P    + D + +  ++  W   + A  EI RIL+SGG  ++G  F       S+
Sbjct: 100 GDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSI 159

Query: 285 TGRVLREDSAELQLF 299
           +  ++R++    +  
Sbjct: 160 SAEMIRKNPDWKEFN 174

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 90.8 bits (225), Expect = 1e-21
 Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 8/161 (4%)

Query: 145 RSGFPGPDEEF--KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENM 202
           R+  P    +    MA       +  + +++  G+G  +      G     +ALD    M
Sbjct: 16  RAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYR--YIALDADAAM 73

Query: 203 LRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISR 262
           L       +Q    +   + +V+AD   +P     V  V      H  P     +AE  R
Sbjct: 74  LEVF----RQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIR 129

Query: 263 ILRSGGVFVGTTFLRYTSSTSLTGRVLREDSAELQLFDRRR 303
           +L+ GG  +        S         R  +AE      R 
Sbjct: 130 VLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERG 170

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 88.8 bits (220), Expect = 5e-21
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           DV CG G  + K +++G     V +D SE M+++     K+       +L+ ++ D+  L
Sbjct: 59  DVGCGDGYGTYKLSRTGYK--AVGVDISEVMIQKG----KERG--EGPDLSFIKGDLSSL 110

Query: 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275
           PF +   +A+ A  +L     P  A+ EI R+L+S G       
Sbjct: 111 PFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL 154

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 88.4 bits (219), Expect = 1e-20
 Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 3/105 (2%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  +++  CG G  +   AK+   + + ++D S   L +  +  +++      N+  ++A
Sbjct: 38  GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI---KNVKFLQA 94

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
           ++  LPF     D +     L    SP  A+  + ++L+ GG   
Sbjct: 95  NIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTIT 139

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 81.6 bits (202), Expect = 4e-19
 Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           + G++VD  CG+G + +   +    + +  +D +   L++           +      V 
Sbjct: 17  KKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKE-----------VKEKFDSVI 63

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
                       VD +    + H      + ++E+ RIL+  G  +
Sbjct: 64  TLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVI 109

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 82.6 bits (204), Expect = 5e-19
 Identities = 23/135 (17%), Positives = 51/135 (37%), Gaps = 8/135 (5%)

Query: 145 RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLR 204
           ++    P    +  +   +S     ++D   G  L          Y     ++ S+  L+
Sbjct: 3   KTIIRQPQLY-RFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYK-TYGIEISDLQLK 60

Query: 205 QCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISR 262
           +  +F +++N      L + + D+ +LPF    +  V++   +          A+ EI R
Sbjct: 61  KAENFSRENN----FKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKR 116

Query: 263 ILRSGGVFVGTTFLR 277
           +L+ GG+        
Sbjct: 117 VLKPGGLACINFLTT 131

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 83.4 bits (206), Expect = 8e-19
 Identities = 40/215 (18%), Positives = 77/215 (35%), Gaps = 38/215 (17%)

Query: 61  FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKP 120
           FSCP+C++PL R+            + + C +  +   +K+ Y++L  +   +       
Sbjct: 3   FSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDS 51

Query: 121 ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLF 180
           A     R  F+   + +  R                  +E        +L D+ CG G +
Sbjct: 52  AEMMQARRAFLDAGHYQPLRDAIVA-----------QLRERLDDKATAVL-DIGCGEGYY 99

Query: 181 SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240
           +  FA +        LD S+  ++                +    A   RLPF+   +DA
Sbjct: 100 THAFADALPEITTFGLDVSKVAIKAA--------AKRYPQVTFCVASSHRLPFSDTSMDA 151

Query: 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275
           +          +P     E++R+++ GG  +  T 
Sbjct: 152 I------IRIYAPCK-AEELARVVKPGGWVITATP 179

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 82.7 bits (204), Expect = 9e-19
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 7/109 (6%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
               ++D+ CG G      A+ G    V+ +D SE ML +     K+  T  +  +   +
Sbjct: 44  NQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEA----KRKTT--SPVVCYEQ 96

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274
             +  +       + V +  ALH   S  +   ++   L+S G F+ + 
Sbjct: 97  KAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSV 145

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 81.8 bits (202), Expect = 9e-19
 Identities = 30/137 (21%), Positives = 43/137 (31%), Gaps = 16/137 (11%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  L++V  G+G + R+          V ++ SE ML                    VRA
Sbjct: 37  GESLLEVGAGTGYWLRRLPYPQ----KVGVEPSEAMLAVGRR--------RAPEATWVRA 84

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG 286
               LPF     D V     L         + E  R+LR GG  V         + S   
Sbjct: 85  WGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVL----EALSPWA 140

Query: 287 RVLREDSAELQLFDRRR 303
            + R    +  L   + 
Sbjct: 141 ALYRRLGEKGVLPWAQA 157

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 82.2 bits (203), Expect = 1e-18
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
            G  +VD+ CG G F R   + G  S V+ LD SE ML +     +       + +   R
Sbjct: 43  GGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARA----RAAGP--DTGITYER 95

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275
           AD+ +L       D  ++  ALH     +     + + L  GG FV +T 
Sbjct: 96  ADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE 145

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 81.3 bits (201), Expect = 2e-18
 Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 144 NRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENM 202
           +R     P++  K     F   +G  ++DV  G+G +    +K     G V A+D  E M
Sbjct: 19  SRLELFDPEKVLKE----FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEM 74

Query: 203 LRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISR 262
           +   ++ + +       N+ +++++  ++P     VD +      H    P   + E+ R
Sbjct: 75  VNYAWEKVNKLGL---KNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKR 131

Query: 263 ILRSGGVFV 271
           + +      
Sbjct: 132 VAKPFAYLA 140

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 81.8 bits (202), Expect = 2e-18
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
              ++DV+ G G  +  FA       VVA D +E++L+    FI+ +       +  V+ 
Sbjct: 38  NEEVLDVATGGGHVANAFAPFVKK--VVAFDLTEDILKVARAFIEGNGH---QQVEYVQG 92

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
           D  ++PF       V    A H +P+P++ V+E  R+L+ GG  +
Sbjct: 93  DAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL 137

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 81.4 bits (201), Expect = 2e-18
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 5/105 (4%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
              ++D+  G+G  +  F+        + +D ++ M+     F ++       N+   + 
Sbjct: 22  EHRVLDIGAGAGHTALAFSPYVQE--CIGVDATKEMVEVASSFAQEKGV---ENVRFQQG 76

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
               LPF     D +    A H +     AV E++R+L+  G F+
Sbjct: 77  TAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL 121

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 80.6 bits (199), Expect = 3e-18
 Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 20/137 (14%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
            G  V++  G+G F+            + ++ SE M         +        + +++ 
Sbjct: 48  EGRGVEIGVGTGRFAVPLKI------KIGVEPSERMAEIA-----RKR-----GVFVLKG 91

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG 286
               LP      D       +     P  A+ E  RIL+ GG  +     R     S  G
Sbjct: 92  TAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRE----SFLG 147

Query: 287 RVLREDSAELQLFDRRR 303
           R   ++  +   +   R
Sbjct: 148 REYEKNKEKSVFYKNAR 164

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 80.3 bits (198), Expect = 5e-18
 Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 16/144 (11%)

Query: 138 GWRQNFNRSG--FPGPDEEFKMAQEYFKS------AQGGLLVDVSCGSGLFSRKFAKSGT 189
           G+++ +           +E++   E  +        + G ++D++CG G FS      G 
Sbjct: 2   GFKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG- 60

Query: 190 YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHC 249
           +  VV +D SE+M+R+  ++ K       SN+  +  D  +L F     D V    ++  
Sbjct: 61  FE-VVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115

Query: 250 WPS--PSNAVAEISRILRSGGVFV 271
           +     +    E+ R+L+  G F+
Sbjct: 116 FEPLELNQVFKEVRRVLKPSGKFI 139

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 79.6 bits (196), Expect = 2e-17
 Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 6/128 (4%)

Query: 145 RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENML 203
           R  +   D    +    +K  +   +VD  CG G                  +D  E +L
Sbjct: 1   RDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL 60

Query: 204 RQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRI 263
            +  +  +        +   +  D   +     + D     A L    +P   + ++   
Sbjct: 61  AEARELFRLLP----YDSEFLEGDATEIELNDKY-DIAICHAFLLHMTTPETMLQKMIHS 115

Query: 264 LRSGGVFV 271
           ++ GG  +
Sbjct: 116 VKKGGKII 123

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 79.5 bits (196), Expect = 2e-17
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 6/142 (4%)

Query: 141 QNFNRSGFPGPDEEFKMAQEYFKSAQGGLLV-DVSCGSGLFSRKFAKSGTYSGVVALDFS 199
            N  R G PG  E    A  +  +     L+ D+ CG+G  +   A   T   V  LDF 
Sbjct: 21  SNMERQG-PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQ-VTGLDFL 78

Query: 200 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAE 259
              +       +Q    L + +  +   +  LPF +  +D + +  A++        + E
Sbjct: 79  SGFIDIFNRNARQSG--LQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFE-RGLNE 135

Query: 260 ISRILRSGGVFVGTTFLRYTSS 281
             + L+ GG    +    +T  
Sbjct: 136 WRKYLKKGGYLAVSECSWFTDE 157

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 78.0 bits (192), Expect = 3e-17
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 15/134 (11%)

Query: 143 FNRSGFPGPDEEFKMAQEYFKSAQ---GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS 199
           F +       E F   ++  +       G +++   G+G  + K   +G    V  ++ S
Sbjct: 19  FVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRT--VYGIEPS 76

Query: 200 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAV 257
             M        K+    L    ++   D       +   D + +  A H       + A+
Sbjct: 77  REMRMIA----KEK---LPKEFSITEGDFLSFEVPTSI-DTIVSTYAFHHLTDDEKNVAI 128

Query: 258 AEISRILRSGGVFV 271
           A+ S++L  GG  V
Sbjct: 129 AKYSQLLNKGGKIV 142

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 77.2 bits (190), Expect = 1e-16
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 12/114 (10%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
              ++D+  G+G +S    + G    VV +D S+ ML    +   ++         +V A
Sbjct: 55  PCRVLDLGGGTGKWSLFLQERGFE--VVLVDPSKEMLEVAREKGVKN---------VVEA 103

Query: 227 DVCRLPFASGFVDAVHA-GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT 279
               LPF SG  +AV A G  L    +   A +EI R+L   G+ + T    YT
Sbjct: 104 KAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYT 157

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 75.6 bits (186), Expect = 2e-16
 Identities = 16/139 (11%), Positives = 45/139 (32%), Gaps = 14/139 (10%)

Query: 139 WRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF 198
                         +   +    + +   G+++DV  G+G ++   A  G    +  L+ 
Sbjct: 16  AEALLGTVISAEDPDRVLIEP--WATGVDGVILDVGSGTGRWTGHLASLGHQ--IEGLEP 71

Query: 199 SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNA 256
           +  ++       +Q +     ++      +  L  +      + A  +L         +A
Sbjct: 72  ATRLVELA----RQTHP----SVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDA 123

Query: 257 VAEISRILRSGGVFVGTTF 275
           +  +   +  GG  + + F
Sbjct: 124 LVALRMAVEDGGGLLMSFF 142

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 76.7 bits (189), Expect = 2e-16
 Identities = 36/157 (22%), Positives = 55/157 (35%), Gaps = 19/157 (12%)

Query: 134 LYERGWRQNFNRS--GFPGPDEEFKMAQEYFK---SAQGGL-----LVDVSCGSGLFSRK 183
            + R W +N +       G D     A +       A   +     ++DV CG G  + +
Sbjct: 19  PFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVR 78

Query: 184 FAKSGTYSG--VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241
            A         V  +  S   + Q           L + +    AD   LPF     DAV
Sbjct: 79  LAT---ARDVRVTGISISRPQVNQANARATAAG--LANRVTFSYADAMDLPFEDASFDAV 133

Query: 242 HA-GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277
            A  +  H  P    A+ E++R+LR GG      F+ 
Sbjct: 134 WALESLHH-MPDRGRALREMARVLRPGGTVAIADFVL 169

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 76.0 bits (187), Expect = 2e-16
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 8/106 (7%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           Q   ++D+ CG G   R  A  G     V +D    ++       +          +  +
Sbjct: 52  QPERVLDLGCGEGWLLRALADRG--IEAVGVDGDRTLVDAA----RAAGAGEVHLASYAQ 105

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
               ++P    + D + A  AL         ++ +  +L  GG  V
Sbjct: 106 LAEAKVPVGKDY-DLICANFALL-HQDIIELLSAMRTLLVPGGALV 149

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 76.4 bits (188), Expect = 2e-16
 Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 13/165 (7%)

Query: 119 KPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLV-DVSCGS 177
              S   F   F+   ++   RQ       PG  E  + A  +         + D+ CG+
Sbjct: 4   NNTSIHDFDFSFICNYFKLLKRQG------PGSPEATRKAVSFINELTDDAKIADIGCGT 57

Query: 178 GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236
           G  +   A      G +  +D   + +    +   + N      +  +   +  LPF + 
Sbjct: 58  GGQTLFLAD--YVKGQITGIDLFPDFIEIFNENAVKAN--CADRVKGITGSMDNLPFQNE 113

Query: 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS 281
            +D + +  A++        + E S+ L+ GG    +    +TS 
Sbjct: 114 ELDLIWSEGAIYN-IGFERGMNEWSKYLKKGGFIAVSEASWFTSE 157

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 75.6 bits (186), Expect = 3e-16
 Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 10/147 (6%)

Query: 134 LYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGV 193
           + E  W +  +    P   + + +   Y +  +   ++D+ CGSG  S + A  G    V
Sbjct: 1   MPESYWEK-VSGKNIPSSLDLYPIIHNYLQ--EDDEILDIGCGSGKISLELASKG--YSV 55

Query: 194 VALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP 251
             +D +   +R      +    N            +   L F     D     A L   P
Sbjct: 56  TGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVP 115

Query: 252 SPSN---AVAEISRILRSGGVFVGTTF 275
            P      + E+ R+L+ G       F
Sbjct: 116 DPKERSRIIKEVFRVLKPGAYLYLVEF 142

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 75.5 bits (185), Expect = 7e-16
 Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 10/128 (7%)

Query: 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDF 209
           P + +KM  EY       LLVDV CG G  + + A+       ++  D S  M++     
Sbjct: 22  PSDFYKMIDEYHDGE-RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVI 80

Query: 210 IKQDNTILTSNLALVRADVCRLPFAS------GFVDAVHAGAALHCWPSPSNAVAEISRI 263
            +        N++   +      F          +D + A    H W             
Sbjct: 81  KEGSPDTY-KNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAH-WFDFEKFQRSAYAN 138

Query: 264 LRSGGVFV 271
           LR  G   
Sbjct: 139 LRKDGTIA 146

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 73.3 bits (180), Expect = 4e-15
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           +D+ CG+G  + K A+SG    V+  D +  M+ +     +Q+      +L    AD   
Sbjct: 62  LDLGCGTGQLTEKIAQSGAE--VLGTDNAATMIEKA----RQN----YPHLHFDVADARN 111

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275
                   DAV + A LH    P  A+A I + L+SGG FV    
Sbjct: 112 FRVDKPL-DAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG 155

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 71.4 bits (175), Expect = 4e-15
 Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 13/110 (11%)

Query: 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
            +G  ++D  CG G      +K G +  V+  D    ++       KQD          V
Sbjct: 45  PRGAKILDAGCGQGRIGGYLSKQG-HD-VLGTDLDPILIDYA----KQDF----PEARWV 94

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSN---AVAEISRILRSGGVFV 271
             D+     +    D + +   +  + +      A+A I R L + G  V
Sbjct: 95  VGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAV 144

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 71.7 bits (176), Expect = 7e-15
 Identities = 20/152 (13%), Positives = 49/152 (32%), Gaps = 23/152 (15%)

Query: 132 SFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYS 191
              ++  +  + + +                       ++D+  G+GL S    +    +
Sbjct: 25  IPCFDDFYGVSVSIASVDTE---------------NPDILDLGAGTGLLSAFLMEKYPEA 69

Query: 192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP 251
               +D SE ML    +  + +       +  + AD  +  F   + D V +  ++H   
Sbjct: 70  TFTLVDMSEKMLEIAKNRFRGN-----LKVKYIEADYSKYDFEEKY-DMVVSALSIHHLE 123

Query: 252 SP--SNAVAEISRILRSGGVFVGTTFLRYTSS 281
                        IL+  G+F+    +   ++
Sbjct: 124 DEDKKELYKRSYSILKESGIFINADLVHGETA 155

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 71.1 bits (174), Expect = 7e-15
 Identities = 24/141 (17%), Positives = 43/141 (30%), Gaps = 12/141 (8%)

Query: 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
              G +++++ G+G ++R  +       V ALD S  M+ +              N+   
Sbjct: 45  NIRGDVLELASGTGYWTRHLSGLADR--VTALDGSAEMIAEA-------GRHGLDNVEFR 95

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSST 282
           + D+        + DAV     L   P          +   +  GGV        +    
Sbjct: 96  QQDLFDWTPDRQW-DAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRL 154

Query: 283 SLTGRVLREDSAELQLFDRRR 303
                   E +    L D R 
Sbjct: 155 EQQDDSEPEVAVRRTLQDGRS 175

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 67.2 bits (164), Expect = 3e-13
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
            D+ CG G  +         + +  +D  ++ML +              N    +AD+  
Sbjct: 38  YDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKA----AD----RLPNTNFGKADLAT 89

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275
              A    D ++A A     P     ++++   L SGGV      
Sbjct: 90  WKPAQKA-DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP 133

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 67.6 bits (165), Expect = 4e-13
 Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 24/162 (14%)

Query: 134 LYERGW-RQNFNRSGF--PGPDEEFKMAQEYFKSAQGGLL------------VDVSCGSG 178
            Y   W  ++ +   +  P   +E + A           L            +D+  G G
Sbjct: 35  FYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYG 94

Query: 179 LFSRKFAKSGTYSG--VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236
             +R   +     G  +  L+ +    ++  ++  Q    L  N+ +       +P    
Sbjct: 95  GAARFLVR---KFGVSIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIPCEDN 149

Query: 237 FVDAVHA-GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277
             D + +  A LH  P       E +R+L+  GV   T  ++
Sbjct: 150 SYDFIWSQDAFLHS-PDKLKVFQECARVLKPRGVMAITDPMK 190

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 66.0 bits (161), Expect = 4e-13
 Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 14/131 (10%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  ++++ CG+G  +     +G +  V A D S  +  +    + +              
Sbjct: 44  GAKILELGCGAGYQAEAMLAAG-FD-VDATDGSPELAAEASRRLGRPV---------RTM 92

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSL 284
              +L     + DAV A A L   P    ++ +  I R L+ GG+F  +           
Sbjct: 93  LFHQLDAIDAY-DAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDK 151

Query: 285 TGRVLREDSAE 295
             R     S E
Sbjct: 152 LARYYNYPSEE 162

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 64.7 bits (157), Expect = 2e-12
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 21/121 (17%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
            + CG+   S +    G +  V ++D+S  ++                 L     DV +L
Sbjct: 48  VLGCGNSALSYELFLGG-FPNVTSVDYSSVVVAAMQACYAHVP-----QLRWETMDVRKL 101

Query: 232 PFASGFVDAVHAGAALHC---------------WPSPSNAVAEISRILRSGGVFVGTTFL 276
            F S   D V     L                   +    ++E+SR+L  GG F+  T  
Sbjct: 102 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161

Query: 277 R 277
            
Sbjct: 162 A 162

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 6/137 (4%)

Query: 139 WRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF 198
           W + F++S +    E              G ++ ++ G G  +   A  G Y  V A+D 
Sbjct: 2   WDERFSQSEYVYGTEPNDFLVSVANQIPQGKILCLAEGEGRNACFLASLG-YE-VTAVDQ 59

Query: 199 SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVA 258
           S   L +     ++        +  V++++      +   + + +               
Sbjct: 60  SSVGLAKAKQLAQEKG----VKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYP 115

Query: 259 EISRILRSGGVFVGTTF 275
           ++ + L+ GGVF+   F
Sbjct: 116 KVYQGLKPGGVFILEGF 132

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 15/148 (10%)

Query: 134 LYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG- 192
           +YE  + +N+  SG     E  K      +  +   ++D+  G G       +     G 
Sbjct: 26  VYEFIFGENYISSGGL---EATKKILSDIELNENSKVLDIGSGLGGGCMYINE---KYGA 79

Query: 193 -VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-GAALHC- 249
               +D   N++         +     + +     D+    F     D +++  A L   
Sbjct: 80  HTHGIDICSNIVNMA-----NERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALS 134

Query: 250 WPSPSNAVAEISRILRSGGVFVGTTFLR 277
             + +    +  + L+  G  + T +  
Sbjct: 135 LENKNKLFQKCYKWLKPTGTLLITDYCA 162

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 12/150 (8%)

Query: 151 PDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208
            D  +     +       G  + D+ CG+G  +   A       V  +D SE ML    +
Sbjct: 16  QDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHYE---VTGVDLSEEMLEIAQE 72

Query: 209 FIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSN---AVAEISRILR 265
              + N     ++     D+  L              +L+   + ++        +R+L 
Sbjct: 73  KAMETN----RHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLT 128

Query: 266 SGGVFVGTTFLRYTSSTSLTGRVLREDSAE 295
            GG  +      Y   T   G+     + +
Sbjct: 129 DGGKLLFDVHSPYKMETLFNGKTYATHAEQ 158

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 63.1 bits (153), Expect = 6e-12
 Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 19/130 (14%)

Query: 145 RSGFPGPDEEFKMAQEYFKSAQGGLLV-DVSCGSGLFSRKFAKSGTYSGVVALDFSENML 203
                GPD E        +       V +  CG G  + +F          A DFS  +L
Sbjct: 26  ARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQAAR--WAAYDFSPELL 83

Query: 204 RQCYDFIKQDNTILTSNLALVRADV-CRLPFA-SGFVDAVHAGAALHCWPSPSNAVAEIS 261
           +               +  +   +    LP         +           P++ +  + 
Sbjct: 84  KLARA--------NAPHADVYEWNGKGELPAGLGAPFGLIV------SRRGPTSVILRLP 129

Query: 262 RILRSGGVFV 271
            +      F+
Sbjct: 130 ELAAPDAHFL 139

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 64.3 bits (156), Expect = 7e-12
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 12/117 (10%)

Query: 167 GGLLVDVSCGSGLFSRKFAK-SGTYSGVVALDFSENML-----RQCYDFIKQDNTILTSN 220
           G  ++D+ CG+G      +K  G +  V+ +D  +N L        Y   K   +   SN
Sbjct: 84  GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSN 143

Query: 221 LALVRADV------CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
           +  ++  +               VD V +    +   +      EI R+LR GG   
Sbjct: 144 VRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELY 200

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 63.2 bits (154), Expect = 8e-12
 Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 13/158 (8%)

Query: 152 DEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
            +      E            +D++CG+G  +         +   A+D S+ ML +  + 
Sbjct: 21  KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF-KN-TWAVDLSQEMLSEAENK 78

Query: 210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVH-AGAALHCWPSPS---NAVAEISRILR 265
            +           L   D+  L     F D +     + +              +S  L+
Sbjct: 79  FRSQG----LKPRLACQDISNLNINRKF-DLITCCLDSTNYIIDSDDLKKYFKAVSNHLK 133

Query: 266 SGGVFVGTTFLRYTSSTSLTGRVLREDSAELQLFDRRR 303
            GGVF+      Y  S  L       D  E+  +   +
Sbjct: 134 EGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQ 171

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 63.2 bits (153), Expect = 1e-11
 Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 7/139 (5%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G ++  V CG          S      +V +D+    L             L   + L R
Sbjct: 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA--LAGQITLHR 176

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVA---EISRILRSGGVFVGTTFLRYTSST 282
            D  +L    G+ D + +       P  +          + L+ GG  V +      + +
Sbjct: 177 QDAWKLDTREGY-DLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALS 235

Query: 283 SLTGRVLREDSAELQLFDR 301
             +   ++          +
Sbjct: 236 PDSPWDMQAIDPHDLQLQQ 254

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 8/139 (5%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
           E  K  + G  +D+ CG+G  S   A +G Y  V A D +   +         +N     
Sbjct: 26  EAVKVVKPGKTLDLGCGNGRNSLYLAANG-YD-VDAWDKNAMSIANVERIKSIENL---D 80

Query: 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277
           NL     D+  L F   + D + +   L    +      +A + R  + GG  +    + 
Sbjct: 81  NLHTRVVDLNNLTFDRQY-DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMD 139

Query: 278 YTSSTSLTGRVLREDSAEL 296
                   G        EL
Sbjct: 140 TADYPCTVGFPFAFKEGEL 158

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 10/115 (8%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
           +     +   ++D++CG+G+ + + A+ G Y  VV LD  E MLR      K+ N     
Sbjct: 35  KEDAKREVRRVLDLACGTGIPTLELAERG-YE-VVGLDLHEEMLRVARRKAKERN----L 88

Query: 220 NLALVRADVCRLPFASGFVDAVHA-GAALHCWPSPSN--AVAEISRILRSGGVFV 271
            +  ++ DV  + F + F DAV    + +  +         ++++  L+ GGVF+
Sbjct: 89  KIEFLQGDVLEIAFKNEF-DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 57.3 bits (138), Expect = 6e-10
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 4/120 (3%)

Query: 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN--T 215
                KS     ++D+ CG G       K  ++  +  +D S ++L +  D +K D    
Sbjct: 21  VVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPE 80

Query: 216 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT 273
           +    ++L ++ +          DA      +              +    R   V V T
Sbjct: 81  MQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 57.4 bits (138), Expect = 8e-10
 Identities = 14/118 (11%), Positives = 34/118 (28%), Gaps = 6/118 (5%)

Query: 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT 215
           +  +E          +D   G G  +++      +  V  +D +E+ L Q   ++ ++  
Sbjct: 69  RFLREGPNKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGK 127

Query: 216 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFV 271
                       +          D +     +        +  +      LR  G+ V
Sbjct: 128 ---RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIV 182

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 25/158 (15%), Positives = 48/158 (30%), Gaps = 28/158 (17%)

Query: 115 YTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLL-VDV 173
           Y+    A+  LF+    +FL    + + F       P +         +     L+  D 
Sbjct: 18  YSGPSSAAQRLFQEDPEAFLL---YHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADF 74

Query: 174 SCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233
            CG    +                        C+D    D  +          D+ ++P 
Sbjct: 75  GCGDCRLASSIRNPVH----------------CFDLASLDPRV-------TVCDMAQVPL 111

Query: 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
               VD      +L    +  + + E +R+L+ GG+  
Sbjct: 112 EDESVDVAVFCLSLM-GTNIRDFLEEANRVLKPGGLLK 148

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 15/112 (13%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
              L+D +CG+G  ++  ++      V+ LD S++ L        ++NT   +N++    
Sbjct: 57  ELPLIDFACGNGTQTKFLSQFF--PRVIGLDVSKSALEIA----AKENT--AANISYRLL 108

Query: 227 DVCRLPFASGFVDA-----VHAGAALHCWPSP--SNAVAEISRILRSGGVFV 271
           D      A+          ++     H  P          +  +L   G   
Sbjct: 109 DGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMY 160

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 17/126 (13%)

Query: 152 DEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
             E        +    +   L+DV+CG+G+  R  A S   + V  L+ S +ML      
Sbjct: 34  HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF-GT-VEGLELSADMLAIA--- 88

Query: 210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVH-AGAALHCWPSPS---NAVAEISRILR 265
            ++ N     +  L   D+        F  AV    +++      +    A+   +  + 
Sbjct: 89  -RRRN----PDAVLHHGDMRDFSLGRRF-SAVTCMFSSIGHLAGQAELDAALERFAAHVL 142

Query: 266 SGGVFV 271
             GV V
Sbjct: 143 PDGVVV 148

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 17/126 (13%)

Query: 152 DEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
             E     +  +S   +   L+DV+CG+G     F K         L+ SE+ML      
Sbjct: 24  AAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF-GD-TAGLELSEDMLTHA--- 78

Query: 210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVH-AGAALHCWPSPS---NAVAEISRILR 265
            ++       +  L + D+        F  AV    +++    +      AVA  +  L 
Sbjct: 79  -RKRL----PDATLHQGDMRDFRLGRKF-SAVVSMFSSVGYLKTTEELGAAVASFAEHLE 132

Query: 266 SGGVFV 271
            GGV V
Sbjct: 133 PGGVVV 138

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 13/126 (10%), Positives = 27/126 (21%), Gaps = 9/126 (7%)

Query: 149 PGPD-EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY 207
              D E  +              +D   G G  ++       Y+    L+  ++ML +  
Sbjct: 75  HDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAK 133

Query: 208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILR 265
             +             + A +          D +                      + L 
Sbjct: 134 RELAGM-----PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALT 188

Query: 266 SGGVFV 271
             G   
Sbjct: 189 PNGYIF 194

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 55.7 bits (134), Expect = 4e-09
 Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 6/126 (4%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
             G +++++ G G  +  F   G +  V AL+ S ++L      + +    +     LV+
Sbjct: 82  VSGPVLELAAGMGRLTFPFLDLG-WE-VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQ 139

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRYTSST 282
            D+        F   V   +        +      A +   L  GG F+ +  +   + +
Sbjct: 140 GDMSAFALDKRF-GTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAES 198

Query: 283 SLTGRV 288
               R 
Sbjct: 199 EPLERK 204

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 54.5 bits (131), Expect = 5e-09
 Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 4/120 (3%)

Query: 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NT 215
                K +    ++D+ CG G   +   K   +  +  +D S   L    + + +     
Sbjct: 21  VVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPR 80

Query: 216 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT 273
                L L++  +          DA      +              +    +   V V T
Sbjct: 81  NQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT 140

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 16/112 (14%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENML---RQCYDFIKQDNTILTSNLA 222
           +   ++D+ C SG       ++GT   V  ++         ++  D +   +        
Sbjct: 32  EWKEVLDIGCSSGALGAAIKENGTR--VSGIEAFPEAAEQAKEKLDHVVLGDI------- 82

Query: 223 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274
               +   +P+     D V  G  L     P   + ++   ++  GV + + 
Sbjct: 83  ----ETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI 130

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           ++ C +G F+ K A       +  +D     + +         T   S+++    D+ + 
Sbjct: 57  EIGCAAGAFTEKLAPHCKR--LTVIDVMPRAIGRA-----CQRTKRWSHISWAATDILQF 109

Query: 232 PFASGFVDAVHAGAALHCWPSPS---NAVAEISRILRSGG-VFVGT 273
             A  F D +     L+     +    A+  + ++L  GG +  G+
Sbjct: 110 STAELF-DLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 52.7 bits (126), Expect = 4e-08
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 21/161 (13%)

Query: 124 ELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRK 183
           + +     + +++       +R+      E         +      ++DV+CG+G+ S  
Sbjct: 20  DQYADGEAARVWQLYIGDTRSRT-----AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIM 74

Query: 184 FAKSGTYSGVVALDFSENML---RQCYDFIKQDNTILTSNLALVRADVC--RLPFASGFV 238
             + G +S V ++D S+ ML    +     +++       +           +P   GF 
Sbjct: 75  LVEEG-FS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF- 131

Query: 239 DAV-HAGAALHCWPSPSN-------AVAEISRILRSGGVFV 271
           DAV   G +    P           A+  I+ ++R GG+ V
Sbjct: 132 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 52.0 bits (124), Expect = 5e-08
 Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 8/108 (7%)

Query: 172 DVSCGSGLFSRKFAKSGTYSG-VVALDFSEN------MLRQCYDFIKQDNTILTSNLALV 224
           ++ CG G  S   A     SG V  +D +         L Q ++ +          +   
Sbjct: 49  EIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFN 108

Query: 225 RADVCRL-PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
                 L P A    D V    +L  + S +        +        
Sbjct: 109 TNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVD 156

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 50.7 bits (121), Expect = 7e-08
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 13/116 (11%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G  +VD +CG+G  +   A     +G V   D  +  +      +   N  L   + L++
Sbjct: 23  GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN--LIDRVTLIK 80

Query: 226 ADVCR-LPFASGFVDAVHAGAALHCWP---------SPSNAVAEISRILRSGGVFV 271
                   +    V AV                   +   A+++   +L +GG+  
Sbjct: 81  DGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIIT 136

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 9/147 (6%)

Query: 133 FLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG 192
                  ++    S             +  K      ++D+ CG G  S   +  G    
Sbjct: 87  CTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLG--YD 144

Query: 193 VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPS 252
           V + D +EN +    +  +++N     N++    D+        + D + +         
Sbjct: 145 VTSWDHNENSIAFLNETKEKENL----NISTALYDINAANIQENY-DFIVSTVVFMFLNR 199

Query: 253 PSNA--VAEISRILRSGGVFVGTTFLR 277
                 +  +      GG  +    + 
Sbjct: 200 ERVPSIIKNMKEHTNVGGYNLIVAAMS 226

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 6/114 (5%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           +G  ++D+ CG G    K+ ++G       +D +E  +       +              
Sbjct: 64  RGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD 122

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPS----NAVAEISRILRSGGVFVGTTF 275
           +    +     F D + +  + H   S S     A   I+R LR GG F+ T  
Sbjct: 123 SYGRHMDLGKEF-DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score = 49.0 bits (116), Expect = 6e-07
 Identities = 18/129 (13%), Positives = 44/129 (34%), Gaps = 15/129 (11%)

Query: 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN 220
           +   +    ++ +  G+G    K+      + +VA D   + + +  +   + N+ + + 
Sbjct: 43  FLDDSNKRKVLAIDFGNGADLEKYFYGEI-ALLVATDPDADAIARGNERYNKLNSGIKTK 101

Query: 221 LALVRADVC-----------RLPFASGFVDAVHAGAALH-CWPSP--SNAVAEISRILRS 266
                               R  F  G  + +    A+H  +     +  +  +S +  S
Sbjct: 102 YYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS 161

Query: 267 GGVFVGTTF 275
           GG  + TT 
Sbjct: 162 GGKVLITTM 170

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 48.9 bits (116), Expect = 7e-07
 Identities = 9/112 (8%), Positives = 28/112 (25%), Gaps = 12/112 (10%)

Query: 172 DVSCGSGLFSRKFAK------SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
            +  G+G    +          G       ++ S   + +  + + + + +     A  +
Sbjct: 58  SIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHK 117

Query: 226 ADV------CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
                              D +H    L+        +     +L +    +
Sbjct: 118 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKML 169

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 6/122 (4%)

Query: 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTI 216
           A ++ + +    LVD  CGSG           +   ++ +D S   L +    +      
Sbjct: 713 ALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK 772

Query: 217 LTSNLA---LVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFV 271
              N+    L    +         VD       +             ++  +     + V
Sbjct: 773 EACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832

Query: 272 GT 273
            T
Sbjct: 833 ST 834

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF-IKQDNTILTSNLALVRAD 227
           + +D+  G G    K A +   +  + +D  +  L       IK+ +    SN+  V A 
Sbjct: 27  VHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAA 86

Query: 228 VCRLPFA-SGFVDAVHA----GAALHCWPSPSNAV-AEISRILRSGGVFVGTT 274
              LPF      D++      G  L     P+  + + ++ + +    F   T
Sbjct: 87  AESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 12/163 (7%)

Query: 137 RGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVV-A 195
           R W  N  RS                   +G  ++ +   SG  +   +      G +  
Sbjct: 53  REW--NAYRSKLA---AALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYG 107

Query: 196 LDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSN 255
           ++F+  ++R     ++        N+  +  D          V+ V    A    P  + 
Sbjct: 108 VEFAPRVMRDLLTVVRD-----RRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAA 162

Query: 256 AVAEISRI-LRSGGVFVGTTFLRYTSSTSLTGRVLREDSAELQ 297
            V   +R  LR GG  +     R    T+    V + +   L 
Sbjct: 163 IVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLM 205

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 45.7 bits (108), Expect = 7e-06
 Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 26/147 (17%)

Query: 133 FLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG 192
           FL+E  +R +             +    YFK      ++D+ CG G F     + G    
Sbjct: 15  FLFEEKFRGSRELV-----KARLRRYIPYFKG--CRRVLDIGCGRGEFLELCKEEGIE-- 65

Query: 193 VVALDFSENMLRQC---YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-H 248
            + +D +E+M++ C   ++ +K D       L               ++D V     + H
Sbjct: 66  SIGVDINEDMIKFCEGKFNVVKSD---AIEYLK---------SLPDKYLDGVMISHFVEH 113

Query: 249 CW-PSPSNAVAEISRILRSGGVFVGTT 274
                    ++     ++     V  +
Sbjct: 114 LDPERLFELLSLCYSKMKYSSYIVIES 140

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 27/156 (17%), Positives = 46/156 (29%), Gaps = 19/156 (12%)

Query: 133 FLYERGWRQNFNRS-GFPGPDEEFKMAQ-EYFKSAQGGL-----LVDVSCGSGLFSRKFA 185
                G  ++              + AQ E+     G       LVD  CG G       
Sbjct: 77  DRAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAH 136

Query: 186 KSGTYSG--VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243
           +     G  V  +  S           ++    +  ++     ++   PF  G V A   
Sbjct: 137 R---RFGSRVEGVTLSAAQADFGNRRARELR--IDDHVRSRVCNMLDTPFDKGAVTASWN 191

Query: 244 -GAALHC-WPSPSNAVAEISRILRSGGVFVGTTFLR 277
             + ++          +E SR L+ GG +V  T   
Sbjct: 192 NESTMYVDLHD---LFSEHSRFLKVGGRYVTITGCW 224

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 10/141 (7%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
           +     +   ++ +   +G      A       V A++++  ++R+  D   +       
Sbjct: 68  KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----E 122

Query: 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNA---VAEISRILRSGGVFVGTTFL 276
           N+  +  D  +    +  V+ V           P+ A   +      L+ GG  +     
Sbjct: 123 NIIPILGDANKPQEYANIVEKVD--VIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKA 180

Query: 277 RYTSSTSLTGRVLREDSAELQ 297
           R    T     + +E    L+
Sbjct: 181 RSIDVTKDPKEIFKEQKEILE 201

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 13/115 (11%)

Query: 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRAD 227
           +++DV  G G    K A+      VVALD  ++ + +               NL  + A 
Sbjct: 30  VVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWAT 89

Query: 228 VCRLPFASGFVDAVHAGAALHCWP--------SPSNAVAEISRILRSGGVFVGTT 274
             RLP  SG V  +H    L  W         S    +  ++ + R G  F+   
Sbjct: 90  AERLPPLSG-VGELHV---LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 17/128 (13%)

Query: 156 KMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD 213
            M+ ++         ++VD + G+G  +   A       V A D  E  L +    +   
Sbjct: 10  HMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKK--VYAFDVQEQALGKTSQRLSDL 67

Query: 214 NTILTSNLALVRADVCRLP-------FASGFVDAVHAGAALHCWPSPS---NAVAEISRI 263
                 N  L+      L         A+ F       A       P     A+ +I   
Sbjct: 68  G---IENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDR 124

Query: 264 LRSGGVFV 271
           L  GG   
Sbjct: 125 LEVGGRLA 132

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 17/144 (11%), Positives = 40/144 (27%), Gaps = 14/144 (9%)

Query: 135 YERGWRQNFNRSGFPGPD---EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYS 191
           Y++  +           D       M + +    + G L+++    G F+ +  +    +
Sbjct: 8   YDQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF--N 65

Query: 192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP 251
            +  ++ SE  +             L   +  + +          + D +     L    
Sbjct: 66  DITCVEASEEAISHA-------QGRLKDGITYIHSRFEDAQLPRRY-DNIVLTHVLEHID 117

Query: 252 SPSNAVAEI-SRILRSGGVFVGTT 274
            P   +  I    L  GG      
Sbjct: 118 DPVALLKRINDDWLAEGGRLFLVC 141

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++D+  GSG     +A+    +    +D S     Q     ++    ++  +  +  D  
Sbjct: 40  ILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDAA 96

Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
                    D      A       + A   +++ L+ GG+ +
Sbjct: 97  GYVANEKC-DVAACVGATWIAGGFAGAEELLAQSLKPGGIML 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	304
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.86
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.84
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.84
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.84
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.83
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.83
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.82
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.82
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.81
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.81
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.81
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.81
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.81
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.8
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.8
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.8
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.79
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.79
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.79
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.79
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.79
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.79
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.79
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.78
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.78
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.78
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.78
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.78
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.78
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.77
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.77
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.77
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.77
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.77
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.76
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.76
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.76
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.76
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.76
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.76
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.76
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.75
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.75
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.75
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.74
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.74
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.74
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.74
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.74
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.74
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.74
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.74
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.74
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.74
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.74
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.73
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.73
3ocj_A	305	Putative exported protein; structural genomics, PS	99.73
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.72
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.72
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.72
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.72
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.71
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.71
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.7
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.7
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.7
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.7
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.7
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.7
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.7
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.69
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.69
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.69
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.68
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.68
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.68
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.68
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.68
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.68
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.68
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.68
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.68
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.68
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.67
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.67
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.67
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.67
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.67
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.67
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.66
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.66
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.66
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.66
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.66
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.66
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.65
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.65
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.65
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.65
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.65
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.64
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.64
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.64
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.64
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.64
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.64
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.64
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.64
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.63
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.63
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.63
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.63
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.63
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.62
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.62
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.62
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.62
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.62
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.62
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.62
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.62
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.61
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.61
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.61
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.61
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.61
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.61
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.61
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.61
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.61
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.61
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.61
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.61
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.6
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.6
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.6
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.59
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.59
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.59
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.59
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.59
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.59
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.59
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.58
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.58
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.58
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.58
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.58
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.58
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.57
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.57
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.57
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.57
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.57
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.57
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.57
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.57
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.56
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.56
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.56
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.56
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.56
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.55
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.55
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.55
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.55
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.55
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.54
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.54
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.54
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.54
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.54
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.54
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.54
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.53
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.53
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.53
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.53
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.52
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.52
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.52
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.52
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.51
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.51
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.51
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.51
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.51
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.51
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.5
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.49
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.49
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.49
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.49
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.49
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.48
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.48
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.48
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.46
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.45
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.45
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.44
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.44
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.44
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.44
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.43
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.43
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.43
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.43
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.43
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.42
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.42
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.41
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.4
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.4
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.39
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.38
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.38
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.38
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.38
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.37
2o07_A	304	Spermidine synthase; structural genomics, structur	99.37
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.37
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.36
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.36
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.36
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.36
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.35
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.35
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.35
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.34
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.33
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.33
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.33
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.31
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.31
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.31
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.31
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.31
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.3
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.3
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.29
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.29
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.28
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.26
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.24
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.24
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.23
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.23
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.2
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.17
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.17
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.16
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.16
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.15
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.14
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.1
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.05
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.05
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.03
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.01
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.0
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.98
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.97
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.97
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.95
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.93
3lkd_A	542	Type I restriction-modification system methyltrans	98.9
3khk_A	544	Type I restriction-modification system methylation	98.9
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.89
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.85
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.82
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.82
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.8
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.73
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.7
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.69
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.65
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.64
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.63
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.6
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.59
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.55
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.53
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.47
2jny_A	67	Uncharacterized BCR; structure, CGR1, NESG, struct	98.45
2jr6_A	68	UPF0434 protein NMA0874; solution, structural geno	98.42
2js4_A	70	UPF0434 protein BB2007; NESG, northeast structural	98.4
2hf1_A	68	Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A	98.39
2pk7_A	69	Uncharacterized protein; NESG, PLR1, putative tetr	98.39
3ufb_A	530	Type I restriction-modification system methyltran	98.38
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.38
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.37
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.35
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.3
2kpi_A	56	Uncharacterized protein SCO3027; zinc finger, PSI-	98.26
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.23
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.14
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.13
2k5r_A	97	Uncharacterized protein XF2673; solution structure	98.11
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.98
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.98
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.94
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.91
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.57
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.44
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.42
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.35
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.34
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.3
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	96.69
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.54
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.52
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.31
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.18
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.16
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.74
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	95.62
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.6
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.52
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.48
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.45
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.38
3q87_A	125	Putative uncharacterized protein ECU08_1170; SAM-m	95.31
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.08
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.05
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.04
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.95
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.79
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.7
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.68
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.62
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.46
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	94.45
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.43
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.43
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	94.43
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.38
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	94.17
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	94.08
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	93.98
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	93.89
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	93.86
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	93.86
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	93.84
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	93.84
3gms_A	340	Putative NADPH:quinone reductase; structural genom	93.8
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.78
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	93.7
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	93.67
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.6
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.59
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	93.54
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	93.41
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	93.35
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	93.21
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	93.18
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	93.17
2akl_A	138	PHNA-like protein PA0128; two domains, Zn binding	93.11
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	93.06
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	93.03
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	92.86
2j6a_A	141	Protein TRM112; translation termination, methyltra	92.83
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	92.8
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	92.76
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	92.71
4eye_A	342	Probable oxidoreductase; structural genomics, niai	92.63
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	92.6
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	92.46
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	92.43
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.32
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	92.23
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	92.16
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	92.07
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	92.03
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	92.03
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	91.74
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	91.69
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	91.68
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	91.54
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	91.5
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	91.41
1qyp_A	57	RNA polymerase II; transcription, RPB9, Zn ribbon,	91.36
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	91.24
2k4x_A	55	30S ribosomal protein S27AE; metal-binding, ribonu	91.1
3j21_g	51	50S ribosomal protein L40E; archaea, archaeal, KIN	91.04
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	90.99
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	90.99
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	90.9
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	90.84
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	90.57
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	90.35
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	90.35
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	90.35
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	90.34
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	90.24
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	90.21
2zig_A	297	TTHA0409, putative modification methylase; methylt	90.16
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.15
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	90.11
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	90.08
3c85_A	183	Putative glutathione-regulated potassium-efflux S	90.06
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	89.85
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.81
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	89.7
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	89.67
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	89.54
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	89.53
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	89.44
1tfi_A	50	Transcriptional elongation factor SII; transcripti	89.39
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	89.35
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	89.12
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	89.11
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	89.07
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	88.84
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	88.79
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	88.68
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	88.63
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	88.49
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	88.46
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.36
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	88.24
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	88.21
3j21_i	83	50S ribosomal protein L37AE; archaea, archaeal, KI	88.07
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	88.05
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	87.93
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	87.82
3me5_A	482	Cytosine-specific methyltransferase; structural ge	87.52
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	87.49
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	87.34
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	87.13
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	87.07
3iz5_m	92	60S ribosomal protein L43 (L37AE); eukaryotic ribo	87.03
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	87.02
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	87.0
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	86.98
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	86.85
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	86.83
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	86.82
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	86.64
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	86.49
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	86.41
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	86.23
4a17_Y	103	RPL37A, 60S ribosomal protein L32; eukaryotic ribo	86.07
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	85.9
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	85.75
3izc_m	92	60S ribosomal protein RPL43 (L37AE); eukaryotic ri	85.75
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	85.73
1xhl_A	297	Short-chain dehydrogenase/reductase family member	85.61
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	85.33
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	85.33
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	85.28
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	85.21
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	85.18
3po3_S	178	Transcription elongation factor S-II; RNA polymera	84.94
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	84.9
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	84.6
3h0g_I	113	DNA-directed RNA polymerases I, II, and III subuni	84.52
1ffk_W	73	Ribosomal protein L37AE; ribosome assembly, RNA-RN	84.14
2ct7_A	86	Ring finger protein 31; IBR, structural genomics,	84.09
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	84.05
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	84.0
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	83.98
3h0g_I	113	DNA-directed RNA polymerases I, II, and III subuni	83.91
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	83.84
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	83.47
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	83.2
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	83.14
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	83.13
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	83.02
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	82.96
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	82.9
1spx_A	278	Short-chain reductase family member (5L265); paral	82.74
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	82.49
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	82.32
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	82.18
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	82.15
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	81.92
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	81.73
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	81.56
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	81.46
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	81.38
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	81.27
2km1_A	136	Protein DRE2; yeast, antiapoptotic, protein bindin	81.24
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	81.24
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	80.79
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	80.75
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	80.59
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	80.55
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	80.45

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.86  E-value=4.2e-21  Score=168.90  Aligned_cols=177  Identities=24%  Similarity=0.421  Sum_probs=126.6

Q ss_pred             eeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCeeeeecccCccCccCCCccccccccCchhhHHHHHhHH
Q 021975           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWR  140 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w~  140 (304)
                      +.||.|++.+....           ..++|++|+..+..++||++++......... . ....+.+           ..+
T Consensus         3 ~~Cp~C~~~~~~~~-----------~~~~C~~~~~~~~~~~Gy~~~~~~~~~~~~~-~-~~~~~~~-----------~~~   58 (269)
T 1p91_A            3 FSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRD-P-GDSAEMM-----------QAR   58 (269)
T ss_dssp             BBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCC-C-SSSHHHH-----------HHH
T ss_pred             ccCCCCCccceeCC-----------CEEECCCCCcCCcCCCEEEEeecccccCCCC-C-CCCHHHH-----------HHH
Confidence            78999999886633           5799999998888899999988653321110 0 0000000           001


Q ss_pred             HhhhcCCCCCc--HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCC
Q 021975          141 QNFNRSGFPGP--DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT  218 (304)
Q Consensus       141 ~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~  218 (304)
                      ..+...++..+  ....+.+...+. .++.+|||||||+|.++..+++..+..+++|+|+++.+++.|+++.        
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~--------  129 (269)
T 1p91_A           59 RAFLDAGHYQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY--------  129 (269)
T ss_dssp             HHHHTTTTTHHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC--------
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC--------
Confidence            22222222211  122233333332 3578999999999999999999854569999999999999998852        


Q ss_pred             CCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          219 SNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       219 ~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .++.++.+|+..+++++++||+|++.++..       +++++.++|||||++++.++..
T Consensus       130 ~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~-------~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          130 PQVTFCVASSHRLPFSDTSMDAIIRIYAPC-------KAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             TTSEEEECCTTSCSBCTTCEEEEEEESCCC-------CHHHHHHHEEEEEEEEEEEECT
T ss_pred             CCcEEEEcchhhCCCCCCceeEEEEeCChh-------hHHHHHHhcCCCcEEEEEEcCH
Confidence            568899999999998889999999976532       4899999999999999999875

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.84  E-value=2.2e-21  Score=181.43  Aligned_cols=116  Identities=14%  Similarity=0.185  Sum_probs=92.5

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      ..+.+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.|+++    +. ......+...+...+++
T Consensus        95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~gvD~s~~~~~~a~~~----~~-~~~~~~~~~~~~~~l~~  167 (416)
T 4e2x_A           95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV--RHLGFEPSSGVAAKAREK----GI-RVRTDFFEKATADDVRR  167 (416)
T ss_dssp             HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC--EEEEECCCHHHHHHHHTT----TC-CEECSCCSHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC--cEEEECCCHHHHHHHHHc----CC-CcceeeechhhHhhccc
Confidence            344555666666788999999999999999999876  999999999999999874    10 00001122334444566


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ++++||+|++.+++||++|+..+++++.++|||||++++.++.
T Consensus       168 ~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          168 TEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             HHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            6789999999999999999999999999999999999998875

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.84  E-value=4.4e-20  Score=162.20  Aligned_cols=127  Identities=17%  Similarity=0.276  Sum_probs=105.9

Q ss_pred             CCCcHHHHHHHHHhhc--ccCCCeEEEEcCCccHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEE
Q 021975          148 FPGPDEEFKMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL  223 (304)
Q Consensus       148 ~~~~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~  223 (304)
                      .|.+.+..+++..+..  ..++.+|||||||+|.++..+++..  ++.+|+|+|+|+.|++.|+++++..+  ...++.+
T Consensus        50 vP~Y~~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~  127 (261)
T 4gek_A           50 VPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDV  127 (261)
T ss_dssp             STTHHHHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc--cCceEEE
Confidence            3555665555544433  3468899999999999999999874  35699999999999999999998876  4578999


Q ss_pred             EEccCCCCCCCCCccceEEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEeCCC
Q 021975          224 VRADVCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       224 ~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      +++|+.++|++  .||+|++.++|+|++++.  .+|++++++|||||+|++.+....
T Consensus       128 ~~~D~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~  182 (261)
T 4gek_A          128 IEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF  182 (261)
T ss_dssp             EESCTTTCCCC--SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred             eeccccccccc--ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence            99999998864  599999999999998654  689999999999999999987653

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.84  E-value=3.3e-20  Score=162.40  Aligned_cols=117  Identities=25%  Similarity=0.392  Sum_probs=104.7

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      +.+.+.+...++.+|||||||+|.++..+++.++  +++|+|+|+.+++.++++.+..+   ..++.++.+|+..+|+++
T Consensus        27 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~---~~~v~~~~~d~~~l~~~~  101 (260)
T 1vl5_A           27 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNG---HQQVEYVQGDAEQMPFTD  101 (260)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCC-CCCSCT
T ss_pred             HHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcC---CCceEEEEecHHhCCCCC
Confidence            4455566666788999999999999999999886  99999999999999999987765   257999999999999999


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++||+|++..+++|++|+..+++++.++|||||+|++.++..
T Consensus       102 ~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~  143 (260)
T 1vl5_A          102 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  143 (260)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence            999999999999999999999999999999999999987654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.83  E-value=1.9e-20  Score=164.06  Aligned_cols=113  Identities=27%  Similarity=0.326  Sum_probs=99.4

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      +.++.+.+..+...  +.+|||||||+|.++..|++.+.  +|+|+|+|+.|++.|++         ..++.++++|+++
T Consensus        26 p~~l~~~l~~~~~~--~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~---------~~~v~~~~~~~e~   92 (257)
T 4hg2_A           26 PRALFRWLGEVAPA--RGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALR---------HPRVTYAVAPAED   92 (257)
T ss_dssp             CHHHHHHHHHHSSC--SSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCC---------CTTEEEEECCTTC
T ss_pred             HHHHHHHHHHhcCC--CCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhh---------cCCceeehhhhhh
Confidence            45666677766543  56999999999999999999886  99999999999988764         3689999999999


Q ss_pred             CCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +|+++++||+|++..++||+ ++..+++++.|+|||||+|++.++..
T Consensus        93 ~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~  138 (257)
T 4hg2_A           93 TGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGL  138 (257)
T ss_dssp             CCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             hcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            99999999999999999776 68899999999999999999998865

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.83  E-value=2.1e-19  Score=160.26  Aligned_cols=121  Identities=16%  Similarity=0.208  Sum_probs=107.3

Q ss_pred             HHHHHHHhh----cccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975          154 EFKMAQEYF----KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (304)
Q Consensus       154 ~~~~l~~~l----~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (304)
                      ..+.+...+    ...++.+|||||||+|.++..+++. +.  +++|+|+++.+++.++++.+..+  ...++.++.+|+
T Consensus        66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~  141 (297)
T 2o57_A           66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV--SIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSF  141 (297)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHHT--CTTTEEEEECCT
T ss_pred             HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEEcCc
Confidence            345555666    5567889999999999999999987 44  99999999999999999988776  456899999999


Q ss_pred             CCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      .++|+++++||+|++..+++|++++..+++++.++|||||+|++.++...
T Consensus       142 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  191 (297)
T 2o57_A          142 LEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE  191 (297)
T ss_dssp             TSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             ccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence            99999999999999999999999999999999999999999999987653

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.82  E-value=2.3e-19  Score=152.14  Aligned_cols=122  Identities=26%  Similarity=0.380  Sum_probs=107.1

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ....+.+.+.+...++ +|||+|||+|.++..+++. +..+++|+|+++.+++.++++++..+  ...++.++++|+.++
T Consensus        30 ~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~  105 (219)
T 3dlc_A           30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADAN--LNDRIQIVQGDVHNI  105 (219)
T ss_dssp             HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECBTTBC
T ss_pred             HHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhcc--ccCceEEEEcCHHHC
Confidence            3445566666665445 9999999999999999998 45699999999999999999998877  456899999999999


Q ss_pred             CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++++++||+|++..+++|++++..+++++.++|||||++++.+...
T Consensus       106 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  151 (219)
T 3dlc_A          106 PIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFG  151 (219)
T ss_dssp             SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             CCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence            9989999999999999999999999999999999999999987554

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.82  E-value=1.7e-19  Score=157.17  Aligned_cols=124  Identities=15%  Similarity=0.166  Sum_probs=109.3

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (304)
                      +......+.+...+...++.+|||||||+|.++..+++.. ..+++|+|+|+.+++.++++.+..+  ...++.++++|+
T Consensus        19 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~v~~~~~d~   95 (256)
T 1nkv_A           19 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDA   95 (256)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCC
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECCh
Confidence            3445566677777777788899999999999999999874 3499999999999999999988776  346899999999


Q ss_pred             CCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .++++ +++||+|++..+++|++++..+++++.++|||||++++.++.
T Consensus        96 ~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  142 (256)
T 1nkv_A           96 AGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY  142 (256)
T ss_dssp             TTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             HhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCc
Confidence            99887 789999999999999999999999999999999999998764

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.81  E-value=3.4e-19  Score=156.79  Aligned_cols=121  Identities=26%  Similarity=0.379  Sum_probs=107.5

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      .+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++.+..+  ...++.++.+|+.++|++
T Consensus        50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~  126 (273)
T 3bus_A           50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAG--LANRVTFSYADAMDLPFE  126 (273)
T ss_dssp             HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCSC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECccccCCCC
Confidence            3455566666678899999999999999999874 4599999999999999999988776  346799999999999998


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      +++||+|++..+++|++++..+++++.++|||||++++.++...
T Consensus       127 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  170 (273)
T 3bus_A          127 DASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLL  170 (273)
T ss_dssp             TTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred             CCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeecc
Confidence            89999999999999999999999999999999999999987653

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.81  E-value=3.2e-19  Score=151.86  Aligned_cols=124  Identities=13%  Similarity=0.112  Sum_probs=104.1

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc--CCCCeEEEEccCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCR  230 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d~~~  230 (304)
                      +..+.+.+.+...++.+|||||||+|.++..+++.++..+++|+|+++.+++.++++++..++.  ...++.++++|+..
T Consensus        16 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~   95 (217)
T 3jwh_A           16 QRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTY   95 (217)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTS
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccc
Confidence            3445666666666788999999999999999999876679999999999999999998765520  01279999999988


Q ss_pred             CCCCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeC
Q 021975          231 LPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .+.+.++||+|++..+++|++++  ..+++++.++|||||+++++...
T Consensus        96 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  143 (217)
T 3jwh_A           96 QDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNI  143 (217)
T ss_dssp             CCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBH
T ss_pred             ccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCc
Confidence            77777899999999999999977  78999999999999977766543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.81  E-value=5.9e-19  Score=152.66  Aligned_cols=117  Identities=18%  Similarity=0.318  Sum_probs=106.0

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      ..+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.++++++..+   ..++.++.+|++.+++++
T Consensus        11 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~   85 (239)
T 1xxl_A           11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKG---VENVRFQQGTAESLPFPD   85 (239)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHT---CCSEEEEECBTTBCCSCT
T ss_pred             chHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCCeEEEecccccCCCCC
Confidence            3455566677889999999999999999999886  99999999999999999988765   257999999999999988


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++||+|++..+++|++++..+++++.++|||||++++.++..
T Consensus        86 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           86 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            999999999999999999999999999999999999988765

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.81  E-value=3.6e-19  Score=151.72  Aligned_cols=123  Identities=16%  Similarity=0.181  Sum_probs=102.9

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc--CCCCeEEEEccCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRL  231 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d~~~l  231 (304)
                      ..+.+.+.+...++.+|||||||+|.++..+++.++..+++|+|+|+.+++.+++++...++.  ...++.++++|+...
T Consensus        17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~   96 (219)
T 3jwg_A           17 RLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR   96 (219)
T ss_dssp             HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC
T ss_pred             HHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc
Confidence            345566666666788999999999999999999886679999999999999999988765410  012799999999888


Q ss_pred             CCCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeC
Q 021975          232 PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ++.+++||+|++..+++|++++  ..+++++.++|||||+++.....
T Consensus        97 ~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  143 (219)
T 3jwg_A           97 DKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK  143 (219)
T ss_dssp             CGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG
T ss_pred             ccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch
Confidence            8778899999999999999977  68999999999999966655543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.81  E-value=5.4e-19  Score=155.28  Aligned_cols=124  Identities=20%  Similarity=0.309  Sum_probs=108.7

Q ss_pred             CCcHHHHHHHHHhhc-ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975          149 PGPDEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (304)
                      +........+...+. ..++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.++++++..+  ...++.++++|
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d  104 (267)
T 3kkz_A           28 PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSG--LQNRVTGIVGS  104 (267)
T ss_dssp             SCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECC
T ss_pred             CCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcC--CCcCcEEEEcC
Confidence            344455555666655 456889999999999999999998 45699999999999999999998877  45679999999


Q ss_pred             CCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +.++++++++||+|++..+++|+ ++..+++++.++|||||++++.++.
T Consensus       105 ~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          105 MDDLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             TTSCCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             hhhCCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            99999888999999999999999 8999999999999999999999875

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.80  E-value=7.2e-19  Score=153.28  Aligned_cols=124  Identities=17%  Similarity=0.283  Sum_probs=108.3

Q ss_pred             CCcHHHHHHHHHhhc-ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975          149 PGPDEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (304)
                      +........+...+. ..++.+|||||||+|.++..+++.++ .+|+|+|+++.+++.++++.+..+  ...++.++++|
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d  104 (257)
T 3f4k_A           28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKAN--CADRVKGITGS  104 (257)
T ss_dssp             SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECC
T ss_pred             CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECC
Confidence            444555556666653 45678999999999999999999975 499999999999999999998877  45669999999


Q ss_pred             CCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +..+++++++||+|++..+++|+ ++..+++++.++|||||++++.++.
T Consensus       105 ~~~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          105 MDNLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             TTSCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             hhhCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEee
Confidence            99999988999999999999999 8999999999999999999999864

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.80  E-value=5.6e-19  Score=150.31  Aligned_cols=119  Identities=17%  Similarity=0.304  Sum_probs=106.3

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      .+...+...++.+|||+|||+|.++..+++.+ +..+++|+|+++.+++.+++++...+.   .++.++.+|+..+++++
T Consensus        28 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~~~  104 (219)
T 3dh0_A           28 KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL---KNVEVLKSEENKIPLPD  104 (219)
T ss_dssp             HHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC---TTEEEEECBTTBCSSCS
T ss_pred             HHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEecccccCCCCC
Confidence            34455556678899999999999999999985 566999999999999999999887762   47999999999999889


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++||+|++..+++|++++..+++++.++|||||++++.++...
T Consensus       105 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  147 (219)
T 3dh0_A          105 NTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE  147 (219)
T ss_dssp             SCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             CCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence            9999999999999999999999999999999999999987764

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.80  E-value=7e-19  Score=155.16  Aligned_cols=119  Identities=19%  Similarity=0.355  Sum_probs=105.9

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      +.+.......++.+|||||||+|.++..+++.++..+++|+|+++.+++.+++++...+   ..++.++.+|+..+++++
T Consensus        27 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~  103 (276)
T 3mgg_A           27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG---IKNVKFLQANIFSLPFED  103 (276)
T ss_dssp             HHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGCCSCT
T ss_pred             HHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEcccccCCCCC
Confidence            34444444457889999999999999999999777899999999999999999988776   357999999999999889


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++||+|++..+++|++++..+++++.++|||||++++.++..
T Consensus       104 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          104 SSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             CCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            999999999999999999999999999999999999988643

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.79  E-value=3.6e-19  Score=150.48  Aligned_cols=112  Identities=15%  Similarity=0.184  Sum_probs=92.1

Q ss_pred             hcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc---------cCCCCeEEEEccCCCCC
Q 021975          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT---------ILTSNLALVRADVCRLP  232 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~---------~~~~~i~~~~~d~~~lp  232 (304)
                      +...++.+|||+|||+|..+..|++.+.  +|+|+|+|+.|++.|+++.+....         ....++.++++|+.+++
T Consensus        18 l~~~~~~~vLD~GCG~G~~~~~la~~g~--~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~   95 (203)
T 1pjz_A           18 LNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT   95 (203)
T ss_dssp             HCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred             cccCCCCEEEEeCCCCcHhHHHHHHCCC--eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC
Confidence            3445678999999999999999999976  999999999999999987643100         01257999999999998


Q ss_pred             CCC-CccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEe
Q 021975          233 FAS-GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ~~~-~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +.+ ++||+|++..+++|++..  ..+++++.++|||||++++.+.
T Consensus        96 ~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~  141 (203)
T 1pjz_A           96 ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL  141 (203)
T ss_dssp             HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            765 799999999999999754  4689999999999998555543

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.79  E-value=1.6e-18  Score=149.01  Aligned_cols=121  Identities=17%  Similarity=0.299  Sum_probs=104.5

Q ss_pred             cHHHHHHHHHhhc-ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC
Q 021975          151 PDEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (304)
Q Consensus       151 ~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (304)
                      .....+.+...+. ..++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.+++++...     .++.++++|+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~  102 (234)
T 3dtn_A           28 FDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN-----LKVKYIEADYS  102 (234)
T ss_dssp             HHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC-----TTEEEEESCTT
T ss_pred             HHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC-----CCEEEEeCchh
Confidence            3444556666665 44678999999999999999999977779999999999999999986543     38999999999


Q ss_pred             CCCCCCCccceEEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEeCC
Q 021975          230 RLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++++ ++||+|++..+++|++++.  .+++++.++|||||++++.++..
T Consensus       103 ~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  151 (234)
T 3dtn_A          103 KYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH  151 (234)
T ss_dssp             TCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             ccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            98876 8999999999999998776  59999999999999999999765

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.79  E-value=1e-18  Score=148.48  Aligned_cols=114  Identities=15%  Similarity=0.264  Sum_probs=99.8

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      ..+...+...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++....     .++.++++|+.+++ ++
T Consensus        41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~-~~  112 (216)
T 3ofk_A           41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRACQRTKRW-----SHISWAATDILQFS-TA  112 (216)
T ss_dssp             HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE--EEEEEESCHHHHHHHHHHTTTC-----SSEEEEECCTTTCC-CS
T ss_pred             HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcccC-----CCeEEEEcchhhCC-CC
Confidence            4455556666778999999999999999999875  9999999999999999987643     47999999999987 67


Q ss_pred             CccceEEecchhccCCCHH---HHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++||+|++..+++|++++.   .+++++.++|||||++++.++..
T Consensus       113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            8999999999999999984   67999999999999999988654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.79  E-value=1.9e-18  Score=155.44  Aligned_cols=119  Identities=18%  Similarity=0.211  Sum_probs=105.8

Q ss_pred             HHHHHhhc-ccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          156 KMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       156 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      +.+.+.+. ..++.+|||||||+|.++..+++. +.  +|+|+|+++.+++.|+++.+..+  ...++.++.+|+.++++
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~  181 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGS--RVEGVTLSAAQADFGNRRARELR--IDDHVRSRVCNMLDTPF  181 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCC
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhcCCC
Confidence            45556665 567889999999999999999988 54  99999999999999999998877  45689999999999998


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      ++++||+|++..+++|+ ++..+++++.++|||||++++.++....
T Consensus       182 ~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~  226 (312)
T 3vc1_A          182 DKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNP  226 (312)
T ss_dssp             CTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred             CCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccc
Confidence            88999999999999999 6999999999999999999999876543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.79  E-value=2.3e-18  Score=153.92  Aligned_cols=123  Identities=20%  Similarity=0.319  Sum_probs=105.9

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhc-CccCCCCeEEEEccC
Q 021975          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADV  228 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~  228 (304)
                      +....+.+..+.. .++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|+++++.. +  ...++.++++|+
T Consensus        22 ~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~v~~~~~d~   98 (299)
T 3g5t_A           22 PSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD--TYKNVSFKISSS   98 (299)
T ss_dssp             CHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC---CCTTEEEEECCT
T ss_pred             CHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccC--CCCceEEEEcCH
Confidence            4556666666654 367899999999999999999753 5679999999999999999998875 2  247899999999


Q ss_pred             CCCCCCC------CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          229 CRLPFAS------GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       229 ~~lp~~~------~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .++++.+      ++||+|++..++||+ ++..+++++.++|||||+|++.++..
T Consensus        99 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~  152 (299)
T 3g5t_A           99 DDFKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYAD  152 (299)
T ss_dssp             TCCGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             HhCCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            9998877      899999999999999 99999999999999999999966543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.79  E-value=1.9e-18  Score=149.12  Aligned_cols=115  Identities=26%  Similarity=0.405  Sum_probs=101.6

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      ..+.+...+.  ++.+|||||||+|.++..+++.+.  +++|+|+++.+++.++++.      ...++.++++|+.++++
T Consensus        43 ~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~------~~~~~~~~~~d~~~~~~  112 (242)
T 3l8d_A           43 IIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGY--KAVGVDISEVMIQKGKERG------EGPDLSFIKGDLSSLPF  112 (242)
T ss_dssp             HHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHTTT------CBTTEEEEECBTTBCSS
T ss_pred             HHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhc------ccCCceEEEcchhcCCC
Confidence            4455555554  478999999999999999999865  9999999999999998864      23689999999999998


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++++||+|++.++++|++++..+++++.++|||||++++.++...
T Consensus       113 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  157 (242)
T 3l8d_A          113 ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPT  157 (242)
T ss_dssp             CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCc
Confidence            899999999999999999999999999999999999999997653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.79  E-value=1.1e-18  Score=151.95  Aligned_cols=115  Identities=18%  Similarity=0.247  Sum_probs=102.0

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      ..+...+...++.+|||||||+|.++..+++.++ .+++|+|+++.+++.++++..      ..++.++++|+.++++++
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~  106 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT------SPVVCYEQKAIEDIAIEP  106 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC------CTTEEEEECCGGGCCCCT
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc------cCCeEEEEcchhhCCCCC
Confidence            3455566666788999999999999999999874 399999999999999998764      267999999999999888


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++||+|++..+++|++++..+++++.++|||||++++.++..
T Consensus       107 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  148 (253)
T 3g5l_A          107 DAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHP  148 (253)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCC
Confidence            999999999999999999999999999999999999987653

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.78  E-value=1e-18  Score=152.67  Aligned_cols=123  Identities=12%  Similarity=0.148  Sum_probs=106.3

Q ss_pred             CcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC
Q 021975          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (304)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (304)
                      ......+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++....     .++.++++|+.
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~  112 (266)
T 3ujc_A           39 GGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN-----NKIIFEANDIL  112 (266)
T ss_dssp             THHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC-----TTEEEEECCTT
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC-----CCeEEEECccc
Confidence            334455666666666778899999999999999999973 349999999999999999865432     58999999999


Q ss_pred             CCCCCCCccceEEecchhccC--CCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          230 RLPFASGFVDAVHAGAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~--~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++++++++||+|++..+++|+  .++..+++++.++|||||++++.++...
T Consensus       113 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  163 (266)
T 3ujc_A          113 TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCAT  163 (266)
T ss_dssp             TCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             cCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            999989999999999999999  7889999999999999999999987653

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.78  E-value=1.6e-18  Score=153.77  Aligned_cols=107  Identities=20%  Similarity=0.288  Sum_probs=98.0

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CCCCccceEEecc
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAGA  245 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~~  245 (304)
                      +.+|||||||+|.++..+++.+.  +++|+|+++.+++.|+++++..+  ...++.++++|+.+++ +.+++||+|++..
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  144 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAERGH--QVILCDLSAQMIDRAKQAAEAKG--VSDNMQFIHCAAQDVASHLETPVDLILFHA  144 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-C--CGGGEEEEESCGGGTGGGCSSCEEEEEEES
T ss_pred             CCEEEEeCCcchHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCcceEEEEcCHHHhhhhcCCCceEEEECc
Confidence            67999999999999999999865  99999999999999999998776  3468999999999887 7789999999999


Q ss_pred             hhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++|++++..+++++.++|||||++++.++..
T Consensus       145 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  176 (285)
T 4htf_A          145 VLEWVADPRSVLQTLWSVLRPGGVLSLMFYNA  176 (285)
T ss_dssp             CGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred             hhhcccCHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence            99999999999999999999999999998754

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.78  E-value=1.3e-18  Score=150.40  Aligned_cols=103  Identities=14%  Similarity=0.162  Sum_probs=93.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .++.+|||||||+|.++..+++.++  +|+|+|+|+.+++.|+++..       .++.++++|+.++ +++++||+|++.
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~-------~~v~~~~~d~~~~-~~~~~fD~v~~~  110 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLK-------DGITYIHSRFEDA-QLPRRYDNIVLT  110 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSC-------SCEEEEESCGGGC-CCSSCEEEEEEE
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhh-------CCeEEEEccHHHc-CcCCcccEEEEh
Confidence            4567899999999999999999887  99999999999999998642       2799999999887 467899999999


Q ss_pred             chhccCCCHHHHHHHHH-HhcccCcEEEEEEeCC
Q 021975          245 AALHCWPSPSNAVAEIS-RILRSGGVFVGTTFLR  277 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~-r~LkpgG~lvi~~~~~  277 (304)
                      +++||++++..+++++. ++|||||++++.++..
T Consensus       111 ~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~  144 (250)
T 2p7i_A          111 HVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA  144 (250)
T ss_dssp             SCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             hHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence            99999999999999999 9999999999999765

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.78  E-value=1.3e-18  Score=152.61  Aligned_cols=115  Identities=23%  Similarity=0.268  Sum_probs=101.4

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++         .++.++++|+.+++
T Consensus        21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~---------~~~~~~~~d~~~~~   89 (261)
T 3ege_A           21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL--FVYAVEPSIVMRQQAVVH---------PQVEWFTGYAENLA   89 (261)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTC--EEEEECSCHHHHHSSCCC---------TTEEEECCCTTSCC
T ss_pred             HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCC--EEEEEeCCHHHHHHHHhc---------cCCEEEECchhhCC
Confidence            4456677777766788999999999999999998654  999999999999887652         38999999999999


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      +++++||+|++.++++|++++..+++++.++|| ||++++.++....
T Consensus        90 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~  135 (261)
T 3ege_A           90 LPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRL  135 (261)
T ss_dssp             SCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGG
T ss_pred             CCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCch
Confidence            989999999999999999999999999999999 9999999887543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.78  E-value=2.7e-18  Score=149.96  Aligned_cols=121  Identities=20%  Similarity=0.233  Sum_probs=96.0

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc---------C-c----cCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---------N-T----ILTS  219 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------~-~----~~~~  219 (304)
                      +.+.+.......++.+|||+|||+|..+..|++.|.  +|+|+|+|+.+++.|+++....         + .    ....
T Consensus        56 l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (252)
T 2gb4_A           56 LKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH--TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSG  133 (252)
T ss_dssp             HHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS
T ss_pred             HHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCC
Confidence            334444433334678999999999999999999987  9999999999999998765310         0 0    0125


Q ss_pred             CeEEEEccCCCCCCCC-CccceEEecchhccCCC--HHHHHHHHHHhcccCcEEEEEEeC
Q 021975          220 NLALVRADVCRLPFAS-GFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       220 ~i~~~~~d~~~lp~~~-~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ++.++++|+.++++.+ ++||+|++..+++|++.  ...+++++.++|||||++++.++.
T Consensus       134 ~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~  193 (252)
T 2gb4_A          134 SISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLS  193 (252)
T ss_dssp             SEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             ceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence            7999999999998764 89999999999999974  357899999999999999766543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.78  E-value=2.1e-18  Score=150.41  Aligned_cols=112  Identities=18%  Similarity=0.173  Sum_probs=99.4

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (304)
                      .+...+...++.+|||||||+|.++..+++..+..+++|+|+++.+++.++++        ..++.++.+|+..++ +++
T Consensus        24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~--------~~~~~~~~~d~~~~~-~~~   94 (259)
T 2p35_A           24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR--------LPNTNFGKADLATWK-PAQ   94 (259)
T ss_dssp             HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH--------STTSEEEECCTTTCC-CSS
T ss_pred             HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CCCcEEEECChhhcC-ccC
Confidence            44455555677899999999999999999985556999999999999999985        257899999999988 788


Q ss_pred             ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +||+|++..+++|++++..+++++.++|||||++++.++..
T Consensus        95 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A           95 KADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             CEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             CcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            99999999999999999999999999999999999998754

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.77  E-value=1.4e-18  Score=146.16  Aligned_cols=102  Identities=15%  Similarity=0.223  Sum_probs=94.5

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (304)
                      +.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++        ..++.++++|+.++++++++||+|++..+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVELARQT--------HPSVTFHHGTITDLSDSPKRWAGLLAWYS  111 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC--CEEEECCCHHHHHHHHHH--------CTTSEEECCCGGGGGGSCCCEEEEEEESS
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHh--------CCCCeEEeCcccccccCCCCeEEEEehhh
Confidence            77999999999999999999876  999999999999999985        25789999999999988899999999999


Q ss_pred             hccCC--CHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          247 LHCWP--SPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       247 l~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++|++  ++..+++++.++|||||++++.++...
T Consensus       112 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  145 (203)
T 3h2b_A          112 LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGP  145 (203)
T ss_dssp             STTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred             HhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence            99997  889999999999999999999997663

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.77  E-value=4.5e-18  Score=150.95  Aligned_cols=115  Identities=15%  Similarity=0.189  Sum_probs=101.5

Q ss_pred             HHHHhh-cccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          157 MAQEYF-KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       157 ~l~~~l-~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      .+.+.+ ...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.+++++...+    .++.++++|+.+++++
T Consensus        12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~~~   87 (284)
T 3gu3_A           12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP----YDSEFLEGDATEIELN   87 (284)
T ss_dssp             HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS----SEEEEEESCTTTCCCS
T ss_pred             HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC----CceEEEEcchhhcCcC
Confidence            344333 445678999999999999999999865 3699999999999999999987755    4899999999998874


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                       ++||+|++..+++|++++..+++++.++|||||++++.++.
T Consensus        88 -~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           88 -DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             -SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             -CCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence             69999999999999999999999999999999999999876

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.77  E-value=5.6e-18  Score=151.56  Aligned_cols=117  Identities=16%  Similarity=0.163  Sum_probs=102.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      +.+...+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|+++.+..+  ...++.++.+|+.++   +
T Consensus        62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~---~  135 (302)
T 3hem_A           62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD--SPRRKEVRIQGWEEF---D  135 (302)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSC--CSSCEEEEECCGGGC---C
T ss_pred             HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECCHHHc---C
Confidence            3455556666788999999999999999999832 499999999999999999998877  456899999999876   6


Q ss_pred             CccceEEecchhccCCCH---------HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          236 GFVDAVHAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~---------~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++||+|++..+++|++||         ..+++++.++|||||++++.++...
T Consensus       136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence            899999999999999887         6899999999999999999998764

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.77  E-value=3.4e-18  Score=145.52  Aligned_cols=110  Identities=18%  Similarity=0.264  Sum_probs=97.1

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCc
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (304)
                      +.+.+...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++..       .++.++.+|+.+++++ ++
T Consensus        37 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~d~~~~~~~-~~  106 (220)
T 3hnr_A           37 ILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR--TVYGIEPSREMRMIAKEKLP-------KEFSITEGDFLSFEVP-TS  106 (220)
T ss_dssp             HHHHHHHTCCSEEEEECCTTSHHHHHHHHTTC--EEEEECSCHHHHHHHHHHSC-------TTCCEESCCSSSCCCC-SC
T ss_pred             HHHHhhccCCCeEEEeCCCCCHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhCC-------CceEEEeCChhhcCCC-CC
Confidence            33444445678999999999999999999865  99999999999999998642       3789999999999887 89


Q ss_pred             cceEEecchhccCCCHHH--HHHHHHHhcccCcEEEEEEeCC
Q 021975          238 VDAVHAGAALHCWPSPSN--AVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~~~--~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ||+|++..+++|++++..  +++++.++|||||++++.++..
T Consensus       107 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          107 IDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             eEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            999999999999999987  9999999999999999998654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.77  E-value=6.1e-18  Score=147.64  Aligned_cols=104  Identities=22%  Similarity=0.348  Sum_probs=94.9

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      ..++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.+++++..    ...++.++.+|+.++++++++||+|++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~~  110 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGY--RYIALDADAAMLEVFRQKIAG----VDRKVQVVQADARAIPLPDESVHGVIV  110 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTC--EEEEEESCHHHHHHHHHHTTT----SCTTEEEEESCTTSCCSCTTCEEEEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhc----cCCceEEEEcccccCCCCCCCeeEEEE
Confidence            35678999999999999999998865  999999999999999998722    247899999999999988899999999


Q ss_pred             cchhccCCCHHHHHHHHHHhcccCcEEEEE
Q 021975          244 GAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~  273 (304)
                      ..+++|++++..+++++.++|||||++++.
T Consensus       111 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          111 VHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             ESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            999999999999999999999999999987

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.76  E-value=8.7e-18  Score=140.44  Aligned_cols=114  Identities=22%  Similarity=0.247  Sum_probs=99.8

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCc
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (304)
                      +.+.+...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++.+..+   ..++.++.+|+..+++ +++
T Consensus        24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~-~~~   97 (199)
T 2xvm_A           24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY--DVDAWDKNAMSIANVERIKSIEN---LDNLHTRVVDLNNLTF-DRQ   97 (199)
T ss_dssp             HHHHTTTSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECCGGGCCC-CCC
T ss_pred             HHHHhhccCCCeEEEEcCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhCC---CCCcEEEEcchhhCCC-CCC
Confidence            44445555678999999999999999999865  99999999999999999987765   2479999999998887 789


Q ss_pred             cceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          238 VDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       238 fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ||+|++..+++|++  ++..+++++.++|||||++++.++..
T Consensus        98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (199)
T 2xvm_A           98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMD  139 (199)
T ss_dssp             EEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             ceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeec
Confidence            99999999999998  78899999999999999988877654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.76  E-value=3.9e-18  Score=146.87  Aligned_cols=106  Identities=17%  Similarity=0.202  Sum_probs=94.4

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (304)
                      +.+|||||||+|.++..+++.+.  +|+|+|+++.+++.++++....+  ...++.++++|+.+++ ++++||+|++..+
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~  141 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMASPER--FVVGLDISESALAKANETYGSSP--KAEYFSFVKEDVFTWR-PTELFDLIFDYVF  141 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCBTTE--EEEEECSCHHHHHHHHHHHTTSG--GGGGEEEECCCTTTCC-CSSCEEEEEEESS
T ss_pred             CCCEEEeCCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHhhccC--CCcceEEEECchhcCC-CCCCeeEEEEChh
Confidence            45999999999999999988665  99999999999999999887644  3467999999999877 4569999999999


Q ss_pred             hccCC--CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          247 LHCWP--SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       247 l~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++|++  ++..+++++.++|||||+|++.++..
T Consensus       142 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  174 (235)
T 3lcc_A          142 FCAIEPEMRPAWAKSMYELLKPDGELITLMYPI  174 (235)
T ss_dssp             TTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             hhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence            99999  88899999999999999999988754

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.76  E-value=7.6e-18  Score=142.51  Aligned_cols=101  Identities=28%  Similarity=0.338  Sum_probs=91.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ++.+|||+|||+|.++..+   + ..+++|+|+++.+++.++++.        .++.++++|+.++++++++||+|++.+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~-~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~~~  103 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---P-YPQKVGVEPSEAMLAVGRRRA--------PEATWVRAWGEALPFPGESFDVVLLFT  103 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---C-CSEEEEECCCHHHHHHHHHHC--------TTSEEECCCTTSCCSCSSCEEEEEEES
T ss_pred             CCCeEEEECCCCCHhHHhC---C-CCeEEEEeCCHHHHHHHHHhC--------CCcEEEEcccccCCCCCCcEEEEEEcC
Confidence            6789999999999999887   2 238999999999999999863        468899999999998889999999999


Q ss_pred             hhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      +++|++++..+++++.++|||||++++.++...
T Consensus       104 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  136 (211)
T 2gs9_A          104 TLEFVEDVERVLLEARRVLRPGGALVVGVLEAL  136 (211)
T ss_dssp             CTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             hhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence            999999999999999999999999999998764

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.76  E-value=1e-17  Score=148.53  Aligned_cols=116  Identities=19%  Similarity=0.217  Sum_probs=100.7

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      +.+.+.+...++.+|||||||+|.++..+++. +.  +|+|+|+|+.+++.++++++..+  ...++.++.+|+.++|  
T Consensus        54 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvd~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~--  127 (287)
T 1kpg_A           54 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV--NVVGLTLSKNQANHVQQLVANSE--NLRSKRVLLAGWEQFD--  127 (287)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTCC--CCSCEEEEESCGGGCC--
T ss_pred             HHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCC--
Confidence            34555556667889999999999999999955 54  99999999999999999988776  3568999999998765  


Q ss_pred             CCccceEEecchhccC--CCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          235 SGFVDAVHAGAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~--~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                       ++||+|++..+++|+  .++..+++++.++|||||++++.++...
T Consensus       128 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  172 (287)
T 1kpg_A          128 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL  172 (287)
T ss_dssp             -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             -CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence             789999999999999  6889999999999999999999987753

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.76  E-value=2.6e-18  Score=151.91  Aligned_cols=109  Identities=28%  Similarity=0.449  Sum_probs=96.7

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCc
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (304)
                      +.+.+...++.+|||||||+|.++..+++.+  .+|+|+|+|+.+++.++++.        .++.++.+|+..+++ +++
T Consensus        49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~~  117 (279)
T 3ccf_A           49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKARQNY--------PHLHFDVADARNFRV-DKP  117 (279)
T ss_dssp             HHHHHCCCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHC--------TTSCEEECCTTTCCC-SSC
T ss_pred             HHHHhCCCCCCEEEEecCCCCHHHHHHHhCC--CeEEEEECCHHHHHHHHhhC--------CCCEEEECChhhCCc-CCC
Confidence            4455555678899999999999999999854  49999999999999998853        568899999999887 579


Q ss_pred             cceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ||+|++..+++|++|+..+++++.++|||||++++.++..
T Consensus       118 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          118 LDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             cCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            9999999999999999999999999999999999988764

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.76  E-value=3.4e-18  Score=146.59  Aligned_cols=110  Identities=21%  Similarity=0.340  Sum_probs=98.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc--CCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      ++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++....+..  ...++.++.+|+..+++++++||+|++
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGY--SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            478999999999999999999865  9999999999999999988765520  023689999999999988999999999


Q ss_pred             cchhccCCCHH---HHHHHHHHhcccCcEEEEEEeCC
Q 021975          244 GAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       244 ~~vl~h~~d~~---~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..+++|++++.   .+++++.++|||||++++.++..
T Consensus       108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (235)
T 3sm3_A          108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ  144 (235)
T ss_dssp             ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence            99999999998   89999999999999999998865

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.76  E-value=8.4e-18  Score=149.46  Aligned_cols=125  Identities=21%  Similarity=0.207  Sum_probs=105.6

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc-CCCCeEEEEccCC
Q 021975          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVC  229 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-~~~~i~~~~~d~~  229 (304)
                      .....+.+...+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|+++....+.. ...++.+..+|+.
T Consensus        42 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~  119 (293)
T 3thr_A           42 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL  119 (293)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG
T ss_pred             HHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh
Confidence            345556777777766788999999999999999999976  9999999999999999876433210 1246889999998


Q ss_pred             CCC---CCCCccceEEec-chhccCCC-------HHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          230 RLP---FASGFVDAVHAG-AALHCWPS-------PSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       230 ~lp---~~~~~fD~V~~~-~vl~h~~d-------~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .++   +++++||+|++. .+++|+++       +..+++++.++|||||++++.++..
T Consensus       120 ~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  178 (293)
T 3thr_A          120 TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY  178 (293)
T ss_dssp             GHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             hCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence            877   778999999998 89999999       8999999999999999999988653

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.75  E-value=9.3e-18  Score=141.57  Aligned_cols=108  Identities=20%  Similarity=0.347  Sum_probs=94.4

Q ss_pred             cCCCeEEEEcCCccHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          165 AQGGLLVDVSCGSGLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~-~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      .++.+|||+|||+|.+ ...++..+.  +++|+|+|+.+++.++++....+    .++.++++|+.++++++++||+|++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~   95 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGY--KTYGIEISDLQLKKAENFSRENN----FKLNISKGDIRKLPFKDESMSFVYS   95 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTC--EEEEEECCHHHHHHHHHHHHHHT----CCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcC----CceEEEECchhhCCCCCCceeEEEE
Confidence            4578999999999997 455555554  99999999999999999887654    5789999999999988899999999


Q ss_pred             cchhccC--CCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          244 GAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       244 ~~vl~h~--~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ..+++|+  .++..+++++.++|||||++++.++...
T Consensus        96 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  132 (209)
T 2p8j_A           96 YGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTK  132 (209)
T ss_dssp             CSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred             cChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence            9999999  5778999999999999999999998753

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.75  E-value=1.2e-17  Score=144.19  Aligned_cols=114  Identities=27%  Similarity=0.352  Sum_probs=100.2

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      ..+...+...++.+|||||||+|.++..+++.+. .+++|+|+++.+++.++++...      .++.++++|+..+++++
T Consensus        33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~~  105 (243)
T 3bkw_A           33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPD------TGITYERADLDKLHLPQ  105 (243)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCS------SSEEEEECCGGGCCCCT
T ss_pred             HHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhccc------CCceEEEcChhhccCCC
Confidence            3455666666788999999999999999998853 4899999999999999986532      36899999999888888


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ++||+|++..+++|++++..+++++.++|||||++++.++.
T Consensus       106 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  146 (243)
T 3bkw_A          106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEH  146 (243)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCC
Confidence            99999999999999999999999999999999999998865

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.75  E-value=1.3e-17  Score=141.35  Aligned_cols=110  Identities=20%  Similarity=0.228  Sum_probs=96.4

Q ss_pred             HHHhhc-ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975          158 AQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (304)
Q Consensus       158 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (304)
                      +...+. ..++.+|||||||+|.++..+++.+.  +++|+|+++.+++.+++    .   ...++.++++|+.++ ++++
T Consensus        37 ~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~----~---~~~~~~~~~~d~~~~-~~~~  106 (218)
T 3ou2_A           37 ALERLRAGNIRGDVLELASGTGYWTRHLSGLAD--RVTALDGSAEMIAEAGR----H---GLDNVEFRQQDLFDW-TPDR  106 (218)
T ss_dssp             HHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHGG----G---CCTTEEEEECCTTSC-CCSS
T ss_pred             HHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHh----c---CCCCeEEEecccccC-CCCC
Confidence            344443 44567999999999999999999965  99999999999999988    2   236899999999887 6789


Q ss_pred             ccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          237 FVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +||+|++..+++|++++  ..+++++.++|||||++++.++..
T Consensus       107 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          107 QWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             ceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            99999999999999987  789999999999999999999876

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.74  E-value=1.5e-17  Score=142.04  Aligned_cols=114  Identities=26%  Similarity=0.389  Sum_probs=98.6

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      +.+...+..  +.+|||+|||+|.++..+++.++  +++|+|+++.+++.++++.+..+    .++.++++|+.++++++
T Consensus        30 ~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~  101 (227)
T 1ve3_A           30 PLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLSFED  101 (227)
T ss_dssp             HHHHHSCCS--CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCTTSCCSCT
T ss_pred             HHHHHhcCC--CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC----CCceEEECchhcCCCCC
Confidence            344444433  77999999999999999999987  99999999999999999887654    68999999999988888


Q ss_pred             CccceEEecch--hccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAA--LHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~v--l~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++||+|++..+  ++|..++..+++++.++|||||++++.++..
T Consensus       102 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  145 (227)
T 1ve3_A          102 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL  145 (227)
T ss_dssp             TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence            89999999999  5555677899999999999999999998763

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.74  E-value=2.5e-17  Score=145.75  Aligned_cols=139  Identities=12%  Similarity=0.031  Sum_probs=107.5

Q ss_pred             hhhHHHHHhHHHhhhcC--------CCCCcHH---HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeC
Q 021975          130 FVSFLYERGWRQNFNRS--------GFPGPDE---EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF  198 (304)
Q Consensus       130 ~~s~~~~~~w~~~~~~~--------~~~~~~~---~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~  198 (304)
                      .....++..|.+.+...        .++..+.   +.+.....+...++.+|||||||+|.++..+..+.++++|+|+|+
T Consensus        75 ~~~~~~E~~wa~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDi  154 (298)
T 3fpf_A           75 NLGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEI  154 (298)
T ss_dssp             HHHHHHHHHHHHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEES
T ss_pred             HHHHHHHHHHHHHHhccCChHHhhccCCCcccHHHHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEEC
Confidence            34456788888877332        2333333   222222345567889999999999987655444434569999999


Q ss_pred             CHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          199 SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       199 s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ++.+++.|+++++..+  . .++.++++|+.+++  +++||+|++...   ++++..+++++.++|||||+|++....
T Consensus       155 s~~~l~~Ar~~~~~~g--l-~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          155 EPDIAELSRKVIEGLG--V-DGVNVITGDETVID--GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             SHHHHHHHHHHHHHHT--C-CSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CHHHHHHHHHHHHhcC--C-CCeEEEECchhhCC--CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            9999999999998877  3 78999999998876  789999998654   578999999999999999999998754

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.74  E-value=4.3e-18  Score=139.14  Aligned_cols=105  Identities=16%  Similarity=0.317  Sum_probs=94.6

Q ss_pred             hhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccce
Q 021975          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (304)
                      .+...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++        ..++.++.+|   +++++++||+
T Consensus        12 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~v~~~~~d---~~~~~~~~D~   78 (170)
T 3i9f_A           12 NIFEGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK--------FDSVITLSDP---KEIPDNSVDF   78 (170)
T ss_dssp             HHHSSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH--------CTTSEEESSG---GGSCTTCEEE
T ss_pred             hcCcCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh--------CCCcEEEeCC---CCCCCCceEE
Confidence            34455678999999999999999999885  999999999999999986        2578999999   6777899999


Q ss_pred             EEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      |++..+++|++++..+++++.++|||||++++.++...
T Consensus        79 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  116 (170)
T 3i9f_A           79 ILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE  116 (170)
T ss_dssp             EEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             EEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence            99999999999999999999999999999999998764

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.74  E-value=2.8e-17  Score=148.02  Aligned_cols=116  Identities=16%  Similarity=0.246  Sum_probs=101.5

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      +.+.+.+...++.+|||||||+|.++..+++. +.  +|+|+|+|+.+++.++++.+..+  ...++.++.+|+.+++  
T Consensus        80 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~--  153 (318)
T 2fk8_A           80 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSKNQHARCEQVLASID--TNRSRQVLLQGWEDFA--  153 (318)
T ss_dssp             HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCGGGCC--
T ss_pred             HHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChHHCC--
Confidence            44555556667889999999999999999988 54  99999999999999999988776  3467999999998775  


Q ss_pred             CCccceEEecchhccC--CCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          235 SGFVDAVHAGAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~--~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                       ++||+|++..+++|+  .++..+++++.++|||||++++.++...
T Consensus       154 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  198 (318)
T 2fk8_A          154 -EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY  198 (318)
T ss_dssp             -CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             -CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence             789999999999999  5788999999999999999999998764

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.74  E-value=1.2e-17  Score=144.53  Aligned_cols=108  Identities=12%  Similarity=0.167  Sum_probs=96.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ++.+|||||||+|.++..+++.+ ..+++|+|+++.+++.+++++...+   ..++.++.+|+..+++++++||+|++..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~  154 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPEPDSYDVIWIQW  154 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC---CceEEEEEcChhhcCCCCCCEEEEEEcc
Confidence            57899999999999999998886 4599999999999999999887653   2568999999998888888999999999


Q ss_pred             hhccCCCHH--HHHHHHHHhcccCcEEEEEEeCC
Q 021975          246 ALHCWPSPS--NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       246 vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++|++++.  .+++++.++|||||++++.++..
T Consensus       155 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  188 (241)
T 2ex4_A          155 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  188 (241)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence            999999865  89999999999999999988754

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.74  E-value=2.2e-17  Score=139.51  Aligned_cols=117  Identities=21%  Similarity=0.293  Sum_probs=99.2

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      ...+.+...+  .++.+|||+|||+|.++..+++.++. +++|+|+++.+++.++++...     ..++.++.+|+..++
T Consensus        31 ~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~-----~~~i~~~~~d~~~~~  102 (215)
T 2pxx_A           31 SFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH-----VPQLRWETMDVRKLD  102 (215)
T ss_dssp             HHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT-----CTTCEEEECCTTSCC
T ss_pred             HHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc-----CCCcEEEEcchhcCC
Confidence            3444454444  45789999999999999999998743 899999999999999997653     257999999999988


Q ss_pred             CCCCccceEEecchhccCC---------------CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 FASGFVDAVHAGAALHCWP---------------SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~---------------d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++++||+|++..+++|+.               ++..+++++.++|||||++++.++..
T Consensus       103 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          103 FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             SCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            8889999999999987765               56789999999999999999999876

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.74  E-value=1.6e-17  Score=153.69  Aligned_cols=114  Identities=22%  Similarity=0.318  Sum_probs=100.0

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhc-----CccCCCCeEEEEccCCCC------
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-----NTILTSNLALVRADVCRL------  231 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~-----~~~~~~~i~~~~~d~~~l------  231 (304)
                      ..++.+|||||||+|.++..+++. ++..+|+|+|+|+.+++.|+++++..     +.....++.++++|+.++      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            446789999999999999999887 35679999999999999999987643     200236899999999987      


Q ss_pred             CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++++++||+|++..+++|++++..+++++.++|||||+|++.++..
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            8889999999999999999999999999999999999999988665

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.74  E-value=9.3e-18  Score=149.52  Aligned_cols=111  Identities=9%  Similarity=0.032  Sum_probs=86.8

Q ss_pred             cCCCeEEEEcCCccHHHH----HHHHhCCCCeE--EEEeCCHHHHHHHHHHHHhcCccCCCCe--EEEEccCCCCC----
Q 021975          165 AQGGLLVDVSCGSGLFSR----KFAKSGTYSGV--VALDFSENMLRQCYDFIKQDNTILTSNL--ALVRADVCRLP----  232 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~----~l~~~~~~~~v--~giD~s~~~~~~a~~~~~~~~~~~~~~i--~~~~~d~~~lp----  232 (304)
                      .++.+|||||||+|.++.    .+...++...+  +|+|+|+.|++.|+++++...  ...++  .+..+++++++    
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~  128 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS--NLENVKFAWHKETSSEYQSRML  128 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS--SCTTEEEEEECSCHHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc--CCCcceEEEEecchhhhhhhhc
Confidence            356789999999997654    34444455544  999999999999999886532  12344  44555655443    


Q ss_pred             --CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                        +++++||+|++.+++||++|+..+|++++++|||||+|++.....
T Consensus       129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence              567899999999999999999999999999999999999987654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.74  E-value=3.2e-17  Score=144.28  Aligned_cols=120  Identities=17%  Similarity=0.215  Sum_probs=102.4

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHH------HHHHHHHHHHhcCccCCCCeEEEEcc--
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSEN------MLRQCYDFIKQDNTILTSNLALVRAD--  227 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~------~~~~a~~~~~~~~~~~~~~i~~~~~d--  227 (304)
                      .+.+.+...++.+|||||||+|.++..+++. ++..+|+|+|+|+.      +++.++++++..+  ...++.++.+|  
T Consensus        34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~  111 (275)
T 3bkx_A           34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP--LGDRLTVHFNTNL  111 (275)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST--TGGGEEEECSCCT
T ss_pred             HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC--CCCceEEEECChh
Confidence            4455556667889999999999999999988 55579999999997      9999999988765  34689999998  


Q ss_pred             -CCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          228 -VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       228 -~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                       ...+|+++++||+|++..+++|++++..+++.+.++++|||++++.++...
T Consensus       112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~  163 (275)
T 3bkx_A          112 SDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQ  163 (275)
T ss_dssp             TTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred             hhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence             456677789999999999999999999988888888888999999998764

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.74  E-value=9.7e-18  Score=145.71  Aligned_cols=114  Identities=10%  Similarity=0.023  Sum_probs=98.2

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCc
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (304)
                      +...+...++.+|||||||+|.++..+++.+ ..+++|+|+++.+++.++++....     .++.++++|+..+++++++
T Consensus        85 ~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~~~~  158 (254)
T 1xtp_A           85 FIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETATLPPNT  158 (254)
T ss_dssp             HHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCCCCSSC
T ss_pred             HHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC-----CceEEEEccHHHCCCCCCC
Confidence            3334444567899999999999999999886 458999999999999999976532     5799999999998888899


Q ss_pred             cceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          238 VDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       238 fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ||+|++..+++|++  ++..+++++.++|||||++++.++..
T Consensus       159 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  200 (254)
T 1xtp_A          159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS  200 (254)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             eEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            99999999999995  47899999999999999999998643

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.74  E-value=1.3e-16  Score=134.51  Aligned_cols=121  Identities=19%  Similarity=0.103  Sum_probs=103.5

Q ss_pred             CcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC
Q 021975          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (304)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (304)
                      ...+....+...+...++.+|||+|||+|.++..+++.++..+++|+|+++.+++.++++++..+   ..++.++.+|+.
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~  100 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV---ARNVTLVEAFAP  100 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT---CTTEEEEECCTT
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEeCChh
Confidence            34455566777777778899999999999999999999877799999999999999999998876   268999999996


Q ss_pred             CCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +......+||+|++..+++   ++..+++++.++|||||++++.+..
T Consensus       101 ~~~~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          101 EGLDDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             TTCTTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             hhhhcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecc
Confidence            6543347899999988775   7889999999999999999998765

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.73  E-value=1.5e-17  Score=143.53  Aligned_cols=118  Identities=17%  Similarity=0.197  Sum_probs=100.4

Q ss_pred             HHHHHHHHhhccc--CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          153 EEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       153 ~~~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      ...+.+.+.+...  ++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++....+    .++.++++|+..
T Consensus        22 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~   95 (246)
T 1y8c_A           22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQG----LKPRLACQDISN   95 (246)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTT----CCCEEECCCGGG
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC--cEEEEECCHHHHHHHHHHHhhcC----CCeEEEeccccc
Confidence            3444555555443  678999999999999999999876  99999999999999999887755    379999999998


Q ss_pred             CCCCCCccceEEecc-hhccC---CCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          231 LPFASGFVDAVHAGA-ALHCW---PSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       231 lp~~~~~fD~V~~~~-vl~h~---~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++++ ++||+|++.. +++|+   .++..+++++.++|||||++++.++..
T Consensus        96 ~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (246)
T 1y8c_A           96 LNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             CCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             CCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence            8876 8899999998 99999   466789999999999999999977643

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.73  E-value=8.8e-18  Score=145.22  Aligned_cols=112  Identities=14%  Similarity=0.245  Sum_probs=95.5

Q ss_pred             HHHHHHHHhhcc-cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          153 EEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       153 ~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ...+.+..++.. .++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.+++           ++.++.+|+.+.
T Consensus        27 ~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~-----------~~~~~~~d~~~~   93 (240)
T 3dli_A           27 LVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGI--ESIGVDINEDMIKFCEG-----------KFNVVKSDAIEY   93 (240)
T ss_dssp             HHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTC--CEEEECSCHHHHHHHHT-----------TSEEECSCHHHH
T ss_pred             HHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCC--cEEEEECCHHHHHHHHh-----------hcceeeccHHHH
Confidence            344445444442 3568999999999999999999876  89999999999999987           278889998775


Q ss_pred             --CCCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          232 --PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       232 --p~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                        ++++++||+|++..+++|++++  ..+++++.++|||||++++.++..
T Consensus        94 ~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  143 (240)
T 3dli_A           94 LKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNP  143 (240)
T ss_dssp             HHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred             hhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence              7788999999999999999965  899999999999999999999865

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.73  E-value=2e-17  Score=148.28  Aligned_cols=111  Identities=16%  Similarity=0.193  Sum_probs=98.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          165 AQGGLLVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      .++.+|||||||+|.++..++ ...+..+|+|+|+++.+++.++++++..+  ...++.++++|+.+++++ ++||+|++
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~-~~fD~v~~  193 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA--LAGQITLHRQDAWKLDTR-EGYDLLTS  193 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST--TGGGEEEEECCGGGCCCC-SCEEEEEC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECchhcCCcc-CCeEEEEE
Confidence            457899999999999999986 44556799999999999999999998776  345699999999999887 89999999


Q ss_pred             cchhccCCCHHH---HHHHHHHhcccCcEEEEEEeCCC
Q 021975          244 GAALHCWPSPSN---AVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       244 ~~vl~h~~d~~~---~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ..+++|++++..   +++++.++|||||++++.++...
T Consensus       194 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  231 (305)
T 3ocj_A          194 NGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPP  231 (305)
T ss_dssp             CSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCC
T ss_pred             CChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence            999999999986   79999999999999999887653

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.72  E-value=5e-17  Score=144.11  Aligned_cols=110  Identities=15%  Similarity=0.162  Sum_probs=96.7

Q ss_pred             hhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccce
Q 021975          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (304)
                      .+...++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.++++....+    .++.++++|+..+++ +++||+
T Consensus       115 ~~~~~~~~~vLD~GcG~G~~~~~l~~~g~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~-~~~fD~  187 (286)
T 3m70_A          115 AAKIISPCKVLDLGCGQGRNSLYLSLLGY--DVTSWDHNENSIAFLNETKEKEN----LNISTALYDINAANI-QENYDF  187 (286)
T ss_dssp             HHHHSCSCEEEEESCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCGGGCCC-CSCEEE
T ss_pred             HhhccCCCcEEEECCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHcC----CceEEEEeccccccc-cCCccE
Confidence            33334678999999999999999999976  99999999999999999998876    389999999998877 789999


Q ss_pred             EEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          241 VHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       241 V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      |++..+++|++++  ..+++++.++|||||++++.....
T Consensus       188 i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  226 (286)
T 3m70_A          188 IVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMS  226 (286)
T ss_dssp             EEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             EEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            9999999999654  489999999999999988877654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.72  E-value=3.8e-17  Score=143.07  Aligned_cols=102  Identities=22%  Similarity=0.263  Sum_probs=90.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.|+++.        .++.++++|+.++++ +++||+|++..
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~~fD~v~~~~  118 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRN--------PDAVLHHGDMRDFSL-GRRFSAVTCMF  118 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHC--------TTSEEEECCTTTCCC-SCCEEEEEECT
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCEEEECChHHCCc-cCCcCEEEEcC
Confidence            467999999999999999999876  9999999999999999853        478999999999887 78999999998


Q ss_pred             -hhccCC---CHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          246 -ALHCWP---SPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       246 -vl~h~~---d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                       +++|++   +...+++++.++|||||+|++.++..+
T Consensus       119 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  155 (263)
T 3pfg_A          119 SSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFP  155 (263)
T ss_dssp             TGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred             chhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccCh
Confidence             999997   455789999999999999999866543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.72  E-value=5.9e-17  Score=133.06  Aligned_cols=119  Identities=17%  Similarity=0.189  Sum_probs=97.3

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-  230 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-  230 (304)
                      .+....+...+...++.+|||+|||+|.++..+++..+..+++|+|+++.+++.++++++..+  ...++ ++.+|... 
T Consensus        11 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~-~~~~d~~~~   87 (178)
T 3hm2_A           11 QHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG--VSDRI-AVQQGAPRA   87 (178)
T ss_dssp             HHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTT--CTTSE-EEECCTTGG
T ss_pred             HHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhC--CCCCE-EEecchHhh
Confidence            334455666666667889999999999999999998666799999999999999999998876  33478 88888754 


Q ss_pred             CCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++...++||+|++..+++|    ..+++++.++|||||++++.+...
T Consensus        88 ~~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~  130 (178)
T 3hm2_A           88 FDDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTV  130 (178)
T ss_dssp             GGGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred             hhccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecc
Confidence            3332378999999999988    678999999999999999988654

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.72  E-value=9.2e-18  Score=141.04  Aligned_cols=104  Identities=17%  Similarity=0.215  Sum_probs=91.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ++ +|||||||+|.++..+++.+.  +++|+|+++.+++.++++....+    .++.++++|+..+++++++||+|++..
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~  102 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGY--EVTAVDQSSVGLAKAKQLAQEKG----VKITTVQSNLADFDIVADAWEGIVSIF  102 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHT----CCEEEECCBTTTBSCCTTTCSEEEEEC
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcC----CceEEEEcChhhcCCCcCCccEEEEEh
Confidence            35 999999999999999998865  99999999999999999987765    489999999999988889999999964


Q ss_pred             hhccC--CCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          246 ALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       246 vl~h~--~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                        .|+  .++..+++++.++|||||++++.++...
T Consensus       103 --~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  135 (202)
T 2kw5_A          103 --CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE  135 (202)
T ss_dssp             --CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred             --hcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence              444  3667899999999999999999998753

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.71  E-value=4.2e-17  Score=138.01  Aligned_cols=101  Identities=24%  Similarity=0.284  Sum_probs=91.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++.         ++.++.+|+..++ .+++||+|++..
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~---------~~~~~~~d~~~~~-~~~~fD~v~~~~  110 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGF--DVDATDGSPELAAEASRRL---------GRPVRTMLFHQLD-AIDAYDAVWAHA  110 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH---------TSCCEECCGGGCC-CCSCEEEEEECS
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCC--eEEEECCCHHHHHHHHHhc---------CCceEEeeeccCC-CCCcEEEEEecC
Confidence            478999999999999999999865  9999999999999999864         4567889998888 688999999999


Q ss_pred             hhccCC--CHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          246 ALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       246 vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      +++|++  ++..+++++.++|||||++++..+...
T Consensus       111 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  145 (211)
T 3e23_A          111 CLLHVPRDELADVLKLIWRALKPGGLFYASYKSGE  145 (211)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCS
T ss_pred             chhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCC
Confidence            999998  778999999999999999999987653

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.71  E-value=9.7e-17  Score=140.42  Aligned_cols=109  Identities=28%  Similarity=0.373  Sum_probs=93.7

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      +.+...+.  ++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++..        . .++.+|+..+++++
T Consensus        46 ~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~--------~-~~~~~d~~~~~~~~  112 (260)
T 2avn_A           46 SFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV--------K-NVVEAKAEDLPFPS  112 (260)
T ss_dssp             HHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC--------S-CEEECCTTSCCSCT
T ss_pred             HHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC--eEEEEeCCHHHHHHHHhhcC--------C-CEEECcHHHCCCCC
Confidence            34444443  578999999999999999999865  99999999999999998642        1 28899999999888


Q ss_pred             CccceEEecchhccC-CCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAALHCW-PSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~-~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++||+|++..+++|+ +++..+++++.++|||||++++.++..
T Consensus       113 ~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  155 (260)
T 2avn_A          113 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF  155 (260)
T ss_dssp             TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             CCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence            999999999877766 789999999999999999999998765

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.70  E-value=6.8e-17  Score=144.29  Aligned_cols=122  Identities=16%  Similarity=0.225  Sum_probs=98.8

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      .....+...+... +.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|+++....+.....++.++++|+.+++
T Consensus        70 ~~~~~~~~~~~~~-~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  146 (299)
T 3g2m_A           70 SEAREFATRTGPV-SGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA  146 (299)
T ss_dssp             HHHHHHHHHHCCC-CSCEEEETCTTTTTHHHHHTTTC--CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred             HHHHHHHHhhCCC-CCcEEEEeccCCHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence            3445555555543 44999999999999999999875  99999999999999999987654111157999999999988


Q ss_pred             CCCCccceEEec-chhccCC--CHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          233 FASGFVDAVHAG-AALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       233 ~~~~~fD~V~~~-~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      + +++||+|++. .+++|++  +...+++++.++|||||+|++.++...
T Consensus       147 ~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  194 (299)
T 3g2m_A          147 L-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE  194 (299)
T ss_dssp             C-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred             c-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence            7 6899988865 6677665  347899999999999999999998763

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.70  E-value=1.1e-16  Score=142.12  Aligned_cols=110  Identities=21%  Similarity=0.257  Sum_probs=96.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC-CCCccceEEe
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHA  243 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~  243 (304)
                      .++.+|||||||+|.++..+++.+ ..+++|+|+++.+++.|+++....+  ...++.++++|+..+++ ++++||+|++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~v~~  139 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMK--RRFKVFFRAQDSYGRHMDLGKEFDVISS  139 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSC--CSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CCccEEEEECCccccccCCCCCcCEEEE
Confidence            457899999999999999988875 4599999999999999999988765  33579999999999887 5789999999


Q ss_pred             cchhcc----CCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          244 GAALHC----WPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       244 ~~vl~h----~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..++||    ..++..+++++.++|||||++++.++..
T Consensus       140 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  177 (298)
T 1ri5_A          140 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR  177 (298)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            999977    4567889999999999999999998764

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.70  E-value=5.6e-16  Score=130.95  Aligned_cols=118  Identities=16%  Similarity=0.176  Sum_probs=97.3

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      ..+....+...+...++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.|+++++..+  ...++.++.+|+.+
T Consensus        40 ~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~  115 (204)
T 3njr_A           40 KSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGG--RAITIEPRADRIENIQKNIDTYG--LSPRMRAVQGTAPA  115 (204)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCTTG
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHcC--CCCCEEEEeCchhh
Confidence            344445666677777788999999999999999999844  99999999999999999998877  23489999999987


Q ss_pred             CCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .......||+|++..++    ++. +++++.++|||||++++.+...
T Consensus       116 ~~~~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~  157 (204)
T 3njr_A          116 ALADLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTL  157 (204)
T ss_dssp             GGTTSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred             hcccCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCc
Confidence            33234579999987744    566 9999999999999999988653

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.70  E-value=7.4e-17  Score=144.51  Aligned_cols=111  Identities=15%  Similarity=0.166  Sum_probs=87.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccC---CCCeEEEEccC------CCC--CCC
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL---TSNLALVRADV------CRL--PFA  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~---~~~i~~~~~d~------~~l--p~~  234 (304)
                      ++.+|||||||+|..+..++..+ ..+|+|+|+|+.|++.|+++....+...   ..++.+.+.|+      .++  +++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            46799999999998776666554 3499999999999999999886654100   01367888887      222  355


Q ss_pred             CCccceEEecchhccC---CCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALHCW---PSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~---~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++||+|+|.+++||+   .+...+++++.++|||||+|++.++..
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~  172 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG  172 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            7899999999999886   355789999999999999999999865

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.70  E-value=4.3e-17  Score=145.34  Aligned_cols=109  Identities=19%  Similarity=0.218  Sum_probs=90.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc-----------------------------
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-----------------------------  216 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-----------------------------  216 (304)
                      ++.+|||||||+|.++..+++..+..+|+|+|+++.+++.|+++++..+..                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            578999999999999999999966679999999999999999986643310                             


Q ss_pred             --------------------------CCCCeEEEEccCCCCC-----CCCCccceEEecchhccCC------CHHHHHHH
Q 021975          217 --------------------------LTSNLALVRADVCRLP-----FASGFVDAVHAGAALHCWP------SPSNAVAE  259 (304)
Q Consensus       217 --------------------------~~~~i~~~~~d~~~lp-----~~~~~fD~V~~~~vl~h~~------d~~~~l~~  259 (304)
                                                ...++.|+++|+...+     +.+++||+|++..+++|+.      ++..++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                      0147999999997654     5678999999999998875      67789999


Q ss_pred             HHHhcccCcEEEEEE
Q 021975          260 ISRILRSGGVFVGTT  274 (304)
Q Consensus       260 ~~r~LkpgG~lvi~~  274 (304)
                      +.++|||||+|++..
T Consensus       206 ~~~~LkpGG~lil~~  220 (292)
T 3g07_A          206 IYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHEEEEEEEEEEC
T ss_pred             HHHHhCCCcEEEEec
Confidence            999999999999864

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.70  E-value=1.2e-16  Score=133.19  Aligned_cols=123  Identities=19%  Similarity=0.131  Sum_probs=100.1

Q ss_pred             HHHHHHHHHhhcc---cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975          152 DEEFKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (304)
Q Consensus       152 ~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (304)
                      +...+.+.+.+..   .++.+|||+|||+|.++..++..+ ..+|+|+|+++.+++.++++++..+  . .++.++++|+
T Consensus        27 ~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~v~~~~~d~  102 (189)
T 3p9n_A           27 DRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRG-AASVLFVESDQRSAAVIARNIEALG--L-SGATLRRGAV  102 (189)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEECCHHHHHHHHHHHHHHT--C-SCEEEEESCH
T ss_pred             HHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcC--C-CceEEEEccH
Confidence            3344444444432   467899999999999999887765 4589999999999999999998876  2 6899999999


Q ss_pred             CCCC--CCCCccceEEecchhccC-CCHHHHHHHHHH--hcccCcEEEEEEeCCC
Q 021975          229 CRLP--FASGFVDAVHAGAALHCW-PSPSNAVAEISR--ILRSGGVFVGTTFLRY  278 (304)
Q Consensus       229 ~~lp--~~~~~fD~V~~~~vl~h~-~d~~~~l~~~~r--~LkpgG~lvi~~~~~~  278 (304)
                      .+++  +++++||+|++...+++. .+...+++++.+  +|||||++++......
T Consensus       103 ~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          103 AAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             HHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             HHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            7753  446899999999887775 677889999999  9999999999887653

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.70  E-value=2e-16  Score=155.27  Aligned_cols=124  Identities=12%  Similarity=0.149  Sum_probs=104.9

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCc---cCCCCeEEEEccC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNT---ILTSNLALVRADV  228 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~---~~~~~i~~~~~d~  228 (304)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+ +..+|+|+|+++.+++.|++++.....   ....++.++++|+
T Consensus       708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa  787 (950)
T 3htx_A          708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI  787 (950)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred             HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence            345566677776678899999999999999999987 446999999999999999997764310   0235799999999


Q ss_pred             CCCCCCCCccceEEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEeCC
Q 021975          229 CRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .++++.+++||+|++..+++|++++.  .+++++.++|||| .+++.++..
T Consensus       788 ~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          788 LEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             TSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             HhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence            99999889999999999999999877  5899999999999 888888765

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.69  E-value=3.9e-16  Score=137.93  Aligned_cols=107  Identities=17%  Similarity=0.141  Sum_probs=92.5

Q ss_pred             CCCeEEEEcCCc---cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----------
Q 021975          166 QGGLLVDVSCGS---GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (304)
Q Consensus       166 ~~~~vLDiGcG~---G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (304)
                      ...+|||||||+   |.++..+.+..+..+|+|+|+|+.|++.|++++..     ..++.++++|+.+.+          
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-----~~~v~~~~~D~~~~~~~~~~~~~~~  151 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-----DPNTAVFTADVRDPEYILNHPDVRR  151 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-----CTTEEEEECCTTCHHHHHHSHHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-----CCCeEEEEeeCCCchhhhccchhhc
Confidence            347999999999   99888887777777999999999999999998743     257999999997631          


Q ss_pred             -CCCCccceEEecchhccCCC--HHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 -FASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                       ++..+||+|++..+|||+++  +..+++++.++|||||+|++.++..
T Consensus       152 ~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          152 MIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             HCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             cCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence             22348999999999999997  8899999999999999999999875

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.69  E-value=1.6e-16  Score=135.57  Aligned_cols=107  Identities=17%  Similarity=0.260  Sum_probs=93.0

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC--CCCCC
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFAS  235 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~  235 (304)
                      +.+.+. .++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.++++          ...++.+|+.+  .++++
T Consensus        25 l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~~~~~~~~~~~~----------~~~~~~~d~~~~~~~~~~   91 (230)
T 3cc8_A           25 LLKHIK-KEWKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQAKEK----------LDHVVLGDIETMDMPYEE   91 (230)
T ss_dssp             HHTTCC-TTCSEEEEETCTTSHHHHHHHTTT--CEEEEEESSHHHHHHHHTT----------SSEEEESCTTTCCCCSCT
T ss_pred             HHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHh----------CCcEEEcchhhcCCCCCC
Confidence            444444 467899999999999999999885  5999999999999999873          23688999876  66778


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++||+|++..+++|++++..+++++.++|||||++++.++..
T Consensus        92 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  133 (230)
T 3cc8_A           92 EQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNV  133 (230)
T ss_dssp             TCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred             CccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            899999999999999999999999999999999999998764

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.69  E-value=3.9e-17  Score=141.20  Aligned_cols=105  Identities=12%  Similarity=0.221  Sum_probs=90.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCCCccceEE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH  242 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~  242 (304)
                      .++++|||||||+|..+..+++..+ .+++|||+++.+++.|+++.+..+    .++.++.+|+..+  ++++++||.|+
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~FD~i~  133 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQT----HKVIPLKGLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCS----SEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCC----CceEEEeehHHhhcccccccCCceEE
Confidence            4688999999999999999988764 489999999999999999888765    6788999887653  47788999997


Q ss_pred             e-----cchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          243 A-----GAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       243 ~-----~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      .     ..+++|++++..+++++.|+|||||+|++..
T Consensus       134 ~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          134 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            4     5678889999999999999999999998764

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.68  E-value=2.5e-16  Score=135.74  Aligned_cols=113  Identities=21%  Similarity=0.294  Sum_probs=95.6

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      ..+.+...+..  +.+|||+|||+|.++..+++. .  +++|+|+++.+++.|+++....+    .++.++++|+.++++
T Consensus        23 ~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~-~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~   93 (243)
T 3d2l_A           23 WVAWVLEQVEP--GKRIADIGCGTGTATLLLADH-Y--EVTGVDLSEEMLEIAQEKAMETN----RHVDFWVQDMRELEL   93 (243)
T ss_dssp             HHHHHHHHSCT--TCEEEEESCTTCHHHHHHTTT-S--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCGGGCCC
T ss_pred             HHHHHHHHcCC--CCeEEEecCCCCHHHHHHhhC-C--eEEEEECCHHHHHHHHHhhhhcC----CceEEEEcChhhcCC
Confidence            34455555543  589999999999999999887 4  99999999999999999887654    579999999988877


Q ss_pred             CCCccceEEecc-hhccCC---CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          234 ASGFVDAVHAGA-ALHCWP---SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       234 ~~~~fD~V~~~~-vl~h~~---d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      + ++||+|++.. +++|+.   ++..+++++.++|||||++++.++.
T Consensus        94 ~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  139 (243)
T 3d2l_A           94 P-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS  139 (243)
T ss_dssp             S-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             C-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence            5 7899999986 999994   4567899999999999999987654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.68  E-value=4.8e-17  Score=140.32  Aligned_cols=107  Identities=13%  Similarity=0.229  Sum_probs=88.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCCCccceEE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH  242 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~  242 (304)
                      .++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|+++.+..+    .++.++++|+.++  ++++++||+|+
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~fD~V~  133 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQT----HKVIPLKGLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCS----SEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcC----CCeEEEecCHHHhhcccCCCceEEEE
Confidence            4577999999999999999977653 489999999999999999887654    6799999999887  88889999999


Q ss_pred             e-cchh--c--cCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          243 A-GAAL--H--CWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       243 ~-~~vl--~--h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      + .+.+  +  |..+...+++++.++|||||+|++.++.
T Consensus       134 ~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          134 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             ECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            9 5543  1  2223447799999999999999987654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.68  E-value=5.7e-16  Score=128.45  Aligned_cols=119  Identities=14%  Similarity=0.218  Sum_probs=100.9

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCC--eEEEEccCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN--LALVRADVCR  230 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~--i~~~~~d~~~  230 (304)
                      ...+.+.+.+...++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.+++++...+.   .+  +.++.+|+.+
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~~~~~~d~~~  113 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNNL---DNYDIRVVHSDLYE  113 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTC---TTSCEEEEECSTTT
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHcCC---CccceEEEECchhc
Confidence            445666677766678899999999999999999884  4999999999999999999887662   33  9999999977


Q ss_pred             CCCCCCccceEEecchhcc-CCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          231 LPFASGFVDAVHAGAALHC-WPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h-~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                       ++++++||+|++..+++| ..+...+++++.++|||||++++.++..
T Consensus       114 -~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          114 -NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             -TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             -ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence             445778999999988887 3466789999999999999999999875

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.68  E-value=2e-16  Score=131.09  Aligned_cols=108  Identities=19%  Similarity=0.184  Sum_probs=86.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CCCCccceEEe
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHA  243 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~  243 (304)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++++..+  . .++.+++.+...++ +.+++||+|++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~~~--~v~~vD~s~~~l~~a~~~~~~~~--~-~~v~~~~~~~~~l~~~~~~~fD~v~~   95 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGLSK--KVYAFDVQEQALGKTSQRLSDLG--I-ENTELILDGHENLDHYVREPIRAAIF   95 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHHT--C-CCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC--C-CcEEEEeCcHHHHHhhccCCcCEEEE
Confidence            3578999999999999999998854  99999999999999999998876  2 78999998877643 44778999988


Q ss_pred             cc-hhcc--------CCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          244 GA-ALHC--------WPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       244 ~~-vl~h--------~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .. .+++        ..+...+++++.++|||||++++..+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  138 (185)
T 3mti_A           96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG  138 (185)
T ss_dssp             EEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred             eCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence            73 3332        1233578899999999999999988754

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.68  E-value=8.9e-16  Score=141.27  Aligned_cols=117  Identities=11%  Similarity=0.127  Sum_probs=101.9

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCc
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (304)
                      +.+.+...+..+|||||||+|.++..+++.++..+++++|+ +.+++.+++++...+  ...++.++.+|+. .+++. .
T Consensus       194 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--l~~~v~~~~~d~~-~~~p~-~  268 (369)
T 3gwz_A          194 VAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRG--LADRCEILPGDFF-ETIPD-G  268 (369)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTT-TCCCS-S
T ss_pred             HHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcC--cCCceEEeccCCC-CCCCC-C
Confidence            34444445678999999999999999999988889999999 999999999988776  4578999999998 46655 8


Q ss_pred             cceEEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          238 VDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      ||+|++.+++||++++.  .++++++++|||||+|++.++....
T Consensus       269 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  312 (369)
T 3gwz_A          269 ADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE  312 (369)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred             ceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            99999999999999886  7999999999999999999987654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.68  E-value=1.1e-16  Score=138.54  Aligned_cols=105  Identities=16%  Similarity=0.109  Sum_probs=92.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC-----Cccc
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS-----GFVD  239 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-----~~fD  239 (304)
                      .++.+|||+|||+|.++..+++.++  +|+|+|+|+.+++.++++..      ..++.++++|+.++++..     ..||
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~d  126 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT------AANISYRLLDGLVPEQAAQIHSEIGDA  126 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC------CTTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc------ccCceEEECcccccccccccccccCcc
Confidence            4578999999999999999999987  99999999999999999762      247999999998865432     2489


Q ss_pred             eEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          240 AVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       240 ~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +|++..+++|++  ++..+++++.++|||||++++.++..
T Consensus       127 ~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  166 (245)
T 3ggd_A          127 NIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT  166 (245)
T ss_dssp             EEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred             EEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            999999999999  88999999999999999999998865

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.68  E-value=8.5e-17  Score=141.23  Aligned_cols=113  Identities=21%  Similarity=0.363  Sum_probs=87.4

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccC--------------------------
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL--------------------------  217 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~--------------------------  217 (304)
                      ..++.+|||||||+|.+...++..+. .+|+|+|+|+.|++.|+++++......                          
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            34677899999999988777766652 379999999999999998765432000                          


Q ss_pred             CCCeE-EEEccCCCC-CC---CCCccceEEecchhccC----CCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          218 TSNLA-LVRADVCRL-PF---ASGFVDAVHAGAALHCW----PSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       218 ~~~i~-~~~~d~~~l-p~---~~~~fD~V~~~~vl~h~----~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..++. ++++|+.+. |+   ..++||+|++.++|||+    ++...+++++.++|||||+|++.+...
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~  200 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR  200 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeec
Confidence            01243 889999873 43   25789999999999996    344689999999999999999998644

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.68  E-value=7e-16  Score=141.67  Aligned_cols=110  Identities=14%  Similarity=0.145  Sum_probs=97.5

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCCCccceEE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH  242 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~  242 (304)
                      ....+|||||||+|.++..+++.++..+++++|+ +.+++.|+++++..+  ...++.++.+|+.+.  |++ ++||+|+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~p-~~~D~v~  253 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLS--GSERIHGHGANLLDRDVPFP-TGFDAVW  253 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCT--TGGGEEEEECCCCSSSCCCC-CCCSEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcC--cccceEEEEccccccCCCCC-CCcCEEE
Confidence            3567999999999999999999988889999999 999999999988766  346899999999875  465 7899999


Q ss_pred             ecchhccCCCHH--HHHHHHHHhcccCcEEEEEEeCCC
Q 021975          243 AGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       243 ~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      +.++|||++++.  .+|++++++|||||+|++.+....
T Consensus       254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  291 (363)
T 3dp7_A          254 MSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWD  291 (363)
T ss_dssp             EESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred             EechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccC
Confidence            999999998774  789999999999999999987654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.68  E-value=2.7e-16  Score=135.22  Aligned_cols=103  Identities=24%  Similarity=0.352  Sum_probs=90.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe-
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-  243 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~-  243 (304)
                      .++.+|||+|||+|.++..+++.++  +++|+|+|+.+++.++++.        .++.++.+|+.++++ +++||+|++ 
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~-~~~~D~v~~~  107 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL--------PDATLHQGDMRDFRL-GRKFSAVVSM  107 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC--------TTCEEEECCTTTCCC-SSCEEEEEEC
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC--------CCCEEEECCHHHccc-CCCCcEEEEc
Confidence            4578999999999999999999986  9999999999999999853        568999999998887 678999995 


Q ss_pred             cchhccCCCH---HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          244 GAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       244 ~~vl~h~~d~---~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ..+++|++++   ..+++++.++|||||++++.++...
T Consensus       108 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  145 (239)
T 3bxo_A          108 FSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFP  145 (239)
T ss_dssp             TTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred             CchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence            5599999654   6899999999999999999876653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.68  E-value=5.2e-16  Score=131.15  Aligned_cols=113  Identities=18%  Similarity=0.118  Sum_probs=98.4

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      .....+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.++++++..+   ..++.++.+|+...+
T Consensus        64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~  138 (210)
T 3lbf_A           64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQ--HVCSVERIKGLQWQARRRLKNLD---LHNVSTRHGDGWQGW  138 (210)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEecCHHHHHHHHHHHHHcC---CCceEEEECCcccCC
Confidence            4455666677777789999999999999999999865  99999999999999999998876   257999999998866


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ..+++||+|++..+++|+++      ++.++|||||++++....
T Consensus       139 ~~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          139 QARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             GGGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred             ccCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence            66789999999999999986      588999999999998876

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.67  E-value=4.3e-16  Score=141.17  Aligned_cols=110  Identities=19%  Similarity=0.176  Sum_probs=97.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++++...+  ...++.++.+|+. .+++. +||+|++.
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~-~~~p~-~~D~v~~~  242 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTG--LSGRAQVVVGSFF-DPLPA-GAGGYVLS  242 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTT-SCCCC-SCSEEEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcC--cCcCeEEecCCCC-CCCCC-CCcEEEEe
Confidence            3467999999999999999999988889999999 999999999988776  4578999999997 45555 89999999


Q ss_pred             chhccCCCH--HHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          245 AALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       245 ~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      +++||++++  ..++++++++|||||+|++.++....
T Consensus       243 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  279 (332)
T 3i53_A          243 AVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD  279 (332)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred             hhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence            999999987  78999999999999999999876543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.67  E-value=3.7e-16  Score=133.17  Aligned_cols=95  Identities=21%  Similarity=0.302  Sum_probs=87.7

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (304)
                      +.+|||+|||+|.++..++..      +|+|+++.+++.++++          ++.++.+|+..+++++++||+|++..+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMVTT  111 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----------CCEEEEcccccCCCCCCCeeEEEEcch
Confidence            779999999999999888654      9999999999999882          688999999998888889999999999


Q ss_pred             hccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       247 l~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++|++++..+++++.++|||||++++.++..
T Consensus       112 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  142 (219)
T 1vlm_A          112 ICFVDDPERALKEAYRILKKGGYLIVGIVDR  142 (219)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             HhhccCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence            9999999999999999999999999998765

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.67  E-value=1.1e-15  Score=140.06  Aligned_cols=119  Identities=15%  Similarity=0.127  Sum_probs=102.5

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      +.+.+.+...++.+|||||||+|.++..+++..+..+++++|+ +.+++.++++++..+  ...++.++.+|+.+.++++
T Consensus       180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~  256 (359)
T 1x19_A          180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESYPE  256 (359)
T ss_dssp             HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT--CTTTEEEEECCTTTSCCCC
T ss_pred             HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcC--CCCCEEEEeCccccCCCCC
Confidence            3444555555678999999999999999999988889999999 999999999988776  3456999999999877664


Q ss_pred             CccceEEecchhccCCC--HHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          236 GFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      .  |+|++..++||+++  ...+++++.++|||||++++.++....
T Consensus       257 ~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  300 (359)
T 1x19_A          257 A--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD  300 (359)
T ss_dssp             C--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCC
T ss_pred             C--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCC
Confidence            3  99999999999998  678999999999999999999877543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.67  E-value=9.6e-16  Score=130.18  Aligned_cols=107  Identities=21%  Similarity=0.244  Sum_probs=92.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CCCCccceEEe
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHA  243 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~  243 (304)
                      ++.+|||||||+|.++..+++..+..+++|+|+++.+++.|+++++..+   ..++.++++|+..++  +++++||+|++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~D~i~~  117 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG---VPNIKLLWVDGSDLTDYFEDGEIDRLYL  117 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC---CSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC---CCCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence            4679999999999999999999877899999999999999999998876   268999999999877  77889999999


Q ss_pred             cchhccCC--------CHHHHHHHHHHhcccCcEEEEEEe
Q 021975          244 GAALHCWP--------SPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       244 ~~vl~h~~--------d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .+...+..        ....+++++.++|||||++++.+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  157 (214)
T 1yzh_A          118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  157 (214)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence            86543221        125799999999999999999874

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.67  E-value=2.1e-16  Score=134.51  Aligned_cols=110  Identities=19%  Similarity=0.223  Sum_probs=93.0

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC---CC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PF  233 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~  233 (304)
                      .+...+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.++++         .++.+..+|+.++   ++
T Consensus        43 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~  111 (227)
T 3e8s_A           43 AILLAILGRQPERVLDLGCGEGWLLRALADRGI--EAVGVDGDRTLVDAARAA---------GAGEVHLASYAQLAEAKV  111 (227)
T ss_dssp             HHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHT---------CSSCEEECCHHHHHTTCS
T ss_pred             HHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC--EEEEEcCCHHHHHHHHHh---------cccccchhhHHhhccccc
Confidence            344555555678999999999999999999865  999999999999999984         4567888887665   44


Q ss_pred             CC-CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          234 AS-GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       234 ~~-~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      .. ++||+|++.++++ ..++..+++++.++|||||++++.++...
T Consensus       112 ~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  156 (227)
T 3e8s_A          112 PVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPW  156 (227)
T ss_dssp             CCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             ccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence            44 4599999999999 88999999999999999999999998663

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.67  E-value=7.9e-16  Score=139.34  Aligned_cols=118  Identities=14%  Similarity=0.255  Sum_probs=100.9

Q ss_pred             HHHHhhcc--cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          157 MAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       157 ~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      .+.+.+..  .++.+|||+|||+|.++..+++..+..+++++|++ .+++.+++++...+  ...++.++.+|+.+.+++
T Consensus       154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~  230 (335)
T 2r3s_A          154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQG--VASRYHTIAGSAFEVDYG  230 (335)
T ss_dssp             HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHT--CGGGEEEEESCTTTSCCC
T ss_pred             HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcC--CCcceEEEecccccCCCC
Confidence            34444444  56789999999999999999999777799999999 99999999988766  345799999999887766


Q ss_pred             CCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++ ||+|++.+++||++++  ..+++++.++|||||++++.++...
T Consensus       231 ~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  275 (335)
T 2r3s_A          231 ND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN  275 (335)
T ss_dssp             SC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred             CC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence            54 9999999999999766  5899999999999999999987754

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.66  E-value=1.2e-15  Score=132.43  Aligned_cols=106  Identities=25%  Similarity=0.421  Sum_probs=90.2

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      ..++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.++++....+    .++.++++|+.+++++ ++||+|++
T Consensus        39 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~-~~fD~v~~  111 (252)
T 1wzn_A           39 KREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKERN----LKIEFLQGDVLEIAFK-NEFDAVTM  111 (252)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEESCGGGCCCC-SCEEEEEE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhcC----CceEEEECChhhcccC-CCccEEEE
Confidence            34568999999999999999999865  99999999999999999987765    4799999999888764 68999998


Q ss_pred             cc-hhccCC--CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          244 GA-ALHCWP--SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       244 ~~-vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .. +++|+.  +...+++++.++|||||++++..+.
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            64 455554  4568999999999999999987654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.66  E-value=5.4e-16  Score=131.92  Aligned_cols=107  Identities=18%  Similarity=0.231  Sum_probs=90.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CCCCccceEEe
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHA  243 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~  243 (304)
                      ++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|+++++..+   ..++.++++|+..++  +++++||.|++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~---~~nv~~~~~d~~~l~~~~~~~~~d~v~~  114 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE---AQNVKLLNIDADTLTDVFEPGEVKRVYL  114 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC---CSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC---CCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence            4679999999999999999999777899999999999999999988776   267999999998865  67889999987


Q ss_pred             cchhccCCC--------HHHHHHHHHHhcccCcEEEEEEe
Q 021975          244 GAALHCWPS--------PSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       244 ~~vl~h~~d--------~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .+...+...        ...+++++.++|||||.|++.+.
T Consensus       115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td  154 (213)
T 2fca_A          115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD  154 (213)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence            654322111        25789999999999999999873

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.66  E-value=2.4e-16  Score=134.66  Aligned_cols=108  Identities=15%  Similarity=0.157  Sum_probs=90.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-C--CCCCccceEE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVDAVH  242 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~~~fD~V~  242 (304)
                      ++.+|||||||+|.++..+++.++..+|+|+|+++.+++.|+++.+..+   ..++.++++|+.++ +  +++++||.|+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~---l~nv~~~~~Da~~~l~~~~~~~~~d~v~  110 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG---LSNLRVMCHDAVEVLHKMIPDNSLRMVQ  110 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT---CSSEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC---CCcEEEEECCHHHHHHHHcCCCChheEE
Confidence            4679999999999999999999888899999999999999999988776   35799999998774 3  6789999999


Q ss_pred             ecchhccCCCH--------HHHHHHHHHhcccCcEEEEEEeC
Q 021975          243 AGAALHCWPSP--------SNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       243 ~~~vl~h~~d~--------~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +.+...+....        ..+++++.++|||||+|++.+..
T Consensus       111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~  152 (218)
T 3dxy_A          111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW  152 (218)
T ss_dssp             EESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence            87543322111        25899999999999999998853

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.66  E-value=1.1e-15  Score=140.62  Aligned_cols=113  Identities=14%  Similarity=0.198  Sum_probs=97.8

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCc
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (304)
                      +.+.+...++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++++...+  ...++.++.+|+.+ +++. .
T Consensus       174 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~~~~-~  248 (374)
T 1qzz_A          174 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG--LADRVTVAEGDFFK-PLPV-T  248 (374)
T ss_dssp             HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTS-CCSC-C
T ss_pred             HHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcC--CCCceEEEeCCCCC-cCCC-C
Confidence            34444445678999999999999999999987789999999 999999999988776  34589999999975 4444 4


Q ss_pred             cceEEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEe
Q 021975          238 VDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ||+|++.+++||++++.  .+++++.++|||||++++.++
T Consensus       249 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          249 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            99999999999999885  899999999999999999887

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.66  E-value=1.1e-15  Score=126.75  Aligned_cols=110  Identities=17%  Similarity=0.226  Sum_probs=94.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      ..+...+  .++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++.        .++.++.+|+..+++++
T Consensus        38 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~~~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~  105 (195)
T 3cgg_A           38 RLIDAMA--PRGAKILDAGCGQGRIGGYLSKQGH--DVLGTDLDPILIDYAKQDF--------PEARWVVGDLSVDQISE  105 (195)
T ss_dssp             HHHHHHS--CTTCEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHC--------TTSEEEECCTTTSCCCC
T ss_pred             HHHHHhc--cCCCeEEEECCCCCHHHHHHHHCCC--cEEEEcCCHHHHHHHHHhC--------CCCcEEEcccccCCCCC
Confidence            3444443  3578999999999999999999865  9999999999999999853        46899999999988888


Q ss_pred             CccceEEec-chhccCC--CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAG-AALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~-~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++||+|++. .+++|+.  +...+++++.++|||||++++.....
T Consensus       106 ~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~  150 (195)
T 3cgg_A          106 TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG  150 (195)
T ss_dssp             CCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             CceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            899999998 7899985  34789999999999999999988765

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.66  E-value=7.6e-16  Score=138.38  Aligned_cols=111  Identities=20%  Similarity=0.257  Sum_probs=91.8

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc----cCCCCeEEEEccCCCCC----CC--C
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT----ILTSNLALVRADVCRLP----FA--S  235 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~----~~~~~i~~~~~d~~~lp----~~--~  235 (304)
                      ++.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.++++....+.    ....++.++++|+..++    ++  +
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGR-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            57799999999999999998753 56999999999999999998765310    01247899999998876    53  4


Q ss_pred             CccceEEecchhccC-C---CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAALHCW-P---SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~-~---d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++||+|++.+++||+ .   ++..+++++.++|||||++++.++..
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence            589999999999988 3   45689999999999999999999864

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.65  E-value=1.9e-15  Score=131.60  Aligned_cols=121  Identities=21%  Similarity=0.327  Sum_probs=103.0

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (304)
                      .........+...+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.|+++++..+  ...++.++.+|
T Consensus        76 ~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~v~~~~~d  153 (255)
T 3mb5_A           76 IVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG--FDDRVTIKLKD  153 (255)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT--CTTTEEEECSC
T ss_pred             cccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC--CCCceEEEECc
Confidence            334455567777777778899999999999999999998 767799999999999999999998877  34559999999


Q ss_pred             CCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +.+. +++++||+|++     +.+++..+++++.++|||||++++..+..
T Consensus       154 ~~~~-~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  197 (255)
T 3mb5_A          154 IYEG-IEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCS  197 (255)
T ss_dssp             GGGC-CCCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             hhhc-cCCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCH
Confidence            9864 66788999998     56788899999999999999999987643

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.65  E-value=8.8e-16  Score=132.63  Aligned_cols=112  Identities=19%  Similarity=0.210  Sum_probs=87.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc---CccCCCCeEEEEccCCC-CC--CCCCcc
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---NTILTSNLALVRADVCR-LP--FASGFV  238 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~i~~~~~d~~~-lp--~~~~~f  238 (304)
                      .++.+|||||||+|.++..+++..+...++|+|+++.+++.|+++++..   ......++.++++|+.. ++  +++++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            3466899999999999999999987789999999999999999877531   00023689999999987 66  778999


Q ss_pred             ceEEecchhccCCC--------HHHHHHHHHHhcccCcEEEEEEeC
Q 021975          239 DAVHAGAALHCWPS--------PSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       239 D~V~~~~vl~h~~d--------~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      |.|++.+.-.+...        ...+++++.++|||||.|++.+..
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~  170 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV  170 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence            99987543221110        136899999999999999998754

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.65  E-value=2.6e-16  Score=139.79  Aligned_cols=120  Identities=21%  Similarity=0.282  Sum_probs=87.8

Q ss_pred             HHHHHhhcc--cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc--------------C--
Q 021975          156 KMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--------------L--  217 (304)
Q Consensus       156 ~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--------------~--  217 (304)
                      +.+.+.+..  .++.+|||||||+|.+...++... ..+|+|+|+|+.|++.|+++++.....              .  
T Consensus        59 ~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~  137 (289)
T 2g72_A           59 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG  137 (289)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred             HHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccC-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence            334444432  367899999999999554444332 349999999999999998865431100              0  


Q ss_pred             -----------CCCeEEEEccCCC-CCC-----CCCccceEEecchhcc----CCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          218 -----------TSNLALVRADVCR-LPF-----ASGFVDAVHAGAALHC----WPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       218 -----------~~~i~~~~~d~~~-lp~-----~~~~fD~V~~~~vl~h----~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                                 ...+.++.+|+.. +|+     ++++||+|++.++|+|    ++++..+++++.++|||||+|++....
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~  217 (289)
T 2g72_A          138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL  217 (289)
T ss_dssp             CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence                       0015677889987 654     3467999999999999    667889999999999999999997643

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.65  E-value=1.6e-15  Score=138.04  Aligned_cols=112  Identities=22%  Similarity=0.332  Sum_probs=96.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+++ +++.|+++++..+  ...++.++.+|+.++++++
T Consensus        54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~  129 (340)
T 2fyt_A           54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRLNK--LEDTITLIKGKIEEVHLPV  129 (340)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHHTT--CTTTEEEEESCTTTSCCSC
T ss_pred             HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHHcC--CCCcEEEEEeeHHHhcCCC
Confidence            344455555678899999999999999999885 45999999997 9999999998877  4578999999999998888


Q ss_pred             CccceEEecc---hhccCCCHHHHHHHHHHhcccCcEEE
Q 021975          236 GFVDAVHAGA---ALHCWPSPSNAVAEISRILRSGGVFV  271 (304)
Q Consensus       236 ~~fD~V~~~~---vl~h~~d~~~~l~~~~r~LkpgG~lv  271 (304)
                      ++||+|++..   .+.|..++..++.++.++|||||+++
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            8999999865   57777788899999999999999988

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.65  E-value=1.3e-15  Score=138.97  Aligned_cols=118  Identities=13%  Similarity=0.214  Sum_probs=100.7

Q ss_pred             HHHhhcccC-CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CCC
Q 021975          158 AQEYFKSAQ-GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FAS  235 (304)
Q Consensus       158 l~~~l~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~  235 (304)
                      +.+.+...+ +.+|||||||+|.++..+++.++..+++++|+ +.+++.+++++...+  ...++.++.+|+.+.+ +..
T Consensus       170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~  246 (352)
T 3mcz_A          170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHD--LGGRVEFFEKNLLDARNFEG  246 (352)
T ss_dssp             HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTT--CGGGEEEEECCTTCGGGGTT
T ss_pred             HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcC--CCCceEEEeCCcccCcccCC
Confidence            333444445 78999999999999999999988889999999 889999999888766  3467999999998865 134


Q ss_pred             CccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          236 GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      +.||+|++.+++||++++  ..++++++++|||||+|++.++...
T Consensus       247 ~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  291 (352)
T 3mcz_A          247 GAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMN  291 (352)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCC
T ss_pred             CCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            569999999999999977  7899999999999999999987654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.64  E-value=3.1e-15  Score=130.16  Aligned_cols=121  Identities=14%  Similarity=0.112  Sum_probs=103.1

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhc-CccCCCCeEEEEc
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRA  226 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~  226 (304)
                      .........+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.++++++.. +   ..++.++.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g---~~~v~~~~~  155 (258)
T 2pwy_A           79 PTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ---VENVRFHLG  155 (258)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---CCCEEEEES
T ss_pred             cccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---CCCEEEEEC
Confidence            334445566677777777889999999999999999998 66679999999999999999998776 4   367999999


Q ss_pred             cCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       227 d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      |+.+.++++++||+|++     +.+++..+++++.++|||||++++.++..
T Consensus       156 d~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  201 (258)
T 2pwy_A          156 KLEEAELEEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNI  201 (258)
T ss_dssp             CGGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred             chhhcCCCCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            99887777889999998     46788899999999999999999988654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.64  E-value=7.8e-16  Score=141.29  Aligned_cols=125  Identities=12%  Similarity=0.111  Sum_probs=100.0

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH-------hcCccCCCCeEEEE
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK-------QDNTILTSNLALVR  225 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-------~~~~~~~~~i~~~~  225 (304)
                      ..+..+.+.+...++.+|||||||+|..+..++...+..+++|||+++.+++.|+++.+       ..++ ...++.|++
T Consensus       160 ~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl-~~~rVefi~  238 (438)
T 3uwp_A          160 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK-KHAEYTLER  238 (438)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB-CCCEEEEEE
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC-CCCCeEEEE
Confidence            34555666677778899999999999999999877544469999999999999987542       2331 126899999


Q ss_pred             ccCCCCCCCC--CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          226 ADVCRLPFAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       226 ~d~~~lp~~~--~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      +|+.++++.+  ..||+|+++.++ +.++....|.++.++|||||+|++.+...+.
T Consensus       239 GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~  293 (438)
T 3uwp_A          239 GDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAPL  293 (438)
T ss_dssp             CCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred             CcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence            9999988754  479999998766 4578888999999999999999998776643

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.64  E-value=1.5e-15  Score=137.59  Aligned_cols=117  Identities=15%  Similarity=0.095  Sum_probs=99.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      ..+.+.+...+ .+|||+|||+|.++..+++..+..+++++|+ +.+++.+++++...+  ...++.++.+|+.+ +++ 
T Consensus       158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~~~-  231 (334)
T 2ip2_A          158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL--AGERVSLVGGDMLQ-EVP-  231 (334)
T ss_dssp             HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH--HTTSEEEEESCTTT-CCC-
T ss_pred             HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC--CCCcEEEecCCCCC-CCC-
Confidence            33444444344 8999999999999999999987789999999 999999999877654  34689999999977 555 


Q ss_pred             CccceEEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEeCCC
Q 021975          236 GFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++||+|++..++||++++.  .+++++.++|||||++++.++...
T Consensus       232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  276 (334)
T 2ip2_A          232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTIS  276 (334)
T ss_dssp             SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            6799999999999998877  899999999999999999987654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.64  E-value=8e-16  Score=128.68  Aligned_cols=111  Identities=18%  Similarity=0.292  Sum_probs=92.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CCCCccceEE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVH  242 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~  242 (304)
                      .++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.|+++++..+  ...++.++++|+.+++ +.+++||+|+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~v~   98 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN--LIDRVTLIKDGHQNMDKYIDCPVKAVM   98 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT--CGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECCHHHHhhhccCCceEEE
Confidence            45789999999999999999987 445699999999999999999998876  3468999999998775 5568999999


Q ss_pred             ecchh---------ccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          243 AGAAL---------HCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       243 ~~~vl---------~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +...+         ++..+...+++++.++|||||++++..+..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  142 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG  142 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence            87654         111134579999999999999999998654

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.64  E-value=6.3e-16  Score=131.46  Aligned_cols=110  Identities=24%  Similarity=0.302  Sum_probs=88.3

Q ss_pred             hcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH----hcCccCCCCeEEEEccCCCCCCCCCc
Q 021975          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK----QDNTILTSNLALVRADVCRLPFASGF  237 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~----~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (304)
                      +...++.+|||||||+|.++..+++.++..+|+|+|+|+.+++.+.+..+    ..+   ..++.++++|+.++|+.+++
T Consensus        23 l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~---~~~v~~~~~d~~~l~~~~~~   99 (218)
T 3mq2_A           23 LRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGG---LPNLLYLWATAERLPPLSGV   99 (218)
T ss_dssp             HHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC---CTTEEEEECCSTTCCSCCCE
T ss_pred             hhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC---CCceEEEecchhhCCCCCCC
Confidence            34456789999999999999999999777899999999998886433332    222   35899999999999987766


Q ss_pred             cceEEe---cchh--ccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          238 VDAVHA---GAAL--HCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       238 fD~V~~---~~vl--~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                       |.|+.   ...+  +|++++..+++++.++|||||++++...
T Consensus       100 -d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (218)
T 3mq2_A          100 -GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN  141 (218)
T ss_dssp             -EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence             76663   3334  3888999999999999999999999653

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.64  E-value=1.7e-15  Score=132.46  Aligned_cols=111  Identities=14%  Similarity=0.202  Sum_probs=88.5

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      ..+.+...+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++.+..         ++..++.+++.
T Consensus        33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~--~V~gvD~S~~ml~~Ar~~~~~~---------~v~~~~~~~~~  101 (261)
T 3iv6_A           33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALERGA--SVTVFDFSQRMCDDLAEALADR---------CVTIDLLDITA  101 (261)
T ss_dssp             HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTSSS---------CCEEEECCTTS
T ss_pred             HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHhc---------cceeeeeeccc
Confidence            344556666777788999999999999999999876  9999999999999999976432         23333333322


Q ss_pred             -----CCCccceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          234 -----ASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       234 -----~~~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                           .+++||+|++..+++|+.  +...+++++.++| |||+++++...
T Consensus       102 ~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          102 EIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             CCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             ccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence                 256899999999999986  3457999999999 99999998754

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.64  E-value=1.9e-15  Score=138.13  Aligned_cols=107  Identities=16%  Similarity=0.256  Sum_probs=92.8

Q ss_pred             cccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEE
Q 021975          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (304)
                      ...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++.+..+  ...++.++++|+.++++++++||+|+
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~g-~~~v~gvD~s~-~l~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~fD~Ii  138 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSS-ISDYAVKIVKANK--LDHVVTIIKGKVEEVELPVEKVDIII  138 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHTT--CTTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHCC-CCEEEEECcHH-HHHHHHHHHHHcC--CCCcEEEEECcHHHccCCCCceEEEE
Confidence            34567899999999999999999984 46999999995 9999999998887  45669999999999998889999999


Q ss_pred             ecch---hccCCCHHHHHHHHHHhcccCcEEEEE
Q 021975          243 AGAA---LHCWPSPSNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       243 ~~~v---l~h~~d~~~~l~~~~r~LkpgG~lvi~  273 (304)
                      +..+   +.+..++..+++++.++|||||+++..
T Consensus       139 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          139 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             EccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            8654   555578999999999999999998743

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.64  E-value=1.6e-15  Score=133.85  Aligned_cols=113  Identities=20%  Similarity=0.211  Sum_probs=94.5

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhc-CccCCCCeEEEEccCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~lp~  233 (304)
                      ..+...+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.++++++.. +   ..++.++.+|+.+ ++
T Consensus       100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~-~~  175 (275)
T 1yb2_A          100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD---IGNVRTSRSDIAD-FI  175 (275)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC---CTTEEEECSCTTT-CC
T ss_pred             HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC---CCcEEEEECchhc-cC
Confidence            45556666677889999999999999999987 55669999999999999999998876 5   2579999999987 66


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++++||+|++     |++++..+++++.++|||||++++.++..
T Consensus       176 ~~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  214 (275)
T 1yb2_A          176 SDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNF  214 (275)
T ss_dssp             CSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             cCCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            6788999998     67889999999999999999999998654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.63  E-value=1.5e-16  Score=131.22  Aligned_cols=119  Identities=10%  Similarity=0.051  Sum_probs=96.8

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (304)
                      +..+.....+..++..  ..+|||+|||+|.++..++...|..+|+++|+|+.|++.++++++..+  ...++.+  +|.
T Consensus        34 p~ld~fY~~~~~~l~~--~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g--~~~~v~~--~d~  107 (200)
T 3fzg_A           34 ATLNDFYTYVFGNIKH--VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLK--TTIKYRF--LNK  107 (200)
T ss_dssp             GGHHHHHHHHHHHSCC--CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSC--CSSEEEE--ECC
T ss_pred             HhHHHHHHHHHhhcCC--CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC--CCccEEE--ecc
Confidence            3344555566666643  779999999999999999998888899999999999999999998877  2335666  566


Q ss_pred             CCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ... .+.++||+|++..+|||+.+....+.++.+.|||||++|-..
T Consensus       108 ~~~-~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          108 ESD-VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             HHH-HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             ccc-CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence            443 346889999999999999777778889999999999887766

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.63  E-value=7.1e-16  Score=129.96  Aligned_cols=121  Identities=11%  Similarity=0.089  Sum_probs=94.8

Q ss_pred             HHHHHHHhhcc-cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCC-CCeEEEEccCCCC
Q 021975          154 EFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRADVCRL  231 (304)
Q Consensus       154 ~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~-~~i~~~~~d~~~l  231 (304)
                      ..+.+.+.+.. .++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|+++++..+  .. .++.++++|+.++
T Consensus        40 ~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~d~~~~  116 (201)
T 2ift_A           40 VKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLK--CSSEQAEVINQSSLDF  116 (201)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTT--CCTTTEEEECSCHHHH
T ss_pred             HHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhC--CCccceEEEECCHHHH
Confidence            33344444433 2578999999999999998777753 589999999999999999998876  22 5899999998764


Q ss_pred             CC--CCCc-cceEEecchhccCCCHHHHHHHH--HHhcccCcEEEEEEeCCC
Q 021975          232 PF--ASGF-VDAVHAGAALHCWPSPSNAVAEI--SRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       232 p~--~~~~-fD~V~~~~vl~h~~d~~~~l~~~--~r~LkpgG~lvi~~~~~~  278 (304)
                      ..  .+++ ||+|++...++ ..+...+++++  .++|||||++++.+....
T Consensus       117 ~~~~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          117 LKQPQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             TTSCCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             HHhhccCCCCCEEEECCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            32  3578 99999987744 56777889999  668999999999887654

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.63  E-value=2e-15  Score=130.62  Aligned_cols=103  Identities=17%  Similarity=0.080  Sum_probs=89.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC---CCccceE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV  241 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V  241 (304)
                      .++.+|||||||+|.++..++...+..+|+|+|+++.+++.++++.+..++   .++.++++|+.++++.   +++||+|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~fD~V  145 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL---ENTTFCHDRAETFGQRKDVRESYDIV  145 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCEEEEeccHHHhcccccccCCccEE
Confidence            357899999999999999999766667999999999999999999888762   4699999999887653   5789999


Q ss_pred             EecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ++..    +.++..+++++.++|||||++++..
T Consensus       146 ~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~  174 (240)
T 1xdz_A          146 TARA----VARLSVLSELCLPLVKKNGLFVALK  174 (240)
T ss_dssp             EEEC----CSCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEec----cCCHHHHHHHHHHhcCCCCEEEEEe
Confidence            9976    4678999999999999999998875

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.63  E-value=3e-15  Score=137.05  Aligned_cols=114  Identities=18%  Similarity=0.322  Sum_probs=98.0

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCc
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (304)
                      +.+.+...++.+|||||||+|.++..+++.++..+++++|+ +.+++.++++++..+  ...++.++.+|+.+ +++. .
T Consensus       175 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~~~~-~  249 (360)
T 1tw3_A          175 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG--LSDRVDVVEGDFFE-PLPR-K  249 (360)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT--CTTTEEEEECCTTS-CCSS-C
T ss_pred             HHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcC--CCCceEEEeCCCCC-CCCC-C
Confidence            33444445678999999999999999999988889999999 999999999988776  34589999999875 4444 4


Q ss_pred             cceEEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEeC
Q 021975          238 VDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ||+|++..++||++++.  .+++++.++|||||++++.++.
T Consensus       250 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          250 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            99999999999999874  8999999999999999999876

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.63  E-value=5.6e-16  Score=135.25  Aligned_cols=112  Identities=18%  Similarity=0.353  Sum_probs=91.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc--------------C------------C
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--------------L------------T  218 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--------------~------------~  218 (304)
                      .++.+|||||||+|.++..++..+. .+|+|+|+|+.+++.+++++...+..              .            .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            4567899999999999998888764 58999999999999999987543200              0            0


Q ss_pred             CCe-EEEEccCCCCC-CCC---CccceEEecchhc----cCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          219 SNL-ALVRADVCRLP-FAS---GFVDAVHAGAALH----CWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       219 ~~i-~~~~~d~~~lp-~~~---~~fD~V~~~~vl~----h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .++ .++++|+...+ +++   ++||+|++..+++    |+.++..+++++.++|||||+|++.+...
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  201 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALK  201 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCC
Confidence            127 89999998754 355   7999999999999    66678899999999999999999988643

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.62  E-value=3.1e-15  Score=128.50  Aligned_cols=101  Identities=14%  Similarity=0.201  Sum_probs=86.4

Q ss_pred             hcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC----CCCCCCc
Q 021975          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGF  237 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~  237 (304)
                      +...++.+|||+|||+|.++..+++..+..+|+|+|+++.+++.++++.+..     .++.++.+|+..    +++. ++
T Consensus        70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~-~~  143 (230)
T 1fbn_A           70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----ENIIPILGDANKPQEYANIV-EK  143 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-----TTEEEEECCTTCGGGGTTTS-CC
T ss_pred             cCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-----CCeEEEECCCCCcccccccC-cc
Confidence            3445678999999999999999999854569999999999999999876542     589999999988    7766 78


Q ss_pred             cceEEecchhccCCCH---HHHHHHHHHhcccCcEEEEE
Q 021975          238 VDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~---~~~l~~~~r~LkpgG~lvi~  273 (304)
                      ||+|+     ++++++   ..+++++.++|||||++++.
T Consensus       144 ~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          144 VDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            99998     556777   77899999999999999997

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.62  E-value=2.6e-15  Score=124.22  Aligned_cols=119  Identities=19%  Similarity=0.222  Sum_probs=99.3

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      .......+...+...++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.++++++..+  ...++.++.+|+..
T Consensus        18 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~   93 (192)
T 1l3i_A           18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHG--LGDNVTLMEGDAPE   93 (192)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTT--CCTTEEEEESCHHH
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcC--CCcceEEEecCHHH
Confidence            44555667777777778899999999999999999987  499999999999999999988776  33689999999866


Q ss_pred             CCCCC-CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          231 LPFAS-GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       231 lp~~~-~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                       ++++ ++||+|++..+++|   ...+++++.++|+|||++++.++..
T Consensus        94 -~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~l~~gG~l~~~~~~~  137 (192)
T 1l3i_A           94 -ALCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAILL  137 (192)
T ss_dssp             -HHTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             -hcccCCCCCEEEECCchHH---HHHHHHHHHHhcCCCcEEEEEecCc
Confidence             2333 58999999887764   5889999999999999999988653

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.62  E-value=6e-15  Score=126.62  Aligned_cols=118  Identities=14%  Similarity=0.170  Sum_probs=95.9

Q ss_pred             HHHHHHHHh---hcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975          153 EEFKMAQEY---FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (304)
Q Consensus       153 ~~~~~l~~~---l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (304)
                      ++...+..-   +...++.+|||+|||+|.++..+++. |+.++|+|+|+++.|++.++++.+..     .++..+.+|.
T Consensus        61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-----~ni~~V~~d~  135 (233)
T 4df3_A           61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-----RNIFPILGDA  135 (233)
T ss_dssp             HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC-----TTEEEEESCT
T ss_pred             HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh-----cCeeEEEEec
Confidence            444444432   44678999999999999999999987 78889999999999999999876543     5789999888


Q ss_pred             CC---CCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          229 CR---LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       229 ~~---lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..   .++..+++|+|++.  +.|..++..++.++.+.|||||+++++...+
T Consensus       136 ~~p~~~~~~~~~vDvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r  185 (233)
T 4df3_A          136 RFPEKYRHLVEGVDGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKAR  185 (233)
T ss_dssp             TCGGGGTTTCCCEEEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             cCccccccccceEEEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEecc
Confidence            65   34567889998864  5566778899999999999999999986554

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.62  E-value=3.4e-15  Score=137.71  Aligned_cols=107  Identities=18%  Similarity=0.211  Sum_probs=94.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.++++++.++    .++.++.+|+.+.+.++++||+|+++
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g~--~V~gvDis~~al~~A~~n~~~~~----~~v~~~~~D~~~~~~~~~~fD~Ii~n  305 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMGA--EVVGVEDDLASVLSLQKGLEANA----LKAQALHSDVDEALTEEARFDIIVTN  305 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTTC--EEEEEESBHHHHHHHHHHHHHTT----CCCEEEECSTTTTSCTTCCEEEEEEC
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcC----CCeEEEEcchhhccccCCCeEEEEEC
Confidence            3577999999999999999999865  99999999999999999998876    35899999999887767899999999


Q ss_pred             chhcc-----CCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          245 AALHC-----WPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       245 ~vl~h-----~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..+++     ..+...+++++.++|||||++++.....
T Consensus       306 pp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          306 PPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             CCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             CchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence            98888     4456789999999999999999987544

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.62  E-value=4.3e-15  Score=136.85  Aligned_cols=125  Identities=14%  Similarity=0.118  Sum_probs=100.5

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      +...+++.+.+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.++++++.++.....++.++.+|+.. 
T Consensus       208 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-  286 (375)
T 4dcm_A          208 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-  286 (375)
T ss_dssp             CHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-
T ss_pred             cHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-
Confidence            3444567777777677899999999999999999998778999999999999999999988763222368999999987 


Q ss_pred             CCCCCccceEEecchhccCCC-----HHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          232 PFASGFVDAVHAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d-----~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++++++||+|+++..+++...     ...+++++.++|||||+++++....
T Consensus       287 ~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~  337 (375)
T 4dcm_A          287 GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH  337 (375)
T ss_dssp             TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence            566789999999988876322     2368999999999999999987544

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.62  E-value=8.1e-16  Score=126.44  Aligned_cols=121  Identities=16%  Similarity=0.152  Sum_probs=95.0

Q ss_pred             HHHHHHHhhc-ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-C
Q 021975          154 EFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L  231 (304)
Q Consensus       154 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l  231 (304)
                      ..+.+.+.+. ..++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.++++++..+  ...++.++.+|+.+ +
T Consensus        18 ~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~   94 (177)
T 2esr_A           18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEKNRKAQAIIQDNIIMTK--AENRFTLLKMEAERAI   94 (177)
T ss_dssp             CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHHTTT--CGGGEEEECSCHHHHH
T ss_pred             HHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECcHHHhH
Confidence            3445555555 4467899999999999999999884 4599999999999999999998876  33579999999876 3


Q ss_pred             CCCCCccceEEecchhccCCCHHHHHHHHH--HhcccCcEEEEEEeCCC
Q 021975          232 PFASGFVDAVHAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTFLRY  278 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~--r~LkpgG~lvi~~~~~~  278 (304)
                      +..+++||+|++...+++ .+....++.+.  ++|||||++++.+....
T Consensus        95 ~~~~~~fD~i~~~~~~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           95 DCLTGRFDLVFLDPPYAK-ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             HHBCSCEEEEEECCSSHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             HhhcCCCCEEEECCCCCc-chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            433567999999866532 34456777777  99999999999887653

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.62  E-value=7.2e-15  Score=120.69  Aligned_cols=116  Identities=16%  Similarity=0.202  Sum_probs=98.6

Q ss_pred             CcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC
Q 021975          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (304)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (304)
                      ......+.+...+...++.+|||+|||+|.++..+++.  ..+++|+|+++.+++.++++++..+.   .++.++.+|+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~~   93 (183)
T 2yxd_A           19 TKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKR--CKFVYAIDYLDGAIEVTKQNLAKFNI---KNCQIIKGRAE   93 (183)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTT--SSEEEEEECSHHHHHHHHHHHHHTTC---CSEEEEESCHH
T ss_pred             CHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCC---CcEEEEECCcc
Confidence            34555666777777777889999999999999999983  45999999999999999999988762   57999999997


Q ss_pred             CCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      + ++++++||+|++..+    .++..+++++.++  |||.+++.++..
T Consensus        94 ~-~~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~  134 (183)
T 2yxd_A           94 D-VLDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVL  134 (183)
T ss_dssp             H-HGGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCH
T ss_pred             c-cccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEeccc
Confidence            7 666789999999987    6788999999998  999999988654

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.62  E-value=3e-15  Score=126.20  Aligned_cols=121  Identities=10%  Similarity=0.092  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhhccc-CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          152 DEEFKMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       152 ~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      +...+.+.+.+... ++.+|||+|||+|.++..++..+. .+|+|+|+++.+++.|+++++..+.   .++.++++|+.+
T Consensus        39 ~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~D~~~  114 (202)
T 2fpo_A           39 DRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKA---GNARVVNSNAMS  114 (202)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTC---CSEEEECSCHHH
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHH
Confidence            34444455554432 578999999999999998777762 4999999999999999999988762   689999999876


Q ss_pred             -CCCCCCccceEEecchhccCCCHHHHHHHHHH--hcccCcEEEEEEeCC
Q 021975          231 -LPFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLR  277 (304)
Q Consensus       231 -lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r--~LkpgG~lvi~~~~~  277 (304)
                       ++..+++||+|++...+ |..+...+++++.+  +|||||++++.....
T Consensus       115 ~~~~~~~~fD~V~~~~p~-~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          115 FLAQKGTPHNIVFVDPPF-RRGLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             HHSSCCCCEEEEEECCSS-STTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             HHhhcCCCCCEEEECCCC-CCCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence             45556789999998763 35677888999876  599999999888765

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.61  E-value=5.2e-15  Score=125.58  Aligned_cols=105  Identities=12%  Similarity=0.087  Sum_probs=81.8

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC----CCCCCccc
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVD  239 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD  239 (304)
                      ..++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+.+..+..     .++.++.+|+...    ++. ++||
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~-~~fD  128 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIV-EKVD  128 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTC-CCEE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-----CCeEEEEcCCCCchhhcccc-ccee
Confidence            45678999999999999999998854569999999999887666655432     4788999998773    444 7899


Q ss_pred             eEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +|++.. .++ .+...+++++.++|||||+|++....
T Consensus       129 ~V~~~~-~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~  163 (210)
T 1nt2_A          129 LIYQDI-AQK-NQIEILKANAEFFLKEKGEVVIMVKA  163 (210)
T ss_dssp             EEEECC-CST-THHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             EEEEec-cCh-hHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            999873 222 23345689999999999999998643

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.61  E-value=5.3e-15  Score=125.38  Aligned_cols=115  Identities=16%  Similarity=0.096  Sum_probs=94.9

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      ....+.+.+...++.+|||||||+|.++..+++.+ +..+++++|+++.+++.+++++...+   ..++.++.+|+....
T Consensus        65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~  141 (215)
T 2yxe_A           65 MVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG---YDNVIVIVGDGTLGY  141 (215)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEESCGGGCC
T ss_pred             HHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccCC
Confidence            44456666666678899999999999999999885 44699999999999999999988765   256999999985432


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..+++||+|++..+++|++      +++.++|||||++++.....
T Consensus       142 ~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          142 EPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             GGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred             CCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence            2367899999999999987      48899999999999988644

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.61  E-value=3.9e-15  Score=134.19  Aligned_cols=115  Identities=14%  Similarity=0.140  Sum_probs=97.1

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ...+.+.+.+...++.+|||||||+|.++..+++.++ ..+|+|+|+++.+++.|+++++..+.   .++.++.+|+.+.
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~---~~v~~~~~d~~~~  138 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI---ENVIFVCGDGYYG  138 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGGC
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCeEEEECChhhc
Confidence            3445666667777788999999999999999998865 35799999999999999999987762   5699999999875


Q ss_pred             CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +..+++||+|++..+++|+.      +++.++|||||++++....
T Consensus       139 ~~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          139 VPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             CGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred             cccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence            54567899999999999987      5788999999999998643

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.61  E-value=2.3e-15  Score=124.43  Aligned_cols=126  Identities=15%  Similarity=0.143  Sum_probs=98.8

Q ss_pred             CCcHHHHHHHHHhhcc-cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975          149 PGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (304)
                      +..+...+.+.+.+.. .++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.|+++++..+  ...++.++++|
T Consensus        26 p~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d  102 (187)
T 2fhp_A           26 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITK--EPEKFEVRKMD  102 (187)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESC
T ss_pred             cCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhC--CCcceEEEECc
Confidence            3344555566666643 467899999999999999888764 4599999999999999999998776  34579999999


Q ss_pred             CCCCC----CCCCccceEEecchhccCCCHHHHHHHH--HHhcccCcEEEEEEeCCC
Q 021975          228 VCRLP----FASGFVDAVHAGAALHCWPSPSNAVAEI--SRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       228 ~~~lp----~~~~~fD~V~~~~vl~h~~d~~~~l~~~--~r~LkpgG~lvi~~~~~~  278 (304)
                      +.+..    +.+++||+|++...++ ..+....++.+  .++|||||++++.+....
T Consensus       103 ~~~~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          103 ANRALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             HHHHHHHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            86632    2267899999987744 45677778888  888999999999887663

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.61  E-value=5.8e-15  Score=126.53  Aligned_cols=112  Identities=16%  Similarity=0.147  Sum_probs=94.0

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.+++++...+     ++.++.+|+....
T Consensus        57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~-----~v~~~~~d~~~~~  129 (231)
T 1vbf_A           57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYYN-----NIKLILGDGTLGY  129 (231)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTCS-----SEEEEESCGGGCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcC--EEEEEeCCHHHHHHHHHHHhhcC-----CeEEEECCccccc
Confidence            3445666666666788999999999999999999874  99999999999999999876532     7999999997633


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..+++||+|++..+++|+.      .++.++|||||++++.+...
T Consensus       130 ~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          130 EEEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             GGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred             ccCCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence            3467899999999999986      36899999999999988654

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.61  E-value=8e-15  Score=129.36  Aligned_cols=121  Identities=17%  Similarity=0.199  Sum_probs=101.5

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhc-CccCCCCeEEEEccC
Q 021975          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADV  228 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~  228 (304)
                      .......+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|+++++.. +. ...++.++.+|+
T Consensus        84 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~-~~~~v~~~~~d~  162 (280)
T 1i9g_A           84 YPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ-PPDNWRLVVSDL  162 (280)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS-CCTTEEEECSCG
T ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-CCCcEEEEECch
Confidence            3445556666777777889999999999999999985 55679999999999999999998765 20 136799999999


Q ss_pred             CCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .+.++++++||+|++     +++++..+++++.++|||||++++.++..
T Consensus       163 ~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  206 (280)
T 1i9g_A          163 ADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATV  206 (280)
T ss_dssp             GGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             HhcCCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            888777889999998     56788899999999999999999988753

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.61  E-value=9.4e-16  Score=124.87  Aligned_cols=120  Identities=16%  Similarity=0.188  Sum_probs=94.7

Q ss_pred             cHHHHHHHHHhhccc--CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975          151 PDEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (304)
                      .....+.+...+...  ++.+|||+|||+|.++..+++.++  +++|+|+++.+++.++++++..+    .++.++++|+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~d~   97 (171)
T 1ws6_A           24 PVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTG----LGARVVALPV   97 (171)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHT----CCCEEECSCH
T ss_pred             HHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHcC----CceEEEeccH
Confidence            344444555555432  578999999999999999999987  69999999999999999998776    2799999998


Q ss_pred             CCC-C-CC--CCccceEEecchhccCCCHHHHHHHHH--HhcccCcEEEEEEeCCC
Q 021975          229 CRL-P-FA--SGFVDAVHAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTFLRY  278 (304)
Q Consensus       229 ~~l-p-~~--~~~fD~V~~~~vl~h~~d~~~~l~~~~--r~LkpgG~lvi~~~~~~  278 (304)
                      .+. + ..  .++||+|++..+++  .+...+++.+.  ++|||||++++.+....
T Consensus        98 ~~~~~~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A           98 EVFLPEAKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred             HHHHHhhhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence            763 2 11  24799999987765  55666777777  99999999999887653

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.61  E-value=3.7e-15  Score=128.30  Aligned_cols=120  Identities=11%  Similarity=0.192  Sum_probs=98.0

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ....+.+...+...++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++++..+  ...++.++.+|+.+.
T Consensus        57 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~  134 (232)
T 3ntv_A           57 RLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH--FENQVRIIEGNALEQ  134 (232)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCGGGC
T ss_pred             HHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECCHHHH
Confidence            344455666666567889999999999999999997667799999999999999999998877  346899999999663


Q ss_pred             -C-CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          232 -P-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       232 -p-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                       + ..+++||+|++...   ..+...+++++.++|||||+|++....
T Consensus       135 ~~~~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d~~~  178 (232)
T 3ntv_A          135 FENVNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITDNVL  178 (232)
T ss_dssp             HHHHTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred             HHhhccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence             3 33679999998653   446778999999999999999885543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.61  E-value=6.4e-15  Score=124.03  Aligned_cols=113  Identities=19%  Similarity=0.180  Sum_probs=93.3

Q ss_pred             HHHHHHhhccc---CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          155 FKMAQEYFKSA---QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       155 ~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      .+.+.+.+...   ++.+|||+|||+|.++..++...+..+++|+|+++.+++.++++.+..+   ..++.++.+|+.+.
T Consensus        51 ~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~  127 (207)
T 1jsx_A           51 VRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK---LENIEPVQSRVEEF  127 (207)
T ss_dssp             HHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEECCTTTS
T ss_pred             HHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEecchhhC
Confidence            44444444322   3779999999999999999998667799999999999999999988776   24599999999887


Q ss_pred             CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      + +.++||+|++..    +.++..+++++.++|||||++++...
T Consensus       128 ~-~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          128 P-SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             C-CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             C-ccCCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            6 457899999854    35678999999999999999998864

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.61  E-value=1.8e-15  Score=129.14  Aligned_cols=122  Identities=9%  Similarity=0.166  Sum_probs=97.9

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-  230 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-  230 (304)
                      ...+++...+...++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|+++++..+  ...++.++.+|+.+ 
T Consensus        45 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~  122 (221)
T 3u81_A           45 AKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG--LQDKVTILNGASQDL  122 (221)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC--CCCceEEEECCHHHH
Confidence            344455555555567899999999999999999863 35699999999999999999998877  34579999999754 


Q ss_pred             CCC-C----CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          231 LPF-A----SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       231 lp~-~----~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++. .    .++||+|++....++..+...+++++ ++|||||+|++.+...
T Consensus       123 l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~  173 (221)
T 3u81_A          123 IPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIV  173 (221)
T ss_dssp             GGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred             HHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence            332 1    26899999998888877666788888 9999999999877654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.61  E-value=1.5e-14  Score=123.87  Aligned_cols=108  Identities=18%  Similarity=0.198  Sum_probs=89.0

Q ss_pred             cCCCeEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-CCCCCccceEE
Q 021975          165 AQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVH  242 (304)
Q Consensus       165 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~  242 (304)
                      .++.+|||+||| +|.++..+++.. ..+|+|+|+++.+++.|+++++..+    .++.++++|+..+ ++++++||+|+
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~~~fD~I~  128 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNN----SNVRLVKSNGGIIKGVVEGTFDVIF  128 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTT----CCCEEEECSSCSSTTTCCSCEEEEE
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEeCCchhhhhcccCceeEEE
Confidence            467899999999 999999999984 3499999999999999999998876    3899999997433 45578999999


Q ss_pred             ecchhccCCC-------------------HHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          243 AGAALHCWPS-------------------PSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       243 ~~~vl~h~~d-------------------~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +...+++..+                   ...+++++.++|||||++++..+..
T Consensus       129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (230)
T 3evz_A          129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK  182 (230)
T ss_dssp             ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred             ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence            9866655433                   3678999999999999999987654

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.61  E-value=3.1e-15  Score=136.48  Aligned_cols=114  Identities=15%  Similarity=0.144  Sum_probs=91.0

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCc
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (304)
                      +.+.+...++.+|||||||+|.++..+++.++..+++++|+ +.++.  +++.+..+  ...++.++.+|+. .+++  +
T Consensus       176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~--~~~~v~~~~~d~~-~~~p--~  247 (348)
T 3lst_A          176 LARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPD--VAGRWKVVEGDFL-REVP--H  247 (348)
T ss_dssp             HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGG--GTTSEEEEECCTT-TCCC--C
T ss_pred             HHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccC--CCCCeEEEecCCC-CCCC--C
Confidence            33344445677999999999999999999988889999999 44444  33322222  3467999999996 3444  8


Q ss_pred             cceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          238 VDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      ||+|++.+++||++++  ..+|++++++|||||+|++.++....
T Consensus       248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~  291 (348)
T 3lst_A          248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPE  291 (348)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred             CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            9999999999999988  58999999999999999999976543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.60  E-value=9.2e-15  Score=132.37  Aligned_cols=111  Identities=18%  Similarity=0.293  Sum_probs=93.3

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCc
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (304)
                      +.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|++ .+++.|+++++.++  ...++.++.+|+.++++++++
T Consensus        30 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~~vD~s-~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~  105 (328)
T 1g6q_1           30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMS-SIIEMAKELVELNG--FSDKITLLRGKLEDVHLPFPK  105 (328)
T ss_dssp             HHHHHHHHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESS-THHHHHHHHHHHTT--CTTTEEEEESCTTTSCCSSSC
T ss_pred             HHhhHhhcCCCEEEEecCccHHHHHHHHHCC-CCEEEEEChH-HHHHHHHHHHHHcC--CCCCEEEEECchhhccCCCCc
Confidence            3333444567899999999999999999875 3599999999 59999999998877  456799999999998888789


Q ss_pred             cceEEecc---hhccCCCHHHHHHHHHHhcccCcEEEE
Q 021975          238 VDAVHAGA---ALHCWPSPSNAVAEISRILRSGGVFVG  272 (304)
Q Consensus       238 fD~V~~~~---vl~h~~d~~~~l~~~~r~LkpgG~lvi  272 (304)
                      ||+|++..   .+.|..++..++.++.++|||||+++.
T Consensus       106 ~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          106 VDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             EEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            99999874   455667788999999999999999873

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.60  E-value=5.7e-15  Score=124.33  Aligned_cols=104  Identities=17%  Similarity=0.199  Sum_probs=89.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.|+++++..+.   .++.++.+|+.+.+  +++||+|++.
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~--~~~fD~i~~~  132 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLG-AKSVLATDISDESMTAAEENAALNGI---YDIALQKTSLLADV--DGKFDLIVAN  132 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTC---CCCEEEESSTTTTC--CSCEEEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEeccccccC--CCCceEEEEC
Confidence            357899999999999999988864 46999999999999999999988762   34999999997753  5899999999


Q ss_pred             chhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .+++++   ..+++++.++|||||++++.++..
T Consensus       133 ~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~  162 (205)
T 3grz_A          133 ILAEIL---LDLIPQLDSHLNEDGQVIFSGIDY  162 (205)
T ss_dssp             SCHHHH---HHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred             CcHHHH---HHHHHHHHHhcCCCCEEEEEecCc
Confidence            888874   788999999999999999987654

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.60  E-value=4.3e-15  Score=129.99  Aligned_cols=116  Identities=11%  Similarity=0.246  Sum_probs=93.8

Q ss_pred             HHHHhhccc-CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--C
Q 021975          157 MAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F  233 (304)
Q Consensus       157 ~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~  233 (304)
                      ++..+.... ++.+|||+|||+|.++..+++.++ .+|+|+|+++.+++.|+++++..+  ...++.++++|+.+++  +
T Consensus        39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~--~~~~v~~~~~D~~~~~~~~  115 (259)
T 3lpm_A           39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQ--LEDQIEIIEYDLKKITDLI  115 (259)
T ss_dssp             HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTT--CTTTEEEECSCGGGGGGTS
T ss_pred             HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCC--CcccEEEEECcHHHhhhhh
Confidence            445555555 688999999999999999999864 399999999999999999999887  4567999999998865  5


Q ss_pred             CCCccceEEecchhccC-----C---------------CHHHHHHHHHHhcccCcEEEEEEe
Q 021975          234 ASGFVDAVHAGAALHCW-----P---------------SPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~-----~---------------d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ++++||+|+++-.+.+.     .               +...+++++.++|||||++++...
T Consensus       116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  177 (259)
T 3lpm_A          116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR  177 (259)
T ss_dssp             CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence            57899999996443322     1               235689999999999999999654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.59  E-value=1.2e-14  Score=128.23  Aligned_cols=118  Identities=19%  Similarity=0.268  Sum_probs=100.3

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC
Q 021975          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (304)
                      .......+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|+++++..+  ...++.++.+|+.
T Consensus        97 ~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~  174 (277)
T 1o54_A           97 YPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTIKVRDIS  174 (277)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--CGGGEEEECCCGG
T ss_pred             CHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCHH
Confidence            3344556667777777889999999999999999998 666799999999999999999988776  3357999999997


Q ss_pred             CCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +. +++++||+|++     +.+++..+++++.++|||||++++.++.
T Consensus       175 ~~-~~~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (277)
T 1o54_A          175 EG-FDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPT  215 (277)
T ss_dssp             GC-CSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             Hc-ccCCccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            75 56678999998     4578889999999999999999998864

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.59  E-value=1.1e-16  Score=138.28  Aligned_cols=116  Identities=16%  Similarity=0.154  Sum_probs=95.6

Q ss_pred             HHHHHHHhhc-ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          154 EFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       154 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      ..+.+...+. ..++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.|+++++..+  ...++.++++|+.+++
T Consensus        65 ~~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~~--~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~  140 (241)
T 3gdh_A           65 IAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGM--RVIAIDIDPVKIALARNNAEVYG--IADKIEFICGDFLLLA  140 (241)
T ss_dssp             HHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHG
T ss_pred             HHHHHHHHhhhccCCCEEEECccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcC--CCcCeEEEECChHHhc
Confidence            3444444433 23678999999999999999999874  99999999999999999998876  3358999999998876


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                       ++++||+|++..+++|..++...+.++.++|||||++++..
T Consensus       141 -~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          141 -SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             -GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             -ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence             56799999999999998877767778888889998866654

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.59  E-value=3.5e-15  Score=127.84  Aligned_cols=91  Identities=14%  Similarity=0.277  Sum_probs=81.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC-CCCCCC-CCccceEE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFA-SGFVDAVH  242 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~-~~~fD~V~  242 (304)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.++++        ..++.++++|+ ..+|++ +++||+|+
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~~~fD~v~  116 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA--RWAAYDFSPELLKLARAN--------APHADVYEWNGKGELPAGLGAPFGLIV  116 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHH--------CTTSEEEECCSCSSCCTTCCCCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHh--------CCCceEEEcchhhccCCcCCCCEEEEE
Confidence            3578999999999999999999865  999999999999999986        25799999999 678887 88999999


Q ss_pred             ecchhccCCCHHHHHHHHHHhcccCcEEE
Q 021975          243 AGAALHCWPSPSNAVAEISRILRSGGVFV  271 (304)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lv  271 (304)
                      +.      .++..+++++.++|||||+++
T Consensus       117 ~~------~~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          117 SR------RGPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             EE------SCCSGGGGGHHHHEEEEEEEE
T ss_pred             eC------CCHHHHHHHHHHHcCCCcEEE
Confidence            97      477788999999999999999

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.59  E-value=5.5e-15  Score=136.31  Aligned_cols=115  Identities=18%  Similarity=0.225  Sum_probs=95.5

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (304)
                      .+.......++.+|||||||+|.++..+++.+ ..+|+|+|+| .+++.|+++++.++  ...++.++++|+.+++++ +
T Consensus        54 ~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~-~  128 (376)
T 3r0q_C           54 AVFQNKHHFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVKANN--LDHIVEVIEGSVEDISLP-E  128 (376)
T ss_dssp             HHHTTTTTTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHHHTT--CTTTEEEEESCGGGCCCS-S
T ss_pred             HHHhccccCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHHHcC--CCCeEEEEECchhhcCcC-C
Confidence            34444455678899999999999999999986 3599999999 99999999999887  456799999999998876 8


Q ss_pred             ccceEEecchhccC---CCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          237 FVDAVHAGAALHCW---PSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       237 ~fD~V~~~~vl~h~---~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +||+|++..+.+++   .++..++.++.++|||||++++....
T Consensus       129 ~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          129 KVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             CEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             cceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            89999996544443   56888999999999999999875543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.59  E-value=9.2e-15  Score=126.88  Aligned_cols=102  Identities=20%  Similarity=0.350  Sum_probs=87.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--------CccCCCCeEEEEccCCC-CC--CC
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--------NTILTSNLALVRADVCR-LP--FA  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------~~~~~~~i~~~~~d~~~-lp--~~  234 (304)
                      ++.+|||||||+|.++..+++.++..+|+|+|+|+.+++.++++++..        +   ..++.++.+|+.+ ++  ++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~---~~nv~~~~~D~~~~l~~~~~  125 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHG---FQNINVLRGNAMKFLPNFFE  125 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCST---TTTEEEEECCTTSCGGGTSC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccC---CCcEEEEeccHHHHHHHhcc
Confidence            567899999999999999999987779999999999999999988764        4   2579999999986 55  66


Q ss_pred             CCccceEEecchhccCCCH-------------HHHHHHHHHhcccCcEEEEEEe
Q 021975          235 SGFVDAVHAGAALHCWPSP-------------SNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~-------------~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .+++|.|+..     ++++             ..+++++.++|||||+|++.+.
T Consensus       126 ~~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td  174 (246)
T 2vdv_E          126 KGQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD  174 (246)
T ss_dssp             TTCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ccccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence            7899998854     3555             4799999999999999999763

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.59  E-value=1.3e-14  Score=124.60  Aligned_cols=120  Identities=17%  Similarity=0.199  Sum_probs=99.3

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ......+...+...++.+|||+|||+|.++..+++..+..+|+++|+++.+++.|+++++..+  ...++.++.+|+...
T Consensus        40 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~  117 (233)
T 2gpy_A           40 LLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG--LESRIELLFGDALQL  117 (233)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCGGGS
T ss_pred             HHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECCHHHH
Confidence            444556666666667889999999999999999998766799999999999999999998876  345799999998764


Q ss_pred             -CCC--CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          232 -PFA--SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       232 -p~~--~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                       +..  +++||+|++....+   +...+++++.++|||||++++.+..
T Consensus       118 ~~~~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~  162 (233)
T 2gpy_A          118 GEKLELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPGGLILSDNVL  162 (233)
T ss_dssp             HHHHTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred             HHhcccCCCccEEEECCCHH---HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence             322  57899999987754   7788999999999999999997543

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.59  E-value=3.3e-15  Score=136.15  Aligned_cols=120  Identities=18%  Similarity=0.229  Sum_probs=100.2

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      +...+.+.+.+...++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.++++++..+    ..+.++.+|+...
T Consensus       182 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~----~~~~~~~~d~~~~  257 (343)
T 2pjd_A          182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG----VEGEVFASNVFSE  257 (343)
T ss_dssp             CHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTT----CCCEEEECSTTTT
T ss_pred             cHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCEEEEcccccc
Confidence            344566666665555779999999999999999999877799999999999999999998766    3467889998765


Q ss_pred             CCCCCccceEEecchhcc-----CCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          232 PFASGFVDAVHAGAALHC-----WPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h-----~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +  +++||+|+++.++|+     ..+...+++++.++|||||.+++.....
T Consensus       258 ~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          258 V--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             C--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             c--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence            4  678999999998875     3456789999999999999999988654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.58  E-value=9.4e-15  Score=127.11  Aligned_cols=121  Identities=12%  Similarity=0.143  Sum_probs=96.1

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      .....++.......++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++..+  ...++.++.+|+.+
T Consensus        49 ~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~  126 (248)
T 3tfw_A           49 ANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG--VDQRVTLREGPALQ  126 (248)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCHHH
T ss_pred             HHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHH
Confidence            33344444444555678999999999999999999855 6799999999999999999998877  45689999999865


Q ss_pred             -CCCC--CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          231 -LPFA--SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       231 -lp~~--~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                       ++..  .++||+|++...   ..+...+++++.++|||||+|++.+...
T Consensus       127 ~l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~  173 (248)
T 3tfw_A          127 SLESLGECPAFDLIFIDAD---KPNNPHYLRWALRYSRPGTLIIGDNVVR  173 (248)
T ss_dssp             HHHTCCSCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred             HHHhcCCCCCeEEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence             3322  348999998653   3356778999999999999999877654

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.58  E-value=1.1e-14  Score=127.60  Aligned_cols=118  Identities=14%  Similarity=0.106  Sum_probs=94.9

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh---cCccCCCCeEEEEccCCCC--
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---DNTILTSNLALVRADVCRL--  231 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~i~~~~~d~~~l--  231 (304)
                      ++..++...++.+|||+|||+|.++..++..++..+++|+|+++.+++.|+++++.   .+  ...++.++++|+.+.  
T Consensus        27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~--l~~~v~~~~~D~~~~~~  104 (260)
T 2ozv_A           27 LLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA--FSARIEVLEADVTLRAK  104 (260)
T ss_dssp             HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTT--TGGGEEEEECCTTCCHH
T ss_pred             HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCC--CcceEEEEeCCHHHHhh
Confidence            34455555567899999999999999999998777999999999999999999887   65  334699999999886  


Q ss_pred             -----CCCCCccceEEecchhcc------------------CCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          232 -----PFASGFVDAVHAGAALHC------------------WPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       232 -----p~~~~~fD~V~~~~vl~h------------------~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                           ++++++||+|+++-.+..                  ..+...+++++.++|||||+|++....
T Consensus       105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  172 (260)
T 2ozv_A          105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP  172 (260)
T ss_dssp             HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence                 256789999999732221                  124678899999999999999987643

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.58  E-value=3.6e-15  Score=129.68  Aligned_cols=118  Identities=19%  Similarity=0.125  Sum_probs=88.7

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhc---CccCCCC------------
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQD---NTILTSN------------  220 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~------------  220 (304)
                      +...+...++.+|||+|||+|.++..+++.  .+..+|+|+|+|+.+++.|++++...   +.  ..+            
T Consensus        43 ~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~  120 (250)
T 1o9g_A           43 ALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL--TARELERREQSERFG  120 (250)
T ss_dssp             HHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH--HHHHHHHHHHHHHHC
T ss_pred             HHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc--cccchhhhhhhhhcc
Confidence            333333335679999999999999999887  44459999999999999999887654   21  111            


Q ss_pred             -------------eE-------------EEEccCCCCCC-----CCCccceEEecchhccCCC---------HHHHHHHH
Q 021975          221 -------------LA-------------LVRADVCRLPF-----ASGFVDAVHAGAALHCWPS---------PSNAVAEI  260 (304)
Q Consensus       221 -------------i~-------------~~~~d~~~lp~-----~~~~fD~V~~~~vl~h~~d---------~~~~l~~~  260 (304)
                                   +.             ++++|+.+...     ...+||+|+++..+.+..+         ...+++++
T Consensus       121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~  200 (250)
T 1o9g_A          121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL  200 (250)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence                         55             99999877421     3458999999876665543         34789999


Q ss_pred             HHhcccCcEEEEEEeCC
Q 021975          261 SRILRSGGVFVGTTFLR  277 (304)
Q Consensus       261 ~r~LkpgG~lvi~~~~~  277 (304)
                      .++|||||+++++....
T Consensus       201 ~~~LkpgG~l~~~~~~~  217 (250)
T 1o9g_A          201 ASALPAHAVIAVTDRSR  217 (250)
T ss_dssp             HHHSCTTCEEEEEESSS
T ss_pred             HHhcCCCcEEEEeCcch
Confidence            99999999999955443

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.58  E-value=6.8e-15  Score=135.47  Aligned_cols=101  Identities=19%  Similarity=0.218  Sum_probs=89.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .+..+|||||||+|.++..+++.++..+++++|+ +.+++.+++         ..++.++.+|+.+ +++.  ||+|++.
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~~--~D~v~~~  274 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP---------LSGIEHVGGDMFA-SVPQ--GDAMILK  274 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCC--EEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh---------cCCCEEEeCCccc-CCCC--CCEEEEe
Confidence            4567999999999999999999988889999999 888877764         2569999999987 6654  9999999


Q ss_pred             chhccCCCHH--HHHHHHHHhcccCcEEEEEEeCCC
Q 021975          245 AALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       245 ~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++|||++++.  .+|++++++|||||+|++.++..+
T Consensus       275 ~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~  310 (372)
T 1fp1_D          275 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP  310 (372)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             cccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            9999999998  999999999999999999987653

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.58  E-value=2e-14  Score=126.83  Aligned_cols=119  Identities=13%  Similarity=0.155  Sum_probs=95.8

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      +.+.+.+.+.+. .++.+|||+|||+|.++..++...+..+++|+|+|+.+++.++++.+..+.   .++.++++|+...
T Consensus        96 e~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~v~~~~~d~~~~  171 (276)
T 2b3t_A           96 ECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDWFSA  171 (276)
T ss_dssp             HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCSTTGG
T ss_pred             HHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEEcchhhh
Confidence            344455555554 457799999999999999999886677999999999999999999988762   4799999999763


Q ss_pred             CCCCCccceEEec-------------chhccCC------------CHHHHHHHHHHhcccCcEEEEEEe
Q 021975          232 PFASGFVDAVHAG-------------AALHCWP------------SPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       232 p~~~~~fD~V~~~-------------~vl~h~~------------d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                       +++++||+|+++             .+++|.+            +...+++++.++|||||++++...
T Consensus       172 -~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~  239 (276)
T 2b3t_A          172 -LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG  239 (276)
T ss_dssp             -GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             -cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence             446789999997             3555544            346789999999999999998753

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.58  E-value=1.2e-14  Score=119.03  Aligned_cols=105  Identities=15%  Similarity=0.176  Sum_probs=87.3

Q ss_pred             HHHHHhhcc--cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          156 KMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       156 ~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      +.+.+.+..  .++.+|||+|||+|.++..+++.+   +|+|+|+|+.+++.        .    .++.++++|+.+ ++
T Consensus        11 ~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~--------~----~~~~~~~~d~~~-~~   74 (170)
T 3q87_B           11 YTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES--------H----RGGNLVRADLLC-SI   74 (170)
T ss_dssp             HHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT--------C----SSSCEEECSTTT-TB
T ss_pred             HHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc--------c----cCCeEEECChhh-hc
Confidence            344444444  567799999999999999999987   99999999999987        1    468899999987 66


Q ss_pred             CCCccceEEecchhccCCCH---------HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          234 ASGFVDAVHAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~---------~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++++||+|+++..+++.++.         ..+++++.+.| |||++++.+...
T Consensus        75 ~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~  126 (170)
T 3q87_B           75 NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA  126 (170)
T ss_dssp             CGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG
T ss_pred             ccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC
Confidence            67899999999888877655         57889999999 999999988654

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.57  E-value=7.1e-15  Score=128.03  Aligned_cols=104  Identities=13%  Similarity=-0.007  Sum_probs=90.5

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC---CCccceE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV  241 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V  241 (304)
                      .++.+|||||||+|..+..++...+..+|+++|+++.+++.++++.+..++   .++.++++|+++++..   .++||+|
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l---~~v~~~~~d~~~~~~~~~~~~~fD~I  155 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL---KGARALWGRAEVLAREAGHREAYARA  155 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEECCHHHHTTSTTTTTCEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC---CceEEEECcHHHhhcccccCCCceEE
Confidence            357899999999999999999887778999999999999999999988873   4699999999887643   4789999


Q ss_pred             EecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ++..    +.+...+++.+.++|||||++++..-
T Consensus       156 ~s~a----~~~~~~ll~~~~~~LkpgG~l~~~~g  185 (249)
T 3g89_A          156 VARA----VAPLCVLSELLLPFLEVGGAAVAMKG  185 (249)
T ss_dssp             EEES----SCCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             EECC----cCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9965    35778899999999999999998763

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.57  E-value=5.6e-16  Score=130.73  Aligned_cols=116  Identities=18%  Similarity=0.115  Sum_probs=73.7

Q ss_pred             HHHHHHhhcc-cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          155 FKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       155 ~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      .+.+.+.+.. .++.+|||+|||+|.++..+++.++..+++|+|+++.+++.+++++...+    .++.++++|+.+ ++
T Consensus        18 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~-~~   92 (215)
T 4dzr_A           18 VEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG----AVVDWAAADGIE-WL   92 (215)
T ss_dssp             HHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-----------------------CCHHHHHH-HH
T ss_pred             HHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC----CceEEEEcchHh-hh
Confidence            3445555544 56789999999999999999999777799999999999999999887765    278899999877 55


Q ss_pred             CC-----CccceEEecchhc------cCCCH--------------------HHHHHHHHHhcccCcEEEEEEe
Q 021975          234 AS-----GFVDAVHAGAALH------CWPSP--------------------SNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       234 ~~-----~~fD~V~~~~vl~------h~~d~--------------------~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ++     ++||+|+++..++      |+...                    ..+++++.++|||||++++.+.
T Consensus        93 ~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  165 (215)
T 4dzr_A           93 IERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV  165 (215)
T ss_dssp             HHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred             hhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            55     8999999964433      22211                    6788999999999999555444

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.57  E-value=1.4e-14  Score=124.74  Aligned_cols=114  Identities=14%  Similarity=0.140  Sum_probs=93.9

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      .....+.+.+...++.+|||||||+|.++..+++.++ .+|+++|+++.+++.|+++++..+   ..++.++.+|+ ..+
T Consensus        78 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~-~~~  152 (235)
T 1jg1_A           78 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG---VKNVHVILGDG-SKG  152 (235)
T ss_dssp             HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCG-GGC
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEECCc-ccC
Confidence            3445566666666788999999999999999999874 599999999999999999988776   25699999997 334


Q ss_pred             CCCC-ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 FASG-FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 ~~~~-~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++. .||+|++..++++++      +++.+.|||||++++.....
T Consensus       153 ~~~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          153 FPPKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             CGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred             CCCCCCccEEEECCcHHHHH------HHHHHhcCCCcEEEEEEecC
Confidence            4443 599999999999886      37889999999999988654

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.57  E-value=1.1e-14  Score=128.39  Aligned_cols=109  Identities=13%  Similarity=0.213  Sum_probs=84.5

Q ss_pred             CCCeEEEEcCCccH----HHHHHHHh-CC---CCeEEEEeCCHHHHHHHHHHHHhc----------------------C-
Q 021975          166 QGGLLVDVSCGSGL----FSRKFAKS-GT---YSGVVALDFSENMLRQCYDFIKQD----------------------N-  214 (304)
Q Consensus       166 ~~~~vLDiGcG~G~----~~~~l~~~-~~---~~~v~giD~s~~~~~~a~~~~~~~----------------------~-  214 (304)
                      ++.+|||+|||+|.    ++..+++. +.   ..+|+|+|+|+.+++.|++.....                      + 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35689999999998    44445554 21   248999999999999999864100                      0 


Q ss_pred             cc-----CCCCeEEEEccCCCCCCC-CCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEE
Q 021975          215 TI-----LTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       215 ~~-----~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ..     ...++.|.++|+.+.|++ .+.||+|+|.+|++|+.++  .++++++++.|||||+|++..
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            00     013699999999886665 5789999999999999766  689999999999999998843

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.57  E-value=1.4e-14  Score=132.22  Aligned_cols=114  Identities=19%  Similarity=0.278  Sum_probs=95.2

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+++ +++.|+++++.++  ...++.++.+|+.+++++ 
T Consensus        40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~~~-  114 (348)
T 2y1w_A           40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNN--LTDRIVVIPGKVEEVSLP-  114 (348)
T ss_dssp             HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHTT--CTTTEEEEESCTTTCCCS-
T ss_pred             HHHHhccccCCcCEEEEcCCCccHHHHHHHhCC-CCEEEEECCHH-HHHHHHHHHHHcC--CCCcEEEEEcchhhCCCC-
Confidence            445555555678899999999999999999875 46999999996 8899999988877  457899999999988765 


Q ss_pred             CccceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEE
Q 021975          236 GFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ++||+|++..+++|+.  +....+.++.++|||||++++..
T Consensus       115 ~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          115 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence            5899999998888875  34578889999999999998643

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.57  E-value=1.3e-14  Score=124.17  Aligned_cols=105  Identities=14%  Similarity=0.157  Sum_probs=87.5

Q ss_pred             CCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCC-CCeEEEEccCCCC-C-CCCCccceEE
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRADVCRL-P-FASGFVDAVH  242 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~-~~i~~~~~d~~~l-p-~~~~~fD~V~  242 (304)
                      +.+|||||||+|..+..+++.. ++.+|+++|+++.+++.|+++++..+  .. .++.++.+|+.+. + +++++||+|+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~~i~~~~gda~~~l~~~~~~~fD~V~  134 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG--YSPSRVRFLLSRPLDVMSRLANDSYQLVF  134 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCcCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence            3499999999999999999874 36799999999999999999999887  34 5899999998653 2 3368999999


Q ss_pred             ecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +....   .+...+++++.++|||||++++....
T Consensus       135 ~d~~~---~~~~~~l~~~~~~LkpGG~lv~dn~~  165 (221)
T 3dr5_A          135 GQVSP---MDLKALVDAAWPLLRRGGALVLADAL  165 (221)
T ss_dssp             ECCCT---TTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred             EcCcH---HHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            87543   45677899999999999999986544

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.57  E-value=1.7e-14  Score=132.64  Aligned_cols=102  Identities=15%  Similarity=0.212  Sum_probs=89.0

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      ..+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++         ..++.++.+|+.+ +++++  |+|++
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p~~--D~v~~  267 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA---------FSGVEHLGGDMFD-GVPKG--DAIFI  267 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCCC--SEEEE
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh---------cCCCEEEecCCCC-CCCCC--CEEEE
Confidence            34567999999999999999999988889999999 888877654         2689999999987 66654  99999


Q ss_pred             cchhccCCCHH--HHHHHHHHhcccCcEEEEEEeCCC
Q 021975          244 GAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       244 ~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      .++|||++++.  .+|++++++|||||+|++.+....
T Consensus       268 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  304 (368)
T 3reo_A          268 KWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILP  304 (368)
T ss_dssp             ESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred             echhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            99999998775  789999999999999999997754

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.57  E-value=1.9e-14  Score=127.36  Aligned_cols=112  Identities=16%  Similarity=0.193  Sum_probs=93.7

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      ..+...+.  ++.+|||+|||+|.++..+++.+.. +|+|+|+|+.+++.|+++++.++  ...++.++++|+.+++. +
T Consensus       117 ~~l~~~~~--~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~--~~~~v~~~~~D~~~~~~-~  190 (278)
T 2frn_A          117 VRMAKVAK--PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNK--VEDRMSAYNMDNRDFPG-E  190 (278)
T ss_dssp             HHHHHHCC--TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCTTTCCC-C
T ss_pred             HHHHHhCC--CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcC--CCceEEEEECCHHHhcc-c
Confidence            33444433  4789999999999999999999763 79999999999999999999887  34569999999998876 7


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++||+|++...    .+...++.++.++|||||++++.++..
T Consensus       191 ~~fD~Vi~~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          191 NIADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             SCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCccEEEECCc----hhHHHHHHHHHHHCCCCeEEEEEEeec
Confidence            79999998543    345678999999999999999988764

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.56  E-value=3.9e-14  Score=120.97  Aligned_cols=107  Identities=23%  Similarity=0.351  Sum_probs=88.8

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCc--cCCCCeEEEEccCCCCCCCCCccce
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVCRLPFASGFVDA  240 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~  240 (304)
                      ..++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.++++++..+.  ....++.++.+|+...+..+++||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            456789999999999999999987 4556999999999999999998876531  0035799999998766555678999


Q ss_pred             EEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      |++..+++++.      +++.++|||||++++.+..
T Consensus       155 i~~~~~~~~~~------~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          155 IHVGAAAPVVP------QALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEECSBBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred             EEECCchHHHH------HHHHHhcCCCcEEEEEEec
Confidence            99999888764      6889999999999998754

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.56  E-value=6.9e-14  Score=120.87  Aligned_cols=116  Identities=13%  Similarity=0.123  Sum_probs=98.1

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ......+...+...++.+|||+|||+|.++..+++.+  .+++++|+++.+++.|+++.+..+  ...++.++.+|+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~  152 (248)
T 2yvl_A           77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVA--GEVWTFEAVEEFYKTAQKNLKKFN--LGKNVKFFNVDFKDA  152 (248)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHHHHTT--CCTTEEEECSCTTTS
T ss_pred             chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHcC--CCCcEEEEEcChhhc
Confidence            3444566667776778899999999999999999884  499999999999999999988776  346899999999875


Q ss_pred             CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .+++++||+|++     +.+++..+++++.++|||||++++.++.
T Consensus       153 ~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          153 EVPEGIFHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             CCCTTCBSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             ccCCCcccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            435678999997     4568888999999999999999999875

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.56  E-value=2e-14  Score=133.94  Aligned_cols=123  Identities=11%  Similarity=0.025  Sum_probs=96.2

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHH-------HHHHHhcCccCCCCeEEEE
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-------YDFIKQDNTILTSNLALVR  225 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a-------~~~~~~~~~~~~~~i~~~~  225 (304)
                      .....+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+++.+++.|       +++++..+. ...++.++.
T Consensus       229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl-~~~nV~~i~  307 (433)
T 1u2z_A          229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGM-RLNNVEFSL  307 (433)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTB-CCCCEEEEE
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCC-CCCceEEEE
Confidence            444556666666778899999999999999999875445899999999999988       888877651 026899999


Q ss_pred             ccCCCC--CC--CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          226 ADVCRL--PF--ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       226 ~d~~~l--p~--~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +|....  ++  ..++||+|+++.++ +.+++..+|+++.++|||||++++.....
T Consensus       308 gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f~  362 (433)
T 1u2z_A          308 KKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSLR  362 (433)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             cCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence            865432  22  24689999997766 44677888999999999999999986544

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.56  E-value=2.3e-14  Score=125.43  Aligned_cols=109  Identities=17%  Similarity=0.095  Sum_probs=87.1

Q ss_pred             CCCeEEEEcCCc--cHHHHHH-HHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------CCCC
Q 021975          166 QGGLLVDVSCGS--GLFSRKF-AKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FASG  236 (304)
Q Consensus       166 ~~~~vLDiGcG~--G~~~~~l-~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~~  236 (304)
                      ...+|||||||+  +.++..+ .+..+..+|+++|.|+.|++.|++++...+   ..++.++++|+.+++      ...+
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~---~~~~~~v~aD~~~~~~~l~~~~~~~  154 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP---EGRTAYVEADMLDPASILDAPELRD  154 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS---SSEEEEEECCTTCHHHHHTCHHHHT
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC---CCcEEEEEecccChhhhhccccccc
Confidence            346899999997  3344444 445677899999999999999999886532   247999999998852      1134


Q ss_pred             ccc-----eEEecchhccCCC---HHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          237 FVD-----AVHAGAALHCWPS---PSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       237 ~fD-----~V~~~~vl~h~~d---~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .||     .|+++.+|||+++   +..+++++.+.|+|||+|++++...
T Consensus       155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~  203 (277)
T 3giw_A          155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA  203 (277)
T ss_dssp             TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred             ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence            566     5889999999998   5789999999999999999998875

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.56  E-value=4.4e-15  Score=127.39  Aligned_cols=107  Identities=17%  Similarity=0.199  Sum_probs=79.5

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCC-HHHHHHH---HHHHHhcCccCCCCeEEEEccCCCCCCC-CCccc
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS-ENMLRQC---YDFIKQDNTILTSNLALVRADVCRLPFA-SGFVD  239 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s-~~~~~~a---~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD  239 (304)
                      .++.+|||||||+|.++..+++..+..+|+|+|+| +.+++.|   +++.+..+   ..++.++++|+..+|.. .+.+|
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~---~~~v~~~~~d~~~l~~~~~d~v~   99 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG---LSNVVFVIAAAESLPFELKNIAD   99 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTC---CSSEEEECCBTTBCCGGGTTCEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEcCHHHhhhhccCeEE
Confidence            35779999999999999999977667799999999 6677666   66665554   35799999999988631 13444


Q ss_pred             eEEecchh----cc-CCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          240 AVHAGAAL----HC-WPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       240 ~V~~~~vl----~h-~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      .|.+.+..    +| ..++..+++++.++|||||++++.+
T Consensus       100 ~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A          100 SISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             EEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            44443321    11 1244578999999999999999843

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.55  E-value=3.1e-14  Score=130.75  Aligned_cols=102  Identities=21%  Similarity=0.221  Sum_probs=89.0

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      ..+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++         ..++.++.+|+.+ |++.+  |+|++
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-~~p~~--D~v~~  265 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ---------FPGVTHVGGDMFK-EVPSG--DTILM  265 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCCC--SEEEE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh---------cCCeEEEeCCcCC-CCCCC--CEEEe
Confidence            34568999999999999999999988889999999 888777654         2689999999987 77654  99999


Q ss_pred             cchhccCCCHH--HHHHHHHHhcccCcEEEEEEeCCC
Q 021975          244 GAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       244 ~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      .++|||+++..  .+|++++++|||||+|++.+....
T Consensus       266 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~  302 (364)
T 3p9c_A          266 KWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILP  302 (364)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             hHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            99999998664  789999999999999999987754

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.55  E-value=2.3e-14  Score=116.74  Aligned_cols=100  Identities=21%  Similarity=0.251  Sum_probs=86.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--------CC
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA  234 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~  234 (304)
                      ..++.+|||+|||+|.++..+++. ++..+++|+|+++ +++             ..++.++.+|+.+.+        ++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~-------------~~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP-------------IVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC-------------CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc-------------cCcEEEEEcccccchhhhhhhccCC
Confidence            456789999999999999999988 5567999999998 642             146899999998876        67


Q ss_pred             CCccceEEecchhccCCCH-----------HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++||+|++..++++..+.           ..+++++.++|||||.+++.++..
T Consensus        86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            7899999999999888776           689999999999999999988765

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.55  E-value=3.4e-14  Score=121.09  Aligned_cols=121  Identities=16%  Similarity=0.128  Sum_probs=95.6

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      ......+.......++.+|||||||+|.++..+++..+ ..+++++|+++.+++.|+++++..+  ...++.++.+|+.+
T Consensus        44 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~  121 (223)
T 3duw_A           44 PTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN--LNDRVEVRTGLALD  121 (223)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHH
Confidence            34444555555556678999999999999999999855 5699999999999999999998877  34579999999865


Q ss_pred             C-C-CC---CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          231 L-P-FA---SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       231 l-p-~~---~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      . + +.   .++||+|++....+   +...+++++.++|||||++++.....
T Consensus       122 ~~~~~~~~~~~~fD~v~~d~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~~  170 (223)
T 3duw_A          122 SLQQIENEKYEPFDFIFIDADKQ---NNPAYFEWALKLSRPGTVIIGDNVVR  170 (223)
T ss_dssp             HHHHHHHTTCCCCSEEEECSCGG---GHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred             HHHHHHhcCCCCcCEEEEcCCcH---HHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            3 1 11   15799999876533   45688999999999999888876544

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.55  E-value=3.6e-14  Score=121.27  Aligned_cols=107  Identities=21%  Similarity=0.288  Sum_probs=89.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHHhcCcc--CCCCeEEEEccCCCCC----
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRLP----  232 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d~~~lp----  232 (304)
                      ..++.+|||||||+|.++..+++..     +..+|+|+|+++.+++.|+++++..+..  ...++.++.+|+....    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            4567899999999999999999875     4569999999999999999998776400  0367999999997754    


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ...++||+|++..+++|+      ++++.++|||||++++....
T Consensus       158 ~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          158 KELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred             ccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEcc
Confidence            456789999999998876      47889999999999998864

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.55  E-value=1.8e-14  Score=121.79  Aligned_cols=108  Identities=17%  Similarity=0.198  Sum_probs=89.1

Q ss_pred             hcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-CCCCCccc
Q 021975          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVD  239 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD  239 (304)
                      ....++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++..+  ...++.++.+|+.+. +..++ ||
T Consensus        52 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~-fD  128 (210)
T 3c3p_A           52 ARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG--LIDRVELQVGDPLGIAAGQRD-ID  128 (210)
T ss_dssp             HHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS--GGGGEEEEESCHHHHHTTCCS-EE
T ss_pred             HHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCceEEEEEecHHHHhccCCC-CC
Confidence            3334578999999999999999998854 6799999999999999999998776  345799999998653 44346 99


Q ss_pred             eEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +|++...   ..+...+++++.++|||||++++.+.
T Consensus       129 ~v~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          129 ILFMDCD---VFNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             EEEEETT---TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             EEEEcCC---hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence            9998743   45778899999999999999988654

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.54  E-value=1.7e-14  Score=131.85  Aligned_cols=101  Identities=17%  Similarity=0.223  Sum_probs=88.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++         ..++.++.+|+.+ ++++  ||+|++.
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p~--~D~v~~~  253 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG---------SNNLTYVGGDMFT-SIPN--ADAVLLK  253 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------BTTEEEEECCTTT-CCCC--CSEEEEE
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc---------CCCcEEEeccccC-CCCC--ccEEEee
Confidence            3567999999999999999999988789999999 999887764         1469999999976 5553  9999999


Q ss_pred             chhccCCCHH--HHHHHHHHhccc---CcEEEEEEeCCC
Q 021975          245 AALHCWPSPS--NAVAEISRILRS---GGVFVGTTFLRY  278 (304)
Q Consensus       245 ~vl~h~~d~~--~~l~~~~r~Lkp---gG~lvi~~~~~~  278 (304)
                      ++|||++++.  .++++++++|||   ||+|++.++...
T Consensus       254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~  292 (352)
T 1fp2_A          254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID  292 (352)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred             hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence            9999999988  999999999999   999999987653

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.54  E-value=9.3e-15  Score=141.75  Aligned_cols=107  Identities=16%  Similarity=0.234  Sum_probs=92.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCCCccceEEe
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHA  243 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~~  243 (304)
                      ++.+|||||||.|.++..|++.|.  +|+|||+++.+++.|+......+   ..++.+.+++++++  ++.+++||+|++
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga--~V~giD~~~~~i~~a~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~v~~  140 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA--TIVGIDFQQENINVCRALAEENP---DFAAEFRVGRIEEVIAALEEGEFDLAIG  140 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTST---TSEEEEEECCHHHHHHHCCTTSCSEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC--EEEEECCCHHHHHHHHHHHHhcC---CCceEEEECCHHHHhhhccCCCccEEEE
Confidence            467999999999999999999987  99999999999999999887765   25799999999887  456789999999


Q ss_pred             cchhccCCCHHH--HHHHHHHhcccCcEEEEEEeCC
Q 021975          244 GAALHCWPSPSN--AVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       244 ~~vl~h~~d~~~--~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..+|||++|+..  .+..+.+.|+++|..++.....
T Consensus       141 ~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~  176 (569)
T 4azs_A          141 LSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAV  176 (569)
T ss_dssp             ESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred             CcchhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence            999999998863  3567788899998877766554

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.54  E-value=8.2e-14  Score=126.40  Aligned_cols=122  Identities=17%  Similarity=0.199  Sum_probs=93.8

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcC-------cc-CCCCe
Q 021975          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDN-------TI-LTSNL  221 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~-------~~-~~~~i  221 (304)
                      .......+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.|+++++..+       .. ...++
T Consensus        90 ~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v  169 (336)
T 2b25_A           90 FPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV  169 (336)
T ss_dssp             CHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCce
Confidence            3444556666667777889999999999999999987 666799999999999999999887521       00 12579


Q ss_pred             EEEEccCCCC--CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          222 ALVRADVCRL--PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       222 ~~~~~d~~~l--p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .++.+|+.+.  ++++++||+|++.     .+++..+++++.++|||||+|++.....
T Consensus       170 ~~~~~d~~~~~~~~~~~~fD~V~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~  222 (336)
T 2b25_A          170 DFIHKDISGATEDIKSLTFDAVALD-----MLNPHVTLPVFYPHLKHGGVCAVYVVNI  222 (336)
T ss_dssp             EEEESCTTCCC-------EEEEEEC-----SSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             EEEECChHHcccccCCCCeeEEEEC-----CCCHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            9999999876  4667789999984     3556668999999999999999877643

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.54  E-value=1.5e-14  Score=124.97  Aligned_cols=109  Identities=14%  Similarity=0.096  Sum_probs=86.6

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ..+...+...++.+|||||||+|..+..+++.    ++..+|+|+|+++.+++.|+.        ...++.++++|+.+.
T Consensus        71 ~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~--------~~~~v~~~~gD~~~~  142 (236)
T 2bm8_A           71 AVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--------DMENITLHQGDCSDL  142 (236)
T ss_dssp             HHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--------GCTTEEEEECCSSCS
T ss_pred             HHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc--------cCCceEEEECcchhH
Confidence            33444444445679999999999999999987    566799999999999888862        236899999999884


Q ss_pred             ---CCCC-CccceEEecchhccCCCHHHHHHHHHH-hcccCcEEEEEEe
Q 021975          232 ---PFAS-GFVDAVHAGAALHCWPSPSNAVAEISR-ILRSGGVFVGTTF  275 (304)
Q Consensus       232 ---p~~~-~~fD~V~~~~vl~h~~d~~~~l~~~~r-~LkpgG~lvi~~~  275 (304)
                         +... .+||+|++...  | .+...++.++.+ +|||||+|++.+.
T Consensus       143 ~~l~~~~~~~fD~I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          143 TTFEHLREMAHPLIFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             GGGGGGSSSCSSEEEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             HHHHhhccCCCCEEEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence               5333 47999998765  4 377889999997 9999999999764

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.54  E-value=1.5e-14  Score=123.35  Aligned_cols=120  Identities=15%  Similarity=0.162  Sum_probs=94.9

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      .....+.......++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.++++++..+  ...++.++++|+.+.
T Consensus        51 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~  128 (225)
T 3tr6_A           51 EQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG--LSDKIGLRLSPAKDT  128 (225)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHH
T ss_pred             HHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeCCHHHH
Confidence            3344455554555678999999999999999999854 5799999999999999999998877  346799999998543


Q ss_pred             -C-CCC----CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          232 -P-FAS----GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       232 -p-~~~----~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                       + +..    ++||+|++...   ..+...+++++.++|||||+|++.+...
T Consensus       129 ~~~~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~  177 (225)
T 3tr6_A          129 LAELIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLR  177 (225)
T ss_dssp             HHHHHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             HHHhhhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence             2 111    78999997653   2356789999999999999999877654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.54  E-value=2.9e-14  Score=128.39  Aligned_cols=119  Identities=17%  Similarity=0.174  Sum_probs=94.7

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      ..+...+...++.+|||+|||+|..+..+++.. ...+|+|+|+++.+++.++++++..+.   .++.++++|+..++..
T Consensus       108 ~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~---~~v~~~~~D~~~~~~~  184 (315)
T 1ixk_A          108 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---LNVILFHSSSLHIGEL  184 (315)
T ss_dssp             HHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---CSEEEESSCGGGGGGG
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CeEEEEECChhhcccc
Confidence            344556667778899999999999999999874 346999999999999999999988762   4799999999887655


Q ss_pred             CCccceEEec------chhccCCCH----------------HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAG------AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~------~vl~h~~d~----------------~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++||+|++.      .++++.++.                ..+++++.++|||||+|++++..-
T Consensus       185 ~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          185 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            6789999984      334443321                478999999999999999988654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.54  E-value=7.2e-14  Score=127.74  Aligned_cols=126  Identities=20%  Similarity=0.082  Sum_probs=103.1

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (304)
                      +..+.+...+.......++.+|||+|||+|.++..++..+ +..+++|+|+++.+++.|+++++..+  .. ++.++++|
T Consensus       186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g--~~-~i~~~~~D  262 (354)
T 3tma_A          186 SLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG--LS-WIRFLRAD  262 (354)
T ss_dssp             SCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT--CT-TCEEEECC
T ss_pred             CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC--CC-ceEEEeCC
Confidence            4445566667777776778899999999999999999976 66799999999999999999999887  23 89999999


Q ss_pred             CCCCCCCCCccceEEecchhccCC--------CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          228 VCRLPFASGFVDAVHAGAALHCWP--------SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~--------d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +.+++.+...||+|+++-......        ....+++++.++|||||.+++.+...
T Consensus       263 ~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~  320 (354)
T 3tma_A          263 ARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP  320 (354)
T ss_dssp             GGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred             hhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            999887777899999964432211        12578999999999999999998754

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.53  E-value=9.1e-14  Score=123.10  Aligned_cols=119  Identities=16%  Similarity=0.096  Sum_probs=91.9

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeC-CHHHHHHHHHHH-----HhcCccCC----CCeE
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF-SENMLRQCYDFI-----KQDNTILT----SNLA  222 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~-s~~~~~~a~~~~-----~~~~~~~~----~~i~  222 (304)
                      .+.+.+.......++.+|||+|||+|.++..+++.+ ..+|+|+|+ ++.+++.++++.     +..+  ..    .++.
T Consensus        66 ~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~--~~~~~~~~v~  142 (281)
T 3bzb_A           66 ALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCS--SETVKRASPK  142 (281)
T ss_dssp             HHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC------------CCCE
T ss_pred             HHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcc--cccCCCCCeE
Confidence            345555555544567899999999999999998876 358999999 899999999998     4333  11    3678


Q ss_pred             EEEccCCCCC--C----CCCccceEEecchhccCCCHHHHHHHHHHhcc---c--CcEEEEEE
Q 021975          223 LVRADVCRLP--F----ASGFVDAVHAGAALHCWPSPSNAVAEISRILR---S--GGVFVGTT  274 (304)
Q Consensus       223 ~~~~d~~~lp--~----~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lk---p--gG~lvi~~  274 (304)
                      +...+..+..  +    .+++||+|++..+++|.++...+++++.++||   |  ||++++..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~  205 (281)
T 3bzb_A          143 VVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTF  205 (281)
T ss_dssp             EEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred             EEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence            8866654421  1    35789999999999999999999999999999   9  99877654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.53  E-value=9.4e-14  Score=119.35  Aligned_cols=106  Identities=23%  Similarity=0.273  Sum_probs=85.0

Q ss_pred             cccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC---CCCCCCcc
Q 021975          163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---LPFASGFV  238 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---lp~~~~~f  238 (304)
                      ...++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.+.++.+..     .++.++.+|+.+   +++.+++|
T Consensus        74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~~~~  148 (233)
T 2ipx_A           74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-----TNIIPVIEDARHPHKYRMLIAMV  148 (233)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-----TTEEEECSCTTCGGGGGGGCCCE
T ss_pred             cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-----CCeEEEEcccCChhhhcccCCcE
Confidence            3456789999999999999999987 45569999999999888777766543     579999999987   45557899


Q ss_pred             ceEEecchhccCCCH-HHHHHHHHHhcccCcEEEEEEeC
Q 021975          239 DAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       239 D~V~~~~vl~h~~d~-~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      |+|++...   .++. ..++.++.++|||||++++....
T Consensus       149 D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          149 DVIFADVA---QPDQTRIVALNAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             EEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             EEEEEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence            99999544   2233 45688999999999999996654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.53  E-value=4e-14  Score=119.87  Aligned_cols=89  Identities=17%  Similarity=0.296  Sum_probs=78.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .++.+|||||||+|.++..+.     .+++|+|+++.                  ++.++.+|+.++++++++||+|++.
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~------------------~~~~~~~d~~~~~~~~~~fD~v~~~  122 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL------------------DPRVTVCDMAQVPLEDESVDVAVFC  122 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS------------------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC------------------CceEEEeccccCCCCCCCEeEEEEe
Confidence            456899999999999988773     39999999875                  3568899999998888999999999


Q ss_pred             chhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .++|| .++..+++++.++|||||++++.++..
T Consensus       123 ~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~  154 (215)
T 2zfu_A          123 LSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSS  154 (215)
T ss_dssp             SCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             hhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            99964 899999999999999999999998765

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.53  E-value=1.6e-14  Score=127.46  Aligned_cols=122  Identities=14%  Similarity=0.153  Sum_probs=95.8

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC---
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---  233 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---  233 (304)
                      +...+...++.+|||+|||+|..+..+++..++ .+|+|+|+++.+++.++++++..+.   .++.++.+|+..++.   
T Consensus        75 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~~~~~~  151 (274)
T 3ajd_A           75 PPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV---LNTIIINADMRKYKDYLL  151 (274)
T ss_dssp             HHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCHHHHHHHHH
T ss_pred             HHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC---CcEEEEeCChHhcchhhh
Confidence            344556667889999999999999999986433 6999999999999999999988762   489999999977653   


Q ss_pred             -CCCccceEEec------chhc------------cCCCHHHHHHHHHHhcccCcEEEEEEeCCCCCCc
Q 021975          234 -ASGFVDAVHAG------AALH------------CWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST  282 (304)
Q Consensus       234 -~~~~fD~V~~~------~vl~------------h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~~~~  282 (304)
                       ..++||+|++.      .++.            +......+++++.++|||||++++++.......+
T Consensus       152 ~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~en  219 (274)
T 3ajd_A          152 KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEEN  219 (274)
T ss_dssp             HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSS
T ss_pred             hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHh
Confidence             25789999986      2222            2245678999999999999999998876544333

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.52  E-value=1.9e-13  Score=124.94  Aligned_cols=114  Identities=14%  Similarity=0.206  Sum_probs=96.4

Q ss_pred             HHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCcc
Q 021975          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (304)
Q Consensus       159 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f  238 (304)
                      ...+......+|||||||+|.++..+++++|+.+++..|. +.+++.++++.+..+   ..+++++.+|+...|.+  .+
T Consensus       172 ~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~---~~rv~~~~gD~~~~~~~--~~  245 (353)
T 4a6d_A          172 LTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE---EEQIDFQEGDFFKDPLP--EA  245 (353)
T ss_dssp             HHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-----CCSEEEEESCTTTSCCC--CC
T ss_pred             HHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc---cCceeeecCccccCCCC--Cc
Confidence            3333444567999999999999999999999999999997 889999998876543   57899999999876654  47


Q ss_pred             ceEEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEeCCC
Q 021975          239 DAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      |+|++.++||+++|+.  .+|+++++.|+|||+|++.+....
T Consensus       246 D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~  287 (353)
T 4a6d_A          246 DLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLD  287 (353)
T ss_dssp             SEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCC
T ss_pred             eEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeC
Confidence            9999999999999884  689999999999999999997653

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.52  E-value=6.2e-15  Score=127.84  Aligned_cols=121  Identities=9%  Similarity=0.073  Sum_probs=96.6

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      .....++...+...++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|+++++..+  ...++.++.+|+.+
T Consensus        46 ~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda~~  123 (242)
T 3r3h_A           46 PEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK--QEHKIKLRLGPALD  123 (242)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT--CTTTEEEEESCHHH
T ss_pred             HHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHH
Confidence            33444555555555678999999999999999998753 6799999999999999999998887  45689999999865


Q ss_pred             CC-CC-----CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          231 LP-FA-----SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       231 lp-~~-----~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .. ..     +++||+|++...   ..+...+++++.++|||||+|++.+...
T Consensus       124 ~l~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~  173 (242)
T 3r3h_A          124 TLHSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFW  173 (242)
T ss_dssp             HHHHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred             HHHHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence            32 11     478999998765   2356678999999999999999976554

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.52  E-value=4.4e-14  Score=122.81  Aligned_cols=118  Identities=14%  Similarity=0.115  Sum_probs=94.3

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-  231 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-  231 (304)
                      ....+...+...++.+|||||||+|..+..+++..+ +.+++++|+++.+++.|+++++..+  ...++.++.+|+.+. 
T Consensus        67 ~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l  144 (247)
T 1sui_A           67 EGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG--VDHKIDFREGPALPVL  144 (247)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--CGGGEEEEESCHHHHH
T ss_pred             HHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECCHHHHH
Confidence            334444444445678999999999999999999854 5799999999999999999998877  346899999998653 


Q ss_pred             C-C-----CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          232 P-F-----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       232 p-~-----~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      + +     .+++||+|++...   ..+...+++++.++|||||+|++....
T Consensus       145 ~~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~  192 (247)
T 1sui_A          145 DEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNTL  192 (247)
T ss_dssp             HHHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred             HHHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence            3 2     1578999998754   346788999999999999999886543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.52  E-value=3.9e-14  Score=118.63  Aligned_cols=100  Identities=12%  Similarity=0.282  Sum_probs=80.3

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---------
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGT--YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------  232 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------  232 (304)
                      ..++.+|||+|||+|.++..+++..+  ..+|+|+|+++..              ...++.++++|+.+.+         
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------------~~~~v~~~~~d~~~~~~~~~~~~~~   85 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------------PIPNVYFIQGEIGKDNMNNIKNINY   85 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------------CCTTCEEEECCTTTTSSCCC-----
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------------CCCCceEEEccccchhhhhhccccc
Confidence            34577999999999999999998865  5799999999831              1257899999998876         


Q ss_pred             ----------------CCCCccceEEecchhccCC----CHH-------HHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 ----------------FASGFVDAVHAGAALHCWP----SPS-------NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 ----------------~~~~~fD~V~~~~vl~h~~----d~~-------~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                                      +++++||+|++..++++..    +..       .+++++.++|||||.|++..+..
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  157 (201)
T 2plw_A           86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG  157 (201)
T ss_dssp             ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence                            5667999999988776642    222       37899999999999999977654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.51  E-value=9.7e-14  Score=122.38  Aligned_cols=106  Identities=20%  Similarity=0.214  Sum_probs=91.7

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      ..++.+|||+|||+|.++..+++.++..+|+|+|+++.+++.|+++++.+++   .++.++.+|+.+.+. .++||+|++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l---~~~~~~~~d~~~~~~-~~~~D~Vi~  192 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL---NNVIPILADNRDVEL-KDVADRVIM  192 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC---SSEEEEESCGGGCCC-TTCEEEEEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCEEEEECChHHcCc-cCCceEEEE
Confidence            3457899999999999999999986567999999999999999999998873   578999999987743 578999999


Q ss_pred             cchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ....    +...++.++.+.|||||++++.++..
T Consensus       193 d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          193 GYVH----KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             CCCS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCcc----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            7653    66778999999999999999988765

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.51  E-value=1.6e-13  Score=121.82  Aligned_cols=118  Identities=17%  Similarity=0.166  Sum_probs=92.7

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      +.+.+.+.+.+...++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++.+..+  ...++.++++|+...
T Consensus       109 e~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~--l~~~v~~~~~D~~~~  185 (284)
T 1nv8_A          109 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHG--VSDRFFVRKGEFLEP  185 (284)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTT--CTTSEEEEESSTTGG
T ss_pred             HHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECcchhh
Confidence            344555555555445679999999999999999998 67799999999999999999998877  344699999999773


Q ss_pred             CCCCCcc---ceEEec------------chhccCC--------CHHHHHHHHH-HhcccCcEEEEEEe
Q 021975          232 PFASGFV---DAVHAG------------AALHCWP--------SPSNAVAEIS-RILRSGGVFVGTTF  275 (304)
Q Consensus       232 p~~~~~f---D~V~~~------------~vl~h~~--------d~~~~l~~~~-r~LkpgG~lvi~~~  275 (304)
                       ++ ++|   |+|+++            .+. |.+        |...+++++. +.|+|||++++...
T Consensus       186 -~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~  250 (284)
T 1nv8_A          186 -FK-EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG  250 (284)
T ss_dssp             -GG-GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred             -cc-cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence             33 579   999996            222 322        2237899999 99999999998543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.51  E-value=8.8e-14  Score=131.98  Aligned_cols=113  Identities=19%  Similarity=0.291  Sum_probs=93.4

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+++ +++.|+++++..+  ...++.++.+|+.+++++ 
T Consensus       148 ~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~-~~~V~gvD~s~-~l~~A~~~~~~~g--l~~~v~~~~~d~~~~~~~-  222 (480)
T 3b3j_A          148 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNN--LTDRIVVIPGKVEEVSLP-  222 (480)
T ss_dssp             HHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTT-CSEEEEEECHH-HHHHHHHHHHHTT--CTTTEEEEESCTTTCCCS-
T ss_pred             HHHHHhhhhcCCCEEEEecCcccHHHHHHHHcC-CCEEEEEEcHH-HHHHHHHHHHHcC--CCCcEEEEECchhhCccC-
Confidence            334444555567899999999999999998864 46999999998 9999999998877  457899999999987765 


Q ss_pred             CccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEE
Q 021975          236 GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~  273 (304)
                      ++||+|++..+++|+.+.  ...+.++.++|||||++++.
T Consensus       223 ~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          223 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence            589999999888887654  46778889999999999853

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.51  E-value=6.8e-14  Score=119.76  Aligned_cols=113  Identities=24%  Similarity=0.376  Sum_probs=89.2

Q ss_pred             HHHHhh--cccCCCeEEEEcCCccHHHHHHHHhCC------CCeEEEEeCCHHHHHHHHHHHHhcCc--cCCCCeEEEEc
Q 021975          157 MAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKSGT------YSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRA  226 (304)
Q Consensus       157 ~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~~------~~~v~giD~s~~~~~~a~~~~~~~~~--~~~~~i~~~~~  226 (304)
                      .+.+.+  ...++.+|||||||+|.++..+++...      ..+|+++|+++.+++.++++++..+.  ....++.++.+
T Consensus        73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  152 (227)
T 1r18_A           73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG  152 (227)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC
Confidence            344444  245678999999999999999988532      24999999999999999998876420  00257999999


Q ss_pred             cCCCCCCCC-CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          227 DVCRLPFAS-GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       227 d~~~lp~~~-~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      |+.. ++++ ++||+|++..+++|+.      +++.+.|||||++++....
T Consensus       153 d~~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          153 DGRK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             CGGG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred             Cccc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEec
Confidence            9876 4444 7899999999999875      7889999999999998754

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.51  E-value=1.8e-13  Score=116.96  Aligned_cols=104  Identities=16%  Similarity=0.223  Sum_probs=83.8

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCccc
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD  239 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD  239 (304)
                      ..++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.++++.+..     .++.++.+|+....   ...++||
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~D  145 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-----CCCEEEEccCCCcchhhcccCCce
Confidence            456789999999999999999987 55569999999999999998877643     57999999998732   1235899


Q ss_pred             eEEecchhccCCCHH-HHHHHHHHhcccCcEEEEEEe
Q 021975          240 AVHAGAALHCWPSPS-NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       240 ~V~~~~vl~h~~d~~-~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +|++...   .++.. .+++++.++|||||++++...
T Consensus       146 ~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~  179 (227)
T 1g8a_A          146 VIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIAVK  179 (227)
T ss_dssp             EEEECCC---STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            9998654   23343 459999999999999999843

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.51  E-value=1.5e-13  Score=126.09  Aligned_cols=103  Identities=22%  Similarity=0.368  Sum_probs=89.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe-
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-  243 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~-  243 (304)
                      .++++|||||||+|.++..+++.|. .+|+|+|.|+ +++.|++.++.++  ...+|.++.++++++.++ ++||+|++ 
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n~--~~~~i~~i~~~~~~~~lp-e~~DvivsE  156 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFNG--LEDRVHVLPGPVETVELP-EQVDAIVSE  156 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHTT--CTTTEEEEESCTTTCCCS-SCEEEEECC
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHcC--CCceEEEEeeeeeeecCC-ccccEEEee
Confidence            4688999999999999988888874 5899999996 8899999999988  568899999999998876 68999998 


Q ss_pred             --cchhccCCCHHHHHHHHHHhcccCcEEEE
Q 021975          244 --GAALHCWPSPSNAVAEISRILRSGGVFVG  272 (304)
Q Consensus       244 --~~vl~h~~d~~~~l~~~~r~LkpgG~lvi  272 (304)
                        ...|.+-.....++....++|||||.++-
T Consensus       157 ~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          157 WMGYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             CCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccccccchhhhHHHHHHhhCCCCceECC
Confidence              45566667788999999999999998774

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.50  E-value=7.4e-14  Score=120.52  Aligned_cols=120  Identities=19%  Similarity=0.230  Sum_probs=95.4

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      ....+.+...+...++.+|||||||+|..+..+++..+ ..+++++|+++.+++.|+++++..+  ...++.++.+|+.+
T Consensus        46 ~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~  123 (239)
T 2hnk_A           46 PEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG--LENKIFLKLGSALE  123 (239)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHH
T ss_pred             HHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCHHH
Confidence            34455566666556788999999999999999999854 5699999999999999999998776  33469999999754


Q ss_pred             C-C--------------CCC--CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          231 L-P--------------FAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       231 l-p--------------~~~--~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      . +              |++  ++||+|++....+   +...+++++.++|||||++++.+..
T Consensus       124 ~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~  183 (239)
T 2hnk_A          124 TLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE---NYPNYYPLILKLLKPGGLLIADNVL  183 (239)
T ss_dssp             HHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG---GHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             HHHHHHhhcccccccccccCCCCCcCEEEEeCCHH---HHHHHHHHHHHHcCCCeEEEEEccc
Confidence            2 2              222  7899999986544   4568899999999999999987643

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.49  E-value=6.3e-14  Score=122.33  Aligned_cols=103  Identities=18%  Similarity=0.223  Sum_probs=87.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .++.+|||+|||+|.++..+++.++  +|+|+|+++.+++.++++.+.++.   . +.++.+|+.+. +++++||+|+++
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~---~-v~~~~~d~~~~-~~~~~fD~Vv~n  191 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGV---R-PRFLEGSLEAA-LPFGPFDLLVAN  191 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTC---C-CEEEESCHHHH-GGGCCEEEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCC---c-EEEEECChhhc-CcCCCCCEEEEC
Confidence            4578999999999999999999886  999999999999999999988762   2 89999988662 446789999998


Q ss_pred             chhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ...++   ...++.++.++|||||++++.....
T Consensus       192 ~~~~~---~~~~l~~~~~~LkpgG~lils~~~~  221 (254)
T 2nxc_A          192 LYAEL---HAALAPRYREALVPGGRALLTGILK  221 (254)
T ss_dssp             CCHHH---HHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred             CcHHH---HHHHHHHHHHHcCCCCEEEEEeecc
Confidence            76554   4678999999999999999987654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.49  E-value=4.7e-13  Score=114.94  Aligned_cols=114  Identities=14%  Similarity=0.095  Sum_probs=84.3

Q ss_pred             HHHHHHHhhc---ccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC
Q 021975          154 EFKMAQEYFK---SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (304)
Q Consensus       154 ~~~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (304)
                      ....+...+.   ..++.+|||+|||+|.++..+++. ++.++|+|+|+++.+++...+..+..     .++.++.+|+.
T Consensus        61 la~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-----~nv~~i~~Da~  135 (232)
T 3id6_C           61 LAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-----PNIFPLLADAR  135 (232)
T ss_dssp             HHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-----TTEEEEECCTT
T ss_pred             HHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCeEEEEcccc
Confidence            3344444443   567899999999999999999886 56779999999999876554443322     57999999997


Q ss_pred             CCC---CCCCccceEEecchhccCCCHHHHH-HHHHHhcccCcEEEEEEe
Q 021975          230 RLP---FASGFVDAVHAGAALHCWPSPSNAV-AEISRILRSGGVFVGTTF  275 (304)
Q Consensus       230 ~lp---~~~~~fD~V~~~~vl~h~~d~~~~l-~~~~r~LkpgG~lvi~~~  275 (304)
                      ...   ...++||+|++....   ++....+ ..+.+.|||||+|++...
T Consensus       136 ~~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik  182 (232)
T 3id6_C          136 FPQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIK  182 (232)
T ss_dssp             CGGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cchhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence            642   124689999997643   5555554 455669999999999854

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.49  E-value=9e-14  Score=119.63  Aligned_cols=119  Identities=13%  Similarity=0.090  Sum_probs=93.4

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC--
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--  230 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--  230 (304)
                      ....+.......++.+|||||||+|..+..+++..+ ..+++++|+++.+++.|+++++..+  ...++.++.+|+.+  
T Consensus        60 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~~d~~~~l  137 (232)
T 3cbg_A           60 QAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG--VAEKISLRLGPALATL  137 (232)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHH
Confidence            334444444445678999999999999999998754 5699999999999999999998776  34579999999743  


Q ss_pred             --CCCCC--CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          231 --LPFAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       231 --lp~~~--~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                        ++..+  ++||+|++....   .+...+++++.++|||||++++.....
T Consensus       138 ~~l~~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpgG~lv~~~~~~  185 (232)
T 3cbg_A          138 EQLTQGKPLPEFDLIFIDADK---RNYPRYYEIGLNLLRRGGLMVIDNVLW  185 (232)
T ss_dssp             HHHHTSSSCCCEEEEEECSCG---GGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred             HHHHhcCCCCCcCEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence              22323  789999987652   356788999999999999999876543

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.49  E-value=3.6e-14  Score=126.02  Aligned_cols=114  Identities=17%  Similarity=0.222  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++...+  ...++.++.+|+.++
T Consensus        14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~D~~~~   89 (285)
T 1zq9_A           14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTP--VASKLQVLVGDVLKT   89 (285)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTST--TGGGEEEEESCTTTS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcceecc
Confidence            44556677777777788999999999999999999976  99999999999999999886654  235799999999887


Q ss_pred             CCCCCccceEEec-----------chhccCCCHHHHH----HHH--HHhcccCcEEE
Q 021975          232 PFASGFVDAVHAG-----------AALHCWPSPSNAV----AEI--SRILRSGGVFV  271 (304)
Q Consensus       232 p~~~~~fD~V~~~-----------~vl~h~~d~~~~l----~~~--~r~LkpgG~lv  271 (304)
                      +++  +||+|+++           .+++|.++...++    +|+  +++|||||.++
T Consensus        90 ~~~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           90 DLP--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             CCC--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             cch--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            765  79999995           4566655543211    333  46999999764

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.49  E-value=5.8e-14  Score=127.23  Aligned_cols=119  Identities=10%  Similarity=0.044  Sum_probs=92.8

Q ss_pred             HHHHHHhhc-ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCC-CeEEEEccCCCCC
Q 021975          155 FKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRLP  232 (304)
Q Consensus       155 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~-~i~~~~~d~~~lp  232 (304)
                      .+.+.+.+. ..++.+|||+|||+|.++..+++.+.  +|+++|+|+.+++.|+++++.+++  .. ++.++++|+.++.
T Consensus       141 ~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl--~~~~v~~i~~D~~~~l  216 (332)
T 2igt_A          141 WEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGL--EQAPIRWICEDAMKFI  216 (332)
T ss_dssp             HHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTC--TTSCEEEECSCHHHHH
T ss_pred             HHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCC--CccceEEEECcHHHHH
Confidence            344555554 34567999999999999999999876  999999999999999999988772  23 5999999987643


Q ss_pred             C----CCCccceEEecc----------hhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 F----ASGFVDAVHAGA----------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 ~----~~~~fD~V~~~~----------vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .    ..++||+|++.-          ++++..+...+++++.++|||||+|++.....
T Consensus       217 ~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          217 QREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             HHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            1    146899999942          22334456789999999999999988777655

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.48  E-value=8.6e-14  Score=127.36  Aligned_cols=100  Identities=18%  Similarity=0.183  Sum_probs=87.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      +..+|||||||+|.++..+++.++..+++++|+ +.+++.+++         ..++.++.+|+.+ +++  .||+|++.+
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~--~~D~v~~~~  259 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG---------NENLNFVGGDMFK-SIP--SADAVLLKW  259 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC---------CSSEEEEECCTTT-CCC--CCSEEEEES
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc---------CCCcEEEeCccCC-CCC--CceEEEEcc
Confidence            467999999999999999999988889999999 788876654         2469999999987 665  499999999


Q ss_pred             hhccCCCHH--HHHHHHHHhccc---CcEEEEEEeCCC
Q 021975          246 ALHCWPSPS--NAVAEISRILRS---GGVFVGTTFLRY  278 (304)
Q Consensus       246 vl~h~~d~~--~~l~~~~r~Lkp---gG~lvi~~~~~~  278 (304)
                      +|||++++.  .+|+++.++|||   ||+|++.++...
T Consensus       260 vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~  297 (358)
T 1zg3_A          260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISID  297 (358)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred             cccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence            999999988  999999999999   999999887653

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.48  E-value=2.7e-13  Score=127.83  Aligned_cols=120  Identities=18%  Similarity=0.262  Sum_probs=99.2

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (304)
                      ..+...+...++.+|||+|||+|..+..++...++ .+++++|+++.+++.++++++..+   ..++.++++|+..++  
T Consensus       249 ~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g---~~~v~~~~~D~~~~~~~  325 (450)
T 2yxl_A          249 AVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG---IKIVKPLVKDARKAPEI  325 (450)
T ss_dssp             HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSCTTCCSSS
T ss_pred             HHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC---CCcEEEEEcChhhcchh
Confidence            34455566777889999999999999999987544 699999999999999999998876   257999999998876  


Q ss_pred             CCCCccceEEe------cchhccCCCH----------------HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          233 FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       233 ~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      +++++||+|++      ..++++.++.                ..+++++.++|||||+|++++..-.
T Consensus       326 ~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~  393 (450)
T 2yxl_A          326 IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF  393 (450)
T ss_dssp             SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            55578999996      4566666654                5689999999999999999887654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.48  E-value=1.3e-13  Score=117.91  Aligned_cols=119  Identities=15%  Similarity=0.117  Sum_probs=94.2

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ...+.+.......++.+|||||||+|.++..+++..+ ..+++++|+++.+++.|+++++..+  ...++.++.+|+.+.
T Consensus        56 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~i~~~~~d~~~~  133 (229)
T 2avd_A           56 EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE--AEHKIDLRLKPALET  133 (229)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT--CTTTEEEEESCHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCCeEEEEEcCHHHH
Confidence            3444555555555678999999999999999998754 5699999999999999999998876  346899999998543


Q ss_pred             -C-CCC----CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          232 -P-FAS----GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       232 -p-~~~----~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                       + +..    ++||+|++...   ..+...+++++.++|||||++++....
T Consensus       134 ~~~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~  181 (229)
T 2avd_A          134 LDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVL  181 (229)
T ss_dssp             HHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             HHHHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence             1 111    68999999654   345678999999999999999987654

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.46  E-value=1.1e-13  Score=123.85  Aligned_cols=112  Identities=14%  Similarity=0.152  Sum_probs=86.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CccCCCCeEEEEccCCCCCC--CCCccceE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRLPF--ASGFVDAV  241 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~lp~--~~~~fD~V  241 (304)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.+++++... ......++.++.+|+...+.  .+++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            3567999999999999999998765679999999999999999987421 00024689999999876543  36789999


Q ss_pred             EecchhccCCCH----HHHHHHHHHhcccCcEEEEEEeC
Q 021975          242 HAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       242 ~~~~vl~h~~d~----~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ++....++.+..    ..+++++.++|||||++++....
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  212 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES  212 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            997665544333    57899999999999999997643

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.45  E-value=2.5e-13  Score=127.33  Aligned_cols=121  Identities=18%  Similarity=0.223  Sum_probs=99.7

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (304)
                      ....+...+...++.+|||+|||+|..+..+++.+++.+++|+|+++.+++.++++++..+    .++.++++|+..++ 
T Consensus       234 ~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g----~~~~~~~~D~~~~~~  309 (429)
T 1sqg_A          234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG----MKATVKQGDGRYPSQ  309 (429)
T ss_dssp             HHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT----CCCEEEECCTTCTHH
T ss_pred             HHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC----CCeEEEeCchhhchh
Confidence            3344555667777889999999999999999998766799999999999999999998876    35789999998876 


Q ss_pred             -CCCCccceEEe------cchhccCCCH----------------HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          233 -FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       233 -~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                       +++++||+|++      ..++++.++.                ..+++++.++|||||++++++..-.
T Consensus       310 ~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~  378 (429)
T 1sqg_A          310 WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL  378 (429)
T ss_dssp             HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred             hcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence             55678999996      3456666654                3779999999999999999986543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.45  E-value=4.8e-13  Score=114.38  Aligned_cols=118  Identities=13%  Similarity=0.076  Sum_probs=94.7

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      ..+.+.+++..  +.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++.++  ...++.+..+|..+...
T Consensus        11 RL~~i~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g--l~~~I~~~~gD~l~~~~   86 (230)
T 3lec_A           11 RLQKVANYVPK--GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG--LTSKIDVRLANGLSAFE   86 (230)
T ss_dssp             HHHHHHTTSCT--TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCC
T ss_pred             HHHHHHHhCCC--CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhhccc
Confidence            34456666554  679999999999999999999877789999999999999999999988  45789999999987654


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++..||+|+..++.-.  -...++.+....|+++|+|++.....
T Consensus        87 ~~~~~D~IviaGmGg~--lI~~IL~~~~~~l~~~~~lIlqp~~~  128 (230)
T 3lec_A           87 EADNIDTITICGMGGR--LIADILNNDIDKLQHVKTLVLQPNNR  128 (230)
T ss_dssp             GGGCCCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred             cccccCEEEEeCCchH--HHHHHHHHHHHHhCcCCEEEEECCCC
Confidence            4447999886544221  13457888888999999999888644

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.44  E-value=5e-14  Score=115.68  Aligned_cols=91  Identities=16%  Similarity=0.169  Sum_probs=79.5

Q ss_pred             cccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC---CCCccc
Q 021975          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVD  239 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD  239 (304)
                      ...++.+|||+|||.                +++|+|+.|++.|+++..       .++.++++|+.++++   ++++||
T Consensus         9 g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~-------~~~~~~~~d~~~~~~~~~~~~~fD   65 (176)
T 2ld4_A            9 GISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG-------NEGRVSVENIKQLLQSAHKESSFD   65 (176)
T ss_dssp             TCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT-------TTSEEEEEEGGGGGGGCCCSSCEE
T ss_pred             CCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc-------cCcEEEEechhcCccccCCCCCEe
Confidence            445688999999986                239999999999998742       348999999999887   788999


Q ss_pred             eEEecchhccC-CCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          240 AVHAGAALHCW-PSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       240 ~V~~~~vl~h~-~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +|++..++||+ +++..++++++++|||||+|++..+.
T Consensus        66 ~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  103 (176)
T 2ld4_A           66 IILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPV  103 (176)
T ss_dssp             EEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEccc
Confidence            99999999999 99999999999999999999997653

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.44  E-value=6.9e-14  Score=128.09  Aligned_cols=110  Identities=16%  Similarity=0.163  Sum_probs=85.4

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCC------ccHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCG------SGLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG------~G~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (304)
                      ..+.+...+.. ++.+|||||||      +|..+..+.+ .++..+|+|+|+|+.|.        .    ...++.++++
T Consensus       205 ~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~----~~~rI~fv~G  271 (419)
T 3sso_A          205 HYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V----DELRIRTIQG  271 (419)
T ss_dssp             HHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G----CBTTEEEEEC
T ss_pred             HHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h----cCCCcEEEEe
Confidence            33344433332 46799999999      6555555554 45778999999999872        1    2378999999


Q ss_pred             cCCCCCCC------CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          227 DVCRLPFA------SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       227 d~~~lp~~------~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      |+.++++.      +++||+|++.. .+++.++..+|+++.++|||||++++.+...
T Consensus       272 Da~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~t  327 (419)
T 3sso_A          272 DQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMWT  327 (419)
T ss_dssp             CTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred             cccccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence            99998876      68999999875 4667788899999999999999999988763

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.44  E-value=2.7e-13  Score=117.09  Aligned_cols=118  Identities=15%  Similarity=0.182  Sum_probs=93.2

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-  231 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-  231 (304)
                      ....+.......++.+|||||||+|..+..+++..+ +.+++++|+++.+++.|+++++..+  ...++.++.+|+.+. 
T Consensus        58 ~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l  135 (237)
T 3c3y_A           58 AGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG--VEHKINFIESDAMLAL  135 (237)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHH
T ss_pred             HHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHH
Confidence            334444444445678999999999999999998854 6799999999999999999998877  345799999998653 


Q ss_pred             C-C-----CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          232 P-F-----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       232 p-~-----~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      + +     +.++||+|++....   .+...+++++.++|||||++++....
T Consensus       136 ~~l~~~~~~~~~fD~I~~d~~~---~~~~~~l~~~~~~L~pGG~lv~d~~~  183 (237)
T 3c3y_A          136 DNLLQGQESEGSYDFGFVDADK---PNYIKYHERLMKLVKVGGIVAYDNTL  183 (237)
T ss_dssp             HHHHHSTTCTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred             HHHHhccCCCCCcCEEEECCch---HHHHHHHHHHHHhcCCCeEEEEecCC
Confidence            2 2     25789999986532   34578899999999999999886543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.44  E-value=2.7e-13  Score=120.04  Aligned_cols=107  Identities=17%  Similarity=0.223  Sum_probs=78.0

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEE-EccCCCCC--
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV-RADVCRLP--  232 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~-~~d~~~lp--  232 (304)
                      ..+..+....++.+|||||||+|.++..+++.+ ..+|+|+|+++.|++.+.+.        ..++... ..++..++  
T Consensus        75 ~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~g-a~~V~aVDvs~~mL~~a~r~--------~~rv~~~~~~ni~~l~~~  145 (291)
T 3hp7_A           75 KALAVFNLSVEDMITIDIGASTGGFTDVMLQNG-AKLVYAVDVGTNQLVWKLRQ--------DDRVRSMEQYNFRYAEPV  145 (291)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSSSCSCHHHHT--------CTTEEEECSCCGGGCCGG
T ss_pred             HHHHhcCCCccccEEEecCCCccHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh--------CcccceecccCceecchh
Confidence            334433333457799999999999999998885 35999999999999886541        2344332 23433332  


Q ss_pred             -CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                       ++..+||+|++..+++++   ..+|.++.++|||||.+++..
T Consensus       146 ~l~~~~fD~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~lv  185 (291)
T 3hp7_A          146 DFTEGLPSFASIDVSFISL---NLILPALAKILVDGGQVVALV  185 (291)
T ss_dssp             GCTTCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE
T ss_pred             hCCCCCCCEEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEEE
Confidence             334569999998877654   778999999999999999874

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.43  E-value=5.5e-13  Score=114.93  Aligned_cols=117  Identities=9%  Similarity=0.068  Sum_probs=93.4

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      .+.+.+++..  +.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++.++  ...++.+..+|..+...+
T Consensus        12 L~~i~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l~~~I~v~~gD~l~~~~~   87 (244)
T 3gnl_A           12 LEKVASYITK--NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG--LTEQIDVRKGNGLAVIEK   87 (244)
T ss_dssp             HHHHHTTCCS--SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCG
T ss_pred             HHHHHHhCCC--CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEecchhhccCc
Confidence            4456666654  679999999999999999999876789999999999999999999988  456799999999775544


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +..||+|+...+.-.  -...++.+....|+++|+|++.....
T Consensus        88 ~~~~D~IviagmGg~--lI~~IL~~~~~~L~~~~~lIlq~~~~  128 (244)
T 3gnl_A           88 KDAIDTIVIAGMGGT--LIRTILEEGAAKLAGVTKLILQPNIA  128 (244)
T ss_dssp             GGCCCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred             cccccEEEEeCCchH--HHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            346999886543221  13457888899999999999988644

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.43  E-value=6.6e-13  Score=118.83  Aligned_cols=107  Identities=14%  Similarity=0.169  Sum_probs=86.0

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCCCccceEEec
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAG  244 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~~~  244 (304)
                      ..+|||||||+|.++..+++..+..+++++|+++.+++.|++++...   ...+++++.+|+...  .+++++||+|++.
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~---~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D  166 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP---RAPRVKIRVDDARMVAESFTPASRDVIIRD  166 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC---CTTTEEEEESCHHHHHHTCCTTCEEEEEEC
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc---CCCceEEEECcHHHHHhhccCCCCCEEEEC
Confidence            34999999999999999999766779999999999999999987643   246899999998654  2446789999986


Q ss_pred             chhccC-C---CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          245 AALHCW-P---SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       245 ~vl~h~-~---d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ...+.. +   ....++++++++|||||+|++....
T Consensus       167 ~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          167 VFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             CSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            432221 1   1257899999999999999988764

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.43  E-value=2.5e-13  Score=118.15  Aligned_cols=105  Identities=14%  Similarity=0.135  Sum_probs=74.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC---CCCC---Cccc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFAS---GFVD  239 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~~---~~fD  239 (304)
                      ++.+|||+|||+|.++..++...+..+|+|+|+++.+++.|+++++..+  ...++.++++|+.+.   +++.   ++||
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN--LSDLIKVVKVPQKTLLMDALKEESEIIYD  142 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcC--CCccEEEEEcchhhhhhhhhhcccCCccc
Confidence            4679999999999999988887545699999999999999999998876  345699999997652   4442   6899


Q ss_pred             eEEecchhccCC--------------CH-HHHHHHHHHhcccCcEEEE
Q 021975          240 AVHAGAALHCWP--------------SP-SNAVAEISRILRSGGVFVG  272 (304)
Q Consensus       240 ~V~~~~vl~h~~--------------d~-~~~l~~~~r~LkpgG~lvi  272 (304)
                      +|++...+++..              .+ ..++.++.++|||||.+.+
T Consensus       143 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~  190 (254)
T 2h00_A          143 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF  190 (254)
T ss_dssp             EEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred             EEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence            999985444332              01 1345556666666665443

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.43  E-value=4.3e-13  Score=111.69  Aligned_cols=100  Identities=17%  Similarity=0.186  Sum_probs=77.1

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCC---------CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEE-EccCCCCC-
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTY---------SGVVALDFSENMLRQCYDFIKQDNTILTSNLALV-RADVCRLP-  232 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---------~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~-~~d~~~lp-  232 (304)
                      ..++.+|||+|||+|.++..+++..+.         .+|+|+|+++..              ...++.++ .+|+...+ 
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------------~~~~~~~~~~~d~~~~~~   85 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------------PLEGATFLCPADVTDPRT   85 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------------CCTTCEEECSCCTTSHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------------cCCCCeEEEeccCCCHHH
Confidence            346789999999999999999998432         699999999831              12568888 88987643 


Q ss_pred             -------CCCCccceEEecchhcc----CCCH-------HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 -------FASGFVDAVHAGAALHC----WPSP-------SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 -------~~~~~fD~V~~~~vl~h----~~d~-------~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                             +++++||+|++...++.    ..+.       ..+++++.++|||||+|++.++..
T Consensus        86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence                   33568999999654443    2333       478999999999999999988754

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.42  E-value=6.9e-13  Score=113.18  Aligned_cols=114  Identities=11%  Similarity=0.110  Sum_probs=90.5

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA  234 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~  234 (304)
                      +.+.+++..  +.+|||||||+|.++..++..++..+|+++|+++.+++.|+++++.++  ...++.+..+|... ++. 
T Consensus         7 ~~l~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l~~~i~~~~~d~l~~l~~-   81 (225)
T 3kr9_A            7 ELVASFVSQ--GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG--LKEKIQVRLANGLAAFEE-   81 (225)
T ss_dssp             HHHHTTSCT--TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCG-
T ss_pred             HHHHHhCCC--CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEECchhhhccc-
Confidence            445555543  679999999999999999999877799999999999999999999998  45679999999854 332 


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ...||+|+....--.  -...++.+....|+++|+|++....
T Consensus        82 ~~~~D~IviaG~Gg~--~i~~Il~~~~~~L~~~~~lVlq~~~  121 (225)
T 3kr9_A           82 TDQVSVITIAGMGGR--LIARILEEGLGKLANVERLILQPNN  121 (225)
T ss_dssp             GGCCCEEEEEEECHH--HHHHHHHHTGGGCTTCCEEEEEESS
T ss_pred             CcCCCEEEEcCCChH--HHHHHHHHHHHHhCCCCEEEEECCC
Confidence            226998887543221  1356788999999999999987653

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.42  E-value=1.9e-12  Score=119.11  Aligned_cols=105  Identities=13%  Similarity=0.029  Sum_probs=87.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CCC-CCCccceEEe
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF-ASGFVDAVHA  243 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~-~~~~fD~V~~  243 (304)
                      ++.+|||+| |+|.++..++..++..+|+|+|+++.+++.|+++++..++   .++.++.+|+.+ +|. .+++||+|++
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~---~~v~~~~~D~~~~l~~~~~~~fD~Vi~  247 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY---EDIEIFTFDLRKPLPDYALHKFDTFIT  247 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC---CCEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCEEEEEChhhhhchhhccCCccEEEE
Confidence            578999999 9999999999887667999999999999999999988772   389999999988 663 3568999999


Q ss_pred             cchhccCCCHHHHHHHHHHhcccCcEE-EEEEe
Q 021975          244 GAALHCWPSPSNAVAEISRILRSGGVF-VGTTF  275 (304)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~l-vi~~~  275 (304)
                      ...+++.. ...+++++.++|||||++ ++...
T Consensus       248 ~~p~~~~~-~~~~l~~~~~~LkpgG~~~~~~~~  279 (373)
T 2qm3_A          248 DPPETLEA-IRAFVGRGIATLKGPRCAGYFGIT  279 (373)
T ss_dssp             CCCSSHHH-HHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred             CCCCchHH-HHHHHHHHHHHcccCCeEEEEEEe
Confidence            86554332 478899999999999954 55544

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.41  E-value=5.9e-14  Score=120.86  Aligned_cols=109  Identities=17%  Similarity=0.159  Sum_probs=69.6

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEE-ccCCCCCCCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFAS  235 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~  235 (304)
                      .+..+....++.+|||||||+|.++..+++.+ ..+|+|+|+|+.|++.++++..........++.++. .++..     
T Consensus        28 ~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----  101 (232)
T 3opn_A           28 ALKEFHLEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ-----  101 (232)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS-----
T ss_pred             HHHHcCCCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc-----
Confidence            34333333456799999999999999999986 249999999999999987742211000001122222 22222     


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ..||.+.+..++.++   ..+++++.++|||||.+++..
T Consensus       102 ~~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          102 GRPSFTSIDVSFISL---DLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             CCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE
T ss_pred             CCCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEEE
Confidence            123444443333333   678999999999999999864

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.40  E-value=1.8e-12  Score=119.36  Aligned_cols=120  Identities=16%  Similarity=0.128  Sum_probs=94.6

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      .+.+...+.... ..++.+|||+|||+|.++..++..+...+++|+|+++.+++.|+++++..+  ...++.++++|+.+
T Consensus       203 ~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~g--l~~~i~~~~~D~~~  279 (373)
T 3tm4_A          203 KASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAG--VLDKIKFIQGDATQ  279 (373)
T ss_dssp             CHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTT--CGGGCEEEECCGGG
T ss_pred             cHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhh
Confidence            455556666665 567889999999999999999998766699999999999999999999887  34689999999999


Q ss_pred             CCCCCCccceEEecchhccC-------CCH-HHHHHHHHHhcccCcEEEEEEe
Q 021975          231 LPFASGFVDAVHAGAALHCW-------PSP-SNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~-------~d~-~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +++++++||+|+++..+...       .+. ..+++++.++|  ||.+++.+.
T Consensus       280 ~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~  330 (373)
T 3tm4_A          280 LSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT  330 (373)
T ss_dssp             GGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES
T ss_pred             CCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence            98888899999996543321       111 56788899988  555555553

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.40  E-value=1.7e-12  Score=122.93  Aligned_cols=119  Identities=18%  Similarity=0.168  Sum_probs=94.8

Q ss_pred             HHHhhccc--CCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC-
Q 021975          158 AQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-  233 (304)
Q Consensus       158 l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-  233 (304)
                      +...+...  ++.+|||+|||+|..+..+++.. ....|+++|+++.+++.++++++..+.   .++.++++|+..++. 
T Consensus       107 ~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~---~nv~~~~~D~~~~~~~  183 (479)
T 2frx_A          107 PVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI---SNVALTHFDGRVFGAA  183 (479)
T ss_dssp             HHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCCSTTHHHH
T ss_pred             HHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCCHHHhhhh
Confidence            34455555  78899999999999999999874 246999999999999999999988772   579999999988753 


Q ss_pred             CCCccceEEec------chhccCCC----------------HHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          234 ASGFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       234 ~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      ..++||+|++.      .++.+.++                ...+|+++.++|||||+|+++|..-..
T Consensus       184 ~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~  251 (479)
T 2frx_A          184 VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQ  251 (479)
T ss_dssp             STTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSS
T ss_pred             ccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCc
Confidence            45789999972      34444433                236899999999999999998875533

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.39  E-value=1.1e-12  Score=109.60  Aligned_cols=107  Identities=16%  Similarity=0.241  Sum_probs=79.3

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      .+++..+-...++.+|||+|||+|.++..+++.+  .+|+|+|+++..              ...++.++++|+.+.+..
T Consensus        14 ~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~--~~V~gvD~~~~~--------------~~~~v~~~~~D~~~~~~~   77 (191)
T 3dou_A           14 EFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLA--RKIISIDLQEME--------------EIAGVRFIRCDIFKETIF   77 (191)
T ss_dssp             HHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTC--SEEEEEESSCCC--------------CCTTCEEEECCTTSSSHH
T ss_pred             HHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcC--CcEEEEeccccc--------------cCCCeEEEEccccCHHHH
Confidence            3444444334568899999999999999999884  499999999741              236799999999886421


Q ss_pred             -------C----CccceEEecchhccCC-----------CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 -------S----GFVDAVHAGAALHCWP-----------SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 -------~----~~fD~V~~~~vl~h~~-----------d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                             .    ++||+|++........           ....+++.+.++|||||.|++..+..
T Consensus        78 ~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~  142 (191)
T 3dou_A           78 DDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG  142 (191)
T ss_dssp             HHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             HHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence                   1    4899999964322111           12467889999999999999988765

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.38  E-value=9e-13  Score=118.55  Aligned_cols=110  Identities=17%  Similarity=0.083  Sum_probs=86.8

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CccCCCCeEEEEccCCC-CCCCCCccceEE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCR-LPFASGFVDAVH  242 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~  242 (304)
                      ++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...  +.....+++++.+|+.. ++..+++||+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            467999999999999999998855669999999999999999987641  10013689999999866 333467899999


Q ss_pred             ecchhcc-CCC------HHHHHHHHHHhcccCcEEEEEEe
Q 021975          243 AGAALHC-WPS------PSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       243 ~~~vl~h-~~d------~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +....++ ...      ...+++++.++|||||++++...
T Consensus       157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  196 (314)
T 1uir_A          157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (314)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence            9765433 112      26889999999999999998753

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.38  E-value=3.8e-12  Score=106.51  Aligned_cols=96  Identities=14%  Similarity=0.141  Sum_probs=75.1

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      ..++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.++++.        .++.++++|+.+++   ++||+|++
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~--------~~~~~~~~d~~~~~---~~~D~v~~  116 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNC--------GGVNFMVADVSEIS---GKYDTWIM  116 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHC--------TTSEEEECCGGGCC---CCEEEEEE
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhc--------CCCEEEECcHHHCC---CCeeEEEE
Confidence            3457899999999999999999884 347999999999999999864        26899999998865   68999999


Q ss_pred             cchhccCCC--HHHHHHHHHHhcccCcEEEEEE
Q 021975          244 GAALHCWPS--PSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       244 ~~vl~h~~d--~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ...++|+.+  ...+++++.+++  |+ +++..
T Consensus       117 ~~p~~~~~~~~~~~~l~~~~~~~--g~-~~~~~  146 (200)
T 1ne2_A          117 NPPFGSVVKHSDRAFIDKAFETS--MW-IYSIG  146 (200)
T ss_dssp             CCCC-------CHHHHHHHHHHE--EE-EEEEE
T ss_pred             CCCchhccCchhHHHHHHHHHhc--Cc-EEEEE
Confidence            999998864  246899999988  44 44443

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.38  E-value=1.1e-12  Score=118.83  Aligned_cols=109  Identities=17%  Similarity=0.208  Sum_probs=85.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CccCCCCeEEEEccCCCC--CCCCCccce
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL--PFASGFVDA  240 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~l--p~~~~~fD~  240 (304)
                      .++.+|||||||+|..+..+++..+..+|+++|+++.+++.|++++...  ++ ...++.++.+|+...  .+++++||+
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl-~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY-EDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-GSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-CCCcEEEEECCHHHHHHhccCCCccE
Confidence            3467999999999999999998865679999999999999999987642  21 136899999998653  234578999


Q ss_pred             EEecch--hccCCC--HHHHHHHHHHhcccCcEEEEEE
Q 021975          241 VHAGAA--LHCWPS--PSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       241 V~~~~v--l~h~~d--~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      |++...  +++..+  ...+++++.++|||||+|++..
T Consensus       198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            998543  111111  3678999999999999999864

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.38  E-value=5.5e-13  Score=125.42  Aligned_cols=119  Identities=17%  Similarity=0.156  Sum_probs=94.7

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FA  234 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~  234 (304)
                      ++...+...++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.++++++..+.   . +.++++|+..++ +.
T Consensus        92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~---~-v~~~~~Da~~l~~~~  167 (464)
T 3m6w_A           92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA---P-LAVTQAPPRALAEAF  167 (464)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC---C-CEEECSCHHHHHHHH
T ss_pred             HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---e-EEEEECCHHHhhhhc
Confidence            344556667789999999999999999998743 36999999999999999999998872   3 899999987765 23


Q ss_pred             CCccceEEe------cchhccCCCH----------------HHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          235 SGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       235 ~~~fD~V~~------~~vl~h~~d~----------------~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      .++||+|++      ..++.+.++.                ..+++++.++|||||+|+.+|..-..
T Consensus       168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~  234 (464)
T 3m6w_A          168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP  234 (464)
T ss_dssp             CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG
T ss_pred             cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch
Confidence            678999995      2344444433                57899999999999999998865533

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.37  E-value=3e-13  Score=118.72  Aligned_cols=104  Identities=18%  Similarity=0.200  Sum_probs=77.7

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-cCccCCCCeEEE--EccCCCCCCCCCccce
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-DNTILTSNLALV--RADVCRLPFASGFVDA  240 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-~~~~~~~~i~~~--~~d~~~lp~~~~~fD~  240 (304)
                      ..++.+|||+|||+|.++..+++.   .+|+|+|+++ ++..+++.... ..  ...++.++  ++|+..++  +++||+
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~--~~~~v~~~~~~~D~~~l~--~~~fD~  143 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITES--YGWNIVKFKSRVDIHTLP--VERTDV  143 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCB--TTGGGEEEECSCCTTTSC--CCCCSE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhc--cCCCeEEEecccCHhHCC--CCCCcE
Confidence            346789999999999999999987   3999999998 53222211000 00  01168899  99998876  679999


Q ss_pred             EEecchhccCCCHH-------HHHHHHHHhcccCc--EEEEEEeC
Q 021975          241 VHAGAALHCWPSPS-------NAVAEISRILRSGG--VFVGTTFL  276 (304)
Q Consensus       241 V~~~~vl~h~~d~~-------~~l~~~~r~LkpgG--~lvi~~~~  276 (304)
                      |++..+ ++..++.       .+|+++.++|||||  .|++.++.
T Consensus       144 V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          144 IMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             EEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            999877 6555432       37899999999999  99998775

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.37  E-value=1.1e-12  Score=117.53  Aligned_cols=111  Identities=15%  Similarity=0.152  Sum_probs=85.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh--cCccCCCCeEEEEccCCC-CCCCCCccceE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ--DNTILTSNLALVRADVCR-LPFASGFVDAV  241 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~i~~~~~d~~~-lp~~~~~fD~V  241 (304)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++..  .++ ...+++++.+|+.+ ++..+++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~-~~~rv~v~~~Da~~~l~~~~~~fD~I  172 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY-SSSKLTLHVGDGFEFMKQNQDAFDVI  172 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-GCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhccc-CCCcEEEEECcHHHHHhhCCCCceEE
Confidence            346799999999999999999886667999999999999999998765  121 13689999999865 33346789999


Q ss_pred             EecchhccCC----CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          242 HAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       242 ~~~~vl~h~~----d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ++....+..+    ....+++++.++|||||++++....
T Consensus       173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence            9865432211    1246899999999999999987643

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.37  E-value=2.5e-13  Score=119.88  Aligned_cols=104  Identities=20%  Similarity=0.227  Sum_probs=77.6

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-cCccCCCCeEEE--EccCCCCCCCCCccce
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-DNTILTSNLALV--RADVCRLPFASGFVDA  240 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-~~~~~~~~i~~~--~~d~~~lp~~~~~fD~  240 (304)
                      ..++.+|||+|||+|.++..+++. .  +|+|+|+++ ++..+++.... ..  ...++.++  ++|+..++  +++||+
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~-~--~V~gVD~s~-m~~~a~~~~~~~~~--~~~~v~~~~~~~D~~~l~--~~~fD~  151 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ-P--NVREVKAYT-LGTSGHEKPRLVET--FGWNLITFKSKVDVTKME--PFQADT  151 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS-T--TEEEEEEEC-CCCTTSCCCCCCCC--TTGGGEEEECSCCGGGCC--CCCCSE
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc-C--CEEEEECch-hhhhhhhchhhhhh--cCCCeEEEeccCcHhhCC--CCCcCE
Confidence            346789999999999999999988 3  999999998 53333221000 00  01268899  99998876  679999


Q ss_pred             EEecchhccCCCHH-------HHHHHHHHhcccCc--EEEEEEeC
Q 021975          241 VHAGAALHCWPSPS-------NAVAEISRILRSGG--VFVGTTFL  276 (304)
Q Consensus       241 V~~~~vl~h~~d~~-------~~l~~~~r~LkpgG--~lvi~~~~  276 (304)
                      |++..+ ++..++.       .+|+++.++|||||  .|++.++.
T Consensus       152 Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          152 VLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             EEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            999877 5554432       37899999999999  99997765

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.36  E-value=3.4e-12  Score=116.19  Aligned_cols=125  Identities=12%  Similarity=0.105  Sum_probs=97.9

Q ss_pred             CCCcHHHHHHHHHhh----cccCCCeEEEEcCCccHHHHHHHHhCCC-----CeEEEEeCCHHHHHHHHHHHHhcCccCC
Q 021975          148 FPGPDEEFKMAQEYF----KSAQGGLLVDVSCGSGLFSRKFAKSGTY-----SGVVALDFSENMLRQCYDFIKQDNTILT  218 (304)
Q Consensus       148 ~~~~~~~~~~l~~~l----~~~~~~~vLDiGcG~G~~~~~l~~~~~~-----~~v~giD~s~~~~~~a~~~~~~~~~~~~  218 (304)
                      +.++..+...+...+    ...++.+|||+|||+|.++..+++..+.     .+++|+|+++.+++.|+.++...+    
T Consensus       108 ~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g----  183 (344)
T 2f8l_A          108 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR----  183 (344)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT----
T ss_pred             CCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC----
Confidence            566666655544433    3335679999999999999988877532     589999999999999999988776    


Q ss_pred             CCeEEEEccCCCCCCCCCccceEEecchhccCCCHH------------------HHHHHHHHhcccCcEEEEEEeCC
Q 021975          219 SNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS------------------NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       219 ~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~------------------~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .++.++++|.... ...+.||+|+++-.+.+++...                  .+++++.+.|||||++++.++..
T Consensus       184 ~~~~i~~~D~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          184 QKMTLLHQDGLAN-LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             CCCEEEESCTTSC-CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             CCceEEECCCCCc-cccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            3689999998663 3457899999997776654332                  57999999999999999988654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.36  E-value=2.8e-12  Score=114.35  Aligned_cols=110  Identities=13%  Similarity=0.064  Sum_probs=84.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh--cCccCCCCeEEEEccCCC-CCCCCCccceEE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ--DNTILTSNLALVRADVCR-LPFASGFVDAVH  242 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~  242 (304)
                      ++.+|||||||+|..+..+++..+..+++++|+++.+++.|++++..  .+. ...++.++.+|+.. ++..+++||+|+
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF-DDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG-GCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc-CCCceEEEECcHHHHHhhCCCCceEEE
Confidence            45799999999999999999885567999999999999999998754  111 13689999999755 333457899999


Q ss_pred             ecchhccCC-----CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          243 AGAALHCWP-----SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       243 ~~~vl~h~~-----d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +...-..+.     ....+++++.++|||||++++....
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            853211021     2267899999999999999997543

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.36  E-value=3.4e-12  Score=112.43  Aligned_cols=111  Identities=16%  Similarity=0.203  Sum_probs=91.9

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (304)
                      .+.+.+.  ++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.++++++.++  ...++.++++|+.+++. .+
T Consensus       118 ri~~~~~--~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~--v~~~v~~~~~D~~~~~~-~~  191 (278)
T 3k6r_A          118 RMAKVAK--PDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNK--VEDRMSAYNMDNRDFPG-EN  191 (278)
T ss_dssp             HHHHHCC--TTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCTTTCCC-CS
T ss_pred             HHHHhcC--CCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCcHHHhcc-cc
Confidence            3444443  48899999999999999999887 3589999999999999999999998  56789999999988763 57


Q ss_pred             ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .||.|++...    +....++..+.++||+||++.+.++..
T Consensus       192 ~~D~Vi~~~p----~~~~~~l~~a~~~lk~gG~ih~~~~~~  228 (278)
T 3k6r_A          192 IADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             CEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCEEEECCC----CcHHHHHHHHHHHcCCCCEEEEEeeec
Confidence            8999998642    344567889999999999998776654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.36  E-value=1.7e-11  Score=102.89  Aligned_cols=100  Identities=14%  Similarity=0.195  Sum_probs=81.7

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      ..++.+|||+|||+|.++..+++.+. .+++|+|+++.+++.++++.+..+    .++.++++|+.+++   ++||+|++
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~---~~~D~v~~  118 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFK----GKFKVFIGDVSEFN---SRVDIVIM  118 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGT----TSEEEEESCGGGCC---CCCSEEEE
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcC----CCEEEEECchHHcC---CCCCEEEE
Confidence            34678999999999999999998853 479999999999999999988765    27999999998864   48999999


Q ss_pred             cchhccCC--CHHHHHHHHHHhcccCcEEEEE
Q 021975          244 GAALHCWP--SPSNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       244 ~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~  273 (304)
                      ...+++..  ....+++++.+++  ||.+++.
T Consensus       119 ~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          119 NPPFGSQRKHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             CCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             cCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence            88777664  3357889999888  5544433

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.35  E-value=2.6e-12  Score=119.13  Aligned_cols=111  Identities=18%  Similarity=0.205  Sum_probs=90.3

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccC-CCCeEEEEccCCCCCC----CCCccc
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-TSNLALVRADVCRLPF----ASGFVD  239 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-~~~i~~~~~d~~~lp~----~~~~fD  239 (304)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.|+++++.++  . ..++.++++|+.+...    ...+||
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ng--l~~~~v~~~~~D~~~~~~~~~~~~~~fD  295 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFD  295 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTT--CCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECCHHHHHHHHHhcCCCCC
Confidence            357899999999999999999986 4599999999999999999998876  2 2389999999876421    146899


Q ss_pred             eEEecc---------hhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          240 AVHAGA---------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       240 ~V~~~~---------vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      +|++.-         +.++..+...++.++.++|+|||++++.+....
T Consensus       296 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  343 (396)
T 3c0k_A          296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL  343 (396)
T ss_dssp             EEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            999963         223335567889999999999999999887653

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.35  E-value=9.6e-13  Score=118.24  Aligned_cols=107  Identities=13%  Similarity=0.132  Sum_probs=82.6

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CccCCCCeEEEEccCCC-CCCCCCccceEE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCR-LPFASGFVDAVH  242 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~  242 (304)
                      ++.+|||||||+|..+..+++..+..+++++|+++.+++.|++++...  ++ ...++.++.+|+.. ++..+++||+|+
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~-~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF-SHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG-GCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcccc-CCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            457999999999999999998866679999999999999999988653  11 13689999999865 333467899999


Q ss_pred             ecchhccCCCH-----HHHHHHHHHhcccCcEEEEEE
Q 021975          243 AGAALHCWPSP-----SNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       243 ~~~vl~h~~d~-----~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +... +++...     ..+++++.++|||||++++..
T Consensus       187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            8653 332211     578999999999999999875

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.35  E-value=1.7e-12  Score=115.05  Aligned_cols=112  Identities=13%  Similarity=0.146  Sum_probs=86.6

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc-cCCCCeEEEEccCCCC-CCCCCccceEE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-PFASGFVDAVH  242 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p~~~~~fD~V~  242 (304)
                      .++.+|||||||+|..+..+++..+..+++++|+++.+++.|++++...+. ...+++.++.+|+.+. +..+++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            346799999999999999999886667999999999999999998764310 0136899999998653 22357899999


Q ss_pred             ecchhccCCCH----HHHHHHHHHhcccCcEEEEEEeC
Q 021975          243 AGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       243 ~~~vl~h~~d~----~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +....++.+..    ..+++++.++|||||++++....
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  194 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence            95433222211    58899999999999999987543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.34  E-value=2.6e-12  Score=113.41  Aligned_cols=110  Identities=15%  Similarity=0.175  Sum_probs=86.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CccCCCCeEEEEccCCC-CCCCCCccceEE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCR-LPFASGFVDAVH  242 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~  242 (304)
                      ++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...  ++ ..++++++.+|+.. ++..+++||+|+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~-~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL-DDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT-TSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc-CCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            467999999999999999998754569999999999999999987542  11 24689999999865 333457899999


Q ss_pred             ecchhccCCC----HHHHHHHHHHhcccCcEEEEEEeC
Q 021975          243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       243 ~~~vl~h~~d----~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +....+..+.    ...+++++.++|||||++++....
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            9654322211    257899999999999999987543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.33  E-value=2.3e-12  Score=116.23  Aligned_cols=109  Identities=13%  Similarity=0.136  Sum_probs=85.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CccCCCCeEEEEccCCCC-CCCCCccceEE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PFASGFVDAVH  242 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~  242 (304)
                      ++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...  +. ...+++++.+|+.+. +..+++||+|+
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY-EDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGG-GSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-CCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            467999999999999999998755679999999999999999987652  11 136899999998652 22357899999


Q ss_pred             ecchhccCC---C--HHHHHHHHHHhcccCcEEEEEEeC
Q 021975          243 AGAALHCWP---S--PSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       243 ~~~vl~h~~---d--~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +... +++.   .  ...+++++.++|||||++++....
T Consensus       195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            8642 2221   1  168899999999999999997643

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.33  E-value=2.3e-12  Score=119.57  Aligned_cols=110  Identities=15%  Similarity=0.134  Sum_probs=89.6

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC----CCCccceE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAV  241 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~V  241 (304)
                      ++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.|+++++.+++  ..++.++++|+.+...    ..++||+|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g-~~~v~~vD~s~~~l~~a~~n~~~n~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V  293 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGV--EDRMKFIVGSAFEEMEKLQKKGEKFDIV  293 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCC--CccceEEECCHHHHHHHHHhhCCCCCEE
Confidence            57899999999999999999884 35999999999999999999998872  3389999999876431    25689999


Q ss_pred             Eecc---------hhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          242 HAGA---------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       242 ~~~~---------vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++.-         +.++..+...++.++.++|||||++++.+....
T Consensus       294 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  339 (396)
T 2as0_A          294 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  339 (396)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence            9953         223334556789999999999999999887653

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.33  E-value=1.8e-12  Score=119.72  Aligned_cols=111  Identities=16%  Similarity=0.119  Sum_probs=86.9

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCC-CeEEEEccCCCC-C-C--CCCccc
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRL-P-F--ASGFVD  239 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~-~i~~~~~d~~~l-p-~--~~~~fD  239 (304)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++.+++  .. ++.++++|+.+. + .  ...+||
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~--~~~~v~~~~~D~~~~l~~~~~~~~~fD  287 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHL--DMANHQLVVMDVFDYFKYARRHHLTYD  287 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTC--CCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC--CccceEEEECCHHHHHHHHHHhCCCcc
Confidence            357899999999999999999865 34899999999999999999998872  33 899999998652 2 1  245899


Q ss_pred             eEEecchh-----ccCCCH----HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          240 AVHAGAAL-----HCWPSP----SNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       240 ~V~~~~vl-----~h~~d~----~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      +|++.-..     .++.+.    ..+++++.++|+|||+|++.+....
T Consensus       288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~  335 (385)
T 2b78_A          288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  335 (385)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence            99985322     233333    3567888999999999999887653

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.31  E-value=1.4e-12  Score=113.17  Aligned_cols=115  Identities=9%  Similarity=0.144  Sum_probs=86.4

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      .....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.++++++.     ..++.++++|+.+
T Consensus        15 d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~   87 (244)
T 1qam_A           15 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQ   87 (244)
T ss_dssp             CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGG
T ss_pred             CHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCC--eEEEEECCHHHHHHHHHhhcc-----CCCeEEEEChHHh
Confidence            345556677777666788999999999999999999975  999999999999999998753     2579999999999


Q ss_pred             CCCCC-CccceEEe----------cchhccCCCHHHHH----HHHHHhcccCcEEEE
Q 021975          231 LPFAS-GFVDAVHA----------GAALHCWPSPSNAV----AEISRILRSGGVFVG  272 (304)
Q Consensus       231 lp~~~-~~fD~V~~----------~~vl~h~~d~~~~l----~~~~r~LkpgG~lvi  272 (304)
                      +++++ ..|++|..          ...++|...+..++    +.+.|+++++|.+.+
T Consensus        88 ~~~~~~~~~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~v  144 (244)
T 1qam_A           88 FKFPKNQSYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLAL  144 (244)
T ss_dssp             CCCCSSCCCEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHHH
T ss_pred             CCcccCCCeEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchhH
Confidence            88764 45643322          23445544444445    558899999986543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.31  E-value=6.6e-12  Score=107.23  Aligned_cols=102  Identities=14%  Similarity=0.110  Sum_probs=84.1

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .++.+|||||||.|.++..+.   +..+++|+|+++.+++.+++++...+    .+..+..+|....+.+ ++||+|++.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g----~~~~~~v~D~~~~~~~-~~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKD----WDFTFALQDVLCAPPA-EAGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTT----CEEEEEECCTTTSCCC-CBCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcC----CCceEEEeecccCCCC-CCcchHHHH
Confidence            457799999999999998888   45699999999999999999988765    7889999999887765 589999999


Q ss_pred             chhccCCCHH-HHHHHHHHhcccCcEEEEEE
Q 021975          245 AALHCWPSPS-NAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       245 ~vl~h~~d~~-~~l~~~~r~LkpgG~lvi~~  274 (304)
                      -++||+.+.. ...-++...|+++|+++-..
T Consensus       176 k~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          176 KLLPLLEREQAGSAMALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             SCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred             HHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence            8888875332 23338888999998766655

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.31  E-value=3.9e-12  Score=111.43  Aligned_cols=99  Identities=12%  Similarity=0.069  Sum_probs=82.6

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      .+.+|||||||+|..+..+.+. + .+++++|+++.+++.|++++...  +. ..+++.++.+|.....   ++||+|++
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~-~~~rv~~~~~D~~~~~---~~fD~Ii~  145 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVK-NNKNFTHAKQLLDLDI---KKYDLIFC  145 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHH-TCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhcccc-CCCeEEEEechHHHHH---hhCCEEEE
Confidence            4579999999999999999988 5 79999999999999999876431  10 1368999999987754   78999998


Q ss_pred             cchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .     ..+|..+++++.++|||||++++...
T Consensus       146 d-----~~dp~~~~~~~~~~L~pgG~lv~~~~  172 (262)
T 2cmg_A          146 L-----QEPDIHRIDGLKRMLKEDGVFISVAK  172 (262)
T ss_dssp             S-----SCCCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             C-----CCChHHHHHHHHHhcCCCcEEEEEcC
Confidence            6     35778899999999999999998653

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.31  E-value=2.2e-12  Score=119.07  Aligned_cols=108  Identities=19%  Similarity=0.226  Sum_probs=87.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC----CCCccceE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAV  241 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~V  241 (304)
                      ++.+|||+|||+|.++..++...  .+|+|+|+++.+++.|+++++.++.   .++.++++|+.+...    ...+||+|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~n~~~n~~---~~~~~~~~d~~~~~~~~~~~~~~fD~I  283 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENARLNGL---GNVRVLEANAFDLLRRLEKEGERFDLV  283 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHHHTTC---TTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCC---CCceEEECCHHHHHHHHHhcCCCeeEE
Confidence            56799999999999999999884  4999999999999999999998873   459999999876431    15689999


Q ss_pred             Eecch---------hccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          242 HAGAA---------LHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       242 ~~~~v---------l~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++.-.         .++..+...++.++.++|+|||+|++.+....
T Consensus       284 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  329 (382)
T 1wxx_A          284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH  329 (382)
T ss_dssp             EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            98432         12223446789999999999999999987653

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.31  E-value=7.4e-12  Score=123.92  Aligned_cols=109  Identities=18%  Similarity=0.235  Sum_probs=90.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCC-CCeEEEEccCCC-CCCCCCccceEEe
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRADVCR-LPFASGFVDAVHA  243 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~-~~i~~~~~d~~~-lp~~~~~fD~V~~  243 (304)
                      ++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.++++++.+++  . .++.++++|+.+ ++...++||+|++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl--~~~~v~~i~~D~~~~l~~~~~~fD~Ii~  615 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGL--TGRAHRLIQADCLAWLREANEQFDLIFI  615 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTC--CSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCC--CccceEEEecCHHHHHHhcCCCccEEEE
Confidence            578999999999999999998764 4799999999999999999998873  3 479999999876 3444678999998


Q ss_pred             cc-----------hhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          244 GA-----------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       244 ~~-----------vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .-           ++++..+...++.++.++|||||+|++.+..+
T Consensus       616 DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~  660 (703)
T 3v97_A          616 DPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR  660 (703)
T ss_dssp             CCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             CCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence            53           23334455678999999999999999888664

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.30  E-value=3.4e-12  Score=110.05  Aligned_cols=104  Identities=15%  Similarity=0.137  Sum_probs=89.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      +..+|||||||+|.++..++...+..+|+++|+++.+++.+++++..++    .+..+...|...-+ +.+.||+|++.-
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g----~~~~~~v~D~~~~~-p~~~~DvaL~lk  206 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN----VPHRTNVADLLEDR-LDEPADVTLLLK  206 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT----CCEEEEECCTTTSC-CCSCCSEEEETT
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC----CCceEEEeeecccC-CCCCcchHHHHH
Confidence            3679999999999999999988788899999999999999999998877    55888999987655 467899999999


Q ss_pred             hhccCCCHH--HHHHHHHHhcccCcEEEEEEe
Q 021975          246 ALHCWPSPS--NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       246 vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +++|+.+..  ..+ ++...|+++|+++-..-
T Consensus       207 ti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~  237 (281)
T 3lcv_B          207 TLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT  237 (281)
T ss_dssp             CHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred             HHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence            999997553  344 89999999998876665

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.30  E-value=3.9e-12  Score=112.62  Aligned_cols=107  Identities=13%  Similarity=0.127  Sum_probs=83.2

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--Ccc------CCCCeEEEEccCCCC-CCCC
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTI------LTSNLALVRADVCRL-PFAS  235 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~------~~~~i~~~~~d~~~l-p~~~  235 (304)
                      .++.+|||||||+|.++..+++. +..+++++|+++.+++.|++++ ..  ++.      ...++.++.+|+.+. +. +
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~  150 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-N  150 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-C
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-c
Confidence            34679999999999999999988 5679999999999999999987 32  100      136899999997542 22 5


Q ss_pred             CccceEEecchhccCCC-----HHHHHHHHHHhcccCcEEEEEEe
Q 021975          236 GFVDAVHAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d-----~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ++||+|++.... ++..     ...+++++.++|||||++++...
T Consensus       151 ~~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  194 (281)
T 1mjf_A          151 RGFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  194 (281)
T ss_dssp             CCEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            789999986543 2211     25789999999999999998753

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.29  E-value=1.8e-12  Score=121.78  Aligned_cols=120  Identities=16%  Similarity=0.152  Sum_probs=93.5

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FA  234 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~  234 (304)
                      ++...+...++.+|||+|||+|..+..++... ...+|+++|+++.+++.++++++..+.   .++.++.+|+..++ ..
T Consensus        96 l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~---~nv~v~~~Da~~l~~~~  172 (456)
T 3m4x_A           96 IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV---SNAIVTNHAPAELVPHF  172 (456)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC---SSEEEECCCHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCCHHHhhhhc
Confidence            34455666778999999999999999998863 246999999999999999999998873   57999999987754 23


Q ss_pred             CCccceEEecc------hhccCCCH----------------HHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          235 SGFVDAVHAGA------ALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       235 ~~~fD~V~~~~------vl~h~~d~----------------~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      +++||+|++..      ++.+-++.                ..+|+++.++|||||+|+.+|..-..
T Consensus       173 ~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  239 (456)
T 3m4x_A          173 SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP  239 (456)
T ss_dssp             TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG
T ss_pred             cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc
Confidence            57899999742      33322211                26799999999999999998876533

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.29  E-value=6.5e-12  Score=116.14  Aligned_cols=108  Identities=16%  Similarity=0.058  Sum_probs=84.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CCCCccceEEec
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG  244 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~  244 (304)
                      ++.+|||+|||+|.++..+++.+.  +|+++|+|+.+++.++++++.++.    ...+.++|+.+.. ...+.||+|++.
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~----~~~~~~~D~~~~l~~~~~~fD~Ii~d  287 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGL----RVDIRHGEALPTLRGLEGPFHHVLLD  287 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC----CCEEEESCHHHHHHTCCCCEEEEEEC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCC----CCcEEEccHHHHHHHhcCCCCEEEEC
Confidence            478999999999999999999876  699999999999999999998872    2356688886532 113349999985


Q ss_pred             chhcc---------CCCHHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          245 AALHC---------WPSPSNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       245 ~vl~h---------~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      ....+         ..+...+++.+.++|||||+|++.+.....
T Consensus       288 pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~  331 (393)
T 4dmg_A          288 PPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHL  331 (393)
T ss_dssp             CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC
Confidence            43211         123357899999999999999988876643

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.28  E-value=2.1e-11  Score=110.55  Aligned_cols=101  Identities=20%  Similarity=0.201  Sum_probs=85.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ++.+|||+|||+|.++.. ++.  ..+|+|+|+|+.+++.++++++.++  ...++.++++|+.+..   ++||+|++..
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~~--~~~V~~vD~s~~ai~~a~~n~~~n~--l~~~v~~~~~D~~~~~---~~fD~Vi~dp  266 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CKN--AKKIYAIDINPHAIELLKKNIKLNK--LEHKIIPILSDVREVD---VKGNRVIMNL  266 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TTT--SSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCGGGCC---CCEEEEEECC
T ss_pred             CCCEEEEccCccCHHHHh-ccC--CCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECChHHhc---CCCcEEEECC
Confidence            578999999999999999 773  4599999999999999999999887  3458999999998765   7899999963


Q ss_pred             hhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      .-    ....+++++.++|+|||++++.++...
T Consensus       267 P~----~~~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          267 PK----FAHKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             TT----TGGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             cH----hHHHHHHHHHHHcCCCCEEEEEEeecC
Confidence            21    123789999999999999999887664

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.26  E-value=1.8e-11  Score=115.25  Aligned_cols=129  Identities=15%  Similarity=0.134  Sum_probs=102.5

Q ss_pred             CCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-------------CCCeEEEEeCCHHHHHHHHHHHHhc
Q 021975          147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-------------TYSGVVALDFSENMLRQCYDFIKQD  213 (304)
Q Consensus       147 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-------------~~~~v~giD~s~~~~~~a~~~~~~~  213 (304)
                      .++++....+.+.+.+.+.++.+|||+|||+|.++..+.+..             ...+++|+|+++.+++.|+.++..+
T Consensus       152 ~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~  231 (445)
T 2okc_A          152 QYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH  231 (445)
T ss_dssp             GGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT
T ss_pred             cccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHh
Confidence            367888889999988887778899999999999998887642             1248999999999999999998877


Q ss_pred             CccCCCCeEEEEccCCCCCCCCCccceEEecchhccCCC-----------------HHHHHHHHHHhcccCcEEEEEEeC
Q 021975          214 NTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPS-----------------PSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       214 ~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d-----------------~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +. ...++.+.++|....+.. ..||+|+++-.+.+...                 ...+++.+.++|||||+++++++.
T Consensus       232 g~-~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          232 GI-GTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             TC-CSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             CC-CcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence            62 011678899998776643 48999999866554321                 137899999999999999988865


Q ss_pred             C
Q 021975          277 R  277 (304)
Q Consensus       277 ~  277 (304)
                      .
T Consensus       310 ~  310 (445)
T 2okc_A          310 N  310 (445)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.24  E-value=1.3e-11  Score=110.26  Aligned_cols=109  Identities=17%  Similarity=0.270  Sum_probs=80.8

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.++++++..+   ..++.++.+|+..+
T Consensus        28 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~--~v~~vDi~~~~~~~a~~~~~~~~---~~~v~~~~~D~~~~  102 (299)
T 2h1r_A           28 PGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK--KVITIDIDSRMISEVKKRCLYEG---YNNLEVYEGDAIKT  102 (299)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS--EEEEECSCHHHHHHHHHHHHHTT---CCCEEC----CCSS
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC---CCceEEEECchhhC
Confidence            44556666677766788999999999999999998865  99999999999999999887654   26899999999888


Q ss_pred             CCCCCccceEEecchhccCCCHH--HHH---------------HHHHHhcccCc
Q 021975          232 PFASGFVDAVHAGAALHCWPSPS--NAV---------------AEISRILRSGG  268 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~--~~l---------------~~~~r~LkpgG  268 (304)
                      +++  +||+|+++...+ +..+.  .++               +.+.|+++++|
T Consensus       103 ~~~--~~D~Vv~n~py~-~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G  153 (299)
T 2h1r_A          103 VFP--KFDVCTANIPYK-ISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG  153 (299)
T ss_dssp             CCC--CCSEEEEECCGG-GHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred             Ccc--cCCEEEEcCCcc-cccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence            753  799999964433 22221  222               45678888877

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.24  E-value=6e-14  Score=121.77  Aligned_cols=114  Identities=11%  Similarity=0.165  Sum_probs=88.4

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      ..+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.++++.+.     ..++.++++|+.++++
T Consensus        17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~--~v~~id~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~   89 (245)
T 1yub_A           17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQF   89 (245)
T ss_dssp             THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTTC
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHhcc-----CCceEEEECChhhcCc
Confidence            345566666666778999999999999999999874  999999999999988876541     2579999999999887


Q ss_pred             CC-CccceEEec-----------chhccCCCHHHHH----HHHHHhcccCcEEEEEEe
Q 021975          234 AS-GFVDAVHAG-----------AALHCWPSPSNAV----AEISRILRSGGVFVGTTF  275 (304)
Q Consensus       234 ~~-~~fD~V~~~-----------~vl~h~~d~~~~l----~~~~r~LkpgG~lvi~~~  275 (304)
                      ++ ++| .|+++           .+++|..+...++    +.+.++|||||.+++...
T Consensus        90 ~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~  146 (245)
T 1yub_A           90 PNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH  146 (245)
T ss_dssp             CCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred             ccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence            64 678 55553           2344555555566    779999999998777554

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.23  E-value=9.9e-11  Score=109.77  Aligned_cols=112  Identities=16%  Similarity=0.206  Sum_probs=85.5

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC---
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---  230 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---  230 (304)
                      +.+.+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++.+.+++   .++.|+++|+.+   
T Consensus       274 l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~--~V~gvD~s~~al~~A~~n~~~~~~---~~v~f~~~d~~~~l~  348 (433)
T 1uwv_A          274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNGL---QNVTFYHENLEEDVT  348 (433)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCTTSCCS
T ss_pred             HHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHHHHcCC---CceEEEECCHHHHhh
Confidence            445555566656678999999999999999998854  999999999999999999988763   489999999977   


Q ss_pred             -CCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          231 -LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       231 -lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                       +++.+++||+|++.---...   ..+++.+. .++|+++++++.
T Consensus       349 ~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~-~~~p~~ivyvsc  389 (433)
T 1uwv_A          349 KQPWAKNGFDKVLLDPARAGA---AGVMQQII-KLEPIRIVYVSC  389 (433)
T ss_dssp             SSGGGTTCCSEEEECCCTTCC---HHHHHHHH-HHCCSEEEEEES
T ss_pred             hhhhhcCCCCEEEECCCCccH---HHHHHHHH-hcCCCeEEEEEC
Confidence             34556789999985322111   23455544 378888887765

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.23  E-value=4.3e-12  Score=113.59  Aligned_cols=103  Identities=15%  Similarity=0.102  Sum_probs=74.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeC----CHHHHHHHHHHHHhcCccCCCCeEEEEc-cCCCCCCCCCccc
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF----SENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVD  239 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~----s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD  239 (304)
                      .++.+|||+|||+|.++..+++. .  +|+|+|+    ++.+++.+.  .+..   ...++.++++ |+..++  ..+||
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~-~--~V~gvD~~~~~~~~~~~~~~--~~~~---~~~~v~~~~~~D~~~l~--~~~fD  150 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL-K--NVREVKGLTKGGPGHEEPIP--MSTY---GWNLVRLQSGVDVFFIP--PERCD  150 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS-T--TEEEEEEECCCSTTSCCCCC--CCST---TGGGEEEECSCCTTTSC--CCCCS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc-C--CEEEEeccccCchhHHHHHH--hhhc---CCCCeEEEeccccccCC--cCCCC
Confidence            45789999999999999999988 3  8999999    554332110  0100   1256899999 888775  56899


Q ss_pred             eEEecchhc---cCCCHH---HHHHHHHHhcccCcEEEEEEeCC
Q 021975          240 AVHAGAALH---CWPSPS---NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       240 ~V~~~~vl~---h~~d~~---~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +|++..+++   +..+..   .+|.++.++|||||.|++..+..
T Consensus       151 ~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             EEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            999976643   222222   47899999999999999876644

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.20  E-value=2.3e-10  Score=106.88  Aligned_cols=100  Identities=17%  Similarity=0.171  Sum_probs=79.7

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      ..++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.|+++.+.+++   . +.++.+|+.++.. . +||+|++
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~~--~V~gvD~s~~ai~~A~~n~~~ngl---~-v~~~~~d~~~~~~-~-~fD~Vv~  359 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRGF--NVKGFDSNEFAIEMARRNVEINNV---D-AEFEVASDREVSV-K-GFDTVIV  359 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC---C-EEEEECCTTTCCC-T-TCSEEEE
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCC---c-EEEEECChHHcCc-c-CCCEEEE
Confidence            34578999999999999999999865  999999999999999999988762   3 9999999988753 2 8999999


Q ss_pred             cchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      .-.-..  ....+++.+. .|+|||+++++.
T Consensus       360 dPPr~g--~~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          360 DPPRAG--LHPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             CCCTTC--SCHHHHHHHH-HHCCSEEEEEES
T ss_pred             cCCccc--hHHHHHHHHH-hcCCCcEEEEEC
Confidence            543211  1134566554 599999999875

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.17  E-value=1.2e-10  Score=103.43  Aligned_cols=90  Identities=12%  Similarity=0.226  Sum_probs=76.9

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      .....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++..     ..++.++++|+.+
T Consensus        35 d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~--~V~aVEid~~li~~a~~~~~~-----~~~v~vi~gD~l~  107 (295)
T 3gru_A           35 DKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK--KVYVIEIDKSLEPYANKLKEL-----YNNIEIIWGDALK  107 (295)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCGGGHHHHHHHHHH-----CSSEEEEESCTTT
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHhcc-----CCCeEEEECchhh
Confidence            345566777777777788999999999999999999865  999999999999999998863     2589999999999


Q ss_pred             CCCCCCccceEEecchh
Q 021975          231 LPFASGFVDAVHAGAAL  247 (304)
Q Consensus       231 lp~~~~~fD~V~~~~vl  247 (304)
                      +++++.+||+|+++...
T Consensus       108 ~~~~~~~fD~Iv~NlPy  124 (295)
T 3gru_A          108 VDLNKLDFNKVVANLPY  124 (295)
T ss_dssp             SCGGGSCCSEEEEECCG
T ss_pred             CCcccCCccEEEEeCcc
Confidence            88888889999987543

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.17  E-value=6.2e-11  Score=110.37  Aligned_cols=119  Identities=18%  Similarity=0.210  Sum_probs=91.3

Q ss_pred             CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEE
Q 021975          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV  224 (304)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~  224 (304)
                      ..+.++..+.+.+.+.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|            .++.++
T Consensus        19 g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------~~~~~~   86 (421)
T 2ih2_A           19 GRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGI   86 (421)
T ss_dssp             --CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEE
T ss_pred             ceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------CCCcEE
Confidence            3456778888888888876567799999999999999999863 456999999999887655            358899


Q ss_pred             EccCCCCCCCCCccceEEecchhc----------cCCCH-------------------HHHHHHHHHhcccCcEEEEEEe
Q 021975          225 RADVCRLPFASGFVDAVHAGAALH----------CWPSP-------------------SNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       225 ~~d~~~lp~~~~~fD~V~~~~vl~----------h~~d~-------------------~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ++|+...+. .++||+|+++-...          |+.+.                   ..+++.+.++|+|||++++.++
T Consensus        87 ~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p  165 (421)
T 2ih2_A           87 LADFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  165 (421)
T ss_dssp             ESCGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eCChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            999977643 46899999952211          12111                   1568999999999999999987


Q ss_pred             CC
Q 021975          276 LR  277 (304)
Q Consensus       276 ~~  277 (304)
                      ..
T Consensus       166 ~~  167 (421)
T 2ih2_A          166 AT  167 (421)
T ss_dssp             GG
T ss_pred             hH
Confidence            65

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.16  E-value=1.6e-10  Score=106.78  Aligned_cols=126  Identities=12%  Similarity=0.055  Sum_probs=95.5

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCC--------------------------------------
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------  190 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------------  190 (304)
                      +..+.+...+.......++..|||++||+|.++..++..+.+                                      
T Consensus       184 pl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  263 (393)
T 3k0b_A          184 PIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP  263 (393)
T ss_dssp             SCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence            444566666666666667789999999999999888875432                                      


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhc-cC---CCHHHHHHHHHHhccc
Q 021975          191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH-CW---PSPSNAVAEISRILRS  266 (304)
Q Consensus       191 ~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~---~d~~~~l~~~~r~Lkp  266 (304)
                      .+++|+|+++.+++.|+++++..+  ....+.++++|+.+++.+ .+||+|+++--.. .+   .+...+.+++.+.||+
T Consensus       264 ~~V~GvDid~~al~~Ar~Na~~~g--l~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~  340 (393)
T 3k0b_A          264 LNIIGGDIDARLIEIAKQNAVEAG--LGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR  340 (393)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTT--CTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc
Confidence            469999999999999999999887  445799999999988764 5899999983321 11   1234566667777776


Q ss_pred             --CcEEEEEEeCC
Q 021975          267 --GGVFVGTTFLR  277 (304)
Q Consensus       267 --gG~lvi~~~~~  277 (304)
                        ||.+++.+...
T Consensus       341 ~~g~~~~iit~~~  353 (393)
T 3k0b_A          341 MPTWSVYVLTSYE  353 (393)
T ss_dssp             CTTCEEEEEECCT
T ss_pred             CCCCEEEEEECCH
Confidence              89988888654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.16  E-value=1.5e-10  Score=106.88  Aligned_cols=126  Identities=14%  Similarity=0.086  Sum_probs=96.7

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCC--------------------------------------
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------  190 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------------  190 (304)
                      +..+.+...+.......++..|||++||+|.++..++..+.+                                      
T Consensus       178 pl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  257 (385)
T 3ldu_A          178 PIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK  257 (385)
T ss_dssp             CCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred             CCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence            334556666666666667889999999999999888776422                                      


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhc-cC---CCHHHHHHHHHHhccc
Q 021975          191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH-CW---PSPSNAVAEISRILRS  266 (304)
Q Consensus       191 ~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~---~d~~~~l~~~~r~Lkp  266 (304)
                      .+|+|+|+++.+++.|+++++.++  ....+.+.++|+.+++.+ .+||+|+++--.. .+   .+...+.+++.+.||+
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~~~g--l~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~  334 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAEIAG--VDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK  334 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh
Confidence            479999999999999999999887  345799999999988754 5899999965432 11   2334567777778877


Q ss_pred             --CcEEEEEEeCC
Q 021975          267 --GGVFVGTTFLR  277 (304)
Q Consensus       267 --gG~lvi~~~~~  277 (304)
                        ||.+++.+...
T Consensus       335 ~~g~~~~iit~~~  347 (385)
T 3ldu_A          335 LKNWSYYLITSYE  347 (385)
T ss_dssp             SBSCEEEEEESCT
T ss_pred             CCCCEEEEEECCH
Confidence              88888888654

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.15  E-value=3.1e-10  Score=104.50  Aligned_cols=126  Identities=13%  Similarity=0.065  Sum_probs=96.8

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCC--------------------------------------
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------  190 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------------  190 (304)
                      +..+.+...+.......++..+||.+||+|.++..++..+.+                                      
T Consensus       177 pl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  256 (384)
T 3ldg_A          177 PIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ  256 (384)
T ss_dssp             CCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence            334556666666666667889999999999999888865432                                      


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhc-cCC---CHHHHHHHHHHhccc
Q 021975          191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH-CWP---SPSNAVAEISRILRS  266 (304)
Q Consensus       191 ~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~~---d~~~~l~~~~r~Lkp  266 (304)
                      .+++|+|+++.+++.|+++++..+  ....+.++++|+.+++.+ .+||+|+++--.. .+.   +...+.+++.+.||+
T Consensus       257 ~~v~GvDid~~al~~Ar~Na~~~g--l~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~  333 (384)
T 3ldg_A          257 LDISGFDFDGRMVEIARKNAREVG--LEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAP  333 (384)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh
Confidence            469999999999999999999888  456799999999988764 4899999973321 122   334567777778877


Q ss_pred             --CcEEEEEEeCC
Q 021975          267 --GGVFVGTTFLR  277 (304)
Q Consensus       267 --gG~lvi~~~~~  277 (304)
                        ||.+++.+...
T Consensus       334 ~~g~~~~iit~~~  346 (384)
T 3ldg_A          334 LKTWSQFILTNDT  346 (384)
T ss_dssp             CTTSEEEEEESCT
T ss_pred             CCCcEEEEEECCH
Confidence              99999888644

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.14  E-value=4e-10  Score=100.88  Aligned_cols=117  Identities=12%  Similarity=0.067  Sum_probs=86.0

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC-
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS-  235 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-  235 (304)
                      +...+...++.+|||+|||+|..+..+++. +...+|+++|+++.+++.++++++..+.   .++.++.+|+..++... 
T Consensus        94 ~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~---~~v~~~~~D~~~~~~~~~  170 (309)
T 2b9e_A           94 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV---SCCELAEEDFLAVSPSDP  170 (309)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCGGGSCTTCG
T ss_pred             HHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCChHhcCcccc
Confidence            344556677889999999999999999886 3346999999999999999999998873   57999999987765322 


Q ss_pred             --CccceEEec------chhccCCC-----------H-------HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          236 --GFVDAVHAG------AALHCWPS-----------P-------SNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       236 --~~fD~V~~~------~vl~h~~d-----------~-------~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                        .+||.|++.      .++..-+|           .       ..+|+.+.++|+ ||+|+.+|..-.
T Consensus       171 ~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~  238 (309)
T 2b9e_A          171 RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC  238 (309)
T ss_dssp             GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred             ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence              579999972      33332222           1       135777777787 999998876543

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.10  E-value=1.3e-10  Score=106.82  Aligned_cols=112  Identities=15%  Similarity=0.213  Sum_probs=84.1

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (304)
                      +.+.+.+.+... +.+|||+|||+|.++..+++...  +|+|+|+++.+++.|+++++.+++   .++.++.+|+.++. 
T Consensus       202 l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~~--~V~gvd~~~~ai~~a~~n~~~ng~---~~v~~~~~d~~~~~~  275 (369)
T 3bt7_A          202 MLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFD--RVLATEIAKPSVAAAQYNIAANHI---DNVQIIRMAAEEFTQ  275 (369)
T ss_dssp             HHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGSS--EEEEECCCHHHHHHHHHHHHHTTC---CSEEEECCCSHHHHH
T ss_pred             HHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC---CceEEEECCHHHHHH
Confidence            344455555433 57899999999999999998765  999999999999999999998873   58999999986642 


Q ss_pred             -CCC--------------CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 -FAS--------------GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 -~~~--------------~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                       +..              .+||+|++.---      ..+..++.+.|+++|.++..+...
T Consensus       276 ~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr------~g~~~~~~~~l~~~g~ivyvsc~p  329 (369)
T 3bt7_A          276 AMNGVREFNRLQGIDLKSYQCETIFVDPPR------SGLDSETEKMVQAYPRILYISCNP  329 (369)
T ss_dssp             HHSSCCCCTTGGGSCGGGCCEEEEEECCCT------TCCCHHHHHHHTTSSEEEEEESCH
T ss_pred             HHhhccccccccccccccCCCCEEEECcCc------cccHHHHHHHHhCCCEEEEEECCH
Confidence             111              379999874211      123567788888999988877543

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.05  E-value=4.2e-10  Score=99.59  Aligned_cols=96  Identities=13%  Similarity=-0.010  Sum_probs=70.4

Q ss_pred             cccCCCeEEEEcC------CccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEE-EEccCCCCCCC
Q 021975          163 KSAQGGLLVDVSC------GSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL-VRADVCRLPFA  234 (304)
Q Consensus       163 ~~~~~~~vLDiGc------G~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~-~~~d~~~lp~~  234 (304)
                      ...++.+|||+||      |+|.  ..+++. ++..+|+|+|+++. +               .++.+ +++|+.+++++
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------------~~v~~~i~gD~~~~~~~  121 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------------SDADSTLIGDCATVHTA  121 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------------CSSSEEEESCGGGCCCS
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------------CCCEEEEECccccCCcc
Confidence            4456789999999      4466  334444 33569999999987 1               25778 99999887764


Q ss_pred             CCccceEEecchhc--------cC---CCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALH--------CW---PSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~--------h~---~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                       ++||+|++....+        +.   .....+++++.++|||||+|++..+..
T Consensus       122 -~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~  174 (290)
T 2xyq_A          122 -NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  174 (290)
T ss_dssp             -SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             -CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence             6899999964322        11   112478999999999999999987654

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.05  E-value=7.6e-10  Score=96.36  Aligned_cols=85  Identities=12%  Similarity=0.196  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.++++++.     ..++.++++|+.++
T Consensus        15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~avEid~~~~~~~~~~~~~-----~~~v~~i~~D~~~~   87 (255)
T 3tqs_A           15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECD--NLALVEIDRDLVAFLQKKYNQ-----QKNITIYQNDALQF   87 (255)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS--EEEEEECCHHHHHHHHHHHTT-----CTTEEEEESCTTTC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHhh-----CCCcEEEEcchHhC
Confidence            45566777777777788999999999999999999875  999999999999999998764     25899999999998


Q ss_pred             CCCC----CccceEEec
Q 021975          232 PFAS----GFVDAVHAG  244 (304)
Q Consensus       232 p~~~----~~fD~V~~~  244 (304)
                      ++++    +.|| |+++
T Consensus        88 ~~~~~~~~~~~~-vv~N  103 (255)
T 3tqs_A           88 DFSSVKTDKPLR-VVGN  103 (255)
T ss_dssp             CGGGSCCSSCEE-EEEE
T ss_pred             CHHHhccCCCeE-EEec
Confidence            7643    4688 5554

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.03  E-value=8e-10  Score=106.26  Aligned_cols=130  Identities=11%  Similarity=0.015  Sum_probs=100.3

Q ss_pred             CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC------------------CCeEEEEeCCHHHHHHHH
Q 021975          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT------------------YSGVVALDFSENMLRQCY  207 (304)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~------------------~~~v~giD~s~~~~~~a~  207 (304)
                      +.++++....+++.+.+.+.++.+|||.+||+|.++..+.+...                  ..+++|+|+++.+++.|+
T Consensus       149 G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~  228 (541)
T 2ar0_A          149 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  228 (541)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             CeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence            44778888888888888877788999999999999888775410                  137999999999999999


Q ss_pred             HHHHhcCccCCC----CeEEEEccCCCCC-CCCCccceEEecchhccCCC--------------HHHHHHHHHHhcccCc
Q 021975          208 DFIKQDNTILTS----NLALVRADVCRLP-FASGFVDAVHAGAALHCWPS--------------PSNAVAEISRILRSGG  268 (304)
Q Consensus       208 ~~~~~~~~~~~~----~i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h~~d--------------~~~~l~~~~r~LkpgG  268 (304)
                      .++..++.  ..    .+.+.++|....+ .....||+|+++-.+.....              ...++..+.+.|||||
T Consensus       229 ~nl~l~gi--~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG  306 (541)
T 2ar0_A          229 MNCLLHDI--EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG  306 (541)
T ss_dssp             HHHHTTTC--CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred             HHHHHhCC--CccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCC
Confidence            99887762  21    2778899986543 34568999999754433221              2368999999999999


Q ss_pred             EEEEEEeCC
Q 021975          269 VFVGTTFLR  277 (304)
Q Consensus       269 ~lvi~~~~~  277 (304)
                      ++.++.+..
T Consensus       307 r~a~V~p~~  315 (541)
T 2ar0_A          307 RAAVVVPDN  315 (541)
T ss_dssp             EEEEEEEHH
T ss_pred             EEEEEecCc
Confidence            999988754

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.00  E-value=8.4e-10  Score=101.46  Aligned_cols=102  Identities=16%  Similarity=0.194  Sum_probs=82.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc---------------CccCCCCeEEEEccCCC
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---------------NTILTSNLALVRADVCR  230 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~~~i~~~~~d~~~  230 (304)
                      ++.+|||+|||+|..+..+++..+..+|+++|+++.+++.++++++.+               ++   .++.++++|+..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl---~~i~v~~~Da~~  123 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE---KTIVINHDDANR  123 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS---SEEEEEESCHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC---CceEEEcCcHHH
Confidence            578999999999999999998854568999999999999999999987               52   349999999866


Q ss_pred             CCC-CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          231 LPF-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       231 lp~-~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +.. ..+.||+|++.-    ...+..+++.+.+.||+||+++++.
T Consensus       124 ~~~~~~~~fD~I~lDP----~~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          124 LMAERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhccCCCCEEEeCC----CCCHHHHHHHHHHhcCCCCEEEEEe
Confidence            421 135799999642    1234678999999999999877764

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.98  E-value=1.3e-09  Score=95.74  Aligned_cols=86  Identities=16%  Similarity=0.193  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ....+.+.+.+...++ +|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++..      .++.++++|+.++
T Consensus        33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~--~V~avEid~~~~~~l~~~~~~------~~v~vi~~D~l~~  103 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA--EVTAIEKDLRLRPVLEETLSG------LPVRLVFQDALLY  103 (271)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTTT------SSEEEEESCGGGS
T ss_pred             HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCC------CCEEEEECChhhC
Confidence            4556677777777778 999999999999999999875  999999999999999997642      5799999999888


Q ss_pred             CCCCC-ccceEEecch
Q 021975          232 PFASG-FVDAVHAGAA  246 (304)
Q Consensus       232 p~~~~-~fD~V~~~~v  246 (304)
                      ++++. .+|.|+++.-
T Consensus       104 ~~~~~~~~~~iv~NlP  119 (271)
T 3fut_A          104 PWEEVPQGSLLVANLP  119 (271)
T ss_dssp             CGGGSCTTEEEEEEEC
T ss_pred             ChhhccCccEEEecCc
Confidence            77543 6888888654

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.97  E-value=1.8e-09  Score=99.44  Aligned_cols=104  Identities=14%  Similarity=0.138  Sum_probs=83.0

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCccCCCC-eEEEEccCCCCC--CCCCccce
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSN-LALVRADVCRLP--FASGFVDA  240 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~-i~~~~~d~~~lp--~~~~~fD~  240 (304)
                      .++.+|||++||+|.++..++....+ .+|+++|+++.+++.++++++.+++  ..+ +.++.+|+.++.  ...+.||+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl--~~~~v~v~~~Da~~~l~~~~~~~fD~  128 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI--PEDRYEIHGMEANFFLRKEWGFGFDY  128 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC--CGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCceEEEEeCCHHHHHHHhhCCCCcE
Confidence            35779999999999999999986322 5899999999999999999999883  344 999999985531  11457999


Q ss_pred             EEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      |++.-    ...+..+++.+.+.|++||+|+++.
T Consensus       129 V~lDP----~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          129 VDLDP----FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECC----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            99864    1234578999999999999777765

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.97  E-value=8.2e-10  Score=98.38  Aligned_cols=86  Identities=16%  Similarity=0.276  Sum_probs=70.9

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--C
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F  233 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~  233 (304)
                      +.+.+.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|+++++..+    .++.++++|+.+++  +
T Consensus        16 ~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g----~~v~~v~~d~~~l~~~l   91 (301)
T 1m6y_A           16 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS----DRVSLFKVSYREADFLL   91 (301)
T ss_dssp             HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT----TTEEEEECCGGGHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEECCHHHHHHHH
Confidence            34555666667889999999999999999998656799999999999999999987764    68999999998765  2


Q ss_pred             C---CCccceEEecc
Q 021975          234 A---SGFVDAVHAGA  245 (304)
Q Consensus       234 ~---~~~fD~V~~~~  245 (304)
                      .   ..+||.|++..
T Consensus        92 ~~~g~~~~D~Vl~D~  106 (301)
T 1m6y_A           92 KTLGIEKVDGILMDL  106 (301)
T ss_dssp             HHTTCSCEEEEEEEC
T ss_pred             HhcCCCCCCEEEEcC
Confidence            1   15799999854

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.95  E-value=1.8e-08  Score=84.23  Aligned_cols=112  Identities=9%  Similarity=0.070  Sum_probs=82.2

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccC--CCCeEEEEccCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL--TSNLALVRADVCRL  231 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~--~~~i~~~~~d~~~l  231 (304)
                      ..+++...+.  +..+|||+||  |+.+..+++.. +++|+.+|.+++..+.|+++++..+  .  ..++.++.+|+...
T Consensus        20 ~~~~L~~~l~--~a~~VLEiGt--GySTl~lA~~~-~g~VvtvE~d~~~~~~ar~~l~~~g--~~~~~~I~~~~gda~~~   92 (202)
T 3cvo_A           20 EAEALRMAYE--EAEVILEYGS--GGSTVVAAELP-GKHVTSVESDRAWARMMKAWLAANP--PAEGTEVNIVWTDIGPT   92 (202)
T ss_dssp             HHHHHHHHHH--HCSEEEEESC--SHHHHHHHTST-TCEEEEEESCHHHHHHHHHHHHHSC--CCTTCEEEEEECCCSSB
T ss_pred             HHHHHHHHhh--CCCEEEEECc--hHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCCCceEEEEeCchhh
Confidence            3444544333  3679999998  46777777642 5699999999999999999999887  3  56899999997542


Q ss_pred             ---------------C--------C-CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          232 ---------------P--------F-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       232 ---------------p--------~-~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                                     +        . ..++||+|+...-     .....+..+.+.|+|||++++-.+..
T Consensus        93 ~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~DNv~~  157 (202)
T 3cvo_A           93 GDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFDDYSQ  157 (202)
T ss_dssp             CGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEETTGGG
T ss_pred             hcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEeCCcC
Confidence                           1        1 2378999999763     22356677889999999996655333

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.93  E-value=1.1e-09  Score=95.42  Aligned_cols=114  Identities=13%  Similarity=0.059  Sum_probs=80.3

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCH-------HHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE-------NMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~-------~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      +...+...++.+|||+|||+|.++..+++.+.  +|+|+|+++       .+++.|+++.+.++  ...++.++++|+.+
T Consensus        75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g~--~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~--~~~ri~~~~~d~~~  150 (258)
T 2r6z_A           75 IAKAVNHTAHPTVWDATAGLGRDSFVLASLGL--TVTAFEQHPAVACLLSDGIRRALLNPETQD--TAARINLHFGNAAE  150 (258)
T ss_dssp             HHHHTTGGGCCCEEETTCTTCHHHHHHHHTTC--CEEEEECCHHHHHHHHHHHHHHHHSHHHHH--HHTTEEEEESCHHH
T ss_pred             HHHHhCcCCcCeEEEeeCccCHHHHHHHHhCC--EEEEEECChhhhHHHHHHHHHHHhHHHhhC--CccCeEEEECCHHH
Confidence            33334444568999999999999999999865  999999999       99999988776655  23459999999876


Q ss_pred             C-C-CCC--CccceEEecchhccCC--------------------CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          231 L-P-FAS--GFVDAVHAGAALHCWP--------------------SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       231 l-p-~~~--~~fD~V~~~~vl~h~~--------------------d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      + + +++  ++||+|++.-.+.|..                    +...+++++.++.+.  .+++-.+.+
T Consensus       151 ~l~~~~~~~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~--~vvvk~p~~  219 (258)
T 2r6z_A          151 QMPALVKTQGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK--RVVVKRPRL  219 (258)
T ss_dssp             HHHHHHHHHCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS--EEEEEEETT
T ss_pred             HHHhhhccCCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc--EEEEEcCCC
Confidence            4 2 333  6899999976555422                    223455566666543  566655544

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.90  E-value=2.2e-08  Score=96.03  Aligned_cols=148  Identities=16%  Similarity=0.037  Sum_probs=110.4

Q ss_pred             chhhHHHHHhHHHhhh-----cCCCCCcHHHHHHHHHhhc----ccCCCeEEEEcCCccHHHHHHHHhC---CCCeEEEE
Q 021975          129 PFVSFLYERGWRQNFN-----RSGFPGPDEEFKMAQEYFK----SAQGGLLVDVSCGSGLFSRKFAKSG---TYSGVVAL  196 (304)
Q Consensus       129 ~~~s~~~~~~w~~~~~-----~~~~~~~~~~~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~gi  196 (304)
                      +.+...|+....+...     .+.|++|..+.+++.+.+.    +.++.+|||.+||+|.++..+.+..   ...+++|+
T Consensus       175 D~lG~~YE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~  254 (542)
T 3lkd_A          175 DMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQ  254 (542)
T ss_dssp             THHHHHHHHHHHHHHCC---CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHhcccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEE
Confidence            4556666665544322     2457889999999988887    4467899999999999988887762   24589999


Q ss_pred             eCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--C-CCCCccceEEecchhcc-------------------CC---
Q 021975          197 DFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--P-FASGFVDAVHAGAALHC-------------------WP---  251 (304)
Q Consensus       197 D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p-~~~~~fD~V~~~~vl~h-------------------~~---  251 (304)
                      |+++.+.+.|+.++..++. ...++.+.++|....  | .....||+|+++--+..                   ++   
T Consensus       255 Eid~~~~~lA~~Nl~l~gi-~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s  333 (542)
T 3lkd_A          255 ELNTSTYNLARMNMILHGV-PIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKS  333 (542)
T ss_dssp             ESCHHHHHHHHHHHHHTTC-CGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTT
T ss_pred             ECcHHHHHHHHHHHHHcCC-CcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCc
Confidence            9999999999999887772 114688999998765  3 45678999998622110                   11   


Q ss_pred             C-HHHHHHHHHHhcc-cCcEEEEEEeCC
Q 021975          252 S-PSNAVAEISRILR-SGGVFVGTTFLR  277 (304)
Q Consensus       252 d-~~~~l~~~~r~Lk-pgG~lvi~~~~~  277 (304)
                      + ...++..+.+.|| +||++.++.+..
T Consensus       334 ~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          334 KADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             CCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             hhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            0 1248999999999 999999988765

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.90  E-value=3.4e-09  Score=101.82  Aligned_cols=146  Identities=14%  Similarity=0.037  Sum_probs=105.9

Q ss_pred             chhhHHHHHhHHHhh-----hcCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC--------------
Q 021975          129 PFVSFLYERGWRQNF-----NRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT--------------  189 (304)
Q Consensus       129 ~~~s~~~~~~w~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--------------  189 (304)
                      ..+...|+....+..     ..+.|++|..+.+++.+.+.+.++ +|||.+||+|.++..+.+...              
T Consensus       203 D~lG~~yE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~  281 (544)
T 3khk_A          203 DILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQK  281 (544)
T ss_dssp             CSHHHHHHHHHHHHHHTTTCCSTTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHG
T ss_pred             hHHHHHHHHHHHHHHHhhCccCCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHh
Confidence            455556665544322     124578999999999998877554 999999999999877754210              


Q ss_pred             -CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CCCCccceEEecchhcc------------------
Q 021975          190 -YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAGAALHC------------------  249 (304)
Q Consensus       190 -~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h------------------  249 (304)
                       ...++|+|+++.+++.|+.++..++  ...++.+.++|....+ +....||+|+++--+..                  
T Consensus       282 ~~~~i~G~Eid~~~~~lA~~Nl~l~g--i~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~  359 (544)
T 3khk_A          282 KQISVYGQESNPTTWKLAAMNMVIRG--IDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINT  359 (544)
T ss_dssp             GGEEEEECCCCHHHHHHHHHHHHHTT--CCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECC
T ss_pred             hhceEEEEeCCHHHHHHHHHHHHHhC--CCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCc
Confidence             3489999999999999999998877  2334445788875544 45678999999633221                  


Q ss_pred             -------CC---C-HHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          250 -------WP---S-PSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       250 -------~~---d-~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                             ++   + ...++..+.+.|||||++.++.+..
T Consensus       360 ~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g  398 (544)
T 3khk_A          360 NGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG  398 (544)
T ss_dssp             C--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred             ccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence                   11   0 1258999999999999999988754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.89  E-value=8.2e-09  Score=102.17  Aligned_cols=127  Identities=15%  Similarity=0.081  Sum_probs=92.1

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC----------------------------------------
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG----------------------------------------  188 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~----------------------------------------  188 (304)
                      +..+.+...+.......++..|||.+||+|.++..++..+                                        
T Consensus       173 pl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~  252 (703)
T 3v97_A          173 PIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL  252 (703)
T ss_dssp             SSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence            4445666667766666677899999999999998877642                                        


Q ss_pred             --CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC--CCCCCccceEEecchhc-cCC---CHHHH---H
Q 021975          189 --TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAGAALH-CWP---SPSNA---V  257 (304)
Q Consensus       189 --~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~~~~vl~-h~~---d~~~~---l  257 (304)
                        +..+++|+|+++.+++.|+.+++.++  ....+.+.++|+.++  |...++||+|+++--.. .+.   +...+   +
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~ag--v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l  330 (703)
T 3v97_A          253 AEYSSHFYGSDSDARVIQRARTNARLAG--IGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLL  330 (703)
T ss_dssp             HHCCCCEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHH
T ss_pred             ccCCccEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHH
Confidence              12489999999999999999999988  455699999999876  33344899999973321 111   22333   4


Q ss_pred             HHHHHhcccCcEEEEEEeCC
Q 021975          258 AEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       258 ~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .++.+.+.|||.+++.+...
T Consensus       331 ~~~lk~~~~g~~~~ilt~~~  350 (703)
T 3v97_A          331 GRIMKNQFGGWNLSLFSASP  350 (703)
T ss_dssp             HHHHHHHCTTCEEEEEESCH
T ss_pred             HHHHHhhCCCCeEEEEeCCH
Confidence            44455556899999988654

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.85  E-value=6.9e-09  Score=100.63  Aligned_cols=100  Identities=13%  Similarity=0.123  Sum_probs=74.8

Q ss_pred             CCeEEEEcCCccHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEE
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSG----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~----~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (304)
                      ...|||+|||+|-+.....+.+    ...+|+++|-++ ++..+++..+.++  ...+|+++.+|++++..+ +++|+|+
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~--~~dkVtVI~gd~eev~LP-EKVDIIV  433 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEE--WGSQVTVVSSDMREWVAP-EKADIIV  433 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHT--TGGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhcc--CCCeEEEEeCcceeccCC-cccCEEE
Confidence            4579999999998854444332    223789999997 6677888888888  578999999999998776 5899999


Q ss_pred             ecc---hhccCCCHHHHHHHHHHhcccCcEEE
Q 021975          243 AGA---ALHCWPSPSNAVAEISRILRSGGVFV  271 (304)
Q Consensus       243 ~~~---vl~h~~d~~~~l~~~~r~LkpgG~lv  271 (304)
                      +-.   .+-+-.-+ +.+....|.|||||+++
T Consensus       434 SEwMG~fLl~E~ml-evL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          434 SELLGSFADNELSP-ECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CCCCBTTBGGGCHH-HHHHHHGGGEEEEEEEE
T ss_pred             EEcCcccccccCCH-HHHHHHHHhcCCCcEEc
Confidence            832   12111233 67888899999999864

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.82  E-value=8.3e-09  Score=90.94  Aligned_cols=77  Identities=14%  Similarity=0.209  Sum_probs=63.3

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (304)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+..  .+|+|+|+++.+++.++++.   .    .++.++++|+.
T Consensus        28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~----~~v~~i~~D~~  100 (279)
T 3uzu_A           28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---G----ELLELHAGDAL  100 (279)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---G----GGEEEEESCGG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---C----CCcEEEECChh
Confidence            345566777777777889999999999999999998651  23999999999999999873   2    57999999999


Q ss_pred             CCCCCC
Q 021975          230 RLPFAS  235 (304)
Q Consensus       230 ~lp~~~  235 (304)
                      ++++++
T Consensus       101 ~~~~~~  106 (279)
T 3uzu_A          101 TFDFGS  106 (279)
T ss_dssp             GCCGGG
T ss_pred             cCChhH
Confidence            887653

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.82  E-value=2.6e-08  Score=86.30  Aligned_cols=76  Identities=17%  Similarity=0.388  Sum_probs=63.3

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+++.+++.++++ .      ..++.++++|+..+
T Consensus        17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~~v~avEid~~~~~~~~~~-~------~~~v~~i~~D~~~~   88 (249)
T 3ftd_A           17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLKSI-G------DERLEVINEDASKF   88 (249)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSC-CSEEEEECCCHHHHHHHTTS-C------CTTEEEECSCTTTC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcC-CCeEEEEECCHHHHHHHHhc-c------CCCeEEEEcchhhC
Confidence            3455667777777778899999999999999999985 34999999999999999875 1      25799999999998


Q ss_pred             CCCC
Q 021975          232 PFAS  235 (304)
Q Consensus       232 p~~~  235 (304)
                      ++++
T Consensus        89 ~~~~   92 (249)
T 3ftd_A           89 PFCS   92 (249)
T ss_dssp             CGGG
T ss_pred             ChhH
Confidence            8764

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.80  E-value=2.1e-08  Score=86.93  Aligned_cols=118  Identities=14%  Similarity=0.158  Sum_probs=77.8

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      +.++... ....++.+|||+|||+|.|+..+++..+...+.|+|+..++...... ...    ...++..+..++....+
T Consensus        63 L~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-~~~----~g~~ii~~~~~~dv~~l  136 (277)
T 3evf_A           63 LRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-VQS----LGWNIITFKDKTDIHRL  136 (277)
T ss_dssp             HHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-CCB----TTGGGEEEECSCCTTTS
T ss_pred             HHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-cCc----CCCCeEEEeccceehhc
Confidence            3444444 34456779999999999999988876434578888887432100000 000    01145666777665667


Q ss_pred             CCCccceEEecchhccCCCHH-------HHHHHHHHhcccC-cEEEEEEeCCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPS-------NAVAEISRILRSG-GVFVGTTFLRY  278 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~-------~~l~~~~r~Lkpg-G~lvi~~~~~~  278 (304)
                      ..+.||+|++..+.+ .....       .+|+.+.++|||| |.|++-.+..+
T Consensus       137 ~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~py  188 (277)
T 3evf_A          137 EPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPY  188 (277)
T ss_dssp             CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTT
T ss_pred             CCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCC
Confidence            788999999977555 33221       3468889999999 99999887743

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.73  E-value=1.2e-07  Score=83.67  Aligned_cols=110  Identities=15%  Similarity=0.249  Sum_probs=85.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CccCCCCeEEEEccCCCC-CCCCCccceE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PFASGFVDAV  241 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p~~~~~fD~V  241 (304)
                      ...++||-||.|.|..++.+.+..+..+++.+|+++.+++.+++.+...  +....++++++.+|.... .-..++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            3467999999999999999999866679999999999999999987431  111357899999999764 3446789999


Q ss_pred             Eecchh-----ccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          242 HAGAAL-----HCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       242 ~~~~vl-----~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +....=     .++ --..+++.+++.|+|||+++...-
T Consensus       162 i~D~~dp~~~~~~L-~t~eFy~~~~~~L~p~Gv~v~q~~  199 (294)
T 3o4f_A          162 ISDCTDPIGPGESL-FTSAFYEGCKRCLNPGGIFVAQNG  199 (294)
T ss_dssp             EESCCCCCCTTCCS-SCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEeCCCcCCCchhh-cCHHHHHHHHHHhCCCCEEEEecC
Confidence            985321     111 113689999999999999998653

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.70  E-value=9.3e-09  Score=89.31  Aligned_cols=86  Identities=8%  Similarity=0.094  Sum_probs=64.0

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      ...+.+.+.+...++.+|||||||+|.++. +.+ +...+|+|+|+++.+++.++++++..     .++.++++|+..++
T Consensus         8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~-----~~v~~i~~D~~~~~   80 (252)
T 1qyr_A            8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG-----PKLTIYQQDAMTFN   80 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG-----GGEEEECSCGGGCC
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC-----CceEEEECchhhCC
Confidence            345566666666678899999999999999 654 54223999999999999999865431     47999999998877


Q ss_pred             CCCC-----ccceEEecc
Q 021975          233 FASG-----FVDAVHAGA  245 (304)
Q Consensus       233 ~~~~-----~fD~V~~~~  245 (304)
                      +++.     ..|.|+++.
T Consensus        81 ~~~~~~~~~~~~~vvsNl   98 (252)
T 1qyr_A           81 FGELAEKMGQPLRVFGNL   98 (252)
T ss_dssp             HHHHHHHHTSCEEEEEEC
T ss_pred             HHHhhcccCCceEEEECC
Confidence            5431     235666653

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.69  E-value=1.1e-08  Score=94.41  Aligned_cols=74  Identities=12%  Similarity=0.144  Sum_probs=63.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CccCCCCeEEEEccCCCC-CC-CCCccceE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PF-ASGFVDAV  241 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p~-~~~~fD~V  241 (304)
                      ++.+|||+|||+|..+..+++.+.  +|+|+|+++.+++.|+++++..  +  . .++.++++|+.+. +. ++++||+|
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~--~V~~VD~s~~~l~~Ar~N~~~~~~g--l-~~i~~i~~Da~~~L~~~~~~~fDvV  167 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKAS--QGIYIERNDETAVAARHNIPLLLNE--G-KDVNILTGDFKEYLPLIKTFHPDYI  167 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHSCT--T-CEEEEEESCGGGSHHHHHHHCCSEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHhHHHhccC--C-CcEEEEECcHHHhhhhccCCCceEE
Confidence            378999999999999999998875  9999999999999999999876  5  2 6899999999774 32 23589999


Q ss_pred             Eec
Q 021975          242 HAG  244 (304)
Q Consensus       242 ~~~  244 (304)
                      ++.
T Consensus       168 ~lD  170 (410)
T 3ll7_A          168 YVD  170 (410)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            994

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.65  E-value=9e-08  Score=87.48  Aligned_cols=113  Identities=17%  Similarity=0.157  Sum_probs=77.7

Q ss_pred             CCeEEEEcCCccHHHHHHH--------Hh-------CCCCeEEEEeCCHHHHHHHHHHHHhcCc----------c--CCC
Q 021975          167 GGLLVDVSCGSGLFSRKFA--------KS-------GTYSGVVALDFSENMLRQCYDFIKQDNT----------I--LTS  219 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~--------~~-------~~~~~v~giD~s~~~~~~a~~~~~~~~~----------~--~~~  219 (304)
                      ..+|+|+|||+|.++..+.        +.       .+..+|+.-|+-.+.....-+.+.....          .  ..-
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            4689999999999887762        22       1567888989766554443333332110          0  001


Q ss_pred             CeEEEEccCCCCCCCCCccceEEecchhccCCC--------------------------------------HHHHHHHHH
Q 021975          220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPS--------------------------------------PSNAVAEIS  261 (304)
Q Consensus       220 ~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d--------------------------------------~~~~l~~~~  261 (304)
                      -+.-+.+.+..-.|++++||+|+++.+||++.+                                      ...+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            123344555555688999999999999999873                                      334688889


Q ss_pred             HhcccCcEEEEEEeCCCC
Q 021975          262 RILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       262 r~LkpgG~lvi~~~~~~~  279 (304)
                      +.|+|||++++....+..
T Consensus       213 ~eL~pGG~mvl~~~gr~~  230 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRTS  230 (374)
T ss_dssp             HHEEEEEEEEEEEEECCC
T ss_pred             HHhCCCCEEEEEEecCCC
Confidence            999999999999998753

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.64  E-value=2.6e-08  Score=86.61  Aligned_cols=91  Identities=15%  Similarity=0.057  Sum_probs=65.6

Q ss_pred             HHHHhhcccCC--CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc--cC----CCCeEEEEccC
Q 021975          157 MAQEYFKSAQG--GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT--IL----TSNLALVRADV  228 (304)
Q Consensus       157 ~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~--~~----~~~i~~~~~d~  228 (304)
                      .+.+.+...++  .+|||+|||+|..+..++..+.  +|+++|.++.+++.++++++....  ..    ..+++++++|.
T Consensus        77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~--~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            34445544455  7999999999999999999875  899999999887777766543210  00    14699999998


Q ss_pred             CC-CCCCCCccceEEecchhcc
Q 021975          229 CR-LPFASGFVDAVHAGAALHC  249 (304)
Q Consensus       229 ~~-lp~~~~~fD~V~~~~vl~h  249 (304)
                      .+ ++.....||+|++.-.+.+
T Consensus       155 ~~~L~~~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          155 LTALTDITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCC
T ss_pred             HHHHHhCcccCCEEEEcCCCCC
Confidence            65 2321247999999766655

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.63  E-value=4.8e-08  Score=94.87  Aligned_cols=101  Identities=10%  Similarity=0.104  Sum_probs=72.7

Q ss_pred             CCeEEEEcCCccHHHHHHHH----hC---------CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          167 GGLLVDVSCGSGLFSRKFAK----SG---------TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~----~~---------~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      ...|||||||+|-++....+    .+         ...+|+++|.++.++...+.+.. ++  ....|+++.+|++++.+
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng--~~d~VtVI~gd~eev~l  486 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT--WKRRVTIIESDMRSLPG  486 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT--TTTCSEEEESCGGGHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC--CCCeEEEEeCchhhccc
Confidence            45899999999999643222    12         23499999999987766666554 55  45789999999998866


Q ss_pred             C-----CCccceEEecchhccCC---CHHHHHHHHHHhcccCcEEE
Q 021975          234 A-----SGFVDAVHAGAALHCWP---SPSNAVAEISRILRSGGVFV  271 (304)
Q Consensus       234 ~-----~~~fD~V~~~~vl~h~~---d~~~~l~~~~r~LkpgG~lv  271 (304)
                      +     .+.+|+|++-.. ..+.   --.+.|..+.+.|||||+++
T Consensus       487 p~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          487 IAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence            3     478999998432 2221   12357777889999999765

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.60  E-value=3e-07  Score=90.60  Aligned_cols=133  Identities=15%  Similarity=0.112  Sum_probs=91.0

Q ss_pred             CCCCCcHHHHHHHHHh----hcc--cCCCeEEEEcCCccHHHHHHHHhCC---CCeEEEEeCCHHHHHHH--HHHHHhcC
Q 021975          146 SGFPGPDEEFKMAQEY----FKS--AQGGLLVDVSCGSGLFSRKFAKSGT---YSGVVALDFSENMLRQC--YDFIKQDN  214 (304)
Q Consensus       146 ~~~~~~~~~~~~l~~~----l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~~~v~giD~s~~~~~~a--~~~~~~~~  214 (304)
                      +.++++..+.+.+...    +..  .++.+|||.|||+|.++..+++...   ..+++|+|+++.+++.|  +.++..+.
T Consensus       295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~  374 (878)
T 3s1s_A          295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ  374 (878)
T ss_dssp             BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred             ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence            4578888888887776    222  2477999999999999999988753   35799999999999999  54443311


Q ss_pred             cc-CCCCeEEEEccCCCC-CCCCCccceEEecchhcc-CC---------------------------C-HHHHHHHHHHh
Q 021975          215 TI-LTSNLALVRADVCRL-PFASGFVDAVHAGAALHC-WP---------------------------S-PSNAVAEISRI  263 (304)
Q Consensus       215 ~~-~~~~i~~~~~d~~~l-p~~~~~fD~V~~~~vl~h-~~---------------------------d-~~~~l~~~~r~  263 (304)
                      .. ......+...|+... +.....||+|+++--... ..                           + ...++..+.+.
T Consensus       375 LlhGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~l  454 (878)
T 3s1s_A          375 LVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTEL  454 (878)
T ss_dssp             TCBTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHH
T ss_pred             hhcCCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHh
Confidence            10 012234555555442 234568999999643311 10                           1 22468889999


Q ss_pred             cccCcEEEEEEeCCC
Q 021975          264 LRSGGVFVGTTFLRY  278 (304)
Q Consensus       264 LkpgG~lvi~~~~~~  278 (304)
                      ||+||++.+..+...
T Consensus       455 LKpGGrLAfIlP~s~  469 (878)
T 3s1s_A          455 VQDGTVISAIMPKQY  469 (878)
T ss_dssp             SCTTCEEEEEEETHH
T ss_pred             cCCCcEEEEEEChHH
Confidence            999999999998763

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.59  E-value=8.1e-08  Score=87.92  Aligned_cols=109  Identities=16%  Similarity=0.074  Sum_probs=75.2

Q ss_pred             CCeEEEEcCCccHHHHHHHHh-----------------CCCCeEEEEeCC-----------HHHHHHHHHHHHhcCccCC
Q 021975          167 GGLLVDVSCGSGLFSRKFAKS-----------------GTYSGVVALDFS-----------ENMLRQCYDFIKQDNTILT  218 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~-----------------~~~~~v~giD~s-----------~~~~~~a~~~~~~~~~~~~  218 (304)
                      ..+|+|+||++|.++..+...                 .|..+|+.-|+-           +.+.+.+++.   .+  ..
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g--~~  127 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NG--RK  127 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TC--CC
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---cc--CC
Confidence            468999999999988777654                 245688889976           3333332221   11  11


Q ss_pred             CCeEEEEcc---CCCCCCCCCccceEEecchhccCCCHHH---------------------------------------H
Q 021975          219 SNLALVRAD---VCRLPFASGFVDAVHAGAALHCWPSPSN---------------------------------------A  256 (304)
Q Consensus       219 ~~i~~~~~d---~~~lp~~~~~fD~V~~~~vl~h~~d~~~---------------------------------------~  256 (304)
                      .+..|+.+.   +..-.|++++||+|+++.+||++.+...                                       +
T Consensus       128 ~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~F  207 (384)
T 2efj_A          128 IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTF  207 (384)
T ss_dssp             TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            233455544   3445688999999999999999865421                                       2


Q ss_pred             HHHHHHhcccCcEEEEEEeCCCCC
Q 021975          257 VAEISRILRSGGVFVGTTFLRYTS  280 (304)
Q Consensus       257 l~~~~r~LkpgG~lvi~~~~~~~~  280 (304)
                      |+..++.|+|||++++....+...
T Consensus       208 L~~Ra~eL~pGG~mvl~~~gr~~~  231 (384)
T 2efj_A          208 LRIHSEELISRGRMLLTFICKEDE  231 (384)
T ss_dssp             HHHHHHHEEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHhccCCeEEEEEecCCCc
Confidence            556689999999999999987543

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.55  E-value=2.2e-08  Score=86.93  Aligned_cols=119  Identities=18%  Similarity=0.123  Sum_probs=77.0

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      ++.++..++ ...++.+|||+|||+|.|+..++...+...++|+|+...+...+.. .+.    ...++.....+.....
T Consensus        78 KL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~~~----~g~~ii~~~~~~dv~~  151 (282)
T 3gcz_A           78 KLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-RTT----LGWNLIRFKDKTDVFN  151 (282)
T ss_dssp             HHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB----TTGGGEEEECSCCGGG
T ss_pred             HHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-ccc----CCCceEEeeCCcchhh
Confidence            444555554 4456779999999999999998876445579999997643111110 000    0123344444333334


Q ss_pred             CCCCccceEEecchhccCCCHH-------HHHHHHHHhcccC--cEEEEEEeCCC
Q 021975          233 FASGFVDAVHAGAALHCWPSPS-------NAVAEISRILRSG--GVFVGTTFLRY  278 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~-------~~l~~~~r~Lkpg--G~lvi~~~~~~  278 (304)
                      +....+|+|++....+ .....       .+|+-+..+||||  |.|++-.+..+
T Consensus       152 l~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~py  205 (282)
T 3gcz_A          152 MEVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPY  205 (282)
T ss_dssp             SCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCC
T ss_pred             cCCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCC
Confidence            5578999999987655 43321       3567778899999  99999888743

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.53  E-value=2.5e-07  Score=84.13  Aligned_cols=130  Identities=12%  Similarity=0.046  Sum_probs=96.7

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc---CCCCeEEEEccCCCCC-C
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCRLP-F  233 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~~~~i~~~~~d~~~lp-~  233 (304)
                      ....+...++.+|||+++|.|.-+.+++..+....++++|+++.-++..+++++..+..   ...++.+...|...++ .
T Consensus       140 ~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~  219 (359)
T 4fzv_A          140 PVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL  219 (359)
T ss_dssp             HHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH
T ss_pred             HHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh
Confidence            34456777899999999999999999998876678999999999999999998876521   1247888888887653 3


Q ss_pred             CCCccceEEec----c----hhccCCC------H----------HHHHHHHHHhcccCcEEEEEEeCCCCCCcccccc
Q 021975          234 ASGFVDAVHAG----A----ALHCWPS------P----------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR  287 (304)
Q Consensus       234 ~~~~fD~V~~~----~----vl~h~~d------~----------~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~~~~  287 (304)
                      ..+.||.|++.    .    ++..-++      +          .++|+...+.|||||+|+-+|..-....+..+..
T Consensus       220 ~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~  297 (359)
T 4fzv_A          220 EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQ  297 (359)
T ss_dssp             STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHH
T ss_pred             ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHH
Confidence            45789999963    2    2221111      1          2578889999999999999998765555554443

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.47  E-value=1.8e-07  Score=81.33  Aligned_cols=107  Identities=17%  Similarity=0.094  Sum_probs=71.6

Q ss_pred             CCCeEEEEcCCccHHHHHHHHh-------CCC-----CeEEEEeCCH---HHHH-----------HHHHHHHhcC-----
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKS-------GTY-----SGVVALDFSE---NMLR-----------QCYDFIKQDN-----  214 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~-------~~~-----~~v~giD~s~---~~~~-----------~a~~~~~~~~-----  214 (304)
                      +..+|||||+|+|..+..+.+.       .+.     .+++++|..+   +.+.           .+++.++...     
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4568999999999988776543       453     4899999876   4433           5555554310     


Q ss_pred             -----cc-CCCCeEEEEccCCC-CCCCC----CccceEEecc-hhccCCC--HHHHHHHHHHhcccCcEEEE
Q 021975          215 -----TI-LTSNLALVRADVCR-LPFAS----GFVDAVHAGA-ALHCWPS--PSNAVAEISRILRSGGVFVG  272 (304)
Q Consensus       215 -----~~-~~~~i~~~~~d~~~-lp~~~----~~fD~V~~~~-vl~h~~d--~~~~l~~~~r~LkpgG~lvi  272 (304)
                           +. ...+++++.+|+.+ ++..+    ..||+|+... .-..-++  -..+++++.++|||||+|+.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                 00 12467899999866 44222    2799999853 2221222  24689999999999999884

>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1

Probab=98.45  E-value=7.1e-08  Score=65.28  Aligned_cols=47  Identities=15%  Similarity=0.142  Sum_probs=39.8

Q ss_pred             CcCCeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCeeeeecccC
Q 021975           56 LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (304)
Q Consensus        56 ~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (304)
                      -.+++++||+|+++|.....         .+.+.|+.|+..|++++|+++++.+..
T Consensus         6 ~LLeiL~CP~ck~~L~~~~~---------~g~LvC~~c~~~YPI~dGIPvmL~~Ea   52 (67)
T 2jny_A            6 QLLEVLACPKDKGPLRYLES---------EQLLVNERLNLAYRIDDGIPVLLIDEA   52 (67)
T ss_dssp             GGTCCCBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCSSCC
T ss_pred             HHHHHhCCCCCCCcCeEeCC---------CCEEEcCCCCccccCCCCEeeeChhHh
Confidence            35788999999999977542         278999999999999999999997743

>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}

Probab=98.42  E-value=9.5e-08  Score=64.96  Aligned_cols=46  Identities=17%  Similarity=0.195  Sum_probs=39.3

Q ss_pred             CcCCeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCeeeeeccc
Q 021975           56 LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (304)
Q Consensus        56 ~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~  110 (304)
                      ..+++++||+|+++|.....         .+.+.|+.|+..|++++|+++++.+.
T Consensus         4 ~LL~iL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~E   49 (68)
T 2jr6_A            4 KFLDILVCPVTKGRLEYHQD---------KQELWSRQAKLAYPIKDGIPYMLENE   49 (68)
T ss_dssp             SSSCCCBCSSSCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCTTT
T ss_pred             HHhhheECCCCCCcCeEeCC---------CCEEEcCCCCcEecCCCCeeeeChhh
Confidence            35788999999999977542         27899999999999999999999763

>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}

Probab=98.40  E-value=1e-07  Score=65.22  Aligned_cols=47  Identities=15%  Similarity=0.292  Sum_probs=39.9

Q ss_pred             CcCCeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCeeeeecccC
Q 021975           56 LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (304)
Q Consensus        56 ~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (304)
                      ..+++++||+|+++|.....         .+.+.|+.|+..|++++|+++++.+..
T Consensus         4 ~LL~iL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~Ea   50 (70)
T 2js4_A            4 RLLDILVCPVCKGRLEFQRA---------QAELVCNADRLAFPVRDGVPIMLEAEA   50 (70)
T ss_dssp             CCCCCCBCTTTCCBEEEETT---------TTEEEETTTTEEEEEETTEECCCGGGS
T ss_pred             HHhhheECCCCCCcCEEeCC---------CCEEEcCCCCceecCCCCeeeeChhhc
Confidence            35788999999999977542         378999999999999999999998743

>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1

Probab=98.39  E-value=9.2e-08  Score=65.04  Aligned_cols=46  Identities=17%  Similarity=0.380  Sum_probs=39.2

Q ss_pred             CcCCeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCeeeeeccc
Q 021975           56 LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (304)
Q Consensus        56 ~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~  110 (304)
                      ..+++++||+|+++|.....         .+.+.|+.|+..|++++|+++++.+.
T Consensus         4 ~LL~iL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~E   49 (68)
T 2hf1_A            4 KFLEILVCPLCKGPLVFDKS---------KDELICKGDRLAFPIKDGIPMMLESE   49 (68)
T ss_dssp             CCEEECBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCGGG
T ss_pred             HHhhheECCCCCCcCeEeCC---------CCEEEcCCCCcEecCCCCeeeeChhh
Confidence            35688999999999977542         37899999999999999999999764

>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1

Probab=98.39  E-value=1.1e-07  Score=64.85  Aligned_cols=46  Identities=20%  Similarity=0.368  Sum_probs=39.1

Q ss_pred             CcCCeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCeeeeeccc
Q 021975           56 LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (304)
Q Consensus        56 ~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~  110 (304)
                      ..+++++||+|+++|.....         .+.+.|+.|+..|++++|+++++.+.
T Consensus         4 ~LLeiL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~e   49 (69)
T 2pk7_A            4 KLLDILACPICKGPLKLSAD---------KTELISKGAGLAYPIRDGIPVMLESE   49 (69)
T ss_dssp             CGGGTCCCTTTCCCCEECTT---------SSEEEETTTTEEEEEETTEECCCGGG
T ss_pred             HHHhheeCCCCCCcCeEeCC---------CCEEEcCCCCcEecCcCCeeeeChhh
Confidence            35678999999999976442         37899999999999999999999764

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.38  E-value=4.2e-06  Score=80.13  Aligned_cols=146  Identities=17%  Similarity=0.159  Sum_probs=104.8

Q ss_pred             chhhHHHHHhHHHhhh----cCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh----CC---------CC
Q 021975          129 PFVSFLYERGWRQNFN----RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS----GT---------YS  191 (304)
Q Consensus       129 ~~~s~~~~~~w~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~---------~~  191 (304)
                      +.+...|+..-++.-.    .+.|++|..+.+++.+.+.+.++.+|+|.+||+|.++..+.+.    ..         ..
T Consensus       176 d~lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~  255 (530)
T 3ufb_A          176 HTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQES  255 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhh
Confidence            3455566665544221    2348899999999999999888889999999999998776543    11         24


Q ss_pred             eEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC----CCccceEEecchhcc---------CC------C
Q 021975          192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA----SGFVDAVHAGAALHC---------WP------S  252 (304)
Q Consensus       192 ~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~----~~~fD~V~~~~vl~h---------~~------d  252 (304)
                      .++|+|+++.+...|+-++-.++.   ....+..+|....|..    ...||+|+++--+.-         .+      +
T Consensus       256 ~i~G~E~~~~~~~la~mNl~lhg~---~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~  332 (530)
T 3ufb_A          256 SIFGGEAKSLPYLLVQMNLLLHGL---EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAE  332 (530)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHTC---SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCB
T ss_pred             hhhhhhccHHHHHHHHHHHHhcCC---ccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccch
Confidence            799999999999999998877762   3456777887655432    347999999644321         11      1


Q ss_pred             H-HHHHHHHHHhcc-------cCcEEEEEEeCC
Q 021975          253 P-SNAVAEISRILR-------SGGVFVGTTFLR  277 (304)
Q Consensus       253 ~-~~~l~~~~r~Lk-------pgG~lvi~~~~~  277 (304)
                      . ..++..+.+.||       +||++.++.+..
T Consensus       333 ~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g  365 (530)
T 3ufb_A          333 TAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNG  365 (530)
T ss_dssp             HHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHH
T ss_pred             hHHHHHHHHHHHhhhhhhccCCCceEEEEecch
Confidence            1 246788888887       799999988754

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.38  E-value=8.5e-07  Score=77.92  Aligned_cols=109  Identities=12%  Similarity=0.088  Sum_probs=81.5

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhC-----CCCeEEEEeCCHH--------------------------HHHHHHHHHHhc
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSEN--------------------------MLRQCYDFIKQD  213 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~giD~s~~--------------------------~~~~a~~~~~~~  213 (304)
                      ...+.|||+|+..|..+..++...     ++.+++++|..+.                          .++.++++++..
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            446799999999999888876542     3669999996421                          367788999888


Q ss_pred             CccCCCCeEEEEccCCC-CC-CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          214 NTILTSNLALVRADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       214 ~~~~~~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ++ ...++.++.+++.+ +| ++.++||+|+...-.  .......|+.+...|+|||++++-++.
T Consensus       185 gl-~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~~  246 (282)
T 2wk1_A          185 DL-LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDYM  246 (282)
T ss_dssp             TC-CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSCT
T ss_pred             CC-CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCCC
Confidence            72 13789999999854 33 445789999987632  112346799999999999999887763

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.37  E-value=3e-07  Score=83.51  Aligned_cols=111  Identities=14%  Similarity=0.131  Sum_probs=80.3

Q ss_pred             CCeEEEEcCCccHHHHHHHHh----------------CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEE---EEcc
Q 021975          167 GGLLVDVSCGSGLFSRKFAKS----------------GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL---VRAD  227 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~----------------~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~---~~~d  227 (304)
                      ..+|+|+||++|..+..+...                .|..+|+.-|+-.+....+-+.+....  ...+..|   +.+.
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~--~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN--DVDGVCFINGVPGS  129 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC--SCTTCEEEEEEESC
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc--ccCCCEEEEecchh
Confidence            467999999999876554332                345689999988877777766554311  0012233   3455


Q ss_pred             CCCCCCCCCccceEEecchhccCCCHH---------------------------------HHHHHHHHhcccCcEEEEEE
Q 021975          228 VCRLPFASGFVDAVHAGAALHCWPSPS---------------------------------NAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~---------------------------------~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +..-.|+++++|+|+++.+||++.+..                                 .+|+..++.|+|||++++..
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~  209 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            555678899999999999999976422                                 34888899999999999999


Q ss_pred             eCCCC
Q 021975          275 FLRYT  279 (304)
Q Consensus       275 ~~~~~  279 (304)
                      ..+..
T Consensus       210 ~gr~~  214 (359)
T 1m6e_X          210 LGRRS  214 (359)
T ss_dssp             EECSS
T ss_pred             ecCCC
Confidence            88753

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.35  E-value=2.8e-06  Score=76.97  Aligned_cols=87  Identities=18%  Similarity=0.226  Sum_probs=68.5

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .++.++||+||++|.++..+.+.+.  .|++||+.+ +.....         ..+++.++++|+.....+.+.||+|+|.
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~--~V~aVD~~~-l~~~l~---------~~~~V~~~~~d~~~~~~~~~~~D~vvsD  277 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNM--WVYSVDNGP-MAQSLM---------DTGQVTWLREDGFKFRPTRSNISWMVCD  277 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC--EEEEECSSC-CCHHHH---------TTTCEEEECSCTTTCCCCSSCEEEEEEC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCC--EEEEEEhhh-cChhhc---------cCCCeEEEeCccccccCCCCCcCEEEEc
Confidence            4689999999999999999999975  999999865 212111         2478999999998887777889999997


Q ss_pred             chhccCCCHHHHHHHHHHhcccC
Q 021975          245 AALHCWPSPSNAVAEISRILRSG  267 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~Lkpg  267 (304)
                      .+    .+|...++-+.+.|..|
T Consensus       278 m~----~~p~~~~~l~~~wl~~~  296 (375)
T 4auk_A          278 MV----EKPAKVAALMAQWLVNG  296 (375)
T ss_dssp             CS----SCHHHHHHHHHHHHHTT
T ss_pred             CC----CChHHhHHHHHHHHhcc
Confidence            65    45777777777776665

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.30  E-value=2.9e-06  Score=74.14  Aligned_cols=119  Identities=13%  Similarity=0.113  Sum_probs=73.9

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      ++.++... --..++.+|||+||++|.|+..+.+...-..|+|+|+...+...... ...    ...++.....+.....
T Consensus        69 KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~----~~~~iv~~~~~~di~~  142 (300)
T 3eld_A           69 KIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQT----LGWNIVKFKDKSNVFT  142 (300)
T ss_dssp             HHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB----TTGGGEEEECSCCTTT
T ss_pred             HHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccc----cCCceEEeecCceeee
Confidence            34444444 22346889999999999999999986444578999986532100000 000    0112333333333233


Q ss_pred             CCCCccceEEecchhccCCCH-------HHHHHHHHHhcccC-cEEEEEEeCCC
Q 021975          233 FASGFVDAVHAGAALHCWPSP-------SNAVAEISRILRSG-GVFVGTTFLRY  278 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~-------~~~l~~~~r~Lkpg-G~lvi~~~~~~  278 (304)
                      +..+.+|+|++...-+ ....       ..+|.-+..+|+|| |.|++-.+..+
T Consensus       143 l~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~y  195 (300)
T 3eld_A          143 MPTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPY  195 (300)
T ss_dssp             SCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTT
T ss_pred             cCCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccc
Confidence            4567899999976544 3332       13577778999999 99999888743

>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}

Probab=98.26  E-value=5.3e-07  Score=58.88  Aligned_cols=45  Identities=24%  Similarity=0.522  Sum_probs=38.9

Q ss_pred             CCcCCeeeccCCCccccccCCCCccccccccCceeeC--CCCccccCCCCeeeeeccc
Q 021975           55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCR--KCDKTYSSKDNYLDLTVIS  110 (304)
Q Consensus        55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~--~C~~~~~~~~g~~~~~~~~  110 (304)
                      ...+++++||.|+++|....           +.+.|+  .|+..|++++|+++++.+.
T Consensus         5 ~~lL~iL~CP~c~~~L~~~~-----------~~L~C~~~~c~~~YPI~dGIPvlL~~e   51 (56)
T 2kpi_A            5 AGLLEILACPACHAPLEERD-----------AELICTGQDCGLAYPVRDGIPVLLVDE   51 (56)
T ss_dssp             CSCTTSCCCSSSCSCEEEET-----------TEEEECSSSCCCEEEEETTEECCCTTT
T ss_pred             HHHHhheeCCCCCCcceecC-----------CEEEcCCcCCCcEEeeECCEeeeCHHH
Confidence            34678899999999987744           689999  9999999999999998764

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.23  E-value=2.7e-06  Score=74.19  Aligned_cols=79  Identities=20%  Similarity=0.308  Sum_probs=64.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---  232 (304)
                      +.+.+.+...+++.+||.+||.|..+..+++.  +.+|+|+|.++.+++.+++ ++.      .++.++++++.+++   
T Consensus        12 ~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~------~rv~lv~~~f~~l~~~L   82 (285)
T 1wg8_A           12 QEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL------PGLTVVQGNFRHLKRHL   82 (285)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC------TTEEEEESCGGGHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc------CCEEEEECCcchHHHHH
Confidence            34555666667889999999999999999998  3499999999999999998 642      47999999998764   


Q ss_pred             --CCCCccceEEe
Q 021975          233 --FASGFVDAVHA  243 (304)
Q Consensus       233 --~~~~~fD~V~~  243 (304)
                        ...++||.|++
T Consensus        83 ~~~g~~~vDgIL~   95 (285)
T 1wg8_A           83 AALGVERVDGILA   95 (285)
T ss_dssp             HHTTCSCEEEEEE
T ss_pred             HHcCCCCcCEEEe
Confidence              12257999997

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.14  E-value=4.5e-06  Score=75.89  Aligned_cols=108  Identities=12%  Similarity=0.148  Sum_probs=78.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-----ccCCCCeEEEEccCCCCC----CCCC
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-----TILTSNLALVRADVCRLP----FASG  236 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----~~~~~~i~~~~~d~~~lp----~~~~  236 (304)
                      ++++||-||.|.|..++.+.+... .+++.+|+++.+++.+++.+....     ....++++++.+|....-    -..+
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            467999999999999999998754 799999999999999999764311     002246889999875421    1246


Q ss_pred             ccceEEecchhcc-CCCH---------HHHHHHHHHhcccCcEEEEEE
Q 021975          237 FVDAVHAGAALHC-WPSP---------SNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       237 ~fD~V~~~~vl~h-~~d~---------~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      .||+|+....-.. ..+|         ..+++.+++.|+|||+++...
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~  331 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG  331 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            7999998532111 1122         357889999999999988754

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.13  E-value=1.9e-05  Score=61.87  Aligned_cols=87  Identities=16%  Similarity=0.156  Sum_probs=61.6

Q ss_pred             CCeEEEEcCCcc-HHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC--CccceEE
Q 021975          167 GGLLVDVSCGSG-LFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS--GFVDAVH  242 (304)
Q Consensus       167 ~~~vLDiGcG~G-~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~--~~fD~V~  242 (304)
                      +.+|||||||.| ..+..|++ .+.  +|+++|+++..+                  .+++.|+.+ |..+  +.||+|.
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~~g~--~V~atDInp~Av------------------~~v~dDiF~-P~~~~Y~~~DLIY   94 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKHSKV--DLVLTDIKPSHG------------------GIVRDDITS-PRMEIYRGAALIY   94 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHHSCC--EEEEECSSCSST------------------TEECCCSSS-CCHHHHTTEEEEE
T ss_pred             CCcEEEEccCCChHHHHHHHHhCCC--eEEEEECCcccc------------------ceEEccCCC-CcccccCCcCEEE
Confidence            579999999999 59999997 665  999999988532                  288899987 3222  3799998


Q ss_pred             ecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      +..-   -++....+.++++.+  |.-+++.......
T Consensus        95 sirP---P~El~~~i~~lA~~v--~adliI~pL~~E~  126 (153)
T 2k4m_A           95 SIRP---PAEIHSSLMRVADAV--GARLIIKPLTGED  126 (153)
T ss_dssp             EESC---CTTTHHHHHHHHHHH--TCEEEEECBTTBC
T ss_pred             EcCC---CHHHHHHHHHHHHHc--CCCEEEEcCCCCc
Confidence            7542   123445555555544  4578887776543

>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}

Probab=98.11  E-value=1.1e-06  Score=63.74  Aligned_cols=55  Identities=15%  Similarity=0.090  Sum_probs=42.9

Q ss_pred             CcCCeeeccCCCccccccCC------------------CCccccccccCceeeCCCCccccCCCCeeeeeccc
Q 021975           56 LEGDLFSCPICYEPLIRKGP------------------TGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (304)
Q Consensus        56 ~~~~~l~CP~C~~~l~~~~~------------------~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~  110 (304)
                      ..+++|+||.|+++|.....                  .+....++..+.+.|+.|+..|++++|+++++.+.
T Consensus         4 ~LLdILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGIPvmL~~e   76 (97)
T 2k5r_A            4 KLLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLPEE   76 (97)
T ss_dssp             TTCSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEECCGGG
T ss_pred             HHhhheECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCCcccChHH
Confidence            35789999999999876432                  11233455568899999999999999999999873

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.98  E-value=1.3e-05  Score=68.65  Aligned_cols=111  Identities=18%  Similarity=0.180  Sum_probs=67.2

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccC-CCCe---EEEEc-cCC
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-TSNL---ALVRA-DVC  229 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-~~~i---~~~~~-d~~  229 (304)
                      .++...+ -..++.+|||+||+.|.|+..+++.-.-..|.|.++.... .       ...... ..++   .+.++ |+.
T Consensus        63 ~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-------~~P~~~~~~Gv~~i~~~~G~Df~  133 (269)
T 2px2_A           63 RWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-------EEPMLMQSYGWNIVTMKSGVDVF  133 (269)
T ss_dssp             HHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-------CCCCCCCSTTGGGEEEECSCCGG
T ss_pred             HHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-------cCCCcccCCCceEEEeeccCCcc
Confidence            3444443 4456889999999999999999887211133444443220 0       000000 0233   44446 887


Q ss_pred             CCCCCCCccceEEecchhccCCCHH-------HHHHHHHHhcccCc-EEEEEEeCC
Q 021975          230 RLPFASGFVDAVHAGAALHCWPSPS-------NAVAEISRILRSGG-VFVGTTFLR  277 (304)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~-------~~l~~~~r~LkpgG-~lvi~~~~~  277 (304)
                      .++  ...+|+|+|...=. ..++.       .+|+-+.++|+||| .|++-.+..
T Consensus       134 ~~~--~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg  186 (269)
T 2px2_A          134 YKP--SEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP  186 (269)
T ss_dssp             GSC--CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             CCC--CCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence            753  55799999965432 33221       25666778999999 999988764

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.98  E-value=5.6e-05  Score=65.83  Aligned_cols=118  Identities=14%  Similarity=0.137  Sum_probs=78.3

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc-cCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLP  232 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp  232 (304)
                      +.++... ....++.+|||+||++|.|+...+.......|+|+|+-..-.+.= ...+..+   ..-+.+..+ |+..++
T Consensus        83 L~ei~~~-~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~---w~lV~~~~~~Dv~~l~  157 (321)
T 3lkz_A           83 LRWLVER-RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYG---WNIVTMKSGVDVFYRP  157 (321)
T ss_dssp             HHHHHHT-TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTT---GGGEEEECSCCTTSSC
T ss_pred             HHHHHHh-cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcC---CcceEEEeccCHhhCC
Confidence            3444444 334567799999999999999777764345899999965411000 0000111   133778887 877766


Q ss_pred             CCCCccceEEecchhccCCCHH-------HHHHHHHHhcccC-cEEEEEEeCCCC
Q 021975          233 FASGFVDAVHAGAALHCWPSPS-------NAVAEISRILRSG-GVFVGTTFLRYT  279 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~-------~~l~~~~r~Lkpg-G~lvi~~~~~~~  279 (304)
                      .  ..+|+|+|.-. +--+++.       .+|+-+.+.|++| |-|++-.+..|.
T Consensus       158 ~--~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~  209 (321)
T 3lkz_A          158 S--ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYM  209 (321)
T ss_dssp             C--CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTS
T ss_pred             C--CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCC
Confidence            3  66999999776 7777764       2566667889999 888887776654

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.94  E-value=3.1e-05  Score=68.55  Aligned_cols=61  Identities=15%  Similarity=0.166  Sum_probs=51.6

Q ss_pred             CcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 021975          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD  213 (304)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  213 (304)
                      .+.++.+.+..... .++..|||++||+|..+..+.+.+.  +++|+|+++.+++.|+++++..
T Consensus       220 ~p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~--~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          220 FPLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR--RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             SCHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence            44566666666555 4688999999999999999999876  9999999999999999998764

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.91  E-value=7.3e-05  Score=63.06  Aligned_cols=117  Identities=17%  Similarity=0.152  Sum_probs=76.5

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc-cCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLP  232 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp  232 (304)
                      +.++...+ ...++.+|||+||++|.++...+.......|+|+|+-..-.+.= ...+..   .-..+.|.++ |+..++
T Consensus        67 L~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~---gwn~v~fk~gvDv~~~~  141 (267)
T 3p8z_A           67 LQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTY---GWNIVKLMSGKDVFYLP  141 (267)
T ss_dssp             HHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCT---TTTSEEEECSCCGGGCC
T ss_pred             HHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhc---CcCceEEEeccceeecC
Confidence            34444444 44567899999999999999777764345899999965321000 000111   1256899998 876655


Q ss_pred             CCCCccceEEecchhccCCCHH-------HHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          233 FASGFVDAVHAGAALHCWPSPS-------NAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~-------~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                        ...+|.|+|.-.= .-+++.       .+|+-+.+.|++ |-+++-.+..+.
T Consensus       142 --~~~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~  191 (267)
T 3p8z_A          142 --PEKCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM  191 (267)
T ss_dssp             --CCCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred             --CccccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence              3679999996542 334443       255666788998 788887776654

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.57  E-value=6.3e-05  Score=67.09  Aligned_cols=83  Identities=19%  Similarity=0.271  Sum_probs=65.0

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (304)
                      +.+.+.+...+++.++|..||.|..+..+++. ++.++|+|+|.++.+++.++ ++  .    ..++.++++++.++.  
T Consensus        47 ~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~----~~Rv~lv~~nF~~l~~~  119 (347)
T 3tka_A           47 DEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D----DPRFSIIHGPFSALGEY  119 (347)
T ss_dssp             HHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C----CTTEEEEESCGGGHHHH
T ss_pred             HHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c----CCcEEEEeCCHHHHHHH
Confidence            34555666778899999999999999999987 67789999999999999884 33  1    368999999987753  


Q ss_pred             CC----CCccceEEecc
Q 021975          233 FA----SGFVDAVHAGA  245 (304)
Q Consensus       233 ~~----~~~fD~V~~~~  245 (304)
                      +.    .+++|.|++..
T Consensus       120 L~~~g~~~~vDgILfDL  136 (347)
T 3tka_A          120 VAERDLIGKIDGILLDL  136 (347)
T ss_dssp             HHHTTCTTCEEEEEEEC
T ss_pred             HHhcCCCCcccEEEECC
Confidence            11    13699998843

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.44  E-value=0.00045  Score=59.80  Aligned_cols=63  Identities=19%  Similarity=0.227  Sum_probs=51.2

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN  214 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~  214 (304)
                      +.+.++.+.+..... .++..|||..||+|..+....+.+.  +++|+|+++..++.++++++..+
T Consensus       196 ~~p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr--~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          196 PKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcc
Confidence            445666666665554 4688999999999999999998876  99999999999999999987643

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.42  E-value=3.1e-05  Score=86.14  Aligned_cols=104  Identities=20%  Similarity=0.202  Sum_probs=54.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-CCCCCccc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVD  239 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD  239 (304)
                      +..+|||||.|+|..+..+.+...     ..+++-.|+|+...+.++++++...      +..-.-|..+. ++..++||
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d------i~~~~~d~~~~~~~~~~~yd 1313 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH------VTQGQWDPANPAPGSLGKAD 1313 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT------EEEECCCSSCCCC-----CC
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc------cccccccccccccCCCCcee
Confidence            456899999999987655544321     2478999999988877777665422      22221233332 33456899


Q ss_pred             eEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +|++..+||-.++....+++++++|||||++++...
T Consensus      1314 lvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1314 LLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             EEEEECC--------------------CCEEEEEEC
T ss_pred             EEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            999999999888999999999999999999988753

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.35  E-value=0.0028  Score=56.93  Aligned_cols=120  Identities=13%  Similarity=0.157  Sum_probs=86.0

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc------------------CC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------------------LT  218 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~------------------~~  218 (304)
                      .+.+++...+...|+.+|||.......+...+++..++-+|. |+.++.-++.+...+..                  ..
T Consensus        88 ~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~  166 (334)
T 1rjd_A           88 AILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQ  166 (334)
T ss_dssp             HHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEEC
T ss_pred             HHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCC
Confidence            344445444567899999999999988887655668888887 88888888877664200                  12


Q ss_pred             CCeEEEEccCCCCCC---------CCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          219 SNLALVRADVCRLPF---------ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       219 ~~i~~~~~d~~~lp~---------~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      .+..++.+|+.+...         ......++++-.++.+++..  ..+++.+.... |+|.+++.++...
T Consensus       167 ~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~  236 (334)
T 1rjd_A          167 GRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGG  236 (334)
T ss_dssp             SSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred             CceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence            679999999987421         22456788888999998743  36778787776 7888877776553

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.34  E-value=0.00081  Score=60.79  Aligned_cols=75  Identities=12%  Similarity=0.089  Sum_probs=58.3

Q ss_pred             cHHHHHHHHHhhccc------CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEE
Q 021975          151 PDEEFKMAQEYFKSA------QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV  224 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~------~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~  224 (304)
                      .....+.+.+.+...      ++..|||||.|.|.++..|.+.....+|+++|+++..+...++.. .     ..++.++
T Consensus        37 d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-----~~~l~ii  110 (353)
T 1i4w_A           37 NPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-----GSPLQIL  110 (353)
T ss_dssp             CHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T-----TSSCEEE
T ss_pred             CHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c-----CCCEEEE
Confidence            345556666666543      357899999999999999998732348999999999999998865 2     2589999


Q ss_pred             EccCCCC
Q 021975          225 RADVCRL  231 (304)
Q Consensus       225 ~~d~~~l  231 (304)
                      .+|+.++
T Consensus       111 ~~D~l~~  117 (353)
T 1i4w_A          111 KRDPYDW  117 (353)
T ss_dssp             CSCTTCH
T ss_pred             ECCccch
Confidence            9999654

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.30  E-value=0.00088  Score=58.33  Aligned_cols=99  Identities=9%  Similarity=-0.016  Sum_probs=66.5

Q ss_pred             cccCCCeEEEEcC------CccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          163 KSAQGGLLVDVSC------GSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       163 ~~~~~~~vLDiGc------G~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      ..+.+.+|||+|+      ..|.+  .+++.++. +.++++|+.+-.              .... .++++|...... .
T Consensus       106 ~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~--------------sda~-~~IqGD~~~~~~-~  167 (344)
T 3r24_A          106 AVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV--------------SDAD-STLIGDCATVHT-A  167 (344)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB--------------CSSS-EEEESCGGGEEE-S
T ss_pred             eecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc--------------cCCC-eEEEcccccccc-C
Confidence            3456899999996      66763  44555664 599999997732              1122 559999765432 4


Q ss_pred             CccceEEecchh---ccC--CC-----H-HHHHHHHHHhcccCcEEEEEEeCCCC
Q 021975          236 GFVDAVHAGAAL---HCW--PS-----P-SNAVAEISRILRSGGVFVGTTFLRYT  279 (304)
Q Consensus       236 ~~fD~V~~~~vl---~h~--~d-----~-~~~l~~~~r~LkpgG~lvi~~~~~~~  279 (304)
                      +.||+|++...=   -+.  ..     . +.+++-+.+.|+|||.|++-.+....
T Consensus       168 ~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg  222 (344)
T 3r24_A          168 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW  222 (344)
T ss_dssp             SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred             CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence            789999995331   111  11     1 34566678899999999999887643

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=96.69  E-value=0.0012  Score=41.87  Aligned_cols=33  Identities=27%  Similarity=0.539  Sum_probs=24.6

Q ss_pred             CCeeeccCCCc-cccccCCCCccccccccCceeeCCCCccccC
Q 021975           58 GDLFSCPICYE-PLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (304)
Q Consensus        58 ~~~l~CP~C~~-~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~   99 (304)
                      ...+.||.|++ ++.....         .+.+.|..||..+..
T Consensus         3 ~~~~~CP~C~~~~l~~d~~---------~gelvC~~CG~v~~e   36 (50)
T 1pft_A            3 NKQKVCPACESAELIYDPE---------RGEIVCAKCGYVIEE   36 (50)
T ss_dssp             SSCCSCTTTSCCCEEEETT---------TTEEEESSSCCBCCC
T ss_pred             CccEeCcCCCCcceEEcCC---------CCeEECcccCCcccc
Confidence            34678999999 6655432         268999999998743

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.54  E-value=0.0017  Score=56.62  Aligned_cols=106  Identities=8%  Similarity=-0.053  Sum_probs=81.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CC---CCCCccceE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP---FASGFVDAV  241 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp---~~~~~fD~V  241 (304)
                      .+..+||+=+|+|.++..+.+.+  .+++.+|.++..++..+++++.     ..++.++..|... +.   -+...||+|
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~--d~~vfvE~~~~a~~~L~~Nl~~-----~~~~~V~~~D~~~~L~~l~~~~~~fdLV  163 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLPHF-----NKKVYVNHTDGVSKLNALLPPPEKRGLI  163 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSCCT-----TSCEEEECSCHHHHHHHHCSCTTSCEEE
T ss_pred             cCCCceeEeCCcHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHhCc-----CCcEEEEeCcHHHHHHHhcCCCCCccEE
Confidence            35678999999999999999855  4999999999999999988764     2579999999633 21   224579999


Q ss_pred             EecchhccCCCHHHHHHHHHH--hcccCcEEEEEEeCCC
Q 021975          242 HAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLRY  278 (304)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r--~LkpgG~lvi~~~~~~  278 (304)
                      ++.--.+.-.+...+++.+.+  .+.++|+++++-+.-.
T Consensus       164 fiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~  202 (283)
T 2oo3_A          164 FIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN  202 (283)
T ss_dssp             EECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred             EECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence            997665543455666666665  5678999999887653

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.52  E-value=0.053  Score=47.98  Aligned_cols=108  Identities=17%  Similarity=0.085  Sum_probs=78.0

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---------CCCCc
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------FASGF  237 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------~~~~~  237 (304)
                      ...|+++|||-=.....+.. .....++-+| .|..++..++.+...+.....+..++.+|+.+ .         +....
T Consensus       103 ~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~  179 (310)
T 2uyo_A          103 IRQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSA  179 (310)
T ss_dssp             CCEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTS
T ss_pred             CCeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCC
Confidence            35799999998776555542 2236899999 69999999999875442234678999999976 2         11223


Q ss_pred             cceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          238 VDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      -=++++-.+++|+++.  ..+++.+...+.||+.+++.....
T Consensus       180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~  221 (310)
T 2uyo_A          180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL  221 (310)
T ss_dssp             CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred             CEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence            3467778899999753  468888888888988888776543

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.31  E-value=0.033  Score=50.85  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=70.0

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CC------C
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP------F  233 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp------~  233 (304)
                      ....++.+||-+|+|. |.+..++++.....+|+++|.+++.++.+++.          ....+...-.+ +.      .
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~i~~~~~~~~~~~v~~~t  250 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----------GFEIADLSLDTPLHEQIAALL  250 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCEEEETTSSSCHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----------CCcEEccCCcchHHHHHHHHh
Confidence            3456788999999876 88888888874223799999999988888761          22333221111 00      0


Q ss_pred             CCCccceEEecchh---------ccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          234 ASGFVDAVHAGAAL---------HCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       234 ~~~~fD~V~~~~vl---------~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ....+|+|+-.-.-         .|.+++...+++..+.|++||++++...
T Consensus       251 ~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          251 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            12369999875432         2344566789999999999999887653

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.18  E-value=0.016  Score=53.02  Aligned_cols=105  Identities=14%  Similarity=0.119  Sum_probs=67.9

Q ss_pred             hhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-C------
Q 021975          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P------  232 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p------  232 (304)
                      .....++.+||-+|+|. |.+...+++.....+|+++|.+++.++.+++    .+      ...+...-.+. .      
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lG------a~~i~~~~~~~~~~~~~~~  249 (398)
T 2dph_A          180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AG------FETIDLRNSAPLRDQIDQI  249 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TT------CEEEETTSSSCHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cC------CcEEcCCCcchHHHHHHHH
Confidence            34556788999999987 8888888876322389999999998887765    12      23332221111 0      


Q ss_pred             CCCCccceEEecchhccC--------CCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 FASGFVDAVHAGAALHCW--------PSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~--------~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .....+|+|+..-.-...        .++...+++..+.|++||++++...
T Consensus       250 ~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          250 LGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             HSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             hCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence            012269999875432210        0233568999999999999886543

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.16  E-value=0.014  Score=53.74  Aligned_cols=62  Identities=11%  Similarity=0.136  Sum_probs=48.7

Q ss_pred             cCCCeEEEEcCCccHHHHHHH-HhCC-CCeEEEEeCCHHHHHHHHHHHHh--cCccCC-CCeEEEEccC
Q 021975          165 AQGGLLVDVSCGSGLFSRKFA-KSGT-YSGVVALDFSENMLRQCYDFIKQ--DNTILT-SNLALVRADV  228 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~-~~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~~~~-~~i~~~~~d~  228 (304)
                      .++.+++|||++.|.++..++ +.++ ..+|+++|+++...+..+++++.  ++  .. .++.++..-+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~--~~~~~v~~~~~al  291 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT--NFASRITVHGCGA  291 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS--TTGGGEEEECSEE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhcc--CCCCCEEEEEeEE
Confidence            568899999999999999887 4443 36999999999999999999987  22  12 4666665444

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.74  E-value=0.053  Score=48.95  Aligned_cols=101  Identities=17%  Similarity=0.121  Sum_probs=66.3

Q ss_pred             hhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-----CCC
Q 021975          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFA  234 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~  234 (304)
                      .....++.+||-+|+|. |.+...+++.....+|+++|.+++.++.+++.    +    .. .++...-.++     ...
T Consensus       185 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~-~vi~~~~~~~~~~~~~~~  255 (371)
T 1f8f_A          185 ALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----G----AT-HVINSKTQDPVAAIKEIT  255 (371)
T ss_dssp             TTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHHHT
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C----CC-EEecCCccCHHHHHHHhc
Confidence            34456788999999986 88888888763223699999999988888763    1    11 1222211111     011


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .+.+|+|+..-.     . ...+++..+.|+++|++++....
T Consensus       256 ~gg~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~~  291 (371)
T 1f8f_A          256 DGGVNFALESTG-----S-PEILKQGVDALGILGKIAVVGAP  291 (371)
T ss_dssp             TSCEEEEEECSC-----C-HHHHHHHHHTEEEEEEEEECCCC
T ss_pred             CCCCcEEEECCC-----C-HHHHHHHHHHHhcCCEEEEeCCC
Confidence            236899886432     2 34688999999999999876543

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=95.62  E-value=0.051  Score=49.41  Aligned_cols=70  Identities=19%  Similarity=0.177  Sum_probs=55.7

Q ss_pred             CeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC--------CCCccc
Q 021975          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------ASGFVD  239 (304)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--------~~~~fD  239 (304)
                      .+++|+-||.|.++..+...|. ..+.++|+++.+++..+.++        ++..++++|+.++..        ....+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~-~~v~avE~d~~a~~t~~~N~--------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D   73 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAINF--------PRSLHVQEDVSLLNAEIIKGFFKNDMPID   73 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTC-EEEEEECSCHHHHHHHHHHC--------TTSEEECCCGGGCCHHHHHHHHCSCCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCC-cEEEEEeCCHHHHHHHHHhC--------CCCceEecChhhcCHHHHHhhcccCCCee
Confidence            4799999999999999999884 35679999999988888753        456788899877631        245799


Q ss_pred             eEEecch
Q 021975          240 AVHAGAA  246 (304)
Q Consensus       240 ~V~~~~v  246 (304)
                      +|+...-
T Consensus        74 ~i~ggpP   80 (376)
T 3g7u_A           74 GIIGGPP   80 (376)
T ss_dssp             EEEECCC
T ss_pred             EEEecCC
Confidence            9998654

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.60  E-value=0.046  Score=46.97  Aligned_cols=107  Identities=16%  Similarity=0.186  Sum_probs=71.1

Q ss_pred             CCeEEEEcCCccHHHHHHHHh-------CCCCeEEEEe-----CCHH-------------------HHHHHHHHH-----
Q 021975          167 GGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALD-----FSEN-------------------MLRQCYDFI-----  210 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~giD-----~s~~-------------------~~~~a~~~~-----  210 (304)
                      .+.|+|+|+-.|..+..++..       ++..+++|+|     +.+.                   ..+..++.+     
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            569999999999987776542       3567999999     3320                   111122211     


Q ss_pred             -HhcCccCCCCeEEEEccCCC-CC-----CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          211 -KQDNTILTSNLALVRADVCR-LP-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       211 -~~~~~~~~~~i~~~~~d~~~-lp-----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                       +..+. ...++.++.+++.+ +|     .+..+||+|+...-.  ...-...++.+...|+|||++++-++.
T Consensus       150 ~~~~g~-~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~  219 (257)
T 3tos_A          150 SDFFGH-VTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELD  219 (257)
T ss_dssp             TSTTTT-SCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             hhhcCC-CCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence             12221 13789999999965 22     235579999987632  122345788999999999999998875

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.52  E-value=0.031  Score=49.75  Aligned_cols=63  Identities=11%  Similarity=0.087  Sum_probs=50.8

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN  214 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~  214 (304)
                      +.+.++.+.+..... .++..|||.-||+|..+.+..+.+.  +++|+|+++..++.++++++..+
T Consensus       236 ~kp~~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~gr--~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          236 RFPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             CCCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSCSC
T ss_pred             cCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHhcc
Confidence            344566666665543 4688999999999999999988876  99999999999999999876543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.48  E-value=0.045  Score=44.57  Aligned_cols=94  Identities=20%  Similarity=0.139  Sum_probs=60.6

Q ss_pred             hcccCCCeEEEEcC--CccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------
Q 021975          162 FKSAQGGLLVDVSC--GSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (304)
Q Consensus       162 l~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (304)
                      ....++.+||.+|+  |.|.....++.. |.  +|+++|.+++..+.+++    .+    ... .+  |..+..      
T Consensus        34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~~~----~g----~~~-~~--d~~~~~~~~~~~  100 (198)
T 1pqw_A           34 GRLSPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAKREMLSR----LG----VEY-VG--DSRSVDFADEIL  100 (198)
T ss_dssp             SCCCTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHT----TC----CSE-EE--ETTCSTHHHHHH
T ss_pred             hCCCCCCEEEEeeCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH----cC----CCE-Ee--eCCcHHHHHHHH
Confidence            34456889999995  456665555554 65  99999999887766644    12    111 12  322211      


Q ss_pred             --CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                        .....+|+|+....       ...+++..+.|++||+++....
T Consensus       101 ~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          101 ELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             HHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECSC
T ss_pred             HHhCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEEcC
Confidence              11236999986542       2468889999999999887654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.45  E-value=0.055  Score=48.36  Aligned_cols=94  Identities=14%  Similarity=0.125  Sum_probs=64.9

Q ss_pred             cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceE
Q 021975          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (304)
                      ...++.+||-+|+|. |.+...+++.. +.+|+++|.+++..+.+++.    +    ....+  .+...+  . ..+|+|
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~~v~--~~~~~~--~-~~~D~v  238 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSM----G----VKHFY--TDPKQC--K-EELDFI  238 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHT----T----CSEEE--SSGGGC--C-SCEEEE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhc----C----CCeec--CCHHHH--h-cCCCEE
Confidence            556788999999986 77888888764 34999999999888888762    1    22222  332222  2 279999


Q ss_pred             EecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +..-.-.      ..+....+.|+++|++++....
T Consensus       239 id~~g~~------~~~~~~~~~l~~~G~iv~~G~~  267 (348)
T 3two_A          239 ISTIPTH------YDLKDYLKLLTYNGDLALVGLP  267 (348)
T ss_dssp             EECCCSC------CCHHHHHTTEEEEEEEEECCCC
T ss_pred             EECCCcH------HHHHHHHHHHhcCCEEEEECCC
Confidence            8643211      2477888999999999987543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.38  E-value=0.044  Score=48.66  Aligned_cols=62  Identities=18%  Similarity=0.324  Sum_probs=49.3

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCH---HHHHHHHHHHHhc
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE---NMLRQCYDFIKQD  213 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~---~~~~~a~~~~~~~  213 (304)
                      +.+.++.+.+..... .++..|||.-||+|..+.+..+.+.  +++|+|+++   ..++.++++++..
T Consensus       226 ~kp~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r--~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          226 QKPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             CCCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC---
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCC--cEEEEECCccHHHHHHHHHHHHHHc
Confidence            345666666665554 4688999999999999999999886  999999999   9999999987543

>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=95.31  E-value=0.005  Score=46.57  Aligned_cols=29  Identities=14%  Similarity=0.362  Sum_probs=25.1

Q ss_pred             cccccCceeeCCCCccccCCCCeeeeecc
Q 021975           81 GAIYRSGFKCRKCDKTYSSKDNYLDLTVI  109 (304)
Q Consensus        81 ~~i~~~~l~C~~C~~~~~~~~g~~~~~~~  109 (304)
                      -.+.+|.+.|+.||+.|++++|+++++..
T Consensus        93 ~~V~EG~L~Cp~cgr~ypI~~GIPNm~~~  121 (125)
T 3q87_A           93 IDVVEGSLRCDMCGLIYPIKGSIVETVDT  121 (125)
T ss_dssp             EEEEEEEEEETTTCCEEEEETTEEECSSC
T ss_pred             eEEEEEEEECCCCCCEeeccCCcccHHHh
Confidence            34567899999999999999999998754

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.08  E-value=0.11  Score=46.45  Aligned_cols=99  Identities=15%  Similarity=0.143  Sum_probs=64.9

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc---CCC----CC-
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD---VCR----LP-  232 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d---~~~----lp-  232 (304)
                      ....++.+||-+|+|. |.+...+++.....+|+++|.++...+.+++.    +    .. .++..+   ..+    +. 
T Consensus       167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~-~vi~~~~~~~~~~~~~i~~  237 (356)
T 1pl8_A          167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----G----AD-LVLQISKESPQEIARKVEG  237 (356)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T----CS-EEEECSSCCHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C----CC-EEEcCcccccchHHHHHHH
Confidence            4456788999999986 78888888764223899999999888888752    1    21 222211   000    00 


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ...+.+|+|+..-.     . ...++...+.|++||+++....
T Consensus       238 ~~~~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          238 QLGCKPEVTIECTG-----A-EASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             HHTSCCSEEEECSC-----C-HHHHHHHHHHSCTTCEEEECSC
T ss_pred             HhCCCCCEEEECCC-----C-hHHHHHHHHHhcCCCEEEEEec
Confidence            00146899886432     2 2457888999999999987654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.05  E-value=0.017  Score=51.97  Aligned_cols=71  Identities=13%  Similarity=0.085  Sum_probs=54.9

Q ss_pred             CeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCccceEEe
Q 021975          168 GLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHA  243 (304)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~~  243 (304)
                      .+++|+-||.|.+...+...|. ...++++|+++.+++..+.++        .+..++.+|+.++.   ++...+|+|+.
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~--------~~~~~~~~Di~~~~~~~~~~~~~D~l~~   74 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF--------PHTQLLAKTIEGITLEEFDRLSFDMILM   74 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc--------cccccccCCHHHccHhHcCcCCcCEEEE
Confidence            5799999999999999999873 136899999999999998865        33457788887764   11125899998


Q ss_pred             cch
Q 021975          244 GAA  246 (304)
Q Consensus       244 ~~v  246 (304)
                      ..-
T Consensus        75 gpP   77 (343)
T 1g55_A           75 SPP   77 (343)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            654

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.04  E-value=0.23  Score=44.28  Aligned_cols=98  Identities=16%  Similarity=0.123  Sum_probs=64.2

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC-CCCC------C
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP------F  233 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp------~  233 (304)
                      ....++.+||-+|+|. |.+...+++.. +.+|+++|.+++..+.+++.    +    .. .++..+- .+..      .
T Consensus       164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~-~~~~~~~~~~~~~~i~~~~  233 (352)
T 1e3j_A          164 AGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC----G----AD-VTLVVDPAKEEESSIIERI  233 (352)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT----T----CS-EEEECCTTTSCHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh----C----CC-EEEcCcccccHHHHHHHHh
Confidence            3456788999999875 77777777763 33799999999988888752    2    22 2222110 1110      0


Q ss_pred             C---CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          234 A---SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       234 ~---~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .   ...+|+|+..-.     . ...++...+.|+++|+++....
T Consensus       234 ~~~~g~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          234 RSAIGDLPNVTIDCSG-----N-EKCITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             HHHSSSCCSEEEECSC-----C-HHHHHHHHHHSCTTCEEEECSC
T ss_pred             ccccCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence            1   246899886432     2 3457888999999999987654

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.95  E-value=0.12  Score=45.81  Aligned_cols=94  Identities=12%  Similarity=0.020  Sum_probs=61.7

Q ss_pred             hcccCCCeEEEEcC--CccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CC-----
Q 021975          162 FKSAQGGLLVDVSC--GSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-----  232 (304)
Q Consensus       162 l~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-----  232 (304)
                      ....++.+||-.|+  |.|.....+++. |.  +|+++|.+++.++.+++ +   +    ... .+  |..+ ..     
T Consensus       141 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~~~-~---g----~~~-~~--d~~~~~~~~~~~  207 (333)
T 1v3u_A          141 CGVKGGETVLVSAAAGAVGSVVGQIAKLKGC--KVVGAAGSDEKIAYLKQ-I---G----FDA-AF--NYKTVNSLEEAL  207 (333)
T ss_dssp             SCCCSSCEEEEESTTBHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-T---T----CSE-EE--ETTSCSCHHHHH
T ss_pred             hCCCCCCEEEEecCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHh-c---C----CcE-EE--ecCCHHHHHHHH
Confidence            34556889999998  456666666654 54  99999999988877743 1   1    111 11  3322 11     


Q ss_pred             --CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                        ...+.+|+|+....-       ..+.+..+.|++||++++...
T Consensus       208 ~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          208 KKASPDGYDCYFDNVGG-------EFLNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             HHHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEECCC
T ss_pred             HHHhCCCCeEEEECCCh-------HHHHHHHHHHhcCCEEEEEec
Confidence              112469998876531       347888999999999887653

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.79  E-value=0.17  Score=45.59  Aligned_cols=101  Identities=20%  Similarity=0.224  Sum_probs=66.8

Q ss_pred             hhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-----C--
Q 021975          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P--  232 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p--  232 (304)
                      .....++.+||-+|+|. |.++..+++.....+|+++|.++...+.+++.    +    .. .++...-.++     .  
T Consensus       177 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~-~vi~~~~~~~~~~i~~~~  247 (370)
T 4ej6_A          177 LSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----G----AT-ATVDPSAGDVVEAIAGPV  247 (370)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----T----CS-EEECTTSSCHHHHHHSTT
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----C----CC-EEECCCCcCHHHHHHhhh
Confidence            34456788999999976 77788888774234899999999988888763    1    11 1221111110     0  


Q ss_pred             -CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                       ...+.+|+|+-.-     .. ...++++.+.|++||++++....
T Consensus       248 ~~~~gg~Dvvid~~-----G~-~~~~~~~~~~l~~~G~vv~~G~~  286 (370)
T 4ej6_A          248 GLVPGGVDVVIECA-----GV-AETVKQSTRLAKAGGTVVILGVL  286 (370)
T ss_dssp             SSSTTCEEEEEECS-----CC-HHHHHHHHHHEEEEEEEEECSCC
T ss_pred             hccCCCCCEEEECC-----CC-HHHHHHHHHHhccCCEEEEEecc
Confidence             1234799998643     12 34688999999999999886543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.70  E-value=0.091  Score=47.28  Aligned_cols=100  Identities=14%  Similarity=0.097  Sum_probs=66.4

Q ss_pred             hhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------C
Q 021975          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------F  233 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~  233 (304)
                      .....++.+||-+|+|. |.....+++.. +.+|+++|.+++.++.+++.    +    .. .++..+..++.      .
T Consensus       184 ~~~~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~-~vi~~~~~~~~~~v~~~~  253 (363)
T 3uog_A          184 KGHLRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFAL----G----AD-HGINRLEEDWVERVYALT  253 (363)
T ss_dssp             TTCCCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHc----C----CC-EEEcCCcccHHHHHHHHh
Confidence            34456788999999876 77777777763 34999999999988887662    1    11 22222211110      1


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ....+|+|+..-.       ...+....+.|++||++++.....
T Consensus       254 ~g~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~G~~~  290 (363)
T 3uog_A          254 GDRGADHILEIAG-------GAGLGQSLKAVAPDGRISVIGVLE  290 (363)
T ss_dssp             TTCCEEEEEEETT-------SSCHHHHHHHEEEEEEEEEECCCS
T ss_pred             CCCCceEEEECCC-------hHHHHHHHHHhhcCCEEEEEecCC
Confidence            1336999987543       124778889999999998876543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.68  E-value=0.08  Score=47.09  Aligned_cols=98  Identities=18%  Similarity=0.229  Sum_probs=65.1

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--C--CCC
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F--ASG  236 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~--~~~  236 (304)
                      ....++.+||-+|+|. |.....+++.. +.+|+++|.+++..+.+++.    +    ... ++...-.+..  +  ..+
T Consensus       162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~~-~i~~~~~~~~~~~~~~~g  231 (340)
T 3s2e_A          162 TDTRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRL----G----AEV-AVNARDTDPAAWLQKEIG  231 (340)
T ss_dssp             TTCCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT----T----CSE-EEETTTSCHHHHHHHHHS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHc----C----CCE-EEeCCCcCHHHHHHHhCC
Confidence            3456788999999986 88888888864 34999999999998888762    1    221 2221111110  0  013


Q ss_pred             ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .+|+|+....      -...++.+.+.|+++|++++...
T Consensus       232 ~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          232 GAHGVLVTAV------SPKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             SEEEEEESSC------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCEEEEeCC------CHHHHHHHHHHhccCCEEEEeCC
Confidence            5888876421      13468899999999999987654

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.62  E-value=0.19  Score=45.17  Aligned_cols=92  Identities=16%  Similarity=0.181  Sum_probs=61.7

Q ss_pred             CCCeEEEEc-CC-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-----CCCCCcc
Q 021975          166 QGGLLVDVS-CG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASGFV  238 (304)
Q Consensus       166 ~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~f  238 (304)
                      ++.+||-+| +| .|.+...+++.....+|+++|.+++.++.+++.    +    .. .++... .++     ....+.+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l----G----ad-~vi~~~-~~~~~~v~~~~~~g~  240 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL----G----AH-HVIDHS-KPLAAEVAALGLGAP  240 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT----T----CS-EEECTT-SCHHHHHHTTCSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc----C----CC-EEEeCC-CCHHHHHHHhcCCCc
Confidence            577899998 55 488888888862245999999999888888762    1    11 112111 111     0123579


Q ss_pred             ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEE
Q 021975          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~  273 (304)
                      |+|+..-.      -...++++.+.|+++|++++.
T Consensus       241 Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          241 AFVFSTTH------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             eEEEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence            98886432      234688999999999999876

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.46  E-value=0.19  Score=44.87  Aligned_cols=102  Identities=14%  Similarity=0.181  Sum_probs=67.1

Q ss_pred             HhhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------
Q 021975          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (304)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (304)
                      ......++.+||-+|+|. |.+...+++.....+|+++|.+++.++.+++.    +    .. .++..+-.++.      
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----G----a~-~vi~~~~~~~~~~v~~~  230 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----G----AT-DIINYKNGDIVEQILKA  230 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----T----CC-EEECGGGSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----C----Cc-eEEcCCCcCHHHHHHHH
Confidence            344556788999999886 77888888774223899999999988888773    1    11 12221111110      


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .....+|+|+..-.     . ...+++..+.|++||+++.....
T Consensus       231 t~g~g~D~v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~G~~  268 (352)
T 3fpc_A          231 TDGKGVDKVVIAGG-----D-VHTFAQAVKMIKPGSDIGNVNYL  268 (352)
T ss_dssp             TTTCCEEEEEECSS-----C-TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             cCCCCCCEEEECCC-----C-hHHHHHHHHHHhcCCEEEEeccc
Confidence            11336999986432     2 23588899999999999876544

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=94.45  E-value=0.023  Score=37.00  Aligned_cols=31  Identities=16%  Similarity=0.304  Sum_probs=21.9

Q ss_pred             CCeeeccCCCc-cccccCCCCccccccccCceeeCCCCccc
Q 021975           58 GDLFSCPICYE-PLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        58 ~~~l~CP~C~~-~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      +..+.||.|++ ++....         ..+.+.|..||.++
T Consensus         9 l~~~~Cp~C~~~~lv~D~---------~~ge~vC~~CGlVl   40 (58)
T 1dl6_A            9 LPRVTCPNHPDAILVEDY---------RAGDMICPECGLVV   40 (58)
T ss_dssp             CSCCSBTTBSSSCCEECS---------SSCCEECTTTCCEE
T ss_pred             cccccCcCCCCCceeEeC---------CCCeEEeCCCCCEE
Confidence            34568999998 443322         23789999999876

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.43  E-value=0.39  Score=42.94  Aligned_cols=102  Identities=14%  Similarity=0.103  Sum_probs=67.1

Q ss_pred             hhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC---CC-----
Q 021975          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC---RL-----  231 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~---~l-----  231 (304)
                      .....++.+||-+|+|. |.+..++++......|+++|.+++..+.+++. .       ..+.....+..   ++     
T Consensus       174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~-------~~~~~~~~~~~~~~~~~~~v~  245 (363)
T 3m6i_A          174 RAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C-------PEVVTHKVERLSAEESAKKIV  245 (363)
T ss_dssp             HHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C-------TTCEEEECCSCCHHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c-------hhcccccccccchHHHHHHHH
Confidence            34456788999999976 77888888774222499999999999998874 2       12222221110   00     


Q ss_pred             -CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          232 -PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       232 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                       ......+|+|+-.-.     . ...+....+.|++||++++....
T Consensus       246 ~~t~g~g~Dvvid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~~  285 (363)
T 3m6i_A          246 ESFGGIEPAVALECTG-----V-ESSIAAAIWAVKFGGKVFVIGVG  285 (363)
T ss_dssp             HHTSSCCCSEEEECSC-----C-HHHHHHHHHHSCTTCEEEECCCC
T ss_pred             HHhCCCCCCEEEECCC-----C-hHHHHHHHHHhcCCCEEEEEccC
Confidence             012346899887432     2 24578899999999999887543

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.43  E-value=0.13  Score=45.74  Aligned_cols=102  Identities=12%  Similarity=0.120  Sum_probs=69.2

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCC-CCeE-EEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCccceE
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGT-YSGV-VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAV  241 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v-~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V  241 (304)
                      ..+++|+-||.|.+...+.+.|. ...+ .++|+++.+++..+.++..        . ++.+|+.++.   ++...+|++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~--------~-~~~~DI~~~~~~~i~~~~~Dil   80 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE--------E-VQVKNLDSISIKQIESLNCNTW   80 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC--------C-CBCCCTTTCCHHHHHHTCCCEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC--------C-cccCChhhcCHHHhccCCCCEE
Confidence            45899999999999999999873 2356 7999999999888887531        1 5678887764   222368999


Q ss_pred             EecchhccC-----------CCHH-HHHHHHHH-hccc---CcEEEEEEeCC
Q 021975          242 HAGAALHCW-----------PSPS-NAVAEISR-ILRS---GGVFVGTTFLR  277 (304)
Q Consensus       242 ~~~~vl~h~-----------~d~~-~~l~~~~r-~Lkp---gG~lvi~~~~~  277 (304)
                      +...-...+           .|+. .++.++.+ +++.   .-.+++.+...
T Consensus        81 ~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~  132 (327)
T 3qv2_A           81 FMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVP  132 (327)
T ss_dssp             EECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECG
T ss_pred             EecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchh
Confidence            986443333           3444 46666666 5542   12455655554

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=94.43  E-value=0.086  Score=46.42  Aligned_cols=106  Identities=13%  Similarity=0.107  Sum_probs=61.2

Q ss_pred             CCCeEEEEcCCccHHHHHH----HHhCCCC--eEEEEeCCH--------H-HHHHHHHHHHhcCcc--CCCCeEEEEccC
Q 021975          166 QGGLLVDVSCGSGLFSRKF----AKSGTYS--GVVALDFSE--------N-MLRQCYDFIKQDNTI--LTSNLALVRADV  228 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l----~~~~~~~--~v~giD~s~--------~-~~~~a~~~~~~~~~~--~~~~i~~~~~d~  228 (304)
                      +.-+|||+|-|+|......    .+..+..  .++.+|..+        . ..+..+.........  ....+.+..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            3458999999999864322    2335443  456666421        1 111122222211100  123456778887


Q ss_pred             CC-CC-CCCCccceEEecchhccCCCH----HHHHHHHHHhcccCcEEEE
Q 021975          229 CR-LP-FASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVG  272 (304)
Q Consensus       229 ~~-lp-~~~~~fD~V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~lvi  272 (304)
                      .. ++ +.+..||+|+... +---.+|    ..++++++++++|||+|+-
T Consensus       176 ~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             HHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            54 33 3455799999854 2222355    3799999999999998763

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.38  E-value=0.08  Score=47.85  Aligned_cols=94  Identities=17%  Similarity=0.189  Sum_probs=62.6

Q ss_pred             cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc----CCCCCCCCCc
Q 021975          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD----VCRLPFASGF  237 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d----~~~lp~~~~~  237 (304)
                      ...++.+||-+|+|. |.+...+++.. +.+|+++|.+++.++.+++.    +    .. .++...    ...+  . +.
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~l----G----a~-~vi~~~~~~~~~~~--~-~g  257 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL----G----AD-EVVNSRNADEMAAH--L-KS  257 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH----T----CS-EEEETTCHHHHHTT--T-TC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C----Cc-EEeccccHHHHHHh--h-cC
Confidence            455788999999985 77777777763 34899999999888888762    1    11 122111    1111  1 46


Q ss_pred             cceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +|+|+..-.-.      ..+++..+.|+++|+++....
T Consensus       258 ~Dvvid~~g~~------~~~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          258 FDFILNTVAAP------HNLDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             EEEEEECCSSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred             CCEEEECCCCH------HHHHHHHHHhccCCEEEEecc
Confidence            99988653211      236778899999999887543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=94.17  E-value=0.066  Score=47.12  Aligned_cols=93  Identities=10%  Similarity=0.031  Sum_probs=60.5

Q ss_pred             HhhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCcc
Q 021975          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (304)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f  238 (304)
                      ......++.+||-+|+|. |.+...+++.. +.+|++++ +++..+.+++.    +      ...+..|...+   .+.+
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~l----G------a~~v~~d~~~v---~~g~  200 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKR----G------VRHLYREPSQV---TQKY  200 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHH----T------EEEEESSGGGC---CSCE
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHc----C------CCEEEcCHHHh---CCCc
Confidence            344556789999999974 77878887763 23999999 88888888762    1      22222232222   5679


Q ss_pred             ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      |+|+-.-.     .+  .+.+..+.|+++|+++...
T Consensus       201 Dvv~d~~g-----~~--~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          201 FAIFDAVN-----SQ--NAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             EEEECC--------------TTGGGEEEEEEEEEEC
T ss_pred             cEEEECCC-----ch--hHHHHHHHhcCCCEEEEEe
Confidence            99886432     11  2356788999999988873

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=94.08  E-value=0.18  Score=44.91  Aligned_cols=98  Identities=12%  Similarity=0.164  Sum_probs=65.4

Q ss_pred             cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------CCC
Q 021975          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FAS  235 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~  235 (304)
                      ...++.+||-+|+|. |.+...+++.....+|+++|.+++..+.+++.    +    ... ++..+ .+..      ...
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l----G----a~~-~i~~~-~~~~~~v~~~t~g  237 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV----G----ADA-AVKSG-AGAADAIRELTGG  237 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT----T----CSE-EEECS-TTHHHHHHHHHGG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----C----CCE-EEcCC-CcHHHHHHHHhCC
Confidence            445688999999976 77888888763245999999999998888762    1    221 22211 1110      012


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ..+|+|+-.-     .. ...++...+.|+++|++++....
T Consensus       238 ~g~d~v~d~~-----G~-~~~~~~~~~~l~~~G~iv~~G~~  272 (345)
T 3jv7_A          238 QGATAVFDFV-----GA-QSTIDTAQQVVAVDGHISVVGIH  272 (345)
T ss_dssp             GCEEEEEESS-----CC-HHHHHHHHHHEEEEEEEEECSCC
T ss_pred             CCCeEEEECC-----CC-HHHHHHHHHHHhcCCEEEEECCC
Confidence            3688888643     22 34688999999999999887543

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=93.98  E-value=0.27  Score=43.94  Aligned_cols=90  Identities=13%  Similarity=0.077  Sum_probs=59.2

Q ss_pred             CeEEEEcCCc-cHHH-HHHH-HhCCCCe-EEEEeCCHH---HHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC-----C
Q 021975          168 GLLVDVSCGS-GLFS-RKFA-KSGTYSG-VVALDFSEN---MLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-----S  235 (304)
Q Consensus       168 ~~vLDiGcG~-G~~~-~~l~-~~~~~~~-v~giD~s~~---~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-----~  235 (304)
                      .+||-+|+|. |.+. ..++ +.. +.+ |+++|.+++   ..+.+++    .      ....+  |..+..+.     .
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~----l------Ga~~v--~~~~~~~~~i~~~~  240 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEE----L------DATYV--DSRQTPVEDVPDVY  240 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHH----T------TCEEE--ETTTSCGGGHHHHS
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHH----c------CCccc--CCCccCHHHHHHhC
Confidence            8999999864 6777 7777 653 335 999999887   7777765    1      22333  32221111     1


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +.+|+|+-.-     .. ...++++.+.|+++|+++.....
T Consensus       241 gg~Dvvid~~-----g~-~~~~~~~~~~l~~~G~iv~~g~~  275 (357)
T 2b5w_A          241 EQMDFIYEAT-----GF-PKHAIQSVQALAPNGVGALLGVP  275 (357)
T ss_dssp             CCEEEEEECS-----CC-HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             CCCCEEEECC-----CC-hHHHHHHHHHHhcCCEEEEEeCC
Confidence            3688887643     22 23588899999999998876543

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=93.89  E-value=0.3  Score=44.45  Aligned_cols=45  Identities=9%  Similarity=0.109  Sum_probs=33.9

Q ss_pred             CCeEEEEcCCccHHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHHH
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSG-------TYSGVVALDFSENMLRQCYDFIK  211 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~-------~~~~v~giD~s~~~~~~a~~~~~  211 (304)
                      .-.|+|+|.|.|.+...+.+..       ...+++.||+|+...+.-++.++
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  132 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  132 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence            4479999999999977665431       23489999999988876666554

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=93.86  E-value=0.35  Score=43.49  Aligned_cols=99  Identities=15%  Similarity=0.139  Sum_probs=63.9

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC--CCCC-----C
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRLP-----F  233 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~lp-----~  233 (304)
                      ....++.+||-+|+|. |.....+++.....+|+++|.+++.++.+++.    +    .. .++...-  .++.     .
T Consensus       187 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~~~~~  257 (374)
T 2jhf_A          187 AKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----G----AT-ECVNPQDYKKPIQEVLTEM  257 (374)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----T----CS-EEECGGGCSSCHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----C----Cc-eEecccccchhHHHHHHHH
Confidence            3455788999999875 77777887764223799999999888887651    1    11 1221110  1110     1


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEe
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~  275 (304)
                      ..+.+|+|+..-     .. ...++...+.|+++ |++++...
T Consensus       258 ~~~g~D~vid~~-----g~-~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          258 SNGGVDFSFEVI-----GR-LDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             TTSCBSEEEECS-----CC-HHHHHHHHHHBCTTTCEEEECSC
T ss_pred             hCCCCcEEEECC-----CC-HHHHHHHHHHhhcCCcEEEEecc
Confidence            123689888643     22 34578899999999 99887653

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=93.86  E-value=0.28  Score=44.18  Aligned_cols=99  Identities=14%  Similarity=0.123  Sum_probs=64.1

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc-C-CCCC-----C
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-V-CRLP-----F  233 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-~-~~lp-----~  233 (304)
                      ....++.+||-+|+|. |.+...+++.....+|+++|.+++.++.+++.    +    .. .++... . .++.     .
T Consensus       187 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~-~vi~~~~~~~~~~~~i~~~  257 (373)
T 1p0f_A          187 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----G----AT-ECLNPKDYDKPIYEVICEK  257 (373)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----T----CS-EEECGGGCSSCHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C----Cc-EEEecccccchHHHHHHHH
Confidence            3455788999999875 77777777763223799999999888887651    1    11 122111 0 1110     1


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEe
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~  275 (304)
                      ..+.+|+|+-.-.     . ...++...+.|+++ |++++...
T Consensus       258 t~gg~Dvvid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          258 TNGGVDYAVECAG-----R-IETMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             TTSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             hCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCCEEEEEcc
Confidence            1236899886432     2 34688899999999 99887654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=93.84  E-value=0.25  Score=43.65  Aligned_cols=100  Identities=10%  Similarity=0.015  Sum_probs=64.3

Q ss_pred             HhhcccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----
Q 021975          160 EYFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (304)
Q Consensus       160 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----  232 (304)
                      +.....++.+||-+|+  |.|.....+++.. +.+|+++|.+++.++.+.+.+   +    .. ..+...-.+..     
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~---g----~~-~~~~~~~~~~~~~~~~  213 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEEL---G----FD-GAIDYKNEDLAAGLKR  213 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTT---C----CS-EEEETTTSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc---C----CC-EEEECCCHHHHHHHHH
Confidence            3445567889999998  4577777777653 339999999998887773321   1    11 12221111110     


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ...+.+|+|+....       ...+....+.|+++|++++...
T Consensus       214 ~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          214 ECPKGIDVFFDNVG-------GEILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             HCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred             hcCCCceEEEECCC-------cchHHHHHHHHhhCCEEEEEee
Confidence            11246999887543       2368889999999999987654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=93.84  E-value=0.28  Score=44.11  Aligned_cols=99  Identities=17%  Similarity=0.190  Sum_probs=64.0

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc-C-CCCC-----C
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-V-CRLP-----F  233 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-~-~~lp-----~  233 (304)
                      ....++.+||-+|+|. |.+...+++.....+|+++|.+++.++.+++.    +    .. .++... . .++.     .
T Consensus       188 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~~~~~  258 (374)
T 1cdo_A          188 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----G----AT-DFVNPNDHSEPISQVLSKM  258 (374)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----T----CC-EEECGGGCSSCHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----C----Cc-eEEeccccchhHHHHHHHH
Confidence            3456788999999875 77777888764223799999999888887751    1    11 122111 0 1110     1


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEe
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~  275 (304)
                      ..+.+|+|+..-.     . ...++...+.|+++ |++++...
T Consensus       259 ~~~g~D~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          259 TNGGVDFSLECVG-----N-VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             HTSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             hCCCCCEEEECCC-----C-HHHHHHHHHHhhcCCcEEEEEcC
Confidence            1236898886432     2 34688899999999 99887654

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=93.80  E-value=0.25  Score=43.82  Aligned_cols=99  Identities=15%  Similarity=0.194  Sum_probs=63.3

Q ss_pred             HhhcccCCCeEEEEcCC--ccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----
Q 021975          160 EYFKSAQGGLLVDVSCG--SGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----  232 (304)
Q Consensus       160 ~~l~~~~~~~vLDiGcG--~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----  232 (304)
                      ......++.+||-+|+|  .|.....+++. |.  +|+++|.+++.++.+++.    +    ... .+...-.++.    
T Consensus       138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~~l----g----a~~-~~~~~~~~~~~~~~  206 (340)
T 3gms_A          138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF--RLIAVTRNNKHTEELLRL----G----AAY-VIDTSTAPLYETVM  206 (340)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHH----T----CSE-EEETTTSCHHHHHH
T ss_pred             HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHhC----C----CcE-EEeCCcccHHHHHH
Confidence            33455678899999997  57777777765 54  999999999888888762    1    121 2221111110    


Q ss_pred             --CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                        .....+|+|+....-       ....+..+.|++||+++.....
T Consensus       207 ~~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G~~  245 (340)
T 3gms_A          207 ELTNGIGADAAIDSIGG-------PDGNELAFSLRPNGHFLTIGLL  245 (340)
T ss_dssp             HHTTTSCEEEEEESSCH-------HHHHHHHHTEEEEEEEEECCCT
T ss_pred             HHhCCCCCcEEEECCCC-------hhHHHHHHHhcCCCEEEEEeec
Confidence              113479999875431       1234455899999999887654

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.78  E-value=0.26  Score=43.72  Aligned_cols=96  Identities=10%  Similarity=-0.001  Sum_probs=62.7

Q ss_pred             hcccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC---CC----
Q 021975          162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---LP----  232 (304)
Q Consensus       162 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---lp----  232 (304)
                      ....++.+||-+|+  |.|.....+++.. +.+|+++|.+++.++.+++.+   +    ... .+  |..+   +.    
T Consensus       151 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~---g----~~~-~~--d~~~~~~~~~~~~  219 (345)
T 2j3h_A          151 CSPKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKF---G----FDD-AF--NYKEESDLTAALK  219 (345)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTS---C----CSE-EE--ETTSCSCSHHHHH
T ss_pred             hCCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc---C----Cce-EE--ecCCHHHHHHHHH
Confidence            34557889999997  4677777777653 249999999998877776321   1    111 22  2221   10    


Q ss_pred             -CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                       ...+.+|+|+....       ...+....+.|++||++++...
T Consensus       220 ~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          220 RCFPNGIDIYFENVG-------GKMLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             HHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred             HHhCCCCcEEEECCC-------HHHHHHHHHHHhcCCEEEEEcc
Confidence             01246899887543       1368889999999999887643

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=93.70  E-value=0.026  Score=35.49  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=24.1

Q ss_pred             cCCcCCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           54 LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        54 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ..+....--||.||++......         ...++|..||..+
T Consensus        13 ~kv~~~~k~CP~CG~~~fm~~~---------~~R~~C~kCG~t~   47 (50)
T 3j20_Y           13 GKVIRKNKFCPRCGPGVFMADH---------GDRWACGKCGYTE   47 (50)
T ss_dssp             SCEECSSEECSSSCSSCEEEEC---------SSEEECSSSCCEE
T ss_pred             CEEEEecccCCCCCCceEEecC---------CCeEECCCCCCEE
Confidence            3455556679999997543221         1689999999865

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=93.67  E-value=0.021  Score=40.10  Aligned_cols=30  Identities=23%  Similarity=0.627  Sum_probs=23.0

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ..+.||.||........         .+.|.|+.|+..+
T Consensus        26 ~~y~Cp~CG~~~v~r~a---------tGiW~C~~Cg~~~   55 (83)
T 1vq8_Z           26 EDHACPNCGEDRVDRQG---------TGIWQCSYCDYKF   55 (83)
T ss_dssp             SCEECSSSCCEEEEEEE---------TTEEEETTTCCEE
T ss_pred             ccCcCCCCCCcceeccC---------CCeEECCCCCCEe
Confidence            45899999997654332         2789999999876

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.60  E-value=0.63  Score=42.35  Aligned_cols=100  Identities=12%  Similarity=0.016  Sum_probs=64.1

Q ss_pred             cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------CCC
Q 021975          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FAS  235 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~  235 (304)
                      ...++.+||-+|+|. |.+...+++.....+|+++|.++..++.+++.-        .. .++..+-.++.      ...
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lG--------a~-~vi~~~~~~~~~~i~~~t~g  280 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELG--------AD-HVIDPTKENFVEAVLDYTNG  280 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHT--------CS-EEECTTTSCHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC--------CC-EEEcCCCCCHHHHHHHHhCC
Confidence            345688999999875 777778887753348999999999988887631        11 12221111110      112


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhc----ccCcEEEEEEeC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRIL----RSGGVFVGTTFL  276 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~L----kpgG~lvi~~~~  276 (304)
                      ..+|+|+-.     +..+...+..+.+.|    ++||++++....
T Consensus       281 ~g~D~vid~-----~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~  320 (404)
T 3ip1_A          281 LGAKLFLEA-----TGVPQLVWPQIEEVIWRARGINATVAIVARA  320 (404)
T ss_dssp             CCCSEEEEC-----SSCHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred             CCCCEEEEC-----CCCcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence            368988864     334544566666666    999999886543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.59  E-value=0.22  Score=44.91  Aligned_cols=101  Identities=18%  Similarity=0.174  Sum_probs=65.5

Q ss_pred             hhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc--CCCCC-----
Q 021975          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD--VCRLP-----  232 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d--~~~lp-----  232 (304)
                      .....++.+||-+|+|. |.+...+++.....+|+++|.+++.++.+++.    +    .. .++...  -.++.     
T Consensus       188 ~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~-~vi~~~~~~~~~~~~i~~  258 (378)
T 3uko_A          188 TAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF----G----VN-EFVNPKDHDKPIQEVIVD  258 (378)
T ss_dssp             TTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT----T----CC-EEECGGGCSSCHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C----Cc-EEEccccCchhHHHHHHH
Confidence            34456788999999975 77888887764223899999999888887651    1    11 122211  11110     


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEeC
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFL  276 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~~  276 (304)
                      ...+.+|+|+-.-     .. ...++...+.|++| |++++....
T Consensus       259 ~~~gg~D~vid~~-----g~-~~~~~~~~~~l~~g~G~iv~~G~~  297 (378)
T 3uko_A          259 LTDGGVDYSFECI-----GN-VSVMRAALECCHKGWGTSVIVGVA  297 (378)
T ss_dssp             HTTSCBSEEEECS-----CC-HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             hcCCCCCEEEECC-----CC-HHHHHHHHHHhhccCCEEEEEccc
Confidence            1123799988643     22 34588899999997 998886653

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=93.54  E-value=0.35  Score=42.92  Aligned_cols=95  Identities=23%  Similarity=0.235  Sum_probs=62.7

Q ss_pred             cccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC------C
Q 021975          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA------S  235 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~------~  235 (304)
                      ...++.+||-+|+|. |.....+++.. +.+|+++|.+++.++.+++    .+    .. .++  |..+..+.      .
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lG----a~-~~~--d~~~~~~~~~~~~~~  228 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE----LG----AD-LVV--NPLKEDAAKFMKEKV  228 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----TT----CS-EEE--CTTTSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----CC----CC-EEe--cCCCccHHHHHHHHh
Confidence            455688999999964 77777777653 3499999999998888765    12    11 112  32221110      0


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +.+|+|+....     . ...++...+.|+++|+++....
T Consensus       229 ~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          229 GGVHAAVVTAV-----S-KPAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             SSEEEEEESSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCEEEECCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence            36898876432     2 2467889999999999887654

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=93.41  E-value=0.36  Score=43.42  Aligned_cols=99  Identities=15%  Similarity=0.124  Sum_probs=63.9

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc-C-CCCC-----C
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-V-CRLP-----F  233 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-~-~~lp-----~  233 (304)
                      ....++.+||-+|+|. |.+...+++.....+|+++|.+++.++.+++.    +    .. .++... . .++.     .
T Consensus       191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~-~vi~~~~~~~~~~~~v~~~  261 (376)
T 1e3i_A          191 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----G----AT-DCLNPRELDKPVQDVITEL  261 (376)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----T----CS-EEECGGGCSSCHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----C----Cc-EEEccccccchHHHHHHHH
Confidence            3455788999999875 77778888774223799999999888887652    1    11 122111 0 1110     1


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEe
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~  275 (304)
                      ..+.+|+|+-.-     .. ...+++..+.|++| |++++...
T Consensus       262 ~~~g~Dvvid~~-----G~-~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          262 TAGGVDYSLDCA-----GT-AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             HTSCBSEEEESS-----CC-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             hCCCccEEEECC-----CC-HHHHHHHHHHhhcCCCEEEEECC
Confidence            123689888643     22 34688999999999 99887654

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=93.35  E-value=0.32  Score=43.71  Aligned_cols=99  Identities=17%  Similarity=0.210  Sum_probs=63.9

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc-cC-CCCC-----C
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV-CRLP-----F  233 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~-~~lp-----~  233 (304)
                      ....++.+||-+|+|. |.+...+++.....+|+++|.+++.++.+++.    +    .. .++.. +. .++.     .
T Consensus       186 ~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~v~~~  256 (373)
T 2fzw_A          186 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----G----AT-ECINPQDFSKPIQEVLIEM  256 (373)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----T----CS-EEECGGGCSSCHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C----Cc-eEeccccccccHHHHHHHH
Confidence            3456788999999875 77777777763223799999999888888752    1    11 12211 10 1110     1


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEe
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~  275 (304)
                      ..+.+|+|+..-.     . ...+++..+.|+++ |++++...
T Consensus       257 ~~~g~D~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          257 TDGGVDYSFECIG-----N-VKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             TTSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             hCCCCCEEEECCC-----c-HHHHHHHHHhhccCCcEEEEEec
Confidence            1236899886432     2 34588899999999 99887654

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=93.21  E-value=0.24  Score=44.05  Aligned_cols=68  Identities=16%  Similarity=0.159  Sum_probs=51.6

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC-CCccceEEecc
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA  245 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~  245 (304)
                      ..+++|+.||.|.+...+...|. ..++++|+++.+++..+.+....        .  .+|+.++... -..+|+|+...
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~-~~v~~~e~d~~a~~t~~~N~~~~--------~--~~Di~~~~~~~~~~~D~l~~gp   79 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEK--------P--EGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCC--------C--BSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHcCCC--------C--cCCHHHcCHhhCCCCCEEEECC
Confidence            46899999999999999999874 46889999999999988876321        1  5777665311 12589999863

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=93.18  E-value=0.38  Score=42.51  Aligned_cols=97  Identities=18%  Similarity=0.211  Sum_probs=63.6

Q ss_pred             cccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------CC
Q 021975          163 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA  234 (304)
Q Consensus       163 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~  234 (304)
                      ...++.+||-+|+  |.|.....+++.. +.+|+++|.+++.++.+++.    +    .. .++..+-.++.      ..
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g----a~-~~~~~~~~~~~~~~~~~~~  214 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEY----G----AE-YLINASKEDILRQVLKFTN  214 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----CS-EEEETTTSCHHHHHHHHTT
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C----Cc-EEEeCCCchHHHHHHHHhC
Confidence            4567889999994  3577777777663 34999999999888877662    1    11 12222111110      11


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ...+|+|+....-       ..++...+.|++||+++.....
T Consensus       215 ~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~~  249 (334)
T 3qwb_A          215 GKGVDASFDSVGK-------DTFEISLAALKRKGVFVSFGNA  249 (334)
T ss_dssp             TSCEEEEEECCGG-------GGHHHHHHHEEEEEEEEECCCT
T ss_pred             CCCceEEEECCCh-------HHHHHHHHHhccCCEEEEEcCC
Confidence            3469999875432       3578888999999999886543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=93.17  E-value=0.18  Score=44.85  Aligned_cols=95  Identities=17%  Similarity=0.169  Sum_probs=61.7

Q ss_pred             cccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC---CCC-----
Q 021975          163 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC---RLP-----  232 (304)
Q Consensus       163 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~---~lp-----  232 (304)
                      ...++.+||-+|+  |.|..+..+++.. +.+|+++|.+++..+.+++    .+    .. ..+  |..   ++.     
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~----~g----~~-~~~--d~~~~~~~~~~~~~  233 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRS----IG----GE-VFI--DFTKEKDIVGAVLK  233 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHH----TT----CC-EEE--ETTTCSCHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHH----cC----Cc-eEE--ecCccHhHHHHHHH
Confidence            4556889999998  4677776666653 2399999998887776655    12    11 122  332   110     


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ...+.+|+|+....      ....++.+.+.|+++|+++....
T Consensus       234 ~~~~~~D~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          234 ATDGGAHGVINVSV------SEAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             HHTSCEEEEEECSS------CHHHHHHHTTSEEEEEEEEECCC
T ss_pred             HhCCCCCEEEECCC------cHHHHHHHHHHHhcCCEEEEEeC
Confidence            00126898887543      13468889999999999887654

>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5

Probab=93.11  E-value=0.054  Score=40.76  Aligned_cols=35  Identities=20%  Similarity=0.468  Sum_probs=26.4

Q ss_pred             cCCcCCeeeccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975           54 LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        54 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      ..+...+-.||.|+++....+.          ..+.|+.|++.+.
T Consensus        21 g~~M~~lP~CP~C~seytYeDg----------~l~vCPeC~hEW~   55 (138)
T 2akl_A           21 GHMVSTLPPCPQCNSEYTYEDG----------ALLVCPECAHEWS   55 (138)
T ss_dssp             --CCCCSCCCTTTCCCCCEECS----------SSEEETTTTEEEC
T ss_pred             ccccccCCCCCCCCCcceEecC----------CeEECCccccccC
Confidence            3444467889999999877553          5799999999884

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=93.06  E-value=0.42  Score=42.65  Aligned_cols=95  Identities=12%  Similarity=0.069  Sum_probs=61.8

Q ss_pred             hcccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-------
Q 021975          162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------  232 (304)
Q Consensus       162 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------  232 (304)
                      ....++.+||-.|+  |.|.....+++.. +.+|+++|.+++.++.+++.    +    .. ..+  |..+..       
T Consensus       166 ~~~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g----a~-~~~--d~~~~~~~~~~~~  233 (351)
T 1yb5_A          166 ACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN----G----AH-EVF--NHREVNYIDKIKK  233 (351)
T ss_dssp             SCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----CS-EEE--ETTSTTHHHHHHH
T ss_pred             hCCCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHc----C----CC-EEE--eCCCchHHHHHHH
Confidence            34556889999997  4566666666653 24999999999888776541    1    11 122  222111       


Q ss_pred             -CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                       .....+|+|+....       ...+....+.|+++|+++....
T Consensus       234 ~~~~~~~D~vi~~~G-------~~~~~~~~~~l~~~G~iv~~g~  270 (351)
T 1yb5_A          234 YVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVGS  270 (351)
T ss_dssp             HHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             HcCCCCcEEEEECCC-------hHHHHHHHHhccCCCEEEEEec
Confidence             11236999987643       2357788999999999887653

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=93.03  E-value=0.66  Score=41.07  Aligned_cols=98  Identities=16%  Similarity=0.138  Sum_probs=60.6

Q ss_pred             cccCCCeEEEEcCCcc-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------CCC
Q 021975          163 KSAQGGLLVDVSCGSG-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FAS  235 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~  235 (304)
                      ...++.+||=+|+|.+ .+...+++.....+|+++|.+++-++.+++.        .....+-..+ .+..      ...
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~--------Ga~~~i~~~~-~~~~~~v~~~t~g  230 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI--------GADVTINSGD-VNPVDEIKKITGG  230 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT--------TCSEEEEC-C-CCHHHHHHHHTTS
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc--------CCeEEEeCCC-CCHHHHhhhhcCC
Confidence            4567889999999874 4455555543356999999999888777762        1222221111 1110      112


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ..+|.++...+      -...+....+.|+++|++++...
T Consensus       231 ~g~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          231 LGVQSAIVCAV------ARIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             SCEEEEEECCS------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCceEEEEecc------CcchhheeheeecCCceEEEEec
Confidence            34666655321      24568889999999999887654

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=92.86  E-value=0.49  Score=42.04  Aligned_cols=91  Identities=13%  Similarity=0.166  Sum_probs=59.7

Q ss_pred             CCCeEEEEc-CC-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CCCCcc
Q 021975          166 QGGLLVDVS-CG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASGFV  238 (304)
Q Consensus       166 ~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~~f  238 (304)
                      ++.+||-+| +| .|.....+++.. +.+|+++|.+++.++.+++.    +    .. .++..+ .++.     ...+.+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~-~vi~~~-~~~~~~~~~~~~~g~  218 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKM----G----AD-IVLNHK-ESLLNQFKTQGIELV  218 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHH----T----CS-EEECTT-SCHHHHHHHHTCCCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C----Cc-EEEECC-ccHHHHHHHhCCCCc
Confidence            688999994 55 377777777763 34999999999988888772    1    11 112111 1110     123469


Q ss_pred             ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEE
Q 021975          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~  273 (304)
                      |+|+....      -...+..+.+.|+++|+++..
T Consensus       219 Dvv~d~~g------~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          219 DYVFCTFN------TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEEEESSC------HHHHHHHHHHHEEEEEEEEES
T ss_pred             cEEEECCC------chHHHHHHHHHhccCCEEEEE
Confidence            98887432      245678899999999998754

>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}

Probab=92.83  E-value=0.026  Score=43.60  Aligned_cols=30  Identities=27%  Similarity=0.515  Sum_probs=25.9

Q ss_pred             ccccCceeeCCCCccccCCCCeeeeecccC
Q 021975           82 AIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (304)
Q Consensus        82 ~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (304)
                      .+.++.+.|+.||+.|++++|+++++.+..
T Consensus       104 ~v~eg~L~C~~cg~~YPI~dGIP~mL~~ea  133 (141)
T 2j6a_A          104 SIAEGEMKCRNCGHIYYIKNGIPNLLLPPH  133 (141)
T ss_dssp             EEEEEEEECTTTCCEEEEETTEESSCCCSS
T ss_pred             eccCCEEECCCCCCcccccCCccCcCCcHH
Confidence            355688999999999999999999997643

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=92.80  E-value=0.2  Score=44.66  Aligned_cols=97  Identities=18%  Similarity=0.231  Sum_probs=61.9

Q ss_pred             hcccCCCeEEEEcCC--ccHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-----C
Q 021975          162 FKSAQGGLLVDVSCG--SGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P  232 (304)
Q Consensus       162 l~~~~~~~vLDiGcG--~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p  232 (304)
                      ....++.+||-+|+|  .|.....+++.  +.  +|+++|.+++.++.+++.    +    ... ++...-.+.     .
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga--~Vi~~~~~~~~~~~~~~~----g----~~~-~~~~~~~~~~~~~~~  234 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA--TIIGVDVREEAVEAAKRA----G----ADY-VINASMQDPLAEIRR  234 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC--EEEEEESSHHHHHHHHHH----T----CSE-EEETTTSCHHHHHHH
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHHHHh----C----CCE-EecCCCccHHHHHHH
Confidence            345568899999998  45555555554  54  999999999888877652    1    111 221111111     0


Q ss_pred             CCC-CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 FAS-GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ~~~-~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ... +.+|+|+....      ....+++..+.|+++|+++....
T Consensus       235 ~~~~~~~d~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          235 ITESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             HTTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred             HhcCCCceEEEECCC------CHHHHHHHHHHHhcCCEEEEECC
Confidence            112 47999887542      13467888899999999887654

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=92.76  E-value=0.15  Score=44.67  Aligned_cols=71  Identities=14%  Similarity=0.018  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC----CCccce
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA----SGFVDA  240 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~----~~~fD~  240 (304)
                      ...+++|+-||.|.+...+.+.|.... ++++|+++.+++..+.+.        ++..++.+|+.++...    .+.+|+
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~--------~~~~~~~~DI~~i~~~~i~~~~~~Dl   86 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH--------QGKIMYVGDVRSVTQKHIQEWGPFDL   86 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT--------TTCEEEECCGGGCCHHHHHHTCCCSE
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC--------CCCceeCCChHHccHHHhcccCCcCE
Confidence            456899999999999999999886333 699999999888777653        3456788898776411    136899


Q ss_pred             EEec
Q 021975          241 VHAG  244 (304)
Q Consensus       241 V~~~  244 (304)
                      ++..
T Consensus        87 l~gg   90 (295)
T 2qrv_A           87 VIGG   90 (295)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9985

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=92.71  E-value=0.11  Score=46.29  Aligned_cols=70  Identities=16%  Similarity=0.163  Sum_probs=52.8

Q ss_pred             CeEEEEcCCccHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCccceEEe
Q 021975          168 GLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHA  243 (304)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~~  243 (304)
                      .+++|+-||.|.+...+.+.|.. ..+.++|+++.+++.-+.++        +...++.+|+.++.   ++...+|+++.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~--------~~~~~~~~DI~~~~~~~~~~~~~D~l~g   75 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF--------PETNLLNRNIQQLTPQVIKKWNVDTILM   75 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC--------CCCceeccccccCCHHHhccCCCCEEEe
Confidence            47999999999999999988742 36789999999988888764        33446778887654   22235899987


Q ss_pred             cc
Q 021975          244 GA  245 (304)
Q Consensus       244 ~~  245 (304)
                      ..
T Consensus        76 gp   77 (333)
T 4h0n_A           76 SP   77 (333)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=92.63  E-value=0.32  Score=43.19  Aligned_cols=97  Identities=16%  Similarity=0.093  Sum_probs=63.2

Q ss_pred             hhcccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------
Q 021975          161 YFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (304)
Q Consensus       161 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (304)
                      .....++.+||-+|+  |.|.....+++.. +.+|++++.+++..+.+++.    +    .. .++..+ .++.      
T Consensus       154 ~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g----a~-~v~~~~-~~~~~~v~~~  222 (342)
T 4eye_A          154 RGQLRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSV----G----AD-IVLPLE-EGWAKAVREA  222 (342)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH----T----CS-EEEESS-TTHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C----Cc-EEecCc-hhHHHHHHHH
Confidence            344567889999997  4577777777763 34999999999888877762    1    11 122222 2211      


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .....+|+|+..-.-       ..+....+.|+++|++++...
T Consensus       223 ~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          223 TGGAGVDMVVDPIGG-------PAFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             TTTSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC--
T ss_pred             hCCCCceEEEECCch-------hHHHHHHHhhcCCCEEEEEEc
Confidence            112369999875432       247888999999999987653

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=92.60  E-value=0.52  Score=41.43  Aligned_cols=98  Identities=11%  Similarity=0.115  Sum_probs=64.3

Q ss_pred             hcccCCCeEEEEcC--CccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------
Q 021975          162 FKSAQGGLLVDVSC--GSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (304)
Q Consensus       162 l~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (304)
                      ....++.+||-+|+  |.|.....+++. |.  +|+++|.+++.++.+++.    +    .. ..+...-.++.      
T Consensus       136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~~~----G----a~-~~~~~~~~~~~~~~~~~  204 (325)
T 3jyn_A          136 YQVKPGEIILFHAAAGGVGSLACQWAKALGA--KLIGTVSSPEKAAHAKAL----G----AW-ETIDYSHEDVAKRVLEL  204 (325)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHHH
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHc----C----CC-EEEeCCCccHHHHHHHH
Confidence            34567889999993  357777777765 54  999999999988888762    1    11 12221111110      


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .....+|+|+....-       ..+....+.|++||++++.....
T Consensus       205 ~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~~~  242 (325)
T 3jyn_A          205 TDGKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFGNAS  242 (325)
T ss_dssp             TTTCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECCCTT
T ss_pred             hCCCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEecCC
Confidence            123469998875432       35778899999999998876543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=92.46  E-value=0.8  Score=40.97  Aligned_cols=97  Identities=13%  Similarity=0.089  Sum_probs=63.6

Q ss_pred             hcccCCCeEEEEc--CCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC
Q 021975          162 FKSAQGGLLVDVS--CGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA  234 (304)
Q Consensus       162 l~~~~~~~vLDiG--cG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~  234 (304)
                      ....++.+||-+|  .|.|.....+++.. +.+|++++.+++.++.+++.    +    .. .++..+-.++.     ..
T Consensus       159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~----G----a~-~~~~~~~~~~~~~~~~~~  228 (362)
T 2c0c_A          159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSL----G----CD-RPINYKTEPVGTVLKQEY  228 (362)
T ss_dssp             TCCCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----CS-EEEETTTSCHHHHHHHHC
T ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHc----C----Cc-EEEecCChhHHHHHHHhc
Confidence            3456788999999  34678777777763 34999999999888877651    1    11 12221111110     01


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ...+|+|+..-.     .  ..++.+.+.|+++|++++...
T Consensus       229 ~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          229 PEGVDVVYESVG-----G--AMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             TTCEEEEEECSC-----T--HHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCCEEEECCC-----H--HHHHHHHHHHhcCCEEEEEeC
Confidence            246899887543     2  468889999999999887654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=92.43  E-value=1.4  Score=38.80  Aligned_cols=102  Identities=16%  Similarity=0.142  Sum_probs=64.0

Q ss_pred             hhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------C
Q 021975          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------F  233 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~  233 (304)
                      .....++.+||-+|+|. |.+...+++......++++|.+++-++.+++.    |    .. ..+...-.+.+      -
T Consensus       155 ~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l----G----a~-~~i~~~~~~~~~~~~~~~  225 (346)
T 4a2c_A          155 LAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF----G----AM-QTFNSSEMSAPQMQSVLR  225 (346)
T ss_dssp             HTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T----CS-EEEETTTSCHHHHHHHHG
T ss_pred             HhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc----C----Ce-EEEeCCCCCHHHHHHhhc
Confidence            34456788999999986 55666666664344678999999988888762    1    22 22222111111      1


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ....+|+|+..-     .. ...++...++|++||.+++.....
T Consensus       226 ~~~g~d~v~d~~-----G~-~~~~~~~~~~l~~~G~~v~~g~~~  263 (346)
T 4a2c_A          226 ELRFNQLILETA-----GV-PQTVELAVEIAGPHAQLALVGTLH  263 (346)
T ss_dssp             GGCSSEEEEECS-----CS-HHHHHHHHHHCCTTCEEEECCCCS
T ss_pred             ccCCcccccccc-----cc-cchhhhhhheecCCeEEEEEeccC
Confidence            123567776532     22 346888899999999998766443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.32  E-value=1.8  Score=32.76  Aligned_cols=92  Identities=11%  Similarity=0.088  Sum_probs=60.3

Q ss_pred             CCeEEEEcCCc-cHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----CCCCccce
Q 021975          167 GGLLVDVSCGS-GLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA  240 (304)
Q Consensus       167 ~~~vLDiGcG~-G~~-~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~  240 (304)
                      ..+|+=+|+|. |.. ...|.+.+.  +|+++|.+++.++.+++          .++.++.+|..+..    ..-..+|+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~~~~----------~g~~~i~gd~~~~~~l~~a~i~~ad~   74 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI--PLVVIETSRTRVDELRE----------RGVRAVLGNAANEEIMQLAHLECAKW   74 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHH----------TTCEEEESCTTSHHHHHHTTGGGCSE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHH----------cCCCEEECCCCCHHHHHhcCcccCCE
Confidence            35788999975 443 344445565  99999999998887765          45778889986532    11246788


Q ss_pred             EEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEe
Q 021975          241 VHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       241 V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      |+...     ++..  ..+....+.+.|+..++....
T Consensus        75 vi~~~-----~~~~~n~~~~~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           75 LILTI-----PNGYEAGEIVASARAKNPDIEIIARAH  106 (140)
T ss_dssp             EEECC-----SCHHHHHHHHHHHHHHCSSSEEEEEES
T ss_pred             EEEEC-----CChHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            77642     3333  234456677788887666553

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=92.23  E-value=0.023  Score=38.99  Aligned_cols=39  Identities=26%  Similarity=0.550  Sum_probs=22.0

Q ss_pred             CeeeccCCCccccccC-----CCCccc-----------cccccCceeeCCCCccc
Q 021975           59 DLFSCPICYEPLIRKG-----PTGLTL-----------GAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~-----~~~~~~-----------~~i~~~~l~C~~C~~~~   97 (304)
                      ++-.||+||+++....     ..-.+.           ..+.+-.+.||.||-.|
T Consensus         7 ~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEF   61 (95)
T 2k5c_A            7 HMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEF   61 (95)
T ss_dssp             -CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEE
T ss_pred             ccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHH
Confidence            4678999999863311     011111           11222468999999765

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=92.16  E-value=0.46  Score=41.67  Aligned_cols=92  Identities=14%  Similarity=0.119  Sum_probs=60.7

Q ss_pred             eEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CCCCCCccceEEecc
Q 021975          169 LLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHAGA  245 (304)
Q Consensus       169 ~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~~~~  245 (304)
                      +||-+|+  |.|.....+++.. +.+|++++.+++..+.+++.    +    ....+-..+... ..+..+.+|+|+-.-
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~~vi~~~~~~~~~~~~~~~~d~v~d~~  219 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSL----G----ANRILSRDEFAESRPLEKQLWAGAIDTV  219 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHH----T----CSEEEEGGGSSCCCSSCCCCEEEEEESS
T ss_pred             eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C----CCEEEecCCHHHHHhhcCCCccEEEECC
Confidence            4999997  4588888888774 34999999999988888763    1    111121122111 112245789877542


Q ss_pred             hhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                           ..  ..+.+..+.|+++|+++.....
T Consensus       220 -----g~--~~~~~~~~~l~~~G~iv~~G~~  243 (324)
T 3nx4_A          220 -----GD--KVLAKVLAQMNYGGCVAACGLA  243 (324)
T ss_dssp             -----CH--HHHHHHHHTEEEEEEEEECCCT
T ss_pred             -----Cc--HHHHHHHHHHhcCCEEEEEecC
Confidence                 22  2789999999999999876543

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=92.07  E-value=0.71  Score=40.99  Aligned_cols=98  Identities=12%  Similarity=0.037  Sum_probs=63.2

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------CC
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA  234 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~  234 (304)
                      ... ++.+||-+|+|. |.....+++.....+|+++|.+++.++.+++.    +    .. .++..+-.++.      ..
T Consensus       164 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----G----a~-~~~~~~~~~~~~~v~~~~~  233 (348)
T 2d8a_A          164 GPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----G----AD-YVINPFEEDVVKEVMDITD  233 (348)
T ss_dssp             SCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----T----CS-EEECTTTSCHHHHHHHHTT
T ss_pred             cCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C----CC-EEECCCCcCHHHHHHHHcC
Confidence            344 788999999964 77777777764223899999999888887752    1    11 12211111110      11


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ...+|+|+..-.     . ...++.+.+.|+++|+++....
T Consensus       234 g~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          234 GNGVDVFLEFSG-----A-PKALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             TSCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEcc
Confidence            236899886532     2 3467889999999999887654

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.03  E-value=0.34  Score=42.66  Aligned_cols=94  Identities=12%  Similarity=0.122  Sum_probs=61.5

Q ss_pred             hcccCCCeEEEEcC--CccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------
Q 021975          162 FKSAQGGLLVDVSC--GSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (304)
Q Consensus       162 l~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (304)
                      ....++.+||-.|+  |.|.....+++. |.  +|+++|.+++.++.+++.    +    ... .+  |..+..      
T Consensus       136 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~--~V~~~~~~~~~~~~~~~~----g----~~~-~~--~~~~~~~~~~~~  202 (327)
T 1qor_A          136 YEIKPDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKA----G----AWQ-VI--NYREEDLVERLK  202 (327)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHH----T----CSE-EE--ETTTSCHHHHHH
T ss_pred             hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHc----C----CCE-EE--ECCCccHHHHHH
Confidence            34556889999994  456666666554 54  999999999888877652    1    111 22  221111      


Q ss_pred             --CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                        .....+|+|+....       ...++.+.+.|+++|+++....
T Consensus       203 ~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          203 EITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             HHTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred             HHhCCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence              11236899887643       2357888999999999887654

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=92.03  E-value=0.99  Score=39.92  Aligned_cols=94  Identities=16%  Similarity=0.094  Sum_probs=62.8

Q ss_pred             cccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--------
Q 021975          163 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------  232 (304)
Q Consensus       163 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------  232 (304)
                      ...++.+||-+|+  |.|.....+++.. +.+|+++|.+++.++.+++.    +    .. .++  |..+..        
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~----g----a~-~~~--d~~~~~~~~~~~~~  230 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKAL----G----AD-ETV--NYTHPDWPKEVRRL  230 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH----T----CS-EEE--ETTSTTHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc----C----CC-EEE--cCCcccHHHHHHHH
Confidence            3456889999998  5677777777653 24999999999888887652    1    11 122  222111        


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .....+|+|+.... .      ..++.+.+.|+++|+++....
T Consensus       231 ~~~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          231 TGGKGADKVVDHTG-A------LYFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             TTTTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEESSC
T ss_pred             hCCCCceEEEECCC-H------HHHHHHHHhhccCCEEEEEec
Confidence            11246999987653 1      247788899999999887654

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=91.74  E-value=0.19  Score=45.12  Aligned_cols=98  Identities=12%  Similarity=0.148  Sum_probs=62.0

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC-CC--CCCCC
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RL--PFASG  236 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~l--p~~~~  236 (304)
                      ....++.+||-+|+|. |.+...+++. +.  +|+++|.+++.++.+++.    +    .. .++...-. +.  ... +
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga--~Vi~~~~~~~~~~~~~~l----G----a~-~v~~~~~~~~~~~~~~-~  242 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKM----G----AD-HYIATLEEGDWGEKYF-D  242 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHH----T----CS-EEEEGGGTSCHHHHSC-S
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHc----C----CC-EEEcCcCchHHHHHhh-c
Confidence            3456788999999864 7777777765 54  899999999888888762    1    11 12221111 11  011 4


Q ss_pred             ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .+|+|+..-.-.    ....+++..+.|++||+++....
T Consensus       243 ~~D~vid~~g~~----~~~~~~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          243 TFDLIVVCASSL----TDIDFNIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             CEEEEEECCSCS----TTCCTTTGGGGEEEEEEEEECCC
T ss_pred             CCCEEEECCCCC----cHHHHHHHHHHhcCCCEEEEecC
Confidence            699998754320    01235667789999999887654

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=91.69  E-value=0.37  Score=44.42  Aligned_cols=46  Identities=11%  Similarity=0.244  Sum_probs=35.6

Q ss_pred             CCeEEEEcCCccHHHHHHHHh----CC-CCeEEEEeCCHHHHHHHHHHHHh
Q 021975          167 GGLLVDVSCGSGLFSRKFAKS----GT-YSGVVALDFSENMLRQCYDFIKQ  212 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~----~~-~~~v~giD~s~~~~~~a~~~~~~  212 (304)
                      ...|+|+|.|.|.+...+.+.    .+ ..+++.||+|+...+.-++.+..
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            468999999999987666543    21 24899999999988877777764

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=91.68  E-value=0.68  Score=41.47  Aligned_cols=88  Identities=14%  Similarity=0.092  Sum_probs=57.5

Q ss_pred             CCeEEEEcCCc-cHHHHHHHHh-CCCCeEEEEeCCH---HHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC------C
Q 021975          167 GGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSE---NMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA------S  235 (304)
Q Consensus       167 ~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~giD~s~---~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~------~  235 (304)
                      +.+||-+|+|. |.....+++. |.  +|+++|.++   +..+.+++.    +      ...+  | .+ .+.      .
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~~~~~----g------a~~v--~-~~-~~~~~~~~~~  244 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL--EVWMANRREPTEVEQTVIEET----K------TNYY--N-SS-NGYDKLKDSV  244 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC--EEEEEESSCCCHHHHHHHHHH----T------CEEE--E-CT-TCSHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCccchHHHHHHHHh----C------Ccee--c-hH-HHHHHHHHhC
Confidence            88999999853 5555666654 54  999999987   777776652    1      2222  2 22 211      1


Q ss_pred             CccceEEecchhccCCCHHHHH-HHHHHhcccCcEEEEEEeC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAV-AEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l-~~~~r~LkpgG~lvi~~~~  276 (304)
                      +.+|+|+..-..     + ..+ +...+.|+++|+++.....
T Consensus       245 ~~~d~vid~~g~-----~-~~~~~~~~~~l~~~G~iv~~g~~  280 (366)
T 2cdc_A          245 GKFDVIIDATGA-----D-VNILGNVIPLLGRNGVLGLFGFS  280 (366)
T ss_dssp             CCEEEEEECCCC-----C-THHHHHHGGGEEEEEEEEECSCC
T ss_pred             CCCCEEEECCCC-----h-HHHHHHHHHHHhcCCEEEEEecC
Confidence            468998875432     1 145 8889999999998876543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=91.54  E-value=1.4  Score=39.77  Aligned_cols=112  Identities=8%  Similarity=0.038  Sum_probs=72.1

Q ss_pred             HHHHHhhcc-cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          156 KMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       156 ~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      +++.+.+.. ..+.+||.++.+.|.++..++...    ++.+.-|--..+..+.+++.+++ ....+.+... ...+   
T Consensus        27 ~~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~~----~~~~~ds~~~~~~~~~n~~~~~~-~~~~~~~~~~-~~~~---   97 (375)
T 4dcm_A           27 EYLLQQLDDTEIRGPVLILNDAFGALSCALAEHK----PYSIGDSYISELATRENLRLNGI-DESSVKFLDS-TADY---   97 (375)
T ss_dssp             HHHHHTTTTCCCCSCEEEECCSSSHHHHHTGGGC----CEEEESCHHHHHHHHHHHHHTTC-CGGGSEEEET-TSCC---
T ss_pred             HHHHHhhhhccCCCCEEEECCCCCHHHHhhccCC----ceEEEhHHHHHHHHHHHHHHcCC-CccceEeccc-cccc---
Confidence            344444433 245689999999999998887653    34444366666677778887763 1223666543 2332   


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ...||+|+.... .+.......|+.+...|++|+.+++..-..
T Consensus        98 ~~~~~~v~~~lp-k~~~~l~~~L~~l~~~l~~~~~i~~~g~~~  139 (375)
T 4dcm_A           98 PQQPGVVLIKVP-KTLALLEQQLRALRKVVTSDTRIIAGAKAR  139 (375)
T ss_dssp             CSSCSEEEEECC-SCHHHHHHHHHHHHTTCCTTSEEEEEEEGG
T ss_pred             ccCCCEEEEEcC-CCHHHHHHHHHHHHhhCCCCCEEEEEeccc
Confidence            357999888542 222233457888999999999998776544

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=91.50  E-value=0.09  Score=37.47  Aligned_cols=26  Identities=27%  Similarity=0.713  Sum_probs=20.6

Q ss_pred             eeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ..||.|+.++...+           +.+.|..|+..|
T Consensus        33 ~~CP~Cq~eL~~~g-----------~~~hC~~C~~~f   58 (101)
T 2jne_A           33 LHCPQCQHVLDQDN-----------GHARCRSCGEFI   58 (101)
T ss_dssp             CBCSSSCSBEEEET-----------TEEEETTTCCEE
T ss_pred             ccCccCCCcceecC-----------CEEECccccchh
Confidence            89999999998754           566788887755

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=91.41  E-value=0.27  Score=43.74  Aligned_cols=96  Identities=8%  Similarity=0.117  Sum_probs=62.5

Q ss_pred             cccCCCeEEEEcCCc-cHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc----cC-CCCCCCC
Q 021975          163 KSAQGGLLVDVSCGS-GLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA----DV-CRLPFAS  235 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~----d~-~~lp~~~  235 (304)
                      .. ++.+||-+|+|. |.+...+++.. ++.+|+++|.+++..+.+++.    +    .. .++..    +. ..+. ..
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~~-~g  236 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----G----AD-YVSEMKDAESLINKLT-DG  236 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----T----CS-EEECHHHHHHHHHHHH-TT
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----C----CC-EEeccccchHHHHHhh-cC
Confidence            44 688999999975 67777777652 134899999999988888762    1    11 11211    10 1111 12


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ..+|+|+..-.     . ...++...+.|+++|+++....
T Consensus       237 ~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          237 LGASIAIDLVG-----T-EETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             CCEEEEEESSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCccEEEECCC-----C-hHHHHHHHHHhhcCCEEEEeCC
Confidence            36999987532     2 3368889999999999887654

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1

Probab=91.36  E-value=0.084  Score=34.08  Aligned_cols=40  Identities=20%  Similarity=0.311  Sum_probs=22.9

Q ss_pred             CeeeccCCCccccc-cCCCCccccccccCceeeCCCCcccc
Q 021975           59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        59 ~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      ....||.|+..-.. ...+.-..++.+.-.++|.+||+.+.
T Consensus        14 ~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~   54 (57)
T 1qyp_A           14 TKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR   54 (57)
T ss_dssp             EECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred             eEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence            36789999984221 00000012233345789999998763

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=91.24  E-value=3.5  Score=34.88  Aligned_cols=70  Identities=13%  Similarity=0.082  Sum_probs=50.1

Q ss_pred             CeEEEEcCCccHHHHHHHH----hCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          168 GLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      .+||=.|+  |..+..+.+    .+.  +|++++-++........          .++.++.+|+.++.  -..+|+|+.
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~----------~~~~~~~~D~~d~~--~~~~d~vi~   69 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGW--RIIGTSRNPDQMEAIRA----------SGAEPLLWPGEEPS--LDGVTHLLI   69 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTC--EEEEEESCGGGHHHHHH----------TTEEEEESSSSCCC--CTTCCEEEE
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCC--EEEEEEcChhhhhhHhh----------CCCeEEEecccccc--cCCCCEEEE
Confidence            58999995  776665554    455  99999998865544433          56899999998866  457899998


Q ss_pred             cchhccCCCH
Q 021975          244 GAALHCWPSP  253 (304)
Q Consensus       244 ~~vl~h~~d~  253 (304)
                      ........++
T Consensus        70 ~a~~~~~~~~   79 (286)
T 3ius_A           70 STAPDSGGDP   79 (286)
T ss_dssp             CCCCBTTBCH
T ss_pred             CCCccccccH
Confidence            7665544444

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8

Probab=91.10  E-value=0.17  Score=32.39  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=24.6

Q ss_pred             cCCcCCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           54 LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        54 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ..+...+..||.||+.+.....         ...+.|..|+..+
T Consensus        12 gki~~~~~fCPkCG~~~~ma~~---------~dr~~C~kCgyt~   46 (55)
T 2k4x_A           12 GKLVRKHRFCPRCGPGVFLAEH---------ADRYSCGRCGYTE   46 (55)
T ss_dssp             CCCCCSSCCCTTTTTTCCCEEC---------SSEEECTTTCCCE
T ss_pred             CEEEEccccCcCCCCceeEecc---------CCEEECCCCCCEE
Confidence            4555567889999996643211         1589999998775

>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=91.04  E-value=0.12  Score=32.47  Aligned_cols=28  Identities=25%  Similarity=0.356  Sum_probs=21.9

Q ss_pred             cCCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ..+...||.|+..+..             +.+.|..||+..
T Consensus        11 ~~~k~iCpkC~a~~~~-------------gaw~CrKCG~~~   38 (51)
T 3j21_g           11 IFKKYVCLRCGATNPW-------------GAKKCRKCGYKR   38 (51)
T ss_dssp             SSSEEECTTTCCEECT-------------TCSSCSSSSSCC
T ss_pred             HhCCccCCCCCCcCCC-------------CceecCCCCCcc
Confidence            3466889999998533             789999999863

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=90.99  E-value=2  Score=37.54  Aligned_cols=79  Identities=15%  Similarity=0.221  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (304)
                      .+++||-.|++.|-   +...|++.|.  +|++++.++..++.+.+.+...+  ...++.++.+|+.+..     +.   
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~   82 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEG--SGPEVMGVQLDVASREGFKMAADEVE   82 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            46789999987663   4566666676  99999999988887777666544  2247899999997742     00   


Q ss_pred             --CCccceEEecchhc
Q 021975          235 --SGFVDAVHAGAALH  248 (304)
Q Consensus       235 --~~~fD~V~~~~vl~  248 (304)
                        -+.+|+++.+..+.
T Consensus        83 ~~~g~id~lv~nAg~~   98 (319)
T 3ioy_A           83 ARFGPVSILCNNAGVN   98 (319)
T ss_dssp             HHTCCEEEEEECCCCC
T ss_pred             HhCCCCCEEEECCCcC
Confidence              14689999876643

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=90.99  E-value=1.3  Score=39.31  Aligned_cols=97  Identities=9%  Similarity=-0.032  Sum_probs=62.5

Q ss_pred             hhcccCC--CeEEEEcC--CccHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---
Q 021975          161 YFKSAQG--GLLVDVSC--GSGLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (304)
Q Consensus       161 ~l~~~~~--~~vLDiGc--G~G~~~~~l~~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---  232 (304)
                      .....++  .+||-.|+  |.|.....+++.. +. +|+++|.+++.++.+++.+   +    .. ..+  |..+..   
T Consensus       153 ~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~~---g----~~-~~~--d~~~~~~~~  221 (357)
T 2zb4_A          153 KGHITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSEL---G----FD-AAI--NYKKDNVAE  221 (357)
T ss_dssp             HSCCCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTS---C----CS-EEE--ETTTSCHHH
T ss_pred             hcCCCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHc---C----Cc-eEE--ecCchHHHH
Confidence            3445567  89999998  4566666666654 34 8999999988777665422   2    11 122  222211   


Q ss_pred             ----CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 ----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                          ...+.+|+|+....       ...++...+.|++||++++...
T Consensus       222 ~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          222 QLRESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             HHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             HHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEECC
Confidence                01126898887643       2568889999999999887654

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=90.90  E-value=2.6  Score=36.10  Aligned_cols=77  Identities=18%  Similarity=0.182  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-C----CC---
Q 021975          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P----FA---  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p----~~---  234 (304)
                      .+++||=.|++.|   .....|++.|.  +|++++.++...+.+.+.+...+   ..++.++.+|+.+. .    +.   
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl~~~~~~v~~~~~~~   85 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN---HENVVFHQLDVTDPIATMSSLADFI   85 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT---CCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CCceEEEEccCCCcHHHHHHHHHHH
Confidence            3668888887755   24555666666  99999999988777777666543   35799999999875 2    00   


Q ss_pred             ---CCccceEEecchh
Q 021975          235 ---SGFVDAVHAGAAL  247 (304)
Q Consensus       235 ---~~~fD~V~~~~vl  247 (304)
                         -+.+|+++.+..+
T Consensus        86 ~~~~g~iD~lv~nAg~  101 (311)
T 3o26_A           86 KTHFGKLDILVNNAGV  101 (311)
T ss_dssp             HHHHSSCCEEEECCCC
T ss_pred             HHhCCCCCEEEECCcc
Confidence               1368999987654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=90.84  E-value=0.71  Score=41.17  Aligned_cols=97  Identities=9%  Similarity=-0.010  Sum_probs=61.2

Q ss_pred             cccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------CC
Q 021975          163 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA  234 (304)
Q Consensus       163 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~  234 (304)
                      ...++.+||-.|+  |.|.....+++.. +.+|+++|.+++.++.+++.    +    ... .+..+-.+..      ..
T Consensus       159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g----~~~-~~~~~~~~~~~~~~~~~~  228 (354)
T 2j8z_A          159 NVQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKL----G----AAA-GFNYKKEDFSEATLKFTK  228 (354)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH----T----CSE-EEETTTSCHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C----CcE-EEecCChHHHHHHHHHhc
Confidence            4456889999984  4567666666653 34999999999888887542    1    111 2211111100      11


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ...+|+|+....-     +  .+.+..+.|++||++++....
T Consensus       229 ~~~~d~vi~~~G~-----~--~~~~~~~~l~~~G~iv~~G~~  263 (354)
T 2j8z_A          229 GAGVNLILDCIGG-----S--YWEKNVNCLALDGRWVLYGLM  263 (354)
T ss_dssp             TSCEEEEEESSCG-----G--GHHHHHHHEEEEEEEEECCCT
T ss_pred             CCCceEEEECCCc-----h--HHHHHHHhccCCCEEEEEecc
Confidence            2468998875432     1  477888999999998876543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=90.57  E-value=2.1  Score=32.24  Aligned_cols=90  Identities=17%  Similarity=0.132  Sum_probs=55.3

Q ss_pred             CCeEEEEcCCc-cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----CCCCccce
Q 021975          167 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA  240 (304)
Q Consensus       167 ~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~  240 (304)
                      ..+|+=+|+|. |. +...|.+.+.  +|+++|.+++.++.+++          ..+.++.+|..+..    ..-..+|+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~--~V~~id~~~~~~~~~~~----------~~~~~~~gd~~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK--KVLAVDKSKEKIELLED----------EGFDAVIADPTDESFYRSLDLEGVSA   73 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHH----------TTCEEEECCTTCHHHHHHSCCTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHH----------CCCcEEECCCCCHHHHHhCCcccCCE
Confidence            35789999864 33 3344445565  99999999988877765          34678888886632    12246788


Q ss_pred             EEecchhccCCCHH--HHHHHHHHhcccCcEEEEEE
Q 021975          241 VHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       241 V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~  274 (304)
                      |+...     ++..  ..+....+.+. ...++...
T Consensus        74 vi~~~-----~~~~~n~~~~~~a~~~~-~~~iia~~  103 (141)
T 3llv_A           74 VLITG-----SDDEFNLKILKALRSVS-DVYAIVRV  103 (141)
T ss_dssp             EEECC-----SCHHHHHHHHHHHHHHC-CCCEEEEE
T ss_pred             EEEec-----CCHHHHHHHHHHHHHhC-CceEEEEE
Confidence            87643     2332  23444455555 45555444

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=90.35  E-value=0.74  Score=40.56  Aligned_cols=95  Identities=14%  Similarity=0.121  Sum_probs=62.0

Q ss_pred             cccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--------
Q 021975          163 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------  232 (304)
Q Consensus       163 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------  232 (304)
                      ...++.+||-.|+  |.|.....+++.. +.+|+++|.+++.++.+++.    +    ... .+  |..+..        
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~----g----~~~-~~--d~~~~~~~~~i~~~  209 (333)
T 1wly_A          142 KVKPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKL----G----CHH-TI--NYSTQDFAEVVREI  209 (333)
T ss_dssp             CCCTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH----T----CSE-EE--ETTTSCHHHHHHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C----CCE-EE--ECCCHHHHHHHHHH
Confidence            4456889999995  5677766666653 24999999999888777652    1    111 22  222211        


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .....+|+|+....     .  ..++...+.|+++|+++.....
T Consensus       210 ~~~~~~d~vi~~~g-----~--~~~~~~~~~l~~~G~iv~~g~~  246 (333)
T 1wly_A          210 TGGKGVDVVYDSIG-----K--DTLQKSLDCLRPRGMCAAYGHA  246 (333)
T ss_dssp             HTTCCEEEEEECSC-----T--TTHHHHHHTEEEEEEEEECCCT
T ss_pred             hCCCCCeEEEECCc-----H--HHHHHHHHhhccCCEEEEEecC
Confidence            11236899887543     1  3578889999999998876543

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=90.35  E-value=0.33  Score=43.38  Aligned_cols=98  Identities=16%  Similarity=0.134  Sum_probs=58.8

Q ss_pred             ccc-CCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc-cCCCCCCCCCccc
Q 021975          163 KSA-QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVD  239 (304)
Q Consensus       163 ~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD  239 (304)
                      ... ++.+||-+|+|. |.+...+++.. +.+|+++|.+++..+.+++.+   +   ...  ++.. +...+.-..+.+|
T Consensus       176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~l---G---a~~--vi~~~~~~~~~~~~~g~D  246 (357)
T 2cf5_A          176 GLKQPGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDL---G---ADD--YVIGSDQAKMSELADSLD  246 (357)
T ss_dssp             STTSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTS---C---CSC--EEETTCHHHHHHSTTTEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHc---C---Cce--eeccccHHHHHHhcCCCC
Confidence            344 688999999874 66777777652 239999999987776665322   1   111  1211 1000000013689


Q ss_pred             eEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +|+-.-.-.      ..++...+.|+++|+++....
T Consensus       247 ~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          247 YVIDTVPVH------HALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             EEEECCCSC------CCSHHHHTTEEEEEEEEECSC
T ss_pred             EEEECCCCh------HHHHHHHHHhccCCEEEEeCC
Confidence            888643211      125667889999999887654

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=90.35  E-value=0.17  Score=34.16  Aligned_cols=31  Identities=23%  Similarity=0.682  Sum_probs=22.4

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      ....||.|+..-.....         .+.|+|..|+..+.
T Consensus        25 ~ky~C~fCgk~~vkR~a---------~GIW~C~~C~~~~A   55 (72)
T 3jyw_9           25 ARYDCSFCGKKTVKRGA---------AGIWTCSCCKKTVA   55 (72)
T ss_dssp             SCBCCSSCCSSCBSBCS---------SSCBCCSSSCCCCC
T ss_pred             cCccCCCCCCceeEecC---------CCeEECCCCCCEEe
Confidence            45889999986433221         27999999998763

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=90.34  E-value=0.66  Score=41.81  Aligned_cols=97  Identities=24%  Similarity=0.263  Sum_probs=62.9

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc---CCC----C-C-C
Q 021975          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD---VCR----L-P-F  233 (304)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d---~~~----l-p-~  233 (304)
                      ..++.+||-+|+|. |.++..+++.....+|+++|.+++.++.+++.    +    .. .++..+   -.+    + . .
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~~v~~~~  263 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----G----AD-LTLNRRETSVEERRKAIMDIT  263 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----T----CS-EEEETTTSCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc----C----Cc-EEEeccccCcchHHHHHHHHh
Confidence            55688999999774 77777777764114999999999988888751    1    11 122211   000    0 0 1


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ....+|+|+..-.     . ...+++..+.|+++|+++....
T Consensus       264 ~g~g~Dvvid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          264 HGRGADFILEATG-----D-SRALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             TTSCEEEEEECSS-----C-TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCCcEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence            1236999886532     1 1357888999999999887654

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=90.24  E-value=0.95  Score=40.30  Aligned_cols=98  Identities=14%  Similarity=0.041  Sum_probs=63.0

Q ss_pred             hcccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC
Q 021975          162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA  234 (304)
Q Consensus       162 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~  234 (304)
                      ....++.+||-+|+  |.|.....+++.. +.+|+++|.+++.++.+++.    +    .. ..+..+-.+..     ..
T Consensus       163 ~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~-~~~~~~~~~~~~~~~~~~  232 (353)
T 4dup_A          163 AGLTEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERL----G----AK-RGINYRSEDFAAVIKAET  232 (353)
T ss_dssp             TCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHHHH
T ss_pred             cCCCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C----CC-EEEeCCchHHHHHHHHHh
Confidence            34567889999953  3577777777763 34999999999988888762    1    11 12221111110     00


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .+.+|+|+....-       ..+....+.|+++|++++....
T Consensus       233 ~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~~  267 (353)
T 4dup_A          233 GQGVDIILDMIGA-------AYFERNIASLAKDGCLSIIAFL  267 (353)
T ss_dssp             SSCEEEEEESCCG-------GGHHHHHHTEEEEEEEEECCCT
T ss_pred             CCCceEEEECCCH-------HHHHHHHHHhccCCEEEEEEec
Confidence            2468998875432       2578888999999998876543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.21  E-value=1.9  Score=36.76  Aligned_cols=103  Identities=20%  Similarity=0.219  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCC------------HHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS------------ENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s------------~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.+|.+            ...++.+...+...+    .++.++.+|+.+
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~   82 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG----RKAYTAEVDVRD   82 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT----SCEEEEECCTTC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhcC----CceEEEEccCCC
Confidence            46789988887652   4556666776  99999987            666666665555543    678999999977


Q ss_pred             CC-----CC-----CCccceEEecchhccCC---CHH--------------HHHHHHHHhcccCcEEEEEE
Q 021975          231 LP-----FA-----SGFVDAVHAGAALHCWP---SPS--------------NAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       231 lp-----~~-----~~~fD~V~~~~vl~h~~---d~~--------------~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ..     +.     -+..|+++.+..+....   +.+              .+++.+.+.++.+|.++...
T Consensus        83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           83 RAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence            42     10     13689999876543321   111              23566667777888877654

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=90.16  E-value=0.26  Score=43.03  Aligned_cols=56  Identities=21%  Similarity=0.200  Sum_probs=38.9

Q ss_pred             CCeEEEEccCCC-CC-CCCCccceEEecchhccCC--------------------CHHHHHHHHHHhcccCcEEEEEE
Q 021975          219 SNLALVRADVCR-LP-FASGFVDAVHAGAALHCWP--------------------SPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       219 ~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~--------------------d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      .++.++++|..+ +. +++++||+|++.--.....                    ....+++++.++|||||.+++..
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~   97 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV   97 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            456889999865 22 4578999999964322110                    12346789999999999998764

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=90.15  E-value=0.31  Score=47.77  Aligned_cols=106  Identities=20%  Similarity=0.212  Sum_probs=64.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhC-------C-----CCeEEEEeC---CHHHHHHHHH-----------HHHhcCc----
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSG-------T-----YSGVVALDF---SENMLRQCYD-----------FIKQDNT----  215 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~-------~-----~~~v~giD~---s~~~~~~a~~-----------~~~~~~~----  215 (304)
                      +.-+|+|+|.|+|.....+.+..       |     ...++.+|.   +.+.+..+..           .++....    
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            34689999999999766554421       1     146899998   5554443321           1221110    


Q ss_pred             ----c---CCCCeEEEEccCCC-CC-CC---CCccceEEecchhccCCCH----HHHHHHHHHhcccCcEEEE
Q 021975          216 ----I---LTSNLALVRADVCR-LP-FA---SGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVG  272 (304)
Q Consensus       216 ----~---~~~~i~~~~~d~~~-lp-~~---~~~fD~V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~lvi  272 (304)
                          .   ....++++.+|+.+ ++ +.   +..+|+++....--. .+|    ..++..+.++++|||.+..
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~-~np~~w~~~~~~~l~~~~~~g~~~~t  209 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPA-KNPDMWNEQLFNAMARMTRPGGTFST  209 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCC-CChhhhhHHHHHHHHHHhCCCCEEEe
Confidence                0   01256777888743 22 21   467999998542111 122    5789999999999998664

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=90.11  E-value=1.6  Score=37.77  Aligned_cols=78  Identities=26%  Similarity=0.264  Sum_probs=56.9

Q ss_pred             cCCCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC--
Q 021975          165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (304)
Q Consensus       165 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (304)
                      ..+++||-.|++.|   .+...|++.|.  +|+.++.++..++.+.+.++..+    .++.++.+|+.+..     +.  
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~~~~~~  102 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQG----FDAHGVVCDVRHLDEMVRLADEA  102 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC----CceEEEEccCCCHHHHHHHHHHH
Confidence            35678999998766   24566666676  99999999998888877776544    67899999997742     00  


Q ss_pred             ---CCccceEEecchhc
Q 021975          235 ---SGFVDAVHAGAALH  248 (304)
Q Consensus       235 ---~~~fD~V~~~~vl~  248 (304)
                         -+.+|+++.+..+.
T Consensus       103 ~~~~g~id~lvnnAg~~  119 (301)
T 3tjr_A          103 FRLLGGVDVVFSNAGIV  119 (301)
T ss_dssp             HHHHSSCSEEEECCCCC
T ss_pred             HHhCCCCCEEEECCCcC
Confidence               13689999876543

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=90.08  E-value=0.15  Score=35.36  Aligned_cols=14  Identities=43%  Similarity=1.144  Sum_probs=9.8

Q ss_pred             eeccCCCccccccC
Q 021975           61 FSCPICYEPLIRKG   74 (304)
Q Consensus        61 l~CP~C~~~l~~~~   74 (304)
                      ..||.|++++....
T Consensus         3 ~~CP~C~~~l~~~~   16 (81)
T 2jrp_A            3 ITCPVCHHALERNG   16 (81)
T ss_dssp             CCCSSSCSCCEECS
T ss_pred             CCCCCCCCccccCC
Confidence            56888888776643

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.06  E-value=3.1  Score=32.82  Aligned_cols=92  Identities=13%  Similarity=0.150  Sum_probs=57.1

Q ss_pred             CCeEEEEcCCc-cH-HHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----C-CCCcc
Q 021975          167 GGLLVDVSCGS-GL-FSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----F-ASGFV  238 (304)
Q Consensus       167 ~~~vLDiGcG~-G~-~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~-~~~~f  238 (304)
                      +.+|+=+|+|. |. ....|.+. +.  +|+++|.+++.++.+++          .++.++.+|..+..    . .-..+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~--~V~vid~~~~~~~~~~~----------~g~~~~~gd~~~~~~l~~~~~~~~a  106 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK--ISLGIEIREEAAQQHRS----------EGRNVISGDATDPDFWERILDTGHV  106 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS--CEEEEESCHHHHHHHHH----------TTCCEEECCTTCHHHHHTBCSCCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC--eEEEEECCHHHHHHHHH----------CCCCEEEcCCCCHHHHHhccCCCCC
Confidence            55799999874 43 34455556 65  89999999988777654          24556777765421    1 13458


Q ss_pred             ceEEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEe
Q 021975          239 DAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      |+|+..-     ++..  ..+-...+.+.|++.++....
T Consensus       107 d~vi~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~~~  140 (183)
T 3c85_A          107 KLVLLAM-----PHHQGNQTALEQLQRRNYKGQIAAIAE  140 (183)
T ss_dssp             CEEEECC-----SSHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred             CEEEEeC-----CChHHHHHHHHHHHHHCCCCEEEEEEC
Confidence            8888742     2332  223345566677777776543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=89.85  E-value=0.52  Score=41.79  Aligned_cols=96  Identities=15%  Similarity=0.066  Sum_probs=61.4

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA  234 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~  234 (304)
                      ... ++.+||-+|+|. |.....+++.. +. +|+++|.+++.++.+++.  .        -.++...-.++.     ..
T Consensus       161 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l--a--------~~v~~~~~~~~~~~~~~~~  228 (343)
T 2dq4_A          161 SGV-SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY--A--------DRLVNPLEEDLLEVVRRVT  228 (343)
T ss_dssp             TCC-TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT--C--------SEEECTTTSCHHHHHHHHH
T ss_pred             CCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh--H--------HhccCcCccCHHHHHHHhc
Confidence            345 788999999864 77777777764 34 899999998877766541  1        112211111110     00


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ...+|+|+..-.     . ...+++..+.|+++|+++....
T Consensus       229 ~~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          229 GSGVEVLLEFSG-----N-EAAIHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             SSCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence            236898886432     2 2457889999999999887654

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=89.81  E-value=3.1  Score=35.84  Aligned_cols=103  Identities=12%  Similarity=0.169  Sum_probs=67.3

Q ss_pred             CCCeEEEEcCCc----cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC-
Q 021975          166 QGGLLVDVSCGS----GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-  234 (304)
Q Consensus       166 ~~~~vLDiGcG~----G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-  234 (304)
                      .++++|-.|++.    |. ....|++.|.  +|+.++.++...+.+.+..+..     .++.++.+|+.+..     +. 
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~  102 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEEL-----GAFVAGHCDVADAASIDAVFET  102 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHH-----TCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc-----CCceEEECCCCCHHHHHHHHHH
Confidence            467899999763    32 5566777776  8999999876555555544433     35789999997742     00 


Q ss_pred             ----CCccceEEecchhcc----C-----CCHH--------------HHHHHHHHhcccCcEEEEEEe
Q 021975          235 ----SGFVDAVHAGAALHC----W-----PSPS--------------NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 ----~~~fD~V~~~~vl~h----~-----~d~~--------------~~l~~~~r~LkpgG~lvi~~~  275 (304)
                          -+.+|+++.+..+..    .     .+.+              .+++.+.+.++.+|.++....
T Consensus       103 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          103 LEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             HHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             HHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence                146899998765432    0     1111              245667778888888887664

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=89.70  E-value=0.45  Score=41.36  Aligned_cols=94  Identities=17%  Similarity=0.068  Sum_probs=59.2

Q ss_pred             ccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC-CCCCCCCCccce
Q 021975          164 SAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDA  240 (304)
Q Consensus       164 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~  240 (304)
                      ..++.+||-+|+  |.|.....+++.. +.+|+++|.+++..+.+++.    +    .. .++..+- .++.-.-+.+|+
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g----a~-~~~~~~~~~~~~~~~~~~d~  192 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL----G----AE-EAATYAEVPERAKAWGGLDL  192 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT----T----CS-EEEEGGGHHHHHHHTTSEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc----C----CC-EEEECCcchhHHHHhcCceE
Confidence            456889999998  4577777777663 34999999998887777651    1    11 1221110 010000046899


Q ss_pred             EEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      |+. ..     .  ..++...+.|+++|+++....
T Consensus       193 vid-~g-----~--~~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          193 VLE-VR-----G--KEVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             EEE-CS-----C--TTHHHHHTTEEEEEEEEEC--
T ss_pred             EEE-CC-----H--HHHHHHHHhhccCCEEEEEeC
Confidence            887 32     1  257888999999999887543

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=89.67  E-value=0.18  Score=34.14  Aligned_cols=32  Identities=31%  Similarity=0.676  Sum_probs=23.9

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCC
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g  102 (304)
                      ++.|| |+.........         ....|+ ||.....++.
T Consensus         4 vv~C~-C~~~~~~~~~~---------kT~~C~-CG~~~~~~k~   35 (71)
T 1gh9_A            4 IFRCD-CGRALYSREGA---------KTRKCV-CGRTVNVKDR   35 (71)
T ss_dssp             EEEET-TSCCEEEETTC---------SEEEET-TTEEEECCSS
T ss_pred             EEECC-CCCEEEEcCCC---------cEEECC-CCCeeeeceE
Confidence            57899 99987665532         578999 9998766543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=89.54  E-value=1.8  Score=36.52  Aligned_cols=101  Identities=21%  Similarity=0.307  Sum_probs=66.4

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC--------
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--------  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--------  234 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.+|.++..++...+.+       ..++.++.+|+.+..--        
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEF-------GPRVHALRSDIADLNEIAVLGAAAG   77 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCcceEEEccCCCHHHHHHHHHHHH
Confidence            46789988887652   4556666676  9999999988776665543       24688999999774200        


Q ss_pred             --CCccceEEecchhccCC-----CHH--------------HHHHHHHHhcccCcEEEEEEe
Q 021975          235 --SGFVDAVHAGAALHCWP-----SPS--------------NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 --~~~fD~V~~~~vl~h~~-----d~~--------------~~l~~~~r~LkpgG~lvi~~~  275 (304)
                        -+.+|+++.+..+....     +++              .+.+.+...++.+|.++...-
T Consensus        78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  139 (255)
T 4eso_A           78 QTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS  139 (255)
T ss_dssp             HHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence              13689988875543321     111              235566667777888776553

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=89.53  E-value=0.9  Score=40.26  Aligned_cols=95  Identities=14%  Similarity=0.013  Sum_probs=62.1

Q ss_pred             hhcccCCCeEEEEcC-C-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------
Q 021975          161 YFKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (304)
Q Consensus       161 ~l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (304)
                      .....++.+||-+|+ | .|.....+++.. +.+|+++ .+++.++.+++.    +    .  ..+. +-.+..      
T Consensus       145 ~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~l----G----a--~~i~-~~~~~~~~~~~~  211 (343)
T 3gaz_A          145 RAQVQDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRDL----G----A--TPID-ASREPEDYAAEH  211 (343)
T ss_dssp             TTCCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHHH----T----S--EEEE-TTSCHHHHHHHH
T ss_pred             hcCCCCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHHc----C----C--CEec-cCCCHHHHHHHH
Confidence            344567889999994 3 477777777763 3499999 788887777652    2    1  2222 222211      


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .....+|+|+..-.     .  ..+....+.|+++|.++....
T Consensus       212 ~~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g~  247 (343)
T 3gaz_A          212 TAGQGFDLVYDTLG-----G--PVLDASFSAVKRFGHVVSCLG  247 (343)
T ss_dssp             HTTSCEEEEEESSC-----T--HHHHHHHHHEEEEEEEEESCC
T ss_pred             hcCCCceEEEECCC-----c--HHHHHHHHHHhcCCeEEEEcc
Confidence            11246998886432     2  468888999999999887543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=89.44  E-value=0.55  Score=42.11  Aligned_cols=95  Identities=18%  Similarity=0.185  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC-CCCCCCCCccceEEe
Q 021975          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHA  243 (304)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~V~~  243 (304)
                      ++.+||-+|+|. |.....+++.. +.+|+++|.+++..+.+++.+   +    .. .++...- ..+.-..+.+|+|+.
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~l---G----a~-~v~~~~~~~~~~~~~~~~D~vid  257 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNF---G----AD-SFLVSRDQEQMQAAAGTLDGIID  257 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTS---C----CS-EEEETTCHHHHHHTTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhc---C----Cc-eEEeccCHHHHHHhhCCCCEEEE
Confidence            688999999864 66677777663 349999999988777665322   1    11 1221110 000000136899887


Q ss_pred             cchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .-....      .++...+.|+++|+++....
T Consensus       258 ~~g~~~------~~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          258 TVSAVH------PLLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             CCSSCC------CSHHHHHHEEEEEEEEECCC
T ss_pred             CCCcHH------HHHHHHHHHhcCCEEEEEcc
Confidence            543211      25667789999999887654

>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=89.39  E-value=0.16  Score=31.91  Aligned_cols=40  Identities=18%  Similarity=0.376  Sum_probs=23.5

Q ss_pred             CCeeeccCCCccccc-cCCCCccccccccCceeeCCCCccc
Q 021975           58 GDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        58 ~~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      .....||.|+..-.. ...+.-+.++-+.-.+.|.+|++.+
T Consensus         7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w   47 (50)
T 1tfi_A            7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence            456789999985321 0001112233344678999999875

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=89.35  E-value=3  Score=35.86  Aligned_cols=103  Identities=17%  Similarity=0.260  Sum_probs=65.6

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHH-HHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC--
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSEN-MLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~-~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.++.+.. ..+...+..+..+    .++.++.+|+.+..     +.  
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~  119 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKEG----VKCVLLPGDLSDEQHCKDIVQET  119 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT----CCEEEEESCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHHHHHH
Confidence            46789999887652   4556666676  9999998765 3444444444433    67899999997742     10  


Q ss_pred             ---CCccceEEecchhccCC------CHH--------------HHHHHHHHhcccCcEEEEEE
Q 021975          235 ---SGFVDAVHAGAALHCWP------SPS--------------NAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       235 ---~~~fD~V~~~~vl~h~~------d~~--------------~~l~~~~r~LkpgG~lvi~~  274 (304)
                         -+.+|+++.+....+..      +.+              .+++.+.+.++.+|.++...
T Consensus       120 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          120 VRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             HHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence               13689998875433211      111              24567777888888877654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=89.12  E-value=3  Score=35.04  Aligned_cols=78  Identities=23%  Similarity=0.332  Sum_probs=55.9

Q ss_pred             CCCeEEEEcC-Ccc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC--
Q 021975          166 QGGLLVDVSC-GSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (304)
Q Consensus       166 ~~~~vLDiGc-G~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (304)
                      .++++|=.|+ |.|  . +...|++.+.  +|+.++.+...++...+.++..+   ..++.++.+|+.+..     +.  
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~   95 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG---LGRVEAVVCDVTSTEAVDALITQT   95 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC---SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC---CCceEEEEeCCCCHHHHHHHHHHH
Confidence            4678999987 554  3 4566777776  99999999988877777665443   367999999997742     10  


Q ss_pred             ---CCccceEEecchhc
Q 021975          235 ---SGFVDAVHAGAALH  248 (304)
Q Consensus       235 ---~~~fD~V~~~~vl~  248 (304)
                         -+.+|+++.+..+.
T Consensus        96 ~~~~g~id~li~~Ag~~  112 (266)
T 3o38_A           96 VEKAGRLDVLVNNAGLG  112 (266)
T ss_dssp             HHHHSCCCEEEECCCCC
T ss_pred             HHHhCCCcEEEECCCcC
Confidence               13689999876643

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=89.11  E-value=3.6  Score=34.77  Aligned_cols=105  Identities=22%  Similarity=0.284  Sum_probs=68.0

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeC-CHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC--
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDF-SENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~-s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.++. +....+...+.++..+    .++.++.+|+.+..     +.  
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~   90 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALG----SDAIAIKADIRQVPEIVKLFDQA   90 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHHHHHHH
Confidence            46788888877652   4556666676  8988775 4555555555555543    67899999997742     10  


Q ss_pred             ---CCccceEEecchhccCC-----CHH--------------HHHHHHHHhcccCcEEEEEEeC
Q 021975          235 ---SGFVDAVHAGAALHCWP-----SPS--------------NAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       235 ---~~~fD~V~~~~vl~h~~-----d~~--------------~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                         -+..|+++.+..+.+..     +++              .+.+.+.+.++.+|.++...-.
T Consensus        91 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  154 (270)
T 3is3_A           91 VAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSN  154 (270)
T ss_dssp             HHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCT
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence               13689999876543322     111              2457778888888988776543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=89.07  E-value=0.46  Score=46.38  Aligned_cols=106  Identities=16%  Similarity=0.105  Sum_probs=63.8

Q ss_pred             CCeEEEEcCCccHHHHHHHHh-------CC-----CCeEEEEeC---CHHHHHHHHHH-----------HHhcCcc----
Q 021975          167 GGLLVDVSCGSGLFSRKFAKS-------GT-----YSGVVALDF---SENMLRQCYDF-----------IKQDNTI----  216 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~-------~~-----~~~v~giD~---s~~~~~~a~~~-----------~~~~~~~----  216 (304)
                      .-+|||+|-|+|.........       .|     ...++++|.   +.+.+..+...           .+.....    
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            458999999999875554332       11     245899998   77776644331           1111100    


Q ss_pred             -------CCCCeEEEEccCCC-CC-CC---CCccceEEecchhccCCCH----HHHHHHHHHhcccCcEEEEE
Q 021975          217 -------LTSNLALVRADVCR-LP-FA---SGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       217 -------~~~~i~~~~~d~~~-lp-~~---~~~fD~V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~lvi~  273 (304)
                             ....+++..+|+.+ ++ +.   +..||+|+.... ---.+|    ..++..+.++++|||.+...
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f-~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  218 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGF-APAKNPDMWTQNLFNAMARLARPGGTLATF  218 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCS-CGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCC-CCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence                   01334566677643 22 11   467999988542 111233    47899999999999987643

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=88.84  E-value=2  Score=36.23  Aligned_cols=105  Identities=15%  Similarity=0.259  Sum_probs=68.1

Q ss_pred             CCCeEEEEcCC----ccH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC-
Q 021975          166 QGGLLVDVSCG----SGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-  234 (304)
Q Consensus       166 ~~~~vLDiGcG----~G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-  234 (304)
                      .++++|-.|++    .|. ....|++.|.  +|+.++.+....+.+.+..+..+   ..++.++.+|+.+..     +. 
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~   80 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLD---RNDSIILPCDVTNDAEIETCFAS   80 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSS---SCCCEEEECCCSSSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcC---CCCceEEeCCCCCHHHHHHHHHH
Confidence            46789999976    333 5667777776  99999988766666655555443   237899999998743     10 


Q ss_pred             ----CCccceEEecchhcc----C-----CCHH--------------HHHHHHHHhcccCcEEEEEEe
Q 021975          235 ----SGFVDAVHAGAALHC----W-----PSPS--------------NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 ----~~~fD~V~~~~vl~h----~-----~d~~--------------~~l~~~~r~LkpgG~lvi~~~  275 (304)
                          -+.+|+++.+..+.+    .     .+..              .+++.+...++++|.++....
T Consensus        81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  148 (266)
T 3oig_A           81 IKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY  148 (266)
T ss_dssp             HHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence                136898888655432    0     1121              245666777788888877664

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=88.79  E-value=0.89  Score=39.89  Aligned_cols=95  Identities=15%  Similarity=0.095  Sum_probs=58.5

Q ss_pred             cCCC-eEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC-CC--CCCCCCcc
Q 021975          165 AQGG-LLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CR--LPFASGFV  238 (304)
Q Consensus       165 ~~~~-~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~--lp~~~~~f  238 (304)
                      .++. +||-+|+  |.|.....+++.. +.++++++.+++.++.+++.    +    ....+-..+. ..  .....+.+
T Consensus       147 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~l----G----a~~~i~~~~~~~~~~~~~~~~~~  217 (328)
T 1xa0_A          147 TPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVL----G----AKEVLAREDVMAERIRPLDKQRW  217 (328)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHT----T----CSEEEECC---------CCSCCE
T ss_pred             CCCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc----C----CcEEEecCCcHHHHHHHhcCCcc
Confidence            3453 7999997  4577777777763 34899999998877777651    2    1111111111 00  01123468


Q ss_pred             ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      |+|+..-.     .  ..+....+.|+++|++++...
T Consensus       218 d~vid~~g-----~--~~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          218 AAAVDPVG-----G--RTLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             EEEEECST-----T--TTHHHHHHTEEEEEEEEECSC
T ss_pred             cEEEECCc-----H--HHHHHHHHhhccCCEEEEEee
Confidence            98876432     2  247788899999999887654

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=88.68  E-value=3.6  Score=34.93  Aligned_cols=78  Identities=18%  Similarity=0.309  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeC-------------CHHHHHHHHHHHHhcCccCCCCeEEEEccCC
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDF-------------SENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~-------------s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.+|.             +...++...+.+...+    .++.++.+|+.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~   83 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN----RRIVAAVVDTR   83 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT----CCEEEEECCTT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC----CeEEEEECCCC
Confidence            46789988887662   4566667776  9999998             6666666666555543    67899999997


Q ss_pred             CCC-----CC-----CCccceEEecchhcc
Q 021975          230 RLP-----FA-----SGFVDAVHAGAALHC  249 (304)
Q Consensus       230 ~lp-----~~-----~~~fD~V~~~~vl~h  249 (304)
                      +..     +.     -+..|+++.+..+..
T Consensus        84 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~  113 (277)
T 3tsc_A           84 DFDRLRKVVDDGVAALGRLDIIVANAGVAA  113 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            742     11     146899998765543

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=88.63  E-value=2.3  Score=39.20  Aligned_cols=96  Identities=16%  Similarity=0.214  Sum_probs=63.0

Q ss_pred             cccCCCeEEEEcC-C-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--------
Q 021975          163 KSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------  232 (304)
Q Consensus       163 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------  232 (304)
                      ...++.+||-+|+ | .|.+...+++.. +.++++++.+++-++.+++.    +    .. .++...-.+..        
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~l----G----a~-~vi~~~~~d~~~~~~~~~~  294 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRAM----G----AE-AIIDRNAEGYRFWKDENTQ  294 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH----T----CC-EEEETTTTTCCSEEETTEE
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHhh----C----Cc-EEEecCcCccccccccccc
Confidence            4457889999997 4 477777777763 34999999999888888662    1    11 12221111110        


Q ss_pred             ---------------CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 ---------------FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ---------------~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                                     .....+|+|+-.-.       ...+....+.|++||++++...
T Consensus       295 ~~~~~~~~~~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~G~  345 (456)
T 3krt_A          295 DPKEWKRFGKRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTCAS  345 (456)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEESCC
T ss_pred             chHHHHHHHHHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEEec
Confidence                           01247898886432       2468889999999999987643

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=88.49  E-value=0.99  Score=39.68  Aligned_cols=97  Identities=14%  Similarity=0.228  Sum_probs=64.9

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC-CCccceEEecchh
Q 021975          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGAAL  247 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl  247 (304)
                      +|||+=||.|.+..-+.+.|. .-+.++|+++.+++.-+.+.         .-.++.+|+.++... -..+|+++...-.
T Consensus         2 kvidLFsG~GG~~~G~~~aG~-~~v~a~e~d~~a~~ty~~N~---------~~~~~~~DI~~i~~~~~~~~D~l~ggpPC   71 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNH---------SAKLIKGDISKISSDEFPKCDGIIGGPPS   71 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTC-EEEEEEECCTTTHHHHHHHC---------CSEEEESCGGGCCGGGSCCCSEEECCCCG
T ss_pred             eEEEeCcCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHC---------CCCcccCChhhCCHhhCCcccEEEecCCC
Confidence            699999999999999999874 46779999999888877753         235778898776421 1358999875432


Q ss_pred             cc---------CCCHH-HHHH---HHHHhcccCcEEEEEEeCC
Q 021975          248 HC---------WPSPS-NAVA---EISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       248 ~h---------~~d~~-~~l~---~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..         ..|+. .++.   ++.+.++|.  +++.+...
T Consensus        72 Q~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~  112 (331)
T 3ubt_Y           72 QSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVK  112 (331)
T ss_dssp             GGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECC
T ss_pred             CCcCCCCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeec
Confidence            22         23543 2333   344556784  45555443

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=88.46  E-value=3.6  Score=34.65  Aligned_cols=104  Identities=15%  Similarity=0.233  Sum_probs=63.1

Q ss_pred             CCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC----
Q 021975          167 GGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA----  234 (304)
Q Consensus       167 ~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----  234 (304)
                      ++++|-.|++.|   .....|++.|.  +|+.++.++...+...+.+....  ...++.++.+|+.+..     +.    
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQF--EPQKTLFIQCDVADQQQLRDTFRKVVD   82 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTS--CGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhc--CCCceEEEecCCCCHHHHHHHHHHHHH
Confidence            567888887654   24455666666  99999999876665554443321  1246888999987632     10    


Q ss_pred             -CCccceEEecchhccCCCHHH-----------HHHHHHHhccc-----CcEEEEEE
Q 021975          235 -SGFVDAVHAGAALHCWPSPSN-----------AVAEISRILRS-----GGVFVGTT  274 (304)
Q Consensus       235 -~~~fD~V~~~~vl~h~~d~~~-----------~l~~~~r~Lkp-----gG~lvi~~  274 (304)
                       -+.+|+++.+..+....+...           ..+.+.+.++.     +|.++...
T Consensus        83 ~~g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~is  139 (267)
T 2gdz_A           83 HFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMS  139 (267)
T ss_dssp             HHSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred             HcCCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeC
Confidence             135799998776544344432           23445555543     57766554

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=88.36  E-value=3.9  Score=34.74  Aligned_cols=104  Identities=18%  Similarity=0.198  Sum_probs=67.1

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCC-HHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC--
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS-ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s-~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.++.. ....+...+.++..+    .++.++.+|+.+..     +.  
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~~~~~~  103 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAG----GRAVAIRADNRDAEAIEQAIRET  103 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHHHHHH
Confidence            46789999987652   4566666776  89888654 455555555555443    67889999997742     10  


Q ss_pred             ---CCccceEEecchhccCC-----CHH--------------HHHHHHHHhcccCcEEEEEEe
Q 021975          235 ---SGFVDAVHAGAALHCWP-----SPS--------------NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 ---~~~fD~V~~~~vl~h~~-----d~~--------------~~l~~~~r~LkpgG~lvi~~~  275 (304)
                         -+..|+++.+..+.+..     +++              .+++.+.+.|+.+|.++...-
T Consensus       104 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          104 VEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence               13689999876543321     111              246777788888888777653

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=88.24  E-value=2.6  Score=36.35  Aligned_cols=104  Identities=17%  Similarity=0.183  Sum_probs=66.3

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCC--HHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC-
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS--ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s--~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-  234 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.++.+  ....+...+.++..+    .++.++.+|+.+..     +. 
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~  121 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEECG----RKAVLLPGDLSDESFARSLVHK  121 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHTT----CCEEECCCCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHcC----CcEEEEEecCCCHHHHHHHHHH
Confidence            46789999877652   4556666676  89999886  344555555454443    67889999987742     00 


Q ss_pred             ----CCccceEEecchhccC-C-----CHH--------------HHHHHHHHhcccCcEEEEEEe
Q 021975          235 ----SGFVDAVHAGAALHCW-P-----SPS--------------NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 ----~~~fD~V~~~~vl~h~-~-----d~~--------------~~l~~~~r~LkpgG~lvi~~~  275 (304)
                          -+.+|+++.+..+... .     +++              .+++.+.+.++.+|.++...-
T Consensus       122 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS  186 (294)
T 3r3s_A          122 AREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS  186 (294)
T ss_dssp             HHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence                1468999987654321 1     111              245666777888888777654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=88.21  E-value=0.33  Score=42.97  Aligned_cols=57  Identities=18%  Similarity=0.114  Sum_probs=40.6

Q ss_pred             CCeEEEEccCCC-CC-CCCCccceEEecchhccC--------------CCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          219 SNLALVRADVCR-LP-FASGFVDAVHAGAALHCW--------------PSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       219 ~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~--------------~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ....++++|... +. +++++||+|++.--....              ......++++.++|||||.+++..-
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~   85 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG   85 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence            457888898754 33 557899999996332111              1245788999999999999988653

>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=88.07  E-value=0.16  Score=35.26  Aligned_cols=31  Identities=23%  Similarity=0.726  Sum_probs=22.2

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      ....||.|+..-....         -.+.|.|..|+..+.
T Consensus        34 ~ky~CpfCGk~~vkR~---------a~GIW~C~kCg~~~A   64 (83)
T 3j21_i           34 QKHTCPVCGRKAVKRI---------STGIWQCQKCGATFA   64 (83)
T ss_dssp             SCBCCSSSCSSCEEEE---------ETTEEEETTTCCEEE
T ss_pred             cccCCCCCCCceeEec---------CcCeEEcCCCCCEEe
Confidence            4588999999643211         127999999998763

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=88.05  E-value=5.1  Score=34.50  Aligned_cols=76  Identities=21%  Similarity=0.300  Sum_probs=53.1

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCC------------HHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS------------ENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s------------~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.+|.+            ++.++...+.++..+    .++.++.+|+.+
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~  100 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG----RRIIASQVDVRD  100 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT----CCEEEEECCTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhcC----CceEEEECCCCC
Confidence            46789999987762   4566666776  99999987            666666655555544    678999999977


Q ss_pred             CC-----CC-----CCccceEEecchh
Q 021975          231 LP-----FA-----SGFVDAVHAGAAL  247 (304)
Q Consensus       231 lp-----~~-----~~~fD~V~~~~vl  247 (304)
                      ..     +.     -+..|+++.+..+
T Consensus       101 ~~~v~~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          101 FDAMQAAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            42     10     1468999887654

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=87.93  E-value=3.3  Score=35.17  Aligned_cols=78  Identities=19%  Similarity=0.244  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----------
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (304)
                      +++++|--|++.|-   ....|++.|.  +|+..|.+++.++...+.+...+    .++..+.+|+.+..          
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g----~~~~~~~~Dv~~~~~v~~~~~~~~   81 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKG----YDAHGVAFDVTDELAIEAAFSKLD   81 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT----CCEEECCCCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEeeCCCHHHHHHHHHHHH
Confidence            47788888877763   4566666776  99999999998888877777665    67889999987732          


Q ss_pred             CCCCccceEEecchhcc
Q 021975          233 FASGFVDAVHAGAALHC  249 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h  249 (304)
                      -.-+..|+++.+..+.+
T Consensus        82 ~~~G~iDiLVNNAG~~~   98 (255)
T 4g81_D           82 AEGIHVDILINNAGIQY   98 (255)
T ss_dssp             HTTCCCCEEEECCCCCC
T ss_pred             HHCCCCcEEEECCCCCC
Confidence            11357899998766544

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=87.82  E-value=1.1  Score=37.70  Aligned_cols=102  Identities=10%  Similarity=0.050  Sum_probs=62.3

Q ss_pred             CCCeEEEEcCCccHHHH----HHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC-
Q 021975          166 QGGLLVDVSCGSGLFSR----KFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~----~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-  234 (304)
                      ++++||=.|++ |..+.    .|++ .+.  +|++++.++...+...+.+...+    .++.++.+|+.+..     +. 
T Consensus         3 ~~k~vlITGas-ggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~~~~   75 (276)
T 1wma_A            3 GIHVALVTGGN-KGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG----LSPRFHQLDIDDLQSIRALRDF   75 (276)
T ss_dssp             CCCEEEESSCS-SHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcC----CeeEEEECCCCCHHHHHHHHHH
Confidence            35678877754 44444    4445 555  99999999877766666555433    56889999997742     00 


Q ss_pred             ----CCccceEEecchhccCC----C-HH--------------HHHHHHHHhcccCcEEEEEE
Q 021975          235 ----SGFVDAVHAGAALHCWP----S-PS--------------NAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       235 ----~~~fD~V~~~~vl~h~~----d-~~--------------~~l~~~~r~LkpgG~lvi~~  274 (304)
                          -+.+|+|+.........    . ..              .+++.+.+.++++|.++...
T Consensus        76 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s  138 (276)
T 1wma_A           76 LRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  138 (276)
T ss_dssp             HHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence                12689988765432211    1 11              23455666666677777654

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=87.52  E-value=0.9  Score=42.54  Aligned_cols=73  Identities=16%  Similarity=0.201  Sum_probs=51.7

Q ss_pred             HHHHHHHHhhccc------CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc
Q 021975          153 EEFKMAQEYFKSA------QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (304)
Q Consensus       153 ~~~~~l~~~l~~~------~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (304)
                      .+...+..+++..      ...+++|+=||.|.+..-+.+.|. ..+.++|+++.+++.-+.++..     .+...++.+
T Consensus        68 ~~~~~l~~~~~~~p~~~~~~~~~viDLFaG~GGlslG~~~aG~-~~v~avE~d~~A~~ty~~N~~~-----~p~~~~~~~  141 (482)
T 3me5_A           68 KEFAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIGG-QCVFTSEWNKHAVRTYKANHYC-----DPATHHFNE  141 (482)
T ss_dssp             HHHHHHHTTSCCCCTTTTCCSEEEEEESCTTSHHHHHHHTTTE-EEEEEECCCHHHHHHHHHHSCC-----CTTTCEEES
T ss_pred             HHHHHHHhhCCCCCccCCCccceEEEecCCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHhccc-----CCCcceecc
Confidence            3445566555532      235799999999999999998874 3588999999988877776421     134456778


Q ss_pred             cCCCC
Q 021975          227 DVCRL  231 (304)
Q Consensus       227 d~~~l  231 (304)
                      |+.++
T Consensus       142 DI~~i  146 (482)
T 3me5_A          142 DIRDI  146 (482)
T ss_dssp             CTHHH
T ss_pred             chhhh
Confidence            87654

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=87.49  E-value=1.4  Score=41.30  Aligned_cols=92  Identities=12%  Similarity=0.047  Sum_probs=56.6

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEE
Q 021975          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (304)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (304)
                      ...+.+|+=+|+|. |......++.. +.+|+++|.++...+.+++          .++.+  .++.+. +  ...|+|+
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A~~----------~Ga~~--~~l~e~-l--~~aDvVi  334 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDPINALQAMM----------EGFDV--VTVEEA-I--GDADIVV  334 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----------TTCEE--CCHHHH-G--GGCSEEE
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----------cCCEE--ecHHHH-H--hCCCEEE
Confidence            34688999999975 55444444442 3499999999987776654          12232  122221 1  3579888


Q ss_pred             ecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ..-.-.++-     -.+..+.||+||+++.....
T Consensus       335 ~atgt~~~i-----~~~~l~~mk~ggilvnvG~~  363 (494)
T 3ce6_A          335 TATGNKDII-----MLEHIKAMKDHAILGNIGHF  363 (494)
T ss_dssp             ECSSSSCSB-----CHHHHHHSCTTCEEEECSSS
T ss_pred             ECCCCHHHH-----HHHHHHhcCCCcEEEEeCCC
Confidence            753222221     13567789999988766543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=87.34  E-value=0.34  Score=43.89  Aligned_cols=102  Identities=18%  Similarity=0.158  Sum_probs=56.3

Q ss_pred             cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      .++.+|+=+|+|. |......++.. +.+|+++|.++..++.+++.+.       ..+.....+..++.-.-...|+|+.
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~~g-------~~~~~~~~~~~~l~~~l~~aDvVi~  237 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAEFC-------GRIHTRYSSAYELEGAVKRADLVIG  237 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTT-------TSSEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhcC-------CeeEeccCCHHHHHHHHcCCCEEEE
Confidence            4578999999964 44444444432 3399999999988777765321       1111111111111000125798887


Q ss_pred             cchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      .-.......+.-+.++..+.+||||+++-..
T Consensus       238 ~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          238 AVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            4322111111222466778899999887655

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=87.13  E-value=0.21  Score=36.92  Aligned_cols=30  Identities=30%  Similarity=0.755  Sum_probs=22.1

Q ss_pred             CeeeccCCCcc-ccccCCCCccccccccCceeeCCCCcccc
Q 021975           59 DLFSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        59 ~~l~CP~C~~~-l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      ....||.|+.. +.+..          .+.|.|..|+..+.
T Consensus        59 akytCPfCGk~~vKR~a----------vGIW~C~~Cgk~fA   89 (116)
T 3cc2_Z           59 EDHACPNCGEDRVDRQG----------TGIWQCSYCDYKFT   89 (116)
T ss_dssp             SCEECSSSCCEEEEEEE----------TTEEEETTTCCEEE
T ss_pred             cCCcCCCCCCceeEecC----------ceeEECCCCCCEEE
Confidence            56899999984 33322          27899999998763

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=87.07  E-value=0.79  Score=41.88  Aligned_cols=99  Identities=18%  Similarity=0.174  Sum_probs=58.2

Q ss_pred             cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC-------------C
Q 021975          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-------------R  230 (304)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-------------~  230 (304)
                      .++.+|+=+|+|. |.....++... +.+|+++|.++..++.+++.          +..++..+..             .
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~~----------G~~~~~~~~~~~~d~~~~~~ya~e  256 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRPAAKEQVASL----------GAKFIAVEDEEFKAAETAGGYAKE  256 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSTTHHHHHHHT----------TCEECCCCC---------------
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHc----------CCceeecccccccccccccchhhh
Confidence            3578999999985 55555555542 34999999999887777651          1222221110             0


Q ss_pred             CC----------CC--CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          231 LP----------FA--SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       231 lp----------~~--~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ++          +.  -...|+|+....+.--..|.-+-+++.+.+|||.+++=..
T Consensus       257 ~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA  312 (405)
T 4dio_A          257 MSGEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA  312 (405)
T ss_dssp             --CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             cchhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence            00          00  0357999865322221223233478899999998777544

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=87.02  E-value=4.9  Score=34.22  Aligned_cols=77  Identities=16%  Similarity=0.225  Sum_probs=52.9

Q ss_pred             cCCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeC-CHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC-----C-
Q 021975          165 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDF-SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A-  234 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~-s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~-  234 (304)
                      ..++++|-.|++.|-   ....|++.|.  +|+.+|. +++.++...+.+...+    .++.++.+|+.+...     . 
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~  100 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGLG----ARVIFLRADLADLSSHQATVDA  100 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHTT----CCEEEEECCTTSGGGHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHHHHHH
Confidence            356788988877652   4566666676  9999995 7766666666555543    679999999987531     0 


Q ss_pred             ----CCccceEEecchh
Q 021975          235 ----SGFVDAVHAGAAL  247 (304)
Q Consensus       235 ----~~~fD~V~~~~vl  247 (304)
                          -+..|+++.+..+
T Consensus       101 ~~~~~g~iD~lvnnAg~  117 (280)
T 4da9_A          101 VVAEFGRIDCLVNNAGI  117 (280)
T ss_dssp             HHHHHSCCCEEEEECC-
T ss_pred             HHHHcCCCCEEEECCCc
Confidence                1368999987655

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=87.00  E-value=6  Score=33.34  Aligned_cols=78  Identities=17%  Similarity=0.201  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC-----C---
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A---  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~---  234 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.++.++..++.+.+.+....   ..++.++.+|+.+..-     .   
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~   93 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF---GTDVHTVAIDLAEPDAPAELARRAA   93 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc---CCcEEEEEecCCCHHHHHHHHHHHH
Confidence            46788888876652   4555666676  99999999988777766654421   2578999999987531     0   


Q ss_pred             --CCccceEEecchhc
Q 021975          235 --SGFVDAVHAGAALH  248 (304)
Q Consensus       235 --~~~fD~V~~~~vl~  248 (304)
                        -+..|+++.+..+.
T Consensus        94 ~~~g~id~lv~nAg~~  109 (266)
T 4egf_A           94 EAFGGLDVLVNNAGIS  109 (266)
T ss_dssp             HHHTSCSEEEEECCCC
T ss_pred             HHcCCCCEEEECCCcC
Confidence              13689999876543

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=86.98  E-value=0.37  Score=32.43  Aligned_cols=28  Identities=18%  Similarity=0.539  Sum_probs=21.1

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (304)
                      -.+.|+.||..+.....          ...+|+.||+.
T Consensus        27 v~Y~C~~CG~~~e~~~~----------d~irCp~CG~R   54 (70)
T 1twf_L           27 LKYICAECSSKLSLSRT----------DAVRCKDCGHR   54 (70)
T ss_dssp             CCEECSSSCCEECCCTT----------STTCCSSSCCC
T ss_pred             EEEECCCCCCcceeCCC----------CCccCCCCCce
Confidence            45889999998655321          46799999984

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=86.85  E-value=9.7  Score=32.09  Aligned_cols=78  Identities=19%  Similarity=0.204  Sum_probs=51.5

Q ss_pred             CCCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (304)
                      .++++|-.|++.|   .+...|++.|.  +|++++.++..++...+.++..+  ...++.++.+|+.+..     +.   
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~  106 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAG--YPGTLIPYRCDLSNEEDILSMFSAIR  106 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcC--CCceEEEEEecCCCHHHHHHHHHHHH
Confidence            4678888887654   23445555665  99999999887776666555443  2246788899987642     00   


Q ss_pred             --CCccceEEecchh
Q 021975          235 --SGFVDAVHAGAAL  247 (304)
Q Consensus       235 --~~~fD~V~~~~vl  247 (304)
                        -+.+|+|+....+
T Consensus       107 ~~~g~iD~vi~~Ag~  121 (279)
T 1xg5_A          107 SQHSGVDICINNAGL  121 (279)
T ss_dssp             HHHCCCSEEEECCCC
T ss_pred             HhCCCCCEEEECCCC
Confidence              1368999887654

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=86.83  E-value=1.3  Score=37.53  Aligned_cols=103  Identities=15%  Similarity=0.151  Sum_probs=65.6

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEE-eCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC--
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVAL-DFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gi-D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.+ +.+....+...+.++..+    .++.++.+|+.+..     +.  
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~   80 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLG----RSALAIKADLTNAAEVEAAISAA   80 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTT----SCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC----CceEEEEcCCCCHHHHHHHHHHH
Confidence            46789988887662   4566666676  88888 667666666666565543    57889999997742     10  


Q ss_pred             ---CCccceEEecchhc-c---CC--CHH--------------HHHHHHHHhcccCcEEEEEE
Q 021975          235 ---SGFVDAVHAGAALH-C---WP--SPS--------------NAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       235 ---~~~fD~V~~~~vl~-h---~~--d~~--------------~~l~~~~r~LkpgG~lvi~~  274 (304)
                         -+..|+++.+.... .   +.  +++              .+.+.+.+.++++|.++...
T Consensus        81 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  143 (259)
T 3edm_A           81 ADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS  143 (259)
T ss_dssp             HHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence               13689998866432 1   11  111              23556666777778777654

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=86.82  E-value=0.81  Score=40.20  Aligned_cols=94  Identities=13%  Similarity=0.120  Sum_probs=59.2

Q ss_pred             cCCC-eEEEEcC--CccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC--CC-CCCCCCc
Q 021975          165 AQGG-LLVDVSC--GSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CR-LPFASGF  237 (304)
Q Consensus       165 ~~~~-~vLDiGc--G~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~-lp~~~~~  237 (304)
                      .++. +||-+|+  |.|.....+++. |.  ++++++.+++.++.+++.    +    ....+-..+.  .. .....+.
T Consensus       148 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga--~vi~~~~~~~~~~~~~~l----G----a~~v~~~~~~~~~~~~~~~~~~  217 (330)
T 1tt7_A          148 SPEKGSVLVTGATGGVGGIAVSMLNKRGY--DVVASTGNREAADYLKQL----G----ASEVISREDVYDGTLKALSKQQ  217 (330)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHHTC--CEEEEESSSSTHHHHHHH----T----CSEEEEHHHHCSSCCCSSCCCC
T ss_pred             CCCCceEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHc----C----CcEEEECCCchHHHHHHhhcCC
Confidence            3453 8999997  357777777765 54  899999988777777652    1    1111111111  11 1122346


Q ss_pred             cceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +|+|+..-     ..  ..+.+..+.|++||++++...
T Consensus       218 ~d~vid~~-----g~--~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          218 WQGAVDPV-----GG--KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             EEEEEESC-----CT--HHHHHHHTTEEEEEEEEECCC
T ss_pred             ccEEEECC-----cH--HHHHHHHHhhcCCCEEEEEec
Confidence            89887643     23  368889999999999887654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=86.64  E-value=5.2  Score=34.95  Aligned_cols=91  Identities=14%  Similarity=0.162  Sum_probs=57.7

Q ss_pred             CCeEEEEcCCc-c-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CCCCCCccceEEe
Q 021975          167 GGLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHA  243 (304)
Q Consensus       167 ~~~vLDiGcG~-G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~~  243 (304)
                      ..+|.=||+|. | .+...+.+.|...+|+++|.+++.++.+.+    .+    . +.-...+..+ .   -...|+|+.
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G----~-~~~~~~~~~~~~---~~~aDvVil  100 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LG----I-IDEGTTSIAKVE---DFSPDFVML  100 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TT----S-CSEEESCTTGGG---GGCCSEEEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CC----C-cchhcCCHHHHh---hccCCEEEE
Confidence            36899999985 3 456666666654589999999988777664    12    1 1112233332 1   134788887


Q ss_pred             cchhccCCCHHHHHHHHHHhcccCcEEEE
Q 021975          244 GAALHCWPSPSNAVAEISRILRSGGVFVG  272 (304)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~lvi  272 (304)
                      .--..   ....+++++...|++|.+++-
T Consensus       101 avp~~---~~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A          101 SSPVR---TFREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             CSCGG---GHHHHHHHHHHHSCTTCEEEE
T ss_pred             eCCHH---HHHHHHHHHhhccCCCcEEEE
Confidence            53322   235678889899998876543

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=86.49  E-value=3.5  Score=35.15  Aligned_cols=76  Identities=14%  Similarity=0.136  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC---------
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---------  233 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.+|.++...+...+.+...+    .++.++.+|+.+...         
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~~~~~~~  105 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASG----GTAQELAGDLSEAGAGTDLIERAE  105 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTT----CCEEEEECCTTSTTHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC----CeEEEEEecCCCHHHHHHHHHHHH
Confidence            46788888876652   4555666676  99999998877777666665544    678999999977430         


Q ss_pred             CCCccceEEecchh
Q 021975          234 ASGFVDAVHAGAAL  247 (304)
Q Consensus       234 ~~~~fD~V~~~~vl  247 (304)
                      ..+.+|+++.+..+
T Consensus       106 ~~g~iD~lvnnAg~  119 (275)
T 4imr_A          106 AIAPVDILVINASA  119 (275)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HhCCCCEEEECCCC
Confidence            01468999987654

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=86.41  E-value=1.8  Score=36.43  Aligned_cols=76  Identities=18%  Similarity=0.256  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeC-CHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC--
Q 021975          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDF-SENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~-s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (304)
                      ++++||=.|++.|   .+...|++.|.  +|++++. ++...+...+.++..+    .++.++.+|+.+..     +.  
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~~~~~   93 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG----AQGVAIQADISKPSEVVALFDKA   93 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHHHHHHH
Confidence            3567887776543   23444555565  9999998 7766665555554433    57889999987642     10  


Q ss_pred             ---CCccceEEecchh
Q 021975          235 ---SGFVDAVHAGAAL  247 (304)
Q Consensus       235 ---~~~fD~V~~~~vl  247 (304)
                         -+.+|+|+.....
T Consensus        94 ~~~~~~~d~vi~~Ag~  109 (274)
T 1ja9_A           94 VSHFGGLDFVMSNSGM  109 (274)
T ss_dssp             HHHHSCEEEEECCCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence               0268999876554

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=86.23  E-value=17  Score=32.05  Aligned_cols=120  Identities=13%  Similarity=0.186  Sum_probs=76.7

Q ss_pred             HHHHHhhccc-CCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCc------------------
Q 021975          156 KMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNT------------------  215 (304)
Q Consensus       156 ~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~------------------  215 (304)
                      +.+.+++... +...|+-+|||.=.....+...+ +...++=+|. |+.++.=++.+...+.                  
T Consensus        79 ~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~  157 (334)
T 3iei_A           79 QLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDG  157 (334)
T ss_dssp             HHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCT
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhccccccccccccc
Confidence            3445555543 45789999999988777776642 3568888886 5555544444442100                  


Q ss_pred             --cCCCCeEEEEccCCCCC----------CCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          216 --ILTSNLALVRADVCRLP----------FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       216 --~~~~~i~~~~~d~~~lp----------~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                        ....+..++.+|+.+..          +....--++++-.++.+++..  ..+|+.+.... |+|.+++.++..
T Consensus       158 ~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~  232 (334)
T 3iei_A          158 HILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVN  232 (334)
T ss_dssp             TEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred             ccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccC
Confidence              01467899999997631          333344577778888888633  46777777766 566666667664

>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y

Probab=86.07  E-value=0.22  Score=35.95  Aligned_cols=31  Identities=23%  Similarity=0.699  Sum_probs=22.1

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      ....||.|+..-....         -.+.|.|..|+..+.
T Consensus        35 aky~CpfCgk~~vKR~---------a~GIW~C~kCg~~~A   65 (103)
T 4a17_Y           35 AKYGCPFCGKVAVKRA---------AVGIWKCKPCKKIIA   65 (103)
T ss_dssp             SCEECTTTCCEEEEEE---------ETTEEEETTTTEEEE
T ss_pred             cCCCCCCCCCceeeec---------CcceEEcCCCCCEEe
Confidence            4588999998643221         127999999998763

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=85.90  E-value=0.52  Score=42.49  Aligned_cols=102  Identities=17%  Similarity=0.221  Sum_probs=54.1

Q ss_pred             cCCCeEEEEcCCc-cHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEE
Q 021975          165 AQGGLLVDVSCGS-GLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (304)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (304)
                      .++.+|+=+|+|. |......+. .|.  +|+++|.++..++.+.+.+   +    ..+.....+..++.-.-..+|+|+
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga--~V~~~d~~~~~~~~~~~~~---g----~~~~~~~~~~~~l~~~~~~~DvVi  234 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGMGA--QVTILDVNHKRLQYLDDVF---G----GRVITLTATEANIKKSVQHADLLI  234 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHT---T----TSEEEEECCHHHHHHHHHHCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHhc---C----ceEEEecCCHHHHHHHHhCCCEEE
Confidence            3568999999963 443333333 354  9999999998777665432   1    122221111111100012578887


Q ss_pred             ecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ..-.......+..+.++..+.+|+||+++....
T Consensus       235 ~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~  267 (369)
T 2eez_A          235 GAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAV  267 (369)
T ss_dssp             ECCC-------CCSCHHHHTTSCTTCEEEECC-
T ss_pred             ECCCCCccccchhHHHHHHHhhcCCCEEEEEec
Confidence            754332111111135677888999998876543

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=85.75  E-value=3.1  Score=35.32  Aligned_cols=104  Identities=20%  Similarity=0.237  Sum_probs=66.6

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEe-CCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC--
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALD-FSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD-~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (304)
                      .++++|=.|++.|-   ....|++.|.  +|+.++ .+....+...+.++..+    .++.++.+|+.+..     +.  
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~v~~~~~~~   99 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAG----GKALTAQADVSDPAAVRRLFATA   99 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHHHHHHHH
Confidence            36788988887662   4566677776  888774 45555565555555543    67889999997742     10  


Q ss_pred             ---CCccceEEecchhccCC-----CHH--------------HHHHHHHHhcccCcEEEEEEe
Q 021975          235 ---SGFVDAVHAGAALHCWP-----SPS--------------NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 ---~~~fD~V~~~~vl~h~~-----d~~--------------~~l~~~~r~LkpgG~lvi~~~  275 (304)
                         -+..|+++.+..+....     +.+              .+++.+.+.++.+|.++...-
T Consensus       100 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  162 (267)
T 3u5t_A          100 EEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMST  162 (267)
T ss_dssp             HHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence               13689999876543321     111              245677778888888877653

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=85.73  E-value=3.8  Score=35.65  Aligned_cols=97  Identities=18%  Similarity=0.106  Sum_probs=59.2

Q ss_pred             HhhcccCCCeEEEEc-CC-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CCCCCC
Q 021975          160 EYFKSAQGGLLVDVS-CG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASG  236 (304)
Q Consensus       160 ~~l~~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~  236 (304)
                      ......++.+||-+| +| .|.....+++.. +.++++++ ++...+.+++    .+    .. .++...-.+ +.-.-.
T Consensus       146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~-~~~~~~~~~~----lG----a~-~~i~~~~~~~~~~~~~  214 (321)
T 3tqh_A          146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTA-SKRNHAFLKA----LG----AE-QCINYHEEDFLLAIST  214 (321)
T ss_dssp             HHTTCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEE-CHHHHHHHHH----HT----CS-EEEETTTSCHHHHCCS
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEe-ccchHHHHHH----cC----CC-EEEeCCCcchhhhhcc
Confidence            344556788999997 55 488888888764 34999998 5554666655    22    11 122221111 111114


Q ss_pred             ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      .+|+|+-.-.     .  ..+.+..+.|+++|+++...
T Consensus       215 g~D~v~d~~g-----~--~~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          215 PVDAVIDLVG-----G--DVGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             CEEEEEESSC-----H--HHHHHHGGGEEEEEEEEECC
T ss_pred             CCCEEEECCC-----c--HHHHHHHHhccCCCEEEEeC
Confidence            6898886432     1  23488899999999998753

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=85.61  E-value=4.3  Score=34.95  Aligned_cols=79  Identities=22%  Similarity=0.232  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (304)
                      .++++|-.|++.|   .....|++.|.  +|+.++.++..++...+.+...+. ...++.++.+|+.+..     +.   
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~  101 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGV-PAEKINAVVADVTEASGQDDIINTTL  101 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC-CGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEEecCCCCHHHHHHHHHHHH
Confidence            4567888777655   23455556666  999999998877666655544320 0116889999997642     10   


Q ss_pred             --CCccceEEecchh
Q 021975          235 --SGFVDAVHAGAAL  247 (304)
Q Consensus       235 --~~~fD~V~~~~vl  247 (304)
                        -+.+|+++.+..+
T Consensus       102 ~~~g~iD~lvnnAG~  116 (297)
T 1xhl_A          102 AKFGKIDILVNNAGA  116 (297)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HhcCCCCEEEECCCc
Confidence              1368999987654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=85.33  E-value=0.47  Score=42.63  Aligned_cols=102  Identities=19%  Similarity=0.214  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCCc-cHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          166 QGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      ++.+||=+|+|. |.....++.. |.  +|+++|.+++.++.+++....       .+..+..+..++.-.-..+|+|+.
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga--~V~v~dr~~~r~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~DvVI~  236 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGS-------RVELLYSNSAEIETAVAEADLLIG  236 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-------GSEEEECCHHHHHHHHHTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhhCc-------eeEeeeCCHHHHHHHHcCCCEEEE
Confidence            457999999964 4444444443 54  999999999888877764421       122221111111000125899987


Q ss_pred             cchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .-.......|.-+.++..+.|++||+++-..+.
T Consensus       237 ~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~  269 (361)
T 1pjc_A          237 AVLVPGRRAPILVPASLVEQMRTGSVIVDVAVD  269 (361)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred             CCCcCCCCCCeecCHHHHhhCCCCCEEEEEecC
Confidence            543332212221245567889999988766543

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=85.33  E-value=5.9  Score=33.38  Aligned_cols=79  Identities=15%  Similarity=0.153  Sum_probs=53.4

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----C-CCC
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F-ASG  236 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~-~~~  236 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.+|.++..++...+.+....  ....+.++.+|+.+..     + .-+
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~g   84 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQY--PDAILQPVVADLGTEQGCQDVIEKYP   84 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHC--TTCEEEEEECCTTSHHHHHHHHHHCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhC--CCceEEEEecCCCCHHHHHHHHHhcC
Confidence            46788888876552   4555666676  99999999988777766665543  2356788889987632     0 124


Q ss_pred             ccceEEecchhc
Q 021975          237 FVDAVHAGAALH  248 (304)
Q Consensus       237 ~fD~V~~~~vl~  248 (304)
                      ..|+++.+..+.
T Consensus        85 ~id~lv~nAg~~   96 (267)
T 3t4x_A           85 KVDILINNLGIF   96 (267)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999876543

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=85.28  E-value=2.5  Score=36.46  Aligned_cols=103  Identities=17%  Similarity=0.193  Sum_probs=65.7

Q ss_pred             CCCeEEEEcCCc----cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC-
Q 021975          166 QGGLLVDVSCGS----GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-  234 (304)
Q Consensus       166 ~~~~vLDiGcG~----G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-  234 (304)
                      .++++|-.|++.    |. ....|++.|.  +|+.+|.++...+...+..+..+     .+.++.+|+.+..     +. 
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~  101 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLG-----VKLTVPCDVSDAESVDNMFKV  101 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHT-----CCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcC-----CeEEEEcCCCCHHHHHHHHHH
Confidence            467899999753    43 4666677776  99999998765555555444332     4678899997742     10 


Q ss_pred             ----CCccceEEecchhccC---------CCHH--------------HHHHHHHHhcccCcEEEEEEe
Q 021975          235 ----SGFVDAVHAGAALHCW---------PSPS--------------NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 ----~~~fD~V~~~~vl~h~---------~d~~--------------~~l~~~~r~LkpgG~lvi~~~  275 (304)
                          -+.+|+++.+..+...         .+.+              .+++.+.+.++.+|.++....
T Consensus       102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS  169 (296)
T 3k31_A          102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY  169 (296)
T ss_dssp             HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence                1468999987654321         1111              235566667778888887654

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=85.21  E-value=3.6  Score=34.69  Aligned_cols=106  Identities=21%  Similarity=0.257  Sum_probs=70.2

Q ss_pred             CCCeEEEEcCC----ccH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----C--
Q 021975          166 QGGLLVDVSCG----SGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F--  233 (304)
Q Consensus       166 ~~~~vLDiGcG----~G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~--  233 (304)
                      +++++|--|++    .|. ....|++.|.  +|+.+|.++...+.+.+.++..+   ..++.++.+|+.+..     +  
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~   79 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA--KLVFTYRKERSRKELEKLLEQLN---QPEAHLYQIDVQSDEEVINGFEQ   79 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHGGGT---CSSCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CCcEEEEEccCCCHHHHHHHHHH
Confidence            57889999853    444 4667777777  99999999888888877776654   357889999987632     0  


Q ss_pred             ---CCCccceEEecchhccC---------CCHHH--------------HHHHHHHhcccCcEEEEEEeC
Q 021975          234 ---ASGFVDAVHAGAALHCW---------PSPSN--------------AVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       234 ---~~~~fD~V~~~~vl~h~---------~d~~~--------------~l~~~~r~LkpgG~lvi~~~~  276 (304)
                         .-+..|+++.+..+.+.         .+.+.              ........++.+|.++.....
T Consensus        80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~  148 (256)
T 4fs3_A           80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYL  148 (256)
T ss_dssp             HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECG
T ss_pred             HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecc
Confidence               12478988876543211         01111              224455677889988876643

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=85.18  E-value=3.3  Score=38.01  Aligned_cols=98  Identities=20%  Similarity=0.166  Sum_probs=62.4

Q ss_pred             hcccCCCeEEEEcC-C-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc--cCCCC------
Q 021975          162 FKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA--DVCRL------  231 (304)
Q Consensus       162 l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~--d~~~l------  231 (304)
                      ....++.+||-+|+ | .|.....+++.. +.++++++.+++.++.+++.    +    ....+-..  +....      
T Consensus       216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~~l----G----a~~~i~~~~~~~~~~~~~~~~  286 (447)
T 4a0s_A          216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVRAL----G----CDLVINRAELGITDDIADDPR  286 (447)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----CCCEEEHHHHTCCTTGGGCHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C----CCEEEeccccccccccccccc
Confidence            34557889999997 3 477777777763 34999999999888887651    2    11111111  11000      


Q ss_pred             --------------CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          232 --------------PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       232 --------------p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                                    ......+|+|+....-       ..+....+.|++||+++....
T Consensus       287 ~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~-------~~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          287 RVVETGRKLAKLVVEKAGREPDIVFEHTGR-------VTFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSEEEECSCH-------HHHHHHHHHSCTTCEEEESCC
T ss_pred             ccchhhhHHHHHHHHHhCCCceEEEECCCc-------hHHHHHHHHHhcCCEEEEEec
Confidence                          0002468998875431       357888899999999988653

>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A

Probab=84.94  E-value=0.64  Score=37.42  Aligned_cols=40  Identities=20%  Similarity=0.384  Sum_probs=25.4

Q ss_pred             CCeeeccCCCccccc-cCCCCccccccccCceeeCCCCccc
Q 021975           58 GDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        58 ~~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ...+.||.|+..-.. ...+.-..++-+...+.|..||+.+
T Consensus       135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w  175 (178)
T 3po3_S          135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW  175 (178)
T ss_dssp             BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred             cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence            457899999985321 1111122334455789999999976

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=84.90  E-value=0.35  Score=43.85  Aligned_cols=97  Identities=20%  Similarity=0.190  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCc-cHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC--C------------
Q 021975          166 QGGLLVDVSCGS-GLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--C------------  229 (304)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~------------  229 (304)
                      ++.+|+=+|+|. |.....++. .|.  +|+++|.++..++.+.+.          +..++..+.  .            
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~l----------Ga~~~~l~~~~~~~~gya~~~~~~  250 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA--KTTGYDVRPEVAEQVRSV----------GAQWLDLGIDAAGEGGYARELSEA  250 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC--EEEEECSSGGGHHHHHHT----------TCEECCCC-------------CHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHc----------CCeEEeccccccccccchhhhhHH
Confidence            578999999985 555444444 354  999999999887777651          223322110  0            


Q ss_pred             -------CCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          230 -------RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       230 -------~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                             .+.-.-...|+|+....+..-..|.-+-+++.+.+|||++++=..
T Consensus       251 ~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          251 ERAQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             HHhhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence                   000001468999875322211122223478899999988766543

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=84.60  E-value=2.6  Score=33.03  Aligned_cols=32  Identities=9%  Similarity=0.166  Sum_probs=29.9

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeC
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF  198 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~  198 (304)
                      .+-|||+|-|+|..-.+|.+..|+..++++|-
T Consensus        41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR   72 (174)
T 3iht_A           41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFER   72 (174)
T ss_dssp             CSCEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred             CCceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence            56899999999999999999999999999996

>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=84.52  E-value=1.1  Score=33.19  Aligned_cols=43  Identities=14%  Similarity=0.243  Sum_probs=25.9

Q ss_pred             CcCCeeeccCCCccccc-cCCCCccccccccCceeeCCCCcccc
Q 021975           56 LEGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        56 ~~~~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      +......||.|+..-.. ...+.-..++.+...++|.+|++.+.
T Consensus        68 lp~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~  111 (113)
T 3h0g_I           68 LPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFE  111 (113)
T ss_dssp             SCBCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred             CCCcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence            33344889999995211 11111223444556899999999863

>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*

Probab=84.14  E-value=0.31  Score=33.08  Aligned_cols=31  Identities=29%  Similarity=0.678  Sum_probs=22.2

Q ss_pred             CCeeeccCCCcc-ccccCCCCccccccccCceeeCCCCcccc
Q 021975           58 GDLFSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        58 ~~~l~CP~C~~~-l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      -....||.|+.. +.+..          .+.+.|..|+..+.
T Consensus        25 ~~ky~C~fCgk~~vkR~a----------~GIW~C~~C~~~~A   56 (73)
T 1ffk_W           25 KKKYKCPVCGFPKLKRAS----------TSIWVCGHCGYKIA   56 (73)
T ss_pred             ccCccCCCCCCceeEEEE----------eEEEECCCCCcEEE
Confidence            345889999984 33322          27899999998763

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4

Probab=84.09  E-value=1.2  Score=31.03  Aligned_cols=35  Identities=20%  Similarity=0.494  Sum_probs=22.9

Q ss_pred             cCCeee-ccCCCccccccCCCCccccccccCceeeCCCCccccCC
Q 021975           57 EGDLFS-CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (304)
Q Consensus        57 ~~~~l~-CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  100 (304)
                      ....+. ||.|+..+.....         ...+.|+.|++.|=..
T Consensus        21 ~~~~~~wCP~C~~~~~~~~~---------~~~v~C~~C~~~FC~~   56 (86)
T 2ct7_A           21 RDPKFLWCAQCSFGFIYERE---------QLEATCPQCHQTFCVR   56 (86)
T ss_dssp             SCCCEECCSSSCCCEECCCS---------CSCEECTTTCCEECSS
T ss_pred             cCCCEeECcCCCchheecCC---------CCceEeCCCCCccccc
Confidence            344455 9999987754321         1457899999887443

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=84.05  E-value=4.7  Score=34.14  Aligned_cols=78  Identities=21%  Similarity=0.291  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCC------------HHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFS------------ENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s------------~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      .++++|-.|++.|   .....|++.|.  +|+.+|.+            .+.++...+.++..+    .++.++.+|+.+
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~   85 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG----SRIVARQADVRD   85 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT----CCEEEEECCTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhcC----CeEEEEeCCCCC
Confidence            4678998887765   34566666776  99999987            666666655555543    679999999977


Q ss_pred             CC-----CC-----CCccceEEecchhcc
Q 021975          231 LP-----FA-----SGFVDAVHAGAALHC  249 (304)
Q Consensus       231 lp-----~~-----~~~fD~V~~~~vl~h  249 (304)
                      ..     +.     -+..|+++.+..+..
T Consensus        86 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~  114 (278)
T 3sx2_A           86 RESLSAALQAGLDELGRLDIVVANAGIAP  114 (278)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            42     11     136899998766543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=84.00  E-value=7  Score=35.65  Aligned_cols=94  Identities=14%  Similarity=0.167  Sum_probs=62.8

Q ss_pred             CCeEEEEcCCc-cHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----CCCCccce
Q 021975          167 GGLLVDVSCGS-GLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA  240 (304)
Q Consensus       167 ~~~vLDiGcG~-G~~-~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~  240 (304)
                      ...|+=+|+|. |.. ...|.+.+.  .|+++|.+++.++.+++          .++.++.+|..+..    ..-...|+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~--~vvvId~d~~~v~~~~~----------~g~~vi~GDat~~~~L~~agi~~A~~   71 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV--KMVVLDHDPDHIETLRK----------FGMKVFYGDATRMDLLESAGAAKAEV   71 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEECCHHHHHHHHH----------TTCCCEESCTTCHHHHHHTTTTTCSE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHh----------CCCeEEEcCCCCHHHHHhcCCCccCE
Confidence            35688888864 433 333444455  99999999999988876          45678899987742    22346787


Q ss_pred             EEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEeCC
Q 021975          241 VHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       241 V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      |++..     ++..  ..+....+.+.|+..++......
T Consensus        72 viv~~-----~~~~~n~~i~~~ar~~~p~~~Iiara~~~  105 (413)
T 3l9w_A           72 LINAI-----DDPQTNLQLTEMVKEHFPHLQIIARARDV  105 (413)
T ss_dssp             EEECC-----SSHHHHHHHHHHHHHHCTTCEEEEEESSH
T ss_pred             EEECC-----CChHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            77643     3443  34566777888888777766543

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=83.98  E-value=6  Score=32.38  Aligned_cols=76  Identities=20%  Similarity=0.149  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCccHH----HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCe-EEEEccCC-CCCCCCCccc
Q 021975          166 QGGLLVDVSCGSGLF----SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVC-RLPFASGFVD  239 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~----~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i-~~~~~d~~-~lp~~~~~fD  239 (304)
                      .+.+||=.|+. |..    ...|.+.+.  +|++++-++...+....          .++ .++.+|+. .+.-.-+.+|
T Consensus        20 ~~~~ilVtGat-G~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~~~D   86 (236)
T 3e8x_A           20 QGMRVLVVGAN-GKVARYLLSELKNKGH--EPVAMVRNEEQGPELRE----------RGASDIVVANLEEDFSHAFASID   86 (236)
T ss_dssp             -CCEEEEETTT-SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHH----------TTCSEEEECCTTSCCGGGGTTCS
T ss_pred             CCCeEEEECCC-ChHHHHHHHHHHhCCC--eEEEEECChHHHHHHHh----------CCCceEEEcccHHHHHHHHcCCC
Confidence            46789988864 433    444555565  99999998876554433          367 88999986 2211123689


Q ss_pred             eEEecchhccCCCHH
Q 021975          240 AVHAGAALHCWPSPS  254 (304)
Q Consensus       240 ~V~~~~vl~h~~d~~  254 (304)
                      +|+.........++.
T Consensus        87 ~vi~~ag~~~~~~~~  101 (236)
T 3e8x_A           87 AVVFAAGSGPHTGAD  101 (236)
T ss_dssp             EEEECCCCCTTSCHH
T ss_pred             EEEECCCCCCCCCcc
Confidence            999876654434443

>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=83.91  E-value=0.87  Score=33.72  Aligned_cols=39  Identities=18%  Similarity=0.303  Sum_probs=27.4

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCC
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g  102 (304)
                      .+.-||.|++-|......+.     -...+.|++|+..+.+.+.
T Consensus         3 ~m~FCp~Cgn~L~~~~~~~~-----~~~~~~C~~C~y~~~~~~~   41 (113)
T 3h0g_I            3 NFQYCIECNNMLYPREDKVD-----RVLRLACRNCDYSEIAATS   41 (113)
T ss_dssp             CCCCCSSSCCCCEECCCTTT-----CCCCEECSSSCCEECCSCS
T ss_pred             cceeCcCCCCEeeEcccCCC-----CeeEEECCCCCCeEEcCCC
Confidence            35679999999877553210     1147999999998877654

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=83.84  E-value=4.9  Score=33.65  Aligned_cols=104  Identities=9%  Similarity=0.098  Sum_probs=64.5

Q ss_pred             cCCCeEEEEcCC--cc--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC
Q 021975          165 AQGGLLVDVSCG--SG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA  234 (304)
Q Consensus       165 ~~~~~vLDiGcG--~G--~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~  234 (304)
                      .++++||-.|++  .|  . ....|++.|.  +|+.++.+....+.+++..+..     .++.++.+|+.+..     +.
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~   84 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEF-----GSELVFPCDVADDAQIDALFA   84 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHT-----TCCCEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHc-----CCcEEEECCCCCHHHHHHHHH
Confidence            457899999975  33  2 3455666666  9999998865555554443333     34788999997742     00


Q ss_pred             -----CCccceEEecchhccC----------CCHH--------------HHHHHHHHhcccCcEEEEEEe
Q 021975          235 -----SGFVDAVHAGAALHCW----------PSPS--------------NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 -----~~~fD~V~~~~vl~h~----------~d~~--------------~~l~~~~r~LkpgG~lvi~~~  275 (304)
                           -+..|+++.+..+.+.          .+..              .+++.+.+.++++|.++....
T Consensus        85 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  154 (271)
T 3ek2_A           85 SLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY  154 (271)
T ss_dssp             HHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             HHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence                 1468999987654321          1121              235566667777888776653

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=83.47  E-value=5.9  Score=33.55  Aligned_cols=76  Identities=24%  Similarity=0.363  Sum_probs=57.7

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----C----
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F----  233 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~----  233 (304)
                      +++++|--|.+.|-   ....|++.|.  +|+.+|.+++.++...+.++..+    .++.++.+|+.+..     +    
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g----~~~~~~~~Dvt~~~~v~~~~~~~~   79 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMG----KEVLGVKADVSKKKDVEEFVRRTF   79 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHH
Confidence            57788888987773   4556666776  99999999999988888887765    68899999997742     0    


Q ss_pred             -CCCccceEEecchh
Q 021975          234 -ASGFVDAVHAGAAL  247 (304)
Q Consensus       234 -~~~~fD~V~~~~vl  247 (304)
                       .-+..|+++.+..+
T Consensus        80 ~~~G~iDiLVNNAGi   94 (254)
T 4fn4_A           80 ETYSRIDVLCNNAGI   94 (254)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCcc
Confidence             01578999987653

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=83.20  E-value=5.8  Score=33.01  Aligned_cols=76  Identities=22%  Similarity=0.247  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeC-CHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC--
Q 021975          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDF-SENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~-s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (304)
                      .+++||=.|++.|   .....|++.+.  +|+.++. ++...+...+.++..+    .++.++.+|+.+..     +.  
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~~~~~   79 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG----GEAIAVKGDVTVESDVINLVQSA   79 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT----CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhcC----CceEEEECCCCCHHHHHHHHHHH
Confidence            3567887776544   23445555665  9999998 7766665555554433    56888999987632     10  


Q ss_pred             ---CCccceEEecchh
Q 021975          235 ---SGFVDAVHAGAAL  247 (304)
Q Consensus       235 ---~~~fD~V~~~~vl  247 (304)
                         -+.+|+|+....+
T Consensus        80 ~~~~g~id~li~~Ag~   95 (261)
T 1gee_A           80 IKEFGKLDVMINNAGL   95 (261)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence               1268999887554

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=83.14  E-value=19  Score=30.59  Aligned_cols=61  Identities=11%  Similarity=0.071  Sum_probs=42.1

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEe-CCHHHHHHHHHHHH-hcCccCCCCeEEEEccCCCCC
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALD-FSENMLRQCYDFIK-QDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD-~s~~~~~~a~~~~~-~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.++ .++..++.+.+.+. ..+    .++.++.+|+.+..
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~Dl~~~~   73 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSAAEANALSATLNARRP----NSAITVQADLSNVA   73 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHST----TCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCHHHHHHHHHHHhhhcC----CeeEEEEeecCCcc
Confidence            35678877776552   3455556666  999999 99877776666554 222    57889999997643

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=83.13  E-value=7.4  Score=33.02  Aligned_cols=104  Identities=20%  Similarity=0.309  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHH-HHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC--
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSEN-MLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~-~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.++.+.. ..+...+.+...+    .++.++.+|+.+..     +.  
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~  101 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG----SDAACVKANVGVVEDIVRMFEEA  101 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHH
Confidence            35678888776552   3455555665  9999988754 3344334344333    57888999987632     10  


Q ss_pred             ---CCccceEEecchhccCC-----CHH--------------HHHHHHHHhcccCcEEEEEEe
Q 021975          235 ---SGFVDAVHAGAALHCWP-----SPS--------------NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 ---~~~fD~V~~~~vl~h~~-----d~~--------------~~l~~~~r~LkpgG~lvi~~~  275 (304)
                         -+.+|+++.+..+.+..     +++              .+++.+.+.|+.+|.++...-
T Consensus       102 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          102 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence               13689999876543321     111              234666777777788776653

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=83.02  E-value=9.8  Score=31.38  Aligned_cols=75  Identities=16%  Similarity=0.236  Sum_probs=50.6

Q ss_pred             cCCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----C-CC
Q 021975          165 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F-AS  235 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~-~~  235 (304)
                      .++++||=.|++.|-   ....|++.|.  +|+.++.++..++...+.+       ..++.++.+|+.+..     + ..
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~   82 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNAL-------KDNYTIEVCNLANKEECSNLISKT   82 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CSSEEEEECCTTSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHh-------ccCccEEEcCCCCHHHHHHHHHhc
Confidence            357789988876652   4455666666  9999999988777665543       246888899987632     1 12


Q ss_pred             CccceEEecchhc
Q 021975          236 GFVDAVHAGAALH  248 (304)
Q Consensus       236 ~~fD~V~~~~vl~  248 (304)
                      +..|+++.+..+.
T Consensus        83 ~~id~li~~Ag~~   95 (249)
T 3f9i_A           83 SNLDILVCNAGIT   95 (249)
T ss_dssp             SCCSEEEECCC--
T ss_pred             CCCCEEEECCCCC
Confidence            4689999876543

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=82.96  E-value=0.84  Score=29.95  Aligned_cols=31  Identities=16%  Similarity=0.449  Sum_probs=23.3

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~   99 (304)
                      ..+.|..|+.......          ...++|+.||+....
T Consensus        20 v~Y~C~~Cg~~~~l~~----------~~~iRC~~CG~RILy   50 (63)
T 3h0g_L           20 MIYLCADCGARNTIQA----------KEVIRCRECGHRVMY   50 (63)
T ss_dssp             CCCBCSSSCCBCCCCS----------SSCCCCSSSCCCCCB
T ss_pred             eEEECCCCCCeeecCC----------CCceECCCCCcEEEE
Confidence            4589999999875532          157999999987533

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=82.90  E-value=0.68  Score=41.96  Aligned_cols=43  Identities=21%  Similarity=0.087  Sum_probs=30.7

Q ss_pred             cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021975          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (304)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~  208 (304)
                      .++.+|+=+|+|. |.....+++.. +.+|+++|.++...+.+++
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          170 VPPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVES  213 (384)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence            3688999999985 55555555543 2489999999876666654

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=82.74  E-value=3  Score=35.30  Aligned_cols=78  Identities=19%  Similarity=0.169  Sum_probs=48.8

Q ss_pred             CCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC----
Q 021975          167 GGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA----  234 (304)
Q Consensus       167 ~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----  234 (304)
                      ++++|-.|++.|   .....|++.|.  +|+.++.++..++...+.+..... ...++.++.+|+.+..     +.    
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (278)
T 1spx_A            6 EKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGV-SEQNVNSVVADVTTDAGQDEILSTTLG   82 (278)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC-CGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccc-CCCceeEEecccCCHHHHHHHHHHHHH
Confidence            567887777654   23455556666  999999998877666554421110 1246888999987632     10    


Q ss_pred             -CCccceEEecchh
Q 021975          235 -SGFVDAVHAGAAL  247 (304)
Q Consensus       235 -~~~fD~V~~~~vl  247 (304)
                       -+.+|+++.+..+
T Consensus        83 ~~g~id~lv~~Ag~   96 (278)
T 1spx_A           83 KFGKLDILVNNAGA   96 (278)
T ss_dssp             HHSCCCEEEECCC-
T ss_pred             HcCCCCEEEECCCC
Confidence             1268999887654

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=82.49  E-value=3  Score=37.25  Aligned_cols=95  Identities=14%  Similarity=0.087  Sum_probs=57.7

Q ss_pred             ccCCCeEEEEc-CC-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCcc
Q 021975          164 SAQGGLLVDVS-CG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFV  238 (304)
Q Consensus       164 ~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~f  238 (304)
                      ..++.+||-+| +| .|.....+++.. +.+|++++ ++...+.+++    .+    .. .++..+-.+..   .....+
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~~~----lG----a~-~v~~~~~~~~~~~~~~~~g~  249 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELVRK----LG----AD-DVIDYKSGSVEEQLKSLKPF  249 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHH----TT----CS-EEEETTSSCHHHHHHTSCCB
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHHHH----cC----CC-EEEECCchHHHHHHhhcCCC
Confidence            45688999999 34 577777777763 34999999 6666666644    22    11 12221111110   011468


Q ss_pred             ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      |+|+..-     ..+...+....+.|++||+++...
T Consensus       250 D~vid~~-----g~~~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          250 DFILDNV-----GGSTETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             SEEEESS-----CTTHHHHGGGGBCSSSCCEEEESC
T ss_pred             CEEEECC-----CChhhhhHHHHHhhcCCcEEEEeC
Confidence            9887643     233345677788999999988754

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=82.32  E-value=5.9  Score=35.32  Aligned_cols=93  Identities=8%  Similarity=0.027  Sum_probs=58.9

Q ss_pred             cCCCeEEEEcCC--ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CCCCc
Q 021975          165 AQGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASGF  237 (304)
Q Consensus       165 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~~  237 (304)
                      .++.+||-+|++  .|.....+++.. +.+|+++. +++-.+.+++.    +    .. .++...-.++.     ...+.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~~l----G----a~-~vi~~~~~~~~~~v~~~t~g~  231 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAKSR----G----AE-EVFDYRAPNLAQTIRTYTKNN  231 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHT----T----CS-EEEETTSTTHHHHHHHHTTTC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHHHc----C----Cc-EEEECCCchHHHHHHHHccCC
Confidence            568899999983  688888888774 34899885 78777777652    2    11 22222111110     11245


Q ss_pred             cceEEecchhccCCCHHHHHHHHHHhc-ccCcEEEEEE
Q 021975          238 VDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTT  274 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~L-kpgG~lvi~~  274 (304)
                      +|+|+-.-     .. ...+....+.| ++||+++...
T Consensus       232 ~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          232 LRYALDCI-----TN-VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCEEEESS-----CS-HHHHHHHHHHSCTTCEEEEESS
T ss_pred             ccEEEECC-----Cc-hHHHHHHHHHhhcCCCEEEEEe
Confidence            89888643     22 24577788888 6999988754

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=82.18  E-value=16  Score=30.77  Aligned_cols=76  Identities=20%  Similarity=0.246  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CCCCc
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASGF  237 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~~  237 (304)
                      +++++|--|.+.|-   ....|++.|.  +|+..|.+..  +.+.+.++..+    .++.++.+|+.+..     +..+.
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~--~~~~~~~~~~g----~~~~~~~~Dv~d~~~v~~~~~~g~   79 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAP--DETLDIIAKDG----GNASALLIDFADPLAAKDSFTDAG   79 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCC--HHHHHHHHHTT----CCEEEEECCTTSTTTTTTSSTTTC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcH--HHHHHHHHHhC----CcEEEEEccCCCHHHHHHHHHhCC
Confidence            47788888877763   4566677776  9999998742  22333344433    67889999986632     44578


Q ss_pred             cceEEecchhcc
Q 021975          238 VDAVHAGAALHC  249 (304)
Q Consensus       238 fD~V~~~~vl~h  249 (304)
                      +|+++.+..+.+
T Consensus        80 iDiLVNNAGi~~   91 (247)
T 4hp8_A           80 FDILVNNAGIIR   91 (247)
T ss_dssp             CCEEEECCCCCC
T ss_pred             CCEEEECCCCCC
Confidence            999998765443

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=82.15  E-value=4.7  Score=34.60  Aligned_cols=101  Identities=19%  Similarity=0.215  Sum_probs=68.5

Q ss_pred             cCCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---------
Q 021975          165 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------  232 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------  232 (304)
                      .+++++|--|.+.|-   ....|++.|.  +|+.+|.+++.++.+.+.+   +    .+...+.+|+.+..         
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~~---g----~~~~~~~~Dv~~~~~v~~~~~~~   97 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA--RVFITGRRKDVLDAAIAEI---G----GGAVGIQADSANLAELDRLYEKV   97 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH---C----TTCEEEECCTTCHHHHHHHHHHH
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHc---C----CCeEEEEecCCCHHHHHHHHHHH
Confidence            357888988988773   4566677776  9999999998877665543   2    56778899987742         


Q ss_pred             -CCCCccceEEecchhccCC-----CHH--------------HHHHHHHHhcccCcEEEEEE
Q 021975          233 -FASGFVDAVHAGAALHCWP-----SPS--------------NAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~-----d~~--------------~~l~~~~r~LkpgG~lvi~~  274 (304)
                       -.-+..|+++.+..+....     +++              ...+.+.+.|+.+|.++...
T Consensus        98 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis  159 (273)
T 4fgs_A           98 KAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG  159 (273)
T ss_dssp             HHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence             0124689998876543321     111              24577778888888877654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=81.92  E-value=0.57  Score=42.79  Aligned_cols=43  Identities=21%  Similarity=0.110  Sum_probs=31.0

Q ss_pred             cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 021975          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (304)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~  208 (304)
                      .++.+|+=+|+|. |.....+++.. +.+|+++|.++...+.+++
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~~~~~~~~~  213 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS  213 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCGGGHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH
Confidence            3578999999985 55555555543 2499999999987776644

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=81.73  E-value=7.6  Score=33.00  Aligned_cols=75  Identities=24%  Similarity=0.297  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (304)
                      .++++|-.|++.|   .....|++.|.  +|+.+|.++..++...+.+       ..++.++.+|+.+..     +.   
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~~~~   98 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKI-------GCGAAACRVDVSDEQQIIAMVDACV   98 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHH-------CSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHc-------CCcceEEEecCCCHHHHHHHHHHHH
Confidence            4678888887766   24566667776  9999999988776665543       256888999997742     00   


Q ss_pred             --CCccceEEecchhcc
Q 021975          235 --SGFVDAVHAGAALHC  249 (304)
Q Consensus       235 --~~~fD~V~~~~vl~h  249 (304)
                        -+..|+++.+..+.+
T Consensus        99 ~~~g~iD~lvnnAg~~~  115 (277)
T 3gvc_A           99 AAFGGVDKLVANAGVVH  115 (277)
T ss_dssp             HHHSSCCEEEECCCCCC
T ss_pred             HHcCCCCEEEECCCCCC
Confidence              136899998766543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=81.56  E-value=4.3  Score=34.01  Aligned_cols=73  Identities=26%  Similarity=0.311  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (304)
                      .++++|-.|++.|   .....|++.|.  +|+.+|.+....+...+.+       ..++.++.+|+.+..     +.   
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~   77 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEI-------GPAAYAVQMDVTRQDSIDAAIAATV   77 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCCceEEEeeCCCHHHHHHHHHHHH
Confidence            4678898887665   24556666676  9999999988766655543       256789999997742     10   


Q ss_pred             --CCccceEEecchh
Q 021975          235 --SGFVDAVHAGAAL  247 (304)
Q Consensus       235 --~~~fD~V~~~~vl  247 (304)
                        -+.+|+++.+..+
T Consensus        78 ~~~g~id~lv~~Ag~   92 (259)
T 4e6p_A           78 EHAGGLDILVNNAAL   92 (259)
T ss_dssp             HHSSSCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCc
Confidence              1368999987654

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=81.46  E-value=0.94  Score=27.59  Aligned_cols=33  Identities=18%  Similarity=0.552  Sum_probs=20.6

Q ss_pred             CCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      |..+.|-.||..+...+....       ...+|+-||..-
T Consensus         1 ~~iY~C~rCg~~fs~~el~~l-------P~IrCpyCGyri   33 (48)
T 4ayb_P            1 MAVYRCGKCWKTFTDEQLKVL-------PGVRCPYCGYKI   33 (48)
T ss_dssp             ----CCCCTTTTCCCCCSCCC-------SSSCCTTTCCSC
T ss_pred             CcEEEeeccCCCccHHHHhhC-------CCcccCccCcEE
Confidence            346789999998766543211       567999998653

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=81.38  E-value=14  Score=30.15  Aligned_cols=77  Identities=21%  Similarity=0.172  Sum_probs=52.7

Q ss_pred             CCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH-hcCccCCCCeEEEEccCCCCC-----CCC--
Q 021975          167 GGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK-QDNTILTSNLALVRADVCRLP-----FAS--  235 (304)
Q Consensus       167 ~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-~~~~~~~~~i~~~~~d~~~lp-----~~~--  235 (304)
                      ++++|=.|++.|   .....|++.|.  +|+.++.+.+.++...+.+. ..    ..++.++.+|+.+..     +..  
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~   75 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ----GVEVFYHHLDVSKAESVEEFSKKVL   75 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH----CCCEEEEECCTTCHHHHHHHCC-HH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc----CCeEEEEEeccCCHHHHHHHHHHHH
Confidence            457888887655   24555666676  89999999887777666554 32    367899999997742     111  


Q ss_pred             ---CccceEEecchhcc
Q 021975          236 ---GFVDAVHAGAALHC  249 (304)
Q Consensus       236 ---~~fD~V~~~~vl~h  249 (304)
                         +..|+++.+..+.+
T Consensus        76 ~~~g~id~li~~Ag~~~   92 (235)
T 3l77_A           76 ERFGDVDVVVANAGLGY   92 (235)
T ss_dssp             HHHSSCSEEEECCCCCC
T ss_pred             HhcCCCCEEEECCcccc
Confidence               36899998766543

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=81.27  E-value=0.89  Score=27.83  Aligned_cols=37  Identities=11%  Similarity=0.319  Sum_probs=20.0

Q ss_pred             CCeeeccCCCcccccc-CCCCccccccccCceeeCCCCcc
Q 021975           58 GDLFSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKT   96 (304)
Q Consensus        58 ~~~l~CP~C~~~l~~~-~~~~~~~~~i~~~~l~C~~C~~~   96 (304)
                      |..++|++||--..-. +.. ..... ....++|+.||..
T Consensus         2 m~~y~C~vCGyvyd~~~Gd~-t~f~~-lP~dw~CP~Cg~~   39 (46)
T 6rxn_A            2 MQKYVCNVCGYEYDPAEHDN-VPFDQ-LPDDWCCPVCGVS   39 (46)
T ss_dssp             CCCEEETTTCCEECGGGGTT-CCGGG-SCTTCBCTTTCCB
T ss_pred             CCEEECCCCCeEEeCCcCCC-cchhh-CCCCCcCcCCCCc
Confidence            5678999999743210 100 00001 1146899999863

>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}

Probab=81.24  E-value=1.1  Score=34.35  Aligned_cols=40  Identities=15%  Similarity=0.253  Sum_probs=31.5

Q ss_pred             CCCCccceEEecchhc--cCCCHHHHHHHHHHhcccCcEEEE
Q 021975          233 FASGFVDAVHAGAALH--CWPSPSNAVAEISRILRSGGVFVG  272 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~--h~~d~~~~l~~~~r~LkpgG~lvi  272 (304)
                      ++..+||.|+...--+  +..-|..++..+...|||||.|..
T Consensus        55 Lp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g   96 (136)
T 2km1_A           55 LENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG   96 (136)
T ss_dssp             CCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred             CCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence            5588999998854322  234458899999999999999986

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=81.24  E-value=5.1  Score=33.72  Aligned_cols=104  Identities=14%  Similarity=0.155  Sum_probs=63.6

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCC---HHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS---ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s---~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~  234 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.++.+   .+.++...+.++..+    .++.++.+|+.+..     +.
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~   83 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQG----AKVALYQSDLSNEEEVAKLFD   83 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTTT----CEEEEEECCCCSHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHHHH
Confidence            46788988877652   3444555565  89998754   344555555454433    67899999997742     10


Q ss_pred             -----CCccceEEecchhccCC-----CHH--------------HHHHHHHHhcccCcEEEEEEe
Q 021975          235 -----SGFVDAVHAGAALHCWP-----SPS--------------NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       235 -----~~~fD~V~~~~vl~h~~-----d~~--------------~~l~~~~r~LkpgG~lvi~~~  275 (304)
                           -+..|+++.+..+....     +++              .+.+.+.+.|+++|.++...-
T Consensus        84 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS  148 (262)
T 3ksu_A           84 FAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIAT  148 (262)
T ss_dssp             HHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEec
Confidence                 14689999876543221     111              235566667777888776543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=80.79  E-value=9.7  Score=31.92  Aligned_cols=76  Identities=20%  Similarity=0.213  Sum_probs=56.0

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.+|.+++.++...+.+...+    .++.++.+|+.+..     +.   
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~   83 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTG----RRALSVGTDITDDAQVAHLVDETM   83 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHHHHHHHH
Confidence            46789999987763   4566677776  99999999988887777766544    67899999998742     10   


Q ss_pred             --CCccceEEecchh
Q 021975          235 --SGFVDAVHAGAAL  247 (304)
Q Consensus       235 --~~~fD~V~~~~vl  247 (304)
                        -+..|+++.+...
T Consensus        84 ~~~g~id~lv~nAg~   98 (264)
T 3ucx_A           84 KAYGRVDVVINNAFR   98 (264)
T ss_dssp             HHTSCCSEEEECCCS
T ss_pred             HHcCCCcEEEECCCC
Confidence              1468999987643

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=80.75  E-value=7.6  Score=32.16  Aligned_cols=76  Identities=21%  Similarity=0.269  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC---
Q 021975          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (304)
                      .++++|=.|++.|   .+...|++.|.  +|+.+|.++..++...+.++..+    .++.++.+|+.+..     +.   
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~   81 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVADG----GTAISVAVDVSDPESAKAMADRTL   81 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHH
Confidence            4678898887765   24566666676  99999999988888777766544    67889999997742     00   


Q ss_pred             --CCccceEEecchh
Q 021975          235 --SGFVDAVHAGAAL  247 (304)
Q Consensus       235 --~~~fD~V~~~~vl  247 (304)
                        -+.+|+++.+..+
T Consensus        82 ~~~g~id~li~~Ag~   96 (253)
T 3qiv_A           82 AEFGGIDYLVNNAAI   96 (253)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCc
Confidence              1368999987654

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=80.59  E-value=9.1  Score=32.53  Aligned_cols=76  Identities=14%  Similarity=0.138  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCH-HHHHHHHHHHH-hcCccCCCCeEEEEccCCC----CC----
Q 021975          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSE-NMLRQCYDFIK-QDNTILTSNLALVRADVCR----LP----  232 (304)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~-~~~~~a~~~~~-~~~~~~~~~i~~~~~d~~~----lp----  232 (304)
                      .++++|-.|++.|   .....|++.|.  +|+.++.++ ..++...+.+. ..    ..++.++.+|+.+    ..    
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~~Dv~~~~~~~~~v~~   95 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNSAEAAVSLADELNKER----SNTAVVCQADLTNSNVLPASCEE   95 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSCHHHHHHHHHHHHHHS----TTCEEEEECCCSCSTTHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhhc----CCceEEEEeecCCccCCHHHHHH
Confidence            3567888887655   24555666676  999999887 65555555443 22    2578899999987    21    


Q ss_pred             -CC-----CCccceEEecchh
Q 021975          233 -FA-----SGFVDAVHAGAAL  247 (304)
Q Consensus       233 -~~-----~~~fD~V~~~~vl  247 (304)
                       +.     -+.+|+++.+..+
T Consensus        96 ~~~~~~~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A           96 IINSCFRAFGRCDVLVNNASA  116 (288)
T ss_dssp             HHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHhcCCCCEEEECCCC
Confidence             00     1368999987654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=80.55  E-value=15  Score=26.92  Aligned_cols=90  Identities=10%  Similarity=0.189  Sum_probs=52.6

Q ss_pred             CCeEEEEcCCc-cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----CCCCccce
Q 021975          167 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA  240 (304)
Q Consensus       167 ~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~  240 (304)
                      +.+|+=+|+|. |. +...|.+.+.  +|+++|.+++.++..++.         .++.++.+|..+..    ..-..+|+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~--~v~~~d~~~~~~~~~~~~---------~~~~~~~~d~~~~~~l~~~~~~~~d~   72 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAE---------IDALVINGDCTKIKTLEDAGIEDADM   72 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH---------CSSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHh---------cCcEEEEcCCCCHHHHHHcCcccCCE
Confidence            35788888864 33 2344445555  899999998876655432         23556777764321    11235788


Q ss_pred             EEecchhccCCCH--HHHHHHHHHhcccCcEEEEE
Q 021975          241 VHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       241 V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~  273 (304)
                      |+..-     ++.  ...+.++.+.++++ .++..
T Consensus        73 vi~~~-----~~~~~~~~~~~~~~~~~~~-~ii~~  101 (140)
T 1lss_A           73 YIAVT-----GKEEVNLMSSLLAKSYGIN-KTIAR  101 (140)
T ss_dssp             EEECC-----SCHHHHHHHHHHHHHTTCC-CEEEE
T ss_pred             EEEee-----CCchHHHHHHHHHHHcCCC-EEEEE
Confidence            87753     222  23455666677775 44443

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=80.45  E-value=24  Score=30.63  Aligned_cols=60  Identities=12%  Similarity=0.076  Sum_probs=41.3

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEe-CCHHHHHHHHHHHH-hcCccCCCCeEEEEccCCCC
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALD-FSENMLRQCYDFIK-QDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD-~s~~~~~~a~~~~~-~~~~~~~~~i~~~~~d~~~l  231 (304)
                      .++++|-.|++.|-   ....|++.|.  +|+.++ .++..++.+.+.+. ..    ..++.++.+|+.+.
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~Dl~d~  109 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSAAEANALSATLNARR----PNSAITVQADLSNV  109 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHS----TTCEEEEECCCSSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhc----CCeEEEEEeeCCCc
Confidence            35678877766542   3455556666  999999 88887776666554 22    25788999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	304
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	5e-16
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	8e-10
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	9e-10
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	5e-09
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	7e-09
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	2e-08
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	2e-08
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	3e-08
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	6e-08
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	3e-07
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	3e-07
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	4e-07
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	5e-07
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	1e-06
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	8e-06
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	1e-05
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	2e-05
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-05
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	3e-05
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	4e-05
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	5e-05
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	1e-04
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-04
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	3e-04
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	3e-04
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	0.004

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 74.2 bits (181), Expect = 5e-16
 Identities = 42/216 (19%), Positives = 83/216 (38%), Gaps = 40/216 (18%)

Query: 61  FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKP 120
           FSCP+C++PL R+  +           + C +  +   +K+ Y++L  +   +       
Sbjct: 2   FSCPLCHQPLSREKNS-----------YICPQRHQFDMAKEGYVNLLPVQHKRSRDPGD- 49

Query: 121 ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQ-EYFKSAQGGLLVDVSCGSGL 179
            S E+ ++           R+ F  +G   P  +  +AQ       +   ++D+ CG G 
Sbjct: 50  -SAEMMQA-----------RRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGY 97

Query: 180 FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239
           ++  FA +        LD S+  ++       Q    +            RLPF+   +D
Sbjct: 98  YTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVA--------SSHRLPFSDTSMD 149

Query: 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275
           A+    A            E++R+++ GG  +  T 
Sbjct: 150 AIIRIYAPC-------KAEELARVVKPGGWVITATP 178

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 8e-10
 Identities = 22/177 (12%), Positives = 46/177 (25%), Gaps = 23/177 (12%)

Query: 124 ELFRSPFVSFL-------YERGW-RQNFNRSGFPGPDE-----EFKMAQEYFKSAQ---G 167
           +L   P    L       Y           +  P   E      F +  +     +    
Sbjct: 93  KLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDD 152

Query: 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT------SNL 221
            L VD+  G G    + A +        ++ ++   +      ++    +       +  
Sbjct: 153 DLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY 212

Query: 222 ALVRADVCRLPFASGFVDA-VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277
            L R D     +     +  V         P   + + E    ++ GG  V +    
Sbjct: 213 TLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFA 269

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 54.8 bits (131), Expect = 9e-10
 Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 22/136 (16%)

Query: 151 PDEEF---------------KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVA 195
           PD+EF                +     +  +  + VDV CG+G  + + A       V A
Sbjct: 3   PDDEFIKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRR--VYA 60

Query: 196 LDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSN 255
           +D +   +      +++    L  N+ L+  D          +D    G +         
Sbjct: 61  IDRNPEAISTTEMNLQRHG--LGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEI-- 116

Query: 256 AVAEISRILRSGGVFV 271
            +  I   L+ GG  +
Sbjct: 117 -LRIIKDKLKPGGRII 131

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 54.1 bits (129), Expect = 5e-09
 Identities = 17/129 (13%), Positives = 35/129 (27%), Gaps = 6/129 (4%)

Query: 144 NRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENM 202
            R  +   D    +    +K  +   +VD  CG G                  +D  E +
Sbjct: 5   TRDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETL 64

Query: 203 LRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISR 262
           L +  +  +                       +   D     A L    +P   + ++  
Sbjct: 65  LAEARELFRLLPYDSEFLE-----GDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIH 119

Query: 263 ILRSGGVFV 271
            ++ GG  +
Sbjct: 120 SVKKGGKII 128

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 7e-09
 Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 40/174 (22%)

Query: 154 EFKMAQEYFKSAQ--GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK 211
           + +   + F + +  G  L+D+  G  ++    A    +  +   DF E   ++   +++
Sbjct: 40  KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSA-CSHFEDITMTDFLEVNRQELGRWLQ 98

Query: 212 QDN---------------------------TILTSNLALVRADVCR------LPFASGFV 238
           ++                             +      ++  DV +         A    
Sbjct: 99  EEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPA 158

Query: 239 DAVHAGAALHC----WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV 288
           DA+ +   L        S   A+  I+ +LR GG  +    L  +   +   R+
Sbjct: 159 DALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 212

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 51.9 bits (123), Expect = 2e-08
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 5/111 (4%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++D+  G+G  +  F+        + +D ++ M+     F ++            +    
Sbjct: 20  VLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRF---QQGTAE 74

Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS 280
            LPF     D +    A H +     AV E++R+L+  G F+         
Sbjct: 75  SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED 125

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 51.7 bits (123), Expect = 2e-08
 Identities = 15/138 (10%), Positives = 41/138 (29%), Gaps = 4/138 (2%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
           +     +   ++ +   +G      A       V A++++  ++R+  D   +   I+  
Sbjct: 68  KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIP- 126

Query: 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT 279
              ++        +A+           +         +      L+ GG  +     R  
Sbjct: 127 ---ILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSI 183

Query: 280 SSTSLTGRVLREDSAELQ 297
             T     + +E    L+
Sbjct: 184 DVTKDPKEIFKEQKEILE 201

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 3e-08
 Identities = 17/165 (10%), Positives = 43/165 (26%), Gaps = 30/165 (18%)

Query: 135 YERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLL------------VDVSCGSGLFSR 182
           Y   +R+  N S       E +  QE+      G++            + +  G+G    
Sbjct: 3   YVESFRRFLNHST------EHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDL 56

Query: 183 KFAK------SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----- 231
           +          G       ++ S   + +  + + + + +     A  +           
Sbjct: 57  QILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML 116

Query: 232 -PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275
                   D +H    L+        +     +L +    +    
Sbjct: 117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV 161

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 50.4 bits (119), Expect = 6e-08
 Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 4/123 (3%)

Query: 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208
           P  +E++       +   G  ++D+  GSG     +A+    +    +D S     Q   
Sbjct: 16  PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAKR 74

Query: 209 FIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
             ++       +     A              V    A       + A   +++ L+ GG
Sbjct: 75  RAEELGVSERVHFIHNDAAGYVANEKCDVAACVG---ATWIAGGFAGAEELLAQSLKPGG 131

Query: 269 VFV 271
           + +
Sbjct: 132 IML 134

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.8 bits (115), Expect = 3e-07
 Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 10/133 (7%)

Query: 152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFI 210
            E         +      ++DV+CG+G+ S    + G + + V A D       +     
Sbjct: 42  AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNR 101

Query: 211 KQDNTILTSNLALVRADV--CRLPFASGFVDAVHAGAALHCWPSPSN-------AVAEIS 261
           +++       +           +P   GF   +  G +    P           A+  I+
Sbjct: 102 RKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIA 161

Query: 262 RILRSGGVFVGTT 274
            ++R GG+ V   
Sbjct: 162 SMVRPGGLLVIDH 174

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 48.4 bits (114), Expect = 3e-07
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           +G  ++D+ CG G    K+ ++G       +D +E  +       +  N      +    
Sbjct: 24  RGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARV--RARNMKRRFKVFFRA 80

Query: 226 ADVCRLPFASGFV-DAVHAGAALHCWPSPSNAV----AEISRILRSGGVFVGTTF 275
            D        G   D + +  + H   S S ++      I+R LR GG F+ T  
Sbjct: 81  QDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++DV+ G G  +  FA       VVA D +E++L+    FI+ +       +      + 
Sbjct: 19  VLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 76

Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS 280
                   V    A    H +P+P++ V+E  R+L+ GG  +        +
Sbjct: 77  FTDERFHIVTCRIAA---HHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN 124

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 47.0 bits (111), Expect = 5e-07
 Identities = 31/181 (17%), Positives = 60/181 (33%), Gaps = 24/181 (13%)

Query: 127 RSPFVSFLYER---GWRQ-NFNRSGFPGPDEEFKMAQEYFKSAQ-----GGLLVDVSCGS 177
           +S + S   E+   G+R+    RS         K+A    K  +        ++ +   S
Sbjct: 17  KSKYGSHYGEKVFDGYREWVPWRS---------KLAAMILKGHRLKLRGDERVLYLGAAS 67

Query: 178 GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237
           G      A       + A+++S     +  + +++ N     N+  +  D  +    SG 
Sbjct: 68  GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-----NIIPLLFDASKPWKYSGI 122

Query: 238 VDAVHAG-AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLREDSAEL 296
           V+ V      +          A     L+  G  V     R   ST+    V +    E+
Sbjct: 123 VEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEM 182

Query: 297 Q 297
           +
Sbjct: 183 E 183

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 4/108 (3%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           GG +++V  G  + + K  ++        ++ ++ + ++  D+  +    +     L   
Sbjct: 54  GGRVLEVGFGMAIAASKVQEAPIDE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED 112

Query: 227 DVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
               LP         D              +       R+L+ GGV  
Sbjct: 113 VAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 160

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 43.4 bits (101), Expect = 8e-06
 Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 8/140 (5%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
              K    G  +D+ CG+G  S   A +G        + +          +++       
Sbjct: 24  AAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPA------SMANLERIKAAEGL 77

Query: 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277
           +               G  D + +   +    +      +A + R  + GG  +    + 
Sbjct: 78  DNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137

Query: 278 YTSSTSLTGRVLREDSAELQ 297
                   G        EL+
Sbjct: 138 TPDFPCTVGFPFAFKEGELR 157

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 7/104 (6%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           +DV  G+G+     AK+G    V+ ++ S                 L   + +++  V  
Sbjct: 38  LDVGSGTGILCMFAAKAGARK-VIGIECSSISDYAVKIVKANK---LDHVVTIIKGKVEE 93

Query: 231 LPFASGFVDAVHAGAALHCWPSPSN---AVAEISRILRSGGVFV 271
           +      VD + +    +C    S     +    + L   G+  
Sbjct: 94  VELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 31/199 (15%), Positives = 58/199 (29%), Gaps = 46/199 (23%)

Query: 124 ELFRSPFVSFLYERGWRQNFNRSGFPGPDEEF-----KMAQEYFKSA--QGGLLVDVSCG 176
           + ++  F+   Y       ++  G P P+ E      +   + F     QG  L+D+  G
Sbjct: 5   DEYQKHFLPRDY---LATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSG 61

Query: 177 SGLFSRKFAKSGTYSGVVALDFSENMLRQC------------------------------ 206
             ++    A   ++  +   DF++    +                               
Sbjct: 62  PTIYQV-LAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRW 120

Query: 207 -YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHC----WPSPSNAVAEIS 261
                K    +       V       P      D V    A+ C      +   A+  ++
Sbjct: 121 EEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLA 180

Query: 262 RILRSGGVFVGTTFLRYTS 280
            +L+ GG  V T  LR  S
Sbjct: 181 SLLKPGGHLVTTVTLRLPS 199

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           +  +++DV CG+G+ S   AK+G    V+ +D SE + +            L   + L++
Sbjct: 35  KDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNK---LEDTITLIK 90

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNA---VAEISRILRSGGVFV 271
             +  +      VD + +    +     S     +   ++ L  GG   
Sbjct: 91  GKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 42.2 bits (98), Expect = 3e-05
 Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 11/119 (9%)

Query: 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI 216
           M + +    + G L+++    G F+ +  +    + +  ++ SE  +      +K   T 
Sbjct: 11  MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITY 68

Query: 217 LTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEI-SRILRSGGVFVGTT 274
                                 D +     L     P   +  I    L  GG      
Sbjct: 69  --------IHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC 119

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 9/106 (8%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G  +++V  GSG  S     +    G +  ++  E+ L++  D + +       N+   R
Sbjct: 86  GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE--FYDIGNVRTSR 143

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
           +D+        +       A +   P P N V +I+ +++ G V  
Sbjct: 144 SDIADFISDQMYD------AVIADIPDPWNHVQKIASMMKPGSVAT 183

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 41.6 bits (96), Expect = 5e-05
 Identities = 20/157 (12%), Positives = 42/157 (26%), Gaps = 11/157 (7%)

Query: 152 DEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
            +      E            +D++CG+G  +                ++ ++ ++    
Sbjct: 21  KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF------KNTWAVDLSQEMLSE 74

Query: 210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS---NAVAEISRILRS 266
            +           L   D+  L     F        + +              +S  L+ 
Sbjct: 75  AENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKE 134

Query: 267 GGVFVGTTFLRYTSSTSLTGRVLREDSAELQLFDRRR 303
           GGVF+      Y  S  L       D  E+  +   +
Sbjct: 135 GGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQ 171

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 8/131 (6%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G  +++   GSG  S   +K+    G V++ +  ++         K        +     
Sbjct: 99  GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW 158

Query: 226 ADVCRLPF--ASGFVDAVHAGAALHCW---PSPSNAVAEISRILRSGGVFVGTTFLRYTS 280
            D         SG  + + +           +P   +      L+ GGV     ++   +
Sbjct: 159 PDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCA--VYVVNIT 216

Query: 281 STSLTGRVLRE 291
                   +R 
Sbjct: 217 QVIELLDGIRT 227

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 12/130 (9%), Positives = 33/130 (25%), Gaps = 12/130 (9%)

Query: 154 EFKMAQEYFKSAQ---GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI 210
                 + ++  Q   G   +D+  G G    + A     +     +  ++         
Sbjct: 201 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQY 260

Query: 211 KQDN--------TILTSNLALVRADVCRLPFASGFVDAVHAGAALHC-WPSPSNAVAEIS 261
           ++           +     +L ++ V     A                    +  V +I 
Sbjct: 261 EELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKIL 320

Query: 262 RILRSGGVFV 271
           +  + G   +
Sbjct: 321 QTAKVGCKII 330

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 10/119 (8%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           DV CG+G+ S   AK G    V+ +D S  +               +  + L+R  +  +
Sbjct: 44  DVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNG---FSDKITLLRGKLEDV 99

Query: 232 PFASGFVDAVHA---GAALHCWPSPSNAVAEISRILRSGGVFV---GTTFLRYTSSTSL 284
                 VD + +   G  L         +      L  GG+      +  L     +  
Sbjct: 100 HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQY 158

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 17/128 (13%)

Query: 159 QEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT 215
           Q+Y+ S     G  ++   CG        +  G +  VV  + SE  + + +    +   
Sbjct: 10  QQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYH--VVGAELSEAAVERYFTERGEQPH 67

Query: 216 ILTSNLALV---------RADVCRLPFAS-GFVDAVHAGAALHCWPSPSNA--VAEISRI 263
           I +     V           D   L     G   A +  AA+   P+      V  +  +
Sbjct: 68  ITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEAL 127

Query: 264 LRSGGVFV 271
           +      +
Sbjct: 128 MPQACSGL 135

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 14/151 (9%)

Query: 124 ELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSA---QGGLLVDVSCGSGLF 180
           EL+    ++  Y+  +R+   R        E    +E FK     +   ++D++CG+G+ 
Sbjct: 3   ELYTL--LAEYYDTIYRRRIER-----VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIP 55

Query: 181 SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240
           + + A+ G    VV LD  E MLR      K+ N  +      V     +  F    V  
Sbjct: 56  TLELAERGYE--VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD--AVTM 111

Query: 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             +              ++++  L+ GGVF+
Sbjct: 112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	304
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.96
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.9
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.9
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.89
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.87
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.87
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.84
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.83
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.82
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.81
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.81
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.81
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.81
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.8
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.79
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.78
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.77
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.77
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.77
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.76
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.76
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.75
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.75
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.75
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.74
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.73
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.7
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.7
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.7
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.69
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.69
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.69
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.68
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.68
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.67
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.66
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.65
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.65
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.63
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.63
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.6
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.59
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.57
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.57
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.52
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.52
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.51
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.5
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.49
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.41
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.39
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.39
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.36
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.35
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.32
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.29
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.29
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.21
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.2
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.17
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.16
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.15
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.14
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.13
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.12
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.12
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.11
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.1
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.06
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.98
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.98
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.96
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.95
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.87
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.81
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.8
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.79
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.75
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.75
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.74
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.69
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.66
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.59
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.57
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.57
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.56
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.55
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.55
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.55
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.53
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.51
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.5
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.48
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.47
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.41
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.32
d2jnya1	59	Uncharacterized protein Cgl1405/cg1592 {Corynebact	98.29
d2pk7a1	59	Uncharacterized protein PFL1779 {Pseudomonas fluor	98.28
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.22
d2hf1a1	59	Hypothetical protein CV3345 {Chromobacterium viola	98.22
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.19
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.14
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.94
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.37
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.16
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.09
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.05
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.93
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.89
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.85
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.81
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.66
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.43
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.41
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.35
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.34
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.33
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.07
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.92
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.83
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.82
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.81
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.8
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	95.77
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.73
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.62
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.31
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.53
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.31
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.18
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.17
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.16
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	94.1
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.05
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	93.78
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	93.74
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.58
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	93.52
d1dl6a_	58	Transcription initiation factor TFIIB, N-terminal	93.41
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	93.39
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.37
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	93.32
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.03
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	92.58
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	92.16
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	91.94
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	91.74
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	91.57
d1pfva3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch	91.25
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	91.14
d1rqga3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro	91.03
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	90.98
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.93
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.26
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	89.85
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	89.42
d1pfta_	50	Transcription initiation factor TFIIB, N-terminal	89.21
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	89.02
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.01
d1vqoz1	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	88.87
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.85
d1jj2y_	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	88.66
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	88.32
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	87.74
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	87.56
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	86.78
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	86.77
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	86.5
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	86.44
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	86.22
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	86.11
d1neea2	37	Zinc-binding domain of translation initiation fact	85.97
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	85.89
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	85.74
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	84.27
d2dsxa1	52	Rubredoxin {Desulfovibrio gigas [TaxId: 879]}	83.42
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	83.24
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	83.03
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	82.95
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	82.68
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	82.57
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	82.31
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	82.14
d1k81a_	36	Zinc-binding domain of translation initiation fact	81.84
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	81.82
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	81.73
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	81.34
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	81.18
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	81.17
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	81.04
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	80.58
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	80.22
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	80.14

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=6.3e-29  Score=217.50  Aligned_cols=178  Identities=24%  Similarity=0.414  Sum_probs=136.1

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCeeeeecccCccCccCCCccccccccCchhhHHHHHhH
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGW  139 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~s~~~~~~w  139 (304)
                      .|+||+|+++|....           +.++|.+|++.+..++||+++++......|....  ..+++.           .
T Consensus         1 sf~CP~C~~~L~~~~-----------~~l~C~~~h~fd~~~~Gy~~ll~~~~~~~~~~~~--~~~~~~-----------a   56 (268)
T d1p91a_           1 SFSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGD--SAEMMQ-----------A   56 (268)
T ss_dssp             CBBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSS--SHHHHH-----------H
T ss_pred             CccCCCCChhhhcCC-----------CeEECCCCCccccccCceEecccccccccCCCCC--CHHHHH-----------H
Confidence            379999999987644           5799999998888899999998775544333221  011111           1


Q ss_pred             HHhhhcCCCCCc--HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccC
Q 021975          140 RQNFNRSGFPGP--DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL  217 (304)
Q Consensus       140 ~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~  217 (304)
                      ++.+...++...  +...+.+...+. .++.+|||||||+|.++..+++.+++.+++|+|+|+.+++.|+++        
T Consensus        57 r~~~l~~g~~~~l~~~~~~~l~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~--------  127 (268)
T d1p91a_          57 RRAFLDAGHYQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR--------  127 (268)
T ss_dssp             HHHHHTTTTTHHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH--------
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc--------
Confidence            333333333221  222333333333 357799999999999999999998888999999999999999884        


Q ss_pred             CCCeEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          218 TSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       218 ~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..++.++++|+.++|+++++||+|++.++++|       ++|+.|+|||||+|++.+++.
T Consensus       128 ~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~  180 (268)
T d1p91a_         128 YPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGP  180 (268)
T ss_dssp             CTTSEEEECCTTSCSBCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECT
T ss_pred             cccccceeeehhhccCCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCC
Confidence            36799999999999999999999999998887       578999999999999999865

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=1.3e-23  Score=179.61  Aligned_cols=119  Identities=18%  Similarity=0.319  Sum_probs=109.9

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      ..+++.+.....++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++.+..+   ..++.++++|++++|+
T Consensus         4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~---~~~~~~~~~d~~~~~~   78 (234)
T d1xxla_           4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKG---VENVRFQQGTAESLPF   78 (234)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHT---CCSEEEEECBTTBCCS
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhcccc---cccccccccccccccc
Confidence            345677788888899999999999999999999876  99999999999999999988876   3689999999999999


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++++||+|++.++++|++|+..+++++.++|||||++++.++..
T Consensus        79 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~  122 (234)
T d1xxla_          79 PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  122 (234)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence            99999999999999999999999999999999999999988765

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.90  E-value=1.4e-23  Score=178.57  Aligned_cols=116  Identities=25%  Similarity=0.397  Sum_probs=105.9

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (304)
                      .+.+.....++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|+++++..+   ..++.++++|++++|++++
T Consensus         6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~---~~~i~~~~~d~~~l~~~~~   80 (231)
T d1vl5a_           6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNG---HQQVEYVQGDAEQMPFTDE   80 (231)
T ss_dssp             HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCC-CCCSCTT
T ss_pred             HHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccc---ccccccccccccccccccc
Confidence            455567777789999999999999999999986  99999999999999999988776   4789999999999999999


Q ss_pred             ccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +||+|++.+++||++|+..+++++.++|||||++++.++..
T Consensus        81 ~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_          81 RFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             ccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            99999999999999999999999999999999999988765

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.89  E-value=1.1e-22  Score=178.55  Aligned_cols=115  Identities=16%  Similarity=0.168  Sum_probs=104.4

Q ss_pred             hhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccce
Q 021975          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (304)
                      .....++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++....+  ...++.++++|+.++|+++++||+
T Consensus        62 ~~~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~g--l~~~v~~~~~d~~~l~~~~~sfD~  138 (282)
T d2o57a1          62 TGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIPCEDNSYDF  138 (282)
T ss_dssp             TTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHT--CTTTEEEEECCTTSCSSCTTCEEE
T ss_pred             hcCCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccc--ccccccccccccccccccccccch
Confidence            3345678999999999999999998873 3499999999999999999998887  467899999999999999999999


Q ss_pred             EEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      |++..+++|++++..+++++.++|||||+|++.++...
T Consensus       139 V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~  176 (282)
T d2o57a1         139 IWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE  176 (282)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             hhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecC
Confidence            99999999999999999999999999999999987654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=6.5e-22  Score=170.10  Aligned_cols=125  Identities=15%  Similarity=0.178  Sum_probs=112.0

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (304)
                      |...+..+.+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++.+..+  ...+++|+.+|+
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~g--l~~~v~~~~~d~   92 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDA   92 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCC
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhh--ccccchhhhhHH
Confidence            4456667788888888899999999999999999998874 3599999999999999999998888  567899999999


Q ss_pred             CCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .++ +.+++||+|++..+++|++|+..++++++++|||||++++.++..
T Consensus        93 ~~~-~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~  140 (245)
T d1nkva_          93 AGY-VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYW  140 (245)
T ss_dssp             TTC-CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred             hhc-cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccc
Confidence            997 467899999999999999999999999999999999999988753

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=9.1e-22  Score=166.17  Aligned_cols=105  Identities=27%  Similarity=0.437  Sum_probs=96.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      +..+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++....+    ..+.++.+|+.++++++++||+|++..
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~~~--~v~giD~S~~~i~~ak~~~~~~~----~~~~~~~~d~~~l~~~~~~fD~I~~~~  110 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLSFEDKTFDYVIFID  110 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCTTSCCSCTTCEEEEEEES
T ss_pred             CCCEEEEECCCcchhhhhHhhhhc--ccccccccccchhhhhhhhcccc----ccccccccccccccccCcCceEEEEec
Confidence            467999999999999999999876  99999999999999999887765    578899999999999999999999999


Q ss_pred             hhccCC--CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          246 ALHCWP--SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       246 vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +++|++  |+..+|+++.++|||||++++..+.
T Consensus       111 ~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         111 SIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             chhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            999997  6668999999999999999988765

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=8.9e-21  Score=162.04  Aligned_cols=100  Identities=29%  Similarity=0.332  Sum_probs=90.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec-
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG-  244 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~-  244 (304)
                      ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|+++..         ..++.+|++++++++++||+|++. 
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~---------~~~~~~~~~~l~~~~~~fD~ii~~~  110 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV---------KNVVEAKAEDLPFPSGAFEAVLALG  110 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC---------SCEEECCTTSCCSCTTCEEEEEECS
T ss_pred             CCCEEEEECCCCchhcccccccce--EEEEeecccccccccccccc---------cccccccccccccccccccceeeec
Confidence            467999999999999999999876  99999999999999998531         236789999999999999999975 


Q ss_pred             chhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .++||++|+..+|+++.++|||||++++.++.
T Consensus       111 ~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1         111 DVLSYVENKDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             SHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             chhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence            68999999999999999999999999998864

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.83  E-value=2.4e-20  Score=158.16  Aligned_cols=106  Identities=12%  Similarity=0.148  Sum_probs=94.3

Q ss_pred             hcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceE
Q 021975          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (304)
                      ....++++|||||||+|.++..+++.+.  +|+|+|+|+.+++.|+++.       ..++.++.++++++++ +++||+|
T Consensus        16 ~~~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~-------~~~~~~~~~~~~~~~~-~~~fD~I   85 (225)
T d2p7ia1          16 TPFFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRL-------KDGITYIHSRFEDAQL-PRRYDNI   85 (225)
T ss_dssp             GGGCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHS-------CSCEEEEESCGGGCCC-SSCEEEE
T ss_pred             hhhCCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhccc-------cccccccccccccccc-ccccccc
Confidence            3334567999999999999999999886  8999999999999998863       3579999999988876 5799999


Q ss_pred             EecchhccCCCHHHHHHHHH-HhcccCcEEEEEEeCC
Q 021975          242 HAGAALHCWPSPSNAVAEIS-RILRSGGVFVGTTFLR  277 (304)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~-r~LkpgG~lvi~~~~~  277 (304)
                      ++.+||||++||..++.++. ++|||||++++.+++.
T Consensus        86 ~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~  122 (225)
T d2p7ia1          86 VLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA  122 (225)
T ss_dssp             EEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             cccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCc
Confidence            99999999999999999998 7899999999998764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=5.5e-20  Score=153.73  Aligned_cols=96  Identities=21%  Similarity=0.294  Sum_probs=88.5

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      +..+|||||||+|.++..+.      +++|+|+|+.+++.+++          .++.++++|++++++++++||+|++.+
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~----------~~~~~~~~d~~~l~~~~~~fD~I~~~~   99 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK----------RGVFVLKGTAENLPLKDESFDFALMVT   99 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH----------TTCEEEECBTTBCCSCTTCEEEEEEES
T ss_pred             CCCeEEEECCCCcccccccc------eEEEEeCChhhcccccc----------ccccccccccccccccccccccccccc
Confidence            45689999999999987773      57899999999999987          468999999999999999999999999


Q ss_pred             hhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +|||++|+..+++++.++|||||.+++.++..
T Consensus       100 ~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_         100 TICFVDDPERALKEAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             CGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ccccccccccchhhhhhcCCCCceEEEEecCC
Confidence            99999999999999999999999999999865

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.2e-20  Score=158.09  Aligned_cols=111  Identities=12%  Similarity=0.138  Sum_probs=97.7

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEe
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (304)
                      ..++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|+++++..+   ..++.++++|++++++++++||+|++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~---~~~~~f~~~d~~~~~~~~~~fD~I~~  133 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPEPDSYDVIWI  133 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccccc---cccccccccccccccccccccccccc
Confidence            34567899999999999998876643 489999999999999999987765   36789999999999988999999999


Q ss_pred             cchhccCCCHH--HHHHHHHHhcccCcEEEEEEeCCC
Q 021975          244 GAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       244 ~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      .++++|++++.  .++++++++|||||.+++.++...
T Consensus       134 ~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~  170 (222)
T d2ex4a1         134 QWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ  170 (222)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBS
T ss_pred             ccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccc
Confidence            99999999874  799999999999999999987653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=5.5e-20  Score=157.97  Aligned_cols=108  Identities=25%  Similarity=0.409  Sum_probs=93.9

Q ss_pred             hcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceE
Q 021975          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (304)
                      ....+..+|||||||+|.++..|++.+.  +|+|+|+|+.|++.|+++++..+    .++.++++|+++++++ ++||+|
T Consensus        37 ~~~~~~~~iLDiGcGtG~~~~~l~~~~~--~v~gvD~s~~mi~~a~~~~~~~~----~~i~~~~~d~~~l~~~-~~fD~I  109 (251)
T d1wzna1          37 DAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKERN----LKIEFLQGDVLEIAFK-NEFDAV  109 (251)
T ss_dssp             TCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEESCGGGCCCC-SCEEEE
T ss_pred             hcCCCCCEEEEeCCCCCccchhhcccce--EEEEEeecccccccccccccccc----ccchheehhhhhcccc-cccchH
Confidence            3445667999999999999999999886  99999999999999999988765    5799999999999986 589999


Q ss_pred             Eec-chhccCC--CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          242 HAG-AALHCWP--SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       242 ~~~-~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ++. .+++|+.  +...+|+++.++|||||++++..+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            986 5778874  4568999999999999999987654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.81  E-value=2.5e-19  Score=151.73  Aligned_cols=126  Identities=16%  Similarity=0.237  Sum_probs=103.1

Q ss_pred             CCcHHHHHHHHHhhc--ccCCCeEEEEcCCccHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEE
Q 021975          149 PGPDEEFKMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV  224 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~  224 (304)
                      |++....+.+...+.  ..++.+|||+|||+|..+..+++.  .++.+|+|+|+|+.|++.|+++++..+  ...++.+.
T Consensus        20 P~Y~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~--~~~~~~~~   97 (225)
T d1im8a_          20 PGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEIL   97 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC--CSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc--ccchhhhc
Confidence            444444444444433  245789999999999999999875  356799999999999999999988766  45778888


Q ss_pred             EccCCCCCCCCCccceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          225 RADVCRLPFASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       225 ~~d~~~lp~~~~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      .+|+.+++  ...+|+|++..++||++  |+..+|++++++|||||.+++.++...
T Consensus        98 ~~d~~~~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~  151 (225)
T d1im8a_          98 CNDIRHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF  151 (225)
T ss_dssp             CSCTTTCC--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             cchhhccc--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccccc
Confidence            88887766  45789999999999995  778999999999999999999987653

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.81  E-value=1.5e-19  Score=158.35  Aligned_cols=116  Identities=15%  Similarity=0.188  Sum_probs=100.4

Q ss_pred             HHHHHhh-cccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          156 KMAQEYF-KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       156 ~~l~~~l-~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      +.+.+.+ ...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.|+++.+..+    .++.|+++|+..+++
T Consensus        16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~----~~~~f~~~d~~~~~~   91 (281)
T d2gh1a1          16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP----YDSEFLEGDATEIEL   91 (281)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS----SEEEEEESCTTTCCC
T ss_pred             HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc----ccccccccccccccc
Confidence            3444333 345678999999999999999998754 4689999999999999999988765    579999999999887


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      + ++||+|++.++++|++||..+++++.++|||||.+++.++.
T Consensus        92 ~-~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          92 N-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             S-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             c-CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            5 57999999999999999999999999999999999998864

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.80  E-value=3.6e-19  Score=147.87  Aligned_cols=106  Identities=21%  Similarity=0.274  Sum_probs=95.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ++++|||||||+|.++..+++++.  +|+|+|+|+.+++.++++.+..+   ..++.+...|+..+++ +++||+|++..
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~--~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~d~~~~~~-~~~fD~I~~~~  103 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPASMANLERIKAAEG---LDNLQTDLVDLNTLTF-DGEYDFILSTV  103 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CTTEEEEECCTTTCCC-CCCEEEEEEES
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhh--hhccccCcHHHHHHHHHHhhhcc---ccchhhhheecccccc-cccccEEEEee
Confidence            456999999999999999999987  99999999999999999888776   3679999999998875 67899999999


Q ss_pred             hhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          246 ALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       246 vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++|++++  ..+++++.++|||||++++.++..
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  137 (198)
T d2i6ga1         104 VMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD  137 (198)
T ss_dssp             CGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             eeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            99999765  479999999999999999988764

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.79  E-value=3.3e-19  Score=153.89  Aligned_cols=114  Identities=9%  Similarity=0.011  Sum_probs=97.9

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCc
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (304)
                      +.+.+...+..+|||+|||+|.++..++..+. .+|+++|+++.+++.|++++...     ..+.++++|++++++++++
T Consensus        85 fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~~-----~~~~~~~~d~~~~~~~~~~  158 (254)
T d1xtpa_          85 FIASLPGHGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETATLPPNT  158 (254)
T ss_dssp             HHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCCCCSSC
T ss_pred             HHhhCCCCCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhcccccc-----ccceeEEccccccccCCCc
Confidence            33445555678999999999999998876642 38999999999999999876543     4689999999999988999


Q ss_pred             cceEEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEeCC
Q 021975          238 VDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ||+|++.++++|++|++  .+|+++.++|||||++++.++..
T Consensus       159 fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~  200 (254)
T d1xtpa_         159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS  200 (254)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             cceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCC
Confidence            99999999999998875  78999999999999999988765

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.78  E-value=5.6e-19  Score=152.20  Aligned_cols=108  Identities=20%  Similarity=0.245  Sum_probs=93.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC-CCCccceEEec
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAG  244 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~  244 (304)
                      ++.+|||||||+|..+..+++.+. .+|+|+|+|+.|++.|+++....+  ...++.+.++|+...++ .+++||+|++.
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~~~~~~fD~V~~~  100 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMK--RRFKVFFRAQDSYGRHMDLGKEFDVISSQ  100 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSC--CSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcC--CCcceEEEEcchhhhcccccccceEEEEc
Confidence            578999999999999999988763 489999999999999999887765  45689999999977665 46789999999


Q ss_pred             chhccCCCH----HHHHHHHHHhcccCcEEEEEEeC
Q 021975          245 AALHCWPSP----SNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       245 ~vl~h~~d~----~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +++||+.++    ..+++++.++|||||+|++.++.
T Consensus       101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_         101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence            999998543    46899999999999999998765

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.77  E-value=8e-19  Score=150.49  Aligned_cols=104  Identities=18%  Similarity=0.262  Sum_probs=91.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec-
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG-  244 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~-  244 (304)
                      ++.+|||||||+|.++..+++.+.  +++|+|+|+.|++.|+++....+    .++.++++|+.++++ +++||+|++. 
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~----~~v~~~~~d~~~~~~-~~~fD~i~~~~  109 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQG----LKPRLACQDISNLNI-NRKFDLITCCL  109 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTT----CCCEEECCCGGGCCC-SCCEEEEEECT
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccC----ccceeeccchhhhcc-cccccccceee
Confidence            467999999999999999999987  99999999999999999988765    579999999998876 4689999975 


Q ss_pred             chhccCCCH---HHHHHHHHHhcccCcEEEEEEeC
Q 021975          245 AALHCWPSP---SNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       245 ~vl~h~~d~---~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .+++|+.++   ..++++++++|||||.|++....
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~  144 (246)
T d1y8ca_         110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS  144 (246)
T ss_dssp             TGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             eeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence            688888754   46899999999999999976543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=2.1e-18  Score=150.73  Aligned_cols=117  Identities=15%  Similarity=0.200  Sum_probs=101.0

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      .+.+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+++++.|+++++..+  ....+.+...|..++   
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~--l~~~~~~~~~d~~~~---  114 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASID--TNRSRQVLLQGWEDF---  114 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCGGGC---
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhc--cccchhhhhhhhhhh---
Confidence            4566777778889999999999999999988774 2499999999999999999999988  567788888887665   


Q ss_pred             CCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++||.|++..+++|+.+.  ..+++++.++|||||++++.+...
T Consensus       115 ~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~  159 (280)
T d2fk8a1         115 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS  159 (280)
T ss_dssp             CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeec
Confidence            4689999999999999755  789999999999999999977543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=3.3e-18  Score=149.97  Aligned_cols=117  Identities=16%  Similarity=0.138  Sum_probs=102.0

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      .+.+.+.+...++.+|||||||.|.++..+++.. +++|+|+++|+++++.++++.+..+  ....+.+...|.   ++.
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~--l~~~v~~~~~d~---~~~  123 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVD--SPRRKEVRIQGW---EEF  123 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSC--CSSCEEEEECCG---GGC
T ss_pred             HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhc--cchhhhhhhhcc---ccc
Confidence            4567777888899999999999999999998764 3599999999999999999999888  467788888775   345


Q ss_pred             CCccceEEecchhccCCCH---------HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~---------~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++||.|++..+++|+.++         ..+++++.++|||||++++.+...
T Consensus       124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~  175 (291)
T d1kpia_         124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  175 (291)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred             ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence            7899999999999999874         689999999999999999988765

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=2.4e-18  Score=148.33  Aligned_cols=131  Identities=16%  Similarity=0.163  Sum_probs=112.8

Q ss_pred             hhhcCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCC
Q 021975          142 NFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSN  220 (304)
Q Consensus       142 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~  220 (304)
                      .+-+..-..+...+.++...+...++.+|||+|||+|.++..|++. ++.++|+++|+++++++.|+++++........+
T Consensus        72 ~~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~n  151 (264)
T d1i9ga_          72 SMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDN  151 (264)
T ss_dssp             TSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTT
T ss_pred             hccCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCce
Confidence            3333334555677788999999999999999999999999999988 788899999999999999999987653224578


Q ss_pred             eEEEEccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          221 LALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       221 i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +.++.+|+.+.++++++||.|++     |+++|..++.++.++|||||++++..++-
T Consensus       152 v~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i  203 (264)
T d1i9ga_         152 WRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATV  203 (264)
T ss_dssp             EEEECSCGGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             EEEEecccccccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence            99999999988888999999986     68999999999999999999999887654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=1.8e-18  Score=142.32  Aligned_cols=121  Identities=20%  Similarity=0.216  Sum_probs=106.5

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (304)
                      ++.++....+...+...++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.|+++++.++  ...+++++++|+
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~g--l~~~v~~~~gda   91 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHG--LGDNVTLMEGDA   91 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTT--CCTTEEEEESCH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHcC--CCcceEEEECch
Confidence            45667778888889999999999999999999999998765  99999999999999999999988  567999999999


Q ss_pred             CCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .+.+.....||.|++....+|   ...+++++.+.|||||++++....
T Consensus        92 ~~~~~~~~~~D~v~~~~~~~~---~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          92 PEALCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             HHHHTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             hhcccccCCcCEEEEeCcccc---chHHHHHHHHHhCcCCEEEEEeec
Confidence            887777789999999876554   577899999999999999887653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.75  E-value=2.3e-18  Score=141.82  Aligned_cols=116  Identities=16%  Similarity=0.156  Sum_probs=96.9

Q ss_pred             hhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc---------CCCCeEEEEccCCCC
Q 021975          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---------LTSNLALVRADVCRL  231 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---------~~~~i~~~~~d~~~l  231 (304)
                      .+...++.+|||+|||+|.++..|+++|.  +|+|+|+|+.|++.|+++.+..+..         ....+.++++|+..+
T Consensus        15 ~l~~~~~~rvLd~GCG~G~~a~~la~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l   92 (201)
T d1pjza_          15 SLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   92 (201)
T ss_dssp             HHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             HcCCCCCCEEEEecCcCCHHHHHHHHcCC--ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccc
Confidence            45667889999999999999999999987  9999999999999999987654310         124567899999887


Q ss_pred             C-CCCCccceEEecchhccCCC--HHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          232 P-FASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       232 p-~~~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      + .....||+|++..+++|+++  ...+++++.++|||||.+++..+...
T Consensus        93 ~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~  142 (201)
T d1pjza_          93 TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD  142 (201)
T ss_dssp             THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred             ccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccc
Confidence            6 33568999999999999975  45799999999999999988887653

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=6.8e-18  Score=147.54  Aligned_cols=117  Identities=19%  Similarity=0.192  Sum_probs=103.5

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      .+.+.+.+...++.+|||||||.|.++..+++.. +++|+|+++|+..++.|+++.+..+  ...++.+..+|...++  
T Consensus        51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g--~~~~v~~~~~d~~~~~--  125 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSE--NLRSKRVLLAGWEQFD--  125 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCC--CCSCEEEEESCGGGCC--
T ss_pred             HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhh--hhhhhHHHHhhhhccc--
Confidence            4667777888899999999999999999988875 4699999999999999999998888  5789999999987764  


Q ss_pred             CCccceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                       ++||.|++..++||+.  +...+++++.++|||||++++.+...
T Consensus       126 -~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~  169 (285)
T d1kpga_         126 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG  169 (285)
T ss_dssp             -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             -ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEec
Confidence             6899999999999995  44889999999999999999988753

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6.8e-18  Score=143.25  Aligned_cols=125  Identities=17%  Similarity=0.174  Sum_probs=104.1

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc--------------c
Q 021975          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT--------------I  216 (304)
Q Consensus       151 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~--------------~  216 (304)
                      ...+.+.+..++...++.+|||+|||+|..+..|++.|.  +|+|+|+|+.+++.|+++....+.              .
T Consensus        30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~--~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d2bzga1          30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH--SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS  107 (229)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence            344557777777777889999999999999999999987  999999999999999987653210              0


Q ss_pred             CCCCeEEEEccCCCCC-CCCCccceEEecchhccCC--CHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          217 LTSNLALVRADVCRLP-FASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       217 ~~~~i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ...++.++++|+..++ ...+.||+|+...+++|++  +...+++++.++|||||++++.++..
T Consensus       108 ~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~  171 (229)
T d2bzga1         108 SSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSY  171 (229)
T ss_dssp             TTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred             cCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence            2357899999998774 5578999999999999996  44689999999999999998888765

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.74  E-value=2e-17  Score=136.84  Aligned_cols=119  Identities=13%  Similarity=0.199  Sum_probs=101.6

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      .+++.+.+...++.+|||+|||+|.++..+++.++  +|+++|+|+.+++.++++++.+++ ...++.++.+|+.+ +++
T Consensus        41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l-~~~~i~~~~~d~~~-~~~  116 (194)
T d1dusa_          41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNL-DNYDIRVVHSDLYE-NVK  116 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTC-TTSCEEEEECSTTT-TCT
T ss_pred             HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCC-ccceEEEEEcchhh-hhc
Confidence            35567777777899999999999999999999887  999999999999999999988774 24569999999877 567


Q ss_pred             CCccceEEecchhccCCCH-HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~-~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +++||+|++..++++..+. ..+++++.++|||||.+++.....
T Consensus       117 ~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  160 (194)
T d1dusa_         117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence            8899999999888876654 578999999999999998866543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.73  E-value=1.5e-17  Score=143.31  Aligned_cols=117  Identities=16%  Similarity=0.282  Sum_probs=100.0

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      +.+.+.+...+.++|||||||+|.++..+++++++.+++++|+ +.+++.+++++...+  ...++.++.+|+.+. . .
T Consensus        70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~--~~~rv~~~~~D~~~~-~-~  144 (253)
T d1tw3a2          70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEG--LSDRVDVVEGDFFEP-L-P  144 (253)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTT--CTTTEEEEECCTTSC-C-S
T ss_pred             HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhh--cccchhhccccchhh-c-c
Confidence            3445555555678999999999999999999999899999998 678999999998887  568899999998653 2 2


Q ss_pred             CccceEEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .+||+|++.++|||++++.  .+|++++++|||||+|++.+...
T Consensus       145 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~  188 (253)
T d1tw3a2         145 RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD  188 (253)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred             cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence            5799999999999998775  78999999999999999988654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=2.8e-17  Score=144.39  Aligned_cols=122  Identities=21%  Similarity=0.248  Sum_probs=92.9

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc-CCCCeEEEEccCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCR  230 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-~~~~i~~~~~d~~~  230 (304)
                      ....+.+...+...++.+|||+|||+|.++..|++.|.  +|+|+|+|+.|++.|+++....+.. ......+..+++..
T Consensus        42 ~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~--~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (292)
T d1xvaa_          42 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  119 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             HHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC--eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence            44456667777776778999999999999999999986  9999999999999999987665411 01123444555432


Q ss_pred             ----CCCCCCccceEEec-chhccCCCH-------HHHHHHHHHhcccCcEEEEEEeC
Q 021975          231 ----LPFASGFVDAVHAG-AALHCWPSP-------SNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       231 ----lp~~~~~fD~V~~~-~vl~h~~d~-------~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                          +| ..++||+|++. .+++|++++       ..+|+++.++|||||+|++....
T Consensus       120 ~~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         120 LDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             HHHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cccccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence                23 24689999875 589999763       46999999999999999997653

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.5e-17  Score=145.15  Aligned_cols=110  Identities=8%  Similarity=0.007  Sum_probs=86.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHh----CC--CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCe--EEEEccCCC------C
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKS----GT--YSGVVALDFSENMLRQCYDFIKQDNTILTSNL--ALVRADVCR------L  231 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~----~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i--~~~~~d~~~------l  231 (304)
                      +..+|||||||+|.++..+++.    ++  ...++|+|+|+.|++.++++++...  ...++  .+...+++.      .
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  117 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS--NLENVKFAWHKETSSEYQSRMLE  117 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC--SCTTEEEEEECSCHHHHHHHHTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc--ccccccccchhhhhhhhcchhcc
Confidence            3447999999999987777553    22  3468999999999999999887644  22334  344444322      2


Q ss_pred             CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +.++++||+|++.++|||++|+..+++++.++|||||++++..+..
T Consensus       118 ~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~  163 (280)
T d1jqea_         118 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG  163 (280)
T ss_dssp             SSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             cCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecC
Confidence            4568899999999999999999999999999999999999988765

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.70  E-value=6.2e-17  Score=138.46  Aligned_cols=116  Identities=20%  Similarity=0.203  Sum_probs=96.1

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      +.+.++...+...++.+|||+|||+|.++..+++. ++.++|+++|+++++++.|+++++..+  ...++.+..+|+.+.
T Consensus        72 kD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~--~~~nv~~~~~Di~~~  149 (250)
T d1yb2a1          72 IDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY--DIGNVRTSRSDIADF  149 (250)
T ss_dssp             ---------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS--CCTTEEEECSCTTTC
T ss_pred             HHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc--CCCceEEEEeeeecc
Confidence            44566777888889999999999999999999987 677899999999999999999998876  468999999999875


Q ss_pred             CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                       +++..||.|++     ++++|..+++++.++|||||+|++..+.
T Consensus       150 -~~~~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~  188 (250)
T d1yb2a1         150 -ISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPN  188 (250)
T ss_dssp             -CCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             -cccceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCC
Confidence             45789999986     5789999999999999999999987764

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=6.9e-17  Score=135.46  Aligned_cols=113  Identities=14%  Similarity=0.172  Sum_probs=97.6

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      .....+.+.+...++.+|||||||+|+++..+++. ++...|+++|+++.+++.|+++++..+   ..++.++.+|....
T Consensus        62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~---~~n~~~~~~d~~~~  138 (213)
T d1dl5a1          62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG---IENVIFVCGDGYYG  138 (213)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGC
T ss_pred             hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc---ccccccccCchHHc
Confidence            34456677788888999999999999999999876 566799999999999999999998876   47899999999887


Q ss_pred             CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      .+.+++||+|++..+++|+++      ++.+.|||||+|++..
T Consensus       139 ~~~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         139 VPEFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             CGGGCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEEB
T ss_pred             cccccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEEE
Confidence            777789999999999999864      4678899999998855

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=6.4e-17  Score=134.56  Aligned_cols=105  Identities=18%  Similarity=0.254  Sum_probs=93.2

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CCCCccceEEec
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG  244 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~  244 (304)
                      ...|||||||+|.++..+++..|+..++|+|+++.++..+.++.+..++   .|+.++++|+..+.  ++++++|.|++.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l---~Nv~~~~~Da~~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA---QNVKLLNIDADTLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC---SSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc---cCchhcccchhhhhcccCchhhhccccc
Confidence            4589999999999999999999999999999999999999999998873   78999999998765  788999999998


Q ss_pred             chhccCCCH--------HHHHHHHHHhcccCcEEEEEE
Q 021975          245 AALHCWPSP--------SNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       245 ~vl~h~~d~--------~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +...+....        ..++++++++|||||.|++.|
T Consensus       107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            876654433        378999999999999999976

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.69  E-value=1.9e-16  Score=136.55  Aligned_cols=116  Identities=14%  Similarity=0.180  Sum_probs=98.7

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (304)
                      .+.+.+......+|||||||+|.++..++++.|+.+++++|+ +.+++.++++++..+  ...++.++.+|+.+ +.+ .
T Consensus        72 ~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~--~~~ri~~~~~d~~~-~~p-~  146 (256)
T d1qzza2          72 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAG--LADRVTVAEGDFFK-PLP-V  146 (256)
T ss_dssp             HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTS-CCS-C
T ss_pred             HHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcC--Ccceeeeeeeeccc-ccc-c
Confidence            344444445567999999999999999999999999999997 789999999998887  56889999999875 444 4


Q ss_pred             ccceEEecchhccCCCHH--HHHHHHHHhcccCcEEEEEEeCC
Q 021975          237 FVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +||+|++.++|||+++..  .+|++++++|||||+|++.++..
T Consensus       147 ~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~  189 (256)
T d1qzza2         147 TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRAD  189 (256)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred             cchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEecc
Confidence            599999999999998764  67999999999999999998653

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.68  E-value=1.5e-16  Score=134.71  Aligned_cols=122  Identities=11%  Similarity=0.077  Sum_probs=101.8

Q ss_pred             HHHHHHHHH---hhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC
Q 021975          152 DEEFKMAQE---YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (304)
Q Consensus       152 ~~~~~~l~~---~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (304)
                      .++...+..   .+...++.+|||+|||+|..+..+++.++.+.|+|+|+|+.|++.++++....     .++..+.+|.
T Consensus        57 sklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~-----~ni~~i~~d~  131 (230)
T d1g8sa_          57 SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----ENIIPILGDA  131 (230)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-----TTEEEEECCT
T ss_pred             cHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh-----cccceEEEee
Confidence            345555554   34467899999999999999999999988889999999999999999876543     5788888888


Q ss_pred             CCCC-CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          229 CRLP-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       229 ~~lp-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ...+ +.+..+|++++...++|..++..++.++.+.|||||.+++......
T Consensus       132 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~  182 (230)
T d1g8sa_         132 NKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARS  182 (230)
T ss_dssp             TCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred             ccCcccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccc
Confidence            6643 5567889988888999999999999999999999999999876653

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.1e-17  Score=138.41  Aligned_cols=111  Identities=12%  Similarity=0.182  Sum_probs=91.5

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC--CCCCC
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFAS  235 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~  235 (304)
                      +.+.+. .++++|||||||+|..+..+++..+ .+++|+|+|+.+++.|+++.+..+    .++.++..++..  .++++
T Consensus        46 la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~  119 (229)
T d1zx0a1          46 LAAAAS-SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQT----HKVIPLKGLWEDVAPTLPD  119 (229)
T ss_dssp             HHHHHT-TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCS----SEEEEEESCHHHHGGGSCT
T ss_pred             HHHhhc-cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcc----ccccccccccccccccccc
Confidence            333333 3578999999999999999998753 489999999999999999987754    677888777643  34668


Q ss_pred             CccceEE-----ecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          236 GFVDAVH-----AGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       236 ~~fD~V~-----~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ++||.|+     +..+++|+.++..+++++.|+|||||+|++..
T Consensus       120 ~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         120 GHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             TCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            8898887     57888999999999999999999999998754

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.67  E-value=1.6e-16  Score=132.69  Aligned_cols=111  Identities=15%  Similarity=0.112  Sum_probs=93.4

Q ss_pred             hcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceE
Q 021975          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (304)
                      +...++.+|||+|||+|..+..+++..+..+|+|+|+|+.+++.++++.+..     .++.++.+|....+.....+|.+
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~~v  126 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIVEKV  126 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTCCCE
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc-----CCceEEEeeccCccccccccceE
Confidence            4567899999999999999999999877779999999999999999988764     48999999998866555555554


Q ss_pred             E-ecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          242 H-AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       242 ~-~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      . ..+.+.|..++..+++++.++|||||++++.+..+
T Consensus       127 d~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  163 (209)
T d1nt2a_         127 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKAR  163 (209)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             EEEEecccChhhHHHHHHHHHHHhccCCeEEEEEEcc
Confidence            3 34567788888999999999999999999988654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=5.4e-16  Score=134.01  Aligned_cols=121  Identities=19%  Similarity=0.244  Sum_probs=103.8

Q ss_pred             CCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc
Q 021975          148 FPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (304)
Q Consensus       148 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (304)
                      -..+.....++...+...++.+|||+|||+|.++..+++. ++.++|+++|+++++++.|+++++..+  ...++.+...
T Consensus        85 qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g--~~~~v~~~~~  162 (266)
T d1o54a_          85 QIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTIKVR  162 (266)
T ss_dssp             CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--CGGGEEEECC
T ss_pred             cccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc--cccCcEEEec
Confidence            3445567788999999999999999999999999999987 567899999999999999999999887  4578888888


Q ss_pred             cCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       227 d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      |+.. .+....||.|+     +|+++|..+++++.++|||||+|++..+.
T Consensus       163 d~~~-~~~~~~~D~V~-----~d~p~p~~~l~~~~~~LKpGG~lv~~~P~  206 (266)
T d1o54a_         163 DISE-GFDEKDVDALF-----LDVPDPWNYIDKCWEALKGGGRFATVCPT  206 (266)
T ss_dssp             CGGG-CCSCCSEEEEE-----ECCSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             cccc-cccccceeeeE-----ecCCCHHHHHHHHHhhcCCCCEEEEEeCc
Confidence            8644 34566788775     47899999999999999999999987764

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.65  E-value=1.1e-15  Score=126.98  Aligned_cols=105  Identities=21%  Similarity=0.256  Sum_probs=89.5

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--CCCCccceEEec
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG  244 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~  244 (304)
                      ...|||||||+|.++..+++..|+..++|+|+++.++..|.++....+   ..++.++.+|+..+.  +++.++|.|++.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~---l~Ni~~~~~da~~l~~~~~~~~~~~i~i~  108 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG---VPNIKLLWVDGSDLTDYFEDGEIDRLYLN  108 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC---CSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhc---cccceeeecCHHHHhhhccCCceehhccc
Confidence            458999999999999999999999999999999999999999998887   378999999998865  778899999875


Q ss_pred             chhccCCC--------HHHHHHHHHHhcccCcEEEEEE
Q 021975          245 AALHCWPS--------PSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       245 ~vl~h~~d--------~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +.-.+...        ...+|+.+.++|||||.|++.|
T Consensus       109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            53221111        1578999999999999999877

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=1.6e-16  Score=136.34  Aligned_cols=110  Identities=18%  Similarity=0.215  Sum_probs=90.4

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (304)
                      +.+.+..  .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++.+.++    .++.++++|+.+ .++.
T Consensus       112 ~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~--~V~gvDis~~av~~A~~na~~n~----~~~~~~~~d~~~-~~~~  182 (254)
T d2nxca1         112 KALARHL--RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNG----VRPRFLEGSLEA-ALPF  182 (254)
T ss_dssp             HHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTT----CCCEEEESCHHH-HGGG
T ss_pred             HHHHhhc--CccCEEEEcccchhHHHHHHHhcCC--EEEEEECChHHHHHHHHHHHHcC----CceeEEeccccc-cccc
Confidence            4444433  4588999999999999999998876  99999999999999999999887    467888988765 3557


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++||+|+++...++   ...++.++.++|||||+|+++....
T Consensus       183 ~~fD~V~ani~~~~---l~~l~~~~~~~LkpGG~lilSgil~  221 (254)
T d2nxca1         183 GPFDLLVANLYAEL---HAALAPRYREALVPGGRALLTGILK  221 (254)
T ss_dssp             CCEEEEEEECCHHH---HHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred             cccchhhhcccccc---HHHHHHHHHHhcCCCcEEEEEecch
Confidence            89999999765553   4567899999999999999987644

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.7e-15  Score=134.20  Aligned_cols=124  Identities=17%  Similarity=0.179  Sum_probs=101.3

Q ss_pred             CCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCc--------cCC
Q 021975          148 FPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNT--------ILT  218 (304)
Q Consensus       148 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~--------~~~  218 (304)
                      -..+...+.++...+...++.+|||+|||+|.++..|++. ++.++|+++|+++++++.|+++++..+.        ...
T Consensus        80 qiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~  159 (324)
T d2b25a1          80 AITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP  159 (324)
T ss_dssp             CCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred             cccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence            3445667778888999999999999999999999999987 7788999999999999999999875420        134


Q ss_pred             CCeEEEEccCCCCC--CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          219 SNLALVRADVCRLP--FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       219 ~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .++.+..+|+....  +++..||.|+.     ++++|..++.++.++|||||+|++..++
T Consensus       160 ~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~  214 (324)
T d2b25a1         160 DNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVN  214 (324)
T ss_dssp             CCEEEEESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred             cceeEEecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCC
Confidence            68999999997653  45678999986     5788999999999999999999987754

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1e-15  Score=129.08  Aligned_cols=115  Identities=23%  Similarity=0.346  Sum_probs=94.8

Q ss_pred             HHHHHHhh--cccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcc--CCCCeEEEEccCC
Q 021975          155 FKMAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVC  229 (304)
Q Consensus       155 ~~~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d~~  229 (304)
                      ...+.+.+  ...++.+|||||||+|+.+..+++. ++..+|+++|+++++++.|+++++..++.  ...++.++.+|..
T Consensus        63 ~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~  142 (224)
T d1i1na_          63 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR  142 (224)
T ss_dssp             HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred             HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc
Confidence            34555555  4567899999999999999888876 66779999999999999999999865521  2357899999998


Q ss_pred             CCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ..+..++.||+|++..+++|+++      ++.+.|||||++++...
T Consensus       143 ~~~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         143 MGYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             GCCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred             cccchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEEEc
Confidence            87777889999999999999863      47789999999998653

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.9e-16  Score=134.80  Aligned_cols=113  Identities=19%  Similarity=0.333  Sum_probs=85.2

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCC--------------------------
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT--------------------------  218 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~--------------------------  218 (304)
                      .++.+|||||||+|.++..++..+ ..+|+|+|+|+.+++.|+++++.......                          
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            356789999999999887777664 34799999999999999998875441000                          


Q ss_pred             CCe-EEEE----ccCCCCCCCCCccceEEecchhccCC----CHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          219 SNL-ALVR----ADVCRLPFASGFVDAVHAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       219 ~~i-~~~~----~d~~~lp~~~~~fD~V~~~~vl~h~~----d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ..+ ....    .+....+++.++||+|++.++|||+.    ++..+++++.++|||||++++.++...
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~  197 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRL  197 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccc
Confidence            000 1111    12223457788999999999999996    456799999999999999999998763

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.6e-15  Score=135.15  Aligned_cols=122  Identities=12%  Similarity=0.157  Sum_probs=98.2

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-------CccCCCCeEEEE
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-------NTILTSNLALVR  225 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~~~~~~i~~~~  225 (304)
                      .....+.+.+...++.+|||||||+|.++..+++..+..+++|+|+++.+++.|++..+..       +. ...++.+++
T Consensus       138 ~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~-~~~~i~~~~  216 (328)
T d1nw3a_         138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK-KHAEYTLER  216 (328)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTC-CCCCEEEEE
T ss_pred             HHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccc-cCCceEEEE
Confidence            3455566677777899999999999999999988866668999999999999998876542       11 246799999


Q ss_pred             ccCCCCCCCCCccc--eEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          226 ADVCRLPFASGFVD--AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       226 ~d~~~lp~~~~~fD--~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +|+.++++.+..+|  +|++ +.+.|.++....|.++.+.|||||+++.....
T Consensus       217 gd~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~  268 (328)
T d1nw3a_         217 GDFLSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  268 (328)
T ss_dssp             CCTTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             CcccccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence            99999887766664  5554 55678888889999999999999999876543

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.57  E-value=8.6e-15  Score=122.99  Aligned_cols=108  Identities=16%  Similarity=0.153  Sum_probs=90.9

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      ....+.+.+...++.+|||||||+|+++..+++...  +|+++|+++.+++.|++++...     .++.++.+|......
T Consensus        58 ~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~--~V~aiE~~~~~~~~A~~~~~~~-----~nv~~~~~d~~~g~~  130 (224)
T d1vbfa_          58 LGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYY-----NNIKLILGDGTLGYE  130 (224)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTC-----SSEEEEESCGGGCCG
T ss_pred             hHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhc--ccccccccHHHHHHHHHHHhcc-----cccccccCchhhcch
Confidence            344566778888899999999999999999998875  9999999999999999987643     689999999866444


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ..++||+|++..+++++++      .+.+.|||||+|++..
T Consensus       131 ~~~pfD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         131 EEKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILPI  165 (224)
T ss_dssp             GGCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred             hhhhHHHHHhhcchhhhhH------HHHHhcCCCCEEEEEE
Confidence            5678999999999998863      4667899999998853

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=1.3e-14  Score=129.17  Aligned_cols=105  Identities=19%  Similarity=0.344  Sum_probs=90.1

Q ss_pred             cccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEE
Q 021975          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (304)
                      ...++.+|||||||+|.++..+++.|. .+|+|+|.++ ++..|++..+.++  ...++.++.+++.++++++.+||+|+
T Consensus        35 ~~~~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~-~~~~a~~~~~~~~--~~~~i~~i~~~~~~l~~~~~~~D~i~  110 (328)
T d1g6q1_          35 DLFKDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSS-IIEMAKELVELNG--FSDKITLLRGKLEDVHLPFPKVDIII  110 (328)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESST-HHHHHHHHHHHTT--CTTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred             ccCCcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCH-HHHHHHHHHHHhC--ccccceEEEeehhhccCcccceeEEE
Confidence            334688999999999999999998873 5899999997 6788888888887  57889999999999999999999999


Q ss_pred             ecch---hccCCCHHHHHHHHHHhcccCcEEE
Q 021975          243 AGAA---LHCWPSPSNAVAEISRILRSGGVFV  271 (304)
Q Consensus       243 ~~~v---l~h~~d~~~~l~~~~r~LkpgG~lv  271 (304)
                      +..+   +.+......++.++.++|||||+++
T Consensus       111 se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            8554   4455677889999999999999886

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9.7e-15  Score=126.09  Aligned_cols=113  Identities=20%  Similarity=0.235  Sum_probs=83.5

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccC---------------------------
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL---------------------------  217 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~---------------------------  217 (304)
                      .++.+|||||||+|.+....+... ..+|+|+|+|+.|++.++++++......                           
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  131 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence            457899999999998765444443 2389999999999999998775432000                           


Q ss_pred             CCCeEEEEccCCC------CCCCCCccceEEecchhccCC----CHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          218 TSNLALVRADVCR------LPFASGFVDAVHAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       218 ~~~i~~~~~d~~~------lp~~~~~fD~V~~~~vl~h~~----d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      .........|+..      .+...++||+|++.++|||++    ++..+++++.++|||||+|++.++...
T Consensus       132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~  202 (263)
T d2g72a1         132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE  202 (263)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC
T ss_pred             hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Confidence            0012344556533      234467899999999999996    456889999999999999999887653

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=4.7e-14  Score=124.91  Aligned_cols=103  Identities=17%  Similarity=0.284  Sum_probs=87.5

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      .++.+|||||||+|.++..+++.|. .+|+|+|.++. ...+++..+.++  ...++.++++|+.+++++.++||+|++.
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~-~~~a~~~~~~n~--~~~~v~~~~~~~~~~~~~~~~~D~ivs~  107 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSI-SDYAVKIVKANK--LDHVVTIIKGKVEEVELPVEKVDIIISE  107 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTT-HHHHHHHHHHTT--CTTTEEEEESCTTTCCCSSSCEEEEEEC
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHH-HhhhhhHHHHhC--CccccceEeccHHHcccccceeEEEeee
Confidence            4688999999999999999999874 48999999975 567777777777  5678999999999999988999999986


Q ss_pred             chhccC---CCHHHHHHHHHHhcccCcEEE
Q 021975          245 AALHCW---PSPSNAVAEISRILRSGGVFV  271 (304)
Q Consensus       245 ~vl~h~---~d~~~~l~~~~r~LkpgG~lv  271 (304)
                      .+.+++   .....++.++.++|||||.++
T Consensus       108 ~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         108 WMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            555444   467889999999999999987

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=7.8e-14  Score=117.42  Aligned_cols=119  Identities=14%  Similarity=0.141  Sum_probs=95.0

Q ss_pred             HHHHHHHHHh---hcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975          152 DEEFKMAQEY---FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (304)
Q Consensus       152 ~~~~~~l~~~---l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (304)
                      .++...+..-   +...++.+|||+|||+|.++..+++. |+.++|+|+|+++.+++.++++.+..     .++..+..|
T Consensus        56 SKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~-----~~~~~i~~d  130 (227)
T d1g8aa_          56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILGD  130 (227)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEECC
T ss_pred             cHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc-----CCceEEEEE
Confidence            3455555433   44678999999999999999999987 77889999999999999999987653     467888888


Q ss_pred             CCCC---CCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          228 VCRL---PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       228 ~~~l---p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ....   +.....+|+|++  .+.|..++..+++++.+.|||||+++++....
T Consensus       131 ~~~~~~~~~~~~~vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~  181 (227)
T d1g8aa_         131 ATKPEEYRALVPKVDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVKSR  181 (227)
T ss_dssp             TTCGGGGTTTCCCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             CCCcccccccccceEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEECC
Confidence            7553   234457787765  46677788899999999999999999987654

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1e-13  Score=122.39  Aligned_cols=111  Identities=20%  Similarity=0.296  Sum_probs=89.5

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCc
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (304)
                      +.......++.+|||||||+|.++..+++.|. .+|+|+|.++.+.. +++....++  ...++.++.+|+.+++++..+
T Consensus        27 i~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~-a~~~~~~~~--~~~~i~~~~~~~~~l~~~~~~  102 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQ-AMDIIRLNK--LEDTITLIKGKIEEVHLPVEK  102 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHH-HHHHHHHTT--CTTTEEEEESCTTTSCCSCSC
T ss_pred             HHhccccCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHH-HHHHHHHhC--CCccceEEEeeHHHhcCcccc
Confidence            44434445688999999999999999999874 58999999998764 555566666  568899999999999988899


Q ss_pred             cceEEecchhccCC---CHHHHHHHHHHhcccCcEEEE
Q 021975          238 VDAVHAGAALHCWP---SPSNAVAEISRILRSGGVFVG  272 (304)
Q Consensus       238 fD~V~~~~vl~h~~---d~~~~l~~~~r~LkpgG~lvi  272 (304)
                      ||+|++..+.+++.   .+..++....++|||||+++-
T Consensus       103 ~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         103 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             ceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            99999976655554   345778888899999999873

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.49  E-value=1.2e-13  Score=115.20  Aligned_cols=112  Identities=14%  Similarity=0.154  Sum_probs=95.3

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      .....+.+.+...++.+|||||||+|+.+..+++.. +.+|+++|.++.+++.|+++++..+   ..++.++++|.....
T Consensus        65 ~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g---~~nv~~~~gd~~~g~  140 (215)
T d1jg1a_          65 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAG---VKNVHVILGDGSKGF  140 (215)
T ss_dssp             HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCC
T ss_pred             hhHHHHHHhhccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcC---CceeEEEECccccCC
Confidence            345667778888889999999999999999888762 2389999999999999999999987   489999999998765


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ...+.||.|++...++++++.      +...|||||++++..
T Consensus       141 ~~~~pfD~Iiv~~a~~~ip~~------l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         141 PPKAPYDVIIVTAGAPKIPEP------LIEQLKIGGKLIIPV  176 (215)
T ss_dssp             GGGCCEEEEEECSBBSSCCHH------HHHTEEEEEEEEEEE
T ss_pred             cccCcceeEEeecccccCCHH------HHHhcCCCCEEEEEE
Confidence            567899999999999987643      567899999998754

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.41  E-value=5.4e-13  Score=111.90  Aligned_cols=114  Identities=24%  Similarity=0.337  Sum_probs=89.5

Q ss_pred             HHHHHhh--cccCCCeEEEEcCCccHHHHHHHHh-C-----CCCeEEEEeCCHHHHHHHHHHHHhcCcc--CCCCeEEEE
Q 021975          156 KMAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKS-G-----TYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVR  225 (304)
Q Consensus       156 ~~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~-~-----~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~~~i~~~~  225 (304)
                      ..+.+.+  ...++.+|||||||+|+++..+++. +     +..+|+++|+++++++.|++++...+..  ...++.++.
T Consensus        68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~  147 (223)
T d1r18a_          68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  147 (223)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence            4555555  4567899999999999999888765 1     2348999999999999999886543210  135899999


Q ss_pred             ccCCCCCCCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       226 ~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +|......+.+.||.|++..+++++++      .+.+.|||||++++..-
T Consensus       148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         148 GDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPVG  191 (223)
T ss_dssp             SCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred             cccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEEe
Confidence            999876666789999999999998864      46789999999988653

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.39  E-value=4.4e-13  Score=109.81  Aligned_cols=118  Identities=16%  Similarity=0.262  Sum_probs=97.0

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---  232 (304)
                      +.+.+++.+.++..+||++||+|.++..+.+..++++|+|+|.++.+++.|+++++..+    .++.++++++.++.   
T Consensus        13 ~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~----~r~~~~~~~f~~~~~~~   88 (192)
T d1m6ya2          13 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS----DRVSLFKVSYREADFLL   88 (192)
T ss_dssp             HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT----TTEEEEECCGGGHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc----ccccchhHHHhhHHHHH
Confidence            34566777888999999999999999999998888899999999999999999988765    78999999987642   


Q ss_pred             --CCCCccceEEecchh--c-------cCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 --FASGFVDAVHAGAAL--H-------CWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 --~~~~~fD~V~~~~vl--~-------h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                        +..++||.|+....+  .       .+......|..+.++|+|||.+++.++..
T Consensus        89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence              445789999876443  1       12233467899999999999999999765

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=2.1e-12  Score=111.28  Aligned_cols=116  Identities=14%  Similarity=0.173  Sum_probs=91.3

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC
Q 021975          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (304)
Q Consensus       154 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (304)
                      +.+....... ..+.+|||+|||+|..+..++...+..+|+++|+|+.+++.|+++.+.+++   .++.++++|+.. ++
T Consensus        97 lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~---~~v~~~~~d~~~-~~  171 (274)
T d2b3ta1          97 LVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDWFS-AL  171 (274)
T ss_dssp             HHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCSTTG-GG
T ss_pred             hhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc---ccceeeeccccc-cc
Confidence            3444444433 345689999999999999999999899999999999999999999998872   579999999876 45


Q ss_pred             CCCccceEEecch-------------hccCCC------------HHHHHHHHHHhcccCcEEEEEE
Q 021975          234 ASGFVDAVHAGAA-------------LHCWPS------------PSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       234 ~~~~fD~V~~~~v-------------l~h~~d------------~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ++.+||+|+++--             +.|-|.            ...++.++.++|+|||.+++..
T Consensus       172 ~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi  237 (274)
T d2b3ta1         172 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  237 (274)
T ss_dssp             TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence            5779999999622             222221            1257888899999999998853

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=8.9e-13  Score=119.45  Aligned_cols=122  Identities=8%  Similarity=0.037  Sum_probs=88.2

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc------cCCCCeEE-EE
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT------ILTSNLAL-VR  225 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~------~~~~~i~~-~~  225 (304)
                      ..+..+.+.+...++.++||||||+|..+..++...+..+++|+|+++.+++.|+++.+..+.      .......+ ..
T Consensus       203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            345566667777889999999999999999999885456899999999999999998764320      01122333 34


Q ss_pred             ccCCCCCCCC---CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          226 ADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       226 ~d~~~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +++...+..+   ..+|+|++.. +.|.++....|.++.+.|||||+|+....
T Consensus       283 ~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~  334 (406)
T d1u2za_         283 KSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKS  334 (406)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             echhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence            4444332111   2457777654 56778888999999999999999988653

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.35  E-value=2.2e-12  Score=110.58  Aligned_cols=104  Identities=16%  Similarity=0.222  Sum_probs=88.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ++.+|||+|||+|.++..+++.+ .++|+++|+++.+++.++++++.++  ...++.++++|+..++. .+.||.|++..
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~--l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~  182 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNK--VEDRMSAYNMDNRDFPG-ENIADRILMGY  182 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCTTTCCC-CSCEEEEEECC
T ss_pred             CccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhC--CCceEEEEEcchHHhcc-CCCCCEEEECC
Confidence            48899999999999999999886 4599999999999999999999998  46779999999988763 57899998853


Q ss_pred             hhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .    +....++.++.++||+||++.+.....
T Consensus       183 p----~~~~~~l~~a~~~l~~gG~lh~~~~~~  210 (260)
T d2frna1         183 V----VRTHEFIPKALSIAKDGAIIHYHNTVP  210 (260)
T ss_dssp             C----SSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             C----CchHHHHHHHHhhcCCCCEEEEEeccc
Confidence            2    344567889999999999997766543

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.32  E-value=3.9e-12  Score=108.10  Aligned_cols=101  Identities=19%  Similarity=0.208  Sum_probs=84.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      ....+|||||||+|.++..++++.|+.+++.+|. |..++       ...  ...++.++.+|+.+ +.+  ..|+|++.
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~--~~~ri~~~~gd~~~-~~p--~~D~~~l~  146 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAP--PLSGIEHVGGDMFA-SVP--QGDAMILK  146 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCC--CCTTEEEEECCTTT-CCC--CEEEEEEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccC--CCCCeEEecCCccc-ccc--cceEEEEe
Confidence            4457899999999999999999999999999997 44443       222  35789999999865 444  35999999


Q ss_pred             chhccCCCHH--HHHHHHHHhcccCcEEEEEEeCCC
Q 021975          245 AALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       245 ~vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++||+++|..  .+|+++++.|+|||+|++.+...+
T Consensus       147 ~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~  182 (244)
T d1fp1d2         147 AVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP  182 (244)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             hhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEec
Confidence            9999998765  789999999999999999997653

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=1.9e-12  Score=114.40  Aligned_cols=110  Identities=19%  Similarity=0.224  Sum_probs=87.7

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC----CCCCCccc
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVD  239 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD  239 (304)
                      ..++.+|||++||+|.++.+++..+.  +|+++|+|+.+++.++++++.+++   .++.++++|+.+.    +...++||
T Consensus       143 ~~~g~rVLDl~~gtG~~s~~~a~g~~--~V~~vD~s~~al~~a~~n~~~ngl---~~~~~i~~d~~~~~~~~~~~~~~fD  217 (318)
T d1wxxa2         143 RFRGERALDVFSYAGGFALHLALGFR--EVVAVDSSAEALRRAEENARLNGL---GNVRVLEANAFDLLRRLEKEGERFD  217 (318)
T ss_dssp             GCCEEEEEEETCTTTHHHHHHHHHEE--EEEEEESCHHHHHHHHHHHHHTTC---TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             HhCCCeeeccCCCCcHHHHHHHhcCC--cEEeecchHHHHHHHHHHHHHcCC---CCcceeeccHHHHhhhhHhhhcCCC
Confidence            34678999999999999999887655  999999999999999999999883   6799999998652    34467899


Q ss_pred             eEEecchh---------ccCCCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          240 AVHAGAAL---------HCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       240 ~V~~~~vl---------~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      +|++.---         ....+...++..+.++|||||+|++++....
T Consensus       218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~  265 (318)
T d1wxxa2         218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH  265 (318)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            99985321         1111234678899999999999999887653

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.29  E-value=3.4e-12  Score=113.03  Aligned_cols=112  Identities=16%  Similarity=0.191  Sum_probs=89.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC----CCCCCCccceE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVDAV  241 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~fD~V  241 (304)
                      ++.+|||+|||+|.++..++..+. .+|+++|+++.+++.++++++.++  ...+++++++|+.+    ++....+||+|
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ng--l~~~~~~~~~d~~~~~~~~~~~~~~fD~V  221 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNG--VEDRMKFIVGSAFEEMEKLQKKGEKFDIV  221 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcC--CCccceeeechhhhhhHHHHhccCCCCch
Confidence            478999999999999999998874 589999999999999999999998  45689999999854    23346789999


Q ss_pred             Eecchhcc---------CCCHHHHHHHHHHhcccCcEEEEEEeCCCCC
Q 021975          242 HAGAALHC---------WPSPSNAVAEISRILRSGGVFVGTTFLRYTS  280 (304)
Q Consensus       242 ~~~~vl~h---------~~d~~~~l~~~~r~LkpgG~lvi~~~~~~~~  280 (304)
                      ++.---..         ..+...++..+.++|||||+|++++....-+
T Consensus       222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~  269 (324)
T d2as0a2         222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD  269 (324)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC
T ss_pred             hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCC
Confidence            98532111         1122457888999999999999998776433

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.21  E-value=2.6e-11  Score=95.51  Aligned_cols=108  Identities=18%  Similarity=0.214  Sum_probs=83.6

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CCCCCCccceEEec
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHAG  244 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~~~  244 (304)
                      .+.+|||+|||+|.++..++.+|. .+|+++|.++.+++.++++++..+  ...++.++++|+.. +....++||+|++.
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~--~~~~~~ii~~D~~~~l~~~~~~fDiIf~D   90 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTK--AENRFTLLKMEAERAIDCLTGRFDLVFLD   90 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTT--CGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcc--cccchhhhcccccccccccccccceeEec
Confidence            578999999999999998888875 599999999999999999999887  56779999999866 34457789999985


Q ss_pred             chhccCCCHHHHHHHHH--HhcccCcEEEEEEeCC
Q 021975          245 AALHCWPSPSNAVAEIS--RILRSGGVFVGTTFLR  277 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~--r~LkpgG~lvi~~~~~  277 (304)
                      --... ......+..+.  ++|+|||.+++.....
T Consensus        91 PPy~~-~~~~~~l~~i~~~~~L~~~g~iiiE~~~~  124 (152)
T d2esra1          91 PPYAK-ETIVATIEALAAKNLLSEQVMVVCETDKT  124 (152)
T ss_dssp             CSSHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             hhhcc-chHHHHHHHHHHCCCcCCCeEEEEEeCCC
Confidence            32110 11124455554  4699999998876543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.20  E-value=1.9e-11  Score=98.21  Aligned_cols=122  Identities=16%  Similarity=0.222  Sum_probs=82.5

Q ss_pred             CCcHHHHHHHHHhhcc--cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc
Q 021975          149 PGPDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (304)
                      |..+...+.+.+.+..  .++.+|||+|||+|.++..++..|.  +++++|.++.+++.++++++..+  ...++....+
T Consensus        22 pt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga--~vv~vD~~~~a~~~~~~N~~~~~--~~~~v~~~~~   97 (171)
T d1ws6a1          22 PSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTG--LGARVVALPV   97 (171)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHT--CCCEEECSCH
T ss_pred             CCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccc--hhhhcccCHHHHhhhhHHHHhhc--cccceeeeeh
Confidence            3444444444444432  4578999999999999999888886  89999999999999999999887  3344444444


Q ss_pred             cCC--CCCCCCCccceEEecchhccCCCHHHHHHHHH--HhcccCcEEEEEEeC
Q 021975          227 DVC--RLPFASGFVDAVHAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTFL  276 (304)
Q Consensus       227 d~~--~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~--r~LkpgG~lvi~~~~  276 (304)
                      |..  .......+||+|++.--.+.  +....+.++.  .+|+|||++++....
T Consensus        98 d~~~~~~~~~~~~fD~If~DPPY~~--~~~~~l~~l~~~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1          98 EVFLPEAKAQGERFTVAFMAPPYAM--DLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCTTS--CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             hcccccccccCCccceeEEcccccc--CHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence            431  11234578999998533221  2223344443  479999998876543

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=2.7e-11  Score=100.75  Aligned_cols=122  Identities=12%  Similarity=0.242  Sum_probs=91.9

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (304)
                      .+.-+++...+...+..+|||||||+|..+..+++.. .+++++++|+++.+.+.|+++++..+  ...+++++.+|..+
T Consensus        42 ~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g--l~~~i~l~~Gd~~e  119 (214)
T d2cl5a1          42 DAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG--LQDKVTILNGASQD  119 (214)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC--CCccceeeeccccc
Confidence            3444556666666667899999999999999999873 45799999999999999999999888  56789999999865


Q ss_pred             C-C-----CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          231 L-P-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       231 l-p-----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      . +     +..+.||+|+..+.-+.. .....+.+..++|||||++++-...
T Consensus       120 ~l~~l~~~~~~~~~D~ifiD~~~~~~-~~~~~l~~~~~lLkpGGvIv~Ddvl  170 (214)
T d2cl5a1         120 LIPQLKKKYDVDTLDMVFLDHWKDRY-LPDTLLLEKCGLLRKGTVLLADNVI  170 (214)
T ss_dssp             HGGGHHHHSCCCCEEEEEECSCGGGH-HHHHHHHHHTTCEEEEEEEEESCCC
T ss_pred             cccchhhcccccccceeeeccccccc-ccHHHHHHHhCccCCCcEEEEeCcC
Confidence            3 2     345689999986421111 1223577778899999987764433

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.16  E-value=4.5e-11  Score=101.38  Aligned_cols=99  Identities=17%  Similarity=0.223  Sum_probs=82.6

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ...+|||||||+|.++..++++.|+.++++.|. +..++.+       +  ...++.++.+|+.+ +.+  .+|++++.+
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~--~~~rv~~~~gD~f~-~~p--~aD~~~l~~  146 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL-------S--GSNNLTYVGGDMFT-SIP--NADAVLLKY  146 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------C--CBTTEEEEECCTTT-CCC--CCSEEEEES
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC-------c--ccCceEEEecCccc-CCC--CCcEEEEEe
Confidence            346899999999999999999999999999998 4444332       2  35889999999976 333  579999999


Q ss_pred             hhccCCCHH--HHHHHHHHhcccC---cEEEEEEeCC
Q 021975          246 ALHCWPSPS--NAVAEISRILRSG---GVFVGTTFLR  277 (304)
Q Consensus       246 vl~h~~d~~--~~l~~~~r~Lkpg---G~lvi~~~~~  277 (304)
                      +||+++|..  ++|+++++.|+||   |++++.+..-
T Consensus       147 vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~  183 (244)
T d1fp2a2         147 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI  183 (244)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred             ecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeec
Confidence            999999885  7899999999998   7788877654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.15  E-value=5e-11  Score=104.90  Aligned_cols=111  Identities=14%  Similarity=0.111  Sum_probs=86.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC----CCCCCccceE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDAV  241 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~V  241 (304)
                      ++.+|||++||+|.++.+++..+. .+|+++|+|+.+++.++++++.+++ ...++.++++|+.+.    .-...+||+|
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga-~~V~~vD~s~~a~~~a~~N~~~n~l-~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHL-DMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTC-CCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCCC-ceEEEecCCHHHHHHHHHHHHHhcc-cCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            478999999999999988887663 5899999999999999999998884 246799999998542    2235689999


Q ss_pred             Eecch-----hccC----CCHHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          242 HAGAA-----LHCW----PSPSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       242 ~~~~v-----l~h~----~d~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ++.--     -..+    .+...+++.+.++|+|||+|++++....
T Consensus       222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~  267 (317)
T d2b78a2         222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  267 (317)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            98421     0111    1334688899999999999999987653

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.5e-10  Score=96.49  Aligned_cols=120  Identities=15%  Similarity=0.099  Sum_probs=96.0

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      +...++..+....+.++|||||||+|+.+..+++..+ +++++.+|.++...+.|+++++..+  ...++.++.+|+.+.
T Consensus        46 ~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag--~~~~i~~~~Gda~e~  123 (219)
T d2avda1          46 EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE--AEHKIDLRLKPALET  123 (219)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT--CTTTEEEEESCHHHH
T ss_pred             HHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC--ccceEEEEEeehhhc
Confidence            4455566666666678999999999999999998743 6799999999999999999999988  578899999997442


Q ss_pred             -C-----CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          232 -P-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       232 -p-----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                       +     ...++||+|+..+-=   .+....++.+.++|+|||++++-....
T Consensus       124 l~~~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~l~  172 (219)
T d2avda1         124 LDELLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRVLW  172 (219)
T ss_dssp             HHHHHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             chhhhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence             1     235689999996522   344667899999999999998866543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.13  E-value=1.2e-10  Score=95.14  Aligned_cols=70  Identities=19%  Similarity=0.283  Sum_probs=60.0

Q ss_pred             cccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEE
Q 021975          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (304)
                      ....+++|||+|||+|.++..++..+. .+|+|+|+++.+++.|+++.        .++.++++|+.+++   +.||+|+
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~--------~~~~~~~~D~~~l~---~~fD~Vi  112 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNC--------GGVNFMVADVSEIS---GKYDTWI  112 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHC--------TTSEEEECCGGGCC---CCEEEEE
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHcc--------ccccEEEEehhhcC---CcceEEE
Confidence            344688999999999999988888874 48999999999999999864        56889999998764   6899999


Q ss_pred             ec
Q 021975          243 AG  244 (304)
Q Consensus       243 ~~  244 (304)
                      ++
T Consensus       113 ~N  114 (197)
T d1ne2a_         113 MN  114 (197)
T ss_dssp             EC
T ss_pred             eC
Confidence            96

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.12  E-value=1.7e-10  Score=94.29  Aligned_cols=109  Identities=12%  Similarity=0.131  Sum_probs=75.4

Q ss_pred             cCCCeEEEEcCCccHHHHHH----HHh----CCCCeEEEEeCCHHHHHHHHHHH------------------HhcCc---
Q 021975          165 AQGGLLVDVSCGSGLFSRKF----AKS----GTYSGVVALDFSENMLRQCYDFI------------------KQDNT---  215 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l----~~~----~~~~~v~giD~s~~~~~~a~~~~------------------~~~~~---  215 (304)
                      .+..+||++|||+|.-...+    .+.    ....+++|+|+++.+++.|++..                  ...+.   
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            34568999999999843332    322    22347999999999999997422                  01000   


Q ss_pred             -------cCCCCeEEEEccCCCC-CCCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEE
Q 021975          216 -------ILTSNLALVRADVCRL-PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       216 -------~~~~~i~~~~~d~~~l-p~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~  273 (304)
                             .....+.+...+.... +.+.+.||+|+|.+||.+++.+  .++++.+++.|+|||+|++.
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                   0012234555555443 2345789999999999999876  47999999999999998875

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.12  E-value=7.8e-11  Score=102.66  Aligned_cols=119  Identities=10%  Similarity=0.002  Sum_probs=88.2

Q ss_pred             HHHHHhhc-ccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC---
Q 021975          156 KMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---  231 (304)
Q Consensus       156 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---  231 (304)
                      +.+.+.+. ..++.+|||++||+|.++..++..|.  +|+++|.|+.+++.|+++++.+++ ...++.++++|+.+.   
T Consensus       121 ~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA--~V~~VD~s~~al~~a~~N~~ln~~-~~~~~~~i~~D~~~~l~~  197 (309)
T d2igta1         121 EWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGL-EQAPIRWICEDAMKFIQR  197 (309)
T ss_dssp             HHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTC-TTSCEEEECSCHHHHHHH
T ss_pred             HHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCC--eEEEEeChHHHHHHHHHhhhhhcc-cCCcEEEEeCCHHHhHHH
Confidence            34444443 24578999999999999999998876  999999999999999999998874 234699999998653   


Q ss_pred             -CCCCCccceEEec---chh------ccC-CCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          232 -PFASGFVDAVHAG---AAL------HCW-PSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       232 -p~~~~~fD~V~~~---~vl------~h~-~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                       ......||+|++.   +..      ..+ .+...+++.+..+|+|||.+++.+.+.
T Consensus       198 ~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s  254 (309)
T d2igta1         198 EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  254 (309)
T ss_dssp             HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             HhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence             1235789999983   111      001 123456778889999999877776554

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=2.9e-10  Score=93.47  Aligned_cols=91  Identities=14%  Similarity=0.245  Sum_probs=71.2

Q ss_pred             CCCcHHHHHHHH---HhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEE
Q 021975          148 FPGPDEEFKMAQ---EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV  224 (304)
Q Consensus       148 ~~~~~~~~~~l~---~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~  224 (304)
                      |+++......+.   .......+.+|||+|||+|.++..++..+. .+|+|+|+++.+++.++++++..+    .+..++
T Consensus        25 y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~----~~~~~~   99 (201)
T d1wy7a1          25 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFK----GKFKVF   99 (201)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGT----TSEEEE
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcC----CCceEE
Confidence            445555443332   233445688999999999999998888774 589999999999999999988765    678999


Q ss_pred             EccCCCCCCCCCccceEEecch
Q 021975          225 RADVCRLPFASGFVDAVHAGAA  246 (304)
Q Consensus       225 ~~d~~~lp~~~~~fD~V~~~~v  246 (304)
                      .+|...+   .+.||+|+++--
T Consensus       100 ~~d~~~~---~~~fD~Vi~nPP  118 (201)
T d1wy7a1         100 IGDVSEF---NSRVDIVIMNPP  118 (201)
T ss_dssp             ESCGGGC---CCCCSEEEECCC
T ss_pred             ECchhhh---CCcCcEEEEcCc
Confidence            9998775   467999998644

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.10  E-value=8.8e-11  Score=99.58  Aligned_cols=99  Identities=16%  Similarity=0.190  Sum_probs=81.3

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ...+|||||||+|.++..++++.|+.+++++|..+ .++.+       .  ...++.++.+|+.+ +.+.  .|++++.+
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~-------~--~~~r~~~~~~d~~~-~~P~--ad~~~l~~  147 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDA-------P--SYPGVEHVGGDMFV-SIPK--ADAVFMKW  147 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTC-------C--CCTTEEEEECCTTT-CCCC--CSCEECSS
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhc-------c--cCCceEEecccccc-cCCC--cceEEEEE
Confidence            35689999999999999999999999999999854 33222       2  35789999999865 4443  57889999


Q ss_pred             hhccCCCHH--HHHHHHHHhcccCcEEEEEEeCC
Q 021975          246 ALHCWPSPS--NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       246 vl~h~~d~~--~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ++|++++..  .+|+++++.|+|||++++.+...
T Consensus       148 vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~  181 (243)
T d1kyza2         148 ICHDWSDEHCLKFLKNCYEALPDNGKVIVAECIL  181 (243)
T ss_dssp             SSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEE
T ss_pred             EeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEe
Confidence            999998654  78999999999999999988654

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.06  E-value=8.8e-10  Score=94.37  Aligned_cols=120  Identities=15%  Similarity=0.157  Sum_probs=87.6

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      +.+.+.+.+........+++|+|||+|..+..+++. ++.+|+++|+|+.+++.|+++.+.++  ...++.+..+|+...
T Consensus        96 E~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~~~~v~a~Dis~~Al~~A~~Na~~~~--~~~~~~i~~~~~~~~  172 (271)
T d1nv8a_          96 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHG--VSDRFFVRKGEFLEP  172 (271)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTT--CTTSEEEEESSTTGG
T ss_pred             hhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-ccceeeechhhhhHHHHHHHHHHHcC--CCceeEEeecccccc
Confidence            445566666665556678999999999999888764 57899999999999999999999988  567788889988663


Q ss_pred             -CCCCCccceEEecchh----ccC-----CCHH----------HHHHH-HHHhcccCcEEEEEE
Q 021975          232 -PFASGFVDAVHAGAAL----HCW-----PSPS----------NAVAE-ISRILRSGGVFVGTT  274 (304)
Q Consensus       232 -p~~~~~fD~V~~~~vl----~h~-----~d~~----------~~l~~-~~r~LkpgG~lvi~~  274 (304)
                       +...++||+|+++--.    +.+     .+|.          .++++ +.++|+|||++++-.
T Consensus       173 ~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei  236 (271)
T d1nv8a_         173 FKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  236 (271)
T ss_dssp             GGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             cccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence             2334789999996210    011     1232          22322 567899999877754

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.98  E-value=1.5e-09  Score=90.69  Aligned_cols=119  Identities=13%  Similarity=0.110  Sum_probs=94.5

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      +..+++..+....+..+|||||+++|+.+..+++..+ +++++.+|.++...+.|++.++..+  ...++.++.+++.+.
T Consensus        46 ~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g--~~~~i~~~~g~a~~~  123 (227)
T d1susa1          46 DEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG--VDHKIDFREGPALPV  123 (227)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--CGGGEEEEESCHHHH
T ss_pred             HHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc--cccceeeeehHHHHH
Confidence            3444555555555678999999999999999998743 6799999999999999999999988  567899999998542


Q ss_pred             -C------CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          232 -P------FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       232 -p------~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                       +      ...++||+|+..+-  + .+-...++.+.++|+|||++++-...
T Consensus       124 L~~l~~~~~~~~~fD~iFiDa~--k-~~y~~~~e~~~~ll~~gGiii~DNvl  172 (227)
T d1susa1         124 LDEMIKDEKNHGSYDFIFVDAD--K-DNYLNYHKRLIDLVKVGGVIGYDNTL  172 (227)
T ss_dssp             HHHHHHCGGGTTCBSEEEECSC--S-TTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred             HHHHHhccccCCceeEEEeccc--h-hhhHHHHHHHHhhcCCCcEEEEccCC
Confidence             2      12468999999652  1 34567889999999999988886543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=2e-09  Score=87.08  Aligned_cols=124  Identities=10%  Similarity=0.106  Sum_probs=91.3

Q ss_pred             CCcHHHHHHHHHhhcc-cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975          149 PGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (304)
                      |..+...+.+...+.. ..+.+|||++||+|.++..++.+|. ..|+.+|.++.+++.++++++..+   ..++.++.+|
T Consensus        25 Pt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~---~~~~~ii~~d  100 (183)
T d2fpoa1          25 PTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLK---AGNARVVNSN  100 (183)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSC
T ss_pred             cCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhcc---ccceeeeeec
Confidence            3444444455544432 3578999999999999999998884 589999999999999999998765   4678999999


Q ss_pred             CCCC-CCCCCccceEEecchhccCCCHHHHHHHHHH--hcccCcEEEEEEeCC
Q 021975          228 VCRL-PFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLR  277 (304)
Q Consensus       228 ~~~l-p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r--~LkpgG~lvi~~~~~  277 (304)
                      +... ......||+|++.--... ......+..+.+  +|+++|++++.....
T Consensus       101 ~~~~l~~~~~~fDlIf~DPPY~~-~~~~~~l~~l~~~~~L~~~~iIiiE~~~~  152 (183)
T d2fpoa1         101 AMSFLAQKGTPHNIVFVDPPFRR-GLLEETINLLEDNGWLADEALIYVESEVE  152 (183)
T ss_dssp             HHHHHSSCCCCEEEEEECCSSST-TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             ccccccccccccCEEEEcCcccc-chHHHHHHHHHHCCCCCCCeEEEEEecCc
Confidence            7542 334678999999654322 234566776665  699999999876543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.96  E-value=2.7e-09  Score=86.16  Aligned_cols=125  Identities=15%  Similarity=0.135  Sum_probs=95.0

Q ss_pred             CCcHHHHHHHHHhhcc-cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975          149 PGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (304)
                      |..+...+.+...+.. ..+.+|||++||+|.++..++..|. ..|+.+|.++.+++.++++++..+  ...++.++++|
T Consensus        23 Pt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~--~~~~~~i~~~D   99 (182)
T d2fhpa1          23 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITK--EPEKFEVRKMD   99 (182)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESC
T ss_pred             cCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhh--ccccccccccc
Confidence            5555666666666653 4688999999999999999999984 589999999999999999998877  45689999999


Q ss_pred             CCCC----CCCCCccceEEecchhccCCCHHHHHHHHHH--hcccCcEEEEEEeCC
Q 021975          228 VCRL----PFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLR  277 (304)
Q Consensus       228 ~~~l----p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r--~LkpgG~lvi~~~~~  277 (304)
                      +...    .-....||+|++.--.. ..+....+..+..  +|+++|++++-....
T Consensus       100 ~~~~l~~~~~~~~~fDlIflDPPY~-~~~~~~~l~~i~~~~~L~~~giIi~E~~~~  154 (182)
T d2fhpa1         100 ANRALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT  154 (182)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             chhhhhhhcccCCCcceEEechhhh-hhHHHHHHHHHHHCCCCCCCEEEEEEcCCC
Confidence            8652    12356899999864321 2344667777765  699999888765433

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=8.6e-09  Score=87.31  Aligned_cols=80  Identities=11%  Similarity=0.054  Sum_probs=66.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------CCCCccc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FASGFVD  239 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~~~fD  239 (304)
                      +..++||+|||+|.....++...++.+++|+|+++.+++.|+++++.++  ...++.++..+....-      ..+++||
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~--l~~~~~~~~~~~~~~~~~~~~~~~~~~fD  138 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN--LSDLIKVVKVPQKTLLMDALKEESEIIYD  138 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhC--CCcceeeeeeccHHhhhhhhhhcccCcee
Confidence            4568999999999999999988777899999999999999999999988  5778888876654321      2356899


Q ss_pred             eEEecchh
Q 021975          240 AVHAGAAL  247 (304)
Q Consensus       240 ~V~~~~vl  247 (304)
                      +|+|+--.
T Consensus       139 ~ivsNPPY  146 (250)
T d2h00a1         139 FCMCNPPF  146 (250)
T ss_dssp             EEEECCCC
T ss_pred             EEEecCcc
Confidence            99997543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.87  E-value=7e-09  Score=91.36  Aligned_cols=125  Identities=12%  Similarity=0.084  Sum_probs=91.8

Q ss_pred             CCCcHHHHHHHHH----hhcccCCCeEEEEcCCccHHHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHHHhcCccCC
Q 021975          148 FPGPDEEFKMAQE----YFKSAQGGLLVDVSCGSGLFSRKFAKS-----GTYSGVVALDFSENMLRQCYDFIKQDNTILT  218 (304)
Q Consensus       148 ~~~~~~~~~~l~~----~l~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~  218 (304)
                      +.+|..+.+.+..    ++...++.+|||.|||+|.++..+...     ....+++|+|+++.+++.|+.+....+    
T Consensus        95 ~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~----  170 (328)
T d2f8la1          95 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR----  170 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT----
T ss_pred             EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh----
Confidence            4556665554443    344556778999999999999887643     234579999999999999999887765    


Q ss_pred             CCeEEEEccCCCCCCCCCccceEEecchhccCCCH------------------HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          219 SNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP------------------SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       219 ~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~------------------~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ....+..+|..... ....||+|+++--+......                  ..++..+.+.|+|||++++..+..
T Consensus       171 ~~~~~~~~d~~~~~-~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         171 QKMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             CCCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             hhhhhhcccccccc-ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            56777787765533 46789999997544222111                  236999999999999999988765

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=3.6e-08  Score=80.82  Aligned_cols=102  Identities=21%  Similarity=0.178  Sum_probs=89.2

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecc
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (304)
                      ++.+|+|+|+|.|.-+.-++-..|+.+++.+|.+..-+...++.....++   .++.+++..+++.. .+.+||+|++..
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L---~nv~v~~~R~E~~~-~~~~fD~V~sRA  140 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL---ENIEPVQSRVEEFP-SEPPFDGVISRA  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC---SSEEEEECCTTTSC-CCSCEEEEECSC
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC---cceeeeccchhhhc-cccccceehhhh
Confidence            46799999999999999999888889999999999999999998888773   68999999999875 356899999977


Q ss_pred             hhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +    .....+++-+...++++|.+++..-
T Consensus       141 ~----~~~~~ll~~~~~~l~~~g~~~~~KG  166 (207)
T d1jsxa_         141 F----ASLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             S----SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             h----cCHHHHHHHHHHhcCCCcEEEEECC
Confidence            5    5678889999999999999988763

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.80  E-value=7.3e-09  Score=85.66  Aligned_cols=117  Identities=19%  Similarity=0.270  Sum_probs=87.9

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (304)
                      .+|..+.+++.+.+...++.+|||.|||+|.++..+.+. .....++|+|+++..+..            .....++.+|
T Consensus         2 ~TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~------------~~~~~~~~~~   69 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL------------PPWAEGILAD   69 (223)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC------------CTTEEEEESC
T ss_pred             CCCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh------------cccceeeeee
Confidence            457778888999988888999999999999999888765 434579999999865432            2346778888


Q ss_pred             CCCCCCCCCccceEEecchhccCC----------------------------C-HHHHHHHHHHhcccCcEEEEEEeCCC
Q 021975          228 VCRLPFASGFVDAVHAGAALHCWP----------------------------S-PSNAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~----------------------------d-~~~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      ..... ....||+|+++.......                            + ...+++...+.||+||++.+.++...
T Consensus        70 ~~~~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~  148 (223)
T d2ih2a1          70 FLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATW  148 (223)
T ss_dssp             GGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred             hhccc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeee
Confidence            76544 357899999875432211                            0 12467889999999999999987664

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.79  E-value=1.4e-08  Score=85.16  Aligned_cols=86  Identities=9%  Similarity=0.239  Sum_probs=70.3

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ...++.+.+.....++.+|||||||+|.++..+++.+.  +++++|+++.+++.+++++..     ..++.++.+|+.+.
T Consensus         7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~-----~~n~~i~~~D~l~~   79 (235)
T d1qama_           7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQF   79 (235)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGGC
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhc-----ccchhhhhhhhhhc
Confidence            44566777777777899999999999999999999876  999999999999999987653     36899999999888


Q ss_pred             CCCCCccceEEec
Q 021975          232 PFASGFVDAVHAG  244 (304)
Q Consensus       232 p~~~~~fD~V~~~  244 (304)
                      +++......|+++
T Consensus        80 ~~~~~~~~~vv~N   92 (235)
T d1qama_          80 KFPKNQSYKIFGN   92 (235)
T ss_dssp             CCCSSCCCEEEEE
T ss_pred             cccccccceeeee
Confidence            7665444445543

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=3e-08  Score=88.24  Aligned_cols=88  Identities=17%  Similarity=0.268  Sum_probs=73.8

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      +.+.+.+.+++...++.+|||+-||.|.++..|++.+.  +|+|+|.++.+++.|+++.+.++   ..++.++.++.+..
T Consensus       198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~n~---i~n~~~~~~~~~~~  272 (358)
T d1uwva2         198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNG---LQNVTFYHENLEED  272 (358)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCTTSC
T ss_pred             hHHHHHHHHhhccCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHhcc---cccceeeecchhhh
Confidence            44566677777777788999999999999999999876  99999999999999999999887   47899999998663


Q ss_pred             ----CCCCCccceEEec
Q 021975          232 ----PFASGFVDAVHAG  244 (304)
Q Consensus       232 ----p~~~~~fD~V~~~  244 (304)
                          ......+|+|+..
T Consensus       273 ~~~~~~~~~~~d~vilD  289 (358)
T d1uwva2         273 VTKQPWAKNGFDKVLLD  289 (358)
T ss_dssp             CSSSGGGTTCCSEEEEC
T ss_pred             hhhhhhhhccCceEEeC
Confidence                2234679999883

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.75  E-value=1.7e-08  Score=81.09  Aligned_cols=112  Identities=21%  Similarity=0.334  Sum_probs=87.6

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----  232 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----  232 (304)
                      .+.+.+.+.+++.++|..+|.|..+..+.+...  +|+|+|.++.+++.+++.       ...++.+++.++.++.    
T Consensus         9 Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~--~viaiD~D~~ai~~a~~~-------~~~~~~~~~~~f~~~~~~l~   79 (182)
T d1wg8a2           9 EALDLLAVRPGGVYVDATLGGAGHARGILERGG--RVIGLDQDPEAVARAKGL-------HLPGLTVVQGNFRHLKRHLA   79 (182)
T ss_dssp             HHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHT-------CCTTEEEEESCGGGHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccC--cEEEEhhhhhHHHHHhhc-------cccceeEeehHHHHHHHHHH
Confidence            345667778899999999999999999998754  999999999999999874       2368999999887643    


Q ss_pred             -CCCCccceEEecchh--ccCCCH-------HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 -FASGFVDAVHAGAAL--HCWPSP-------SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 -~~~~~fD~V~~~~vl--~h~~d~-------~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                       ...+.+|.|+....+  .++.++       ...|......|++||.+++.++..
T Consensus        80 ~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          80 ALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             HTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             HcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence             334679999985432  222222       346888899999999999999865

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.74  E-value=1.2e-08  Score=89.11  Aligned_cols=110  Identities=16%  Similarity=0.088  Sum_probs=83.8

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CccCCCCeEEEEccCCCC-CCCCCccceE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PFASGFVDAV  241 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p~~~~~fD~V  241 (304)
                      ...++||.||.|.|..+..+.+..+..+++++|+++.+++.|++.+...  +....++++++.+|+... .-.+++||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            3467999999999999999998876779999999999999999987432  111357899999998653 2235689999


Q ss_pred             EecchhccC-CC------HHHHHHHHHHhcccCcEEEEEE
Q 021975          242 HAGAALHCW-PS------PSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       242 ~~~~vl~h~-~d------~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +....=.+. ..      -.++++.+.+.|+|||++++..
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            974321111 11      1468999999999999998865

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.69  E-value=1.7e-08  Score=86.73  Aligned_cols=109  Identities=16%  Similarity=0.145  Sum_probs=82.0

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc-------cCCCCeEEEEccCCCCCCCCCc
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-------ILTSNLALVRADVCRLPFASGF  237 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-------~~~~~i~~~~~d~~~lp~~~~~  237 (304)
                      .+..+||.||+|.|..+..+.+.. ..+++.+|+++.+++.|++.+.....       ...++++++.+|+...--.+++
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSC-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCceEEEecCCchHHHHHHHHhC-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            456799999999999999988765 46899999999999999987643210       0247899999998653223578


Q ss_pred             cceEEecchhccCCCH-----HHHHHHHHHhcccCcEEEEEEe
Q 021975          238 VDAVHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ||+|++... .....+     .++++.+.+.|+|||++++...
T Consensus       150 yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~  191 (276)
T d1mjfa_         150 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  191 (276)
T ss_dssp             EEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence            999997543 211111     4789999999999999987653

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.66  E-value=2.2e-07  Score=74.63  Aligned_cols=126  Identities=13%  Similarity=0.126  Sum_probs=87.4

Q ss_pred             CCcHHHHHHHHHhhcc-cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEcc
Q 021975          149 PGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (304)
                      |..+...+.+...+.. ..+.+|||+.||+|.++.+...+|. ..|+.+|.+..+++..+++++..+. ......+...|
T Consensus        25 Pt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~-~~~~~~~~~~d  102 (183)
T d2ifta1          25 PTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKC-SSEQAEVINQS  102 (183)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTC-CTTTEEEECSC
T ss_pred             cCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhcc-ccccccccccc
Confidence            3344444455555542 3578999999999999999999984 6999999999999999999988762 12346666665


Q ss_pred             CCC---CCCCCCccceEEecchhccCCCHHHHHHHHHH--hcccCcEEEEEEeCC
Q 021975          228 VCR---LPFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLR  277 (304)
Q Consensus       228 ~~~---lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r--~LkpgG~lvi~~~~~  277 (304)
                      ..+   .......||+|++.--... ......+..+..  +|+++|++++-....
T Consensus       103 ~~~~l~~~~~~~~fDlIFlDPPY~~-~~~~~~l~~l~~~~~L~~~~liiiE~~~~  156 (183)
T d2ifta1         103 SLDFLKQPQNQPHFDVVFLDPPFHF-NLAEQAISLLCENNWLKPNALIYVETEKD  156 (183)
T ss_dssp             HHHHTTSCCSSCCEEEEEECCCSSS-CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             ccccccccccCCcccEEEechhHhh-hhHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence            422   2333557999999643222 223456776655  799999988876544

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.59  E-value=6.3e-08  Score=83.53  Aligned_cols=111  Identities=13%  Similarity=0.079  Sum_probs=83.8

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-ccCCCCeEEEEccCCCC-CCCCCccceEEe
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVHA  243 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (304)
                      ..++||-||.|.|..+..+.+..+..+++++|+++.+++.+++.+.... ....++++++.+|+... .-.++.||+|++
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  168 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  168 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence            4679999999999999999998766799999999999999999775421 11357899999998542 223568999998


Q ss_pred             cchhccC-C----CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          244 GAALHCW-P----SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       244 ~~vl~h~-~----d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ...-... +    --.++++.+.+.|+|||++++....
T Consensus       169 D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         169 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             cCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence            5322111 1    1247899999999999999887643

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.57  E-value=1.6e-07  Score=81.80  Aligned_cols=130  Identities=15%  Similarity=0.147  Sum_probs=97.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (304)
                      .+....+.+.++.+|||+++|.|.=+.+++... ..+.+++.|.++.-++..+++++..+   ..++.++..|...++..
T Consensus       106 ~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~---~~~i~~~~~d~~~~~~~  182 (313)
T d1ixka_         106 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG---VLNVILFHSSSLHIGEL  182 (313)
T ss_dssp             HHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT---CCSEEEESSCGGGGGGG
T ss_pred             cchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH---hhccccccccccccccc
Confidence            344455677789999999999999888887663 35689999999999999999998887   36788888887777666


Q ss_pred             CCccceEEec------chhccCCCH----------------HHHHHHHHHhcccCcEEEEEEeCCCCCCccccccc
Q 021975          235 SGFVDAVHAG------AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV  288 (304)
Q Consensus       235 ~~~fD~V~~~------~vl~h~~d~----------------~~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~~~~~  288 (304)
                      ...||.|+..      +++..-++.                .++|.+..+.|||||+++-+|-.-....+..+...
T Consensus       183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~  258 (313)
T d1ixka_         183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQW  258 (313)
T ss_dssp             CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHH
T ss_pred             cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHH
Confidence            7889999973      334332221                14688999999999999999877655554444433

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.57  E-value=2.8e-09  Score=89.96  Aligned_cols=93  Identities=11%  Similarity=0.241  Sum_probs=74.3

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      ..++.+.+.+...++.+|||||||+|.++..|++.+.  +|+++|+++.+++.+++++..     ..++.++.+|+.+++
T Consensus        16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~-----~~n~~ii~~D~l~~~   88 (245)
T d1yuba_          16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQ   88 (245)
T ss_dssp             TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTT
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhh-----ccchhhhhhhhhccc
Confidence            3456677777777788999999999999999999987  999999999998888775542     368999999999988


Q ss_pred             CCCCccceEEecchhccCCCH
Q 021975          233 FASGFVDAVHAGAALHCWPSP  253 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~  253 (304)
                      ++...++.|+++.- .|+..+
T Consensus        89 ~~~~~~~~vv~NLP-Y~Ist~  108 (245)
T d1yuba_          89 FPNKQRYKIVGNIP-YHLSTQ  108 (245)
T ss_dssp             CCCSSEEEEEEECC-SSSCHH
T ss_pred             cccceeeeEeeeee-hhhhHH
Confidence            88777777776554 344433

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.56  E-value=3.2e-07  Score=83.38  Aligned_cols=147  Identities=16%  Similarity=0.143  Sum_probs=106.9

Q ss_pred             chhhHHHHHhHHHhhh-----cCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCC-------------C
Q 021975          129 PFVSFLYERGWRQNFN-----RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-------------Y  190 (304)
Q Consensus       129 ~~~s~~~~~~w~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-------------~  190 (304)
                      +.+...|+..-++...     .+.|.+|..+.+++.+.+.+.++.+|+|..||+|.++..+.+...             .
T Consensus       120 d~~g~~yE~ll~~~~~~~~k~~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~  199 (425)
T d2okca1         120 DVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRD  199 (425)
T ss_dssp             HHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhccchhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhh
Confidence            3445556655443221     134789999999999999888889999999999999987766421             1


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecchhccCC----------------C-H
Q 021975          191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP----------------S-P  253 (304)
Q Consensus       191 ~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~----------------d-~  253 (304)
                      ..++|+|+++.....|+-++-.++. ......+...|....+ ....||+|+++--+....                + .
T Consensus       200 ~~l~g~E~~~~~~~la~~n~~l~g~-~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~  277 (425)
T d2okca1         200 KALHGVDNTPLVVTLASMNLYLHGI-GTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQ  277 (425)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHHTTC-CSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHH
T ss_pred             hhhhhhhccHHHHHHHHhhhhhcCC-ccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHH
Confidence            2599999999999999988877663 2234567777776543 457899999975442111                0 1


Q ss_pred             HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          254 SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       254 ~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..++..+...|++||++.+..+..
T Consensus       278 ~~Fi~~~~~~Lk~~G~~~iI~p~~  301 (425)
T d2okca1         278 LNFLQHMMLMLKTGGRAAVVLPDN  301 (425)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             HHHHHHHHHhcCCCCeEEEEechH
Confidence            258999999999999999888754

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=2.3e-07  Score=74.25  Aligned_cols=109  Identities=19%  Similarity=0.193  Sum_probs=80.0

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-
Q 021975          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (304)
Q Consensus       155 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (304)
                      .++..++--..++.+|||+||++|.|+..+.+. +....++++|+.+--              ...++.++++|+.+.. 
T Consensus        11 ~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~--------------~i~~~~~~~~d~~~~~~   76 (180)
T d1ej0a_          11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD--------------PIVGVDFLQGDFRDELV   76 (180)
T ss_dssp             HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC--------------CCTTEEEEESCTTSHHH
T ss_pred             HHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc--------------ccCCceEeecccccchh
Confidence            344444333456889999999999999988875 556799999986610              3478999999997632 


Q ss_pred             -------CCCCccceEEecchhccCCCHH-----------HHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 -------FASGFVDAVHAGAALHCWPSPS-----------NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 -------~~~~~fD~V~~~~vl~h~~d~~-----------~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                             .....||+|++.....-..+..           ..+.-+.++||+||.+++=.+..
T Consensus        77 ~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g  139 (180)
T d1ej0a_          77 MKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             hhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence                   2356899999976644433221           45777789999999999998864

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.55  E-value=2.8e-07  Score=76.90  Aligned_cols=103  Identities=17%  Similarity=0.085  Sum_probs=87.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC---CCCccceEE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAVH  242 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~V~  242 (304)
                      ...+|+|||+|.|.-+.-++-..|+.+++.+|.+..-+...+...+..++   .++.++...++.+..   ..+.||+|+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L---~n~~i~~~R~E~~~~~~~~~~~~D~v~  146 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL---ENTTFCHDRAETFGQRKDVRESYDIVT  146 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC---CCcEEEeehhhhccccccccccceEEE
Confidence            46789999999999999999888888999999999999998888888774   688999888765532   135799999


Q ss_pred             ecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +..+    .....+++-....+++||.+++.--
T Consensus       147 sRAv----a~l~~ll~~~~~~l~~~g~~i~~KG  175 (239)
T d1xdza_         147 ARAV----ARLSVLSELCLPLVKKNGLFVALKA  175 (239)
T ss_dssp             EECC----SCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             Ehhh----hCHHHHHHHHhhhcccCCEEEEECC
Confidence            9864    5688899999999999999888763

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=2.1e-07  Score=80.00  Aligned_cols=129  Identities=17%  Similarity=0.197  Sum_probs=95.0

Q ss_pred             HHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-CCC
Q 021975          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FAS  235 (304)
Q Consensus       157 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~  235 (304)
                      +....+...++.+|||+++|.|.=+.+++..+.++.++++|+++.-++..+++++..+.   .++.....|..... ...
T Consensus        93 l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~---~~~~~~~~~~~~~~~~~~  169 (284)
T d1sqga2          93 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM---KATVKQGDGRYPSQWCGE  169 (284)
T ss_dssp             THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC---CCEEEECCTTCTHHHHTT
T ss_pred             ccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc---cceeeeccccccchhccc
Confidence            34445677789999999999999999998887677999999999999999999998872   44444444433221 235


Q ss_pred             CccceEEe------cchhccCCCHH----------------HHHHHHHHhcccCcEEEEEEeCCCCCCccccccc
Q 021975          236 GFVDAVHA------GAALHCWPSPS----------------NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV  288 (304)
Q Consensus       236 ~~fD~V~~------~~vl~h~~d~~----------------~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~~~~~  288 (304)
                      +.||.|+.      .+++..-++..                ++|..+.+.|||||+|+-+|-.-....+..+...
T Consensus       170 ~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~  244 (284)
T d1sqga2         170 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKA  244 (284)
T ss_dssp             CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHH
T ss_pred             ccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHH
Confidence            67999997      34454444332                4788889999999999999987655555544443

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.53  E-value=1.4e-07  Score=80.64  Aligned_cols=111  Identities=15%  Similarity=0.169  Sum_probs=84.4

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CccCCCCeEEEEccCCCC-CCCCCccceEE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRL-PFASGFVDAVH  242 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~  242 (304)
                      ....+||-||.|.|..+..+.+..+..+++.+|+++.+++.|++.+... +....+++.++.+|.... .-.+++||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            3467999999999999999998865679999999999999999987431 111357899999998542 22357899999


Q ss_pred             ecchhccCC----CHHHHHHHHHHhcccCcEEEEEEe
Q 021975          243 AGAALHCWP----SPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       243 ~~~vl~h~~----d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ....-..-.    --.++++.+.+.|+|||+++....
T Consensus       154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~  190 (274)
T d1iy9a_         154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (274)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence            854211100    124789999999999999987653

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.51  E-value=9.1e-08  Score=79.75  Aligned_cols=109  Identities=13%  Similarity=0.100  Sum_probs=73.8

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHH----hCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ..+.+++...++.+|||||++.|..+..++.    .+..++++|+|+++........        ...++.++.+|..+.
T Consensus        70 ~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~--------~~~~I~~i~gDs~~~  141 (232)
T d2bm8a1          70 AVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--------DMENITLHQGDCSDL  141 (232)
T ss_dssp             HHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--------GCTTEEEEECCSSCS
T ss_pred             HHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc--------cccceeeeecccccH
Confidence            3445555555678999999999987665543    3556799999998754332221        347899999998653


Q ss_pred             C----CCCCccceEEecchhccCCCHH-HHHHHHHHhcccCcEEEEEEe
Q 021975          232 P----FASGFVDAVHAGAALHCWPSPS-NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       232 p----~~~~~fD~V~~~~vl~h~~d~~-~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      .    +....+|+|+.-..  |..+.. ..+ ++..+|++||++++-+.
T Consensus       142 ~~~~~l~~~~~dlIfID~~--H~~~~v~~~~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         142 TTFEHLREMAHPLIFIDNA--HANTFNIMKW-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             GGGGGGSSSCSSEEEEESS--CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred             HHHHHHHhcCCCEEEEcCC--cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence            2    33556888877543  333222 223 46689999999999775

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.7e-07  Score=80.48  Aligned_cols=111  Identities=14%  Similarity=0.134  Sum_probs=83.5

Q ss_pred             cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CccCCCCeEEEEccCCCC-CCCCCccceEE
Q 021975          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRL-PFASGFVDAVH  242 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~  242 (304)
                      ...++||-||.|.|..+..+.+..+..+++.+|+++.+++.|++.+... +....++++++.+|+... .-..++||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            3467999999999999999998865679999999999999999987431 111358999999997542 22356899999


Q ss_pred             ecchhccCC-----CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          243 AGAALHCWP-----SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       243 ~~~vl~h~~-----d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      +... +-..     .-.++++.+++.|+|||++++....
T Consensus       157 ~D~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         157 TDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             EECC------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EcCC-CCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            8532 1111     1126799999999999999987654

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.48  E-value=1.8e-07  Score=80.98  Aligned_cols=110  Identities=13%  Similarity=0.119  Sum_probs=81.7

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-ccCCCCeEEEEccCCCC-CCCCCccceEEe
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVHA  243 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (304)
                      ...+||-||.|.|..+..+.+..+..+++.+|+++.+++.+++.+.... ....++++++.+|.... .-..++||+|+.
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~  185 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  185 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence            4679999999999999999998656699999999999999999875422 11357899999998542 123568999998


Q ss_pred             cchhccCC----CHHHHHHHHHHhcccCcEEEEEEe
Q 021975          244 GAALHCWP----SPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       244 ~~vl~h~~----d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ...-..-+    --..+++.+.+.|+|||+++....
T Consensus       186 D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~  221 (312)
T d2b2ca1         186 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE  221 (312)
T ss_dssp             CCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred             cCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence            54311111    113679999999999999998753

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.47  E-value=1.7e-07  Score=80.70  Aligned_cols=111  Identities=18%  Similarity=0.180  Sum_probs=84.0

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-ccCCCCeEEEEccCCCCC--CCCCccceEE
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRLP--FASGFVDAVH  242 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~lp--~~~~~fD~V~  242 (304)
                      ...+||-||.|.|..+..+.+..+..+++++|+++.+++.+++.+.... ....++++++.+|....-  ..+++||+|+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi  159 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  159 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence            4679999999999999999998766799999999999999999764311 113588999999975421  2356899999


Q ss_pred             ecchhccCC----CHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          243 AGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       243 ~~~vl~h~~----d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ....=..-+    --.++++.+++.|+|||++++....
T Consensus       160 ~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         160 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            843211100    1146899999999999999987644

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=9.8e-07  Score=75.25  Aligned_cols=86  Identities=16%  Similarity=0.240  Sum_probs=70.3

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC
Q 021975          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (304)
Q Consensus       153 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (304)
                      ...+.+.+.....++..|||||+|.|.++..|.+.+.  +++++|+++.+++..++.+....  ...++.++.+|+....
T Consensus         8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~--~~~~~~~i~~D~l~~~   83 (278)
T d1zq9a1           8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTP--VASKLQVLVGDVLKTD   83 (278)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTST--TGGGEEEEESCTTTSC
T ss_pred             HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhc--cccchhhhHHHHhhhh
Confidence            4556677777777788999999999999999999986  99999999999999999887654  3468999999998876


Q ss_pred             CCCCccceEEec
Q 021975          233 FASGFVDAVHAG  244 (304)
Q Consensus       233 ~~~~~fD~V~~~  244 (304)
                      ++  .++.|+.+
T Consensus        84 ~~--~~~~vV~N   93 (278)
T d1zq9a1          84 LP--FFDTCVAN   93 (278)
T ss_dssp             CC--CCSEEEEE
T ss_pred             hh--hhhhhhcc
Confidence            54  34566664

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.3e-06  Score=72.61  Aligned_cols=125  Identities=12%  Similarity=0.056  Sum_probs=86.2

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC--
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--  234 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--  234 (304)
                      ....+...++.+|||+++|.|.-+.+++.. +....++++|+++.-++..+++++..+   ..++.+...|...+...  
T Consensus        86 ~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g---~~~~~~~~~d~~~~~~~~~  162 (293)
T d2b9ea1          86 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG---VSCCELAEEDFLAVSPSDP  162 (293)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGSCTTCG
T ss_pred             cccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC---ccceeeeehhhhhhccccc
Confidence            334456678899999999999988888765 445689999999999999999999987   47899999888665422  


Q ss_pred             -CCccceEEec------chhccCCCH-----------H-------HHHHHHHHhcccCcEEEEEEeCCCCCCccccc
Q 021975          235 -SGFVDAVHAG------AALHCWPSP-----------S-------NAVAEISRILRSGGVFVGTTFLRYTSSTSLTG  286 (304)
Q Consensus       235 -~~~fD~V~~~------~vl~h~~d~-----------~-------~~l~~~~r~LkpgG~lvi~~~~~~~~~~~~~~  286 (304)
                       .+.||.|+..      +++...++.           .       .++..+. .|+|||.|+-+|..-....+..+.
T Consensus       163 ~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV  238 (293)
T d2b9ea1         163 RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVV  238 (293)
T ss_dssp             GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHH
T ss_pred             ccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHH
Confidence             2579999973      333222211           1       2333334 479999999888765444444333

>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein Cgl1405/cg1592
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.29  E-value=1.3e-07  Score=60.79  Aligned_cols=47  Identities=15%  Similarity=0.139  Sum_probs=39.4

Q ss_pred             CcCCeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCeeeeecccC
Q 021975           56 LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (304)
Q Consensus        56 ~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (304)
                      -.+++++||.|++++......         +.+.|+.|+..|++.+|++.++.+..
T Consensus         6 ~LL~iL~CP~ck~~L~~~~~~---------~~Lvc~~~~~~YPI~dgIPvLL~deA   52 (59)
T d2jnya1           6 QLLEVLACPKDKGPLRYLESE---------QLLVNERLNLAYRIDDGIPVLLIDEA   52 (59)
T ss_dssp             GGTCCCBCTTTCCBCEEETTT---------TEEEETTTTEEEEEETTEECCCSSCC
T ss_pred             HHHHHhcCCCCCCEeEEeCCC---------CEEEcCccCccccccCCccccCHHHh
Confidence            356889999999999765432         67999999999999999999987643

>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein PFL1779
species: Pseudomonas fluorescens [TaxId: 294]

Probab=98.28  E-value=1.4e-07  Score=60.40  Aligned_cols=45  Identities=20%  Similarity=0.397  Sum_probs=38.6

Q ss_pred             CCeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCeeeeecccC
Q 021975           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (304)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (304)
                      +++++||+|+++|......         +.+.|..|+..|++.+|++.++.+..
T Consensus         4 L~iL~CP~ck~~L~~~~~~---------~~Lvc~~~~laYPI~dGIPvlL~~eA   48 (59)
T d2pk7a1           4 LDILACPICKGPLKLSADK---------TELISKGAGLAYPIRDGIPVMLESEA   48 (59)
T ss_dssp             GGTCCCTTTCCCCEECTTS---------SEEEETTTTEEEEEETTEECCCGGGC
T ss_pred             HhheECCCCCCcceEeCCC---------CEEecCCcCccccccCCccccCHHHh
Confidence            5789999999999775532         67999999999999999999998743

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=7.7e-07  Score=74.91  Aligned_cols=74  Identities=7%  Similarity=0.129  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC
Q 021975          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (304)
Q Consensus       152 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (304)
                      ...++.+.+.+...++..|||||||.|.++..|++.+.  +|+++|+++.+++..++....     ..++.++.+|+...
T Consensus         7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~~~~ii~~D~l~~   79 (252)
T d1qyra_           7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMTF   79 (252)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGGC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhh-----ccchhHHhhhhhhh
Confidence            34556677777777788999999999999999999876  999999999999998874432     36899999999876


Q ss_pred             C
Q 021975          232 P  232 (304)
Q Consensus       232 p  232 (304)
                      .
T Consensus        80 ~   80 (252)
T d1qyra_          80 N   80 (252)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Hypothetical protein CV3345
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.22  E-value=2e-07  Score=59.77  Aligned_cols=46  Identities=17%  Similarity=0.380  Sum_probs=39.0

Q ss_pred             cCCeeeccCCCccccccCCCCccccccccCceeeCCCCccccCCCCeeeeecccC
Q 021975           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISG  111 (304)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~g~~~~~~~~~  111 (304)
                      .+++++||.|++++......         +.+.|..|+..|++.+|++.++.+..
T Consensus         4 LL~iL~CP~ck~~L~~~~~~---------~~Lvc~~~~l~YPI~dGIPvlL~~eA   49 (59)
T d2hf1a1           4 FLEILVCPLCKGPLVFDKSK---------DELICKGDRLAFPIKDGIPMMLESEA   49 (59)
T ss_dssp             CEEECBCTTTCCBCEEETTT---------TEEEETTTTEEEEEETTEECCCGGGC
T ss_pred             HhhhhcCCCCCCeeeEeCCC---------CEEecCCcCccccccCCccccCHHHh
Confidence            46789999999999775432         67999999999999999999998643

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.19  E-value=3.3e-06  Score=75.00  Aligned_cols=105  Identities=15%  Similarity=0.145  Sum_probs=79.9

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc------------CCCCeEEEEccCCCCC-
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------------LTSNLALVRADVCRLP-  232 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~------------~~~~i~~~~~d~~~lp-  232 (304)
                      ++.+|||..||+|..+..++...+...|+..|+|+.+++.++++++.++..            ....+.+.+.|+..+. 
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            467999999999999987776654569999999999999999999887621            0123556666653322 


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      -....||+|...-    +..|..+|+.+.+.++.||.|.++.
T Consensus       125 ~~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         125 ERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             HSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEEe
Confidence            1245799988743    4567889999999999999988865

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=3.8e-06  Score=78.13  Aligned_cols=132  Identities=11%  Similarity=-0.003  Sum_probs=92.7

Q ss_pred             CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhC----C--------------CCeEEEEeCCHHHHHHHH
Q 021975          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG----T--------------YSGVVALDFSENMLRQCY  207 (304)
Q Consensus       146 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~----~--------------~~~v~giD~s~~~~~~a~  207 (304)
                      +.|++|..+.+++.+.+.+.++.+|+|..||+|.++..+.+..    .              ...++|+|+++.+...|+
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            4588999999999999998888899999999999987765531    1              126899999999999999


Q ss_pred             HHHHhcCccC--CCCeEEEEccCCCCC-CCCCccceEEecchhcc--C-----------CC-HHHHHHHHHHhcccCcEE
Q 021975          208 DFIKQDNTIL--TSNLALVRADVCRLP-FASGFVDAVHAGAALHC--W-----------PS-PSNAVAEISRILRSGGVF  270 (304)
Q Consensus       208 ~~~~~~~~~~--~~~i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h--~-----------~d-~~~~l~~~~r~LkpgG~l  270 (304)
                      -++-.++...  .....+...+....+ .....||+|+++--+.-  .           .+ ...++..+.+.||+||++
T Consensus       224 ~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~  303 (524)
T d2ar0a1         224 MNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA  303 (524)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcE
Confidence            8887665110  011123334433211 23457999999643311  0           11 125899999999999999


Q ss_pred             EEEEeCC
Q 021975          271 VGTTFLR  277 (304)
Q Consensus       271 vi~~~~~  277 (304)
                      .+..+..
T Consensus       304 aiIlP~~  310 (524)
T d2ar0a1         304 AVVVPDN  310 (524)
T ss_dssp             EEEEEHH
T ss_pred             EEEEehH
Confidence            9988755

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.94  E-value=0.00011  Score=60.56  Aligned_cols=109  Identities=17%  Similarity=0.147  Sum_probs=68.0

Q ss_pred             cccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc-cCCCCCCCCCccceE
Q 021975          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDAV  241 (304)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~V  241 (304)
                      ...+..+|+|+|||.|.++..++.......+.|+++--...+ .-...+..+   ..-+.+... |+..+  +....|+|
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-~P~~~~~~~---~ni~~~~~~~dv~~l--~~~~~D~v  136 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-EPIPMSTYG---WNLVRLQSGVDVFFI--PPERCDTL  136 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCSTT---GGGEEEECSCCTTTS--CCCCCSEE
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-CCccccccc---cccccchhhhhHHhc--CCCcCCEE
Confidence            445677999999999999999998765457888887321100 000000000   011233322 23333  36789999


Q ss_pred             EecchhccCCCHH-------HHHHHHHHhcccCcEEEEEEeCCC
Q 021975          242 HAGAALHCWPSPS-------NAVAEISRILRSGGVFVGTTFLRY  278 (304)
Q Consensus       242 ~~~~vl~h~~d~~-------~~l~~~~r~LkpgG~lvi~~~~~~  278 (304)
                      +|..+ ++.+++.       .+|+-+.+.|+|||-|++-.+..+
T Consensus       137 lcDm~-ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py  179 (257)
T d2p41a1         137 LCDIG-ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY  179 (257)
T ss_dssp             EECCC-CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred             EeeCC-CCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC
Confidence            99865 3455443       467777899999999998877654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.37  E-value=0.0014  Score=50.53  Aligned_cols=101  Identities=17%  Similarity=0.099  Sum_probs=67.9

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--------
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------  232 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------  232 (304)
                      ....++.+||-+|||. |.+...+++.. +.+|+++|.++.-++.+++.        .....+.........        
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~--------ga~~~~~~~~~~~~~~~~~~~~~   92 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC--------GADVTLVVDPAKEEESSIIERIR   92 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT--------TCSEEEECCTTTSCHHHHHHHHH
T ss_pred             hCCCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHc--------CCcEEEeccccccccchhhhhhh
Confidence            3456788999999994 77777777764 45999999999999999883        233333322211110        


Q ss_pred             -CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                       ...+.+|+|+-.-     .. ...+....+.|+++|++++.....
T Consensus        93 ~~~g~g~D~vid~~-----g~-~~~~~~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2          93 SAIGDLPNVTIDCS-----GN-EKCITIGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             HHSSSCCSEEEECS-----CC-HHHHHHHHHHSCTTCEEEECSCCS
T ss_pred             cccccCCceeeecC-----CC-hHHHHHHHHHHhcCCceEEEecCC
Confidence             0124578887642     22 356888999999999999877544

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.0011  Score=57.13  Aligned_cols=73  Identities=12%  Similarity=0.095  Sum_probs=55.6

Q ss_pred             HHHHHHHHHhhcc------cCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEE
Q 021975          152 DEEFKMAQEYFKS------AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR  225 (304)
Q Consensus       152 ~~~~~~l~~~l~~------~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~  225 (304)
                      ....+.+.+.+..      .++.+|||||.|.|.++..|.+.+...+++++|+++...+..++.+.      ..++.++.
T Consensus        23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~------~~~~~ii~   96 (322)
T d1i4wa_          23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------GSPLQILK   96 (322)
T ss_dssp             HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------TSSCEEEC
T ss_pred             HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc------CCCcEEEe
Confidence            3445555555432      24668999999999999999987433489999999999999988653      25689999


Q ss_pred             ccCCC
Q 021975          226 ADVCR  230 (304)
Q Consensus       226 ~d~~~  230 (304)
                      +|+..
T Consensus        97 ~D~l~  101 (322)
T d1i4wa_          97 RDPYD  101 (322)
T ss_dssp             SCTTC
T ss_pred             Cchhh
Confidence            99864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.09  E-value=0.0025  Score=50.63  Aligned_cols=105  Identities=13%  Similarity=0.133  Sum_probs=69.6

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC-CCC------C
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RLP------F  233 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~lp------~  233 (304)
                      ....++.+||.+|||. |.....+++......|+++|.++..++.|++.          ....+.-... ++.      .
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----------Ga~~~~~~~~~~~~~~i~~~t   90 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----------GFEIADLSLDTPLHEQIAALL   90 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCEEEETTSSSCHHHHHHHHH
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----------cccEEEeCCCcCHHHHHHHHh
Confidence            4456789999999998 66667777664456999999999999999872          2232221111 110      1


Q ss_pred             CCCccceEEecchhc------c---CCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          234 ASGFVDAVHAGAALH------C---WPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~------h---~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      ....+|+++-.-..+      +   .......++.+.+.++|||++++.-..
T Consensus        91 ~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~  142 (195)
T d1kola2          91 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  142 (195)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence            234689888542211      0   112346899999999999999887643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.05  E-value=0.00024  Score=55.31  Aligned_cols=102  Identities=11%  Similarity=0.031  Sum_probs=65.4

Q ss_pred             hcccCCCeEEEEcCC-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEE-ccCCCC-CCCCCcc
Q 021975          162 FKSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRL-PFASGFV  238 (304)
Q Consensus       162 l~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~l-p~~~~~f  238 (304)
                      ....++.+||-+|+| .|.+...+++.. +.+++++|.+++.++.+++.-        .. .++. .+-.+. .-..+.|
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lG--------a~-~~i~~~~~~~~~~~~~~~~   92 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMG--------AD-HYIATLEEGDWGEKYFDTF   92 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHT--------CS-EEEEGGGTSCHHHHSCSCE
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccC--------Cc-EEeeccchHHHHHhhhccc
Confidence            345678999999998 477777777663 349999999999999888731        12 2222 111111 1124579


Q ss_pred             ceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      |+|+..-.-.+-    ..+....+.|+++|++++.....
T Consensus        93 d~vi~~~~~~~~----~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1piwa2          93 DLIVVCASSLTD----IDFNIMPKAMKVGGRIVSISIPE  127 (168)
T ss_dssp             EEEEECCSCSTT----CCTTTGGGGEEEEEEEEECCCCC
T ss_pred             ceEEEEecCCcc----chHHHHHHHhhccceEEEecccc
Confidence            988764322211    12456788999999998876443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.93  E-value=0.0034  Score=48.68  Aligned_cols=102  Identities=17%  Similarity=0.091  Sum_probs=67.6

Q ss_pred             HHhhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----
Q 021975          159 QEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (304)
Q Consensus       159 ~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----  232 (304)
                      .+..+..++.+||=+|||. |.....+++......++.+|.++.-++.+++.-        . ..++..+-.+..     
T Consensus        21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~G--------a-~~~i~~~~~~~~~~i~~   91 (174)
T d1f8fa2          21 INALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG--------A-THVINSKTQDPVAAIKE   91 (174)
T ss_dssp             HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT--------C-SEEEETTTSCHHHHHHH
T ss_pred             HHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcC--------C-eEEEeCCCcCHHHHHHH
Confidence            3445567789999999986 455666665532457889999999999888731        1 233433322211     


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +.++.||+|+-.-     .. ...++...++++|+|++++...
T Consensus        92 ~t~gg~D~vid~~-----G~-~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          92 ITDGGVNFALEST-----GS-PEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             HTTSCEEEEEECS-----CC-HHHHHHHHHTEEEEEEEEECCC
T ss_pred             HcCCCCcEEEEcC-----Cc-HHHHHHHHhcccCceEEEEEee
Confidence            2245789887532     22 3568899999999999988654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.0021  Score=50.24  Aligned_cols=103  Identities=23%  Similarity=0.241  Sum_probs=67.0

Q ss_pred             HhhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------
Q 021975          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (304)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (304)
                      +.....++.+||-+|+|. |.+...+++.....+|+++|.++..++.+++.        ... .++...-.+..      
T Consensus        22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l--------Ga~-~vi~~~~~~~~~~~~~i   92 (182)
T d1vj0a2          22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI--------GAD-LTLNRRETSVEERRKAI   92 (182)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT--------TCS-EEEETTTSCHHHHHHHH
T ss_pred             HHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc--------cce-EEEeccccchHHHHHHH
Confidence            333455788999999985 77777888774224899999999999998772        122 22221111110      


Q ss_pred             ---CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 ---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                         .....+|+|+-.-     .. ...++...+.|++||++++.....
T Consensus        93 ~~~~~~~g~Dvvid~v-----G~-~~~~~~a~~~l~~~G~iv~~G~~~  134 (182)
T d1vj0a2          93 MDITHGRGADFILEAT-----GD-SRALLEGSELLRRGGFYSVAGVAV  134 (182)
T ss_dssp             HHHTTTSCEEEEEECS-----SC-TTHHHHHHHHEEEEEEEEECCCCS
T ss_pred             HHhhCCCCceEEeecC-----Cc-hhHHHHHHHHhcCCCEEEEEeecC
Confidence               1133589887532     22 235788899999999998776443

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0045  Score=47.73  Aligned_cols=101  Identities=16%  Similarity=0.114  Sum_probs=66.6

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--------
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------  232 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------  232 (304)
                      ....++.+||=+|+|. |.+...+++.....+|+++|.++.-++.|++.        .... ++..+-.+..        
T Consensus        22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~--------Ga~~-~~~~~~~~~~~~~~~~~~   92 (171)
T d1pl8a2          22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI--------GADL-VLQISKESPQEIARKVEG   92 (171)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT--------TCSE-EEECSSCCHHHHHHHHHH
T ss_pred             hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh--------CCcc-cccccccccccccccccc
Confidence            3456788999999987 55566666664334899999999999998872        1222 2222212110        


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      -....+|+|+..-     .. ...++...+.+++||++++.....
T Consensus        93 ~~g~g~Dvvid~~-----G~-~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2          93 QLGCKPEVTIECT-----GA-EASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             HHTSCCSEEEECS-----CC-HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             cCCCCceEEEecc-----CC-chhHHHHHHHhcCCCEEEEEecCC
Confidence            0124578877642     22 346889999999999999877654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.81  E-value=0.0031  Score=49.01  Aligned_cols=101  Identities=13%  Similarity=0.174  Sum_probs=68.0

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------CC
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA  234 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~  234 (304)
                      ....++.+||=+|||. |.....+++.....+|+++|.++.-++.+++.-        . ..++...-.+..      ..
T Consensus        23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lG--------a-~~~i~~~~~~~~~~v~~~t~   93 (174)
T d1jqba2          23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYG--------A-TDILNYKNGHIEDQVMKLTN   93 (174)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHT--------C-SEEECGGGSCHHHHHHHHTT
T ss_pred             hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhC--------c-cccccccchhHHHHHHHHhh
Confidence            4556788999999997 888888888743347999999999999988731        1 122222111110      11


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ...+|+|+-.-.     . ...+++..+.++|+|++++.-...
T Consensus        94 g~G~D~vid~~g-----~-~~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2          94 GKGVDRVIMAGG-----G-SETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             TSCEEEEEECSS-----C-TTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             ccCcceEEEccC-----C-HHHHHHHHHHHhcCCEEEEEeecC
Confidence            345898876432     2 245788899999999999876544

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.66  E-value=0.0023  Score=52.78  Aligned_cols=81  Identities=19%  Similarity=0.071  Sum_probs=59.9

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcc------CCCCeEEEEccCCC-CCCCCCccc
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------LTSNLALVRADVCR-LPFASGFVD  239 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~------~~~~i~~~~~d~~~-lp~~~~~fD  239 (304)
                      ..+|||.-||.|..+..++..|.  +|+++|-++......++.++.....      ...+++++.+|..+ +.-....||
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G~--~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D  166 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred             CCEEEECCCcccHHHHHHHhCCC--EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence            34899999999999999999986  9999999998777666655432200      02378999999744 222256799


Q ss_pred             eEEecchhcc
Q 021975          240 AVHAGAALHC  249 (304)
Q Consensus       240 ~V~~~~vl~h  249 (304)
                      +|+..-.+.+
T Consensus       167 vIYlDPMFp~  176 (250)
T d2oyra1         167 VVYLDPMFPH  176 (250)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEECCCCcc
Confidence            9998666544

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.43  E-value=0.0087  Score=45.71  Aligned_cols=97  Identities=16%  Similarity=0.168  Sum_probs=62.7

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CCC
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FAS  235 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~  235 (304)
                      ....++.+||=+|+|. |.....+++.. +.+|+++|.++..++.+++.        ... .++...-.+..     ...
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~--------Ga~-~~i~~~~~~~~~~~~~~~~   92 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKL--------GAS-LTVNARQEDPVEAIQRDIG   92 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT--------TCS-EEEETTTSCHHHHHHHHHS
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhcc--------Ccc-ccccccchhHHHHHHHhhc
Confidence            4456788999999986 66777777764 35999999999999888772        121 23322222210     112


Q ss_pred             CccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +.+|+|.+..      . ...++...+.|++||++++...
T Consensus        93 g~~~~i~~~~------~-~~~~~~~~~~l~~~G~iv~~G~  125 (166)
T d1llua2          93 GAHGVLVTAV------S-NSAFGQAIGMARRGGTIALVGL  125 (166)
T ss_dssp             SEEEEEECCS------C-HHHHHHHHTTEEEEEEEEECCC
T ss_pred             CCcccccccc------c-chHHHHHHHHhcCCcEEEEEEe
Confidence            2334444332      2 3468889999999999988654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.011  Score=45.42  Aligned_cols=97  Identities=11%  Similarity=0.056  Sum_probs=64.6

Q ss_pred             hhcccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------
Q 021975          161 YFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (304)
Q Consensus       161 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (304)
                      ..+..++.+||-.|+  |.|.....+++.. +.++++++-+++..+.+++.    +    .. .++...-.++.      
T Consensus        23 ~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~----G----a~-~vi~~~~~~~~~~i~~~   92 (174)
T d1yb5a2          23 SACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN----G----AH-EVFNHREVNYIDKIKKY   92 (174)
T ss_dssp             TSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----CS-EEEETTSTTHHHHHHHH
T ss_pred             HhCCCCCCEEEEEecccccccccccccccc-Cccccccccccccccccccc----C----cc-cccccccccHHHHhhhh
Confidence            344567889999997  3577777777764 35999999898888877762    2    11 22221111110      


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      .....+|+|+..-.       ...+++..+.|+|+|+++..-
T Consensus        93 t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2          93 VGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             HCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             hccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEEe
Confidence            12456999887532       346888999999999998864

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.35  E-value=0.0075  Score=52.28  Aligned_cols=111  Identities=14%  Similarity=0.130  Sum_probs=71.4

Q ss_pred             CeEEEEcCCccHHHHH--------HHHh--------CCCCeEEEEeCCHHHHHHHHHHHHhcCccCCC--CeEEEEccCC
Q 021975          168 GLLVDVSCGSGLFSRK--------FAKS--------GTYSGVVALDFSENMLRQCYDFIKQDNTILTS--NLALVRADVC  229 (304)
Q Consensus       168 ~~vLDiGcG~G~~~~~--------l~~~--------~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~--~i~~~~~d~~  229 (304)
                      -+|.|+||.+|..+..        +.+.        -+.-+|+--|.-.+--...-+.+....- ...  -+..+.+.+.
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~-~~~~~f~~gvpGSFY  131 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND-VDGVCFINGVPGSFY  131 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS-CTTCEEEEEEESCSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhcccccc-CCCCeEEEecCCchh
Confidence            5699999999987632        2211        2345677777644333322222222110 001  2344567776


Q ss_pred             CCCCCCCccceEEecchhccCCC---------------------------------HHHHHHHHHHhcccCcEEEEEEeC
Q 021975          230 RLPFASGFVDAVHAGAALHCWPS---------------------------------PSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d---------------------------------~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .--||+++.|++++...||++..                                 ...+|+.=.+-|+|||+++++..+
T Consensus       132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g  211 (359)
T d1m6ex_         132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG  211 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred             hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence            65688999999999999999752                                 113677778899999999999988


Q ss_pred             CCC
Q 021975          277 RYT  279 (304)
Q Consensus       277 ~~~  279 (304)
                      +..
T Consensus       212 r~~  214 (359)
T d1m6ex_         212 RRS  214 (359)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            753

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.34  E-value=0.0064  Score=49.59  Aligned_cols=60  Identities=18%  Similarity=0.240  Sum_probs=50.5

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK  211 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~  211 (304)
                      +.+.++.+.+.+... .++..|||.=||+|..+.+..+.+-  +.+|+|+++..++.|++++.
T Consensus       196 ~kP~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R--~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         196 PKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHc
Confidence            345666766666664 4688999999999999999998887  99999999999999999874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.33  E-value=0.013  Score=45.42  Aligned_cols=101  Identities=16%  Similarity=0.104  Sum_probs=68.3

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-------C
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------F  233 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------~  233 (304)
                      ....++.+||=+|||. |.+...+++......|+.+|.++.-++.+++.        .. ..++...-.+..       .
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~--------Ga-~~~i~~~~~~~~~~~~~~~~   94 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL--------GA-TDCLNPRELDKPVQDVITEL   94 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT--------TC-SEEECGGGCSSCHHHHHHHH
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh--------CC-CcccCCccchhhhhhhHhhh
Confidence            4456788999999998 88888888875445899999999988888872        11 122221111111       1


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEeCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFLR  277 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~~~  277 (304)
                      ..+.+|+|+-.-     .. ...+++..+.+++| |++++.-...
T Consensus        95 ~~~G~d~vie~~-----G~-~~~~~~a~~~~~~g~G~~v~vG~~~  133 (174)
T d1e3ia2          95 TAGGVDYSLDCA-----GT-AQTLKAAVDCTVLGWGSCTVVGAKV  133 (174)
T ss_dssp             HTSCBSEEEESS-----CC-HHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred             hcCCCcEEEEec-----cc-chHHHHHHHHhhcCCeEEEecCCCC
Confidence            135688887542     23 34689999999996 9998876543

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.07  E-value=0.0057  Score=51.54  Aligned_cols=61  Identities=10%  Similarity=0.058  Sum_probs=51.2

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh
Q 021975          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (304)
Q Consensus       149 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  212 (304)
                      +.+..+.+.+...... ++..|||.=||+|..+.+..+.+-  +.+|+|++++.++.|++++..
T Consensus       234 ~kP~~L~~rlI~~~s~-~gdiVlDpF~GSGTT~~AA~~lgR--~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         234 RFPAKLPEFFIRMLTE-PDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CCCTHHHHHHHHHHCC-TTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSC
T ss_pred             cCchHHHHHhhhhccc-CCCEEEecCCCCcHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHHHh
Confidence            4456777777766544 688999999999999999999887  999999999999999987654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0087  Score=45.88  Aligned_cols=98  Identities=16%  Similarity=0.169  Sum_probs=64.3

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCC-CCCCCCccc
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVD  239 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD  239 (304)
                      .+..++.+||=+|+|. |.+...+++.. +.+++++|.+++-.+.+++.-        .. .++...-.. .....+.+|
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lG--------ad-~~i~~~~~~~~~~~~~~~D   95 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALG--------AD-EVVNSRNADEMAAHLKSFD   95 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHT--------CS-EEEETTCHHHHHTTTTCEE
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccC--------Cc-EEEECchhhHHHHhcCCCc
Confidence            4556788999999985 77777777764 458899999998888777631        11 222221111 111235699


Q ss_pred             eEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEe
Q 021975          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      +++..-.-.      ..+....+.|+++|++++...
T Consensus        96 ~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          96 FILNTVAAP------HNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             EEEECCSSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred             eeeeeeecc------hhHHHHHHHHhcCCEEEEecc
Confidence            887643211      236778899999999998754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.83  E-value=0.042  Score=42.22  Aligned_cols=103  Identities=14%  Similarity=0.081  Sum_probs=62.3

Q ss_pred             hhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-------
Q 021975          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------  232 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------  232 (304)
                      .....++.+||-+|||. |.....+++.....+|+++|.++.-++.+++.        .. ..++...-.+..       
T Consensus        22 ~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l--------Ga-~~~i~~~~~d~~~~~~~~~   92 (174)
T d1p0fa2          22 TAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL--------GA-TECLNPKDYDKPIYEVICE   92 (174)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT--------TC-SEEECGGGCSSCHHHHHHH
T ss_pred             hhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc--------CC-cEEEcCCCchhHHHHHHHH
Confidence            34566789999999997 44555555553245899999999999999872        11 122221111111       


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcc-cCcEEEEEEeCCC
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILR-SGGVFVGTTFLRY  278 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lk-pgG~lvi~~~~~~  278 (304)
                      ...+.+|+|+-.-     ..+ ..+.+....++ ++|.+++.-....
T Consensus        93 ~~~~G~d~vid~~-----g~~-~~~~~~~~~~~~~~G~~v~vG~~~~  133 (174)
T d1p0fa2          93 KTNGGVDYAVECA-----GRI-ETMMNALQSTYCGSGVTVVLGLASP  133 (174)
T ss_dssp             HTTSCBSEEEECS-----CCH-HHHHHHHHTBCTTTCEEEECCCCCT
T ss_pred             hcCCCCcEEEEcC-----CCc-hHHHHHHHHHHHhcCceEEEEEecC
Confidence            1134578877642     233 34556666555 5698888765443

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.82  E-value=0.0085  Score=45.94  Aligned_cols=101  Identities=17%  Similarity=0.152  Sum_probs=66.3

Q ss_pred             hcccCCCeEEEEcC-C-ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------C
Q 021975          162 FKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------F  233 (304)
Q Consensus       162 l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~  233 (304)
                      ....++.+||=+|+ | .|..+..+++.....+|+++|.++.-++.+++.-        .. .++..+-.+..      .
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~G--------a~-~~i~~~~~~~~~~~~~~~   93 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAG--------AD-YVINASMQDPLAEIRRIT   93 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHT--------CS-EEEETTTSCHHHHHHHHT
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcC--------Cc-eeeccCCcCHHHHHHHHh
Confidence            45567889999997 3 4566666665533469999999999988888731        11 23333322210      1


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..+.||+|+....      -...++...+.++|||++++.-...
T Consensus        94 ~~~~~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G~~~  131 (170)
T d1jvba2          94 ESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGLFG  131 (170)
T ss_dssp             TTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECCSSC
T ss_pred             hcccchhhhcccc------cchHHHhhhhhcccCCEEEEecccc
Confidence            1356998887432      2445788899999999998875443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.81  E-value=0.022  Score=44.04  Aligned_cols=104  Identities=13%  Similarity=0.060  Sum_probs=62.6

Q ss_pred             hhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------C
Q 021975          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------F  233 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~  233 (304)
                      ..+..++.+||=+|||. |.+...+++.....+|+++|.+++-++.|++.-        ....+-..+.....      .
T Consensus        24 ~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G--------A~~~in~~~~~~~~~~~~~~~   95 (176)
T d1d1ta2          24 TGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG--------ATECISPKDSTKPISEVLSEM   95 (176)
T ss_dssp             TSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT--------CSEEECGGGCSSCHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC--------CcEEECccccchHHHHHHHHh
Confidence            34456788999999997 445555665543469999999999999999842        22222111211110      1


Q ss_pred             CCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ....+|+++-.-     ..+..+...+..+++.+|++++.-...
T Consensus        96 ~g~G~d~vi~~~-----g~~~~~~~a~~~~~~~~G~~v~vG~~~  134 (176)
T d1d1ta2          96 TGNNVGYTFEVI-----GHLETMIDALASCHMNYGTSVVVGVPP  134 (176)
T ss_dssp             HTSCCCEEEECS-----CCHHHHHHHHTTSCTTTCEEEECSCCC
T ss_pred             ccccceEEEEeC-----CchHHHHHHHHHhhcCCeEEEEEEccc
Confidence            234688776643     234444444444556669988876544

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.80  E-value=0.018  Score=44.16  Aligned_cols=99  Identities=19%  Similarity=0.105  Sum_probs=64.5

Q ss_pred             ccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CCCCc
Q 021975          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASGF  237 (304)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~~  237 (304)
                      ..++.+||-+|+|. |.....+++......++++|.+++-++.+++..         ...++..+-....     .....
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~g---------a~~~i~~~~~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLG---------ADHVVDARRDPVKQVMELTRGRG  100 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTT---------CSEEEETTSCHHHHHHHHTTTCC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcc---------cceeecCcccHHHHHHHhhCCCC
Confidence            35688999999987 455566665522458999999999888888731         1233332211110     12345


Q ss_pred             cceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +|+|+..-     .. ...++...+.|++||++++.....
T Consensus       101 ~d~vid~~-----g~-~~~~~~a~~~l~~~G~iv~~G~~~  134 (172)
T d1h2ba2         101 VNVAMDFV-----GS-QATVDYTPYLLGRMGRLIIVGYGG  134 (172)
T ss_dssp             EEEEEESS-----CC-HHHHHHGGGGEEEEEEEEECCCSS
T ss_pred             ceEEEEec-----Cc-chHHHHHHHHHhCCCEEEEEeCcc
Confidence            88887643     22 335888999999999999876543

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.77  E-value=0.0028  Score=35.64  Aligned_cols=31  Identities=23%  Similarity=0.569  Sum_probs=24.5

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccccCC
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  100 (304)
                      +-.||.|++.....+.          ..+.|+.|+|.+...
T Consensus         3 lP~CP~C~seytYedg----------~l~vCPeC~hEW~~~   33 (38)
T d2akla2           3 LPPCPQCNSEYTYEDG----------ALLVCPECAHEWSPN   33 (38)
T ss_dssp             SCCCTTTCCCCCEECS----------SSEEETTTTEEECTT
T ss_pred             CCcCCCCCCcceEcCC----------CEEECCcccCcCCcc
Confidence            3469999999877553          689999999987543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.73  E-value=0.029  Score=42.50  Aligned_cols=98  Identities=21%  Similarity=0.208  Sum_probs=61.6

Q ss_pred             hcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------CC
Q 021975          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA  234 (304)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~  234 (304)
                      ....++.+||=.|+|. |.....+++.. ..+|+++|.+++-++.+++.          ....+........      ..
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~~----------Ga~~~~~~~~~~~~~~~~~~~   91 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKEL----------GADLVVNPLKEDAAKFMKEKV   91 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----------TCSEEECTTTSCHHHHHHHHH
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhhc----------Ccceecccccchhhhhccccc
Confidence            3456788999999987 44555555553 34999999999999888772          1222222221111      11


Q ss_pred             CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      .+.+|+|+...      . ...+....+.|+|||++++.....
T Consensus        92 ~~~~~~v~~~~------~-~~~~~~a~~~l~~~G~i~~~g~~~  127 (168)
T d1rjwa2          92 GGVHAAVVTAV------S-KPAFQSAYNSIRRGGACVLVGLPP  127 (168)
T ss_dssp             SSEEEEEESSC------C-HHHHHHHHHHEEEEEEEEECCCCS
T ss_pred             CCCceEEeecC------C-HHHHHHHHHHhccCCceEeccccc
Confidence            23344443321      2 456899999999999999875433

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.62  E-value=0.016  Score=47.73  Aligned_cols=61  Identities=15%  Similarity=0.166  Sum_probs=51.2

Q ss_pred             CcHHHHHHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 021975          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD  213 (304)
Q Consensus       150 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  213 (304)
                      .+.++.+.+..... .++..|||.=||+|..+.+..+.+-  +++|+|+++...+.|++++...
T Consensus       192 kP~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR--~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         192 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC
T ss_pred             cchhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence            45666666666554 4688999999999999999999887  9999999999999999998753

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.31  E-value=0.048  Score=41.42  Aligned_cols=90  Identities=14%  Similarity=0.215  Sum_probs=58.6

Q ss_pred             eEEEEcCCc-c-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975          169 LLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (304)
Q Consensus       169 ~vLDiGcG~-G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (304)
                      +|+=||||. | .++..|.+.++..+|+|+|.+++.++.+++.         ..+.....+....  .+...|+|+..--
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~---------~~~~~~~~~~~~~--~~~~~dlIila~p   71 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL---------GIIDEGTTSIAKV--EDFSPDFVMLSSP   71 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT---------TSCSEEESCGGGG--GGTCCSEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh---------hcchhhhhhhhhh--hccccccccccCC
Confidence            578899996 4 4566777778777999999999999998873         1122222222222  2345788887532


Q ss_pred             hccCCCHHHHHHHHHHhcccCcEEEE
Q 021975          247 LHCWPSPSNAVAEISRILRSGGVFVG  272 (304)
Q Consensus       247 l~h~~d~~~~l~~~~r~LkpgG~lvi  272 (304)
                      ..   .-..++.++...++++.+++-
T Consensus        72 ~~---~~~~vl~~l~~~~~~~~ii~d   94 (171)
T d2g5ca2          72 VR---TFREIAKKLSYILSEDATVTD   94 (171)
T ss_dssp             HH---HHHHHHHHHHHHSCTTCEEEE
T ss_pred             ch---hhhhhhhhhhccccccccccc
Confidence            11   234578888888888765543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.53  E-value=0.14  Score=38.87  Aligned_cols=104  Identities=13%  Similarity=0.041  Sum_probs=63.4

Q ss_pred             HhhcccCCCeEEEEcCCccH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------
Q 021975          160 EYFKSAQGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (304)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (304)
                      +..+..++.+||=+|+|.+. ....+++.....+|+++|.+++-.+.+++.-        ....+...+..+..      
T Consensus        22 ~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G--------a~~~i~~~~~~~~~~~~~~~   93 (176)
T d2jhfa2          22 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG--------ATECVNPQDYKKPIQEVLTE   93 (176)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT--------CSEEECGGGCSSCHHHHHHH
T ss_pred             HhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC--------CeeEEecCCchhHHHHHHHH
Confidence            34456678999999997643 4455555544569999999999998888731        12222112222210      


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEeCC
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFLR  277 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~~~  277 (304)
                      ...+.+|+|+-.-.     . ...++.....++++ |.+++.....
T Consensus        94 ~~~~G~D~vid~~G-----~-~~~~~~a~~~~~~~~g~~~~~~~~~  133 (176)
T d2jhfa2          94 MSNGGVDFSFEVIG-----R-LDTMVTALSCCQEAYGVSVIVGVPP  133 (176)
T ss_dssp             HTTSCBSEEEECSC-----C-HHHHHHHHHHBCTTTCEEEECSCCC
T ss_pred             HhcCCCCEEEecCC-----c-hhHHHHHHHHHhcCCcceEEecCCC
Confidence            12356898887542     2 34467777788886 5656555444

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.31  E-value=0.11  Score=39.74  Aligned_cols=98  Identities=18%  Similarity=0.093  Sum_probs=63.4

Q ss_pred             HhhcccCCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----
Q 021975          160 EYFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (304)
Q Consensus       160 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----  232 (304)
                      +.....++.+||=.|.  |.|.++..+++.. +.++++++-+++..+.+++    .+    .. .++...-.++.     
T Consensus        19 ~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~----~G----a~-~vi~~~~~~~~~~v~~   88 (183)
T d1pqwa_          19 EVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSR----LG----VE-YVGDSRSVDFADEILE   88 (183)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHT----TC----CS-EEEETTCSTHHHHHHH
T ss_pred             HHhCCCCCCEEEEECCCCCcccccchhhccc-cccceeeeccccccccccc----cc----cc-ccccCCccCHHHHHHH
Confidence            3344567889998774  3467777777763 3499999888877777765    22    22 22222212211     


Q ss_pred             -CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                       .....||+|+..-.       ...++++.+.|+++|+++...
T Consensus        89 ~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~G  124 (183)
T d1pqwa_          89 LTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELG  124 (183)
T ss_dssp             HTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred             HhCCCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEEc
Confidence             12457999997542       235788899999999988864

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.18  E-value=0.16  Score=38.91  Aligned_cols=100  Identities=11%  Similarity=-0.004  Sum_probs=66.5

Q ss_pred             HHHhhcccCCCeEEEEcCCc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---
Q 021975          158 AQEYFKSAQGGLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---  232 (304)
                      +.+..+..++.+||-.|++.  |.....+++.. +.+|++++-+++..+.+++.        ..... +..+-++..   
T Consensus        21 l~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~--------Ga~~v-i~~~~~~~~~~~   90 (182)
T d1v3va2          21 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI--------GFDAA-FNYKTVNSLEEA   90 (182)
T ss_dssp             HHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT--------TCSEE-EETTSCSCHHHH
T ss_pred             HHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhh--------hhhhh-cccccccHHHHH
Confidence            44455566788999888865  56777777774 35999999999888777762        12222 222222210   


Q ss_pred             ---CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          233 ---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       233 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                         .....+|+|+-.-     .  ...+++..+.|+++|.++..-
T Consensus        91 ~~~~~~~Gvd~v~D~v-----G--~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          91 LKKASPDGYDCYFDNV-----G--GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             HHHHCTTCEEEEEESS-----C--HHHHHHHGGGEEEEEEEEECC
T ss_pred             HHHhhcCCCceeEEec-----C--chhhhhhhhhccCCCeEEeec
Confidence               1234688887642     2  346899999999999998764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.17  E-value=0.011  Score=45.47  Aligned_cols=98  Identities=18%  Similarity=0.185  Sum_probs=67.9

Q ss_pred             CCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEec
Q 021975          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (304)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (304)
                      ++.+|+-||+|. |......+... .++|+.+|.+++.+++.+..+..       ++.+...+-+.+.-.-...|+|+..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~-------~~~~~~~~~~~l~~~~~~aDivI~a  102 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS-------RVELLYSNSAEIETAVAEADLLIGA  102 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG-------GSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcc-------cceeehhhhhhHHHhhccCcEEEEe
Confidence            578999999997 66666655553 45999999999999988876543       3455444432222112357999987


Q ss_pred             chhccCCCHHHHHHHHHHhcccCcEEE
Q 021975          245 AALHCWPSPSNAVAEISRILRSGGVFV  271 (304)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~lv  271 (304)
                      -.+.--.-|.-+-+++.+.+|||.+++
T Consensus       103 alipG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         103 VLVPGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             eecCCcccCeeecHHHHhhcCCCcEEE
Confidence            655444455556688999999998765

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.16  E-value=0.12  Score=39.20  Aligned_cols=100  Identities=14%  Similarity=0.119  Sum_probs=63.2

Q ss_pred             HhhcccCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------
Q 021975          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (304)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (304)
                      +.....++.+||=+|||. |.+...+++......|+++|.++.-.+.+++.-        .. .++...-....      
T Consensus        22 ~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lG--------a~-~~i~~~~~~~~~~~~~~   92 (176)
T d2fzwa2          22 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFG--------AT-ECINPQDFSKPIQEVLI   92 (176)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHT--------CS-EEECGGGCSSCHHHHHH
T ss_pred             HhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhC--------Cc-EEEeCCchhhHHHHHHH
Confidence            344566789999999984 445555666532458999999999888888731        11 22221111111      


Q ss_pred             -CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                       ...+.+|+|+..-.      ...+++....++++||.+++..
T Consensus        93 ~~~~~g~D~vid~~G------~~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          93 EMTDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             HHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHcCCCCcEeeecCC------CHHHHHHHHHhhcCCceeEEEE
Confidence             11346898887532      2356888999999998776554

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=94.10  E-value=0.12  Score=44.46  Aligned_cols=79  Identities=11%  Similarity=0.113  Sum_probs=49.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCC
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKSG-------TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~-------~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (304)
                      ..+...|+|+|+|+|.++..+.+..       ...+++-+|.|+...+.-++.++..     .++.++. ++..+|  + 
T Consensus        77 ~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~-----~~i~w~~-~~~~~~--~-  147 (365)
T d1zkda1          77 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-----RNIHWHD-SFEDVP--E-  147 (365)
T ss_dssp             CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-----SSEEEES-SGGGSC--C-
T ss_pred             CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc-----ccceecc-Chhhcc--c-
Confidence            3345579999999999987765532       2347899999998777776665432     3455543 344433  1 


Q ss_pred             ccceEEecchhccCC
Q 021975          237 FVDAVHAGAALHCWP  251 (304)
Q Consensus       237 ~fD~V~~~~vl~h~~  251 (304)
                      ..-+|+++.++..+|
T Consensus       148 ~~g~iiaNE~fDAlP  162 (365)
T d1zkda1         148 GPAVILANEYFDVLP  162 (365)
T ss_dssp             SSEEEEEESSGGGSC
T ss_pred             CCeEEEecccCcccc
Confidence            124566655555444

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.05  E-value=0.11  Score=39.02  Aligned_cols=87  Identities=7%  Similarity=0.080  Sum_probs=55.2

Q ss_pred             eEEEEcCCc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccceEEecch
Q 021975          169 LLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (304)
Q Consensus       169 ~vLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (304)
                      +|.=||+|.  +.+...|.+.+.  +|+++|.+++.++.+++.    +     .+.....+.+.+    ...|+|+..--
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~----~-----~~~~~~~~~~~~----~~~DiIilavp   66 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVER----Q-----LVDEAGQDLSLL----QTAKIIFLCTP   66 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT----T-----SCSEEESCGGGG----TTCSEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHh----h-----ccceeeeecccc----cccccccccCc
Confidence            567789983  446677777787  999999999988877662    1     111222232222    35788886431


Q ss_pred             hccCCCHHHHHHHHHHhcccCcEEEEE
Q 021975          247 LHCWPSPSNAVAEISRILRSGGVFVGT  273 (304)
Q Consensus       247 l~h~~d~~~~l~~~~r~LkpgG~lvi~  273 (304)
                      ..   .-..+++++...|+++-+++-.
T Consensus        67 ~~---~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          67 IQ---LILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             HH---HHHHHHHHHGGGSCTTCEEEEC
T ss_pred             Hh---hhhhhhhhhhhhcccccceeec
Confidence            11   2246788888888887765433

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.78  E-value=0.02  Score=44.04  Aligned_cols=96  Identities=21%  Similarity=0.123  Sum_probs=60.2

Q ss_pred             hcccCCCeEEEEcC-Cc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccc
Q 021975          162 FKSAQGGLLVDVSC-GS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD  239 (304)
Q Consensus       162 l~~~~~~~vLDiGc-G~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD  239 (304)
                      .+..++.+||=.|. |. |.....+++.. +.+|++++-+++..+.+++.    +    ....+-..+....--....+|
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~l----G----a~~~i~~~~~~~~~~~~~g~D   93 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL----G----AEEAATYAEVPERAKAWGGLD   93 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT----T----CSEEEEGGGHHHHHHHTTSEE
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhccc-cccccccccccccccccccc----c----cceeeehhhhhhhhhcccccc
Confidence            44567889999885 43 67777777774 35999999998887777762    2    222221111100001134699


Q ss_pred             eEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +|+-.-     .   ..+.+..+.|+++|+++..-
T Consensus        94 ~v~d~~-----G---~~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          94 LVLEVR-----G---KEVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             EEEECS-----C---TTHHHHHTTEEEEEEEEEC-
T ss_pred             cccccc-----c---hhHHHHHHHHhcCCcEEEEe
Confidence            988632     1   13677889999999988754

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=93.74  E-value=0.72  Score=38.21  Aligned_cols=115  Identities=17%  Similarity=0.082  Sum_probs=76.4

Q ss_pred             HHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCC-C----
Q 021975          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P----  232 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p----  232 (304)
                      +.+.+.. ....|+.+|||.=.-...+. ..++..++-+|. +++++.-++.+...+.....+...+..|+.+- .    
T Consensus        82 ~~~~~~~-g~~qvV~LGaGlDTr~~Rl~-~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~  158 (297)
T d2uyoa1          82 FNNAVID-GIRQFVILASGLDSRAYRLD-WPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALR  158 (297)
T ss_dssp             HHHHHHT-TCCEEEEETCTTCCHHHHSC-CCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHH
T ss_pred             HHHHHhh-CCCeEEEeCcccCChhhhcC-CCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHH
Confidence            3344433 23467779999866555442 234567888884 88888888888776533446678888888652 1    


Q ss_pred             ---CCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEe
Q 021975          233 ---FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ---~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                         +....--++++-+++.+++..  ..+++.+.....||+.+++...
T Consensus       159 ~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~  206 (297)
T d2uyoa1         159 SAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  206 (297)
T ss_dssp             HTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             hcCCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence               222233456666778888643  4789999999999998887643

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.29  Score=39.72  Aligned_cols=81  Identities=17%  Similarity=0.140  Sum_probs=60.3

Q ss_pred             cCCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---------
Q 021975          165 AQGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------  232 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------  232 (304)
                      .+++++|-.|++.|-   ....|++.|.  +|+..|.+++.++.+.+.++..+  ...++.++.+|+.+..         
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v~~~v~~~   83 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAG--YPGTLIPYRCDLSNEEDILSMFSAI   83 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEEEccCCCHHHHHHHHHHH
Confidence            357899999998873   4566667776  99999999999998888887765  3457888999997732         


Q ss_pred             -CCCCccceEEecchhcc
Q 021975          233 -FASGFVDAVHAGAALHC  249 (304)
Q Consensus       233 -~~~~~fD~V~~~~vl~h  249 (304)
                       -.-+..|+++.+....+
T Consensus        84 ~~~~g~iD~lVnnAg~~~  101 (257)
T d1xg5a_          84 RSQHSGVDICINNAGLAR  101 (257)
T ss_dssp             HHHHCCCSEEEECCCCCC
T ss_pred             HHhcCCCCEEEecccccC
Confidence             01246899988765443

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=93.52  E-value=0.23  Score=40.28  Aligned_cols=109  Identities=16%  Similarity=0.052  Sum_probs=73.1

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCC----------------------------------------CCeEEEEeCCHHHHHH
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGT----------------------------------------YSGVVALDFSENMLRQ  205 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~----------------------------------------~~~v~giD~s~~~~~~  205 (304)
                      .+..++|--||+|+++...+....                                        ...++|.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            345799999999999877654210                                        1246899999999998


Q ss_pred             HH---HHHHhcCccCCCCeEEEEccCCCCC-----CCCCccceEEecchh-ccCC----C----HHHHHHHHHHhcccCc
Q 021975          206 CY---DFIKQDNTILTSNLALVRADVCRLP-----FASGFVDAVHAGAAL-HCWP----S----PSNAVAEISRILRSGG  268 (304)
Q Consensus       206 a~---~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~~fD~V~~~~vl-~h~~----d----~~~~l~~~~r~LkpgG  268 (304)
                      |+   ++++..+  ....+.+.+.|+.+..     .+....++|+++--. |-+.    .    ...+...+.+++....
T Consensus       130 A~~~r~n~~~Ag--l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s  207 (249)
T d1o9ga_         130 ARRLRERLTAEG--GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA  207 (249)
T ss_dssp             HHHHHHHHHHTT--SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHcC--CCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCc
Confidence            84   5777777  5678999999986542     123456899996332 1121    1    2345566777886666


Q ss_pred             EEEEEEeC
Q 021975          269 VFVGTTFL  276 (304)
Q Consensus       269 ~lvi~~~~  276 (304)
                      .++++...
T Consensus       208 ~~~it~~~  215 (249)
T d1o9ga_         208 VIAVTDRS  215 (249)
T ss_dssp             EEEEEESS
T ss_pred             EEEEeCch
Confidence            66666543

>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.023  Score=35.34  Aligned_cols=33  Identities=12%  Similarity=0.292  Sum_probs=23.6

Q ss_pred             cCCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      .+..+.||.|++.....+.        ..+.+.|..||.+.
T Consensus         8 ~~~~~~Cp~Cgs~~ii~D~--------~~Ge~vC~~CG~Vl   40 (58)
T d1dl6a_           8 ALPRVTCPNHPDAILVEDY--------RAGDMICPECGLVV   40 (58)
T ss_dssp             CCSCCSBTTBSSSCCEECS--------SSCCEECTTTCCEE
T ss_pred             cccccCCCCCCCCCEEEEC--------CCCcEecccCCCEe
Confidence            3566899999998544321        12789999999863

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=93.39  E-value=0.016  Score=35.92  Aligned_cols=43  Identities=21%  Similarity=0.309  Sum_probs=25.9

Q ss_pred             CCcCCeeeccCCCccccc-cCCCCccccccccCceeeCCCCccc
Q 021975           55 ELEGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        55 ~~~~~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      .+....+.||.|++.... ...+.-..++-+.-.+.|..||+.+
T Consensus        10 ~~pt~~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~w   53 (57)
T d1qypa_          10 TLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW   53 (57)
T ss_dssp             SSCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred             cCCcccCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCcc
Confidence            334455789999995311 1111112344445688999999987

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.35  Score=36.52  Aligned_cols=100  Identities=10%  Similarity=0.031  Sum_probs=65.1

Q ss_pred             hhcccCCCeEEEEcCCc--cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------
Q 021975          161 YFKSAQGGLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (304)
                      ..+..++.+||=.|+|.  |.....+++.. +.+|++++.+++-.+.+++.    +    .. .++...-.++.      
T Consensus        23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~l----G----a~-~vi~~~~~d~~~~v~~~   92 (179)
T d1qora2          23 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKA----G----AW-QVINYREEDLVERLKEI   92 (179)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHHH
T ss_pred             HhCCCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhc----C----Ce-EEEECCCCCHHHHHHHH
Confidence            33456788999987664  66777777763 34999999999998888763    1    12 23322212211      


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      -....+|+|+..-.-       ..+......|+++|++++.....
T Consensus        93 t~g~g~d~v~d~~g~-------~~~~~~~~~l~~~G~~v~~g~~~  130 (179)
T d1qora2          93 TGGKKVRVVYDSVGR-------DTWERSLDCLQRRGLMVSFGNSS  130 (179)
T ss_dssp             TTTCCEEEEEECSCG-------GGHHHHHHTEEEEEEEEECCCTT
T ss_pred             hCCCCeEEEEeCccH-------HHHHHHHHHHhcCCeeeeccccc
Confidence            124568888765421       24788899999999987755433

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.32  E-value=0.14  Score=39.38  Aligned_cols=99  Identities=14%  Similarity=0.069  Sum_probs=64.2

Q ss_pred             cccCCCeEEEEcCC--ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC-CC--CCCCCCc
Q 021975          163 KSAQGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CR--LPFASGF  237 (304)
Q Consensus       163 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~--lp~~~~~  237 (304)
                      ...++.+||=-|.+  -|.+..++++.. +.+|+++.-+++-.+.+++.-        ....+-..+. ..  .....+.
T Consensus        28 ~~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lG--------a~~vi~~~~~~~~~~~~~~~~g   98 (176)
T d1xa0a2          28 LTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLG--------AKEVLAREDVMAERIRPLDKQR   98 (176)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTT--------CSEEEECC---------CCSCC
T ss_pred             CCCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcc--------cceeeecchhHHHHHHHhhccC
Confidence            34457789988864  467788888774 459999998888888887631        2211111111 11  1123567


Q ss_pred             cceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +|+|+-.-.       ...+.+..+.|++||+++......
T Consensus        99 vD~vid~vg-------g~~~~~~l~~l~~~Griv~~G~~~  131 (176)
T d1xa0a2          99 WAAAVDPVG-------GRTLATVLSRMRYGGAVAVSGLTG  131 (176)
T ss_dssp             EEEEEECST-------TTTHHHHHHTEEEEEEEEECSCCS
T ss_pred             cCEEEEcCC-------chhHHHHHHHhCCCceEEEeeccc
Confidence            998877432       224888999999999999877654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.03  E-value=0.051  Score=42.13  Aligned_cols=106  Identities=17%  Similarity=0.090  Sum_probs=61.2

Q ss_pred             cCCCeEEEEcCCc-cHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCC---CCeEEEEccCCCCC--CC----
Q 021975          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT---SNLALVRADVCRLP--FA----  234 (304)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~---~~i~~~~~d~~~lp--~~----  234 (304)
                      -++.+||-||+|. |......+... +++|+.+|.++..+++.+......-....   ....-..+.+..+.  +.    
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            4578999999997 55555555442 45999999999988888874321100000   00000000010000  00    


Q ss_pred             ------CCccceEEecchhccCCCHHHHHHHHHHhcccCcEEE
Q 021975          235 ------SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV  271 (304)
Q Consensus       235 ------~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lv  271 (304)
                            -...|+|+..-.+.--.-|.-+=+++.+.+|||.+++
T Consensus       106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII  148 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence                  1247999887655554555556688999999998766

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.58  E-value=0.025  Score=33.99  Aligned_cols=41  Identities=17%  Similarity=0.381  Sum_probs=25.5

Q ss_pred             cCCeeeccCCCccccc-cCCCCccccccccCceeeCCCCccc
Q 021975           57 EGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        57 ~~~~l~CP~C~~~l~~-~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ..+++.||.|++.-.. ...+.-+.++-+...+.|..||+.+
T Consensus         6 ~T~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           6 QTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             ECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             ccCCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            4578999999995311 1111112334444688999999876

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=92.16  E-value=0.38  Score=36.19  Aligned_cols=100  Identities=16%  Similarity=0.127  Sum_probs=58.8

Q ss_pred             hhcccCCCeEEEEcCCccHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-------
Q 021975          161 YFKSAQGGLLVDVSCGSGLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------  232 (304)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~-~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------  232 (304)
                      .....++.+||=+|+|.+.. ...+++......|+++|.+++-++.+++.        .. -+++...-++..       
T Consensus        23 ~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~--------GA-d~~in~~~~~~~~~~~~~~   93 (175)
T d1cdoa2          23 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF--------GA-TDFVNPNDHSEPISQVLSK   93 (175)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT--------TC-CEEECGGGCSSCHHHHHHH
T ss_pred             hhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc--------CC-cEEEcCCCcchhHHHHHHh
Confidence            34556788999999998544 44444443356899999999999888872        11 123322111111       


Q ss_pred             CCCCccceEEecchhccCCCHHHHHHHHHHhcccC-cEEEEEEe
Q 021975          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~lvi~~~  275 (304)
                      ...+.+|+|+-.-     .. ..++......+++| |++++...
T Consensus        94 ~~~~G~d~vid~~-----G~-~~~~~~a~~~~~~g~~~~~~~g~  131 (175)
T d1cdoa2          94 MTNGGVDFSLECV-----GN-VGVMRNALESCLKGWGVSVLVGW  131 (175)
T ss_dssp             HHTSCBSEEEECS-----CC-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             hccCCcceeeeec-----CC-HHHHHHHHHHhhCCCcceeEEEe
Confidence            1134588886643     22 33466667776666 55444433

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.94  E-value=0.056  Score=35.06  Aligned_cols=42  Identities=17%  Similarity=0.199  Sum_probs=26.0

Q ss_pred             CCeeeccCCCcccc-ccCCCCccccccccCceeeCCCCccccC
Q 021975           58 GDLFSCPICYEPLI-RKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (304)
Q Consensus        58 ~~~l~CP~C~~~l~-~~~~~~~~~~~i~~~~l~C~~C~~~~~~   99 (304)
                      .....||.|++.-. ....+.-..++-+.-.+.|.+|++.+..
T Consensus        21 ~t~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~   63 (72)
T d1twfi2          21 RSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTS   63 (72)
T ss_dssp             CCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred             ccCCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCccc
Confidence            33578999999521 1111222334445568999999998744

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.072  Score=44.89  Aligned_cols=73  Identities=12%  Similarity=0.079  Sum_probs=53.5

Q ss_pred             CCeEEEEcCCccHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---CCCCccceEE
Q 021975          167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVH  242 (304)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~  242 (304)
                      +.+|+|+-||.|.+...|.+.|...+ +.++|+++.+++..+.+.        ++..++.+|+.++.   ++...+|+++
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~--------~~~~~~~~di~~~~~~~~~~~~~Dll~   73 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF--------PHTQLLAKTIEGITLEEFDRLSFDMIL   73 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC--------CCCCcccCchhhCCHhHcCCCCccEEE
Confidence            45899999999999998888875333 679999999888877753        45567778887654   2223689998


Q ss_pred             ecchh
Q 021975          243 AGAAL  247 (304)
Q Consensus       243 ~~~vl  247 (304)
                      ...-.
T Consensus        74 ggpPC   78 (343)
T d1g55a_          74 MSPPC   78 (343)
T ss_dssp             ECCC-
T ss_pred             eeccc
Confidence            86543

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.042  Score=35.10  Aligned_cols=27  Identities=26%  Similarity=0.652  Sum_probs=20.4

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      .+.||.|+.+|....           +.+.|..|...|
T Consensus         2 ~~~CP~C~~eL~~~~-----------~~~~C~~C~~~~   28 (71)
T d2jnea1           2 ELHCPQCQHVLDQDN-----------GHARCRSCGEFI   28 (71)
T ss_dssp             CCBCSSSCSBEEEET-----------TEEEETTTCCEE
T ss_pred             CCcCCCccCcccccC-----------CCEehhhhhhhh
Confidence            368999999987754           567777777665

>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Escherichia coli [TaxId: 562]

Probab=91.25  E-value=0.048  Score=29.94  Aligned_cols=25  Identities=36%  Similarity=0.829  Sum_probs=19.7

Q ss_pred             eccCCCccccccCCCCccccccccCceeeCCCCccccCC
Q 021975           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (304)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  100 (304)
                      .||.|+.+-...+              .|..||+.|...
T Consensus         4 ~CP~C~~~~a~GD--------------qCe~CG~~~~p~   28 (35)
T d1pfva3           4 TCPKCKSPDQYGD--------------NCEVCGATYSPT   28 (35)
T ss_dssp             ECTTTCCSSEETT--------------BCTTTCCBCCGG
T ss_pred             ECCCCCCcccccc--------------cHHHcCCcCCHH
Confidence            6999999876644              799999988443

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=91.14  E-value=0.58  Score=38.51  Aligned_cols=89  Identities=16%  Similarity=0.293  Sum_probs=61.8

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC-CCccceEEecchh
Q 021975          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGAAL  247 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl  247 (304)
                      +|||+=||.|.+..-+.+.|. ..+.++|+++.+++..+.+.         .-.++.+|+.++... -..+|+++...-.
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~-~~~~a~e~d~~a~~~~~~N~---------~~~~~~~Di~~~~~~~~~~~dll~~g~PC   71 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNH---------SAKLIKGDISKISSDEFPKCDGIIGGPPC   71 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTC-EEEEEEECCHHHHHHHHHHC---------CSEEEESCTTTSCGGGSCCCSEEEECCCC
T ss_pred             eEEEeCcCcCHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHC---------CCCCccCChhhCCHhHcccccEEeecccc
Confidence            699999999999999988885 35669999999888777653         235678899887422 2358999986443


Q ss_pred             ccC---------CCHH-HH---HHHHHHhcccC
Q 021975          248 HCW---------PSPS-NA---VAEISRILRSG  267 (304)
Q Consensus       248 ~h~---------~d~~-~~---l~~~~r~Lkpg  267 (304)
                      ..+         .|+. .+   +-++...++|.
T Consensus        72 q~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk  104 (324)
T d1dcta_          72 QSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI  104 (324)
T ss_dssp             TTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCS
T ss_pred             cccccccccccccccccchHHHHHHHHHhhCCc
Confidence            322         3443 22   33456677884

>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Pyrococcus abyssi [TaxId: 29292]

Probab=91.03  E-value=0.063  Score=29.46  Aligned_cols=26  Identities=19%  Similarity=0.617  Sum_probs=19.9

Q ss_pred             eccCCCccccccCCCCccccccccCceeeCCCCccccCCC
Q 021975           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (304)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~~  101 (304)
                      .||.|+.+....+              .|..||+.|...+
T Consensus         4 ~CP~C~~~~a~GD--------------qCe~CG~~~~p~e   29 (35)
T d1rqga3           4 TCPYCGAEDQKGD--------------QCEVCGRPLTPEI   29 (35)
T ss_dssp             BCSSSCCSCCCTT--------------TCSSSCCCCCTTS
T ss_pred             ECCCCCCCcccCc--------------chhhcCCccCHHH
Confidence            6999999876633              6999999885443

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.98  E-value=2.5  Score=35.31  Aligned_cols=120  Identities=13%  Similarity=0.166  Sum_probs=75.4

Q ss_pred             HHHHHhhcccCCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC------------------ccC
Q 021975          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN------------------TIL  217 (304)
Q Consensus       156 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------------~~~  217 (304)
                      ..+.+++...+...|+-+|||.=.....+....++..++=+|. |+.++.=++.++...                  ...
T Consensus        86 ~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~  164 (328)
T d1rjda_          86 AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLID  164 (328)
T ss_dssp             HHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEE
T ss_pred             HHHHHHHHHCCCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCC
Confidence            4455556555566899999999887777776666556666775 444443333332210                  002


Q ss_pred             CCCeEEEEccCCCCC---------CCCCccceEEecchhccCCCH--HHHHHHHHHhcccCcEEEEEEeCC
Q 021975          218 TSNLALVRADVCRLP---------FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       218 ~~~i~~~~~d~~~lp---------~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      ..+...+.+|+.++.         +....--++++-.|+.+++..  .++++.+.+... +|.+++.++..
T Consensus       165 s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~  234 (328)
T d1rjda_         165 QGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIG  234 (328)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECC
T ss_pred             CCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCC
Confidence            357888999987742         112223367777888888643  467887777775 56677777664

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.93  E-value=0.51  Score=38.08  Aligned_cols=104  Identities=17%  Similarity=0.232  Sum_probs=72.3

Q ss_pred             cCCCeEEEEcCCcc---HHHHHHHHhCCCCeEEEE-eCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--------
Q 021975          165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVAL-DFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------  232 (304)
Q Consensus       165 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~gi-D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------  232 (304)
                      ..++++|=.|.+.|   .....|++.|.  +|+.. +-+...++.+.+.+...+    .++.++.+|+.+..        
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g----~~~~~~~~D~~~~~~v~~~~~~   77 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG----AQGVAIQADISKPSEVVALFDK   77 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcC----CCceEecCCCCCHHHHHHHHHH
Confidence            45788998887666   45667777776  78764 567777788888777765    67889999997632        


Q ss_pred             --CCCCccceEEecchhccCCCHH-------------------HHHHHHHHhcccCcEEEEEE
Q 021975          233 --FASGFVDAVHAGAALHCWPSPS-------------------NAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~-------------------~~l~~~~r~LkpgG~lvi~~  274 (304)
                        ..-+..|+++.+..+.+..+..                   .+.+.+...|+.+|.+++..
T Consensus        78 ~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~  140 (259)
T d1ja9a_          78 AVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS  140 (259)
T ss_dssp             HHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence              1124699999877665543221                   34677788888887766654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.26  E-value=0.63  Score=33.09  Aligned_cols=86  Identities=19%  Similarity=0.078  Sum_probs=59.7

Q ss_pred             CCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----CCCCccceEEecchhccC
Q 021975          175 CGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVHAGAALHCW  250 (304)
Q Consensus       175 cG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~V~~~~vl~h~  250 (304)
                      ||.|..+..+.+......++.+|.++...+..+.          .++.++.+|..+..    ..-...+.+++..     
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----   70 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----------SGANFVHGDPTRVSDLEKANVRGARAVIVNL-----   70 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----------TTCEEEESCTTSHHHHHHTTCTTCSEEEECC-----
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----------cCccccccccCCHHHHHHhhhhcCcEEEEec-----
Confidence            6778889888887655689999999998877765          56889999987632    2223567676632     


Q ss_pred             CCHH--HHHHHHHHhcccCcEEEEEEe
Q 021975          251 PSPS--NAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       251 ~d~~--~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      ++..  ..+....+.+.|...++....
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~iia~~~   97 (129)
T d2fy8a1          71 ESDSETIHCILGIRKIDESVRIIAEAE   97 (129)
T ss_dssp             SSHHHHHHHHHHHHHHCSSSCEEEECS
T ss_pred             cchhhhHHHHHHHHHHCCCceEEEEEc
Confidence            2333  345566777888877666654

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=89.85  E-value=0.35  Score=41.96  Aligned_cols=51  Identities=12%  Similarity=0.142  Sum_probs=41.5

Q ss_pred             ccCCCeEEEEcCCccHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 021975          164 SAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDN  214 (304)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~  214 (304)
                      ..++..++|||+-.|.++..++..  +...+|+++|+++...+..+++++.+.
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~  262 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT  262 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence            346779999999999988877654  224599999999999999999887654

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.42  E-value=0.043  Score=34.47  Aligned_cols=43  Identities=19%  Similarity=0.431  Sum_probs=26.5

Q ss_pred             cCcCCcCCeeeccCCCccccccCCCCccccccccCceeeCCCCcc
Q 021975           52 QTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (304)
Q Consensus        52 ~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~   96 (304)
                      .+.......+.||.|++.....+...  +-.-..+.++|..|+..
T Consensus         6 ~rd~~~~~~y~Cp~C~~~ys~Lda~~--L~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_           6 ERDSTNRASFKCPVCSSTFTDLEANQ--LFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             SSSCCSSSEEECSSSCCEEEHHHHHH--HEETTTTEEBCSSSCCB
T ss_pred             hhccccCCceECCCCCCCcchhhHHH--hcCcCCCeEEecCCCCE
Confidence            34455567899999999643322111  11112378999999865

>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.21  E-value=0.11  Score=31.09  Aligned_cols=30  Identities=27%  Similarity=0.542  Sum_probs=20.8

Q ss_pred             eeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      ...||.|++.....+.        ..+.+.|..||.+.
T Consensus         5 ~~~Cp~Cgs~~iv~D~--------~~Ge~vC~~CG~Vi   34 (50)
T d1pfta_           5 QKVCPACESAELIYDP--------ERGEIVCAKCGYVI   34 (50)
T ss_dssp             CCSCTTTSCCCEEEET--------TTTEEEESSSCCBC
T ss_pred             cccCcCCCCCcEEEEC--------CCCeEecccCCcEe
Confidence            3579999986433221        23789999999763

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=89.02  E-value=0.4  Score=36.20  Aligned_cols=96  Identities=13%  Similarity=0.083  Sum_probs=62.1

Q ss_pred             CCCeEEEEcC--CccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCC-C--CCCCCCccce
Q 021975          166 QGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-R--LPFASGFVDA  240 (304)
Q Consensus       166 ~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~--lp~~~~~fD~  240 (304)
                      ++.+||--|+  |-|.+..++++.. +.+|+++.-+++-.+.+++.-        ....+...+.. .  .....+.+|+
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~lG--------ad~vi~~~~~~~~~~~~~~~~gvd~   93 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLG--------ASEVISREDVYDGTLKALSKQQWQG   93 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHT--------CSEEEEHHHHCSSCCCSSCCCCEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhhc--------ccceEeccchhchhhhcccCCCceE
Confidence            3556777664  3467888888873 349999999888877777632        22222222211 1  1123457888


Q ss_pred             EEecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      |+-.-     .  ...+.+..+.|+++|+++..-...
T Consensus        94 vid~v-----g--g~~~~~~~~~l~~~G~iv~~G~~~  123 (167)
T d1tt7a2          94 AVDPV-----G--GKQLASLLSKIQYGGSVAVSGLTG  123 (167)
T ss_dssp             EEESC-----C--THHHHHHHTTEEEEEEEEECCCSS
T ss_pred             EEecC-----c--HHHHHHHHHHhccCceEEEeeccC
Confidence            77642     2  346889999999999998876554

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.01  E-value=1.4  Score=35.44  Aligned_cols=103  Identities=18%  Similarity=0.240  Sum_probs=70.6

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCC-HHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC---------
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS-ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------  232 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s-~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------  232 (304)
                      +++++|=-|++.|-   ....|++.|.  +|+..|.+ ++.++...+.++..+    .++.++.+|+.+..         
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g----~~~~~~~~D~~~~~~v~~~~~~~   90 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG----SDAACVKANVGVVEDIVRMFEEA   90 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhC----CceeeEeCCCCCHHHHHHHHHHH
Confidence            57889999988773   5667777776  99999876 556666666666655    67899999997732         


Q ss_pred             -CCCCccceEEecchhccCCCH-------------------HHHHHHHHHhcccCcEEEEEE
Q 021975          233 -FASGFVDAVHAGAALHCWPSP-------------------SNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~-------------------~~~l~~~~r~LkpgG~lvi~~  274 (304)
                       -.-+..|+++.+.........                   ....+.+.+.|+.+|.+++..
T Consensus        91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence             012468988886554433211                   124677788888888766654

>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=88.87  E-value=0.065  Score=34.61  Aligned_cols=31  Identities=23%  Similarity=0.597  Sum_probs=22.0

Q ss_pred             CeeeccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 021975           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      ....||.|+..-....         ..+.|.|..|+..+.
T Consensus        26 ~ky~Cp~Cgk~~vkR~---------a~GIW~C~kC~~~~A   56 (73)
T d1vqoz1          26 EDHACPNCGEDRVDRQ---------GTGIWQCSYCDYKFT   56 (73)
T ss_dssp             SCBCCSSSSCSCEEEE---------ETTEEEETTTCCEEE
T ss_pred             CCccCCCCCCceeEEE---------EEEEEECCCCCCEEe
Confidence            4578999999532212         127999999998763

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.85  E-value=0.81  Score=36.72  Aligned_cols=85  Identities=15%  Similarity=0.206  Sum_probs=61.1

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----------
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (304)
                      .++++|=-|++.|-   ....|++.|.  +|+.+|.+.+.++.+.+.+....  ...++.++.+|+.+..          
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQF--EPQKTLFIQCDVADQQQLRDTFRKVV   77 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTS--CGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhc--CCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            36788888987763   4556666676  99999999998888877765442  2357889999997742          


Q ss_pred             CCCCccceEEecchhccCCCHH
Q 021975          233 FASGFVDAVHAGAALHCWPSPS  254 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~  254 (304)
                      -.-+..|+++.+..+....+.+
T Consensus        78 ~~~G~iDilVnnAg~~~~~~~~   99 (254)
T d2gdza1          78 DHFGRLDILVNNAGVNNEKNWE   99 (254)
T ss_dssp             HHHSCCCEEEECCCCCCSSSHH
T ss_pred             HHcCCcCeecccccccccccch
Confidence            0125799999987776666554

>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=88.66  E-value=0.074  Score=34.35  Aligned_cols=30  Identities=27%  Similarity=0.616  Sum_probs=21.7

Q ss_pred             CeeeccCCCcc-ccccCCCCccccccccCceeeCCCCcccc
Q 021975           59 DLFSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (304)
Q Consensus        59 ~~l~CP~C~~~-l~~~~~~~~~~~~i~~~~l~C~~C~~~~~   98 (304)
                      ....||.|+.. +.+..          .+.|.|..|+..+.
T Consensus        26 ~ky~Cp~Cgk~~vkR~a----------~GIW~C~kC~~~~A   56 (73)
T d1jj2y_          26 KKHKCPVCGFKKLKRAG----------TGIWMCGHCGYKIA   56 (73)
T ss_dssp             SCBCCSSSCCSCEEEEE----------TTEEEETTTCCEEE
T ss_pred             CCccCCCCCCCceEEEE----------EEEEECCCCCCEEe
Confidence            45789999974 33322          27999999998763

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.32  E-value=0.58  Score=38.03  Aligned_cols=104  Identities=13%  Similarity=0.152  Sum_probs=69.9

Q ss_pred             CCeE-EEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----------
Q 021975          167 GGLL-VDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (304)
Q Consensus       167 ~~~v-LDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (304)
                      +++| |-=|++.|-   ....|++.+ ..+|+..+.+++.++.+.+.++..+    .++.++.+|+.+..          
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~-g~~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dvs~~~sv~~~~~~~~   76 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLF-SGDVVLTARDVTRGQAAVQQLQAEG----LSPRFHQLDIDDLQSIRALRDFLR   76 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHS-SSEEEEEESSHHHHHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEEecCCHHHHHHHHHHHH
Confidence            4555 444555542   234555552 2499999999999999988887765    67899999998753          


Q ss_pred             CCCCccceEEecchhccCC---CH----------------HHHHHHHHHhcccCcEEEEEEe
Q 021975          233 FASGFVDAVHAGAALHCWP---SP----------------SNAVAEISRILRSGGVFVGTTF  275 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~---d~----------------~~~l~~~~r~LkpgG~lvi~~~  275 (304)
                      -.-+..|+++.+..+.+..   +.                ..+.+.+...|+++|.++....
T Consensus        77 ~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          77 KEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             HHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             HhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            0125799999987653321   11                1246777888899998776653

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.74  E-value=2.3  Score=32.07  Aligned_cols=93  Identities=11%  Similarity=0.030  Sum_probs=57.3

Q ss_pred             CCeEEEEc--CCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CCCCccc
Q 021975          167 GGLLVDVS--CGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASGFVD  239 (304)
Q Consensus       167 ~~~vLDiG--cG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~~fD  239 (304)
                      +.+||=.|  .|.|.+..++++......++++.-+++......+.+   +    .. .++...-+++.     .....+|
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~---g----ad-~vi~~~~~~~~~~~~~~~~~GvD  102 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL---G----FD-AAVNYKTGNVAEQLREACPGGVD  102 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS---C----CS-EEEETTSSCHHHHHHHHCTTCEE
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc---c----ce-EEeeccchhHHHHHHHHhccCce
Confidence            36788877  456899999998753346788887776555444322   1    11 22222211211     1134689


Q ss_pred             eEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      +|+-.-.       ...++...+.|+++|+++..-
T Consensus       103 vv~D~vG-------g~~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2         103 VYFDNVG-------GDISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             EEEESSC-------HHHHHHHHTTEEEEEEEEEC-
T ss_pred             EEEecCC-------chhHHHHhhhccccccEEEec
Confidence            9876432       346889999999999998753

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.56  E-value=2  Score=34.21  Aligned_cols=104  Identities=16%  Similarity=0.200  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----C----
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F----  233 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~----  233 (304)
                      +++++|--|++.|-   ....|++.|.  +|+.+|.+++.++.+.+.+....   ..++.++.+|+.+..     +    
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~   78 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY---GVETMAFRCDVSNYEEVKKLLEAVK   78 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh---CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            47789999988763   4666777776  99999999887776665543321   257888999997632     0    


Q ss_pred             -CCCccceEEecchhccCC-----CHH--------------HHHHHHHHhccc--CcEEEEEE
Q 021975          234 -ASGFVDAVHAGAALHCWP-----SPS--------------NAVAEISRILRS--GGVFVGTT  274 (304)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~-----d~~--------------~~l~~~~r~Lkp--gG~lvi~~  274 (304)
                       .-+.+|+++.+..+.+..     +.+              .+.+.+.+.|+.  +|.++...
T Consensus        79 ~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~  141 (251)
T d1vl8a_          79 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIG  141 (251)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccc
Confidence             014799999876543332     111              245666777743  46666554

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.78  E-value=1.6  Score=34.72  Aligned_cols=79  Identities=18%  Similarity=0.176  Sum_probs=60.9

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----------
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (304)
                      .|+++|=-|++.|-   ....|++.|.  +|+.+|.+++.++...+.++..+    .++..+.+|+.+..          
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~~~~i~   79 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG----AKVHTFVVDCSNREDIYSSAKKVK   79 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEeeCCCHHHHHHHHHHHH
Confidence            57788888988873   5677777777  99999999999888888887655    68999999998742          


Q ss_pred             CCCCccceEEecchhccC
Q 021975          233 FASGFVDAVHAGAALHCW  250 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~  250 (304)
                      -..+..|+++.+..+.+.
T Consensus        80 ~~~g~idilinnag~~~~   97 (244)
T d1yb1a_          80 AEIGDVSILVNNAGVVYT   97 (244)
T ss_dssp             HHTCCCSEEEECCCCCCC
T ss_pred             HHcCCCceeEeecccccc
Confidence            123568998887665443

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=86.77  E-value=1.6  Score=34.95  Aligned_cols=75  Identities=17%  Similarity=0.278  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----C----
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F----  233 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~----  233 (304)
                      +++++|=-|.+.|-   ....|++.|.  +|+.+|.+++.++.+.+.++..+    .++..+.+|+.+..     +    
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~~~~~~~   77 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG----VEARSYVCDVTSEEAVIGTVDSVV   77 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT----SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHH
Confidence            57889988887763   4567777776  99999999999998888887765    67889999997632     0    


Q ss_pred             -CCCccceEEecch
Q 021975          234 -ASGFVDAVHAGAA  246 (304)
Q Consensus       234 -~~~~fD~V~~~~v  246 (304)
                       .-+..|+++.+..
T Consensus        78 ~~~g~iDilVnnaG   91 (260)
T d1zema1          78 RDFGKIDFLFNNAG   91 (260)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHhCCCCeehhhhc
Confidence             1257898887644

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=86.50  E-value=1.7  Score=34.85  Aligned_cols=78  Identities=15%  Similarity=0.209  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----------
Q 021975          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (304)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (304)
                      +++++|=.|++.|   .....|++.|.  +|+.++.++..++.+.+.+...+    ..+.++.+|+.+..          
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~----~~~~~~~~D~s~~~~~~~~~~~~~   78 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG----LNVEGSVCDLLSRTERDKLMQTVA   78 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC----CCceEEEeecCCHHHHHHHHHHHH
Confidence            5789999999877   34667777776  99999999998888888887765    67888999997642          


Q ss_pred             -CCCCccceEEecchhcc
Q 021975          233 -FASGFVDAVHAGAALHC  249 (304)
Q Consensus       233 -~~~~~fD~V~~~~vl~h  249 (304)
                       .-.+..|+++....+.+
T Consensus        79 ~~~~g~idilinnag~~~   96 (258)
T d1ae1a_          79 HVFDGKLNILVNNAGVVI   96 (258)
T ss_dssp             HHTTSCCCEEEECCCCCC
T ss_pred             HHhCCCcEEEeccccccc
Confidence             11356888887655444

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=86.44  E-value=0.78  Score=37.96  Aligned_cols=69  Identities=16%  Similarity=0.147  Sum_probs=51.4

Q ss_pred             CCCeEEEEcCCccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCC-CCccceEEec
Q 021975          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG  244 (304)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~  244 (304)
                      .+.+|||+=||.|.+...|.+.|. .-+.++|+++.+++..+.+....          ..+|+.++... -..+|+++..
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~-~~v~a~e~d~~a~~~~~~N~~~~----------~~~Di~~~~~~~~~~~Dll~gg   78 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEK----------PEGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCC----------CBSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCCeEEEECccccHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHCCCC----------CcCchhcCchhhcceeeeeecc
Confidence            467999999999999999999885 35667999999999888876321          24677665321 2358999885


Q ss_pred             c
Q 021975          245 A  245 (304)
Q Consensus       245 ~  245 (304)
                      .
T Consensus        79 p   79 (327)
T d2c7pa1          79 F   79 (327)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.22  E-value=1.7  Score=30.74  Aligned_cols=84  Identities=10%  Similarity=0.131  Sum_probs=53.2

Q ss_pred             eEEEEcCCccHHHHHHH----HhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----CCCCccce
Q 021975          169 LLVDVSCGSGLFSRKFA----KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA  240 (304)
Q Consensus       169 ~vLDiGcG~G~~~~~l~----~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~  240 (304)
                      +|+=+|+|  .++..++    +.+.  +|+.+|.+++.++.+++.         .++.++.+|..+..    ..-...|.
T Consensus         2 ~IvI~G~G--~~G~~la~~L~~~g~--~v~vid~d~~~~~~~~~~---------~~~~vi~Gd~~~~~~l~~~~i~~a~~   68 (132)
T d1lssa_           2 YIIIAGIG--RVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAE---------IDALVINGDCTKIKTLEDAGIEDADM   68 (132)
T ss_dssp             EEEEECCS--HHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH---------CSSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred             EEEEECCC--HHHHHHHHHHHHCCC--CcceecCChhhhhhhhhh---------hhhhhccCcccchhhhhhcChhhhhh
Confidence            56667764  4444444    4455  999999999988877653         25678999987632    22245787


Q ss_pred             EEecchhccCCCHH--HHHHHHHHhcccCcEE
Q 021975          241 VHAGAALHCWPSPS--NAVAEISRILRSGGVF  270 (304)
Q Consensus       241 V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l  270 (304)
                      +++..     .+..  .....+.+.+.+.-++
T Consensus        69 vv~~t-----~~d~~N~~~~~~~k~~~~~~iI   95 (132)
T d1lssa_          69 YIAVT-----GKEEVNLMSSLLAKSYGINKTI   95 (132)
T ss_dssp             EEECC-----SCHHHHHHHHHHHHHTTCCCEE
T ss_pred             hcccC-----CcHHHHHHHHHHHHHcCCceEE
Confidence            77742     2333  2445566677777443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=86.11  E-value=1.2  Score=31.63  Aligned_cols=90  Identities=11%  Similarity=0.052  Sum_probs=51.1

Q ss_pred             eEEEEcCCc-cH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCC----CCCccceEE
Q 021975          169 LLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAVH  242 (304)
Q Consensus       169 ~vLDiGcG~-G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~V~  242 (304)
                      +++=+|+|. |. +...|.+.+.  +|+.+|.+++.++.++.          .....+.+|..+...    .-...|.|+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~--~vvvid~d~~~~~~~~~----------~~~~~~~gd~~~~~~l~~a~i~~a~~vi   69 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGH--EVLAVDINEEKVNAYAS----------YATHAVIANATEENELLSLGIRNFEYVI   69 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC--CCEEEESCHHHHHHTTT----------TCSEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC--eEEEecCcHHHHHHHHH----------hCCcceeeecccchhhhccCCccccEEE
Confidence            345556653 33 2334444565  99999999999887754          345677788876431    113467665


Q ss_pred             ecchhccCCC-HHHHHHHHHHhcccCcEEEEEE
Q 021975          243 AGAALHCWPS-PSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       243 ~~~vl~h~~d-~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      ....    .+ ....+-.+.+.+.+...++...
T Consensus        70 ~~~~----~~~~~~~~~~~~~~~~~~~~iiar~   98 (134)
T d2hmva1          70 VAIG----ANIQASTLTTLLLKELDIPNIWVKA   98 (134)
T ss_dssp             ECCC----SCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             EEcC----chHHhHHHHHHHHHHcCCCcEEeec
Confidence            5321    12 2234445555555666665544

>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.97  E-value=0.2  Score=27.78  Aligned_cols=33  Identities=30%  Similarity=0.430  Sum_probs=21.5

Q ss_pred             eccCCCccccccCCCCccccccccCceeeCCCCccccCC
Q 021975           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (304)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~~  100 (304)
                      .|+.|+++-.....    .+.  --.++|..||..-+.+
T Consensus         3 ~C~~C~spDT~l~k----e~R--~~~l~C~aCGa~r~V~   35 (37)
T d1neea2           3 ICHECNRPDTRIIR----EGR--ISLLKCEACGAKAPLK   35 (37)
T ss_dssp             HHTCCSSCSSCCEE----ETT--TTEEECSTTSCCCCSC
T ss_pred             ECCCCCCCCCEEEE----cCC--EEEEEeccCCCCcccc
Confidence            59999998533221    111  1578999999876543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=85.89  E-value=2.4  Score=33.52  Aligned_cols=100  Identities=17%  Similarity=0.163  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----------
Q 021975          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (304)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (304)
                      +++++|--|++.|   .....|++.|.  +|+.+|.+++.++...+.+.       .+...+.+|+.+..          
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~~~   73 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLG-------ANGKGLMLNVTDPASIESVLEKIR   73 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHG-------GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhC-------CCCcEEEEEecCHHHhhhhhhhhh
Confidence            4678888887776   34566667776  99999999988877766553       35678889987632          


Q ss_pred             CCCCccceEEecchhccCCCH-----H--------------HHHHHHHHhcc--cCcEEEEEE
Q 021975          233 FASGFVDAVHAGAALHCWPSP-----S--------------NAVAEISRILR--SGGVFVGTT  274 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~-----~--------------~~l~~~~r~Lk--pgG~lvi~~  274 (304)
                      -.-+..|+++.+....+....     +              .+.+.+.+.|+  .+|.++...
T Consensus        74 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~is  136 (243)
T d1q7ba_          74 AEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIG  136 (243)
T ss_dssp             HHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             cccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeec
Confidence            112579999987654443211     1              23566666663  467777655

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=85.74  E-value=1.7  Score=32.83  Aligned_cols=95  Identities=14%  Similarity=0.067  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCC--ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC--CCCCCCCCccceE
Q 021975          166 QGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRLPFASGFVDAV  241 (304)
Q Consensus       166 ~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~lp~~~~~fD~V  241 (304)
                      ++..||-.|..  .|....++++.. +.+|+++.-+++..+.+++.-        . -.++.-+-  ..-.+....+|.|
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~lG--------a-d~vi~~~~~~~~~~l~~~~~~~v  100 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLG--------A-SRVLPRDEFAESRPLEKQVWAGA  100 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHT--------E-EEEEEGGGSSSCCSSCCCCEEEE
T ss_pred             CCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhhc--------c-ccccccccHHHHHHHHhhcCCee
Confidence            34577766543  456777887774 459999999998888777631        1 12222221  1122345667876


Q ss_pred             EecchhccCCCHHHHHHHHHHhcccCcEEEEEEeCC
Q 021975          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                      +-     .+.  ...+.+..+.|+++|+++..-...
T Consensus       101 vD-----~Vg--g~~~~~~l~~l~~~Griv~~G~~~  129 (177)
T d1o89a2         101 ID-----TVG--DKVLAKVLAQMNYGGCVAACGLAG  129 (177)
T ss_dssp             EE-----SSC--HHHHHHHHHTEEEEEEEEECCCTT
T ss_pred             EE-----Ecc--hHHHHHHHHHhccccceEeecccC
Confidence            53     332  346899999999999999876543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=84.27  E-value=4.5  Score=31.78  Aligned_cols=103  Identities=22%  Similarity=0.223  Sum_probs=69.0

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-C--------
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F--------  233 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~--------  233 (304)
                      +++++|=.|++.|-   ....|++.|.  +|+.++.+.+.++...+.   .    ..++.++++|+.+.. .        
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~---~----~~~~~~~~~Dls~~~~i~~~~~~i~   74 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAA---L----EAEAIAVVADVSDPKAVEAVFAEAL   74 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHT---C----CSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHH---c----CCceEEEEecCCCHHHHHHHHHHHH
Confidence            57889999988763   4566667776  999999999876655442   2    367888999997632 0        


Q ss_pred             -CCCccceEEecchhccCCCHH-------------------HHHHHHHHhcccCcEEEEEEeCC
Q 021975          234 -ASGFVDAVHAGAALHCWPSPS-------------------NAVAEISRILRSGGVFVGTTFLR  277 (304)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~d~~-------------------~~l~~~~r~LkpgG~lvi~~~~~  277 (304)
                       .-+..|+++.+....+.....                   .+.+.+...++.++.+++.....
T Consensus        75 ~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a  138 (241)
T d2a4ka1          75 EEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVA  138 (241)
T ss_dssp             HHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCT
T ss_pred             HHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccc
Confidence             015789999876655433221                   23566677888888777665443

>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio gigas [TaxId: 879]

Probab=83.42  E-value=0.45  Score=28.45  Aligned_cols=38  Identities=18%  Similarity=0.542  Sum_probs=20.2

Q ss_pred             CCeeeccCCCcccccc-C------CCCccccccccCceeeCCCCcc
Q 021975           58 GDLFSCPICYEPLIRK-G------PTGLTLGAIYRSGFKCRKCDKT   96 (304)
Q Consensus        58 ~~~l~CP~C~~~l~~~-~------~~~~~~~~i~~~~l~C~~C~~~   96 (304)
                      |..++|++|+---.-. +      +.+.....+ ...++|+.|+..
T Consensus         1 M~~y~C~~CgyiYdp~~Gd~~~gi~pGT~F~~L-P~~w~CP~C~a~   45 (52)
T d2dsxa1           1 MDIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDL-PDDWACPVCGAS   45 (52)
T ss_dssp             CCCEEETTTCCEECTTTCBGGGTBCTTCCGGGS-CTTCBCTTTCCB
T ss_pred             CCeEEeCCCCeEECcccCCcccCCCCCCCHHHC-CCCCCCcCCCCc
Confidence            5678999998632110 0      111111111 257899999863

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=83.24  E-value=2.2  Score=33.90  Aligned_cols=78  Identities=18%  Similarity=0.185  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----------
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (304)
                      +++++|=.|++.|-   ....|++.|.  +|+.+|.+++.++.+.+.++..+    .++.++.+|+.+..          
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g----~~~~~~~~Dvt~~~~v~~~~~~~~   82 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG----YESSGYAGDVSKKEEISEVINKIL   82 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHHHHH
Confidence            46788888887662   3445555565  99999999999988888887655    57899999997732          


Q ss_pred             CCCCccceEEecchhcc
Q 021975          233 FASGFVDAVHAGAALHC  249 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~h  249 (304)
                      -.-+..|+++.+....+
T Consensus        83 ~~~g~iDilvnnag~~~   99 (251)
T d2c07a1          83 TEHKNVDILVNNAGITR   99 (251)
T ss_dssp             HHCSCCCEEEECCCCCC
T ss_pred             HhcCCceeeeecccccc
Confidence            11257999888665433

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=83.03  E-value=2.7  Score=33.54  Aligned_cols=78  Identities=13%  Similarity=0.213  Sum_probs=58.1

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----C----
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F----  233 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~----  233 (304)
                      +++++|=-|++.|-   ....|++.|.  +|+.+|.+++.++.+.+.+...+    .++.++.+|+.+..     +    
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~~~~~~~   80 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG----FKVEASVCDLSSRSERQELMNTVA   80 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC----CCceEEEeeCCCHHHHHHHHHHHH
Confidence            47889988988763   4566677776  99999999999988888777655    67888999997632     0    


Q ss_pred             C--CCccceEEecchhcc
Q 021975          234 A--SGFVDAVHAGAALHC  249 (304)
Q Consensus       234 ~--~~~fD~V~~~~vl~h  249 (304)
                      .  .+..|+++.+..+.+
T Consensus        81 ~~~~~~idilvnnAG~~~   98 (259)
T d2ae2a_          81 NHFHGKLNILVNNAGIVI   98 (259)
T ss_dssp             HHTTTCCCEEEECCCCCC
T ss_pred             HHhCCCceEEEECCceec
Confidence            0  236899998765444

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=82.95  E-value=1.9  Score=32.63  Aligned_cols=104  Identities=13%  Similarity=0.116  Sum_probs=56.1

Q ss_pred             HHHhhcccCCCeEEEEcCC---ccHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEc---cCCCC
Q 021975          158 AQEYFKSAQGGLLVDVSCG---SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA---DVCRL  231 (304)
Q Consensus       158 l~~~l~~~~~~~vLDiGcG---~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~---d~~~l  231 (304)
                      +.......++.+||=+.+|   .|.....+++.. +.+++++--+.+..+...+.+++.+    ... ++.-   +..+.
T Consensus        20 l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lG----ad~-vi~~~~~~~~~~   93 (189)
T d1gu7a2          20 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELG----ATQ-VITEDQNNSREF   93 (189)
T ss_dssp             HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHT----CSE-EEEHHHHHCGGG
T ss_pred             HHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhcc----ccE-EEeccccchhHH
Confidence            3344455667777777333   356777777763 3488887434333333333333333    111 2221   11111


Q ss_pred             C--------CCCCccceEEecchhccCCCHHHHHHHHHHhcccCcEEEEEE
Q 021975          232 P--------FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (304)
Q Consensus       232 p--------~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi~~  274 (304)
                      .        -..+.+|+|+-.     +.  ...+....+.|+++|+++..-
T Consensus        94 ~~~v~~~~~~~g~~vdvv~D~-----vg--~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2          94 GPTIKEWIKQSGGEAKLALNC-----VG--GKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HHHHHHHHHHHTCCEEEEEES-----SC--HHHHHHHHHTSCTTCEEEECC
T ss_pred             HHHHHHHHhhccCCceEEEEC-----CC--cchhhhhhhhhcCCcEEEEEC
Confidence            0        012457887753     22  234678889999999988654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.68  E-value=2.8  Score=33.10  Aligned_cols=74  Identities=20%  Similarity=0.176  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC------CCCC
Q 021975          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FASG  236 (304)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~~  236 (304)
                      .++++|-.|++.|   .....|++.|.  +|+.+|.+++.++...+.+        .++..++.|+.+..      -.-+
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~--------~~~~~~~~Dv~d~~~v~~~~~~~g   75 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVREC--------PGIEPVCVDLGDWEATERALGSVG   75 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHS--------TTCEEEECCTTCHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhc--------CCCeEEEEeCCCHHHHHHHHHHhC
Confidence            5789999998877   35667777776  9999999998877665532        45778889987632      1125


Q ss_pred             ccceEEecchhcc
Q 021975          237 FVDAVHAGAALHC  249 (304)
Q Consensus       237 ~fD~V~~~~vl~h  249 (304)
                      ..|+++.+..+.+
T Consensus        76 ~iDilVnnAg~~~   88 (244)
T d1pr9a_          76 PVDLLVNNAAVAL   88 (244)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             CceEEEecccccc
Confidence            7999998665544

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.57  E-value=1.7  Score=29.92  Aligned_cols=88  Identities=14%  Similarity=0.059  Sum_probs=54.4

Q ss_pred             cCCCeEEEEcCCccHH--HHHHHHhCCCCeEEEEe--CCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCCCCCCccce
Q 021975          165 AQGGLLVDVSCGSGLF--SRKFAKSGTYSGVVALD--FSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (304)
Q Consensus       165 ~~~~~vLDiGcG~G~~--~~~l~~~~~~~~v~giD--~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (304)
                      ..+++||=+|.|.=..  ...|.+.+.  +++.++  .+++....+.          ..++.+.........+.  .+++
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga--~v~v~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~dl~--~~~l   75 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGA--RLTVNALTFIPQFTVWAN----------EGMLTLVEGPFDETLLD--SCWL   75 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB--EEEEEESSCCHHHHHHHT----------TTSCEEEESSCCGGGGT--TCSE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEeccCChHHHHHHh----------cCCceeeccCCCHHHhC--CCcE
Confidence            3578999999997433  445555565  666655  4554444332          25688888777654432  4677


Q ss_pred             EEecchhccCCCHHHHHHHHHHhcccCcEEEE
Q 021975          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVG  272 (304)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi  272 (304)
                      |+...      +...+-.++.+..|+.|+++=
T Consensus        76 v~~at------~d~~~n~~i~~~a~~~~ilVN  101 (113)
T d1pjqa1          76 AIAAT------DDDTVNQRVSDAAESRRIFCN  101 (113)
T ss_dssp             EEECC------SCHHHHHHHHHHHHHTTCEEE
T ss_pred             EeecC------CCHHHHHHHHHHHHHcCCEEE
Confidence            76643      223445677778888887764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=82.31  E-value=3.2  Score=33.08  Aligned_cols=78  Identities=19%  Similarity=0.239  Sum_probs=57.7

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----C----
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F----  233 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~----  233 (304)
                      +++++|--|++.|-   ....|++.|.  +|+.+|.+++.++.+.+.+...+  ...++..+.+|+.+..     +    
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~~~Dvt~~~~v~~~~~~~~   78 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETA--PDAEVLTTVADVSDEAQVEAYVTATT   78 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHC--TTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhC--CCCeEEEEeccCCCHHHHHHHHHHHH
Confidence            46788888988773   5677777776  99999999998888877665544  3457889999997742     0    


Q ss_pred             -CCCccceEEecchh
Q 021975          234 -ASGFVDAVHAGAAL  247 (304)
Q Consensus       234 -~~~~fD~V~~~~vl  247 (304)
                       .-+..|+++.+..+
T Consensus        79 ~~~G~iDiLVnnAG~   93 (258)
T d1iy8a_          79 ERFGRIDGFFNNAGI   93 (258)
T ss_dssp             HHHSCCSEEEECCCC
T ss_pred             HHhCCCCEEEECCcc
Confidence             01578999986544

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=82.14  E-value=2.1  Score=34.17  Aligned_cols=79  Identities=16%  Similarity=0.246  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCC-HHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----CC--
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFS-ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s-~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (304)
                      +++++|--|++.|-   ....|++.|.  +|+.+|.+ ...++.+.+.+....   ..++.++.+|+.+..     +.  
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~   77 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH---GVKVLYDGADLSKGEAVRGLVDNA   77 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH---TSCEEEECCCTTSHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc---CCcEEEEECCCCCHHHHHHHHHHH
Confidence            46788877877763   4556777776  99999986 456666555543321   267889999997742     10  


Q ss_pred             ---CCccceEEecchhcc
Q 021975          235 ---SGFVDAVHAGAALHC  249 (304)
Q Consensus       235 ---~~~fD~V~~~~vl~h  249 (304)
                         -+..|+++.+..+.+
T Consensus        78 ~~~~G~iDiLVnnAG~~~   95 (260)
T d1x1ta1          78 VRQMGRIDILVNNAGIQH   95 (260)
T ss_dssp             HHHHSCCSEEEECCCCCC
T ss_pred             HHHhCCCcEEEeeccccc
Confidence               157999988765443

>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.84  E-value=0.17  Score=27.86  Aligned_cols=32  Identities=22%  Similarity=0.387  Sum_probs=20.6

Q ss_pred             eccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 021975           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (304)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~~~   99 (304)
                      .|+.|+++-.....    .+.+  -.++|..||..-+.
T Consensus         2 ~C~~C~spDT~l~k----e~R~--~~l~C~aCGa~r~V   33 (36)
T d1k81a_           2 ICRECGKPDTKIIK----EGRV--HLLKCMACGAIRPI   33 (36)
T ss_dssp             CCSSSCSCEEEEEE----ETTE--EEEEEETTTEEEEE
T ss_pred             CCCCCCCCCCEEEE----cCCE--EEEEeccCCCCCcc
Confidence            59999998543221    1111  47899999987543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.82  E-value=2.5  Score=33.71  Aligned_cols=77  Identities=23%  Similarity=0.281  Sum_probs=56.0

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----------
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (304)
                      +++++|=-|.+.|-   ....|++.|.  +|+.+|.+++.++.+.+.++..+    .++.++.+|+.+..          
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g----~~~~~~~~Dvs~~~~~~~~~~~~~   83 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG----GQAFACRCDITSEQELSALADFAI   83 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC----CcEEEEEccCCCHHHHHHHHHHHH
Confidence            57788888876653   3455556665  99999999999888888887755    67889999997732          


Q ss_pred             CCCCccceEEecchhc
Q 021975          233 FASGFVDAVHAGAALH  248 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl~  248 (304)
                      -.-+..|+++.+..+.
T Consensus        84 ~~~g~iDilvnnAG~~   99 (255)
T d1fmca_          84 SKLGKVDILVNNAGGG   99 (255)
T ss_dssp             HHHSSCCEEEECCCCC
T ss_pred             HHcCCCCEeeeCCcCC
Confidence            0015799998875543

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.73  E-value=0.68  Score=29.67  Aligned_cols=31  Identities=19%  Similarity=0.490  Sum_probs=23.0

Q ss_pred             CCeeeccCCCccccccCCCCccccccccCceeeCCCCccc
Q 021975           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (304)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~i~~~~l~C~~C~~~~   97 (304)
                      -+...||.|+..+......         ..+.|+.|+..|
T Consensus        16 ~~~k~CP~C~~~~~~~~~~---------~~~~C~~C~~~f   46 (73)
T d2ct7a1          16 PKFLWCAQCSFGFIYEREQ---------LEATCPQCHQTF   46 (73)
T ss_dssp             CCEECCSSSCCCEECCCSC---------SCEECTTTCCEE
T ss_pred             CCCCCCCCCCCEeEECCCC---------CEEEcCCCCCeE
Confidence            3467799999987664421         468899999887

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=81.34  E-value=7  Score=28.55  Aligned_cols=98  Identities=16%  Similarity=0.116  Sum_probs=55.6

Q ss_pred             CeEEEEcCCccH--HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccC---CCCCCCCCccceEE
Q 021975          168 GLLVDVSCGSGL--FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV---CRLPFASGFVDAVH  242 (304)
Q Consensus       168 ~~vLDiGcG~G~--~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~V~  242 (304)
                      ++|-=||+|.-.  +...|++.|.  +|+.+|.++..++..++.-....  ............   .++.-.-...|+|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~e~~~~aD~ii   77 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIA--EGPGLAGTAHPDLLTSDIGLAVKDADVIL   77 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEE--ESSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCch--hhhhhhhhhhhhhhhhhhHhHhcCCCEEE
Confidence            578889999733  4566667776  99999999988777765321100  000011110000   00000013578888


Q ss_pred             ecchhccCCCHHHHHHHHHHhcccCcEEEE
Q 021975          243 AGAALHCWPSPSNAVAEISRILRSGGVFVG  272 (304)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~lvi  272 (304)
                      ..--   ......+++++...|+++-.+++
T Consensus        78 i~v~---~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          78 IVVP---AIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             ECSC---GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             EEEc---hhHHHHHHHHhhhccCCCCEEEE
Confidence            6421   12346788999999998876553

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=81.18  E-value=4.5  Score=31.78  Aligned_cols=103  Identities=14%  Similarity=0.172  Sum_probs=67.1

Q ss_pred             eEEEEcCCccH---HHHHHHHhCCC-----CeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC--------
Q 021975          169 LLVDVSCGSGL---FSRKFAKSGTY-----SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------  232 (304)
Q Consensus       169 ~vLDiGcG~G~---~~~~l~~~~~~-----~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------  232 (304)
                      .||=-|++.|-   ....|++.|..     ..++..+.+++.++...+.++..+    .++.++.+|+.+..        
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g----~~~~~~~~Dvt~~~~v~~~~~~   78 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG----ALTDTITADISDMADVRRLTTH   78 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT----CEEEEEECCTTSHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEecCCCHHHHHHHHHH
Confidence            35667877763   45666676651     238999999999888888777655    67889999997742        


Q ss_pred             --CCCCccceEEecchhccCC-----CHH--------------HHHHHHHHhcc--cCcEEEEEEe
Q 021975          233 --FASGFVDAVHAGAALHCWP-----SPS--------------NAVAEISRILR--SGGVFVGTTF  275 (304)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~-----d~~--------------~~l~~~~r~Lk--pgG~lvi~~~  275 (304)
                        -.-+..|+++.+..+.+..     +++              .+.+.+.+.|+  .+|.++....
T Consensus        79 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS  144 (240)
T d2bd0a1          79 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITS  144 (240)
T ss_dssp             HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             HHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEec
Confidence              1125799999876544322     111              23566666664  3677776553

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.17  E-value=2.7  Score=33.76  Aligned_cols=79  Identities=19%  Similarity=0.177  Sum_probs=57.5

Q ss_pred             CCCeEEEEcCCcc---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----------
Q 021975          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (304)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (304)
                      +++++|-.|++.|   .....|++.|.  +|+.+|.+++.++.+.+.+...+. ...++.++.+|+.+..          
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~~~~   80 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGV-SEKQVNSVVADVTTEDGQDQIINSTL   80 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTC-CGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC-CCCceEEEEccCCCHHHHHHHHHHHH
Confidence            4778888888876   34566777776  999999999999988888776541 2346899999997732          


Q ss_pred             CCCCccceEEecchh
Q 021975          233 FASGFVDAVHAGAAL  247 (304)
Q Consensus       233 ~~~~~fD~V~~~~vl  247 (304)
                      -.-+..|+++.+...
T Consensus        81 ~~~g~iDilvnnAG~   95 (272)
T d1xkqa_          81 KQFGKIDVLVNNAGA   95 (272)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCceEEEeCCcc
Confidence            012468999886443

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=81.04  E-value=3  Score=33.39  Aligned_cols=75  Identities=17%  Similarity=0.297  Sum_probs=54.4

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----C----
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F----  233 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~----  233 (304)
                      +++++|-.|++.|-   ....|++.|.  +|+.+|.+++.++.+.+.+...     ..+.++.+|+.+..     +    
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~   77 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP-----DVISFVHCDVTKDEDVRNLVDTTI   77 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT-----TTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCC-----CceEEEEccCCCHHHHHHHHHHHH
Confidence            57889999988773   3556666676  9999999999888777766543     46788899997632     0    


Q ss_pred             -CCCccceEEecchh
Q 021975          234 -ASGFVDAVHAGAAL  247 (304)
Q Consensus       234 -~~~~fD~V~~~~vl  247 (304)
                       .-+..|+++.+..+
T Consensus        78 ~~~g~iD~lVnnAG~   92 (268)
T d2bgka1          78 AKHGKLDIMFGNVGV   92 (268)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCcceecccccc
Confidence             12478999976654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=80.58  E-value=0.23  Score=40.24  Aligned_cols=55  Identities=16%  Similarity=0.068  Sum_probs=36.4

Q ss_pred             EEEEccCCCC--CCCCCccceEEecch----hc-------cCCCHHHHHHHHHHhcccCcEEEEEEeC
Q 021975          222 ALVRADVCRL--PFASGFVDAVHAGAA----LH-------CWPSPSNAVAEISRILRSGGVFVGTTFL  276 (304)
Q Consensus       222 ~~~~~d~~~l--p~~~~~fD~V~~~~v----l~-------h~~d~~~~l~~~~r~LkpgG~lvi~~~~  276 (304)
                      .++.+|..+.  .++++++|+|+..--    ..       ++......+.++.|+|||+|.+++..-.
T Consensus         6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~   73 (279)
T d1eg2a_           6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL   73 (279)
T ss_dssp             EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCc
Confidence            4566666442  356888998888432    11       1122356789999999999999886543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=80.22  E-value=4.2  Score=32.20  Aligned_cols=76  Identities=21%  Similarity=0.238  Sum_probs=55.5

Q ss_pred             CCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC----------C
Q 021975          167 GGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------F  233 (304)
Q Consensus       167 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------~  233 (304)
                      ++.+|=-|++.|-   ....|++.|.  +|+.+|.+++.++...+.++..+    .++.++.+|+.+..          -
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g----~~~~~~~~Dvs~~~~v~~~~~~~~~   75 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG----VEADGRTCDVRSVPEIEALVAAVVE   75 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEeecCCHHHHHHHHHHHHH
Confidence            4566777876653   4566667776  99999999999988888887655    67899999997742          0


Q ss_pred             CCCccceEEecchhc
Q 021975          234 ASGFVDAVHAGAALH  248 (304)
Q Consensus       234 ~~~~fD~V~~~~vl~  248 (304)
                      .-+..|+++.+..+.
T Consensus        76 ~~g~iDilVnnAG~~   90 (257)
T d2rhca1          76 RYGPVDVLVNNAGRP   90 (257)
T ss_dssp             HTCSCSEEEECCCCC
T ss_pred             HhCCCCEEEeccccc
Confidence            125789999865543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=80.14  E-value=2.2  Score=33.94  Aligned_cols=98  Identities=21%  Similarity=0.210  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCccH---HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCccCCCCeEEEEccCCCCC-----C----
Q 021975          166 QGGLLVDVSCGSGL---FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F----  233 (304)
Q Consensus       166 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~----  233 (304)
                      +++++|=-|++.|-   ....|++.|.  +|+..|.+++..+.+++          .+..++.+|+.+..     +    
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~~~   71 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEA----------IGGAFFQVDLEDERERVRFVEEAA   71 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHH----------HTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHH----------cCCeEEEEeCCCHHHHHHHHHHHH
Confidence            47889988877663   4566667776  99999999877665544          23467888987742     0    


Q ss_pred             -CCCccceEEecchhccCC-----CHH--------------HHHHHHHHhccc--CcEEEEEEe
Q 021975          234 -ASGFVDAVHAGAALHCWP-----SPS--------------NAVAEISRILRS--GGVFVGTTF  275 (304)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~-----d~~--------------~~l~~~~r~Lkp--gG~lvi~~~  275 (304)
                       .-+..|+++.+..+.+..     +.+              .+.+.+.+.|+.  +|.++....
T Consensus        72 ~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS  135 (248)
T d2d1ya1          72 YALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVAS  135 (248)
T ss_dssp             HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             HhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccc
Confidence             015789988765433221     111              245666677754  577766553