Citrus Sinensis ID: 022005

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
Protein Sequence
MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTSI
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccccEEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEcccHHcccccccccccccEEEccccEEcccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHcccEEHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHcccccEEEcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHcccHHcEEEEcccccccHHHHHHHHHccccEEEEEccccccEHEEEEHHHHEEccccccccccEEEEccccccccccccccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
maveysccgmgFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLaksgtpkdrkhaaKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGeiipqsvcsryglaigstvaPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLhgneagkggelthDETTIIAGALELTEktasdamtpiAETFAIDINAKLDKELMNLILEkghsrvpvyyeeptnIIGLILVKnlltihpedevpvksvtirriPRYLISLGKCSCALFRSLSLFSTSI
Flexible Loop (DISEMBL)
MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGneagkggelthDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTihpedevpvksvtirRIPRylislgkcscalfrslslfstsi
Low Complexity Region (SEG)
MAVEYSCCGMGfiihivvivflvmfAglmsgltlglmsmslVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTSI
Disordered region (IsUnstruct)
**VEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSG****RKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLF****
Disordered Region (DISOPRED)
******CCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDL***************AKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGR*****RAELKTLVNL*************DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFS***
Disordered Region (DISEMBL)
MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTSI
Disordered Region (DISPRO)
*****SCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTSI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	304	2.2.26 [Sep-21-2011]
Q9ZQR4	423	DUF21 domain-containing p	yes	no	0.924	0.664	0.871	1e-142
Q8VZI2	424	DUF21 domain-containing p	no	no	0.924	0.662	0.850	1e-138
Q8RY60	527	DUF21 domain-containing p	no	no	0.924	0.533	0.637	1e-104
Q9LTD8	500	DUF21 domain-containing p	no	no	0.973	0.592	0.598	1e-102
Q67XQ0	494	DUF21 domain-containing p	no	no	0.884	0.544	0.625	7e-97
Q9ZVS8	499	Putative DUF21 domain-con	no	no	0.865	0.527	0.621	5e-93
Q4V3C7	495	DUF21 domain-containing p	no	no	0.884	0.543	0.596	8e-93
Q12296	706	Protein MAM3 OS=Saccharom	yes	no	0.871	0.375	0.4	2e-50
Q9USJ3	679	Uncharacterized protein C	yes	no	0.881	0.394	0.369	5e-49
A0JPA0	769	Metal transporter CNNM4 O	yes	no	0.848	0.335	0.372	5e-47

>sp|Q9ZQR4|Y2452_ARATH DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2

 Score =  504 bits (1297), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/281 (87%), Positives = 266/281 (94%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CCG  F IHI VIV LV+FAGLMSGLTLGLMSMSLVDLEVLAKSGTP+DR HAA
Sbjct: 1   MAVEYECCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAA 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLLCTLLICNAAAMEALPIFLD LV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SR+GLAIG+TVAPFVRVLVWIC PVA+PISKLLD LLGHGRVALFRRAELKTLV+LHGNE
Sbjct: 121 SRHGLAIGATVAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALEL+EK A DAMTPI++TF IDINAKLD++LMNLIL+KGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSR 240

Query: 241 VPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
           VPVYYE+ TNIIGL+LVKNLLTI+P++E+ VK+VTIRRIPR
Sbjct: 241 VPVYYEQRTNIIGLVLVKNLLTINPDEEIQVKNVTIRRIPR 281

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZI2|Y4370_ARATH DUF21 domain-containing protein At4g33700 OS=Arabidopsis thaliana GN=CBSDUF6 PE=1 SV=1

 Score =  489 bits (1260), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/281 (85%), Positives = 262/281 (93%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CC   F IHI VIVFLV+FAGLMSGLTLGLMS+SLVDLEVLAKSGTP+ RK+AA
Sbjct: 1   MAVEYVCCSPNFFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAA 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLL TLLICNAAAME LPIFLDGLV+AWGAILISVTLILLFGEIIPQS+C
Sbjct: 61  KILPVVKNQHLLLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSIC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SRYGLAIG+TVAPFVRVLV+IC PVA+PISKLLD LLGH R ALFRRAELKTLV+ HGNE
Sbjct: 121 SRYGLAIGATVAPFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALEL+EK   DAMTPI++ F IDINAKLD++LMNLILEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSR 240

Query: 241 VPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
           VPVYYE+PTNIIGL+LVKNLLTI+P++E+PVK+VTIRRIPR
Sbjct: 241 VPVYYEQPTNIIGLVLVKNLLTINPDEEIPVKNVTIRRIPR 281

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RY60|Y1733_ARATH DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1

 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/281 (63%), Positives = 229/281 (81%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           M+ +  CCG  F +++V+I+ LV FAGLM+GLTLGLMS+ LVDLEVL KSG P+DR +A 
Sbjct: 1   MSSDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAG 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KI PVV+NQHLLLCTLLI N+ AMEALPIFLD +V  W AIL+SVTLIL+FGEI+PQ+VC
Sbjct: 61  KIFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           +RYGL +G+ +APFVRVL+ + +P+++PISK+LD +LG G   L RRAELKT VN HGNE
Sbjct: 121 TRYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGG+LT DET+II GALELTEKTA DAMTPI+  F+++++  L+ E +N I+  GHSR
Sbjct: 181 AGKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSR 240

Query: 241 VPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
           VPVY+  PT+IIGLILVKNLL +    EVP++ +++R+IPR
Sbjct: 241 VPVYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPR 281

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTD8|Y5279_ARATH DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana GN=CBSDUF5 PE=2 SV=2

 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/301 (59%), Positives = 239/301 (79%), Gaps = 5/301 (1%)

Query: 2   AVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAK 61
           A +  CC   F ++++V V LV+FAGLMSGLTLGLMS+S+V+LEV+ K+G P DRK+A K
Sbjct: 3   ANDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNAEK 62

Query: 62  ILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCS 121
           ILP+V+NQHLLLCTLLI NA AMEALPIF+D L+ AWGAILISVTLIL FGEIIPQ+VCS
Sbjct: 63  ILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAVCS 122

Query: 122 RYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEA 181
           RYGL+IG+ ++  VR+++ + +P+++PISKLLD+LLG     L  RAELK+LV +HGNEA
Sbjct: 123 RYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNEA 182

Query: 182 GKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRV 241
           GKGGELTHDETTII+GAL++++K+A DAMTP+++ F++DIN KLD++ M LI   GHSR+
Sbjct: 183 GKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSRI 242

Query: 242 PVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFS 301
           P+Y   P  IIG ILVKNL+ + PEDE  ++ + IRR+P+  ++L      L+  L++F 
Sbjct: 243 PIYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNL-----PLYDILNIFQ 297

Query: 302 T 302
           T
Sbjct: 298 T 298

Arabidopsis thaliana (taxid: 3702)

>sp|Q67XQ0|Y4424_ARATH DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=2 SV=1

 Score =  353 bits (907), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 169/270 (62%), Positives = 217/270 (80%), Gaps = 1/270 (0%)

Query: 12  FIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHL 71
           +I +  +  FLV+FAG+MSGLTLGLMS+ LV+LE+L +SGTP ++K AA I PVV+ QH 
Sbjct: 35  WITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPNEKKQAAAIFPVVQKQHQ 94

Query: 72  LLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTV 131
           LL TLL+CNA AME LPI+LD L + + AI++SVT +L FGE+IPQ++C+RYGLA+G+  
Sbjct: 95  LLVTLLLCNAMAMEGLPIYLDKLFNEYVAIILSVTFVLAFGEVIPQAICTRYGLAVGANF 154

Query: 132 APFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDE 191
              VR+L+ +CYP+AFPI K+LD++LGH   ALFRRA+LK LV++H  EAGKGGELTHDE
Sbjct: 155 VWLVRILMTLCYPIAFPIGKILDLVLGHND-ALFRRAQLKALVSIHSQEAGKGGELTHDE 213

Query: 192 TTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNI 251
           TTII+GAL+LTEKTA +AMTPI  TF++D+N+KLD E M  IL +GHSRVPVY   P N+
Sbjct: 214 TTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNV 273

Query: 252 IGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
           IGL+LVK+LLT+ PE E  V +V IRRIPR
Sbjct: 274 IGLLLVKSLLTVRPETETLVSAVCIRRIPR 303

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVS8|Y1327_ARATH Putative DUF21 domain-containing protein At1g03270 OS=Arabidopsis thaliana GN=CBSDUF4 PE=4 SV=2

 Score =  341 bits (874), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 164/264 (62%), Positives = 211/264 (79%), Gaps = 1/264 (0%)

Query: 18  VIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLL 77
           V  FLV+FAG+MSGLTLGLMS+ LV+LE+L +SG+  ++K AA ILPVV+ QH LL TLL
Sbjct: 39  VACFLVLFAGIMSGLTLGLMSLGLVELEILQQSGSSAEKKQAAAILPVVKKQHQLLVTLL 98

Query: 78  ICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRV 137
           +CNAAAMEALPI LD +   + A+L+SVT +L FGEIIPQ++CSRYGLA+G+     VR+
Sbjct: 99  LCNAAAMEALPICLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFLWLVRI 158

Query: 138 LVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAG 197
           L+ ICYP+A+PI K+LD ++GH    LFRRA+LK LV++H  EAGKGGELTH+ET II+G
Sbjct: 159 LMIICYPIAYPIGKVLDAVIGHNDT-LFRRAQLKALVSIHSQEAGKGGELTHEETMIISG 217

Query: 198 ALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257
           AL+L++KTA +AMTPI  TF++D+N KLD E +  IL +GHSR+PVY   P NIIGL+LV
Sbjct: 218 ALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRIPVYLGNPKNIIGLLLV 277

Query: 258 KNLLTIHPEDEVPVKSVTIRRIPR 281
           K+LLT+  E E PV SV+IR+IPR
Sbjct: 278 KSLLTVRAETEAPVSSVSIRKIPR 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q4V3C7|Y4423_ARATH DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1

 Score =  340 bits (872), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 161/270 (59%), Positives = 216/270 (80%), Gaps = 1/270 (0%)

Query: 12  FIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHL 71
           +I +  +  FLV+FAG+MSGLTLGLMS+ LV+LE+L +SGTPK++K +A I PVV+ QH 
Sbjct: 34  WITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPKEKKQSAAIFPVVQKQHQ 93

Query: 72  LLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTV 131
           LL TLL+ NA AME LPI+LD + + + AI++SVT +L  GE+IPQ++C+RYGLA+G+ +
Sbjct: 94  LLVTLLLFNALAMEGLPIYLDKIFNEYVAIILSVTFVLFVGEVIPQAICTRYGLAVGANL 153

Query: 132 APFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDE 191
              VR+L+ + YP++FPI+K+LD +LGH    LFRRA+LK LV++HG  AGKGGELTHDE
Sbjct: 154 VWLVRILMVLSYPISFPIAKMLDWVLGHND-PLFRRAQLKALVSIHGEAAGKGGELTHDE 212

Query: 192 TTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNI 251
           TTII+GAL+LTEKTA +AMTPI  TF++D+N+KLD+E M+ I  +GHSRVPVY + P N+
Sbjct: 213 TTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDREAMDKIQARGHSRVPVYSDNPKNV 272

Query: 252 IGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
           IGL+LVK+LLT+ PE    V +V IRRIPR
Sbjct: 273 IGLLLVKSLLTVRPETGTLVSAVGIRRIPR 302

Arabidopsis thaliana (taxid: 3702)

>sp|Q12296|MAM3_YEAST Protein MAM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM3 PE=1 SV=1

 Score =  199 bits (506), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/270 (40%), Positives = 167/270 (61%), Gaps = 5/270 (1%)

Query: 15  HIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVV-RNQHLLL 73
           + ++ + LV+  G+ +GLTLGLM    V L+V++ SG+  ++K A ++L ++ R +H +L
Sbjct: 64  YYIISIILVLLGGVFAGLTLGLMGQDEVYLKVISTSGSNSEKKLAKRVLDLISRGKHWVL 123

Query: 74  CTLLICNAAAMEALPIFLDG-LVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVA 132
            TLL+ N    E LPI LD  L   W A++ S  LI++FGEIIPQSVC +YGL +G+   
Sbjct: 124 VTLLLSNVITNETLPIVLDRCLGGGWQAVVSSTILIVIFGEIIPQSVCVKYGLQVGAFFC 183

Query: 133 PFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDET 192
           PFV VL+++ YPVA+PI+ LLD +LG     +++++ LKTLV LH     +   LT DE 
Sbjct: 184 PFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMGVE--RLTKDEV 241

Query: 193 TIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYY-EEPTNI 251
           TII+  L+L  K   + MTPI   F +  +  LD + +  I   G SR+P++   EP N 
Sbjct: 242 TIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLPNEPNNF 301

Query: 252 IGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
           IG++LV+ L++  P+D +P+    +  +P 
Sbjct: 302 IGMLLVRVLISYDPDDCLPISHFPLATLPE 331

Involved in metal homeostasis and more specially in manganese sensitivity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9USJ3|YJ23_SCHPO Uncharacterized protein C4B3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.03c PE=1 SV=1

 Score =  194 bits (494), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 101/273 (36%), Positives = 170/273 (62%), Gaps = 5/273 (1%)

Query: 12  FIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRN-QH 70
           + + +++   L++  G+ +GLT+GLM    + L+VL +SG   +R HA K+L ++R  +H
Sbjct: 62  YWMKLIISAVLILLGGVFAGLTIGLMGCDDLHLQVLEQSGDASERVHARKVLKLLRRGKH 121

Query: 71  LLLCTLLICNAAAMEALPIFLDGLVSA-WGAILISVTLILLFGEIIPQSVCSRYGLAIGS 129
            +L TLL+ N    E LPI  D ++   W A+LIS  +I++FGE+IPQ+ C RYGL+IG+
Sbjct: 122 WVLVTLLLGNVIVNETLPIVFDSIIGGGWPAVLISTAMIVIFGEVIPQATCVRYGLSIGA 181

Query: 130 TVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTH 189
            + P V  ++++ +P+A+P + +LD  LG  +  +++++ LKTLV LH +      +L  
Sbjct: 182 KLEPIVLFMMYLLWPIAYPTALILDACLGESQSTMYKKSGLKTLVTLHRDLGID--KLNQ 239

Query: 190 DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE-P 248
           DE TII   L+L EK A   MTPI + F + ++  LD++L+  I+  G+SR+PV+    P
Sbjct: 240 DEVTIITAVLDLREKHAESIMTPIEDVFTLPMDRILDEDLIGEIICAGYSRIPVHKPGFP 299

Query: 249 TNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
            + IG++L K L+   P+D+ PV    +  +P+
Sbjct: 300 HDFIGMLLTKTLIGYDPDDKWPVGKFALATLPQ 332

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A0JPA0|CNNM4_XENTR Metal transporter CNNM4 OS=Xenopus tropicalis GN=cnnm4 PE=2 SV=1

 Score =  188 bits (477), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 98/263 (37%), Positives = 162/263 (61%), Gaps = 5/263 (1%)

Query: 14  IHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLL 73
           +   +I  L+  +G+ SGL LGLM++  ++L V+ + GT K++++A+KI PV R  + LL
Sbjct: 181 LQACIIAVLLTLSGIFSGLNLGLMALDPMELRVVQRCGTEKEKRYASKIEPVRRKGNYLL 240

Query: 74  CTLLICNAAAMEALPIFLDGLV-SAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVA 132
           C+LL+ N      L   LD L+ S   A+L S T I++ GEI+PQ++CSR+GLA+G+   
Sbjct: 241 CSLLLGNVLVNTTLTALLDELIGSGLAAVLASTTGIVVLGEIVPQALCSRHGLAVGANTL 300

Query: 133 PFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDET 192
              R+ + + +PVA+P+S+LLD  LG     ++ R +L  ++ +    +G    +  +E 
Sbjct: 301 WLTRIFMLLTFPVAYPVSRLLDCALGQEIGTVYNREKLLEMLKVTEPYSG----IVREEM 356

Query: 193 TIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNII 252
            II GALEL  KT  D MT + + F +  +A LD   M+ I+E G++R+PVY  E +NI+
Sbjct: 357 NIIQGALELRTKTVEDVMTKVEDCFMLPSDAVLDFNTMSSIMESGYTRIPVYENERSNIV 416

Query: 253 GLILVKNLLTIHPEDEVPVKSVT 275
            ++ VK+L  + P+D  P+ ++T
Sbjct: 417 DILYVKDLAFVDPDDCTPLSTIT 439

Probable metal transporter.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
449438283	425	PREDICTED: DUF21 domain-containing prote	0.924	0.661	0.914	1e-147
255562092	425	conserved hypothetical protein [Ricinus	0.924	0.661	0.914	1e-146
224056311	432	predicted protein [Populus trichocarpa]	0.940	0.662	0.881	1e-144
359475517	430	PREDICTED: DUF21 domain-containing prote	0.924	0.653	0.886	1e-144
357476069	425	Metal transporter CNNM4 [Medicago trunca	0.924	0.661	0.889	1e-143
356524776	425	PREDICTED: DUF21 domain-containing prote	0.924	0.661	0.871	1e-142
42569036	423	CBS and transporter associated domain-co	0.924	0.664	0.871	1e-140
224103813	430	predicted protein [Populus trichocarpa]	0.924	0.653	0.868	1e-139
356521267	425	PREDICTED: DUF21 domain-containing prote	0.924	0.661	0.882	1e-137
449478800	425	PREDICTED: LOW QUALITY PROTEIN: DUF21 do	0.914	0.654	0.873	1e-137

>gi|449438283|ref|XP_004136918.1| PREDICTED: DUF21 domain-containing protein At2g14520-like [Cucumis sativus]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 257/281 (91%), Positives = 270/281 (96%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CC   F IHI++IV LV+FAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDR HAA
Sbjct: 1   MAVEYECCTPNFFIHILIIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRIHAA 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLLCTLLICNAAAMEALPIFLD LV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMEALPIFLDSLVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SRYGLAIG+TVAPFVRVLVWIC+PVA+PISKLLD LLGHGRVALFRRAELKTLVNLHGNE
Sbjct: 121 SRYGLAIGATVAPFVRVLVWICFPVAYPISKLLDFLLGHGRVALFRRAELKTLVNLHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALEL+EKTA DAMTPI+ETFAIDINAKLD+ LMNL+LEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKTAGDAMTPISETFAIDINAKLDRNLMNLVLEKGHSR 240

Query: 241 VPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
           VPVYYEEPTNIIGLILVKNLLTIHP+DEVPVKSVTIRRIPR
Sbjct: 241 VPVYYEEPTNIIGLILVKNLLTIHPDDEVPVKSVTIRRIPR 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562092|ref|XP_002522054.1| conserved hypothetical protein [Ricinus communis] gi|223538653|gb|EEF40254.1| conserved hypothetical protein [Ricinus communis]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 257/281 (91%), Positives = 270/281 (96%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CC   F IHIVVIVFLV+FAGLMSGLTLGLMSMS+VDLEVLA+SGTPKDRKHAA
Sbjct: 1   MAVEYKCCETEFFIHIVVIVFLVLFAGLMSGLTLGLMSMSIVDLEVLAQSGTPKDRKHAA 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVVRNQHLLLCTLLICNAAAME LPIFLDGLV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVRNQHLLLCTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SR+GLAIG+TVAP VR+LVWIC+PVA+PISKLLD LLGHG VALFRRAELKTLVN HGNE
Sbjct: 121 SRHGLAIGATVAPVVRILVWICFPVAYPISKLLDYLLGHGHVALFRRAELKTLVNFHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALELTEKTASDAMTPI+ETFAIDINAKLDKELM+LILEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPISETFAIDINAKLDKELMSLILEKGHSR 240

Query: 241 VPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
           VPVYYE+PTNIIGLILVKNLLTIHPEDEVPVK+VTIRRI R
Sbjct: 241 VPVYYEQPTNIIGLILVKNLLTIHPEDEVPVKNVTIRRIWR 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056311|ref|XP_002298798.1| predicted protein [Populus trichocarpa] gi|222846056|gb|EEE83603.1| predicted protein [Populus trichocarpa]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 252/286 (88%), Positives = 270/286 (94%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           M VEYSCC   F IHI++IVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDR +AA
Sbjct: 1   MTVEYSCCETNFFIHILIIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRIYAA 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLLCTLLICNAAAME LPIFLD LV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMETLPIFLDSLVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           +RYGLAIG+TV PFVRVLVWIC+PVA+PISKLLD +LGHG VALFRRAELKTLVN HGNE
Sbjct: 121 TRYGLAIGATVTPFVRVLVWICFPVAYPISKLLDYMLGHGHVALFRRAELKTLVNFHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALELTEKTASDAMTPI+ETFAID+NAKLD+ELM+LILEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPISETFAIDVNAKLDRELMSLILEKGHSR 240

Query: 241 VPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISL 286
           VPVYYE+ TNIIGLIL KNLLTIHPED+VPVK+VTIRRIPR L +L
Sbjct: 241 VPVYYEQSTNIIGLILAKNLLTIHPEDKVPVKNVTIRRIPRVLETL 286

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475517|ref|XP_002272975.2| PREDICTED: DUF21 domain-containing protein At2g14520-like [Vitis vinifera] gi|147815300|emb|CAN61244.1| hypothetical protein VITISV_016135 [Vitis vinifera]

 Score =  515 bits (1326), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/281 (88%), Positives = 268/281 (95%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CC   F IHI++IV LV+FAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHA 
Sbjct: 1   MAVEYRCCEAEFFIHILIIVGLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAE 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+ QHLLLCTLLI NAAAMEALPIFLDGL++AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVKKQHLLLCTLLIFNAAAMEALPIFLDGLITAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SRYGLAIG+TVAP VR+LVWICYPVA+PISKLLD LLGHG VALFRRAELKTLV+ HGNE
Sbjct: 121 SRYGLAIGATVAPVVRILVWICYPVAYPISKLLDFLLGHGHVALFRRAELKTLVDFHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALEL+EKTASDAM+PI++TFAIDINAKLD++LMNLILEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKTASDAMSPISDTFAIDINAKLDRDLMNLILEKGHSR 240

Query: 241 VPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
           VPVYYE+PTNIIGLILVKNLLTIHPEDE+PVK+VTIRRIPR
Sbjct: 241 VPVYYEQPTNIIGLILVKNLLTIHPEDEIPVKNVTIRRIPR 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476069|ref|XP_003608320.1| Metal transporter CNNM4 [Medicago truncatula] gi|355509375|gb|AES90517.1| Metal transporter CNNM4 [Medicago truncatula]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/281 (88%), Positives = 265/281 (94%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY+CC   F IHI+VI+FLV+FAGLMSGLTLGLMS+SLVDLEVLAKSGTP DRKHA 
Sbjct: 1   MAVEYTCCESEFFIHILVIIFLVVFAGLMSGLTLGLMSLSLVDLEVLAKSGTPNDRKHAV 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVVRNQHLLLCTLLICNAAAMEALPIFLD LV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDSLVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SRYGLAIG++V PFVRVLVWICYPVAFPISKLLD LLGH   ALFRRAELKTLV+LHGNE
Sbjct: 121 SRYGLAIGASVTPFVRVLVWICYPVAFPISKLLDYLLGHRNEALFRRAELKTLVDLHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALEL+EKTASDAMTPI+ETFAIDIN+KLD+ELM  ILEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKTASDAMTPISETFAIDINSKLDRELMTEILEKGHSR 240

Query: 241 VPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
           VPVYYE+ TNIIGLIL+KNLLTIHPEDE PVKSVTIRRIPR
Sbjct: 241 VPVYYEQSTNIIGLILIKNLLTIHPEDESPVKSVTIRRIPR 281

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524776|ref|XP_003531004.1| PREDICTED: DUF21 domain-containing protein At2g14520-like [Glycine max]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/281 (87%), Positives = 266/281 (94%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY+CC   F +HI+VIV LV+FAGLMSGLTLGLMS+SLVDLEVLAKSGTP+DRKHA 
Sbjct: 1   MAVEYTCCSTAFFVHILVIVLLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAE 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLLCTLLICNAAAME LPIFLDGLV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SRYGLAIG++VAPFVRVLV IC+PVA+PISKLLD LLGH   ALFRRAELKTLVNLHGNE
Sbjct: 121 SRYGLAIGASVAPFVRVLVCICFPVAYPISKLLDFLLGHRHEALFRRAELKTLVNLHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALEL+EKTASDAMTPI+ETF +DIN+KLD+ELMN ILEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKTASDAMTPISETFTVDINSKLDRELMNEILEKGHSR 240

Query: 241 VPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
           VPVYYE+PTNIIGL+LVKNLLT+HPEDE P+KSVTIRRIPR
Sbjct: 241 VPVYYEQPTNIIGLVLVKNLLTVHPEDEAPMKSVTIRRIPR 281

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569036|ref|NP_179058.3| CBS and transporter associated domain-containing protein [Arabidopsis thaliana] gi|342179473|sp|Q9ZQR4.2|Y2452_ARATH RecName: Full=DUF21 domain-containing protein At2g14520; AltName: Full=CBS domain-containing protein CBSDUF3 gi|330251214|gb|AEC06308.1| CBS and transporter associated domain-containing protein [Arabidopsis thaliana]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/281 (87%), Positives = 266/281 (94%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CCG  F IHI VIV LV+FAGLMSGLTLGLMSMSLVDLEVLAKSGTP+DR HAA
Sbjct: 1   MAVEYECCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAA 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLLCTLLICNAAAMEALPIFLD LV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SR+GLAIG+TVAPFVRVLVWIC PVA+PISKLLD LLGHGRVALFRRAELKTLV+LHGNE
Sbjct: 121 SRHGLAIGATVAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALEL+EK A DAMTPI++TF IDINAKLD++LMNLIL+KGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSR 240

Query: 241 VPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
           VPVYYE+ TNIIGL+LVKNLLTI+P++E+ VK+VTIRRIPR
Sbjct: 241 VPVYYEQRTNIIGLVLVKNLLTINPDEEIQVKNVTIRRIPR 281

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103813|ref|XP_002313203.1| predicted protein [Populus trichocarpa] gi|222849611|gb|EEE87158.1| predicted protein [Populus trichocarpa]

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/281 (86%), Positives = 265/281 (94%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CC   F ++IV+IV LV+FAGLMSGLTLGLMSMS+VDLEVLAKSGTPK+RK+AA
Sbjct: 1   MAVEYKCCETDFFVNIVIIVLLVLFAGLMSGLTLGLMSMSIVDLEVLAKSGTPKNRKYAA 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLLCTLLICNA AMEALPIFLD LV+A  AI+ISVTLILLFGEI+PQSVC
Sbjct: 61  KILPVVKNQHLLLCTLLICNATAMEALPIFLDSLVTAGVAIVISVTLILLFGEILPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SRYGLAIG+TVAPFVR+LVWIC+PVA+PISKLLD LLGHG VALFRRAELKTLVN HGNE
Sbjct: 121 SRYGLAIGATVAPFVRLLVWICFPVAYPISKLLDFLLGHGHVALFRRAELKTLVNFHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALELTEKTASDAMTPI+ETFAIDIN KLD+ELM+LILEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPISETFAIDINDKLDRELMSLILEKGHSR 240

Query: 241 VPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
           VPVYYE+PTNIIGLIL  NLLTIHPED+VPVK+VTIRRIPR
Sbjct: 241 VPVYYEQPTNIIGLILANNLLTIHPEDKVPVKNVTIRRIPR 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521267|ref|XP_003529278.1| PREDICTED: DUF21 domain-containing protein At2g14520-like [Glycine max]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 248/281 (88%), Positives = 266/281 (94%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY+CC   F +HIVVIV LV+FAGLMSGLTLGLMS+SLVDLEVLAKSGTP+DRKHA 
Sbjct: 1   MAVEYTCCSTAFFVHIVVIVLLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAE 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLLCTLLICNAAAME LPIFLDGLV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SRYGLAIG++VAPFVRVLV IC+PVAFPISKLLD LLGH   ALFRRAELKTLVNLHGNE
Sbjct: 121 SRYGLAIGASVAPFVRVLVCICFPVAFPISKLLDFLLGHRHEALFRRAELKTLVNLHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALEL+EKTASDAMTPI+ETF +DIN+KLD+ELMN ILEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKTASDAMTPISETFTVDINSKLDRELMNEILEKGHSR 240

Query: 241 VPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
           VPVYYE+PTNIIGL+LVKNLLT+HPEDE PVKSVTIRRIPR
Sbjct: 241 VPVYYEQPTNIIGLVLVKNLLTVHPEDEAPVKSVTIRRIPR 281

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478800|ref|XP_004155421.1| PREDICTED: LOW QUALITY PROTEIN: DUF21 domain-containing protein At2g14520-like [Cucumis sativus]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 248/284 (87%), Positives = 261/284 (91%), Gaps = 6/284 (2%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CC   F IHI++IV LV+FAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDR HAA
Sbjct: 1   MAVEYECCTPNFFIHILIIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRIHAA 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLLCTLLICNAAAMEALPIFLD LV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMEALPIFLDSLVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SRYGLAIG+TVAPFVRVLVWIC+PVA+PISKLLD LLGHGRVALFRRAELKTLVNLHG  
Sbjct: 121 SRYGLAIGATVAPFVRVLVWICFPVAYPISKLLDFLLGHGRVALFRRAELKTLVNLHG-- 178

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDK---ELMNLILEKG 237
             KGGELTHDETTIIAGALEL+EKTA DAMTPI+ETFAIDINAKLD+   E      +KG
Sbjct: 179 -WKGGELTHDETTIIAGALELSEKTAGDAMTPISETFAIDINAKLDRXFHEFDESCSQKG 237

Query: 238 HSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
           HSRVPVYYEEPTNIIGLILVKNLLTIHP+DEVPVKSVTIRRIPR
Sbjct: 238 HSRVPVYYEEPTNIIGLILVKNLLTIHPDDEVPVKSVTIRRIPR 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
TAIR|locus:2055155	423	AT2G14520 "AT2G14520" [Arabido	0.924	0.664	0.782	1.4e-112
TAIR|locus:2134273	424	AT4G33700 "AT4G33700" [Arabido	0.924	0.662	0.761	7e-109
TAIR|locus:2203746	527	AT1G47330 "AT1G47330" [Arabido	0.924	0.533	0.572	9.4e-82
TAIR|locus:2149659	500	AT5G52790 "AT5G52790" [Arabido	0.842	0.512	0.601	8.5e-81
TAIR|locus:2129540	494	AT4G14240 "AT4G14240" [Arabido	0.786	0.483	0.629	1.6e-79
TAIR|locus:2014520	499	AT1G03270 "AT1G03270" [Arabido	0.786	0.478	0.608	3.9e-76
TAIR|locus:2129535	495	AT4G14230 "AT4G14230" [Arabido	0.786	0.482	0.595	3.5e-75
ASPGD|ASPL0000049101	716	AN1876 [Emericella nidulans (t	0.786	0.333	0.448	2e-49
CGD|CAL0000380	780	orf19.6979 [Candida albicans (	0.779	0.303	0.442	2.3e-48
UNIPROTKB|Q59YU4	780	CaO19.6979 "Putative uncharact	0.779	0.303	0.442	2.3e-48

TAIR|locus:2055155 AT2G14520 "AT2G14520" [Arabidopsis thaliana (taxid:3702)]

 Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
 Identities = 220/281 (78%), Positives = 240/281 (85%)

Query:     1 MAVEYSCCGMGXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXVDLEVLAKSGTPKDRKHAA 60
             MAVEY CCG                A               VDLEVLAKSGTP+DR HAA
Sbjct:     1 MAVEYECCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAA 60

Query:    61 KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
             KILPVV+NQHLLLCTLLICNAAAMEALPIFLD LV+AWGAILISVTLILLFGEIIPQSVC
Sbjct:    61 KILPVVKNQHLLLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVC 120

Query:   121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
             SR+GLAIG+TVAPFVRVLVWIC PVA+PISKLLD LLGHGRVALFRRAELKTLV+LHGNE
Sbjct:   121 SRHGLAIGATVAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNE 180

Query:   181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
             AGKGGELTHDETTIIAGALEL+EK A DAMTPI++TF IDINAKLD++LMNLIL+KGHSR
Sbjct:   181 AGKGGELTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSR 240

Query:   241 VPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
             VPVYYE+ TNIIGL+LVKNLLTI+P++E+ VK+VTIRRIPR
Sbjct:   241 VPVYYEQRTNIIGLVLVKNLLTINPDEEIQVKNVTIRRIPR 281

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134273 AT4G33700 "AT4G33700" [Arabidopsis thaliana (taxid:3702)]

 Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
 Identities = 214/281 (76%), Positives = 235/281 (83%)

Query:     1 MAVEYSCCGMGXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXVDLEVLAKSGTPKDRKHAA 60
             MAVEY CC                 A               VDLEVLAKSGTP+ RK+AA
Sbjct:     1 MAVEYVCCSPNFFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAA 60

Query:    61 KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
             KILPVV+NQHLLL TLLICNAAAME LPIFLDGLV+AWGAILISVTLILLFGEIIPQS+C
Sbjct:    61 KILPVVKNQHLLLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSIC 120

Query:   121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
             SRYGLAIG+TVAPFVRVLV+IC PVA+PISKLLD LLGH R ALFRRAELKTLV+ HGNE
Sbjct:   121 SRYGLAIGATVAPFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNE 180

Query:   181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
             AGKGGELTHDETTIIAGALEL+EK   DAMTPI++ F IDINAKLD++LMNLILEKGHSR
Sbjct:   181 AGKGGELTHDETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSR 240

Query:   241 VPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
             VPVYYE+PTNIIGL+LVKNLLTI+P++E+PVK+VTIRRIPR
Sbjct:   241 VPVYYEQPTNIIGLVLVKNLLTINPDEEIPVKNVTIRRIPR 281

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2203746 AT1G47330 "AT1G47330" [Arabidopsis thaliana (taxid:3702)]

 Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
 Identities = 161/281 (57%), Positives = 204/281 (72%)

Query:     1 MAVEYSCCGMGXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXVDLEVLAKSGTPKDRKHAA 60
             M+ +  CCG                A               VDLEVL KSG P+DR +A 
Sbjct:     1 MSSDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAG 60

Query:    61 KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
             KI PVV+NQHLLLCTLLI N+ AMEALPIFLD +V  W AIL+SVTLIL+FGEI+PQ+VC
Sbjct:    61 KIFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVC 120

Query:   121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
             +RYGL +G+ +APFVRVL+ + +P+++PISK+LD +LG G   L RRAELKT VN HGNE
Sbjct:   121 TRYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNE 180

Query:   181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
             AGKGG+LT DET+II GALELTEKTA DAMTPI+  F+++++  L+ E +N I+  GHSR
Sbjct:   181 AGKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSR 240

Query:   241 VPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
             VPVY+  PT+IIGLILVKNLL +    EVP++ +++R+IPR
Sbjct:   241 VPVYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPR 281

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2149659 AT5G52790 "AT5G52790" [Arabidopsis thaliana (taxid:3702)]

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 157/261 (60%), Positives = 208/261 (79%)

Query:    42 VDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAI 101
             V+LEV+ K+G P DRK+A KILP+V+NQHLLLCTLLI NA AMEALPIF+D L+ AWGAI
Sbjct:    43 VELEVMIKAGEPHDRKNAEKILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAI 102

Query:   102 LISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGR 161
             LISVTLIL FGEIIPQ+VCSRYGL+IG+ ++  VR+++ + +P+++PISKLLD+LLG   
Sbjct:   103 LISVTLILAFGEIIPQAVCSRYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRH 162

Query:   162 VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDI 221
               L  RAELK+LV +HGNEAGKGGELTHDETTII+GAL++++K+A DAMTP+++ F++DI
Sbjct:   163 STLLGRAELKSLVYMHGNEAGKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDI 222

Query:   222 NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
             N KLD++ M LI   GHSR+P+Y   P  IIG ILVKNL+ + PEDE  ++ + IRR+P+
Sbjct:   223 NFKLDEKTMGLIASAGHSRIPIYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPK 282

Query:   282 YLISLGKCSCALFRSLSLFST 302
               ++L      L+  L++F T
Sbjct:   283 VDLNL-----PLYDILNIFQT 298

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129540 AT4G14240 "AT4G14240" [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 151/240 (62%), Positives = 193/240 (80%)

Query:    42 VDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAI 101
             V+LE+L +SGTP ++K AA I PVV+ QH LL TLL+CNA AME LPI+LD L + + AI
Sbjct:    65 VELEILQRSGTPNEKKQAAAIFPVVQKQHQLLVTLLLCNAMAMEGLPIYLDKLFNEYVAI 124

Query:   102 LISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGR 161
             ++SVT +L FGE+IPQ++C+RYGLA+G+     VR+L+ +CYP+AFPI K+LD++LGH  
Sbjct:   125 ILSVTFVLAFGEVIPQAICTRYGLAVGANFVWLVRILMTLCYPIAFPIGKILDLVLGHND 184

Query:   162 VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDI 221
              ALFRRA+LK LV++H  EAGKGGELTHDETTII+GAL+LTEKTA +AMTPI  TF++D+
Sbjct:   185 -ALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDV 243

Query:   222 NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
             N+KLD E M  IL +GHSRVPVY   P N+IGL+LVK+LLT+ PE E  V +V IRRIPR
Sbjct:   244 NSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRPETETLVSAVCIRRIPR 303

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014520 AT1G03270 "AT1G03270" [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 146/240 (60%), Positives = 190/240 (79%)

Query:    42 VDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAI 101
             V+LE+L +SG+  ++K AA ILPVV+ QH LL TLL+CNAAAMEALPI LD +   + A+
Sbjct:    63 VELEILQQSGSSAEKKQAAAILPVVKKQHQLLVTLLLCNAAAMEALPICLDKIFHPFVAV 122

Query:   102 LISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGR 161
             L+SVT +L FGEIIPQ++CSRYGLA+G+     VR+L+ ICYP+A+PI K+LD ++GH  
Sbjct:   123 LLSVTFVLAFGEIIPQAICSRYGLAVGANFLWLVRILMIICYPIAYPIGKVLDAVIGHND 182

Query:   162 VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDI 221
               LFRRA+LK LV++H  EAGKGGELTH+ET II+GAL+L++KTA +AMTPI  TF++D+
Sbjct:   183 T-LFRRAQLKALVSIHSQEAGKGGELTHEETMIISGALDLSQKTAEEAMTPIESTFSLDV 241

Query:   222 NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
             N KLD E +  IL +GHSR+PVY   P NIIGL+LVK+LLT+  E E PV SV+IR+IPR
Sbjct:   242 NTKLDWETIGKILSRGHSRIPVYLGNPKNIIGLLLVKSLLTVRAETEAPVSSVSIRKIPR 301

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129535 AT4G14230 "AT4G14230" [Arabidopsis thaliana (taxid:3702)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 143/240 (59%), Positives = 192/240 (80%)

Query:    42 VDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAI 101
             V+LE+L +SGTPK++K +A I PVV+ QH LL TLL+ NA AME LPI+LD + + + AI
Sbjct:    64 VELEILQRSGTPKEKKQSAAIFPVVQKQHQLLVTLLLFNALAMEGLPIYLDKIFNEYVAI 123

Query:   102 LISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGR 161
             ++SVT +L  GE+IPQ++C+RYGLA+G+ +   VR+L+ + YP++FPI+K+LD +LGH  
Sbjct:   124 ILSVTFVLFVGEVIPQAICTRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVLGHND 183

Query:   162 VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDI 221
               LFRRA+LK LV++HG  AGKGGELTHDETTII+GAL+LTEKTA +AMTPI  TF++D+
Sbjct:   184 -PLFRRAQLKALVSIHGEAAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDV 242

Query:   222 NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
             N+KLD+E M+ I  +GHSRVPVY + P N+IGL+LVK+LLT+ PE    V +V IRRIPR
Sbjct:   243 NSKLDREAMDKIQARGHSRVPVYSDNPKNVIGLLLVKSLLTVRPETGTLVSAVGIRRIPR 302

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

ASPGD|ASPL0000049101 AN1876 [Emericella nidulans (taxid:162425)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 109/243 (44%), Positives = 157/243 (64%)

Query:    42 VDLEVLAKSG-TPKDRKHAAKILPVV-RNQHLLLCTLLICNAAAMEALPIFLD-GLVSAW 98
             V L+V+  SG +P +RK+AA +L ++ R +H +L TLL+ N    E LPI LD  L   W
Sbjct:    91 VYLQVIQTSGDSPSERKNAASVLRLLKRGKHWVLVTLLLSNVITNETLPIILDRSLGGGW 150

Query:    99 GAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLG 158
              A+L S  LI++FGEI+PQS+C RYGL IG+ +AP V  L+++  PVA+P++KLLD LLG
Sbjct:   151 PAVLGSTVLIVIFGEIVPQSICVRYGLPIGAWMAPCVLGLMYLMAPVAWPVAKLLDRLLG 210

Query:   159 HGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFA 218
                  ++++A LKTLV LH      G +L  DE TII+  L+L EK+    MTP+ + F 
Sbjct:   211 EDHGTIYKKAGLKTLVTLHKTLGEAGEQLNSDEVTIISAVLDLKEKSVGAIMTPMEDVFT 270

Query:   219 IDINAKLDKELMNLILEKGHSRVPVYY-EEPTNIIGLILVKNLLTIHPEDEVPVKSVTIR 277
             +  +  LD+  M+LIL +G+SR+P++  E P N IG++LVK L+T  PED  PV    + 
Sbjct:   271 MSADTVLDEPTMDLILSQGYSRIPIHSPENPRNFIGMLLVKMLITYDPEDCKPVSHFALA 330

Query:   278 RIP 280
              +P
Sbjct:   331 TLP 333

GO:0030026 "cellular manganese ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0000380 orf19.6979 [Candida albicans (taxid:5476)]

 Score = 509 (184.2 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 107/242 (44%), Positives = 153/242 (63%)

Query:    42 VDLEVLAKSGTPKDRKHAAKILPVV-RNQHLLLCTLLICNAAAMEALPIFLDG-LVSAWG 99
             V L+V+A SG   +RKHA K+L ++ R +H +L TLL+ N    E LPI LD  L   W 
Sbjct:   107 VYLKVIAHSGDSTERKHAKKVLQLIGRGKHWVLVTLLLSNVITNETLPIVLDRCLGGGWP 166

Query:   100 AILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGH 159
             A++ S   I++FGEIIPQS+C RYGL +GS  APFV VL++I YPVA+P + LLD +LG 
Sbjct:   167 AVVTSTVSIVIFGEIIPQSICVRYGLQVGSLFAPFVLVLMYIMYPVAYPCAMLLDHILGE 226

Query:   160 GRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAI 219
                 +++++ LKTLV LH     +   L  DE TII+  L+L EK  S  MTP+   + +
Sbjct:   227 DHGTVYKKSGLKTLVTLHKTMGVE--RLNQDEVTIISAVLDLKEKPVSSIMTPMDRVYTM 284

Query:   220 DINAKLDKELMNLILEKGHSRVPVYY-EEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRR 278
               +A LD++ +  I   G SR+P++   EPTN IG++LV+ L++  PED +PV S  +  
Sbjct:   285 SADALLDEKTVEEIFNAGFSRIPIHLPNEPTNFIGMLLVRVLISYDPEDALPVASFPLAT 344

Query:   279 IP 280
             +P
Sbjct:   345 LP 346

GO:0003674 "molecular_function" evidence=ND

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0030026 "cellular manganese ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

UNIPROTKB|Q59YU4 CaO19.6979 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 509 (184.2 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 107/242 (44%), Positives = 153/242 (63%)

Query:    42 VDLEVLAKSGTPKDRKHAAKILPVV-RNQHLLLCTLLICNAAAMEALPIFLDG-LVSAWG 99
             V L+V+A SG   +RKHA K+L ++ R +H +L TLL+ N    E LPI LD  L   W 
Sbjct:   107 VYLKVIAHSGDSTERKHAKKVLQLIGRGKHWVLVTLLLSNVITNETLPIVLDRCLGGGWP 166

Query:   100 AILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGH 159
             A++ S   I++FGEIIPQS+C RYGL +GS  APFV VL++I YPVA+P + LLD +LG 
Sbjct:   167 AVVTSTVSIVIFGEIIPQSICVRYGLQVGSLFAPFVLVLMYIMYPVAYPCAMLLDHILGE 226

Query:   160 GRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAI 219
                 +++++ LKTLV LH     +   L  DE TII+  L+L EK  S  MTP+   + +
Sbjct:   227 DHGTVYKKSGLKTLVTLHKTMGVE--RLNQDEVTIISAVLDLKEKPVSSIMTPMDRVYTM 284

Query:   220 DINAKLDKELMNLILEKGHSRVPVYY-EEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRR 278
               +A LD++ +  I   G SR+P++   EPTN IG++LV+ L++  PED +PV S  +  
Sbjct:   285 SADALLDEKTVEEIFNAGFSRIPIHLPNEPTNFIGMLLVRVLISYDPEDALPVASFPLAT 344

Query:   279 IP 280
             +P
Sbjct:   345 LP 346

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZQR4	Y2452_ARATH	No assigned EC number	0.8718	0.9243	0.6643	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	304
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	3e-41
pfam01595	182	pfam01595, DUF21, Domain of unknown function DUF21	3e-31
COG4536	423	COG4536, CorB, Putative Mg2+ and Co2+ transporter	4e-25
TIGR03520	408	TIGR03520, GldE, gliding motility-associated prote	3e-18
COG4535	293	COG4535, CorC, Putative Mg2+ and Co2+ transporter	3e-10
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	5e-09
PRK15094	292	PRK15094, PRK15094, magnesium/cobalt efflux protei	5e-06
PRK11573	413	PRK11573, PRK11573, hypothetical protein; Provisio	9e-05

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score =  147 bits (373), Expect = 3e-41
 Identities = 73/284 (25%), Positives = 135/284 (47%), Gaps = 21/284 (7%)

Query: 13  IIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLL 72
           I+ +++I+ L+  +   S     L+S+    LE LA+ G  +    A   L ++   +  
Sbjct: 4   ILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNKR----AKAALKLIERLNRY 59

Query: 73  LCTLLICN-----------AAAMEAL--PIFLDGLVSAWGAILISVTLILLFGEIIPQSV 119
           L T+ +               A+ AL  P+     +SA  +  I   L ++FGE++P+S+
Sbjct: 60  LSTVQLGITLVSLLLGAVGEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSI 119

Query: 120 CSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHG- 178
             R    +   +AP +R    + YP+ + ++++ + +L    V       L +       
Sbjct: 120 AIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELEL 179

Query: 179 -NEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG 237
            +E+ + G L  +E  +I   L+L ++T  + MTP  +  A+D+   ++ EL+ LILE G
Sbjct: 180 VSESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESG 238

Query: 238 HSRVPVYYEEPTNIIGLILVKNLLTIHPEDE-VPVKSVTIRRIP 280
           HSR+PVY  +  NIIG++ VK+LL    + +      V +R   
Sbjct: 239 HSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPPL 282

Length = 429

>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21

 Score =  114 bits (289), Expect = 3e-31
 Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 20/190 (10%)

Query: 14  IHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLL 73
           + +++IV L++ +   S     L+S+S   LE LA+ G       A ++L ++ N   LL
Sbjct: 1   LLLLIIVLLLLLSAFFSASETALVSLSRSRLEELAEEGNKG----ARRLLKLLANPDRLL 56

Query: 74  CTLLICNAAAMEALPI--------FLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGL 125
            TLL+ N  A   L           L G +    A L+S  LIL+FGEI+P+++  R   
Sbjct: 57  ATLLLGNTLANILLGALATLAAAELLLGSLGVLLATLVSTLLILVFGEILPKTLARRNPE 116

Query: 126 AIGSTVAPFVRVLVWICYPVAFPISKLLDVLLG----HGRVALFRRAELKTLVNLHGNEA 181
            I   +AP +RVL+ + YP+ + +SKL ++LL               EL+ LV+    E 
Sbjct: 117 RIALRLAPPLRVLMKLLYPLVWLLSKLSNLLLRLFGVKPEGPAVTEEELRALVDEGEEE- 175

Query: 182 GKGGELTHDE 191
              G +  +E
Sbjct: 176 ---GVIEEEE 182

This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Treponema hyodysenteriae hemolysin C that does not contain this domain. This domain is found in the N-terminus of the proteins adjacent to two intracellular CBS domains pfam00571. Length = 182

>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

 Score =  103 bits (260), Expect = 4e-25
 Identities = 71/280 (25%), Positives = 128/280 (45%), Gaps = 24/280 (8%)

Query: 14  IHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLL 73
           I I+ I+ L++ +   SG    L +++   L  LAK G     + A ++  ++     L+
Sbjct: 4   ILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGN----RGAKRVEKLLEKPDRLI 59

Query: 74  CTLLICNAAAMEALP----IFLDGLVSAWG---AILISVTLILLFGEIIPQSVCSRYGLA 126
            T+LI N            I    L    G   A  +   +IL+F E++P+++ + Y   
Sbjct: 60  GTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPER 119

Query: 127 IGSTVAPFVRVLVWICYPVAFPISKLLDVLL-------GHGRVALFRRAELKTLVNLHGN 179
           +    +  + +LV +  P+ + ++ +   LL             L  + EL+T VN  G+
Sbjct: 120 VALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVNESGS 179

Query: 180 EAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHS 239
           E    G +   +  ++ G L+L   T SD M P  E   IDI+    +E++  +L   H+
Sbjct: 180 E----GSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPW-EEIVRQLLHSPHT 234

Query: 240 RVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRI 279
           R+P+Y ++  NIIG++ V++LL +  E     K   I R 
Sbjct: 235 RIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTK-EDILRA 273

Length = 423

>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE

 Score = 83.6 bits (207), Expect = 3e-18
 Identities = 64/259 (24%), Positives = 117/259 (45%), Gaps = 28/259 (10%)

Query: 19  IVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKD----------RKHAAKILPVVRN 68
            + L++ + L+SG  +   S+S  DL    +  + K+          +K  A IL  + N
Sbjct: 1   FILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSKKEQIVINLLDRPKKLLATIL--IAN 58

Query: 69  QHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIG 128
             + +  +L+  + +      F   L+     ++I   LILLFGEI+P+   +R  L   
Sbjct: 59  NFINIAIVLLFTSLSDNLFGSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFA 118

Query: 129 STVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELT 188
             +A  + +L  +  P++ P+  + + +  H +         K   N+  ++  +  ELT
Sbjct: 119 KFMAYPINILDKVFSPISLPLRAITNFI--HKKFG-------KQKSNISVDQLSQALELT 169

Query: 189 ------HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVP 242
                  +E  I+ G +          M P  + FA+DI      E++  I+E G+SR+P
Sbjct: 170 DEEDTTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSF-SEIIPKIIENGYSRIP 228

Query: 243 VYYEEPTNIIGLILVKNLL 261
           VY E   NI G++ +K+LL
Sbjct: 229 VYKETIDNITGVLYIKDLL 247

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. Length = 408

>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 5/104 (4%)

Query: 167 RAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226
           R EL  L+     ++ +   +  D   ++ G +++ +    D M P ++   +  N  LD
Sbjct: 34  REELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD 89

Query: 227 KELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVP 270
            E +++I+E  HSR PV  E+  ++ G++L K+LL     D  P
Sbjct: 90  -ECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEP 132

Length = 293

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 52.9 bits (128), Expect = 5e-09
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 217 FAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTI 276
            A+D +  L+ E++ LI E GHSR PVY  +  NIIG++ VK+LL    E E  +    +
Sbjct: 4   VALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL 62

Query: 277 RRIPRYL 283
            R P ++
Sbjct: 63  LRPPLFV 69

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC; Provisional

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 190 DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPT 249
           D   ++ G +++ ++   D M P ++   +  N  LD E +++I+E  HSR PV  E+  
Sbjct: 53  DTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKD 111

Query: 250 NIIGLILVKNLLTIHPEDEVP 270
           +I G+++ K+LL     D   
Sbjct: 112 HIEGILMAKDLLPFMRSDAEA 132

Length = 292

>gnl|CDD|236933 PRK11573, PRK11573, hypothetical protein; Provisional

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 55/253 (21%), Positives = 115/253 (45%), Gaps = 29/253 (11%)

Query: 22  LVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICN- 80
           +V+ +   SG   G+M+++   L  +AK G     + A ++  ++R    L+  +LI N 
Sbjct: 1   MVVISAYFSGSETGMMTLNRYRLRHMAKQGN----RSAKRVEKLLRKPDRLISLVLIGNN 56

Query: 81  -----AAAME---ALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRY--GLAIGST 130
                A+A+     + ++ D  V+    +L  V  +L+F E++P+++ + Y   +A  S+
Sbjct: 57  LVNILASALGTIVGMRLYGDAGVAIATGVLTFV--VLVFAEVLPKTIAALYPEKVAYPSS 114

Query: 131 V--APFVRV---LVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGG 185
              AP   +   LVW+   +   + +L+ +           + EL+T+V+          
Sbjct: 115 FLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKEELRTIVH------ESRS 168

Query: 186 ELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYY 245
           +++     ++   L+L + T  D M P  E   IDIN    K ++  +    H R+ +Y 
Sbjct: 169 QISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDW-KSILRQLTHSPHGRIVLYR 227

Query: 246 EEPTNIIGLILVK 258
           +   + I ++ V+
Sbjct: 228 DSLDDAISMLRVR 240

Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	304
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	100.0
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	100.0
PRK11573	413	hypothetical protein; Provisional	100.0
COG1253	429	TlyC Hemolysins and related proteins containing CB	100.0
PF01595	183	DUF21: Domain of unknown function DUF21; InterPro:	99.97
KOG2118	498	consensus Predicted membrane protein, contains two	99.95
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.88
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.86
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.24
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.24
COG2524	294	Predicted transcriptional regulator, contains C-te	99.14
COG4109	432	Predicted transcriptional regulator containing CBS	99.06
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.02
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.01
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.88
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.85
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.75
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.75
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.71
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.69
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.68
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.68
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.67
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.67
COG3620	187	Predicted transcriptional regulator with C-termina	98.66
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.63
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.63
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.62
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.61
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.61
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.59
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.58
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.58
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.56
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.56
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.56
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.53
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.53
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.53
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.53
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.53
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.52
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.5
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.5
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.5
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.49
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.49
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.48
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.48
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.48
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.47
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.47
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.47
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.47
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.46
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.45
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.45
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.44
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.44
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.44
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.44
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.43
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.43
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.42
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.42
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.42
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.41
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.4
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.39
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.39
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.39
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.38
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.38
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.38
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.36
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.36
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.36
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.35
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.35
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.33
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.33
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.33
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.28
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.28
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.27
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.24
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.22
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.21
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.18
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.17
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.13
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.11
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.09
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.09
COG0517	117	FOG: CBS domain [General function prediction only]	98.06
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.05
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.03
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.02
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.89
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.88
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.88
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.86
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.85
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	97.85
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.82
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.81
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.78
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.77
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.77
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.76
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.75
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.73
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.73
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.73
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.72
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.71
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.7
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	97.69
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	97.69
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.68
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	97.68
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.68
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.68
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	97.67
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.67
COG2905	610	Predicted signal-transduction protein containing c	97.67
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	97.66
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.65
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.65
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	97.64
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.64
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	97.63
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.61
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	97.61
COG0517	117	FOG: CBS domain [General function prediction only]	97.61
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	97.6
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	97.6
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	97.6
COG2524	294	Predicted transcriptional regulator, contains C-te	97.6
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	97.59
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	97.58
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	97.58
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	97.58
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	97.57
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	97.57
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.56
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	97.56
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	97.55
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	97.52
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.51
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.49
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	97.49
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	97.48
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.47
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.46
PRK01862	574	putative voltage-gated ClC-type chloride channel C	97.41
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	97.4
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	97.39
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.38
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.37
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	97.35
COG3448	382	CBS-domain-containing membrane protein [Signal tra	97.34
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	97.33
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	97.32
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	97.32
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.3
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.28
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	97.27
COG2905	610	Predicted signal-transduction protein containing c	97.17
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.14
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.12
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	97.1
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	96.97
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	96.97
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	96.96
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	96.9
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	96.88
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	96.75
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	96.75
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	96.73
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	96.09
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.03
COG4109	432	Predicted transcriptional regulator containing CBS	95.87
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	95.62
COG3620	187	Predicted transcriptional regulator with C-termina	95.53
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	95.5
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	95.27
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	94.26
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	94.11
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	94.06
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	94.02
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	93.95
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	93.82
PRK11573	413	hypothetical protein; Provisional	93.47
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	87.9
COG1253	429	TlyC Hemolysins and related proteins containing CB	86.59
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	86.13
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	85.53
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	82.79

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.7e-56  Score=403.13  Aligned_cols=277  Identities=25%  Similarity=0.381  Sum_probs=243.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHH
Q 022005           12 FIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFL   91 (304)
Q Consensus        12 ~~~~~~~~~~ll~lsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lign~~~~~~~~~~~   91 (304)
                      .|..++++++|+++||||||+|||++++||.|++.++++|+++    |+++.+++++|++++++++||||++|+..+.+.
T Consensus         2 ~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~~----Akrv~kLL~k~drlig~iLIGNNLvNilasala   77 (423)
T COG4536           2 TWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNRG----AKRVEKLLEKPDRLIGTILIGNNLVNILASALA   77 (423)
T ss_pred             cchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccchh----hHHHHHHhcCchheeeeeeecccHHHHHHHHHH
Confidence            4788889999999999999999999999999999999999964    789999999999999999999999998655433


Q ss_pred             h----HHHH---HHHHHHHHhHHHHhhhhhhhHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH---HhcCCC
Q 022005           92 D----GLVS---AWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDV---LLGHGR  161 (304)
Q Consensus        92 ~----~~~~---~~~a~l~~~~l~lvfgEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~---l~~~~~  161 (304)
                      +    .++|   ..+|+.++|+++++|+|++||++|+.|||+++..+++++.++.++|+|++|+++++++.   +||.+.
T Consensus        78 T~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~  157 (423)
T COG4536          78 TILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINL  157 (423)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence            2    2333   23577788999999999999999999999999999999999999999999999988765   466542


Q ss_pred             ----cccccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcC
Q 022005          162 ----VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG  237 (304)
Q Consensus       162 ----~~~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~  237 (304)
                          +...|.||+|.+++.    ++++|...+++++|+-+++++++++|+|||+||.++..++.|++++ ++++.+.++.
T Consensus       158 ~~~~~~~~s~EElR~~v~~----~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~  232 (423)
T COG4536         158 DQAVSQLSSKEELRTAVNE----SGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSP  232 (423)
T ss_pred             ccccccccCHHHHHHHHHH----hhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCC
Confidence                346799999999994    4445777788999999999999999999999999999999999998 9999999999


Q ss_pred             CceeeeeeCCCCcEEEEEEechhcccCCccc-c---CcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          238 HSRVPVYYEEPTNIIGLILVKNLLTIHPEDE-V---PVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       238 ~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~-~---~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      |+|+|||+++.|+++|++|.||+++...+.+ .   ++..+ .++|+|||++++     +.+.|..||++
T Consensus       233 HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~-a~epyFVPe~Tp-----l~~QL~~F~~~  296 (423)
T COG4536         233 HTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRA-ADEPYFVPEGTP-----LSDQLVAFQRN  296 (423)
T ss_pred             CCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHH-hcCCeecCCCCc-----HHHHHHHHHHh
Confidence            9999999999999999999999998764432 2   33333 589999999999     99999999875

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=100.00  E-value=1.7e-54  Score=412.78  Aligned_cols=267  Identities=25%  Similarity=0.414  Sum_probs=231.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHh----HHH
Q 022005           20 VFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD----GLV   95 (304)
Q Consensus        20 ~~ll~lsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lign~~~~~~~~~~~~----~~~   95 (304)
                      ++|+++||||||+|+|++|+|+.|+++++++|++    +|+++.++++||+++++|+++||+++|.+.+.++.    .++
T Consensus         2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~----~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~   77 (408)
T TIGR03520         2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSK----KEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF   77 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4578899999999999999999999999999885    46789999999999999999999999976554332    222


Q ss_pred             H--------HHHHHHHHhHHHHhhhhhhhHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCccc
Q 022005           96 S--------AWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVL---LGHGRVAL  164 (304)
Q Consensus        96 ~--------~~~a~l~~~~l~lvfgEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l---~~~~~~~~  164 (304)
                      +        ...+++++|+++++|||++||++|.+||++++.++++|+++++++++|++|+++++++.+   +|.+. ..
T Consensus        78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~  156 (408)
T TIGR03520        78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SN  156 (408)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence            2        112345667889999999999999999999999999999999999999999999887654   45543 35


Q ss_pred             ccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeee
Q 022005          165 FRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVY  244 (304)
Q Consensus       165 ~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~  244 (304)
                      +|+|||+.+++.    +.++| ++++|++|++|+++|++++|+|+||||+++++++.+++++ ++.+.+.++||||+|||
T Consensus       157 ~t~eEl~~lv~~----~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~  230 (408)
T TIGR03520       157 ISVDQLSQALEL----TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVY  230 (408)
T ss_pred             CCHHHHHHHHHh----HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEE
Confidence            899999999984    33346 6899999999999999999999999999999999999998 99999999999999999


Q ss_pred             eCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          245 YEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       245 ~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++.|+++|++|.||++....++..++.++ +|++.+||++++     +.+++++||++
T Consensus       231 ~~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~-----l~~ll~~m~~~  283 (408)
T TIGR03520       231 KETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKK-----LDDLLRDFQEK  283 (408)
T ss_pred             cCCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCc-----HHHHHHHHHhc
Confidence            988899999999999987544334567887 689999999999     99999999874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK11573 hypothetical protein; Provisional

Probab=100.00  E-value=7.3e-54  Score=408.59  Aligned_cols=264  Identities=20%  Similarity=0.317  Sum_probs=228.0

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHh----HHH---
Q 022005           23 VMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD----GLV---   95 (304)
Q Consensus        23 l~lsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lign~~~~~~~~~~~~----~~~---   95 (304)
                      +++||||||+|+|++|+|+.|+++++++|++    +|++++++++||+++++|+++||+++|.+.+.+.+    .++   
T Consensus         2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~----~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~   77 (413)
T PRK11573          2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNR----SAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA   77 (413)
T ss_pred             eehhhHHHHHHHHHHHcCHHHHHHHHHcCCh----hHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            5689999999999999999999999999986    36789999999999999999999999876554332    222   


Q ss_pred             HHHHHHHHHhHHHHhhhhhhhHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH---HhcCCC----cccccHH
Q 022005           96 SAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDV---LLGHGR----VALFRRA  168 (304)
Q Consensus        96 ~~~~a~l~~~~l~lvfgEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~---l~~~~~----~~~~s~e  168 (304)
                      +.+.+++++|+++++|||++||++|.+||+++++++++|+++++++++|++|+++++++.   ++|.+.    ...+|+|
T Consensus        78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e  157 (413)
T PRK11573         78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE  157 (413)
T ss_pred             HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence            223456677889999999999999999999999999999999999999999999887765   456542    2468999


Q ss_pred             HHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCC
Q 022005          169 ELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP  248 (304)
Q Consensus       169 El~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~  248 (304)
                      ||+.+++.+    .  +.++++|++|++|+++|++++|+|+||||+++++++.+++++ ++.+.+.++||||+|||+++.
T Consensus       158 El~~lv~~~----~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~  230 (413)
T PRK11573        158 ELRTIVHES----R--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL  230 (413)
T ss_pred             HHHHHHHHH----h--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence            999999842    2  259999999999999999999999999999999999999998 999999999999999999888


Q ss_pred             CcEEEEEEechhcccCCc-cc---cCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          249 TNIIGLILVKNLLTIHPE-DE---VPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       249 ~~ivGiv~~kDll~~~~~-~~---~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      |+++|++|.||++....+ +.   .++.++ +||+.+||++++     +.++|++||++
T Consensus       231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~-----l~~lL~~~~~~  283 (413)
T PRK11573        231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTP-----LSTQLVKFQRN  283 (413)
T ss_pred             CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCc-----HHHHHHHHHhc
Confidence            999999999999864322 21   234465 689999999999     99999999875

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=100.00  E-value=4e-49  Score=378.72  Aligned_cols=277  Identities=27%  Similarity=0.450  Sum_probs=235.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHH
Q 022005           11 GFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIF   90 (304)
Q Consensus        11 ~~~~~~~~~~~ll~lsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lign~~~~~~~~~~   90 (304)
                      +.+..++++++|+++|||||++|+|+++++|.|+++++++|++    .|..+.++.++++++++++++|+++++...+.+
T Consensus         2 ~~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~----~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~   77 (429)
T COG1253           2 SLILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNK----RAKAALKLIERLNRYLSTVQLGITLVSLLLGAV   77 (429)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCH----hHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence            3456678888899999999999999999999999999999875    467889999999999999999999988755443


Q ss_pred             HhHHH----HHHH---------HHHHHhHHHHhhhhhhhHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022005           91 LDGLV----SAWG---------AILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL  157 (304)
Q Consensus        91 ~~~~~----~~~~---------a~l~~~~l~lvfgEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l~  157 (304)
                      +...+    ..|.         .+++.|+++++|||++||++|.+||++++++.++++++++++++|++|+++++++.++
T Consensus        78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il  157 (429)
T COG1253          78 GEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAIL  157 (429)
T ss_pred             HHHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32211    1111         1456788999999999999999999999999999999999999999999999887754


Q ss_pred             ---cCC----CcccccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHH
Q 022005          158 ---GHG----RVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELM  230 (304)
Q Consensus       158 ---~~~----~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~  230 (304)
                         |.+    .....+.+|++ +++    ++.++|.++++|++|++|+|+|++++|+|+||||+++++++.+.+.+ ++.
T Consensus       158 ~l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~  231 (429)
T COG1253         158 RLFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELI  231 (429)
T ss_pred             HHcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHH
Confidence               433    22346677887 776    45677999999999999999999999999999999999999999998 999


Q ss_pred             HHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccc--cCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          231 NLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--VPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       231 ~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~--~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +.+.+++|||+|||+++.|+++|++|.||++.....+.  ...... .+|+.+||++++     +.++|++||++
T Consensus       232 ~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~-~~~~~~Vpet~~-----~~~lL~~~r~~  300 (429)
T COG1253         232 ELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVL-VRPPLFVPETLS-----LSDLLEEFREE  300 (429)
T ss_pred             HHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhc-ccCCeEecCCCc-----HHHHHHHHHHh
Confidence            99999999999999988899999999999998654432  333333 569999999999     99999999864

>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function

Probab=99.97  E-value=2.8e-29  Score=214.59  Aligned_cols=169  Identities=28%  Similarity=0.467  Sum_probs=143.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHh--
Q 022005           15 HIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD--   92 (304)
Q Consensus        15 ~~~~~~~ll~lsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lign~~~~~~~~~~~~--   92 (304)
                      .++++++++++||+||++|+|++++|+.++++++++|++    +++++.++++||+++++|+++||++++.+.+.+..  
T Consensus         2 ~l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~----~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~   77 (183)
T PF01595_consen    2 LLLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDK----RARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVL   77 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677889999999999999999999999999999885    46789999999999999999999999876654332  


Q ss_pred             --HHH----HHHHHHHHHhHHHHhhhhhhhHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH---hcCCC--
Q 022005           93 --GLV----SAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVL---LGHGR--  161 (304)
Q Consensus        93 --~~~----~~~~a~l~~~~l~lvfgEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l---~~~~~--  161 (304)
                        ..+    +.+.+.++.++++++|||++||.+|.+||++++.+.++++++++++++|++++++++.+.+   +|.++  
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~  157 (183)
T PF01595_consen   78 ASNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEE  157 (183)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence              222    2344566678889999999999999999999999999999999999999999999887765   44442  


Q ss_pred             cccccHHHHHHHHHhhcccccCCCCCChhH
Q 022005          162 VALFRRAELKTLVNLHGNEAGKGGELTHDE  191 (304)
Q Consensus       162 ~~~~s~eEl~~lv~~~~~e~~~~g~l~~~e  191 (304)
                      ++.+|+|||+.+++    +++++|.++++|
T Consensus       158 ~~~~s~eel~~lv~----~~~e~G~i~~~E  183 (183)
T PF01595_consen  158 DPAVSEEELRSLVE----EGEEEGVIEEEE  183 (183)
T ss_pred             cCCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence            45789999999999    456779999886

Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=99.95  E-value=2.8e-29  Score=243.16  Aligned_cols=292  Identities=51%  Similarity=0.802  Sum_probs=256.8

Q ss_pred             cccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHH-HHHHHHHHHHchhHHHHHHHHHHHH
Q 022005            4 EYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRK-HAAKILPVVRNQHLLLCTLLICNAA   82 (304)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~ll~lsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~-~a~~~~~l~~~~~~~l~t~lign~~   82 (304)
                      ...||+..++....++.+++++++++||.+.++++.+-..++.+.+.|+...++ .++++....++.+.+++|.+++|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~~   83 (498)
T KOG2118|consen    4 AIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNSI   83 (498)
T ss_pred             cccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhhh
Confidence            456888887777777777999999999999999999999999999999876654 5667888888899999999999999


Q ss_pred             HHHH-HHHHHhHHHHHHHHHHHHhHHHHhhhhhhhHHHHHHhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 022005           83 AMEA-LPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGR  161 (304)
Q Consensus        83 ~~~~-~~~~~~~~~~~~~a~l~~~~l~lvfgEiiPK~la~~~~~~i~~~~a~~l~~~~~l~~P~~~~~~~~~~~l~~~~~  161 (304)
                      ++.+ +..++....+.|.++.+++..++.|||++|+.++.+|.-.+...+.++.+++.++++|+.|+++++ ...+|...
T Consensus        84 ~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~~  162 (498)
T KOG2118|consen   84 ATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLNL  162 (498)
T ss_pred             ccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhcccc
Confidence            9887 766666666678898899999999999999999999999999999999999999999999999988 66677766


Q ss_pred             cccccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCcee
Q 022005          162 VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRV  241 (304)
Q Consensus       162 ~~~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~  241 (304)
                      +....+.++..++..++.|+++ |.+..+|..++.+++++.++.++|+|||-.+++.++.+..++++....+.++||||+
T Consensus       163 ~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sri  241 (498)
T KOG2118|consen  163 GEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRI  241 (498)
T ss_pred             ccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCccee
Confidence            5667788999999988777655 899999999999999999999999999999999999999998778888889999999


Q ss_pred             eeeeCCCCcEEEEEEechhcccC----CccccCcccccccccceecCCCCCchhHHHHHHHHHhh
Q 022005          242 PVYYEEPTNIIGLILVKNLLTIH----PEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFST  302 (304)
Q Consensus       242 PV~~~~~~~ivGiv~~kDll~~~----~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~  302 (304)
                      |||+++..+.+|.+..+..+...    ..+..++.+.+.++...+|++++     ..+.++.||+
T Consensus       242 pv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~-----~~~~l~~~~~  301 (498)
T KOG2118|consen  242 PVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMP-----LLDLLNEFQK  301 (498)
T ss_pred             eeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCccc-----HHHHHHHHhh
Confidence            99998878888887777776654    33456788888899999999999     9999999986

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.88  E-value=1.7e-22  Score=184.85  Aligned_cols=137  Identities=25%  Similarity=0.417  Sum_probs=118.4

Q ss_pred             HHHHhcCCCcccccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHH
Q 022005          153 LDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNL  232 (304)
Q Consensus       153 ~~~l~~~~~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~  232 (304)
                      ..+++|.+.   .|++||+.+++.    +.++|.++++|+++++|+|+|++++|+|+|+||.++++++.+++++ ++.+.
T Consensus        23 ~~~~~~~~~---~t~eEl~~l~~~----~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~   94 (292)
T PRK15094         23 LSQLFHGEP---KNRDELLALIRD----SEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDV   94 (292)
T ss_pred             HHHHcCCCC---CCHHHHHHHHHh----HhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHH
Confidence            344565543   489999999983    4567999999999999999999999999999999999999999998 99999


Q ss_pred             HHhcCCceeeeeeCCCCcEEEEEEechhcccCCc--cccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          233 ILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       233 ~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +.+++|+|+|||+++.|+++|+|+.||++.....  ...++.++ ++++.++|++++     +.++++.|+++
T Consensus        95 i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l-~r~~~~V~e~~~-----l~~~L~~m~~~  161 (292)
T PRK15094         95 IIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKV-LRQAVVVPESKR-----VDRMLKEFRSQ  161 (292)
T ss_pred             HHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHH-cCCCcCcCCCCc-----HHHHHHHHHhc
Confidence            9999999999998766899999999999864321  22357887 588889999999     99999999864

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.86  E-value=3.3e-22  Score=171.50  Aligned_cols=141  Identities=25%  Similarity=0.415  Sum_probs=123.9

Q ss_pred             HHHHHHHHhcCCCcccccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHH
Q 022005          149 ISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKE  228 (304)
Q Consensus       149 ~~~~~~~l~~~~~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e  228 (304)
                      +.++++.+|..+   +-+++|+..+++    ++++.+.++++-..|++++++..+++|+|||+||+++++++.+++++ +
T Consensus        19 fe~L~~~~f~gE---pknr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~   90 (293)
T COG4535          19 FERLLSQLFHGE---PKNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E   90 (293)
T ss_pred             HHHHHHHHhcCC---CcCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence            455565666443   347899999998    45566889999999999999999999999999999999999999999 9


Q ss_pred             HHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc--cccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          229 LMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       229 ~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .+..+.++.||||||+.++.|+|.|+++.||+++....  ....++++ .||+.+|||++.     +..+|++|+.+
T Consensus        91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKr-----vd~lLkeFR~~  161 (293)
T COG4535          91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKR-----VDRLLKEFRSQ  161 (293)
T ss_pred             HHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchh-----HHHHHHHHHhh
Confidence            99999999999999999999999999999999986533  34688887 899999999999     99999999864

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.24  E-value=2.3e-11  Score=118.10  Aligned_cols=125  Identities=14%  Similarity=0.155  Sum_probs=102.0

Q ss_pred             cccHHHHHHHHHhhcccccCC------CCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHh--
Q 022005          164 LFRRAELKTLVNLHGNEAGKG------GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILE--  235 (304)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~------g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~--  235 (304)
                      .++.||+..+++..    .++      +.++++|++.+++++++++.+|+++|++  +++++++++|++ ++++.+.+  
T Consensus        89 ~l~~dd~~~ll~~l----~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~  161 (449)
T TIGR00400        89 EMNLDDVIDLLEEV----PANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA  161 (449)
T ss_pred             cCChhHHHHHHHhC----CHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence            46789999999732    223      4799999999999999999999999985  888999999998 99999975  


Q ss_pred             -cCCc--eeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          236 -KGHS--RVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       236 -~~~s--r~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                       .+++  .+||.|+ .|+++|+++.+|++...+  +.+++++|.+++.+++++++     +.++++.|+++
T Consensus       162 ~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a~~--~~~v~~im~~~~~~v~~~~~-----~~eal~~m~~~  224 (449)
T TIGR00400       162 KTKEDIYTLYVTNE-SKHLKGVLSIRDLILAKP--EEILSSIMRSSVFSIVGVND-----QEEVARLIQKY  224 (449)
T ss_pred             CCccceeEEEEECC-CCeEEEEEEHHHHhcCCC--CCcHHHHhCCCCeeECCCCC-----HHHHHHHHHHc
Confidence             2333  4555554 489999999999986532  44789997667788999999     99999999864

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.24  E-value=3.6e-11  Score=116.61  Aligned_cols=122  Identities=13%  Similarity=0.266  Sum_probs=101.3

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCCh-----hHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCC
Q 022005          164 LFRRAELKTLVNLHGNEAGKGGELTH-----DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH  238 (304)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~~-----~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~  238 (304)
                      .+|++|+..++..    .+..|.+++     +|++++++++++++     .|++  +++++++++++. ++++.+.++++
T Consensus        44 tvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~-----~~~~--~~vtl~~~~tv~-eal~~m~~~~~  111 (450)
T TIGR01302        44 TVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAEN-----GIIS--DPVTISPETTVA-DVLELMERKGI  111 (450)
T ss_pred             ccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccC-----ceec--CceEeCCCCCHH-HHHHHHHHcCC
Confidence            5799999999874    334688984     89999999996655     4654  678899999998 99999999999


Q ss_pred             ceeeeeeCCC--CcEEEEEEechhcccCCccccCcccccc-cccceecCCCCCchhHHHHHHHHHhhc
Q 022005          239 SRVPVYYEEP--TNIIGLILVKNLLTIHPEDEVPVKSVTI-RRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       239 sr~PV~~~~~--~~ivGiv~~kDll~~~~~~~~~v~~~~~-~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++||++++.  ++++|+|+.+|++.... ...++.++|. +++.+++++++     +.++++.|+++
T Consensus       112 s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~~~~V~dvm~~~~~~~V~~~~s-----l~eal~~m~~~  173 (450)
T TIGR01302       112 SGIPVVEDGDMTGKLVGIITKRDIRFVKD-KGKPVSEVMTREEVITVPEGID-----LEEALKVLHEH  173 (450)
T ss_pred             CEEEEEeCCCCCCeEEEEEEHHHHhhhhc-CCCCHHHhhCCCCCEEECCCCc-----HHHHHHHHHHc
Confidence            9999998653  69999999999975432 3457899976 38999999999     99999999764

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.14  E-value=3.1e-11  Score=105.55  Aligned_cols=99  Identities=15%  Similarity=0.310  Sum_probs=88.4

Q ss_pred             HhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc--ccCcc
Q 022005          195 IAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EVPVK  272 (304)
Q Consensus       195 i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~  272 (304)
                      +.++....+.+|+++|++  +++++.+|+|+. |+.+.+.+++++..||+|+  |+++|+++..|+..+..++  ..+|+
T Consensus       163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~  237 (294)
T COG2524         163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS  237 (294)
T ss_pred             EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence            455667889999999996  889999999998 9999999999999999985  5999999999998876543  56899


Q ss_pred             cccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          273 SVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       273 ~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++|.+.++++.+++.     +.|+++.|.++
T Consensus       238 ~~M~k~vitI~eDe~-----i~dAir~M~~~  263 (294)
T COG2524         238 DYMRKNVITINEDED-----IYDAIRLMNKN  263 (294)
T ss_pred             HHhccCCceEcCchh-----HHHHHHHHHhc
Confidence            999999999999999     99999999764

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.06  E-value=2.3e-10  Score=104.15  Aligned_cols=101  Identities=21%  Similarity=0.375  Sum_probs=87.0

Q ss_pred             HHHHHhhhh-----ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005          191 ETTIIAGAL-----ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       191 e~~~i~~~l-----~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~  265 (304)
                      -+.||.+++     .-+-.+|.|||+|..+..++..+++++ +..++..++|||||||++.. .+++|+|+.||+....+
T Consensus       170 VAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~  247 (432)
T COG4109         170 VATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP  247 (432)
T ss_pred             HHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC
Confidence            455666555     345578999999999999999999998 99999999999999999865 79999999999987654


Q ss_pred             ccccCcccccccccceecCCCCCchhHHHHHHHHH
Q 022005          266 EDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLF  300 (304)
Q Consensus       266 ~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m  300 (304)
                        +.++.++|.|.|.+|.+.++     +..+-+.|
T Consensus       248 --~t~ieKVMtknp~tv~~~ts-----VAsvaq~M  275 (432)
T COG4109         248 --STTIEKVMTKNPITVRAKTS-----VASVAQMM  275 (432)
T ss_pred             --CccHHHHhccCCeeecccch-----HHHHHHHH
Confidence              45889999999999999999     88877776

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.02  E-value=1e-08  Score=91.55  Aligned_cols=125  Identities=15%  Similarity=0.246  Sum_probs=97.8

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCChhHHHHHhh-------hhccccccccccccccceEEEEeCCCCccHHHHHHHHhc
Q 022005          164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAG-------ALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEK  236 (304)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~-------~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~  236 (304)
                      .+|.+|+...++-    -.|-=+++.++-+-+-+       .-.+.+.+..|||++  ++++++.+++++ ++.+++.++
T Consensus       202 gfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H  274 (382)
T COG3448         202 GFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH  274 (382)
T ss_pred             CCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence            4788999988873    22334466654332211       125678899999996  999999999999 999999999


Q ss_pred             CCceeeeeeCCCCcEEEEEEechhcccCCc---------cccCcccccccccceecCCCCCchhHHHHHHHHHh
Q 022005          237 GHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFS  301 (304)
Q Consensus       237 ~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---------~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~  301 (304)
                      ++..+||.|++ .+++|+|+.+|+++..+.         ...+++.+|..++.++.++++     ..+++-.|.
T Consensus       275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtp-----a~~lvp~la  342 (382)
T COG3448         275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTP-----AVELVPRLA  342 (382)
T ss_pred             Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCc-----HHHHHHHhh
Confidence            99999999875 899999999999873221         245789998889999999999     888887764

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.01  E-value=1.4e-09  Score=106.53  Aligned_cols=121  Identities=17%  Similarity=0.237  Sum_probs=100.1

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCC-----hhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCC
Q 022005          164 LFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH  238 (304)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~-----~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~  238 (304)
                      .+|++|+...+..    .+..|.+.     ++++++++++..     ++|+|.+  ++.++++++++. ++.+.+.++++
T Consensus        51 ~vT~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~vk~-----~~dim~~--~~v~i~~~~tv~-ea~~~m~~~~~  118 (486)
T PRK05567         51 TVTEARMAIAMAR----EGGIGVIHKNMSIEEQAEEVRKVKR-----SESGVVT--DPVTVTPDTTLA-EALALMARYGI  118 (486)
T ss_pred             CcCHHHHHHHHHh----CCCCCEecCCCCHHHHHHHHHHhhh-----hhhcccC--CCeEeCCCCCHH-HHHHHHHHhCC
Confidence            5789999999973    34457777     478889998875     5677864  788899999998 99999999999


Q ss_pred             ceeeeeeCCCCcEEEEEEechhcccCCccccCcccccc-cccceecCCCCCchhHHHHHHHHHhhc
Q 022005          239 SRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTI-RRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       239 sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~-~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++||+++ .++++|+|+.+|+..... ...++.++|. +++.+++++++     +.++++.|+++
T Consensus       119 ~~lpVvd~-~g~lvGiVt~~DL~~~~~-~~~~V~dim~~~~~v~v~~~~s-----l~eal~~m~~~  177 (486)
T PRK05567        119 SGVPVVDE-NGKLVGIITNRDVRFETD-LSQPVSEVMTKERLVTVPEGTT-----LEEALELLHEH  177 (486)
T ss_pred             CEEEEEcc-CCEEEEEEEHHHhhhccc-CCCcHHHHcCCCCCEEECCCCC-----HHHHHHHHHHc
Confidence            99999986 489999999999975432 3457889876 78899999999     99999999763

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.88  E-value=2.7e-09  Score=99.34  Aligned_cols=95  Identities=16%  Similarity=0.099  Sum_probs=79.8

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----cccCccccccc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIR  277 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~~  277 (304)
                      ...+|+|+|++..++.++++++|+. ++.+.+.+++++.+||++++ |+++|+|+.+|+.+....    ...++.++|.+
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~  277 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP  277 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence            5678999998655788999999998 99999999888888888754 899999999998764322    23579999888


Q ss_pred             ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          278 RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       278 ~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++.+++++++     +.++++.|.++
T Consensus       278 ~~~~v~~~~~-----l~~a~~~m~~~  298 (326)
T PRK10892        278 GGIRVRPGIL-----AVDALNLMQSR  298 (326)
T ss_pred             CCEEECCCCC-----HHHHHHHHHHC
Confidence            9999999999     99999999754

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.85  E-value=2.8e-09  Score=73.04  Aligned_cols=54  Identities=30%  Similarity=0.568  Sum_probs=49.8

Q ss_pred             ccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       206 V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      |+|+|++  +++++++++++. ++.+.+.+++++++||++++ ++++|+++.+|+++.
T Consensus         1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~   54 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKA   54 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhh
Confidence            5799987  888999999998 99999999999999999875 999999999999864

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.75  E-value=1.8e-08  Score=77.67  Aligned_cols=82  Identities=15%  Similarity=0.231  Sum_probs=69.3

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHH
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALF  294 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~  294 (304)
                      ++.++++++++. ++++.+.+++++++||++++ |+++|+++.+|+++....+..++.++|.+++.+++++++     +.
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~-----l~   75 (110)
T cd04605           3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEP-----ID   75 (110)
T ss_pred             CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCc-----HH
Confidence            556789999998 99999999999999999864 899999999999865433334578887788999999999     99


Q ss_pred             HHHHHHhhc
Q 022005          295 RSLSLFSTS  303 (304)
Q Consensus       295 ~~l~~m~~~  303 (304)
                      ++++.|+++
T Consensus        76 ~~~~~~~~~   84 (110)
T cd04605          76 VAARKMERH   84 (110)
T ss_pred             HHHHHHHHh
Confidence            999999763

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.75  E-value=2.3e-08  Score=77.21  Aligned_cols=82  Identities=15%  Similarity=0.236  Sum_probs=68.5

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc-----cccCcccccccccceecCCCCCc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----DEVPVKSVTIRRIPRYLISLGKC  289 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~~~~~~~~~~v~~~~~~~  289 (304)
                      ++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+++....     ...++.++|.+++.+++++.+  
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--   77 (113)
T cd04623           2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDT--   77 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCc--
Confidence            456789999998 99999999999999999865 799999999999864321     134688887788899999999  


Q ss_pred             hhHHHHHHHHHhhc
Q 022005          290 SCALFRSLSLFSTS  303 (304)
Q Consensus       290 ~~~l~~~l~~m~~~  303 (304)
                         +.++++.|.++
T Consensus        78 ---~~~~l~~~~~~   88 (113)
T cd04623          78 ---VDEAMALMTER   88 (113)
T ss_pred             ---HHHHHHHHHHc
Confidence               99999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.71  E-value=3.1e-08  Score=76.60  Aligned_cols=82  Identities=15%  Similarity=0.182  Sum_probs=68.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc---ccCcccccccccceecCCCCCchh
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---EVPVKSVTIRRIPRYLISLGKCSC  291 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~---~~~v~~~~~~~~~~v~~~~~~~~~  291 (304)
                      ++.+++++++++ ++++.+.+++++++||++++ ++++|+++.+|++......   +.++.++|.+++.+++++++    
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~----   75 (111)
T cd04626           2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDT----   75 (111)
T ss_pred             CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCc----
Confidence            456789999998 89999999999999999864 8999999999998653221   34678887788889999999    


Q ss_pred             HHHHHHHHHhhc
Q 022005          292 ALFRSLSLFSTS  303 (304)
Q Consensus       292 ~l~~~l~~m~~~  303 (304)
                       +.++++.|+++
T Consensus        76 -l~~~~~~~~~~   86 (111)
T cd04626          76 -IDEALDIMREK   86 (111)
T ss_pred             -HHHHHHHHHHc
Confidence             99999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.69  E-value=2.1e-08  Score=100.33  Aligned_cols=94  Identities=13%  Similarity=0.168  Sum_probs=78.8

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC---Cc-cccCcccccc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH---PE-DEVPVKSVTI  276 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~---~~-~~~~v~~~~~  276 (304)
                      ++..+|+|+|++  +..+++++++++ |+.+.+.+++++.+||+|++ ++++|+++.+|+.+..   .+ ++.++.++|.
T Consensus       444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~  519 (574)
T PRK01862        444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH  519 (574)
T ss_pred             HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence            466789999986  556799999998 99999999999999999864 8999999999998732   11 2356888988


Q ss_pred             cccceecCCCCCchhHHHHHHHHHhhc
Q 022005          277 RRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       277 ~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++..++++++     +.++++.|+++
T Consensus       520 ~~~~~v~~d~~-----L~~al~~m~~~  541 (574)
T PRK01862        520 TPFPLLTPDMP-----LGDALEHFMAF  541 (574)
T ss_pred             CCCeeECCCCC-----HHHHHHHHHhc
Confidence            88889999999     99999999764

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.68  E-value=1.9e-08  Score=93.43  Aligned_cols=94  Identities=12%  Similarity=0.058  Sum_probs=78.3

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC---ccccCccccccccc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRI  279 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~---~~~~~v~~~~~~~~  279 (304)
                      ..+|+|+|.+..++.++++++++. ++.+.+.+++.+.+||++++ ++++|+|+.+|+.+...   ....++.++|.+++
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence            358999998643488999999998 99999999999999999865 89999999999875321   12356889988888


Q ss_pred             ceecCCCCCchhHHHHHHHHHhhc
Q 022005          280 PRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       280 ~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .+++++.+     +.++++.|.++
T Consensus       274 ~~v~~~~~-----l~~a~~~m~~~  292 (321)
T PRK11543        274 TTLQAQSR-----AIDAKEILMKR  292 (321)
T ss_pred             EEECCCCC-----HHHHHHHHHHc
Confidence            89999999     99999999753

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.68  E-value=3e-08  Score=96.48  Aligned_cols=94  Identities=16%  Similarity=0.257  Sum_probs=79.6

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----cccCcccccc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTI  276 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~  276 (304)
                      ++.++|+|+|.+  ++.++++++++. ++++.+.+++++.+||++++ ++++|+|+.+|+++....    ...++.++|.
T Consensus       332 l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~  407 (454)
T TIGR01137       332 LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDAVSKVMS  407 (454)
T ss_pred             hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCCHHHhcC
Confidence            678899999986  678899999998 99999999999999999864 799999999999864321    2346888887


Q ss_pred             cccceecCCCCCchhHHHHHHHHHhhc
Q 022005          277 RRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       277 ~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++.+++++++     +.++++.|+++
T Consensus       408 ~~~~~v~~~~~-----l~~a~~~~~~~  429 (454)
T TIGR01137       408 KKFIQIGEGEK-----LSDLSKFLEKN  429 (454)
T ss_pred             CCCeEECCcCc-----HHHHHHHHHHC
Confidence            77889999999     99999999753

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.67  E-value=7.6e-08  Score=74.77  Aligned_cols=82  Identities=27%  Similarity=0.405  Sum_probs=69.4

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc--ccCcccccccccceecCCCCCchhH
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EVPVKSVTIRRIPRYLISLGKCSCA  292 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~~  292 (304)
                      ++.++++++++. ++.+.+.+++++++||.+++ ++++|+++.+|+.+...+.  ..++.++|..++..++++++     
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~-----   74 (111)
T cd04603           2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSK-----   74 (111)
T ss_pred             ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCc-----
Confidence            467899999998 99999999999999999864 8999999999998643322  24688998888889999999     


Q ss_pred             HHHHHHHHhhc
Q 022005          293 LFRSLSLFSTS  303 (304)
Q Consensus       293 l~~~l~~m~~~  303 (304)
                      +.++++.|.++
T Consensus        75 l~~al~~m~~~   85 (111)
T cd04603          75 VTDLLRIFRET   85 (111)
T ss_pred             HHHHHHHHHHc
Confidence            99999999764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.67  E-value=7e-08  Score=75.09  Aligned_cols=82  Identities=18%  Similarity=0.252  Sum_probs=68.3

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC-C----ccccCcccccccccceecCCCCCc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-P----EDEVPVKSVTIRRIPRYLISLGKC  289 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~-~----~~~~~v~~~~~~~~~~v~~~~~~~  289 (304)
                      ++.++++++++. ++++.+.+.+++.+||++++.++++|+++.+|+++.. .    ....++.++|.+++.+++++++  
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~--   78 (114)
T cd04630           2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMD--   78 (114)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCC--
Confidence            567899999998 9999999999999999985337999999999997632 1    1234678887788899999999  


Q ss_pred             hhHHHHHHHHHhh
Q 022005          290 SCALFRSLSLFST  302 (304)
Q Consensus       290 ~~~l~~~l~~m~~  302 (304)
                         +.++++.|.+
T Consensus        79 ---l~~~~~~~~~   88 (114)
T cd04630          79 ---IKYCARLMER   88 (114)
T ss_pred             ---HHHHHHHHHH
Confidence               9999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.66  E-value=1.9e-08  Score=82.18  Aligned_cols=108  Identities=21%  Similarity=0.298  Sum_probs=82.7

Q ss_pred             CCCCCChhH---HHHHhhhhcc--ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEe
Q 022005          183 KGGELTHDE---TTIIAGALEL--TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (304)
Q Consensus       183 ~~g~l~~~e---~~~i~~~l~l--~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~  257 (304)
                      |.|.+++.=   +.+++...+-  ...+++.+|+  .+++.+.+++++. ++++.|.++|||.+||+++  |.++|-++.
T Consensus        39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~--spvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE  113 (187)
T COG3620          39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMH--SPVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITE  113 (187)
T ss_pred             hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhcc--CCeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecH
Confidence            347777643   2223222222  3468999998  4899999999998 9999999999999999985  799999999


Q ss_pred             chhcccCCc-----cccCcccccccccceecCCCCCchhHHHHHHHHH
Q 022005          258 KNLLTIHPE-----DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLF  300 (304)
Q Consensus       258 kDll~~~~~-----~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m  300 (304)
                      .|+.+..-+     ...+++++|-.+.+.|.++.+     +...-+.+
T Consensus       114 ~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~-----l~vI~~LL  156 (187)
T COG3620         114 NDIVRALLEGMESIRSLRVREVMGEPFPTVSPDES-----LNVISQLL  156 (187)
T ss_pred             HHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCC-----HHHHHHHH
Confidence            999875422     246889998888899999999     66554443

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.63  E-value=9.1e-08  Score=75.35  Aligned_cols=82  Identities=13%  Similarity=0.232  Sum_probs=68.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc--------------ccCcccccccccc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--------------EVPVKSVTIRRIP  280 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~--------------~~~v~~~~~~~~~  280 (304)
                      ++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|++......              ..++.++|.+++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (124)
T cd04600           3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV   80 (124)
T ss_pred             CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence            567899999998 99999999999999999865 8999999999997643211              2367888778899


Q ss_pred             eecCCCCCchhHHHHHHHHHhhc
Q 022005          281 RYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       281 ~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++++++     +.++++.|+++
T Consensus        81 ~~~~~~~-----l~~~~~~~~~~   98 (124)
T cd04600          81 TVRPDTP-----IAELVPLLADG   98 (124)
T ss_pred             eeCCCCc-----HHHHHHHHHhc
Confidence            9999999     99999999753

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.63  E-value=1.3e-07  Score=72.37  Aligned_cols=70  Identities=14%  Similarity=0.324  Sum_probs=60.5

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHH
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALF  294 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~  294 (304)
                      +++++++++++. ++.+.+.+++++.+||++++.++++|+++.+|+.+...             +.++.++++     +.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~-----l~   62 (98)
T cd04618           2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERS-----LF   62 (98)
T ss_pred             eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCc-----HH
Confidence            578899999999 99999999999999999864478999999999975321             667899999     99


Q ss_pred             HHHHHHhhc
Q 022005          295 RSLSLFSTS  303 (304)
Q Consensus       295 ~~l~~m~~~  303 (304)
                      ++++.|.++
T Consensus        63 ~a~~~m~~~   71 (98)
T cd04618          63 DAALLLLKN   71 (98)
T ss_pred             HHHHHHHHC
Confidence            999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.62  E-value=6.2e-08  Score=74.87  Aligned_cols=82  Identities=18%  Similarity=0.290  Sum_probs=68.9

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----cccCcccccccccceecCCCCCch
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRYLISLGKCS  290 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~~~~~~v~~~~~~~~  290 (304)
                      ++.++++++++. ++.+.+.+.+++++||++++ |+++|+++.+|+.+....    +..++.++|.+++.+++++++   
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~---   76 (114)
T cd04613           2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDS---   76 (114)
T ss_pred             CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCC---
Confidence            456799999999 99999999999999999865 899999999999764321    125688888788999999999   


Q ss_pred             hHHHHHHHHHhhc
Q 022005          291 CALFRSLSLFSTS  303 (304)
Q Consensus       291 ~~l~~~l~~m~~~  303 (304)
                        +.++++.|+++
T Consensus        77 --~~~~~~~~~~~   87 (114)
T cd04613          77 --LEDALKKFEDS   87 (114)
T ss_pred             --HHHHHHHHhhC
Confidence              99999999753

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.61  E-value=8.3e-08  Score=74.56  Aligned_cols=81  Identities=19%  Similarity=0.224  Sum_probs=68.1

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc---------ccCcccccccccceecCC
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---------EVPVKSVTIRRIPRYLIS  285 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~---------~~~v~~~~~~~~~~v~~~  285 (304)
                      ++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.+|+++...+.         ..++.++|.+++..++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~   79 (116)
T cd04643           2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD   79 (116)
T ss_pred             CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence            567899999998 99999999999999999864 7999999999997643211         346788877788899999


Q ss_pred             CCCchhHHHHHHHHHhh
Q 022005          286 LGKCSCALFRSLSLFST  302 (304)
Q Consensus       286 ~~~~~~~l~~~l~~m~~  302 (304)
                      ++     +.++++.|.+
T Consensus        80 ~~-----l~~a~~~~~~   91 (116)
T cd04643          80 AD-----IEEILHLLID   91 (116)
T ss_pred             CC-----HHHHHHHHhc
Confidence            99     9999999965

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.61  E-value=9.5e-08  Score=73.61  Aligned_cols=80  Identities=16%  Similarity=0.228  Sum_probs=68.8

Q ss_pred             ceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHH
Q 022005          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCAL  293 (304)
Q Consensus       214 ~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l  293 (304)
                      .++.+++++++++ ++.+.+.+++++++||++++ ++++|+++.+|++...  ...++.++|.+++.+++++++     +
T Consensus         2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~v~~~~~-----l   72 (108)
T cd04596           2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD--PDTTIEKVMTKNPITVNPKTS-----V   72 (108)
T ss_pred             CccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc--ccccHHHHhcCCCeEECCCCC-----H
Confidence            3677899999998 99999999999999999864 8999999999997643  234688887788899999999     9


Q ss_pred             HHHHHHHhh
Q 022005          294 FRSLSLFST  302 (304)
Q Consensus       294 ~~~l~~m~~  302 (304)
                      .++++.|.+
T Consensus        73 ~~~~~~~~~   81 (108)
T cd04596          73 ASVAHMMIW   81 (108)
T ss_pred             HHHHHHHHH
Confidence            999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.59  E-value=1.4e-07  Score=74.23  Aligned_cols=82  Identities=12%  Similarity=0.187  Sum_probs=64.2

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccc-----cCcc------cccccccceec
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE-----VPVK------SVTIRRIPRYL  283 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~-----~~v~------~~~~~~~~~v~  283 (304)
                      ++.++++++++. ++.+.+.+++++++||+++ .|+++|+++.+|++....++.     .++.      +.|.+++.+++
T Consensus         2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   79 (120)
T cd04641           2 NIATARPDTPLI-DVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS   79 (120)
T ss_pred             CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence            567899999998 9999999999999999986 489999999999986432111     1122      22335578899


Q ss_pred             CCCCCchhHHHHHHHHHhhc
Q 022005          284 ISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       284 ~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++     +.++++.|.++
T Consensus        80 ~~~~-----l~~~~~~m~~~   94 (120)
T cd04641          80 PDDC-----LRTIFDLIVKA   94 (120)
T ss_pred             CCCc-----HHHHHHHHHhc
Confidence            9999     99999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.58  E-value=1e-07  Score=74.90  Aligned_cols=82  Identities=18%  Similarity=0.286  Sum_probs=68.4

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc-------------cccCcccccccccce
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-------------DEVPVKSVTIRRIPR  281 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-------------~~~~v~~~~~~~~~~  281 (304)
                      ++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+++....             ...++.++|.+++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (122)
T cd04803           2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT   79 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence            456789999998 99999999999999999864 899999999998764321             234677887778899


Q ss_pred             ecCCCCCchhHHHHHHHHHhhc
Q 022005          282 YLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       282 v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++++     +.++++.|+++
T Consensus        80 v~~~~~-----~~~~~~~~~~~   96 (122)
T cd04803          80 VTPDTP-----LREAAEIMVEN   96 (122)
T ss_pred             eCCCCc-----HHHHHHHHHHc
Confidence            999999     99999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.58  E-value=1e-07  Score=93.00  Aligned_cols=91  Identities=12%  Similarity=0.167  Sum_probs=78.5

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccce
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR  281 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~  281 (304)
                      +..+++++|++  +++++++++++. ++.+.+.+++++.+||++++ ++++|+|+.+|+.....  ..++.++|.+++.+
T Consensus        87 ~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~~--~~~V~diMt~~~it  160 (479)
T PRK07807         87 AWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVDR--FTQVRDVMSTDLVT  160 (479)
T ss_pred             hhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCcc--CCCHHHhccCCceE
Confidence            35578899975  788999999998 99999999999999999864 79999999999965432  35699999899999


Q ss_pred             ecCCCCCchhHHHHHHHHHhhc
Q 022005          282 YLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       282 v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++++     +.++++.|.++
T Consensus       161 V~~d~s-----L~eAl~lM~~~  177 (479)
T PRK07807        161 LPAGTD-----PREAFDLLEAA  177 (479)
T ss_pred             ECCCCc-----HHHHHHHHHhc
Confidence            999999     99999999764

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.56  E-value=1.9e-07  Score=72.84  Aligned_cols=82  Identities=18%  Similarity=0.191  Sum_probs=68.9

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC-----ccccCcccccccccceecCCCCCc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----EDEVPVKSVTIRRIPRYLISLGKC  289 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~-----~~~~~v~~~~~~~~~~v~~~~~~~  289 (304)
                      ++.++++++++. ++.+.+.+.++..+||++++ ++++|+++.+|+.+...     ....++.++|.+++..++++++  
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~--   77 (114)
T cd04619           2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDL--   77 (114)
T ss_pred             ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCC--
Confidence            456789999998 99999999999999999864 89999999999876432     1235788888788899999999  


Q ss_pred             hhHHHHHHHHHhhc
Q 022005          290 SCALFRSLSLFSTS  303 (304)
Q Consensus       290 ~~~l~~~l~~m~~~  303 (304)
                         +.++++.|.++
T Consensus        78 ---l~~a~~~m~~~   88 (114)
T cd04619          78 ---LHDVWQVMKQR   88 (114)
T ss_pred             ---HHHHHHHHHHc
Confidence               99999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.56  E-value=9e-08  Score=86.48  Aligned_cols=92  Identities=13%  Similarity=0.122  Sum_probs=77.8

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC---ccccCcccccccccc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRIP  280 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~---~~~~~v~~~~~~~~~  280 (304)
                      ++|+|+|.+. ++.++++++++. ++++.+.+.+++.+||++++ ++++|+++.+|+.+...   ....+++++|.+++.
T Consensus       155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~  231 (268)
T TIGR00393       155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK  231 (268)
T ss_pred             hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence            6899999863 277899999998 99999999999999999865 89999999999976432   124578999888888


Q ss_pred             eecCCCCCchhHHHHHHHHHhhc
Q 022005          281 RYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       281 ~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .++++++     +.++++.|.++
T Consensus       232 ~v~~~~~-----l~~a~~~m~~~  249 (268)
T TIGR00393       232 TFKLDAL-----LLEALEFLERR  249 (268)
T ss_pred             EECCCCc-----HHHHHHHHHHc
Confidence            9999999     99999999764

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.56  E-value=1.2e-07  Score=74.85  Aligned_cols=83  Identities=17%  Similarity=0.308  Sum_probs=68.6

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc---------------ccCccccccccc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---------------EVPVKSVTIRRI  279 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~---------------~~~v~~~~~~~~  279 (304)
                      ++.++++++++. ++++.+.+++++++||++++.|+++|+++.+|++....+.               ..++.++|.+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04631           2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV   80 (125)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence            456789999998 9999999999999999986448999999999998643221               236778877789


Q ss_pred             ceecCCCCCchhHHHHHHHHHhhc
Q 022005          280 PRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       280 ~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .+++++++     +.++++.|+++
T Consensus        81 ~~v~~~~~-----l~~~~~~~~~~   99 (125)
T cd04631          81 ITITPDDS-----IKDAAELMLEK   99 (125)
T ss_pred             eEeCCCCc-----HHHHHHHHHHc
Confidence            99999999     99999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.53  E-value=1.4e-07  Score=72.80  Aligned_cols=82  Identities=21%  Similarity=0.308  Sum_probs=68.4

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC--ccccCcccccccccceecCCCCCchhH
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP--EDEVPVKSVTIRRIPRYLISLGKCSCA  292 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~--~~~~~v~~~~~~~~~~v~~~~~~~~~~  292 (304)
                      +..++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+.+...  ....++.++|.+++.+++++++     
T Consensus         2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~-----   74 (111)
T cd04639           2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSAT-----   74 (111)
T ss_pred             CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCc-----
Confidence            456789999998 89999988999999999864 89999999999976422  1234788887788999999999     


Q ss_pred             HHHHHHHHhhc
Q 022005          293 LFRSLSLFSTS  303 (304)
Q Consensus       293 l~~~l~~m~~~  303 (304)
                      +.++++.|+++
T Consensus        75 ~~~~~~~~~~~   85 (111)
T cd04639          75 LDAVLRLMQQG   85 (111)
T ss_pred             HHHHHHHHHhc
Confidence            99999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.53  E-value=1.8e-07  Score=75.86  Aligned_cols=82  Identities=17%  Similarity=0.190  Sum_probs=65.1

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcccc---C------------ccccc----
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV---P------------VKSVT----  275 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~---~------------v~~~~----  275 (304)
                      ++.++++++++. ++++.+.+++++.+||++++ ++++|+++.+|+++.......   .            +.++|    
T Consensus         2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~   79 (133)
T cd04592           2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI   79 (133)
T ss_pred             CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence            567899999999 99999999999999999864 899999999998864321110   1            22343    


Q ss_pred             -----ccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          276 -----IRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       276 -----~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                           .+++.+++++++     +.++++.|.++
T Consensus        80 ~~~~~~~~~~~v~~~~~-----l~ea~~~m~~~  107 (133)
T cd04592          80 SYGGQECGLWTCTPDTD-----LTTAKKLMEAK  107 (133)
T ss_pred             hhcccCCCCEEECCCCC-----HHHHHHHHHHc
Confidence                 356888999999     99999999764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.53  E-value=2e-07  Score=71.73  Aligned_cols=81  Identities=16%  Similarity=0.243  Sum_probs=67.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc--ccCcccccccccceecCCCCCchhH
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EVPVKSVTIRRIPRYLISLGKCSCA  292 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~~  292 (304)
                      ++.+++.++++. ++.+.+.+.+++++||+++  ++++|+++.+|+++....+  ..++.++|.+++.+++++.+     
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~-----   73 (110)
T cd04588           2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQ-----   73 (110)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCC-----
Confidence            456789999998 9999999999999999985  7999999999998754322  24677887778899999999     


Q ss_pred             HHHHHHHHhhc
Q 022005          293 LFRSLSLFSTS  303 (304)
Q Consensus       293 l~~~l~~m~~~  303 (304)
                      +.++++.|+++
T Consensus        74 ~~~~~~~~~~~   84 (110)
T cd04588          74 LYDAIRLMNKH   84 (110)
T ss_pred             HHHHHHHHHhc
Confidence            99999999753

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.53  E-value=1.8e-07  Score=75.75  Aligned_cols=81  Identities=14%  Similarity=0.140  Sum_probs=67.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc---------------------------c
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------------------------D  267 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---------------------------~  267 (304)
                      ++.++++++++. ++++.+.+.+++++||++++ ++++|+++.+|+++....                           .
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
T cd04621           2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV   79 (135)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence            466789999998 99999999999999999864 899999999999864321                           1


Q ss_pred             ccCcccccccccceecCCCCCchhHHHHHHHHHhh
Q 022005          268 EVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFST  302 (304)
Q Consensus       268 ~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~  302 (304)
                      ..++.++|.+++.+++++++     +.++++.|.+
T Consensus        80 ~~~v~~~~~~~~~~v~~~~~-----l~~~~~~~~~  109 (135)
T cd04621          80 PLVAEDIMTEEIITVSPNDD-----VVDAAKLMLE  109 (135)
T ss_pred             cccHHHhcCCCCeEECCCCC-----HHHHHHHHHH
Confidence            23688887778889999999     9999999965

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.53  E-value=1.9e-07  Score=71.85  Aligned_cols=81  Identities=17%  Similarity=0.306  Sum_probs=67.7

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccc---cCcccccccccceecCCCCCchh
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE---VPVKSVTIRRIPRYLISLGKCSC  291 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~---~~v~~~~~~~~~~v~~~~~~~~~  291 (304)
                      ++.++++++++. ++.+.+.+.+++++||+++  ++++|+++.+|+.+....+.   .++.++|.+++.+++++++    
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----   74 (111)
T cd04612           2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDET----   74 (111)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCC----
Confidence            456789999998 9999999999999999985  89999999999986443221   2567777888999999999    


Q ss_pred             HHHHHHHHHhhc
Q 022005          292 ALFRSLSLFSTS  303 (304)
Q Consensus       292 ~l~~~l~~m~~~  303 (304)
                       +.++++.|+++
T Consensus        75 -~~~~~~~~~~~   85 (111)
T cd04612          75 -LRDALKRMAER   85 (111)
T ss_pred             -HHHHHHHHHhC
Confidence             99999999763

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.52  E-value=2.5e-07  Score=71.18  Aligned_cols=80  Identities=15%  Similarity=0.224  Sum_probs=67.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc---cccCcccccccccceecCCCCCchh
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVPVKSVTIRRIPRYLISLGKCSC  291 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~~~~~~~~~v~~~~~~~~~  291 (304)
                      ++.++++++++. ++.+.+.+++++.+||+++  ++++|+++.+|+.+....   ...++.++|.+++.+++++++    
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----   74 (111)
T cd04611           2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTS----   74 (111)
T ss_pred             CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCC----
Confidence            456789999998 9999999999999999975  899999999999865421   245688887788889999999    


Q ss_pred             HHHHHHHHHhh
Q 022005          292 ALFRSLSLFST  302 (304)
Q Consensus       292 ~l~~~l~~m~~  302 (304)
                       +.++++.|++
T Consensus        75 -l~~~l~~~~~   84 (111)
T cd04611          75 -LYDARQLMRE   84 (111)
T ss_pred             -HHHHHHHHHH
Confidence             9999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.50  E-value=2.7e-07  Score=71.30  Aligned_cols=81  Identities=15%  Similarity=0.224  Sum_probs=67.5

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc---cccCcccccccccceecCCCCCchh
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVPVKSVTIRRIPRYLISLGKCSC  291 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~~~~~~~~~v~~~~~~~~~  291 (304)
                      ++.+++.++++. ++.+.+.+.+++++||++++ ++++|+++.+|+++...+   ...++.++|.+++..++++++    
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~----   75 (112)
T cd04624           2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEP----   75 (112)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCc----
Confidence            345789999998 99999999999999999865 899999999999764322   234677887788889999999    


Q ss_pred             HHHHHHHHHhh
Q 022005          292 ALFRSLSLFST  302 (304)
Q Consensus       292 ~l~~~l~~m~~  302 (304)
                       +.++++.|.+
T Consensus        76 -~~~~~~~~~~   85 (112)
T cd04624          76 -VAEAAKLMRK   85 (112)
T ss_pred             -HHHHHHHHHH
Confidence             9999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.50  E-value=3.6e-07  Score=70.02  Aligned_cols=80  Identities=20%  Similarity=0.261  Sum_probs=67.2

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHH
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALF  294 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~  294 (304)
                      ++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+.....  ..++.++|.+++.+++++++     +.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~-----l~   72 (106)
T cd04638           2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDD-----VK   72 (106)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCC-----HH
Confidence            567899999998 89999999999999999865 89999999999976432  23567777778889999999     99


Q ss_pred             HHHHHHhhc
Q 022005          295 RSLSLFSTS  303 (304)
Q Consensus       295 ~~l~~m~~~  303 (304)
                      ++++.|+++
T Consensus        73 ~~~~~~~~~   81 (106)
T cd04638          73 EAAKLMVEN   81 (106)
T ss_pred             HHHHHHHHc
Confidence            999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.50  E-value=2e-07  Score=72.16  Aligned_cols=82  Identities=12%  Similarity=0.171  Sum_probs=67.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC------ccccCcccccccccceecCCCCC
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP------EDEVPVKSVTIRRIPRYLISLGK  288 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~------~~~~~v~~~~~~~~~~v~~~~~~  288 (304)
                      ++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+++...      ....++.++|.+++.+++++++ 
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~-   78 (114)
T cd04629           2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDS-   78 (114)
T ss_pred             CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCc-
Confidence            456789999998 99999998899999999864 79999999999986321      1245788887778888999999 


Q ss_pred             chhHHHHHHHHHhhc
Q 022005          289 CSCALFRSLSLFSTS  303 (304)
Q Consensus       289 ~~~~l~~~l~~m~~~  303 (304)
                          +.++++.|.++
T Consensus        79 ----l~~~~~~~~~~   89 (114)
T cd04629          79 ----IVDLAQLMLKA   89 (114)
T ss_pred             ----HHHHHHHHHHh
Confidence                99999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.49  E-value=3.1e-07  Score=70.84  Aligned_cols=81  Identities=17%  Similarity=0.213  Sum_probs=67.7

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC-Cc---cccCcccccccccceecCCCCCch
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-PE---DEVPVKSVTIRRIPRYLISLGKCS  290 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~-~~---~~~~v~~~~~~~~~~v~~~~~~~~  290 (304)
                      ++.+++.++++. ++.+.+.+.+++++||+++  ++++|+++.+|++... ..   .+.++.++|.+++.+++++++   
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~---   75 (111)
T cd04800           2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDAT---   75 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCc---
Confidence            566789999998 9999999999999999985  8999999999987531 11   234678887788999999999   


Q ss_pred             hHHHHHHHHHhhc
Q 022005          291 CALFRSLSLFSTS  303 (304)
Q Consensus       291 ~~l~~~l~~m~~~  303 (304)
                        +.++++.|+++
T Consensus        76 --l~~~~~~~~~~   86 (111)
T cd04800          76 --VFEALLLMLER   86 (111)
T ss_pred             --HHHHHHHHHHc
Confidence              99999999764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.49  E-value=2.5e-07  Score=73.46  Aligned_cols=82  Identities=12%  Similarity=0.228  Sum_probs=67.7

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC-----------------ccccCccccccc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----------------EDEVPVKSVTIR  277 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~-----------------~~~~~v~~~~~~  277 (304)
                      ++.++++++++. ++.+.+.+.+++.+||++++ ++++|+++.+|+.....                 ....++.++|.+
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (128)
T cd04632           2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS   79 (128)
T ss_pred             CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence            456789999998 99999999999999999865 89999999999874321                 012357788778


Q ss_pred             ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          278 RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       278 ~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++.+++++++     +.++++.|.++
T Consensus        80 ~~~~v~~~~~-----l~~~l~~~~~~  100 (128)
T cd04632          80 PVITASPNDS-----VRDAVDRMLEN  100 (128)
T ss_pred             CCceECCCCc-----HHHHHHHHHhC
Confidence            8899999999     99999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.48  E-value=3.2e-07  Score=71.40  Aligned_cols=82  Identities=16%  Similarity=0.212  Sum_probs=67.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----cccCcccccccccceecCCCCCch
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRYLISLGKCS  290 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~~~~~~v~~~~~~~~  290 (304)
                      ++.++++++++. ++.+.+.+.+++++||++++ |+++|+++.+|+.+...+    ...++.++|.+++.+++++++   
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---   76 (115)
T cd04593           2 PPPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEP---   76 (115)
T ss_pred             CCcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCC---
Confidence            345688999998 99999999999999999864 899999999999864322    123477887788999999999   


Q ss_pred             hHHHHHHHHHhhc
Q 022005          291 CALFRSLSLFSTS  303 (304)
Q Consensus       291 ~~l~~~l~~m~~~  303 (304)
                        +.++++.|+++
T Consensus        77 --l~~~l~~~~~~   87 (115)
T cd04593          77 --LAHALDRMASR   87 (115)
T ss_pred             --HHHHHHHHHHc
Confidence              99999999764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.48  E-value=3.8e-07  Score=72.35  Aligned_cols=82  Identities=18%  Similarity=0.215  Sum_probs=65.9

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcccc-----------------Cccccccc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV-----------------PVKSVTIR  277 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~-----------------~v~~~~~~  277 (304)
                      ++.++++++++. ++++.+.+++++++||++++ |+++|+++.+|+++...++..                 ...+.|.+
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04642           2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR   79 (126)
T ss_pred             CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence            567899999998 99999999999999999865 899999999999875422111                 11234567


Q ss_pred             ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          278 RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       278 ~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++.+++++++     +.++++.|.++
T Consensus        80 ~~~~v~~~~~-----l~~a~~~~~~~  100 (126)
T cd04642          80 PLITCTPSST-----LKEVITKLVAN  100 (126)
T ss_pred             CCeEECCCCc-----HHHHHHHHHHh
Confidence            8889999999     99999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.48  E-value=2.6e-07  Score=73.95  Aligned_cols=81  Identities=14%  Similarity=0.232  Sum_probs=66.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc----c--------------------cC
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED----E--------------------VP  270 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~----~--------------------~~  270 (304)
                      ++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+.+.....    .                    .+
T Consensus         2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (132)
T cd04636           2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK   79 (132)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence            456789999998 99999999999999999864 8999999999997643211    1                    16


Q ss_pred             cccccccccceecCCCCCchhHHHHHHHHHhh
Q 022005          271 VKSVTIRRIPRYLISLGKCSCALFRSLSLFST  302 (304)
Q Consensus       271 v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~  302 (304)
                      +.++|.+++..++++++     +.++++.|.+
T Consensus        80 v~~~~~~~~~~v~~~~~-----l~~~~~~~~~  106 (132)
T cd04636          80 VEEIMTKKVITVDEDTT-----IEDVARIMSK  106 (132)
T ss_pred             HHHhccCCceEECCCCc-----HHHHHHHHHH
Confidence            77887788899999999     9999999965

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.47  E-value=4e-07  Score=89.29  Aligned_cols=81  Identities=14%  Similarity=0.173  Sum_probs=68.3

Q ss_pred             EEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEechhcccCCccccCccccccc--ccceecCCCCCchhH
Q 022005          217 FAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIR--RIPRYLISLGKCSCA  292 (304)
Q Consensus       217 ~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~  292 (304)
                      .++++++|+. ++++.+.+++++.+||++++  .++++|+|+.+|+.......+.+++++|.+  ++.+++++.+     
T Consensus       108 ~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dIMt~~~~~itv~~d~~-----  181 (502)
T PRK07107        108 SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTPFEKLVTANEGTT-----  181 (502)
T ss_pred             CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHHhCCCCCeEEECCCCc-----
Confidence            5899999999 99999999999999999852  479999999999975432335679999765  6778899999     


Q ss_pred             HHHHHHHHhhc
Q 022005          293 LFRSLSLFSTS  303 (304)
Q Consensus       293 l~~~l~~m~~~  303 (304)
                      +.++++.|+++
T Consensus       182 l~eAl~lM~e~  192 (502)
T PRK07107        182 LKEANDIIWDH  192 (502)
T ss_pred             HHHHHHHHHHc
Confidence            99999999764

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.47  E-value=3.2e-07  Score=70.73  Aligned_cols=83  Identities=34%  Similarity=0.479  Sum_probs=67.9

Q ss_pred             ceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccc--cCcccccccccceecCCCCCchh
Q 022005          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE--VPVKSVTIRRIPRYLISLGKCSC  291 (304)
Q Consensus       214 ~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~--~~v~~~~~~~~~~v~~~~~~~~~  291 (304)
                      +++.++++++++. ++.+.+.+.+++.+||++++.++++|+++.+|+++...++.  .++.++ ++++.+++++++    
T Consensus         1 ~~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~----   74 (111)
T cd04590           1 TDIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTP----   74 (111)
T ss_pred             CceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCc----
Confidence            3677899999998 99999999999999999754378999999999987543221  346665 578889999999    


Q ss_pred             HHHHHHHHHhhc
Q 022005          292 ALFRSLSLFSTS  303 (304)
Q Consensus       292 ~l~~~l~~m~~~  303 (304)
                       +.++++.|.++
T Consensus        75 -l~~~~~~~~~~   85 (111)
T cd04590          75 -LDDLLEEMRKE   85 (111)
T ss_pred             -HHHHHHHHHhc
Confidence             99999999863

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.47  E-value=4.4e-07  Score=89.04  Aligned_cols=100  Identities=10%  Similarity=0.243  Sum_probs=79.5

Q ss_pred             hHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEechhcccCCcc
Q 022005          190 DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPED  267 (304)
Q Consensus       190 ~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~~~  267 (304)
                      ++.+.++++.     ++++.|++  +++++++++|+. ++.+.+.+++++++||++++  .++++|+|+.+|+.... ..
T Consensus        87 ~~~~~v~kvk-----~~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~~  157 (495)
T PTZ00314         87 EQVEEVRKVK-----RFENGFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-DK  157 (495)
T ss_pred             HHHHHHhhcc-----cccccccc--CCeecCCCCCHH-HHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-cC
Confidence            3455666655     34557764  667899999998 99999999999999999863  37899999999997433 23


Q ss_pred             ccCccccccc--ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          268 EVPVKSVTIR--RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       268 ~~~v~~~~~~--~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ..+++++|.+  ++.+++++++     +.++++.|+++
T Consensus       158 ~~~V~diMt~~~~lvtv~~~~s-----l~eAl~lm~e~  190 (495)
T PTZ00314        158 STPVSEVMTPREKLVVGNTPIS-----LEEANEVLRES  190 (495)
T ss_pred             CCCHHHhhCCcCCceEeCCCCC-----HHHHHHHHHHc
Confidence            4679999765  6888999999     99999999764

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.47  E-value=3.8e-07  Score=71.58  Aligned_cols=82  Identities=15%  Similarity=0.280  Sum_probs=67.3

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC-------------ccccCcccccccccce
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-------------EDEVPVKSVTIRRIPR  281 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~-------------~~~~~v~~~~~~~~~~  281 (304)
                      ++.++++++++. ++.+.+.+.+++++||+++ .|+++|+++.+|+++...             ....++.++|.+++..
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (122)
T cd04635           2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS   79 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence            567899999998 9999999999999999975 489999999999976310             0234577787778889


Q ss_pred             ecCCCCCchhHHHHHHHHHhhc
Q 022005          282 YLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       282 v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++++     +.++++.|+++
T Consensus        80 v~~~~~-----l~~~~~~~~~~   96 (122)
T cd04635          80 VTPDDS-----IATAVELMLEH   96 (122)
T ss_pred             ECCCCC-----HHHHHHHHHHc
Confidence            999999     99999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.46  E-value=5.7e-07  Score=68.50  Aligned_cols=79  Identities=16%  Similarity=0.278  Sum_probs=67.0

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHH
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALF  294 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~  294 (304)
                      ++.++++++++. ++++.+.+++++++||++ + ++++|+++.+|+.+...  ..++.++|..++.+++++++     +.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~-----l~   71 (105)
T cd04599           2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEAS-----LL   71 (105)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCC-----HH
Confidence            456789999998 999999999999999997 3 79999999999987543  34678887778889999999     99


Q ss_pred             HHHHHHhhc
Q 022005          295 RSLSLFSTS  303 (304)
Q Consensus       295 ~~l~~m~~~  303 (304)
                      ++++.|.++
T Consensus        72 ~~~~~~~~~   80 (105)
T cd04599          72 EAKRLMEEK   80 (105)
T ss_pred             HHHHHHHHc
Confidence            999999754

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.45  E-value=3.8e-07  Score=70.26  Aligned_cols=81  Identities=19%  Similarity=0.254  Sum_probs=68.4

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc--cccCcccccccccceecCCCCCchhH
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRYLISLGKCSCA  292 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~~~~~~~~~v~~~~~~~~~~  292 (304)
                      ++.+++.++++. ++.+.+.+.+++++||+++  ++++|+++.+|+.+....  ...++.++|.+++.+++++++     
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----   74 (110)
T cd04595           3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTP-----   74 (110)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCc-----
Confidence            566889999998 9999999899999999985  799999999998764321  235788888788999999999     


Q ss_pred             HHHHHHHHhhc
Q 022005          293 LFRSLSLFSTS  303 (304)
Q Consensus       293 l~~~l~~m~~~  303 (304)
                      +.++++.|+++
T Consensus        75 l~~~~~~~~~~   85 (110)
T cd04595          75 LSEVQELMVEH   85 (110)
T ss_pred             HHHHHHHHHHc
Confidence            99999999754

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.45  E-value=5.1e-07  Score=69.18  Aligned_cols=80  Identities=15%  Similarity=0.227  Sum_probs=67.5

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHH
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALF  294 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~  294 (304)
                      ++..+++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+...... ..++.++|.+++.+++++++     +.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~-~~~v~~~~~~~~~~v~~~~~-----~~   74 (109)
T cd04583           3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYKE-AKSLEDIMLEDVFTVQPDAS-----LR   74 (109)
T ss_pred             CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhhc-CCcHhHhhcCCceEECCCCc-----HH
Confidence            456789999998 99999999999999999864 899999999999765322 34678887788889999999     99


Q ss_pred             HHHHHHhh
Q 022005          295 RSLSLFST  302 (304)
Q Consensus       295 ~~l~~m~~  302 (304)
                      ++++.|++
T Consensus        75 ~~~~~~~~   82 (109)
T cd04583          75 DVLGLVLK   82 (109)
T ss_pred             HHHHHHHH
Confidence            99999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.44  E-value=6.4e-07  Score=68.58  Aligned_cols=75  Identities=15%  Similarity=0.192  Sum_probs=64.5

Q ss_pred             EEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHHHHH
Q 022005          218 AIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSL  297 (304)
Q Consensus       218 ~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l  297 (304)
                      ++++++++. ++++.+.+.+++++||+++  ++++|+++.+|+.+...   .++.++|.+++.+++++.+     +.+++
T Consensus         5 ~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~-----l~~a~   73 (104)
T cd04594           5 KVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTST-----AEEAW   73 (104)
T ss_pred             EECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCC-----HHHHH
Confidence            688999998 9999999999999999984  89999999999986432   2467777778899999999     99999


Q ss_pred             HHHhhc
Q 022005          298 SLFSTS  303 (304)
Q Consensus       298 ~~m~~~  303 (304)
                      +.|+++
T Consensus        74 ~~~~~~   79 (104)
T cd04594          74 EVMMKN   79 (104)
T ss_pred             HHHHHc
Confidence            999764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.44  E-value=6.5e-07  Score=68.39  Aligned_cols=79  Identities=10%  Similarity=0.033  Sum_probs=65.3

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHH
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALF  294 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~  294 (304)
                      ++.++++++++. ++.+.+.+.+++++||++++ |+++|+++.+|+++...   .++.++|.+++..++++++     +.
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~-----~~   71 (106)
T cd04582           2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDD-----LR   71 (106)
T ss_pred             CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCC-----HH
Confidence            456789999998 89999999999999999754 89999999999986532   2467886556677899999     99


Q ss_pred             HHHHHHhhc
Q 022005          295 RSLSLFSTS  303 (304)
Q Consensus       295 ~~l~~m~~~  303 (304)
                      ++++.|.++
T Consensus        72 ~~~~~~~~~   80 (106)
T cd04582          72 IVLSRMFAH   80 (106)
T ss_pred             HHHHHHHHC
Confidence            999999764

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.44  E-value=4.6e-07  Score=69.90  Aligned_cols=81  Identities=17%  Similarity=0.218  Sum_probs=67.2

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC----ccccCcccccccccceecCCCCCch
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP----EDEVPVKSVTIRRIPRYLISLGKCS  290 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~----~~~~~v~~~~~~~~~~v~~~~~~~~  290 (304)
                      ++++++.++++. ++++.+.+.+++++||+++  ++++|+++.+|+.+...    ..+.++.++|.++...++++++   
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~---   75 (111)
T cd04589           2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDF---   75 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCc---
Confidence            345789999998 9999999999999999985  78999999999876431    1235688887778889999999   


Q ss_pred             hHHHHHHHHHhhc
Q 022005          291 CALFRSLSLFSTS  303 (304)
Q Consensus       291 ~~l~~~l~~m~~~  303 (304)
                        +.++++.|+++
T Consensus        76 --l~~~~~~~~~~   86 (111)
T cd04589          76 --LFNALLLMTRH   86 (111)
T ss_pred             --HHHHHHHHHHh
Confidence              99999999764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.44  E-value=4e-07  Score=73.16  Aligned_cols=82  Identities=17%  Similarity=0.233  Sum_probs=67.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC--------------------------ccc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP--------------------------EDE  268 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~--------------------------~~~  268 (304)
                      ++.++++++++. ++.+.+.++++.++||++++ ++++|+++.+|+++...                          ...
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            567899999998 99999999999999999854 89999999999875321                          123


Q ss_pred             cCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          269 VPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       269 ~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .++.++|.+++..++++++     +.++++.|+++
T Consensus        81 ~~v~~~~~~~~~~v~~~~~-----~~~~~~~~~~~  110 (135)
T cd04586          81 RKVADVMTRPVVTVGEDTP-----LAEVAELMEEH  110 (135)
T ss_pred             CCHHHHhCCCceEeCCCCc-----HHHHHHHHHHc
Confidence            4677887677889999999     99999999753

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.43  E-value=5e-07  Score=69.87  Aligned_cols=80  Identities=14%  Similarity=0.235  Sum_probs=66.9

Q ss_pred             EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC-Cc---cccCcccccccccceecCCCCCchh
Q 022005          216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-PE---DEVPVKSVTIRRIPRYLISLGKCSC  291 (304)
Q Consensus       216 v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~-~~---~~~~v~~~~~~~~~~v~~~~~~~~~  291 (304)
                      +..+++++++. ++.+.+.+++++++||++++ ++++|+++.+|+.+.. ..   ...++.++|.+++.+++++++    
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~----   76 (113)
T cd04615           3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDS----   76 (113)
T ss_pred             CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCc----
Confidence            45689999998 99999999999999999864 8999999999997632 11   234678887788899999999    


Q ss_pred             HHHHHHHHHhh
Q 022005          292 ALFRSLSLFST  302 (304)
Q Consensus       292 ~l~~~l~~m~~  302 (304)
                       +.++++.|++
T Consensus        77 -l~~~~~~~~~   86 (113)
T cd04615          77 -IAKARWLMSN   86 (113)
T ss_pred             -HHHHHHHHHH
Confidence             9999999965

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.43  E-value=6.4e-07  Score=87.99  Aligned_cols=100  Identities=13%  Similarity=0.184  Sum_probs=79.4

Q ss_pred             hHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEechhcccCCcc
Q 022005          190 DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPED  267 (304)
Q Consensus       190 ~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~~~  267 (304)
                      +.++.++.+.+.     +..|++  +++++++++|+. ++.+.+.+++++.+||++++  .++++|+|+.+|+.... ..
T Consensus        91 ~q~~~Irkvk~~-----~~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~~  161 (505)
T PLN02274         91 EQAAIVRKAKSR-----RVGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-DR  161 (505)
T ss_pred             HHHHHHHHhhcc-----cccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-cc
Confidence            445667777643     233664  778999999998 99999999999999999863  37999999999996543 33


Q ss_pred             ccCcccccccc--cceecCCCCCchhHHHHHHHHHhhc
Q 022005          268 EVPVKSVTIRR--IPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       268 ~~~v~~~~~~~--~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +.++.++|.++  +.+++++.+     +.++++.|+++
T Consensus       162 ~~~V~eIMt~~~~lvtv~~~~s-----L~eAl~~m~~~  194 (505)
T PLN02274        162 ETKLSEVMTSDDDLVTAPAGID-----LEEAEAVLKDS  194 (505)
T ss_pred             CCcHHHHhccCCCcEEECCCCC-----HHHHHHHHHHc
Confidence            56799997655  678999999     99999999764

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.42  E-value=4.5e-07  Score=70.43  Aligned_cols=82  Identities=18%  Similarity=0.218  Sum_probs=64.5

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcC-CceeeeeeCCCCcEEEEEEechhcccCCc--cccCccccccc--ccceecCCCCCc
Q 022005          215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIR--RIPRYLISLGKC  289 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~-~sr~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~~~~~--~~~~v~~~~~~~  289 (304)
                      ++.++++++++. ++.+.+.+++ ++++||++++ ++++|+++.+|++....+  ...++.++|..  ++..++++++  
T Consensus         2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~--   77 (114)
T cd04801           2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEES--   77 (114)
T ss_pred             CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCc--
Confidence            456789999998 8999887665 8999999864 899999999999875432  23467888532  2457889999  


Q ss_pred             hhHHHHHHHHHhhc
Q 022005          290 SCALFRSLSLFSTS  303 (304)
Q Consensus       290 ~~~l~~~l~~m~~~  303 (304)
                         +.++++.|+++
T Consensus        78 ---l~~a~~~~~~~   88 (114)
T cd04801          78 ---LAEVLKLLEEQ   88 (114)
T ss_pred             ---HHHHHHHHHHC
Confidence               99999999764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.42  E-value=5.8e-07  Score=70.13  Aligned_cols=81  Identities=16%  Similarity=0.267  Sum_probs=67.3

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc--------------cccCcccccccccc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP  280 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--------------~~~~v~~~~~~~~~  280 (304)
                      ++.++++++++. ++.+.+.+.+++++||+++  ++++|+++.+|+......              ...++.++|.+++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04585           2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI   78 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence            456789999999 9999999999999999985  899999999999864321              12457778777889


Q ss_pred             eecCCCCCchhHHHHHHHHHhhc
Q 022005          281 RYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       281 ~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++++++     +.++++.|+++
T Consensus        79 ~v~~~~~-----l~~~~~~~~~~   96 (122)
T cd04585          79 TVSPDAS-----VEEAAELMLER   96 (122)
T ss_pred             EeCCCCc-----HHHHHHHHHHc
Confidence            9999999     99999999753

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.42  E-value=4.3e-07  Score=71.05  Aligned_cols=82  Identities=18%  Similarity=0.272  Sum_probs=67.4

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC-------------ccccCcccccccccce
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-------------EDEVPVKSVTIRRIPR  281 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~-------------~~~~~v~~~~~~~~~~  281 (304)
                      ++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+.+...             ....++.++|.+++.+
T Consensus         2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (121)
T cd04584           2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT   79 (121)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence            456789999998 99999999999999999865 89999999999875321             1124677887788889


Q ss_pred             ecCCCCCchhHHHHHHHHHhhc
Q 022005          282 YLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       282 v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++++     +.++++.|+++
T Consensus        80 i~~~~~-----l~~~~~~~~~~   96 (121)
T cd04584          80 VHPLDT-----VEEAALLMREH   96 (121)
T ss_pred             ECCCCc-----HHHHHHHHHHc
Confidence            999999     99999998653

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.41  E-value=8.7e-07  Score=67.72  Aligned_cols=79  Identities=14%  Similarity=0.367  Sum_probs=66.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHH
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALF  294 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~  294 (304)
                      ++.+++.+.++. ++.+.+.+.+++++||+++  ++++|+++.+|++...  ...++.++|..++.+++++++     +.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~-----l~   72 (107)
T cd04610           3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD--PDETVEEIMSKDLVVAVPEMD-----IM   72 (107)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC--ccccHHHhCCCCCeEECCCCC-----HH
Confidence            567899999998 9999998889999999974  8999999999998642  234688887777888999999     99


Q ss_pred             HHHHHHhhc
Q 022005          295 RSLSLFSTS  303 (304)
Q Consensus       295 ~~l~~m~~~  303 (304)
                      ++++.|+++
T Consensus        73 ~~~~~~~~~   81 (107)
T cd04610          73 DAARVMFRT   81 (107)
T ss_pred             HHHHHHHHh
Confidence            999999753

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.40  E-value=6.1e-07  Score=71.43  Aligned_cols=79  Identities=20%  Similarity=0.289  Sum_probs=67.2

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC----CccccCcccccccccceecCCCCCch
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----PEDEVPVKSVTIRRIPRYLISLGKCS  290 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~----~~~~~~v~~~~~~~~~~v~~~~~~~~  290 (304)
                      ++.++++++++. ++.+.+.+++++.+||++++ ++++|+++.+|+++..    .....++.++|.+++.++.++++   
T Consensus         3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~---   77 (124)
T cd04608           3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDT---   77 (124)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCC---
Confidence            567899999998 99999999999999999864 7999999999998532    12346899999999999999999   


Q ss_pred             hHHHHHHHHH
Q 022005          291 CALFRSLSLF  300 (304)
Q Consensus       291 ~~l~~~l~~m  300 (304)
                        +.++.+.|
T Consensus        78 --~~~v~~~~   85 (124)
T cd04608          78 --LGKLSRIL   85 (124)
T ss_pred             --HHHHHhhc
Confidence              99888755

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.39  E-value=9.7e-07  Score=67.71  Aligned_cols=81  Identities=20%  Similarity=0.303  Sum_probs=65.6

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecC-CCCCchhHH
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLI-SLGKCSCAL  293 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~-~~~~~~~~l  293 (304)
                      ++.+++.+.++. ++.+.+.+++++++||++++ |+++|+++.+|+..... .+.++.++|.+++.++.. +++     +
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~-----l   74 (110)
T cd04601           3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTS-----L   74 (110)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCC-----H
Confidence            456789999998 89999999999999999865 89999999999875433 345788886555666665 888     9


Q ss_pred             HHHHHHHhhc
Q 022005          294 FRSLSLFSTS  303 (304)
Q Consensus       294 ~~~l~~m~~~  303 (304)
                      .++++.|+++
T Consensus        75 ~~~~~~~~~~   84 (110)
T cd04601          75 EEALELLHEH   84 (110)
T ss_pred             HHHHHHHHHh
Confidence            9999999764

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.39  E-value=3.5e-07  Score=71.84  Aligned_cols=81  Identities=10%  Similarity=0.162  Sum_probs=66.9

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc--------------cccCcccccccccc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP  280 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--------------~~~~v~~~~~~~~~  280 (304)
                      ++.++++++++. ++.+.+.+.+++++||+++  ++++|+++.+|+.+....              ...++.++|.+++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04637           2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI   78 (122)
T ss_pred             CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence            567899999998 9999999999999999985  799999999998753210              12357787778889


Q ss_pred             eecCCCCCchhHHHHHHHHHhhc
Q 022005          281 RYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       281 ~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++++++     +.++++.|+++
T Consensus        79 ~v~~~~~-----l~~~~~~~~~~   96 (122)
T cd04637          79 TVSPDTP-----VDEASKLLLEN   96 (122)
T ss_pred             eeCCCCc-----HHHHHHHHHHc
Confidence            9999999     99999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.39  E-value=5.7e-07  Score=69.38  Aligned_cols=77  Identities=16%  Similarity=0.159  Sum_probs=64.8

Q ss_pred             ceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchh
Q 022005          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSC  291 (304)
Q Consensus       214 ~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~  291 (304)
                      .+...++++++++ ++.+.+.+++++++||+++.  .++++|+++.+|+.+...+       +|.+++.+++++++    
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~----   69 (105)
T cd04591           2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTS----   69 (105)
T ss_pred             CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCc----
Confidence            3567899999998 89999999999999999862  3789999999999764422       66778889999999    


Q ss_pred             HHHHHHHHHhhc
Q 022005          292 ALFRSLSLFSTS  303 (304)
Q Consensus       292 ~l~~~l~~m~~~  303 (304)
                       +.++++.|+++
T Consensus        70 -l~~~~~~~~~~   80 (105)
T cd04591          70 -LEKVHQLFRKL   80 (105)
T ss_pred             -HHHHHHHHHHc
Confidence             99999999753

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.38  E-value=6.2e-07  Score=70.78  Aligned_cols=83  Identities=18%  Similarity=0.213  Sum_probs=64.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc--c-----------cCcccccccccce
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--E-----------VPVKSVTIRRIPR  281 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~--~-----------~~v~~~~~~~~~~  281 (304)
                      ++.++++++++. ++++.+.+++++++||++++.++++|+++.+|+++....+  .           ....++|.+++.+
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T cd04627           2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS   80 (123)
T ss_pred             CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence            456789999998 9999999999999999986337899999999987642110  0           1112355677889


Q ss_pred             ecCCCCCchhHHHHHHHHHhhc
Q 022005          282 YLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       282 v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++++     +.++++.|.++
T Consensus        81 v~~~~~-----l~~a~~~m~~~   97 (123)
T cd04627          81 INGDQP-----LIDALHLMHNE   97 (123)
T ss_pred             eCCCCC-----HHHHHHHHHHc
Confidence            999999     99999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.38  E-value=8.1e-07  Score=68.58  Aligned_cols=81  Identities=17%  Similarity=0.172  Sum_probs=66.1

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC--C--ccc-cCcccccccccceecCCCCCc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH--P--EDE-VPVKSVTIRRIPRYLISLGKC  289 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~--~--~~~-~~v~~~~~~~~~~v~~~~~~~  289 (304)
                      ++.+++++++++ ++.+.+.+++++++||.++  ++++|+++.+|++...  .  ... .++.++|.+++.+++++++  
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~--   76 (113)
T cd04587           2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTP--   76 (113)
T ss_pred             CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCC--
Confidence            466789999998 8999999999999999984  8999999999987421  1  111 4678887778888999999  


Q ss_pred             hhHHHHHHHHHhhc
Q 022005          290 SCALFRSLSLFSTS  303 (304)
Q Consensus       290 ~~~l~~~l~~m~~~  303 (304)
                         +.++++.|.++
T Consensus        77 ---l~~~~~~~~~~   87 (113)
T cd04587          77 ---VLEALHLMVQG   87 (113)
T ss_pred             ---HHHHHHHHHHc
Confidence               99999999753

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.38  E-value=5.6e-07  Score=69.50  Aligned_cols=81  Identities=16%  Similarity=0.143  Sum_probs=67.0

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----cccCcccccccccceecCCCCCch
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRYLISLGKCS  290 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~~~~~~v~~~~~~~~  290 (304)
                      ++.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+.+....    ...++.++|.+++.+++++++   
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~---   77 (114)
T cd04604           3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDAL---   77 (114)
T ss_pred             cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCc---
Confidence            455788999998 99999998899999999864 899999999998764321    124688887778888999999   


Q ss_pred             hHHHHHHHHHhh
Q 022005          291 CALFRSLSLFST  302 (304)
Q Consensus       291 ~~l~~~l~~m~~  302 (304)
                        +.++++.|.+
T Consensus        78 --~~~~~~~~~~   87 (114)
T cd04604          78 --AAEALELMEE   87 (114)
T ss_pred             --HHHHHHHHHH
Confidence              9999999965

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.36  E-value=1.1e-06  Score=68.15  Aligned_cols=82  Identities=15%  Similarity=0.103  Sum_probs=66.9

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC---ccccCcccccccccceecCCCCCchh
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRIPRYLISLGKCSC  291 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~---~~~~~v~~~~~~~~~~v~~~~~~~~~  291 (304)
                      +.+++++++++. ++.+.+.+.+++.+||++++ ++++|+++.+|+++...   ....++.++|..++..++++++    
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~----   76 (113)
T cd04607           3 KQLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSS----   76 (113)
T ss_pred             cceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCC----
Confidence            346789999998 99999998999999999864 89999999999875321   1234688887667888999999    


Q ss_pred             HHHHHHHHHhhc
Q 022005          292 ALFRSLSLFSTS  303 (304)
Q Consensus       292 ~l~~~l~~m~~~  303 (304)
                       +.++++.|.++
T Consensus        77 -l~~~~~~~~~~   87 (113)
T cd04607          77 -REEILALMRER   87 (113)
T ss_pred             -HHHHHHHHHHC
Confidence             99999999764

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.36  E-value=1.1e-06  Score=67.84  Aligned_cols=81  Identities=20%  Similarity=0.251  Sum_probs=66.6

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC--C---ccccCcccccccccceecCCCCCc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH--P---EDEVPVKSVTIRRIPRYLISLGKC  289 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~--~---~~~~~v~~~~~~~~~~v~~~~~~~  289 (304)
                      ++.++++++++. ++++.+.+++++.+||+++  ++++|+++.+|+++..  .   ....++.++|.+++.+++++++  
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--   76 (112)
T cd04802           2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNAS--   76 (112)
T ss_pred             CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCC--
Confidence            456789999998 8999999999999999985  4999999999998642  1   1234678887677888999999  


Q ss_pred             hhHHHHHHHHHhhc
Q 022005          290 SCALFRSLSLFSTS  303 (304)
Q Consensus       290 ~~~l~~~l~~m~~~  303 (304)
                         +.++++.|.++
T Consensus        77 ---l~~~~~~~~~~   87 (112)
T cd04802          77 ---LNEAAKLMAKH   87 (112)
T ss_pred             ---HHHHHHHHHHc
Confidence               99999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.36  E-value=8.7e-07  Score=69.45  Aligned_cols=82  Identities=15%  Similarity=0.213  Sum_probs=66.7

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----cccCccccccc--ccceecCCCCC
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIR--RIPRYLISLGK  288 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~~--~~~~v~~~~~~  288 (304)
                      ++.++++++++. ++.+.+.+++.+.+||.+++ ++++|+++.+|+.+....    ...++.++|.+  ++.+++++++ 
T Consensus         2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-   78 (118)
T cd04617           2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEES-   78 (118)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCc-
Confidence            456899999998 89999999999999999864 789999999998764321    13456777654  6789999999 


Q ss_pred             chhHHHHHHHHHhhc
Q 022005          289 CSCALFRSLSLFSTS  303 (304)
Q Consensus       289 ~~~~l~~~l~~m~~~  303 (304)
                          +.++++.|.++
T Consensus        79 ----l~~~~~~~~~~   89 (118)
T cd04617          79 ----VLEAAKKLIEH   89 (118)
T ss_pred             ----HHHHHHHHHHc
Confidence                99999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.35  E-value=9.3e-07  Score=67.70  Aligned_cols=80  Identities=19%  Similarity=0.268  Sum_probs=66.5

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc----ccCcccccccccceecCCCCCch
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED----EVPVKSVTIRRIPRYLISLGKCS  290 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~----~~~v~~~~~~~~~~v~~~~~~~~  290 (304)
                      ++.++++++++. ++.+.+.+++++++||+++  ++++|+++.+|+.+.....    ..++.++|.+++..++++++   
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---   75 (110)
T cd04609           2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAP---   75 (110)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCc---
Confidence            456789999998 9999999999999999985  7999999999998753221    24677787777888999999   


Q ss_pred             hHHHHHHHHHhh
Q 022005          291 CALFRSLSLFST  302 (304)
Q Consensus       291 ~~l~~~l~~m~~  302 (304)
                        +.++++.|++
T Consensus        76 --l~~~~~~~~~   85 (110)
T cd04609          76 --IEELSELLDR   85 (110)
T ss_pred             --HHHHHHHHHh
Confidence              9999998875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.35  E-value=1.5e-06  Score=67.04  Aligned_cols=80  Identities=14%  Similarity=0.241  Sum_probs=65.9

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc-cCC----ccccCcccccccccceecCCCCCc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT-IHP----EDEVPVKSVTIRRIPRYLISLGKC  289 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~-~~~----~~~~~v~~~~~~~~~~v~~~~~~~  289 (304)
                      ++.++++++++. ++.+.+.+.+++.+||+++  ++++|+++.+|++. ...    ....++.++|.+.+.+++++++  
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--   76 (113)
T cd04622           2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDD--   76 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCC--
Confidence            456789999998 9999999999999999985  89999999999863 111    1123488887788889999999  


Q ss_pred             hhHHHHHHHHHhh
Q 022005          290 SCALFRSLSLFST  302 (304)
Q Consensus       290 ~~~l~~~l~~m~~  302 (304)
                         +.++++.|++
T Consensus        77 ---~~~~~~~~~~   86 (113)
T cd04622          77 ---VDEAARLMRE   86 (113)
T ss_pred             ---HHHHHHHHHH
Confidence               9999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.33  E-value=9.1e-07  Score=69.05  Aligned_cols=81  Identities=14%  Similarity=0.124  Sum_probs=66.3

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcC-CceeeeeeCCCCcEEEEEEechhcccCCc-------cccCcccccccccceecCCC
Q 022005          215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE-------DEVPVKSVTIRRIPRYLISL  286 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~-~sr~PV~~~~~~~ivGiv~~kDll~~~~~-------~~~~v~~~~~~~~~~v~~~~  286 (304)
                      ++.++++++++. ++.+.+.+.+ ++++||+++  ++++|+++.+|+.+....       .+.++.++|.+++..+++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~   78 (119)
T cd04598           2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT   78 (119)
T ss_pred             CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence            345688999998 9999998877 899999986  899999999998754221       23568888777888999999


Q ss_pred             CCchhHHHHHHHHHhhc
Q 022005          287 GKCSCALFRSLSLFSTS  303 (304)
Q Consensus       287 ~~~~~~l~~~l~~m~~~  303 (304)
                      +     +.++++.|.++
T Consensus        79 ~-----~~~~~~~~~~~   90 (119)
T cd04598          79 P-----LEEVSRLATGR   90 (119)
T ss_pred             C-----HHHHHHHHHcC
Confidence            9     99999998653

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.33  E-value=8.5e-07  Score=72.29  Aligned_cols=81  Identities=11%  Similarity=0.247  Sum_probs=66.7

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----------------------------
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----------------------------  266 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----------------------------  266 (304)
                      +++++++++++. ++.+.+.+.+++.+||+++  ++++|+++.+|+++....                            
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (143)
T cd04634           2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE   78 (143)
T ss_pred             CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence            467899999998 9999999999999999985  799999999998753210                            


Q ss_pred             --------cccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          267 --------DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       267 --------~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                              ...++.++|.+++..++++++     +.++++.|+++
T Consensus        79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~-----l~~a~~~~~~~  118 (143)
T cd04634          79 TKRALTDAGKMKVRDIMTKKVITISPDAS-----IEDAAELMVRH  118 (143)
T ss_pred             HHHHHHHHhcCCHHHHcCCCCeEECCCCc-----HHHHHHHHHHc
Confidence                    123566777788899999999     99999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.33  E-value=1.3e-06  Score=68.36  Aligned_cols=80  Identities=16%  Similarity=0.285  Sum_probs=66.5

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc--------------cccCcccccccccc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEVPVKSVTIRRIP  280 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--------------~~~~v~~~~~~~~~  280 (304)
                      ++.++++++++. ++.+.+.+.+++++||+++  |+++|+++.+|+.+....              ...++.++|.+++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (121)
T cd04633           2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI   78 (121)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence            456789999998 9999999999999999985  899999999998764221              13467777778889


Q ss_pred             eecCCCCCchhHHHHHHHHHhh
Q 022005          281 RYLISLGKCSCALFRSLSLFST  302 (304)
Q Consensus       281 ~v~~~~~~~~~~l~~~l~~m~~  302 (304)
                      +++++++     +.++++.|++
T Consensus        79 ~v~~~~~-----l~~~~~~~~~   95 (121)
T cd04633          79 TIEPDTS-----VSDVASLMLE   95 (121)
T ss_pred             EECCCCc-----HHHHHHHHHH
Confidence            9999999     9999999965

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.28  E-value=1.3e-06  Score=69.26  Aligned_cols=82  Identities=21%  Similarity=0.289  Sum_probs=62.2

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC----------CccccCccccccccccee--
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----------PEDEVPVKSVTIRRIPRY--  282 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~----------~~~~~~v~~~~~~~~~~v--  282 (304)
                      ++.+++.++++. ++++.+.++++..+||.+++ |+++|+++.+|+.+..          .....++.++|.++...+  
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~   79 (126)
T cd04640           2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL   79 (126)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence            356789999998 99999998999999999864 8999999999987521          112346788864444332  


Q ss_pred             ----cCCCCCchhHHHHHHHHHhhc
Q 022005          283 ----LISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       283 ----~~~~~~~~~~l~~~l~~m~~~  303 (304)
                          +++++     +.++++.|.++
T Consensus        80 ~~~~~~~~~-----l~~~l~~m~~~   99 (126)
T cd04640          80 DLEELENAS-----VGDVVETLKAS   99 (126)
T ss_pred             cHHHhccCc-----HHHHHHHHHHC
Confidence                25677     99999999754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.28  E-value=3e-06  Score=64.28  Aligned_cols=69  Identities=9%  Similarity=0.102  Sum_probs=58.9

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHH
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALF  294 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~  294 (304)
                      ++.++++++++. ++++.+.+.+++.+||++++ ++++|+++.+|+.+...             +.+++++.+     +.
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~-------------~~~v~~~~~-----l~   61 (96)
T cd04614           2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKSE-------------VVTATKRTT-----VS   61 (96)
T ss_pred             CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCCC-------------cEEecCCCC-----HH
Confidence            466899999998 99999999999999999854 89999999999976321             667888998     99


Q ss_pred             HHHHHHhhc
Q 022005          295 RSLSLFSTS  303 (304)
Q Consensus       295 ~~l~~m~~~  303 (304)
                      ++++.|+++
T Consensus        62 ~a~~~m~~~   70 (96)
T cd04614          62 ECAQKMKRN   70 (96)
T ss_pred             HHHHHHHHh
Confidence            999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.27  E-value=1.9e-06  Score=65.46  Aligned_cols=82  Identities=22%  Similarity=0.356  Sum_probs=67.0

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccc----cCcccccccccceecCCCCCch
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE----VPVKSVTIRRIPRYLISLGKCS  290 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~----~~v~~~~~~~~~~v~~~~~~~~  290 (304)
                      ++.+++.++++. ++.+.+.+++++++||++++ ++++|+++.+|+........    ..+.++|..++.+++++++   
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   76 (113)
T cd02205           2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTS---   76 (113)
T ss_pred             CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcC---
Confidence            456789999998 99999999999999999865 89999999999987543221    1255677788899999999   


Q ss_pred             hHHHHHHHHHhhc
Q 022005          291 CALFRSLSLFSTS  303 (304)
Q Consensus       291 ~~l~~~l~~m~~~  303 (304)
                        +.++++.|+++
T Consensus        77 --~~~~~~~~~~~   87 (113)
T cd02205          77 --LEEAAELMLEH   87 (113)
T ss_pred             --HHHHHHHHHHc
Confidence              99999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.24  E-value=2e-06  Score=83.85  Aligned_cols=90  Identities=14%  Similarity=0.212  Sum_probs=77.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccce
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR  281 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~  281 (304)
                      ...+++++|++  +++++++++++. ++.+.+.+++++.+||.++  ++++|+|+.+|+.....  ..++.++|.+++.+
T Consensus        86 ~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~~--~~~V~dIMt~~lit  158 (475)
T TIGR01303        86 AFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVDR--FTQVRDIMSTDLVT  158 (475)
T ss_pred             hhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCCC--CCCHHHHccCCceE
Confidence            35578899975  678999999998 9999999999999999874  68999999999965432  35799999999999


Q ss_pred             ecCCCCCchhHHHHHHHHHhhc
Q 022005          282 YLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       282 v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++++     +.++++.|.++
T Consensus       159 v~~~~s-----L~eAl~lM~~~  175 (475)
T TIGR01303       159 APADTE-----PRKAFDLLEHA  175 (475)
T ss_pred             eCCCCc-----HHHHHHHHHHc
Confidence            999999     99999999764

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.22  E-value=3e-06  Score=65.82  Aligned_cols=82  Identities=15%  Similarity=0.291  Sum_probs=64.9

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEechhcccCCccccCcccccccccceecC--CCCCch
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLI--SLGKCS  290 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~--~~~~~~  290 (304)
                      ++.++++++++. ++.+.+.+.+++++||+++.  .++++|+++.+|++.... ...+++++|.+++..+..  +++   
T Consensus         3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~---   77 (114)
T cd04602           3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGIT---   77 (114)
T ss_pred             CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCC---
Confidence            556789999998 99999998999999999852  489999999999875332 234588887666666654  888   


Q ss_pred             hHHHHHHHHHhhc
Q 022005          291 CALFRSLSLFSTS  303 (304)
Q Consensus       291 ~~l~~~l~~m~~~  303 (304)
                        +.++++.|+++
T Consensus        78 --l~~~l~~~~~~   88 (114)
T cd04602          78 --LEEANEILRES   88 (114)
T ss_pred             --HHHHHHHHHhc
Confidence              99999999764

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.21  E-value=2.6e-06  Score=65.55  Aligned_cols=75  Identities=15%  Similarity=0.216  Sum_probs=61.6

Q ss_pred             EeCCCCccHHHHHHHHhcCC-----ceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHH
Q 022005          219 IDINAKLDKELMNLILEKGH-----SRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCAL  293 (304)
Q Consensus       219 l~~~~t~~~e~~~~~~~~~~-----sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l  293 (304)
                      +++++++. ++++.+.++++     ..+||++++ ++++|+++.+|+++..  .+.++.++|.+++..++++++     +
T Consensus         2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~-----~   72 (109)
T cd04606           2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDD-----Q   72 (109)
T ss_pred             ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCC-----H
Confidence            57889998 89999988773     678999754 8999999999998643  234688886667888999999     9


Q ss_pred             HHHHHHHhh
Q 022005          294 FRSLSLFST  302 (304)
Q Consensus       294 ~~~l~~m~~  302 (304)
                      .++++.|++
T Consensus        73 ~~~~~~~~~   81 (109)
T cd04606          73 EEVARLFEK   81 (109)
T ss_pred             HHHHHHHHH
Confidence            999999875

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.18  E-value=3.5e-06  Score=64.93  Aligned_cols=81  Identities=11%  Similarity=0.134  Sum_probs=65.4

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc-----cccCcccccccccceecCCCCCc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----DEVPVKSVTIRRIPRYLISLGKC  289 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~~~~~~~~~~v~~~~~~~  289 (304)
                      ++.++++++++. ++.+.+.+++++.+||.+ + ++++|+++.+|+++....     ...++.++|.+++..++++++  
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~--   76 (112)
T cd04625           2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDS--   76 (112)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCC--
Confidence            566799999998 899999888888887765 4 799999999999864321     134688887677788999999  


Q ss_pred             hhHHHHHHHHHhhc
Q 022005          290 SCALFRSLSLFSTS  303 (304)
Q Consensus       290 ~~~l~~~l~~m~~~  303 (304)
                         +.++++.|.++
T Consensus        77 ---l~~a~~~m~~~   87 (112)
T cd04625          77 ---IDEVRRLMVER   87 (112)
T ss_pred             ---HHHHHHHHHHc
Confidence               99999999754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.17  E-value=3.4e-06  Score=65.43  Aligned_cols=81  Identities=17%  Similarity=0.375  Sum_probs=63.1

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcC-CceeeeeeCCCCcEEEEEEechhcccCCc----cccCcccccccccceecCC--CC
Q 022005          215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRIPRYLIS--LG  287 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~-~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~~~~~~v~~~--~~  287 (304)
                      ++.+++.+.++. ++.+.+.+++ ++.+||.+ + ++++|+++.+|+++...+    ...++.++|.+++.+++++  .+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~   78 (115)
T cd04620           2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVE-K-GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD   78 (115)
T ss_pred             CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcC-C-CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence            345789999998 8999998888 67778776 3 799999999999864321    1346788877777888876  56


Q ss_pred             CchhHHHHHHHHHhhc
Q 022005          288 KCSCALFRSLSLFSTS  303 (304)
Q Consensus       288 ~~~~~l~~~l~~m~~~  303 (304)
                           +.++++.|.++
T Consensus        79 -----l~~a~~~~~~~   89 (115)
T cd04620          79 -----IFTALSLFRQH   89 (115)
T ss_pred             -----HHHHHHHHHHh
Confidence                 99999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.13  E-value=3.3e-06  Score=65.42  Aligned_cols=55  Identities=18%  Similarity=0.273  Sum_probs=48.9

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+++++|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus        56 ~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~  110 (111)
T cd04603          56 LKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR  110 (111)
T ss_pred             cChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence            468999964  567899999998 99999999999999999865 79999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.11  E-value=1.3e-05  Score=77.38  Aligned_cols=106  Identities=23%  Similarity=0.296  Sum_probs=90.0

Q ss_pred             CChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCC-----ceeeeeeCCCCcEEEEEEechhc
Q 022005          187 LTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH-----SRVPVYYEEPTNIIGLILVKNLL  261 (304)
Q Consensus       187 l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~-----sr~PV~~~~~~~ivGiv~~kDll  261 (304)
                      ++++|++.++..+...+-++..+|+.  +.++++.+.|++ ++++.+++.+.     ..+.|+|++ ++++|+++.++++
T Consensus       115 l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~Ll  190 (451)
T COG2239         115 LDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDLL  190 (451)
T ss_pred             CCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHHh
Confidence            67899999999999999999999995  899999999999 99999994432     344567764 7899999999998


Q ss_pred             ccCCccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          262 TIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       262 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ...+  +..++++|.+.+.+|+.++.     ..++.+.|+++
T Consensus       191 ~a~~--~~~i~~im~~~~~~V~~~~d-----qeevA~~~~~y  225 (451)
T COG2239         191 TAEP--DELLKDLMEDDVVSVLADDD-----QEEVARLFEKY  225 (451)
T ss_pred             cCCc--HhHHHHHhcccceeecccCC-----HHHHHHHHHHh
Confidence            6544  45789998888899999999     88888888764

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.09  E-value=4.9e-06  Score=64.48  Aligned_cols=58  Identities=29%  Similarity=0.450  Sum_probs=50.6

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.++.++|.|..++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus        56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~  113 (114)
T cd04801          56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR  113 (114)
T ss_pred             ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence            457899998755566899999998 99999999999999999864 79999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.09  E-value=5.3e-06  Score=64.98  Aligned_cols=55  Identities=22%  Similarity=0.326  Sum_probs=48.8

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+|+|+|.+  ++.++++++++. ++++.+.++++..+||++++ ++++|+++.+|+.+
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence            679999985  677899999998 99999999999999999864 79999999999853

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.06  E-value=1.3e-05  Score=62.11  Aligned_cols=86  Identities=23%  Similarity=0.375  Sum_probs=71.8

Q ss_pred             cccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc--cc-Ccccccccccceec
Q 022005          207 SDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED--EV-PVKSVTIRRIPRYL  283 (304)
Q Consensus       207 ~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~--~~-~v~~~~~~~~~~v~  283 (304)
                      .++|.  .+++++.++.++. ++...+.+++++++||.++  ++++|+++.+|+.+.....  .. ++.++|.+++.++.
T Consensus         2 ~~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~   76 (117)
T COG0517           2 KDIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVD   76 (117)
T ss_pred             ccccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEEC
Confidence            34554  5788999999998 9999999999999999974  3799999999999865432  12 58888777899999


Q ss_pred             CCCCCchhHHHHHHHHHhh
Q 022005          284 ISLGKCSCALFRSLSLFST  302 (304)
Q Consensus       284 ~~~~~~~~~l~~~l~~m~~  302 (304)
                      ++.+     +.++++.|.+
T Consensus        77 ~~~~-----~~~~~~~m~~   90 (117)
T COG0517          77 PDTP-----LEEALELMVE   90 (117)
T ss_pred             CCCC-----HHHHHHHHHH
Confidence            9999     9999999876

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.05  E-value=7e-06  Score=64.24  Aligned_cols=60  Identities=17%  Similarity=0.180  Sum_probs=51.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCC--CcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP--TNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~--~~ivGiv~~kDll~  262 (304)
                      .+.+++++|+.-.++.++++++++. ++++.|.+++++++||++++.  ++++|+|+.+|+++
T Consensus        56 ~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          56 QKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             cCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            4567889997324677999999998 999999999999999998653  58999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.03  E-value=8.3e-06  Score=62.85  Aligned_cols=59  Identities=24%  Similarity=0.376  Sum_probs=50.6

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       200 ~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.+..++.++|.+  ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus        55 ~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~  113 (114)
T cd04604          55 DILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR  113 (114)
T ss_pred             ccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence            3444579999976  556899999998 99999999999999999864 89999999999875

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.02  E-value=7.4e-06  Score=63.70  Aligned_cols=57  Identities=16%  Similarity=0.323  Sum_probs=49.8

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+.+++++|..  ++.++++++++. ++++.+.+++..++||++++ ++++|+++.+|+++
T Consensus        57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~  113 (114)
T cd04619          57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK  113 (114)
T ss_pred             ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence            34578999964  677899999998 99999999999999999864 79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.89  E-value=1.3e-05  Score=78.71  Aligned_cols=61  Identities=18%  Similarity=0.302  Sum_probs=54.9

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      ..+.+|+|+|+|..+++++++++++. ++++.|.+++.+++||+|++ ++++|+|+.+|+++.
T Consensus       158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~  218 (502)
T PRK07107        158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSH  218 (502)
T ss_pred             CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhc
Confidence            44678999999877888999999998 99999999999999999864 799999999999875

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.88  E-value=1.6e-05  Score=61.87  Aligned_cols=58  Identities=28%  Similarity=0.492  Sum_probs=50.8

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      ..+.++.++|.+  ++.++++++++. ++++.+.+.+++++||++++ |+++|+++.+|+++
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~  121 (122)
T cd04585          64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR  121 (122)
T ss_pred             hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence            345679999975  677899999998 99999999999999999864 79999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.88  E-value=8.5e-06  Score=79.31  Aligned_cols=89  Identities=18%  Similarity=0.240  Sum_probs=65.2

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccce
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR  281 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~  281 (304)
                      ++.+++++|+|  +++++++++++. ++.+.+.++++..+||+|++ |+++|+|+.+|+++...++.  -+++|......
T Consensus       193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~~--~ed~~~~~gv~  266 (449)
T TIGR00400       193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSEA--TEDFYMIAAVK  266 (449)
T ss_pred             CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhhh--HHHHHHhcCCC
Confidence            45689999986  677899999998 99999999999999999865 89999999999998654331  24554333333


Q ss_pred             ecCCCCCchhHHHHHHHHHh
Q 022005          282 YLISLGKCSCALFRSLSLFS  301 (304)
Q Consensus       282 v~~~~~~~~~~l~~~l~~m~  301 (304)
                      ..++..     +.+.+.+|.
T Consensus       267 ~~~~~~-----l~~~~~~~~  281 (449)
T TIGR00400       267 PLDDSY-----FDTSILVMA  281 (449)
T ss_pred             CCcchh-----hhchHHHHH
Confidence            323344     555555443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.86  E-value=2.2e-05  Score=60.68  Aligned_cols=56  Identities=21%  Similarity=0.493  Sum_probs=48.7

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.+++++|.+  .+.++++++++. ++++.+.+++.+++||++++ |+++|+++.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  112 (113)
T cd04607          57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS  112 (113)
T ss_pred             CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence            3468899965  566899999998 99999999999999999864 89999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.85  E-value=1.3e-05  Score=63.49  Aligned_cols=60  Identities=27%  Similarity=0.385  Sum_probs=47.6

Q ss_pred             ccccccccccccceEEEEe----CCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAID----INAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~----~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+.+++++|.+...+..++    +++++. ++++.|.+++.+++||++++.++++|+|+..|+++
T Consensus        62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            3567999997533333443    678998 89999999999999999864368999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.85  E-value=2.6e-05  Score=59.41  Aligned_cols=46  Identities=17%  Similarity=0.215  Sum_probs=41.9

Q ss_pred             EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       216 v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.++++++++. ++++.|.+++..++||++++.|+++|+++.+|+++
T Consensus        52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            67899999998 99999999999999999864479999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.82  E-value=2.9e-05  Score=59.53  Aligned_cols=55  Identities=20%  Similarity=0.448  Sum_probs=48.8

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.+++++|.+  ++.++++++++. ++++.+.+.+++++||+++  ++++|+++.+|+++
T Consensus        58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence            4578999965  677899999998 9999999999999999985  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.81  E-value=2.9e-05  Score=59.09  Aligned_cols=56  Identities=18%  Similarity=0.400  Sum_probs=48.7

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.+++++|.+  .+.++++++++. ++++.+.+++.+++||++++ |+++|+++.+|+++
T Consensus        51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence            3568999975  466799999998 99999999999999999865 79999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.78  E-value=3.2e-05  Score=60.60  Aligned_cols=58  Identities=26%  Similarity=0.535  Sum_probs=50.7

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      ....+++++|.+  ++.++++++++. ++++.+.+.+.+++||++++ |+++|+++.+|+++
T Consensus        66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~  123 (124)
T cd04600          66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA  123 (124)
T ss_pred             cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence            345679999965  677899999998 99999999999999999864 89999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.77  E-value=3.6e-05  Score=59.63  Aligned_cols=56  Identities=16%  Similarity=0.297  Sum_probs=49.2

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+.+++++|..  ++.++++++++. ++++.+.+++..++||+++  ++++|+++.+|+++
T Consensus        58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~  113 (114)
T cd04630          58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL  113 (114)
T ss_pred             CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence            34678999953  677999999998 9999999999999999985  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.77  E-value=4.4e-05  Score=58.07  Aligned_cols=54  Identities=13%  Similarity=0.302  Sum_probs=47.2

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      ++.++|.+  ...++++++++. ++++.+.+++++.+||++++ ++++|+++.+|+++
T Consensus        52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            57899976  456789999998 99999999999999999864 79999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.76  E-value=3.5e-05  Score=59.11  Aligned_cols=57  Identities=16%  Similarity=0.400  Sum_probs=49.9

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+.+++++|.+  ++.++++++++. ++.+.+.+++...+||++++ |+++|+++.+|+++
T Consensus        51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~  107 (108)
T cd04596          51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK  107 (108)
T ss_pred             ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence            35679999975  577899999998 99999999999999999864 79999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.75  E-value=4.5e-05  Score=59.01  Aligned_cols=56  Identities=14%  Similarity=0.306  Sum_probs=47.7

Q ss_pred             cccccccccccceEEEEeCC--CCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          203 EKTASDAMTPIAETFAIDIN--AKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~--~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.++.++|.+  ++.+++++  +++. ++++.+.+++..++||++++ |+++|+++.+|+++
T Consensus        57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence            4678899965  56678876  6887 89999999999999999865 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.73  E-value=4.3e-05  Score=61.69  Aligned_cols=56  Identities=29%  Similarity=0.399  Sum_probs=49.3

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+.+++++|++  ++.++++++++. ++++.+.+.++.++||+++  |+++|+++.+|+++
T Consensus        79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~  134 (135)
T cd04621          79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR  134 (135)
T ss_pred             ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence            45689999975  566899999998 9999999999999999975  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.73  E-value=4.2e-05  Score=58.79  Aligned_cols=55  Identities=22%  Similarity=0.421  Sum_probs=48.2

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.+++++|.+  ++.++++++++. ++++.|.+++..++||.++  ++++|+++.+|+++
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence            4578999964  567899999998 9999999999999999973  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.73  E-value=4.9e-05  Score=58.44  Aligned_cols=56  Identities=23%  Similarity=0.419  Sum_probs=48.6

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      ..+++++|.+  ++.++++++++. ++++.+.+.+.+++||++++ ++++|+++.+|+++
T Consensus        57 ~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  112 (113)
T cd04622          57 TTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR  112 (113)
T ss_pred             cCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            3458999975  667899999998 99999999999999999864 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.72  E-value=5.2e-05  Score=59.62  Aligned_cols=52  Identities=25%  Similarity=0.316  Sum_probs=45.1

Q ss_pred             ccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhc
Q 022005          206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLL  261 (304)
Q Consensus       206 V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll  261 (304)
                      +.++|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|+.
T Consensus        70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~  121 (123)
T cd04627          70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR  121 (123)
T ss_pred             hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence            3457754  677899999998 99999999999999999865 7899999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.71  E-value=7e-05  Score=74.69  Aligned_cols=59  Identities=20%  Similarity=0.308  Sum_probs=52.3

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      ...+|+++|+. .++.+++++++++ ++.+.+.+++++++||++++ |+++|+++.+|+++.
T Consensus       244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~  302 (546)
T PRK14869        244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSP  302 (546)
T ss_pred             cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhcc
Confidence            35789999982 4788999999998 99999999999999999865 899999999999863

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.70  E-value=5.1e-05  Score=58.43  Aligned_cols=57  Identities=19%  Similarity=0.365  Sum_probs=49.2

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+.++.++|.+  ++.+++.++++. ++++.+.+++.+++||++++ |+++|+++.+|+++
T Consensus        56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~  112 (113)
T cd04615          56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR  112 (113)
T ss_pred             cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence            34578899964  677899999998 99999999999999999864 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.69  E-value=6.5e-05  Score=57.37  Aligned_cols=56  Identities=32%  Similarity=0.556  Sum_probs=46.7

Q ss_pred             cccccccccccceEEEEeC-CCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          203 EKTASDAMTPIAETFAIDI-NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~-~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.++.++|.+  ++..+.+ ++++. ++++.+.+.+++++||++++ ++++|+++.+|+++
T Consensus        53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence            4578999964  3344566 99998 99999999999999999864 79999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.69  E-value=4.9e-05  Score=58.47  Aligned_cols=55  Identities=20%  Similarity=0.359  Sum_probs=48.4

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .++.++|.+  +..++++++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus        58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence            578999964  566899999998 99999999999999999865 89999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.68  E-value=4.9e-05  Score=58.36  Aligned_cols=57  Identities=21%  Similarity=0.386  Sum_probs=49.7

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      ..++.++|.+  ++.++++++++. ++.+.+.+.+++++||++++.++++|+++.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            4689999976  567899999998 99999999999999999852379999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.68  E-value=5e-05  Score=59.58  Aligned_cols=57  Identities=21%  Similarity=0.433  Sum_probs=49.8

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+.+++++|.+  ++.++++++++. ++.+.+.+.+.+++||.+++ ++++|+|+.+|+++
T Consensus        68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~  124 (125)
T cd04631          68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK  124 (125)
T ss_pred             hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence            44578899965  678999999998 89999999999999999864 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.68  E-value=5.6e-05  Score=60.30  Aligned_cols=56  Identities=18%  Similarity=0.439  Sum_probs=49.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      ...++.++|.+  ++..+++++++. ++.+.+.+.+++++||+++  ++++|+++.+|+++
T Consensus        76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~  131 (132)
T cd04636          76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR  131 (132)
T ss_pred             cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence            34478999975  677899999998 9999999999999999985  89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.68  E-value=4.5e-05  Score=71.02  Aligned_cols=58  Identities=21%  Similarity=0.335  Sum_probs=51.7

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      +.+.+|+|+|++  ++.++++++++. ++++.|.+++..++||+++  ++++|+|+.+|+++.
T Consensus       266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~  323 (326)
T PRK10892        266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA  323 (326)
T ss_pred             cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence            456789999986  678999999998 9999999999999999973  689999999999864

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.67  E-value=4.5e-05  Score=59.50  Aligned_cols=57  Identities=21%  Similarity=0.448  Sum_probs=49.8

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.+.++.++|.+  +..++++++++. ++++.+.+.+.+++||+++  |+++|+++.+|+++
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~  120 (121)
T cd04633          64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR  120 (121)
T ss_pred             hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence            345678899964  677899999998 9999999999999999985  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.67  E-value=4.3e-05  Score=75.21  Aligned_cols=60  Identities=15%  Similarity=0.305  Sum_probs=54.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      .+.+|+++|++..+++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++.
T Consensus       161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~  220 (505)
T PLN02274        161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRV  220 (505)
T ss_pred             cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHH
Confidence            4678999999866688999999998 99999999999999999864 799999999999864

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.67  E-value=4.3e-05  Score=74.19  Aligned_cols=94  Identities=13%  Similarity=0.152  Sum_probs=79.2

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC----CccccCcccccc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----PEDEVPVKSVTI  276 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~----~~~~~~v~~~~~  276 (304)
                      +--.+|.++|+.  +.+++++++++. ++.+.|.+.|.|..-|++++ +...|||+.+|+....    .....+|+++|.
T Consensus       146 ~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT  221 (610)
T COG2905         146 FILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVMT  221 (610)
T ss_pred             HHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhhc
Confidence            334568899985  677899999998 99999999999988888765 8999999999997632    223568999999


Q ss_pred             cccceecCCCCCchhHHHHHHHHHhhc
Q 022005          277 RRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       277 ~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .|++.|..+..     +.+++-.|.++
T Consensus       222 ~p~~svd~~~~-----~feAml~m~r~  243 (610)
T COG2905         222 SPVISVDRGDF-----LFEAMLMMLRN  243 (610)
T ss_pred             cCceeecCcch-----HHHHHHHHHHh
Confidence            99999999999     99999998653

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.66  E-value=5.8e-05  Score=58.76  Aligned_cols=57  Identities=21%  Similarity=0.333  Sum_probs=50.3

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      ..+.+++++|.+  ++.+++.+++++ ++++.+.+++++.+||+++  ++++|+++.+|+++
T Consensus        64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~  120 (121)
T cd04584          64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR  120 (121)
T ss_pred             hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence            456779999975  677899999998 9999999999999999975  79999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.65  E-value=6.6e-05  Score=57.63  Aligned_cols=57  Identities=21%  Similarity=0.431  Sum_probs=49.7

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      +.+++++|.+  ++.++++++++. ++++.+.+++...+||++++ ++++|+++..|+++.
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence            4579999965  577899999998 99999999999999999865 899999999999753

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.65  E-value=7.6e-05  Score=57.78  Aligned_cols=56  Identities=20%  Similarity=0.441  Sum_probs=48.1

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC-CCcEEEEEEechhcc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE-PTNIIGLILVKNLLT  262 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~-~~~ivGiv~~kDll~  262 (304)
                      .+++++|.+  ++.++++++++. ++++.+.+++..++||++++ .++++|+++.+|+++
T Consensus        58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            347888864  677899999998 99999999999999999864 268999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.64  E-value=7.3e-05  Score=58.39  Aligned_cols=58  Identities=16%  Similarity=0.370  Sum_probs=50.0

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      ..+.++.++|.  .++.++++++++. ++++.+.+.+..++||++++ ++++|+++.+|++.
T Consensus        64 ~~~~~v~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~  121 (122)
T cd04803          64 ERDVPVAEVMK--TDVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR  121 (122)
T ss_pred             ccCcCHHHhhC--CCCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence            35667889995  3677899999998 99999999999999999864 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.64  E-value=6.9e-05  Score=58.09  Aligned_cols=57  Identities=18%  Similarity=0.339  Sum_probs=46.7

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      ..++++|.+....+..++++++. ++++.+.+++..++||++++ ++++|+++.+|+++
T Consensus        57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence            45889997644443334499998 99999999999999999864 79999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=97.63  E-value=5.6e-05  Score=60.51  Aligned_cols=57  Identities=25%  Similarity=0.393  Sum_probs=50.2

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      ....+++++|.+  ++.++++++++. ++++.+.+.+.+++||++ + |+++|+++.+|+++
T Consensus        78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~  134 (135)
T cd04586          78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR  134 (135)
T ss_pred             hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence            355689999965  677899999998 999999999999999998 4 89999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.61  E-value=7.1e-05  Score=73.62  Aligned_cols=60  Identities=17%  Similarity=0.302  Sum_probs=54.4

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      .+.+|+|+|+|+.+++++++++++. |+.+.+.+++...+||++++ ++++|+|+.+|+++.
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~  216 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKN  216 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhc
Confidence            3568999999877899999999998 99999999999999999865 899999999999864

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.61  E-value=8.7e-05  Score=56.99  Aligned_cols=55  Identities=25%  Similarity=0.529  Sum_probs=48.3

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.++.++|.+  ++.++++++++. ++++.+.+++..++||+++  ++++|+++.+|++.
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~  110 (111)
T cd04626          56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD  110 (111)
T ss_pred             cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence            4578899964  677899999998 9999999999999999985  79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.61  E-value=0.00015  Score=55.98  Aligned_cols=53  Identities=25%  Similarity=0.543  Sum_probs=47.4

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHh-cCCceeeeeeCCCC-cEEEEEEechhc
Q 022005          205 TASDAMTPIAETFAIDINAKLDKELMNLILE-KGHSRVPVYYEEPT-NIIGLILVKNLL  261 (304)
Q Consensus       205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~-~~~sr~PV~~~~~~-~ivGiv~~kDll  261 (304)
                      ++.++|++  ++++++++.++. ++.+.+.+ ++++++||++++ + +++|+++.+|++
T Consensus        63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~-~~~lvGivt~~di~  117 (117)
T COG0517          63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDD-GGKLVGIITLSDIL  117 (117)
T ss_pred             cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECC-CCeEEEEEEHHHcC
Confidence            69999985  778899999998 99999999 799999999864 4 999999999974

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.60  E-value=9.2e-05  Score=56.41  Aligned_cols=55  Identities=31%  Similarity=0.590  Sum_probs=48.1

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .++.++|.+  ++.++++++++. ++.+.+.+++.+++||++++ |+++|+++.+|+++
T Consensus        54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence            468899975  667899999998 99999999999999999864 79999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.60  E-value=8.9e-05  Score=56.93  Aligned_cols=56  Identities=18%  Similarity=0.221  Sum_probs=48.9

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+.+++++|.+  ++..+++++++. ++++.+.+++..++||+++  ++++|+++.+|+++
T Consensus        55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~  110 (111)
T cd04589          55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence            34578899965  677899999998 9999999999999999974  79999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=97.60  E-value=0.0001  Score=68.49  Aligned_cols=57  Identities=14%  Similarity=0.286  Sum_probs=50.7

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      +.+|+|+|++  ++.++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++++
T Consensus       262 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~  318 (321)
T PRK11543        262 TTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA  318 (321)
T ss_pred             CCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence            4569999986  677899999998 99999999999999999865 799999999999864

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=97.60  E-value=5.5e-05  Score=66.80  Aligned_cols=58  Identities=19%  Similarity=0.275  Sum_probs=52.5

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      +.+|+|+|.+  ++++++.|+.+- |+++.|..++..|+-|.|. .|+.+|+++..|++...
T Consensus       233 ~~kV~~~M~k--~vitI~eDe~i~-dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~i  290 (294)
T COG2524         233 DAKVSDYMRK--NVITINEDEDIY-DAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRI  290 (294)
T ss_pred             cccHHHHhcc--CCceEcCchhHH-HHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHh
Confidence            4689999975  999999999999 9999999999999999985 48999999999998754

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=97.59  E-value=0.0001  Score=56.30  Aligned_cols=57  Identities=18%  Similarity=0.357  Sum_probs=49.2

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+.++.++|.+  ++.++++++++. ++++.+.+.+.+.+||++++ |+++|+++.+|+++
T Consensus        54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence            35678899965  677899999998 89999999999999999864 79999999999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.58  E-value=8.9e-05  Score=57.89  Aligned_cols=57  Identities=19%  Similarity=0.440  Sum_probs=49.5

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      ...++.++|.+  ++.+++.++++. ++.+.+.+++.+++||++++ |+++|+++.+|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence            45678899964  677899999998 99999999999999999865 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.58  E-value=0.00011  Score=56.51  Aligned_cols=56  Identities=25%  Similarity=0.501  Sum_probs=48.5

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+.+++++|.+  ++.++++++++. ++++.+.+++...+||+++  ++++|+++.+|+++
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~  111 (112)
T cd04802          56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM  111 (112)
T ss_pred             ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence            44578999975  677899999998 9999999999999999985  38999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.58  E-value=8.7e-05  Score=56.92  Aligned_cols=55  Identities=22%  Similarity=0.370  Sum_probs=48.3

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .++.++|..  ++.++++++++. ++.+.+.+++..++||++++ ++++|+++.+|+.+
T Consensus        56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~  110 (111)
T cd04639          56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE  110 (111)
T ss_pred             CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence            468899964  677899999998 99999999999999999864 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.57  E-value=0.00012  Score=57.34  Aligned_cols=52  Identities=17%  Similarity=0.237  Sum_probs=44.7

Q ss_pred             cccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          207 SDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       207 ~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +++|.  .++.++++++++. ++++.|.+++.+++||++++ |+++|+++.+|+++
T Consensus        68 ~~~~~--~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~  119 (120)
T cd04641          68 RSQDF--EGVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQ  119 (120)
T ss_pred             cccCC--CCCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhc
Confidence            44554  3567899999998 99999999999999999865 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.57  E-value=0.0001  Score=55.84  Aligned_cols=55  Identities=33%  Similarity=0.430  Sum_probs=48.4

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.+++++|.+  +..++++++++. ++++.+.+++.+++||+++  ++++|+++.+|++.
T Consensus        50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~  104 (105)
T cd04599          50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL  104 (105)
T ss_pred             cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence            3568899965  677899999998 9999999999999999985  89999999999863

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=97.56  E-value=0.00012  Score=55.87  Aligned_cols=54  Identities=11%  Similarity=0.257  Sum_probs=47.2

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .++.++|.+  +..++++++++. ++++.+.+++.+++||++ + |+++|+++.+|++.
T Consensus        50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~  103 (104)
T cd04594          50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD  103 (104)
T ss_pred             cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence            357888975  567899999998 999999999999999997 3 79999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.56  E-value=8.5e-05  Score=57.18  Aligned_cols=55  Identities=25%  Similarity=0.427  Sum_probs=48.5

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.++.++|.+  ++.++++++++. ++++.+.+++.+++||+++  |+++|+++.+|+++
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence            4578899975  567899999998 9999999999999999985  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.55  E-value=7.9e-05  Score=57.55  Aligned_cols=55  Identities=22%  Similarity=0.426  Sum_probs=46.4

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+.+++++|.+  ++.++++++++. ++++.+.+.+  .+||++++ ++++|+++.+|+++
T Consensus        61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~  115 (116)
T cd04643          61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIITRREILK  115 (116)
T ss_pred             hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhc
Confidence            45679999976  567899999998 9999998755  59999864 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.52  E-value=0.00016  Score=55.32  Aligned_cols=55  Identities=20%  Similarity=0.387  Sum_probs=47.9

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .++.++|.+  ++.+++.++++. ++++.+.+++.+.+||++++ ++++|+++.+|+++
T Consensus        56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence            457788875  677899999998 99999999999999999864 79999999999865

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.51  E-value=0.00012  Score=57.94  Aligned_cols=58  Identities=22%  Similarity=0.369  Sum_probs=49.4

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeC-CCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYE-EPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~-~~~~ivGiv~~kDll~  262 (304)
                      .+.+++++|++  ++.++++++++. ++++.+.+.++..+||+++ +.++++|+|+.+|+++
T Consensus        69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            44678999975  677899999998 9999999999999999853 3478999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=97.49  E-value=0.00016  Score=55.46  Aligned_cols=56  Identities=23%  Similarity=0.453  Sum_probs=49.1

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+.+++++|.+  ++.++++++++. ++++.+.+.+.+++||.+ + |+++|+++.+|+++
T Consensus        54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~  109 (110)
T cd04595          54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR  109 (110)
T ss_pred             ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence            45678999975  677899999998 999999999999999998 3 79999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.49  E-value=0.00012  Score=57.24  Aligned_cols=55  Identities=33%  Similarity=0.503  Sum_probs=48.3

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+++++|.+  ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence            358899964  678899999998 99999999999999999764 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.48  E-value=0.00015  Score=55.59  Aligned_cols=55  Identities=29%  Similarity=0.486  Sum_probs=48.5

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.++.++|..  ++.++++++++. ++++.+.+++.+++||+++  ++++|+++.+|+++
T Consensus        56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            3578899964  677899999998 9999999999999999985  79999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.47  E-value=0.00018  Score=54.32  Aligned_cols=45  Identities=16%  Similarity=0.296  Sum_probs=41.2

Q ss_pred             EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       216 v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.++++++++. ++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus        51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~   95 (96)
T cd04614          51 VVTATKRTTVS-ECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLK   95 (96)
T ss_pred             cEEecCCCCHH-HHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            67899999998 99999999999999999864 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.46  E-value=0.00015  Score=46.11  Aligned_cols=45  Identities=24%  Similarity=0.564  Sum_probs=39.7

Q ss_pred             EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       216 v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.++++++++. ++.+.+.+.+++++||++++ ++++|+++.+|+.+
T Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~   46 (49)
T smart00116        2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIK   46 (49)
T ss_pred             ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHH
Confidence            45688999998 99999999999999999865 79999999999865

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=97.41  E-value=0.00016  Score=72.68  Aligned_cols=59  Identities=20%  Similarity=0.277  Sum_probs=51.3

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCC-CcEEEEEEechhcccC
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP-TNIIGLILVKNLLTIH  264 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~-~~ivGiv~~kDll~~~  264 (304)
                      +.+++|+|++  ++.++++|++++ ++++.+.+++.+++||+|++. ++++|+|+.+|+++..
T Consensus       511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l  570 (574)
T PRK01862        511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY  570 (574)
T ss_pred             cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence            4679999975  667899999998 999999999999999998653 4799999999998754

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.40  E-value=0.00024  Score=54.35  Aligned_cols=55  Identities=24%  Similarity=0.378  Sum_probs=47.8

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .++.++|.+  ++.++++++++. ++++.+.+.+...+||++++ ++++|+++.+|+++
T Consensus        55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence            468888853  677899999998 99999999999999999864 79999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.39  E-value=6.4e-05  Score=59.66  Aligned_cols=58  Identities=19%  Similarity=0.228  Sum_probs=46.5

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHH---------HhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLI---------LEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~---------~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      .+.+|+|+|++  ++.++++++++. ++.+.+         .+.+..++||.+++ |+++|+|+.+|++++
T Consensus        57 ~~~~v~~im~~--~~~~v~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~Givt~~Dl~~~  123 (124)
T cd04608          57 PSDPVSKALYK--QFKRVNKNDTLG-KLSRILETDAFLLVFFEQISSAAIGKEKQ-EKPIGIVTKIDLLSY  123 (124)
T ss_pred             CCCcHHHHhhc--cceecCCCCCHH-HHHhhcccCCceEEEeccccccccccccc-cceEEEEehhHhhhh
Confidence            45689999985  678899999998 888854         23466778888754 899999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.38  E-value=0.00017  Score=70.51  Aligned_cols=57  Identities=14%  Similarity=0.251  Sum_probs=51.3

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+++|+|++  ++.++++++++. ++++.|.+++..++||+|++ ++++|+|+.+|+++..
T Consensus       148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~  204 (479)
T PRK07807        148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRAT  204 (479)
T ss_pred             CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHh
Confidence            569999985  788999999998 99999999999999999864 7999999999998743

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.37  E-value=0.00018  Score=70.40  Aligned_cols=56  Identities=11%  Similarity=0.223  Sum_probs=50.9

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      .+++++|++  +++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++.
T Consensus       146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~  201 (475)
T TIGR01303       146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRA  201 (475)
T ss_pred             CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHH
Confidence            579999985  788999999998 99999999999999999864 799999999999874

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.35  E-value=0.0003  Score=53.96  Aligned_cols=56  Identities=18%  Similarity=0.335  Sum_probs=48.3

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.+++++|.+  ++.+++.++++. ++++.+.+++.+.+||++++ ++++|+++.+|+++
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~  111 (112)
T cd04624          56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR  111 (112)
T ss_pred             ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence            3468889864  577899999998 89999999999999999865 88999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=97.34  E-value=0.00026  Score=63.81  Aligned_cols=62  Identities=18%  Similarity=0.276  Sum_probs=54.8

Q ss_pred             hccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          199 LELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       199 l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      -.+.+-+|+.+|++  .+.++.+|++.. |++-.+.+.|+..+||+|++ |+++|||+-.|++.+.
T Consensus       310 r~~~~~~vk~imt~--~v~tv~pdtpa~-~lvp~lad~g~H~lpvld~~-g~lvGIvsQtDliaal  371 (382)
T COG3448         310 RFLRPPTVKGIMTT--PVVTVRPDTPAV-ELVPRLADEGLHALPVLDAA-GKLVGIVSQTDLIAAL  371 (382)
T ss_pred             hccCCCcccccccC--cceeecCCCcHH-HHHHHhhcCCcceeeEEcCC-CcEEEEeeHHHHHHHH
Confidence            34567899999996  678999999998 99999999999999999975 9999999999998653

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=97.33  E-value=0.00035  Score=53.41  Aligned_cols=54  Identities=20%  Similarity=0.313  Sum_probs=46.9

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +++++|.+  ++.+++++++++ ++++.+.+++...+||++++ ++++|+++.+|+.+
T Consensus        56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~  109 (110)
T cd04605          56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK  109 (110)
T ss_pred             CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence            47888864  567899999998 99999999999999999864 89999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.32  E-value=0.00034  Score=55.20  Aligned_cols=51  Identities=20%  Similarity=0.289  Sum_probs=44.2

Q ss_pred             ccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          208 DAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       208 diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.|.  .++.++++++++. ++++.+.+++.+++||++++ ++++|+++..|+++
T Consensus        75 ~~~~--~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKS--RPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS  125 (126)
T ss_pred             cccc--CCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence            4553  3677899999998 99999999999999999865 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=97.32  E-value=0.00028  Score=54.05  Aligned_cols=53  Identities=17%  Similarity=0.257  Sum_probs=45.4

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+.++|.   ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus        58 ~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  110 (111)
T cd04590          58 DLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE  110 (111)
T ss_pred             CHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence            4667664   356799999998 99999999999999999864 78999999999864

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.30  E-value=0.0002  Score=71.40  Aligned_cols=57  Identities=23%  Similarity=0.355  Sum_probs=51.2

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      ..+|+|+|++  ++.++++++++. ++++.|.+++++++||++++ |+++|+++.+|+.+.
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~  123 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARA  123 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHH
Confidence            3689999985  778999999998 99999999999999999865 899999999999764

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.28  E-value=0.00041  Score=53.22  Aligned_cols=49  Identities=22%  Similarity=0.417  Sum_probs=43.4

Q ss_pred             cccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          209 AMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       209 iMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +|.+  ++.++++++++. ++.+.+.+++..++||++  .|+++|+++.+|+++
T Consensus        56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLK  104 (105)
T ss_pred             hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhc
Confidence            7864  677899999998 999999999999999995  379999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.27  E-value=0.00035  Score=56.74  Aligned_cols=56  Identities=18%  Similarity=0.411  Sum_probs=49.2

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+.++.++|.+  ++.+++.++++. ++++.+.+.+++++||+++  ++++|+++.+|+++
T Consensus        87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~  142 (143)
T cd04634          87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE  142 (143)
T ss_pred             hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            45678999975  677899999998 9999999999999999985  79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.17  E-value=0.00027  Score=68.77  Aligned_cols=70  Identities=17%  Similarity=0.316  Sum_probs=59.7

Q ss_pred             HHHHHhhhhc---cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005          191 ETTIIAGALE---LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       191 e~~~i~~~l~---l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~  265 (304)
                      ++++..+++.   -...+|+++||.  ++++++..+-+- |+.-.|.+.+..|+||+++  |+++|+|+..|+++...
T Consensus       198 ~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         198 RKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFS  270 (610)
T ss_pred             hHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhC
Confidence            4667777764   245689999995  899999999998 9999999999999999974  89999999999998654

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.14  E-value=0.0005  Score=53.29  Aligned_cols=57  Identities=25%  Similarity=0.398  Sum_probs=46.7

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCc---eeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHS---RVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~s---r~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+.+++++|.+  ++.++++++++. ++++.+.+++..   ..||++++ ++++|+|+.+|+++
T Consensus        59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence            45679999975  677899999998 999999888753   45777764 89999999999875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.12  E-value=0.00052  Score=61.89  Aligned_cols=51  Identities=16%  Similarity=0.253  Sum_probs=44.7

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEE
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~  256 (304)
                      .+.+++|+|.+  ++.++++++++. ++++.+.+++..++||++++ ++++|+||
T Consensus       218 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~GvI~  268 (268)
T TIGR00393       218 LKSEVRDFMTL--GPKTFKLDALLL-EALEFLERRKITSLVVVDDH-NKVLGVLH  268 (268)
T ss_pred             ccCcHHHhCCC--CCeEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CeEEEEEC
Confidence            35679999975  567899999998 99999999999999999864 79999986

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=97.10  E-value=0.00058  Score=66.52  Aligned_cols=60  Identities=23%  Similarity=0.433  Sum_probs=52.9

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++++|++ .++.++++++++. ++++.+.+++...+||++++ ++++|+|+.+|+++..
T Consensus       141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR  200 (450)
T ss_pred             CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc
Confidence            35689999984 4788999999998 99999999999999999875 8999999999998753

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=96.97  E-value=0.0008  Score=51.12  Aligned_cols=54  Identities=24%  Similarity=0.334  Sum_probs=43.4

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.++.++|.+  ++.++++++++. ++.+.+.+ .+ ..||++++ ++++|+++.+|+++
T Consensus        56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~~-~~~vv~~~-~~~~Gvvt~~di~~  109 (110)
T cd04609          56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-GN-VAVVVDEG-GKFVGIITRADLLK  109 (110)
T ss_pred             CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-CC-ceeEEecC-CeEEEEEeHHHhhc
Confidence            3568889964  567899999998 89888877 33 47888765 89999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.97  E-value=0.0011  Score=50.31  Aligned_cols=54  Identities=20%  Similarity=0.400  Sum_probs=46.2

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .++.++|.+  ++.+++.++++. ++++.+.+++..++||+++  ++++|+++.+|+++
T Consensus        52 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~  105 (106)
T cd04638          52 EQLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR  105 (106)
T ss_pred             chHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            357788864  567789999998 9999999999999999984  69999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=96.96  E-value=0.0012  Score=60.75  Aligned_cols=86  Identities=10%  Similarity=0.135  Sum_probs=64.8

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc---cc------Cccccc
Q 022005          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED---EV------PVKSVT  275 (304)
Q Consensus       205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~---~~------~v~~~~  275 (304)
                      +++++|.|   ++++++++++. ++++.|.+++....||+|+. |.++|+|+.+|++...-++   +.      .+... 
T Consensus       134 ~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~-  207 (292)
T PRK15094        134 SMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL-  207 (292)
T ss_pred             CHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCCccccccccccccEEe-
Confidence            47888964   45799999999 99999999999999999865 7899999999998753221   11      12221 


Q ss_pred             ccccceecCCCCCchhHHHHHHHHHh
Q 022005          276 IRRIPRYLISLGKCSCALFRSLSLFS  301 (304)
Q Consensus       276 ~~~~~~v~~~~~~~~~~l~~~l~~m~  301 (304)
                      -..-+.|+..++     +.++-+.+.
T Consensus       208 ~~~~~~v~G~~~-----l~dl~~~l~  228 (292)
T PRK15094        208 SRHTWTVRALAS-----IEDFNEAFG  228 (292)
T ss_pred             CCCeEEEEeccC-----HHHHHHHhC
Confidence            223467889999     888877763

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=96.90  E-value=0.0015  Score=61.41  Aligned_cols=125  Identities=12%  Similarity=0.173  Sum_probs=88.7

Q ss_pred             cccHHHHHHHHHhhcccccC-CCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceee
Q 022005          164 LFRRAELKTLVNLHGNEAGK-GGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVP  242 (304)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~-~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~P  242 (304)
                      .+++.|....+.+.+.-+-= .+-=.++++.+++++-.++.--   ++    +++.+.|+.++. ++++.-..++++.+|
T Consensus        72 TVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~---~~----~p~v~sp~~tvg-~v~~~k~~~gF~g~p  143 (503)
T KOG2550|consen   72 TVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGF---IN----NPIVISPTTTVG-EVKEAKEKHGFSGIP  143 (503)
T ss_pred             ccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhccc---cc----CCcccCCcccch-hhhhhcccccccccc
Confidence            45777777776654211000 0111456778888877666422   22    556799999999 999999999999999


Q ss_pred             eeeCC--CCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHHHHHHHHhh
Q 022005          243 VYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFST  302 (304)
Q Consensus       243 V~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~  302 (304)
                      |.++.  ..+++|+|+-+|+-.. .+....+.++|...+++.|....     +.++=+.+++
T Consensus       144 vTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~-----l~~~neiL~~  199 (503)
T KOG2550|consen  144 VTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGIT-----LKEANEILKK  199 (503)
T ss_pred             cccCCcccceeEEEEehhhhhhh-hcccchhhhhccccccccccccc-----HHHHHHHHHh
Confidence            99643  3689999999998544 44467889998888888998888     7766555544

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.88  E-value=0.002  Score=48.39  Aligned_cols=53  Identities=28%  Similarity=0.565  Sum_probs=46.1

Q ss_pred             ccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       206 V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      +.++|.+  ++.+++.++++. ++.+.+.+.+.+.+||++++ ++++|+++.+|+++
T Consensus        60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence            5677864  677889999998 99999999999999999875 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=96.75  E-value=0.0017  Score=63.86  Aligned_cols=58  Identities=24%  Similarity=0.398  Sum_probs=51.5

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      +.+++|+|++ .+++++++++++. ++++.+.+++++.+||++++ ++++|+++.+|+++.
T Consensus       146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~  203 (486)
T PRK05567        146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKA  203 (486)
T ss_pred             CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhh
Confidence            4579999983 4678999999998 99999999999999999865 899999999999864

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=96.75  E-value=0.0032  Score=60.58  Aligned_cols=89  Identities=17%  Similarity=0.126  Sum_probs=65.6

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc---cccC-cccccc--
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---DEVP-VKSVTI--  276 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---~~~~-v~~~~~--  276 (304)
                      +.+++++|.   ++.++++++++. ++++.|.+++....+|+|+. |.++|+|+..|+++..-+   ++.+ -.+.+.  
T Consensus       254 ~~~l~~~~~---~~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE~-G~~~GiVT~eDileeivgei~de~d~~~~~i~~~  328 (408)
T TIGR03520       254 NFDWQSLLR---EPYFVPENKKLD-DLLRDFQEKKNHLAIVVDEY-GGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI  328 (408)
T ss_pred             CCCHHHHcC---CCeEeCCCCcHH-HHHHHHHhcCceEEEEEcCC-CCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEe
Confidence            345788886   467899999999 99999999999999999875 889999999999875321   1111 111111  


Q ss_pred             -cccceecCCCCCchhHHHHHHHHHh
Q 022005          277 -RRIPRYLISLGKCSCALFRSLSLFS  301 (304)
Q Consensus       277 -~~~~~v~~~~~~~~~~l~~~l~~m~  301 (304)
                       ...+.++..++     +.++-+.|.
T Consensus       329 ~~~~~~v~G~~~-----l~~l~~~l~  349 (408)
T TIGR03520       329 DDNNYVFEGKTS-----LKDFYKILK  349 (408)
T ss_pred             CCCeEEEEeccC-----HHHHHHHhC
Confidence             23466888888     998888774

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.73  E-value=0.00064  Score=66.89  Aligned_cols=94  Identities=21%  Similarity=0.328  Sum_probs=72.7

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCC----cEEEEEEechhcccCC------c----
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPT----NIIGLILVKNLLTIHP------E----  266 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~----~ivGiv~~kDll~~~~------~----  266 (304)
                      +++++++|+|.+  ++++++.-+.+. .+.+.+..+.|..|||+|+..+    ++.|++-.+.++....      +    
T Consensus       579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~  655 (762)
T KOG0474|consen  579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST  655 (762)
T ss_pred             hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence            356789999986  899999999998 8999999999999999987543    6788887777642100      0    


Q ss_pred             ----------------c----------------ccCcccccccccceecCCCCCchhHHHHHHHHHhh
Q 022005          267 ----------------D----------------EVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFST  302 (304)
Q Consensus       267 ----------------~----------------~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~  302 (304)
                                      .                -.++..+|-..|++||++++     +..++..|++
T Consensus       656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mS-----l~k~~~lFR~  718 (762)
T KOG0474|consen  656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMS-----LAKAFILFRQ  718 (762)
T ss_pred             cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccc-----hHHHHHHHHH
Confidence                            0                02455555556899999999     9999999875

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=96.09  E-value=0.0045  Score=60.00  Aligned_cols=61  Identities=18%  Similarity=0.341  Sum_probs=53.8

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       200 ~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .-++..++|+|.+  ++++++++++-+ ++.+.+.++.....||+|++ ++++|+++..|++...
T Consensus       192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi  252 (451)
T COG2239         192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVI  252 (451)
T ss_pred             CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHH
Confidence            4456789999986  488999999998 99999999999999999875 8999999999998754

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.03  E-value=0.019  Score=55.17  Aligned_cols=91  Identities=12%  Similarity=0.039  Sum_probs=68.9

Q ss_pred             ccccccccccce-EEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCccccccccccee
Q 022005          204 KTASDAMTPIAE-TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRY  282 (304)
Q Consensus       204 ~~V~diMtpr~~-v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v  282 (304)
                      .++.++|.+... .+...++.+.. ++++.+.+.+.+...|+|++ +++.|+++.+++.+...+ ..++.+.+.....++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  350 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV  350 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence            567888854221 12334566777 89999999999999999865 899999999999765433 235666656677889


Q ss_pred             cCCCCCchhHHHHHHHHHhh
Q 022005          283 LISLGKCSCALFRSLSLFST  302 (304)
Q Consensus       283 ~~~~~~~~~~l~~~l~~m~~  302 (304)
                      +++++     +.+++..|.+
T Consensus       351 ~~~~~-----~~~~~~~~~~  365 (400)
T PRK10070        351 DAQTP-----LSELLSHVGQ  365 (400)
T ss_pred             CCCCC-----HHHHHHHHHh
Confidence            99999     9999998864

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=95.87  E-value=0.0088  Score=55.41  Aligned_cols=58  Identities=16%  Similarity=0.353  Sum_probs=51.7

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      ++.++..+|+.  +++++.+.+|+. .+...|.-.|+.-+||++++ .+++|+++.+|+++.
T Consensus       247 ~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~  304 (432)
T COG4109         247 PSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKS  304 (432)
T ss_pred             CCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHH
Confidence            45688999985  678999999999 89999999999999999875 899999999999874

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=95.62  E-value=0.0097  Score=47.93  Aligned_cols=35  Identities=17%  Similarity=0.238  Sum_probs=31.1

Q ss_pred             ceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCC
Q 022005          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPT  249 (304)
Q Consensus       214 ~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~  249 (304)
                      .+++++++++++. ++++.|.+++.+++||++++.+
T Consensus        86 ~~~~~v~~~~~l~-ea~~~m~~~~~~~lPVvd~~~~  120 (133)
T cd04592          86 CGLWTCTPDTDLT-TAKKLMEAKGVKQLPVVKRGVD  120 (133)
T ss_pred             CCCEEECCCCCHH-HHHHHHHHcCCCcCCEecCCcC
Confidence            4688999999998 9999999999999999986543

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=95.53  E-value=0.012  Score=48.59  Aligned_cols=60  Identities=15%  Similarity=0.283  Sum_probs=45.1

Q ss_pred             hccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005          199 LELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       199 l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~  265 (304)
                      =++.+.+|+++|--  ...++++|.+++  ++..+.+ +|...-|.+  +|+++||++..|+++...
T Consensus       125 e~i~~~~vr~vM~e--~fP~Vs~~~~l~--vI~~LL~-~~~AVlV~e--~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         125 ESIRSLRVREVMGE--PFPTVSPDESLN--VISQLLE-EHPAVLVVE--NGKVVGIITKADIMKLLA  184 (187)
T ss_pred             cchhhhhHHHHhcC--CCCcCCCCCCHH--HHHHHHh-hCCeEEEEe--CCceEEEEeHHHHHHHHh
Confidence            56788999999963  444799999996  5555554 455567775  389999999999987543

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=95.50  E-value=0.011  Score=55.65  Aligned_cols=59  Identities=15%  Similarity=0.202  Sum_probs=51.6

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      -....+.|+|+++.  ++.+.+.+++ ++-+.+.++.-.++||++++ |+++-++...|+.+.
T Consensus       168 ~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  168 DNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKN  226 (503)
T ss_pred             cccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-Cceeeeeehhhhhhh
Confidence            35567899999965  7889999998 89999999999999999865 999999999999763

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=95.27  E-value=0.018  Score=54.62  Aligned_cols=57  Identities=21%  Similarity=0.408  Sum_probs=49.0

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~  265 (304)
                      ..+.+.|.+  +..++++++++. +++..+.+++++ +||+|++ ++++|+|+..+++....
T Consensus       302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALY  358 (363)
T ss_pred             Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence            468888864  566899999998 999999999999 9999865 89999999999987543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=94.26  E-value=0.037  Score=53.84  Aligned_cols=54  Identities=22%  Similarity=0.362  Sum_probs=42.7

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      +.++.|+|.+  ++.++++++++. ++++.+.+++   .||++++ ++++|+|+.+|+++.
T Consensus       399 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~~~~~~---~~vV~~~-g~liGvvt~~dll~~  452 (454)
T TIGR01137       399 DDAVSKVMSK--KFIQIGEGEKLS-DLSKFLEKNS---SAIVTEE-GKPIGVVTKIDLLSF  452 (454)
T ss_pred             CCCHHHhcCC--CCeEECCcCcHH-HHHHHHHHCC---eeEEEEC-CEEEEEEEHHHHHHh
Confidence            3579999975  567899999998 8999887643   3555544 799999999999864

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=94.11  E-value=0.094  Score=50.05  Aligned_cols=81  Identities=12%  Similarity=0.148  Sum_probs=61.3

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcccc-----C-cccc------ccccccee
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEV-----P-VKSV------TIRRIPRY  282 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~-----~-v~~~------~~~~~~~v  282 (304)
                      ++..+..++++. ++++.|...++|.+||+++. ++.+|++...|+.....+...     . +++.      -..+++++
T Consensus       238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc  315 (381)
T KOG1764|consen  238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC  315 (381)
T ss_pred             hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence            588899999998 99999999999999999875 777999999999765433211     1 2221      01234667


Q ss_pred             cCCCCCchhHHHHHHHHHhh
Q 022005          283 LISLGKCSCALFRSLSLFST  302 (304)
Q Consensus       283 ~~~~~~~~~~l~~~l~~m~~  302 (304)
                      .++.+     +.+++.+|..
T Consensus       316 ~~~ss-----L~~vi~~lv~  330 (381)
T KOG1764|consen  316 RPTST-----LAEVIDKLVA  330 (381)
T ss_pred             eecch-----HHHHHHHHHh
Confidence            78888     9999998865

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=94.06  E-value=0.2  Score=47.57  Aligned_cols=78  Identities=10%  Similarity=0.097  Sum_probs=61.7

Q ss_pred             EEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHHHHH
Q 022005          218 AIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSL  297 (304)
Q Consensus       218 ~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l  297 (304)
                      ...++.+.. ++++.+...+.....|++++ ++..|+++.+++..+.... ..+.+.+.....+++++++     +.+++
T Consensus       254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~  325 (363)
T TIGR01186       254 TKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-QGLQDVLIDDIYTVDAGTL-----LRETV  325 (363)
T ss_pred             eecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-CchhhhhccCCceECCCCc-----HHHHH
Confidence            455666777 89999998899899999865 8999999999987654332 3466666667788999999     99999


Q ss_pred             HHHhhc
Q 022005          298 SLFSTS  303 (304)
Q Consensus       298 ~~m~~~  303 (304)
                      ..|.++
T Consensus       326 ~~~~~~  331 (363)
T TIGR01186       326 RKVLKA  331 (363)
T ss_pred             HHHHhC
Confidence            998753

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.02  E-value=0.11  Score=51.65  Aligned_cols=91  Identities=20%  Similarity=0.251  Sum_probs=63.4

Q ss_pred             ccccccccc---eEEEEeCC-CCccHHHHHHHHhcCCceeeee-eCCCCcEEEEEEechhcccCC------c--------
Q 022005          206 ASDAMTPIA---ETFAIDIN-AKLDKELMNLILEKGHSRVPVY-YEEPTNIIGLILVKNLLTIHP------E--------  266 (304)
Q Consensus       206 V~diMtpr~---~v~~l~~~-~t~~~e~~~~~~~~~~sr~PV~-~~~~~~ivGiv~~kDll~~~~------~--------  266 (304)
                      ..++|-|+.   ....++.+ ++++ |....+.++.|+.|||+ +++.+..+|++..+|+.....      +        
T Consensus       545 ~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~  623 (696)
T KOG0475|consen  545 AIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY  623 (696)
T ss_pred             hhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc
Confidence            455565543   34566665 8998 99999999999999988 455688999999999853110      0        


Q ss_pred             -------------cccCcccccccccceecCCCCCchhHHHHHHHHHhh
Q 022005          267 -------------DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFST  302 (304)
Q Consensus       267 -------------~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~  302 (304)
                                   ...+++++|--.|.+|...++     ...+++.|++
T Consensus       624 f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp-----~~~v~~~F~~  667 (696)
T KOG0475|consen  624 FNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTP-----METVVDLFRK  667 (696)
T ss_pred             cCCCCccccCCCCCCcCceeeccCCcccccccCc-----HHHHHHHHHh
Confidence                         023456664445666777777     8888888764

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=93.95  E-value=0.066  Score=51.09  Aligned_cols=52  Identities=15%  Similarity=0.263  Sum_probs=46.0

Q ss_pred             cccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          211 TPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       211 tpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ....+++++.++.|+. ++++.+..++..|+.|+|++ |.++|+++..|++...
T Consensus       307 ~~~~~vvtc~~~ssL~-~vi~~lv~~~vHRl~VVd~~-~~l~GvvSLsDil~~l  358 (381)
T KOG1764|consen  307 IRFEGVVTCRPTSTLA-EVIDKLVAHRVHRLWVVDED-GVLVGVISLSDILSYL  358 (381)
T ss_pred             cccCccEEEeecchHH-HHHHHHHhcCceEEEEEcCC-CcEEEEeeHHHHHHHH
Confidence            3445689999999999 99999999999999999875 8999999999998753

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=93.82  E-value=0.049  Score=52.32  Aligned_cols=58  Identities=24%  Similarity=0.346  Sum_probs=48.3

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~  265 (304)
                      +..++++|.+  +..++++++++. +++..+.++.+. +||+|++ |+++|+|+..++++...
T Consensus       336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALD  393 (400)
T ss_pred             CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence            3467788864  566899999998 999999988777 9999864 99999999999987653

>PRK11573 hypothetical protein; Provisional

Probab=93.47  E-value=0.2  Score=48.32  Aligned_cols=78  Identities=14%  Similarity=0.020  Sum_probs=56.4

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----c-c----cCcccccccccceecCC
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----D-E----VPVKSVTIRRIPRYLIS  285 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~-~----~~v~~~~~~~~~~v~~~  285 (304)
                      ++..++.+.++. ++++.|++++..-.-|+|+. |...|+|+..|++...-+    + +    .++.+. -...+.++..
T Consensus       263 ~~~~Vpe~~~l~-~lL~~~~~~~~~~AiVvDEy-G~~~GiVTleDilEeivGei~de~d~~~~~~i~~~-~~~~~~v~G~  339 (413)
T PRK11573        263 EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQ-NDGSVIIDGT  339 (413)
T ss_pred             CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEecC-CCeEEEeeHHHHHHHHhCCCCcccCcccccceEEe-cCCEEEEEee
Confidence            567899999999 99999998877666788865 889999999999874321    1 1    112222 1234668888


Q ss_pred             CCCchhHHHHHHHHH
Q 022005          286 LGKCSCALFRSLSLF  300 (304)
Q Consensus       286 ~~~~~~~l~~~l~~m  300 (304)
                      ++     ++++-+.+
T Consensus       340 ~~-----l~d~~~~l  349 (413)
T PRK11573        340 AN-----VREINKAF  349 (413)
T ss_pred             eE-----HHHHHHHh
Confidence            88     88887765

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=87.90  E-value=1.3  Score=41.70  Aligned_cols=58  Identities=17%  Similarity=0.213  Sum_probs=46.3

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      .+-.|++.--.+++++|..+++. +.+..+.+.+-.---|+|+- |++.|+|+..|++..
T Consensus       265 ~~k~d~~~~a~epyFVPe~Tpl~-~QL~~F~~~k~hialVVDEY-G~i~GLVTLEDIlEE  322 (423)
T COG4536         265 FTKEDILRAADEPYFVPEGTPLS-DQLVAFQRNKKHIALVVDEY-GDIQGLVTLEDILEE  322 (423)
T ss_pred             ccHhHHHHHhcCCeecCCCCcHH-HHHHHHHHhcceEEEEEecc-CcEEeeeeHHHHHHH
Confidence            45566776667899999999998 88888886665555677764 899999999999874

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=86.59  E-value=2.2  Score=41.35  Aligned_cols=99  Identities=12%  Similarity=0.016  Sum_probs=63.4

Q ss_pred             HHHHHhhhhcccc-ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc---
Q 022005          191 ETTIIAGALELTE-KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---  266 (304)
Q Consensus       191 e~~~i~~~l~l~~-~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---  266 (304)
                      -++++....+-+. ...+..+.   ++..++++.++. ++++.|++++-.-.-|+|+. |.+.|+|+..|++...-+   
T Consensus       258 ~Kdll~~~~~~~~~~~~~~~~~---~~~~Vpet~~~~-~lL~~~r~~~~hmAiVvDEy-G~~~GlVTleDIiEeIvGei~  332 (429)
T COG1253         258 VKDLLRALLDGQSDLDLRVLVR---PPLFVPETLSLS-DLLEEFREERTHMAIVVDEY-GGVEGLVTLEDIIEEIVGEIP  332 (429)
T ss_pred             HHHHHHHHhcCccccchhhccc---CCeEecCCCcHH-HHHHHHHHhCCeEEEEEEcC-CCeEEEeEHHHHHHHHhCCCc
Confidence            3445555544432 22332222   677899999999 99999997766556677765 899999999999875322   


Q ss_pred             ---c---ccCcccccccccceecCCCCCchhHHHHHHHHH
Q 022005          267 ---D---EVPVKSVTIRRIPRYLISLGKCSCALFRSLSLF  300 (304)
Q Consensus       267 ---~---~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m  300 (304)
                         +   ...+.+. ..+-+.+...++     +.++-+.+
T Consensus       333 de~d~~~~~~~~~~-~~~~~~v~G~~~-----l~e~~~~l  366 (429)
T COG1253         333 DEHDEDEEEDIIQR-DDDGWLVDGRVP-----LEELEELL  366 (429)
T ss_pred             CcccccccccceEe-cCCcEEEecccc-----HHHHHHHh
Confidence               1   1122221 122356888888     88776655

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=86.13  E-value=0.8  Score=45.82  Aligned_cols=54  Identities=17%  Similarity=0.289  Sum_probs=46.8

Q ss_pred             ccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       206 V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      ....|.|  .+.+++.++++. .+...++.-|..++-|+.+. .+++|+++.+|+.+.
T Consensus       692 l~p~~n~--sPytV~~~mSl~-k~~~lFR~lGLRhLlVv~~~-~~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  692 LHPFMNP--SPYTVPETMSLA-KAFILFRQLGLRHLLVVPKT-NRVVGILTRKDLARY  745 (762)
T ss_pred             cccccCC--CCcccCcccchH-HHHHHHHHhcceeEEEecCC-CceeEEEehhhhhhH
Confidence            4567776  667899999999 89999999999999999864 789999999999854

>PF00571 CBS: CBS domain CBS domain web page

Probab=85.53  E-value=0.52  Score=31.30  Aligned_cols=28  Identities=11%  Similarity=-0.002  Sum_probs=24.3

Q ss_pred             cccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          271 VKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       271 v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++|.+++.+++++++     +.++++.|+++
T Consensus         1 v~~~m~~~~~~v~~~~~-----l~~~~~~~~~~   28 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDS-----LEEALEIMRKN   28 (57)
T ss_dssp             HHHHSBSSSEEEETTSB-----HHHHHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCc-----HHHHHHHHHHc
Confidence            35678889999999999     99999999864

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=82.79  E-value=1  Score=43.03  Aligned_cols=54  Identities=13%  Similarity=0.206  Sum_probs=42.8

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .++.+ +  .++..++++++++. +++....++++. +||++ + |+++|+|+..+++...
T Consensus       326 ~~~~~-~--~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~  379 (382)
T TIGR03415       326 QEVES-L--EAAPTVINPDTLMR-DVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHAL  379 (382)
T ss_pred             cchhh-h--cccCcccCCCCcHH-HHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHH
Confidence            34555 3  23667899999998 999998888876 78887 3 8999999999988754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	304
3jtf_A	129	The Cbs Domain Pair Structure Of A Magnesium And Co		9e-06
4hg0_A	292	Crystal Structure Of Magnesium And Cobalt Efflux Pr		5e-05
3lhh_A	172	The Crystal Structure Of Cbs Domain Protein From Sh		5e-04

>pdb|3JTF|A Chain A, The Cbs Domain Pair Structure Of A Magnesium And Cobalt Efflux Protein From Bordetella Parapertussis In Complex With Amp Length = 129

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262
           E+T +D   P +    +DI+  L  +L+  I+E  HSR PVY ++  NIIG++L K+LL 
Sbjct: 4   ERTVADIXVPRSRXDLLDISQPL-PQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLR 62
Query: 263 IHPEDEVPVKSV 274
              E  + ++S+
Sbjct: 63  YXLEPALDIRSL 74

>pdb|4HG0|A Chain A, Crystal Structure Of Magnesium And Cobalt Efflux Protein Corc, Northeast Structural Genomics Consortium (nesg) Target Er40 Length = 292

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 167 RAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226
           R EL  L+     ++G+   +  D    + G  ++ ++   D   P ++   +  N  LD
Sbjct: 34  RDELLALIR----DSGQNDLIDEDTRDXLEGVXDIADQRVRDIXIPRSQXITLKRNQTLD 89
Query: 227 KELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLL 261
            E +++I+E  HSR PV  E+  +I G++  K+LL
Sbjct: 90  -ECLDVIIESAHSRFPVISEDKDHIEGILXAKDLL 123

>pdb|3LHH|A Chain A, The Crystal Structure Of Cbs Domain Protein From Shewanella Oneidensis Mr-1 Length = 172

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 180 EAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHS 239
           E    G + H+E   +     L E+T S    P ++   +D+N  LD  L   + +  HS
Sbjct: 18  EGSSAGVIEHNEHAXVKNVFRLDERTISSLXVPRSDIVFLDLNLPLDANLRT-VXQSPHS 76
Query: 240 RVPVYYEEPTNIIGLILVKNLLT 262
           R PV      + +G+I  K LL+
Sbjct: 77  RFPVCRNNVDDXVGIISAKQLLS 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	304
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	1e-22
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	4e-22
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	9e-21
3ocm_A	173	Putative membrane protein; structural genomics, PS	1e-20
3oco_A	153	Hemolysin-like protein containing CBS domains; str	2e-19
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	9e-17
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	6e-16
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	1e-15
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	3e-15
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	2e-14

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Length = 156

 Score = 91.0 bits (227), Expect = 1e-22
 Identities = 20/109 (18%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 167 RAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226
             ++  L+     +A +      D    +   L+ ++    DAM   +    +  N  ++
Sbjct: 5   AEDVLNLLR----QAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE 60

Query: 227 KELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT-IHPEDEVPVKSV 274
             +   +++  HSR PV  E+   ++G++  K+LL  +   ++  +KS+
Sbjct: 61  -RITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPEQFHLKSI 108

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172

 Score = 89.8 bits (224), Expect = 4e-22
 Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 9/115 (7%)

Query: 167 RAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226
           + +++ ++     E    G + H+E  ++     L E+T S  M P ++   +D+N  LD
Sbjct: 9   QEDIQAMLQ----EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD 64

Query: 227 KELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR 281
              +  +++  HSR PV      +++G+I  K LL+     E     + +  + +
Sbjct: 65  -ANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE----RLELVDLVK 114

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Length = 148

 Score = 85.6 bits (213), Expect = 9e-21
 Identities = 17/93 (18%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 183 KGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVP 242
             G +   E  ++    E  EK   + M P  +   I  +   + +++ ++ E+G +R P
Sbjct: 2   NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYP 60

Query: 243 VYYEEPTNIIGLILVKNLLT-IHPEDEVPVKSV 274
           V  +   +I+G + +++L      E+++ ++ +
Sbjct: 61  VCRKNKDDILGFVHIRDLYNQKINENKIELEEI 93

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173

 Score = 86.0 bits (214), Expect = 1e-20
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 180 EAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHS 239
                     +E  +++G L L E++    MTP  +   ++I+      +   +    HS
Sbjct: 12  AMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHS 70

Query: 240 RVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSV 274
             PV       ++G+   K+L+     +    ++ 
Sbjct: 71  FFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRNR 105

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Length = 153

 Score = 82.1 bits (204), Expect = 2e-19
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 186 ELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYY 245
               ++   +  A E+ +K ASD M        +D++  +  + + L LE+ +SR PV  
Sbjct: 2   NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTA 60

Query: 246 EEPT-NIIGLILVKNLLT-IHPEDEVPVKSV 274
           +     IIG     +++     +D+  + ++
Sbjct: 61  DNDKDKIIGYAYNYDIVRQARIDDKAKISTI 91

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Length = 129

 Score = 74.0 bits (183), Expect = 9e-17
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNL 260
             E+T +D M P +    +DI+  L  +L+  I+E  HSR PVY ++  NIIG++L K+L
Sbjct: 2   NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDL 60

Query: 261 LTIHPEDEVPVKSV 274
           L    E  + ++S+
Sbjct: 61  LRYMLEPALDIRSL 74

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} Length = 130

 Score = 72.1 bits (178), Expect = 6e-16
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT 262
           + + +D M P  E   IDIN      ++  +    H R+ +Y +   + I ++ V+    
Sbjct: 1   KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYR 59

Query: 263 IHPEDEVPVKSVTIRRIPR 281
           +  E +       + R   
Sbjct: 60  LMTEKK-EFTKEIMLRAAD 77

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Length = 130

 Score = 71.3 bits (176), Expect = 1e-15
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNL 260
             +   +  MTP    F +D    ++ E ++   +   SR  VY E+  NIIG +    L
Sbjct: 3   AQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLEL 61

Query: 261 LTIHPEDEVPVKSVTIRRIPR 281
             +            +  + R
Sbjct: 62  FKMQQSGS---GQKQLGAVMR 79

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Length = 136

 Score = 70.2 bits (173), Expect = 3e-15
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLL- 261
           +    D M P ++  +I        E +  +++  HSR PV  E   +++G++L K+LL 
Sbjct: 2   DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLP 60

Query: 262 --TIHPEDEVPVKSV 274
                  D   VK +
Sbjct: 61  LILKADGDSDDVKKL 75

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Length = 127

 Score = 67.4 bits (166), Expect = 2e-14
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLL- 261
           ++   D M P ++   +  N  LD E +++I+E  HSR PV  E+  +I G+++ K+LL 
Sbjct: 2   DQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLP 60

Query: 262 -TIHPEDEVPVKSV 274
                 +   +  V
Sbjct: 61  FMRSDAEAFSMDKV 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	304
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.86
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.82
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.76
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.74
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.65
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.59
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.57
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.55
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.54
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.53
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.51
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.51
4esy_A	170	CBS domain containing membrane protein; structural	99.46
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.46
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.43
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.42
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.4
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.4
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.39
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.38
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.37
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.35
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.32
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.3
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.29
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.29
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.28
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.27
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.26
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.25
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.25
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.25
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.22
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.21
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.21
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.2
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.19
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.18
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.16
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.16
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.16
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.16
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.15
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.12
3ddj_A	296	CBS domain-containing protein; structural genomics	99.12
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.11
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.1
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.09
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.07
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.04
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.02
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.0
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.0
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.97
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.95
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.95
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.91
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.89
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.88
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.83
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.8
3ddj_A	296	CBS domain-containing protein; structural genomics	98.79
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	98.78
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.75
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.63
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.58
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.58
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.56
4esy_A	170	CBS domain containing membrane protein; structural	98.51
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.48
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.39
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.38
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.38
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.37
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.37
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.34
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.29
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.28
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.28
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.27
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.27
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.27
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.25
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.24
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.23
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.23
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.22
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.22
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.22
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.22
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.21
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.2
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.2
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.19
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.19
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.19
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.18
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.13
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.13
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.09
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.09
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.09
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.06
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.03
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.01
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	97.98
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	97.95
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	97.93
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.9
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.85
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	97.84
2oux_A	286	Magnesium transporter; 10001B, structural genomics	97.81
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	97.79
3ocm_A	173	Putative membrane protein; structural genomics, PS	97.74
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.66
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.66
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.62
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	97.61
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.41
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	97.38
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.3
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.29
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	97.14
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.0
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	96.9

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.86  E-value=1.3e-21  Score=161.45  Aligned_cols=129  Identities=19%  Similarity=0.264  Sum_probs=116.1

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeee
Q 022005          164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPV  243 (304)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV  243 (304)
                      .+|++||+.+++.    +.++|.++++|++++++++++.+.+|+|+|+|+.+++++++++++. ++++.+.+++++++||
T Consensus         2 ~~t~~el~~li~~----~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~-~a~~~m~~~~~~~~pV   76 (156)
T 3oi8_A            2 NASAEDVLNLLRQ----AHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAHSRFPV   76 (156)
T ss_dssp             CCCHHHHHHHHHH----HHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEE
T ss_pred             CCCHHHHHHHHHh----HHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHH-HHHHHHHHCCCCEEEE
Confidence            4789999999984    4557999999999999999999999999999998999999999998 9999999999999999


Q ss_pred             eeCCCCcEEEEEEechhcccCCc-cccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          244 YYEEPTNIIGLILVKNLLTIHPE-DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       244 ~~~~~~~ivGiv~~kDll~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++.|+++|+|+.+|+++...+ ...+++++| +++.+++++++     +.++++.|+++
T Consensus        77 vd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~-----l~~a~~~m~~~  131 (156)
T 3oi8_A           77 IGEDKDEVLGILHAKDLLKYMFNPEQFHLKSIL-RPAVFVPEGKS-----LTALLKEFREQ  131 (156)
T ss_dssp             ESSSTTCEEEEEEGGGGGGGSSCGGGCCHHHHC-BCCCEEETTSB-----HHHHHHHHHHT
T ss_pred             EcCCCCcEEEEEEHHHHHHHHHcCCcccHHHHc-CCCEEECCCCC-----HHHHHHHHHhc
Confidence            98754699999999999987543 456899995 78999999999     99999999764

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.82  E-value=4.5e-21  Score=160.78  Aligned_cols=130  Identities=22%  Similarity=0.399  Sum_probs=82.9

Q ss_pred             ccccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceee
Q 022005          163 ALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVP  242 (304)
Q Consensus       163 ~~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~P  242 (304)
                      +.+|++||+.+++    ++.++|.++++|++++++++.+.+.+|+|+|+|+.+++++++++|+. ++++.+.+++++++|
T Consensus         5 ~~~t~~el~~l~~----~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~p   79 (172)
T 3lhh_A            5 DNVTQEDIQAMLQ----EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPHSRFP   79 (172)
T ss_dssp             ------------------------------------------CTTTTSEEGGGCCCEETTSCHH-HHHHHHHTCCCSEEE
T ss_pred             ccCCHHHHHHHHH----HHHHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEE
Confidence            4689999999998    45567999999999999999999999999999999999999999998 999999999999999


Q ss_pred             eeeCCCCcEEEEEEechhcccCC-ccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          243 VYYEEPTNIIGLILVKNLLTIHP-EDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       243 V~~~~~~~ivGiv~~kDll~~~~-~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      |++++.++++|+|+.+|+++... +...+++++| +++.+++++++     +.++++.|+++
T Consensus        80 Vvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~-----l~~a~~~m~~~  135 (172)
T 3lhh_A           80 VCRNNVDDMVGIISAKQLLSESIAGERLELVDLV-KNCNFVPNSLS-----GMELLEHFRTT  135 (172)
T ss_dssp             EESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGC-BCCEEEETTCC-----HHHHHHHHHHH
T ss_pred             EEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHh-cCCeEeCCCCC-----HHHHHHHHHHc
Confidence            99864489999999999987643 2356899997 99999999999     99999999764

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.76  E-value=4.6e-19  Score=144.33  Aligned_cols=114  Identities=18%  Similarity=0.371  Sum_probs=88.7

Q ss_pred             CCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          183 KGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       183 ~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      ++|.++++|++++++++++.+.+|+|+|+|+.+++++++++++. ++++.+.+++++++||++++.|+++|+++.+|+++
T Consensus         2 ~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~   80 (148)
T 3lv9_A            2 NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYN   80 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHH-HHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHH
T ss_pred             CCCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHH-HHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHH
Confidence            35899999999999999999999999999999999999999998 99999999999999999864479999999999987


Q ss_pred             cCCcc-ccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          263 IHPED-EVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       263 ~~~~~-~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ...++ ..++.++| +++.+++++++     +.++++.|+++
T Consensus        81 ~~~~~~~~~v~~~m-~~~~~v~~~~~-----l~~~~~~m~~~  116 (148)
T 3lv9_A           81 QKINENKIELEEIL-RDIIYISENLT-----IDKALERIRKE  116 (148)
T ss_dssp             HHHHHSCCCGGGTC-BCCEEEETTSB-----HHHHHHHHHHH
T ss_pred             HHhcCCCccHHHhc-CCCeEECCCCC-----HHHHHHHHHhc
Confidence            64332 56899997 99999999999     99999999764

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.74  E-value=2.2e-18  Score=144.95  Aligned_cols=115  Identities=20%  Similarity=0.273  Sum_probs=99.4

Q ss_pred             ccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechh
Q 022005          181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNL  260 (304)
Q Consensus       181 ~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDl  260 (304)
                      ++++|.++++|++++++++++.+.+|+|+|+|+.+++++++++++. ++++.+.+++++++||++++.|+++|+|+.+|+
T Consensus        13 ~~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl   91 (173)
T 3ocm_A           13 MPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDL   91 (173)
T ss_dssp             -----CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHH-HHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHH
T ss_pred             HHhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHH-HHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHH
Confidence            3456999999999999999999999999999999999999999998 999999999999999998655799999999999


Q ss_pred             cccCC-ccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          261 LTIHP-EDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       261 l~~~~-~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +.... +...++.  |++++.+++++++     +.++++.|+++
T Consensus        92 ~~~~~~~~~~~v~--~~~~~~~v~~~~~-----l~~al~~m~~~  128 (173)
T 3ocm_A           92 VADLITEGRVRRN--RLRDPIIVHESIG-----ILRLMDTLKRS  128 (173)
T ss_dssp             HHHHHHHSSCCGG--GSBCCCEECGGGC-----HHHHHHHHHHS
T ss_pred             HHHHhcCCcchhH--hcCCCeEECCCCc-----HHHHHHHHHHc
Confidence            87542 2345677  4799999999999     99999999764

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.65  E-value=1.9e-17  Score=135.68  Aligned_cols=110  Identities=20%  Similarity=0.329  Sum_probs=94.6

Q ss_pred             CChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeee-eCCCCcEEEEEEechhcccCC
Q 022005          187 LTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVY-YEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       187 l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~-~~~~~~ivGiv~~kDll~~~~  265 (304)
                      ++++|++++++++.+++.+|+|+|+|+.+++++++++++. ++++.+.+++++++||+ +++.|+++|+|+.+|+++...
T Consensus         3 l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~   81 (153)
T 3oco_A            3 ADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQAR   81 (153)
T ss_dssp             -----CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHH-HHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHH-HHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHh
Confidence            5678899999999999999999999988999999999998 99999999999999999 544479999999999987542


Q ss_pred             -ccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          266 -EDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       266 -~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                       +...+++++| +++.+++++++     +.++++.|+++
T Consensus        82 ~~~~~~v~~~m-~~~~~v~~~~~-----l~~~~~~m~~~  114 (153)
T 3oco_A           82 IDDKAKISTIM-RDIVSVPENMK-----VPDVMEEMSAH  114 (153)
T ss_dssp             HHTTSBGGGTC-BCCEEEETTSB-----HHHHHHHHHHT
T ss_pred             cCCCCcHHHHh-CCCeEECCCCC-----HHHHHHHHHHc
Confidence             2256899997 99999999999     99999999764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.59  E-value=2.1e-15  Score=119.89  Aligned_cols=95  Identities=34%  Similarity=0.464  Sum_probs=84.9

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccce
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPR  281 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~  281 (304)
                      ++.+|+|+|+|+.+++++++++++. ++++.+.+++++++||++++.|+++|+++.+|+++...++..+++++| +++.+
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~v~~~m-~~~~~   80 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLV-RPAVF   80 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHH-HHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCTTSCGGGGC-BCCCE
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccCCcCHHHHh-CCCeE
Confidence            5789999999999999999999998 999999999999999998645899999999999987655567899995 78999


Q ss_pred             ecCCCCCchhHHHHHHHHHhhc
Q 022005          282 YLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       282 v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++++     +.++++.|+++
T Consensus        81 v~~~~~-----l~~~~~~m~~~   97 (129)
T 3jtf_A           81 IPEVKR-----LNVLLREFRAS   97 (129)
T ss_dssp             EETTCB-----HHHHHHHHHTS
T ss_pred             eCCCCc-----HHHHHHHHHhc
Confidence            999999     99999999764

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.57  E-value=1.1e-15  Score=126.20  Aligned_cols=103  Identities=16%  Similarity=0.204  Sum_probs=86.7

Q ss_pred             HHhhhh-ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc------
Q 022005          194 IIAGAL-ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE------  266 (304)
Q Consensus       194 ~i~~~l-~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~------  266 (304)
                      |+.+.+ ++-..+++++|+|+.+++++++++|++ ++++.+.++||+++||++++ |+++|+++.+|+++....      
T Consensus         4 mi~~~~e~~l~~~~~~iM~P~~~v~~v~~~~t~~-~a~~~m~~~~~s~~pVvd~~-~~lvGiit~~Di~~~~~~~~~~~~   81 (156)
T 3k6e_A            4 MIAKEFETFLLGQEETFLTPAKNLAVLIDTHNAD-HATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHDLSQE   81 (156)
T ss_dssp             HHHHHHHHHHHTTGGGGEEETTSSCCEETTSBHH-HHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCHH
T ss_pred             hHHHHHHHHhhccHHHhCcchhHeEEECCcCCHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEecchhhhhhhcccccc
Confidence            444444 344568999999999999999999998 99999999999999999864 899999999999764211      


Q ss_pred             --cccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          267 --DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       267 --~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                        ...++.++|.+++.+++++++     +.++++.|+++
T Consensus        82 ~~~~~~v~~im~~~~~~v~~~~~-----l~~~~~~m~~~  115 (156)
T 3k6e_A           82 IMADTDIVHMTKTDVAVVSPDFT-----ITEVLHKLVDE  115 (156)
T ss_dssp             HHTTSBGGGTCBCSCCCBCTTCC-----HHHHHHHTTTS
T ss_pred             cccccCHHHhhcCCceecccccH-----HHHHHHHHHHc
Confidence              246899999999999999999     99999999764

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.55  E-value=1.7e-15  Score=120.80  Aligned_cols=94  Identities=19%  Similarity=0.271  Sum_probs=82.2

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc----ccCcccccccc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED----EVPVKSVTIRR  278 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~----~~~v~~~~~~~  278 (304)
                      +++|+|+|+|+.+++++++++++. ++++.+.+++++++||++++.|+++|+++.+|+++...++    ..+++++| ++
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m-~~   78 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAA-DE   78 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHH-HHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHS-BC
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHH-HHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhc-cC
Confidence            368999999999999999999998 9999999999999999976558999999999998764332    24688885 89


Q ss_pred             cceecCCCCCchhHHHHHHHHHhhc
Q 022005          279 IPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       279 ~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +.+++++++     +.++++.|+++
T Consensus        79 ~~~v~~~~~-----l~~~~~~m~~~   98 (130)
T 3hf7_A           79 IYFVPEGTP-----LSTQLVKFQRN   98 (130)
T ss_dssp             CCEEETTCB-----HHHHHHHHHHH
T ss_pred             CeEeCCCCc-----HHHHHHHHHhc
Confidence            999999999     99999999764

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.54  E-value=9.4e-15  Score=117.22  Aligned_cols=94  Identities=26%  Similarity=0.347  Sum_probs=82.6

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC---ccccCccccccccc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIRRI  279 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~---~~~~~v~~~~~~~~  279 (304)
                      +.+|+|+|+|+.+++++++++|+. ++++.+.+++++++||++++.|+++|+++.+|+++...   ....+++++| +++
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m-~~~   79 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLL-RPA   79 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTC-BCC
T ss_pred             CCChHhccccHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHc-CCC
Confidence            678999999999999999999998 99999999999999999865479999999999997643   2356899995 779


Q ss_pred             ceecCCCCCchhHHHHHHHHHhhc
Q 022005          280 PRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       280 ~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .+++++++     +.++++.|+++
T Consensus        80 ~~v~~~~~-----l~~~~~~m~~~   98 (136)
T 3lfr_A           80 TFVPESKR-----LNVLLREFRAN   98 (136)
T ss_dssp             CEEETTCB-----HHHHHHHHHHH
T ss_pred             eEECCCCc-----HHHHHHHHHhc
Confidence            99999999     99999999764

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.53  E-value=2.6e-15  Score=119.39  Aligned_cols=97  Identities=23%  Similarity=0.338  Sum_probs=81.9

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc--cccCccccccc
Q 022005          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIR  277 (304)
Q Consensus       200 ~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~~~~~  277 (304)
                      ++++.+|+|+|+|+.+++++++++++. ++++.+.+++++++||++++.|+++|+++.+|+++...+  ...+++++| +
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m-~   79 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVM-R   79 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHH-HHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHS-E
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHh-c
Confidence            467889999999998999999999998 999999999999999998655899999999999876422  256889996 8


Q ss_pred             ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          278 RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       278 ~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++.+++++++     +.++++.|+++
T Consensus        80 ~~~~v~~~~~-----l~~~~~~m~~~  100 (130)
T 3i8n_A           80 PIQVVLNNTA-----LPKVFDQMMTH  100 (130)
T ss_dssp             ECCEEETTSC-----HHHHHHHHHHH
T ss_pred             CCcCcCCCCc-----HHHHHHHHHHc
Confidence            8999999999     99999999764

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.51  E-value=9.1e-14  Score=119.80  Aligned_cols=106  Identities=8%  Similarity=0.087  Sum_probs=95.8

Q ss_pred             CChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhc---CCceeeeeeCCCCcEEEEEEechhccc
Q 022005          187 LTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEK---GHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       187 l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~---~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      ++++|++++++++.+++.+|+++|+|  +++++++++|+. ++++.+.++   +++.+||++++ |+++|+|+.+|++..
T Consensus        37 l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-eal~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~  112 (205)
T 3kxr_A           37 MGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVA-QAQRFFRRIELDCNDNLFIVDEA-DKYLGTVRRYDIFKH  112 (205)
T ss_dssp             SCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHH-HHHHHHHHCCCTTCCEEEEECTT-CBEEEEEEHHHHTTS
T ss_pred             CCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHH-HHHHHHHhhCccCeeEEEEEcCC-CeEEEEEEHHHHHhC
Confidence            68899999999999999999999997  788999999998 999999987   78999999864 899999999999875


Q ss_pred             CCccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          264 HPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       264 ~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ..  ..+++++|.+++.+++++++     +.++++.|+++
T Consensus       113 ~~--~~~v~~im~~~~~~v~~~~~-----l~~a~~~m~~~  145 (205)
T 3kxr_A          113 EP--HEPLISLLSEDSRALTANTT-----LLDAAEAIEHS  145 (205)
T ss_dssp             CT--TSBGGGGCCSSCCCEETTSC-----HHHHHHHHHTS
T ss_pred             CC--cchHHHHhcCCCeEECCCCC-----HHHHHHHHHhc
Confidence            33  45899998889999999999     99999999764

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.51  E-value=1.8e-14  Score=113.99  Aligned_cols=95  Identities=27%  Similarity=0.429  Sum_probs=82.2

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC--ccccCccccccccc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP--EDEVPVKSVTIRRI  279 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~--~~~~~v~~~~~~~~  279 (304)
                      ++.+|+|+|+|+.+++++++++++. ++++.+.+++++++||++++.|+++|+++.+|+++...  ....+++++| +++
T Consensus         1 ~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m-~~~   78 (127)
T 3nqr_A            1 ADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-RTA   78 (127)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHC-BCC
T ss_pred             CCcCHHHhcccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHc-CCC
Confidence            3678999999988899999999998 99999999999999999865479999999999997642  2356889995 778


Q ss_pred             ceecCCCCCchhHHHHHHHHHhhc
Q 022005          280 PRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       280 ~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .+++++++     +.++++.|+++
T Consensus        79 ~~v~~~~~-----l~~a~~~m~~~   97 (127)
T 3nqr_A           79 VVVPESKR-----VDRMLKEFRSQ   97 (127)
T ss_dssp             CEEETTCB-----HHHHHHHHHHT
T ss_pred             eEECCCCc-----HHHHHHHHHhc
Confidence            99999999     99999999764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.46  E-value=1.3e-13  Score=114.71  Aligned_cols=102  Identities=15%  Similarity=0.178  Sum_probs=85.7

Q ss_pred             HHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----
Q 022005          191 ETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----  266 (304)
Q Consensus       191 e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----  266 (304)
                      ++..+.+.  +++++|+|+|++  +++++++++|+. ++++.|.+++++++||+|++ |+++|+|+.+|+++....    
T Consensus         7 ~~~~~~~~--l~~~~V~diM~~--~v~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~~   80 (170)
T 4esy_A            7 RRRAIARA--IRQVPIRDILTS--PVVTVREDDTLD-AVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWIY   80 (170)
T ss_dssp             HHHHHHHH--HHTSBGGGGCCS--CCCCEETTSBHH-HHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTHH
T ss_pred             HHHHHHHH--HcCCCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhcccc
Confidence            34444443  467899999986  788999999999 99999999999999999865 899999999999864321    


Q ss_pred             ----------------------cccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          267 ----------------------DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       267 ----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                                            ...+++++|.+++.+++++++     +.++++.|.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~-----l~~a~~~m~~~  134 (170)
T 4esy_A           81 EASEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDS-----VGSIADQMRRH  134 (170)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSB-----HHHHHHHHHHT
T ss_pred             chhhhhhhccchhhHHhhhccccccchhhhcccCcccCCcchh-----HHHHHHHHHHc
Confidence                                  134788999999999999999     99999999764

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.46  E-value=4.8e-14  Score=129.34  Aligned_cols=113  Identities=10%  Similarity=0.138  Sum_probs=93.7

Q ss_pred             CCCChhHHHHHhhhhcc-ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          185 GELTHDETTIIAGALEL-TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       185 g~l~~~e~~~i~~~l~l-~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      +.++++|++++++++++ ++.+|+|+|+|+.+++++++++|+. ++++.+.+++|+++||++++.|+++|+++.+|++..
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~-~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~   80 (334)
T 2qrd_G            2 MDVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNV   80 (334)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHH-HHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHH
Confidence            34677899999999985 4599999999999999999999998 999999999999999999766899999999999863


Q ss_pred             C--------Ccc------ccCccc-------cccccc--ceecCCCCCchhHHHHHHHHHhhc
Q 022005          264 H--------PED------EVPVKS-------VTIRRI--PRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       264 ~--------~~~------~~~v~~-------~~~~~~--~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .        ...      ..++.+       +|.+++  .+++++++     +.++++.|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~-----~~~a~~~~~~~  138 (334)
T 2qrd_G           81 IKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHS-----LMDACLAMSKS  138 (334)
T ss_dssp             HHHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSB-----HHHHHHHHHHS
T ss_pred             HHHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCc-----HHHHHHHHHHC
Confidence            2        111      222222       356777  89999999     99999999763

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.43  E-value=2.6e-13  Score=131.08  Aligned_cols=125  Identities=14%  Similarity=0.152  Sum_probs=108.9

Q ss_pred             cccHHHHHHHHHhhcccccCC---------CCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHH
Q 022005          164 LFRRAELKTLVNLHGNEAGKG---------GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLIL  234 (304)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~---------g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~  234 (304)
                      .+++||+..+++..    .++         +.++++|++.+++++++++.+|+++|+|  +++++++++|++ ++++.+.
T Consensus       110 ~l~~dd~~~ll~~l----~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~-ea~~~~~  182 (473)
T 2zy9_A          110 ELSLDDLADALQAV----RKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLR  182 (473)
T ss_dssp             HSCHHHHHHHHHHH----HHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHH-HHHHHHH
T ss_pred             hCCHHHHHHHHHhC----CHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHH-HHHHHHH
Confidence            46788888888742    223         7899999999999999999999999997  899999999998 9999999


Q ss_pred             hc-----CCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          235 EK-----GHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       235 ~~-----~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++     +++++||+|++ ++++|+++.+|++...  .+.+++++|.+++.+++++++     +.++++.|+++
T Consensus       183 ~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~~--~~~~v~dim~~~~~~v~~~~~-----l~ea~~~m~~~  248 (473)
T 2zy9_A          183 RAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVAD--PRTRVAEIMNPKVVYVRTDTD-----QEEVARLMADY  248 (473)
T ss_dssp             HHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHSC--TTSBGGGTSBSSCCCEESSSB-----HHHHHHHHHHH
T ss_pred             hccCCcCceeEEEEECCC-CcEEEEEEHHHHhcCC--CCCcHHHHhCCCCeEEeCCCc-----HHHHHHHHHhc
Confidence            86     47999999865 8999999999998753  356899998789999999999     99999999864

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.42  E-value=2.8e-13  Score=121.94  Aligned_cols=108  Identities=14%  Similarity=0.168  Sum_probs=96.9

Q ss_pred             CCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhc-----CCceeeeeeCCCCcEEEEEEech
Q 022005          185 GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEK-----GHSRVPVYYEEPTNIIGLILVKN  259 (304)
Q Consensus       185 g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~-----~~sr~PV~~~~~~~ivGiv~~kD  259 (304)
                      |.++.+++..+.+++.+.+.+|+++|+|  +++++++++|+. ++++.+.++     +++++||++++ |+++|+|+.+|
T Consensus       116 ~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~d  191 (278)
T 2yvy_A          116 DLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRD  191 (278)
T ss_dssp             HHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHH-HHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEHHH
T ss_pred             HcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHH-HHHHHHHHccCCccceeEEEEECCC-CCEEEEEEHHH
Confidence            4578899999999999999999999997  788999999998 999999987     78999999865 89999999999


Q ss_pred             hcccCCccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          260 LLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       260 ll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++...  ...++.++|.+++.+|+++++     +.++++.|+++
T Consensus       192 ll~~~--~~~~v~~im~~~~~~v~~~~~-----l~~a~~~m~~~  228 (278)
T 2yvy_A          192 LIVAD--PRTRVAEIMNPKVVYVRTDTD-----QEEVARLMADY  228 (278)
T ss_dssp             HHHSC--TTCBSTTTSBSSCCCEETTSB-----HHHHHHHHHHH
T ss_pred             HhcCC--CCCcHHHHhCCCCeEEeCCCC-----HHHHHHHHHhc
Confidence            98653  346899998789999999999     99999999764

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.40  E-value=2.9e-13  Score=110.55  Aligned_cols=102  Identities=20%  Similarity=0.283  Sum_probs=83.5

Q ss_pred             HhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc--------
Q 022005          195 IAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------  266 (304)
Q Consensus       195 i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--------  266 (304)
                      .++...+.+.+|+|+|+|+.+++++++++++. ++++.+.+++++++||++++ |+++|+++.+|+++....        
T Consensus         2 ~~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~   79 (157)
T 2emq_A            2 TWEHNEFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTS-YKLHGLISMTMMMDAILGLERIEFER   79 (157)
T ss_dssp             --------CCBSTTTCEEGGGSCCBCTTSBHH-HHHHHHHHSSSSEEEEECTT-CCEEEEEEHHHHHHHSBCSSSBCGGG
T ss_pred             chhHhhHhhCcHHhhccCCccceEECCCCcHH-HHHHHHHHCCceEEEEEcCC-CCEEEEeeHHHHHHHHhcccccchHH
Confidence            34556678899999999877888999999998 99999999999999999864 899999999999875432        


Q ss_pred             -cccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          267 -DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       267 -~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                       ...++.++|.+++.+++++++     +.++++.|.++
T Consensus        80 ~~~~~v~~~m~~~~~~v~~~~~-----l~~a~~~m~~~  112 (157)
T 2emq_A           80 LETMKVEEVMNRNIPRLRLDDS-----LMKAVGLIVNH  112 (157)
T ss_dssp             GGTCBGGGTCBCCCCEEETTSB-----HHHHHHHHHHS
T ss_pred             hcCCcHHHHhCCCCceecCCCc-----HHHHHHHHhhC
Confidence             246899998889999999999     99999999764

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.39  E-value=2e-13  Score=110.75  Aligned_cols=99  Identities=19%  Similarity=0.236  Sum_probs=86.0

Q ss_pred             hhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC---------ccc
Q 022005          198 ALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---------EDE  268 (304)
Q Consensus       198 ~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~---------~~~  268 (304)
                      .-.+.+.+|+|+|+|+.+++++++++++. ++++.+.+++++++||++++ |+++|+|+.+|+++...         ...
T Consensus         9 ~~~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~   86 (150)
T 3lqn_A            9 KDEFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYSAIPVLDPM-YKLHGLISTAMILDGILGLERIEFERLEE   86 (150)
T ss_dssp             HHHHHHCBHHHHSEEGGGSCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHTBCSSSBCGGGGGG
T ss_pred             HHhhhcCChhhcccCCCceEEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CCEEEEEEHHHHHHHHHhhcccchhHHhc
Confidence            34567789999999987889999999998 99999999999999999864 89999999999986542         124


Q ss_pred             cCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          269 VPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       269 ~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .++.++|.+++.+++++++     +.++++.|.++
T Consensus        87 ~~v~~~m~~~~~~v~~~~~-----l~~a~~~~~~~  116 (150)
T 3lqn_A           87 MKVEQVMKQDIPVLKLEDS-----FAKALEMTIDH  116 (150)
T ss_dssp             CBGGGTCBSSCCEEETTCB-----HHHHHHHHHHC
T ss_pred             CCHHHHhcCCCceeCCCCC-----HHHHHHHHHhC
Confidence            6899998889999999999     99999999764

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.38  E-value=2.3e-13  Score=110.58  Aligned_cols=93  Identities=18%  Similarity=0.194  Sum_probs=82.1

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----cccCccccccccc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRI  279 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~~~~  279 (304)
                      ++|+|+|+|+.+++++++++++. ++++.+.+++++++||++++ |+++|+|+.+|+++...+    ...++.++|.+++
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~  105 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLR-DALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGG  105 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHH-HHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEESC
T ss_pred             cCHHHHhcCCCCCeEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCCCcccCcHHHHcCCCC
Confidence            58999999877889999999998 99999999999999999864 899999999999875322    2468899988889


Q ss_pred             ceecCCCCCchhHHHHHHHHHhhc
Q 022005          280 PRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       280 ~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .+++++++     +.++++.|.++
T Consensus       106 ~~v~~~~~-----l~~a~~~m~~~  124 (149)
T 3k2v_A          106 IRIRPGTL-----AVDALNLMQSR  124 (149)
T ss_dssp             CEECTTCB-----HHHHHHHHHHH
T ss_pred             eEECCCCC-----HHHHHHHHHHc
Confidence            99999999     99999999763

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.37  E-value=1.9e-13  Score=125.22  Aligned_cols=114  Identities=10%  Similarity=0.228  Sum_probs=88.9

Q ss_pred             cCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhc
Q 022005          182 GKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLL  261 (304)
Q Consensus       182 ~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll  261 (304)
                      +++|.+++.+++.+++.  |.+.+|+|+|+|+.+++++++++|+. ++++.+.+++++++||++++.++++|+++.+|++
T Consensus        15 ~~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~-~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll   91 (330)
T 2v8q_E           15 EHSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI   91 (330)
T ss_dssp             --------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHH
T ss_pred             hHhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHH-HHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHH
Confidence            34577777777778777  56889999999999999999999998 9999999999999999997667999999999997


Q ss_pred             ccCCc------------ccc-------CcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          262 TIHPE------------DEV-------PVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       262 ~~~~~------------~~~-------~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .....            ...       ++.++|.+++.+++++++     +.++++.|+++
T Consensus        92 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~-----~~~a~~~~~~~  147 (330)
T 2v8q_E           92 NILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNAS-----LFDAVSSLIRN  147 (330)
T ss_dssp             HHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSB-----HHHHHHHHHHH
T ss_pred             HHHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCC-----HHHHHHHHHHC
Confidence            63210            011       224567889999999999     99999999753

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.35  E-value=1.5e-13  Score=125.48  Aligned_cols=115  Identities=14%  Similarity=0.211  Sum_probs=94.7

Q ss_pred             CCCCCChhHHHHHhhhhcc-ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhc
Q 022005          183 KGGELTHDETTIIAGALEL-TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLL  261 (304)
Q Consensus       183 ~~g~l~~~e~~~i~~~l~l-~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll  261 (304)
                      +.|.++++|+++++++++| .+.+++|+|+|+.++++++.++|+. ++++.+.+++++++||++++.++++|+++.+|++
T Consensus         8 ~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~-~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~   86 (323)
T 3t4n_C            8 SQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVK-KSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFI   86 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHH-HHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHH
Confidence            4477889999999999998 9999999999999999999999999 9999999999999999997767999999999987


Q ss_pred             ccCC-----cc---------ccCcc------cccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          262 TIHP-----ED---------EVPVK------SVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       262 ~~~~-----~~---------~~~v~------~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ....     ..         ...++      ++|.+++.+++++++     +.++++.|.++
T Consensus        87 ~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~-----l~~a~~~m~~~  143 (323)
T 3t4n_C           87 NVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRP-----LFEACLKMLES  143 (323)
T ss_dssp             HHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSB-----HHHHHHHHHHH
T ss_pred             HHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCc-----HHHHHHHHHhC
Confidence            6320     00         01122      234578899999999     99999999764

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.32  E-value=1.5e-12  Score=105.15  Aligned_cols=95  Identities=17%  Similarity=0.198  Sum_probs=81.8

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC----------------
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP----------------  265 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~----------------  265 (304)
                      ...+|+|+|+|+.+++++++++++. ++++.+.+++++++||++++ ++++|+++.+|+++...                
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~   80 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVD-EALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS   80 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHH-HHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence            4578999999987899999999998 99999999999999999865 89999999999986421                


Q ss_pred             -ccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          266 -EDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       266 -~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                       ....++.++|.+++.+++++++     +.++++.|.++
T Consensus        81 ~~~~~~v~~~m~~~~~~v~~~~~-----l~~a~~~~~~~  114 (152)
T 4gqw_A           81 KTNGKLVGDLMTPAPLVVEEKTN-----LEDAAKILLET  114 (152)
T ss_dssp             ---CCBHHHHSEESCCCEESSSB-----HHHHHHHHHHS
T ss_pred             HhccccHHHhcCCCceEECCCCc-----HHHHHHHHHHC
Confidence             1235789998788899999999     99999999763

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.30  E-value=5.3e-12  Score=100.66  Aligned_cols=96  Identities=14%  Similarity=0.217  Sum_probs=82.3

Q ss_pred             hccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhc-ccCCc---cccCcccc
Q 022005          199 LELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLL-TIHPE---DEVPVKSV  274 (304)
Q Consensus       199 l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll-~~~~~---~~~~v~~~  274 (304)
                      +.+.+.+|+|+|++  ++.++++++++. ++.+.+.+++++.+||++++ |+++|+++.+|++ .....   ...++.++
T Consensus         2 ~~l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~   77 (138)
T 2yzi_A            2 VMDMKAPIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERI   77 (138)
T ss_dssp             -CCTTSBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGT
T ss_pred             cchhhhhHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHhcCCcccCCHHHH
Confidence            46788999999985  788999999998 99999999999999999854 8999999999997 33321   24689999


Q ss_pred             cccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          275 TIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       275 ~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      |.+++.+++++++     +.++++.|.++
T Consensus        78 m~~~~~~v~~~~~-----l~~~~~~m~~~  101 (138)
T 2yzi_A           78 MTRNLITANVNTP-----LGEVLRKMAEH  101 (138)
T ss_dssp             CBCSCCEEETTSB-----HHHHHHHHHHH
T ss_pred             hhCCCeEECCCCc-----HHHHHHHHHhc
Confidence            8889999999999     99999999753

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.29  E-value=1.6e-12  Score=101.39  Aligned_cols=91  Identities=10%  Similarity=0.172  Sum_probs=80.2

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceec
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYL  283 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~  283 (304)
                      ++|+|+|++  ++.++++++++. ++++.+.+++++++||++++ |+++|+++.+|+++....+..++.++|.+++.+++
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~v~~~~~~~~~~v~   76 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIM-EAAKILIKHNINHLPIVDEH-GKLVGIITSWDIAKALAQNKKTIEEIMTRNVITAH   76 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHH-HHHHHHHHHTCSCEEEECTT-SBEEEEECHHHHHHHHHTTCCBGGGTSBSSCCCEE
T ss_pred             CchHHhhCC--CCEEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHHHHHHhcccCHHHHhcCCCeEEC
Confidence            478999986  678899999998 99999999999999999864 89999999999987654445589999888999999


Q ss_pred             CCCCCchhHHHHHHHHHhhc
Q 022005          284 ISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       284 ~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++     +.++++.|.++
T Consensus        77 ~~~~-----l~~~~~~~~~~   91 (122)
T 3kpb_A           77 EDEP-----VDHVAIKMSKY   91 (122)
T ss_dssp             TTSB-----HHHHHHHHHHH
T ss_pred             CCCC-----HHHHHHHHHHh
Confidence            9999     99999999753

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.29  E-value=1.6e-12  Score=106.61  Aligned_cols=97  Identities=19%  Similarity=0.328  Sum_probs=84.0

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc---------cccC
Q 022005          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------DEVP  270 (304)
Q Consensus       200 ~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---------~~~~  270 (304)
                      .+.+.+|+|+|+|+.+++++++++++. ++++.+.+++++++||++++ ++++|+++.+|+++....         ...+
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~   87 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQIT   87 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSB
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhcccchhhhccCC
Confidence            567789999999877889999999998 99999999999999999864 799999999999864321         2468


Q ss_pred             cccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          271 VKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       271 v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +.++|.+++.+++++++     +.++++.|.++
T Consensus        88 v~~~m~~~~~~v~~~~~-----l~~a~~~m~~~  115 (159)
T 1yav_A           88 VEEVMLTDIPRLHINDP-----IMKGFGMVINN  115 (159)
T ss_dssp             HHHHSBCSCCEEETTSB-----HHHHHHHTTTC
T ss_pred             HHHhcCCCCceEcCCCC-----HHHHHHHHHhC
Confidence            89998889999999999     99999999753

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.28  E-value=9.9e-12  Score=112.36  Aligned_cols=108  Identities=18%  Similarity=0.195  Sum_probs=96.3

Q ss_pred             CCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhc-----CCceeeeeeCCCCcEEEEEEech
Q 022005          185 GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEK-----GHSRVPVYYEEPTNIIGLILVKN  259 (304)
Q Consensus       185 g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~-----~~sr~PV~~~~~~~ivGiv~~kD  259 (304)
                      +.++.+|+..+.+++...+.+|+++|++  +++++++++|+. ++++.+.++     +++++||++++ ++++|+|+.+|
T Consensus       118 ~~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~d  193 (286)
T 2oux_A          118 SLLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRD  193 (286)
T ss_dssp             HTSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHH
T ss_pred             HcCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHH-HHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHH
Confidence            3477888999999999999999999986  788999999998 999999987     89999999864 89999999999


Q ss_pred             hcccCCccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          260 LLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       260 ll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++....  ..++.++|.+++.+|+++++     +.++++.|+++
T Consensus       194 ll~~~~--~~~v~~im~~~~~~v~~~~~-----l~ea~~~m~~~  230 (286)
T 2oux_A          194 LIVNDD--DTLIADILNERVISVHVGDD-----QEDVAQTIRDY  230 (286)
T ss_dssp             HTTSCT--TSBHHHHSBSCCCCEETTSB-----HHHHHHHHHHH
T ss_pred             HHcCCC--CCcHHHHcCCCCeeecCCCC-----HHHHHHHHHHc
Confidence            987543  45899998889999999999     99999999764

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.27  E-value=2.1e-12  Score=106.68  Aligned_cols=101  Identities=8%  Similarity=0.082  Sum_probs=87.2

Q ss_pred             hhhhcccccccccccccc-ceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC-----cccc
Q 022005          196 AGALELTEKTASDAMTPI-AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----EDEV  269 (304)
Q Consensus       196 ~~~l~l~~~~V~diMtpr-~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~-----~~~~  269 (304)
                      +....+..++|+|+|+|+ .+++++++++++. ++++.+.+++++++||++++ |+++|+|+.+|+++...     ....
T Consensus        16 ~~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~   93 (165)
T 3fhm_A           16 NLYFQGMATFVKDLLDRKGRDVVTVGPDVSIG-EAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQGAASLQQ   93 (165)
T ss_dssp             CCCCSSSSCBHHHHHHHHCSCCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHGGGGGTS
T ss_pred             hhhHhhhhcCHHHHhccCCCCCeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhcCCccccC
Confidence            455678889999999985 5788999999998 99999999999999999864 89999999999987432     1246


Q ss_pred             CcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          270 PVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       270 ~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++.++|.+++.+++++++     +.++++.|.++
T Consensus        94 ~v~~~m~~~~~~v~~~~~-----l~~a~~~m~~~  122 (165)
T 3fhm_A           94 SVSVAMTKNVVRCQHNST-----TDQLMEIMTGG  122 (165)
T ss_dssp             BGGGTSBSSCCCBCTTCB-----HHHHHHHHHHH
T ss_pred             CHHHHhcCCCeEECCCCc-----HHHHHHHHHHc
Confidence            899998889999999999     99999999753

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.26  E-value=4.4e-12  Score=100.90  Aligned_cols=91  Identities=11%  Similarity=0.141  Sum_probs=79.7

Q ss_pred             ccccccccc-ceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc-cCC----ccccCcccccccc
Q 022005          205 TASDAMTPI-AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT-IHP----EDEVPVKSVTIRR  278 (304)
Q Consensus       205 ~V~diMtpr-~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~-~~~----~~~~~v~~~~~~~  278 (304)
                      +|+|+|+|+ .++.++++++++. ++++.+.+++++++||++ + |+++|+++.+|+++ ...    ....++.++|.++
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~   83 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQ   83 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCS
T ss_pred             eHHHHHhcCCCCcEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCC
Confidence            899999976 7889999999998 999999999999999997 3 89999999999985 321    1356899998889


Q ss_pred             cceecCCCCCchhHHHHHHHHHhhc
Q 022005          279 IPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       279 ~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +.+++++++     +.++++.|.++
T Consensus        84 ~~~v~~~~~-----l~~~~~~m~~~  103 (135)
T 2rc3_A           84 VAYVDLNNT-----NEDCMALITEM  103 (135)
T ss_dssp             CCCBCTTCB-----HHHHHHHHHHH
T ss_pred             CeEECCCCc-----HHHHHHHHHHh
Confidence            999999999     99999999754

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.25  E-value=3.8e-12  Score=105.94  Aligned_cols=94  Identities=19%  Similarity=0.221  Sum_probs=81.2

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC------------------
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH------------------  264 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~------------------  264 (304)
                      ..+|+|+|+|+.+++++++++++. ++++.+.+++++++||++++ ++++|+|+.+|+++..                  
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~   80 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVD-DALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS   80 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC-------------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence            468999999988899999999998 99999999999999999864 8999999999998531                  


Q ss_pred             -------------CccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          265 -------------PEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       265 -------------~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                                   .....+++++|.+++.+++++++     +.++++.|.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~-----l~~a~~~m~~~  127 (180)
T 3sl7_A           81 TWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTN-----LEDAARLLLET  127 (180)
T ss_dssp             CCCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSB-----HHHHHHHHTTS
T ss_pred             hhhhhHHHHHHHhccccccHHHHhCCCceEeCCCCc-----HHHHHHHHHHc
Confidence                         11245789998888899999999     99999999763

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.25  E-value=7.8e-12  Score=99.05  Aligned_cols=93  Identities=15%  Similarity=0.215  Sum_probs=80.6

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC---ccccCccccccc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIR  277 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~---~~~~~v~~~~~~  277 (304)
                      +++.+|+|+|+|  ++.++++++++. ++++.+.+++++++||++ + |+++|+++.+|+++...   ....++.++|.+
T Consensus         1 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (133)
T 2ef7_A            1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (133)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CCcccHHHhccC--CCEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCCCcccCHHHHcCC
Confidence            467899999987  678899999998 999999999999999998 4 89999999999986432   124689999878


Q ss_pred             ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          278 RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       278 ~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++.+++++++     +.++++.|.++
T Consensus        76 ~~~~v~~~~~-----l~~~~~~~~~~   96 (133)
T 2ef7_A           76 SLITIREDSP-----ITGALALMRQF   96 (133)
T ss_dssp             CCCCEETTSB-----HHHHHHHHHHH
T ss_pred             CCEEECCCCC-----HHHHHHHHHHc
Confidence            9999999999     99999999763

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.25  E-value=6.8e-12  Score=99.01  Aligned_cols=92  Identities=13%  Similarity=0.132  Sum_probs=80.4

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccc---cCcccccccc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDE---VPVKSVTIRR  278 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~---~~v~~~~~~~  278 (304)
                      .+.+|+|+|++  ++.++++++++. ++++.+.+++++++||+++  |+++|+++.+|+++...++.   .++.++|.++
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~   77 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTA-DAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLET   77 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCBC
T ss_pred             cceEHHHhhcC--CcceECCCCCHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCcccCcHHHHccCC
Confidence            46799999986  577899999998 9999999999999999985  89999999999988654322   5699998889


Q ss_pred             cceecCCCCCchhHHHHHHHHHhhc
Q 022005          279 IPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       279 ~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +.+++++++     +.++++.|.++
T Consensus        78 ~~~v~~~~~-----l~~~~~~~~~~   97 (128)
T 3gby_A           78 VRSYRPGEQ-----LFDNLISVAAA   97 (128)
T ss_dssp             CCCBCTTSB-----GGGSHHHHHHC
T ss_pred             CcEECCCCC-----HHHHHHHHHhC
Confidence            999999999     99999999764

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.22  E-value=1.5e-11  Score=98.51  Aligned_cols=90  Identities=7%  Similarity=0.082  Sum_probs=78.4

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCC--cEEEEEEechhcccCC---ccccCcccccccc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPT--NIIGLILVKNLLTIHP---EDEVPVKSVTIRR  278 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~--~ivGiv~~kDll~~~~---~~~~~v~~~~~~~  278 (304)
                      .+|+|+|++  ++.++++++++. ++++.+.+++++++||++++ +  +++|+++.+|+++...   ....++.++|.++
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~   80 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSP   80 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCC
T ss_pred             eEHHHHhcC--CCeEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCCC
Confidence            589999986  788999999998 99999999999999999864 5  8999999999987532   1246899998889


Q ss_pred             cceecCCCCCchhHHHHHHHHHhhc
Q 022005          279 IPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       279 ~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +.+++++ +     +.++++.|.++
T Consensus        81 ~~~v~~~-~-----l~~a~~~m~~~   99 (141)
T 2rih_A           81 ITVLDTD-P-----VHVAAEKMRRH   99 (141)
T ss_dssp             CEEETTS-B-----HHHHHHHHHHH
T ss_pred             CeEEcCC-C-----HHHHHHHHHHc
Confidence            9999999 9     99999999764

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.21  E-value=4.8e-12  Score=126.39  Aligned_cols=95  Identities=14%  Similarity=0.013  Sum_probs=81.9

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHH-hcCCceeeeeeCCCCcEEEEEEechhcccCCcc-------------
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLIL-EKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED-------------  267 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~-~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~-------------  267 (304)
                      ++++|+|+|+||++++++++++|++ |+.+.+. +++|+++||+|+ +|+++|+|+.+|+++...+.             
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~-e~~~~~~~~~~~~~~PVvd~-~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~  528 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQ-HIKGILEKFPNRLVFPVIDA-NGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRT  528 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHH-HHHHHHHHSTTCCEECBBCT-TCBBCCEESHHHHTTTTTTC-------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHH-HHHHHHHhcCCcceEEEEec-CCeEEEEEEHHHHHHHHHHHhhhcccccccccc
Confidence            6789999999999999999999998 9999999 799999999986 48999999999998753211             


Q ss_pred             --------------------------------------ccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          268 --------------------------------------EVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       268 --------------------------------------~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                                                            ..+++++|.+++.+|+++++     +.++++.|+++
T Consensus       529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~-----l~ea~~~M~~~  597 (632)
T 3org_A          529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSL-----VRQLHFLFVML  597 (632)
T ss_dssp             ------------------------------------------CCSCCCCCCEEETTCB-----HHHHHHHHHHT
T ss_pred             eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCc-----HHHHHHHHHhc
Confidence                                                  00277889999999999999     99999999875

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.21  E-value=1.4e-11  Score=98.00  Aligned_cols=94  Identities=16%  Similarity=0.270  Sum_probs=81.2

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechh-cccCCc---cccCcccccc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNL-LTIHPE---DEVPVKSVTI  276 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDl-l~~~~~---~~~~v~~~~~  276 (304)
                      +.+.+|+|+|++  ++.++++++++. ++.+.+.+++++++||++++ ++++|+++.+|+ ++....   ...++.++|.
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~   80 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVV-EAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDKYTLETTIGDVMT   80 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHH-HHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSC
T ss_pred             cccCCHHHhhcC--CceEECCCCcHH-HHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhcccCCcCHHHHhC
Confidence            567899999986  677899999998 99999999999999999864 899999999999 764322   2457899988


Q ss_pred             cccceecCCCCCchhHHHHHHHHHhhc
Q 022005          277 RRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       277 ~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++.+++++++     +.++++.|.++
T Consensus        81 ~~~~~v~~~~~-----l~~~~~~~~~~  102 (138)
T 2p9m_A           81 KDVITIHEDAS-----ILEAIKKMDIS  102 (138)
T ss_dssp             SSCCCEETTSB-----HHHHHHHHTCC
T ss_pred             CCcEEECCCCC-----HHHHHHHHHhc
Confidence            88999999999     99999999753

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.20  E-value=2.1e-11  Score=100.04  Aligned_cols=93  Identities=15%  Similarity=0.144  Sum_probs=79.6

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC----CccccCcccccc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----PEDEVPVKSVTI  276 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~----~~~~~~v~~~~~  276 (304)
                      +.+++|+|+|++   .+++++++++. ++++.+.+++++++||++++ |+++|+|+.+|+++..    .....++.++|.
T Consensus        14 l~~~~v~~im~~---~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~   88 (159)
T 3fv6_A           14 LKKLQVKDFQSI---PVVIHENVSVY-DAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQQELTSVPVHIIMT   88 (159)
T ss_dssp             HTTCBGGGSCBC---CCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSE
T ss_pred             HhhCCHHHHcCC---CEEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhccCcccCcCHHHHHc
Confidence            467899999985   34899999998 99999999999999999864 8999999999998743    123468999987


Q ss_pred             c--ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          277 R--RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       277 ~--~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +  ++.+++++++     +.++++.|.++
T Consensus        89 ~~~~~~~v~~~~~-----l~~a~~~m~~~  112 (159)
T 3fv6_A           89 RMPNITVCRREDY-----VMDIAKHLIEK  112 (159)
T ss_dssp             ETTSCCCBCTTSB-----HHHHHHHHHHH
T ss_pred             CCCCcEEECCCCC-----HHHHHHHHHHc
Confidence            7  8899999999     99999999753

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.19  E-value=3.3e-11  Score=101.32  Aligned_cols=91  Identities=16%  Similarity=0.235  Sum_probs=79.7

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC-----ccccCcccccccc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP-----EDEVPVKSVTIRR  278 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~-----~~~~~v~~~~~~~  278 (304)
                      .+|+|+|++  +++++++++++. ++++.+.+++++++||++++ |+++|+++.+|+++...     ....++.++|.++
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~-ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~   84 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP   84 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSS
T ss_pred             cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCC
Confidence            689999985  788999999998 99999999999999999865 89999999999987532     2346899998788


Q ss_pred             cceecCCCCCchhHHHHHHHHHhhc
Q 022005          279 IPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       279 ~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +.+++++++     +.++++.|.++
T Consensus        85 ~~~v~~~~~-----l~~a~~~m~~~  104 (184)
T 1pvm_A           85 IPKVKSDYD-----VKDVAAYLSEN  104 (184)
T ss_dssp             CCEEETTCB-----HHHHHHHHHHH
T ss_pred             CcEECCCCC-----HHHHHHHHHHc
Confidence            999999999     99999999763

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.18  E-value=1.2e-11  Score=109.93  Aligned_cols=124  Identities=13%  Similarity=0.178  Sum_probs=95.0

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeee
Q 022005          164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPV  243 (304)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV  243 (304)
                      .+|.+|+...+..    ..+.+.++..   ...+.+...+.+|+|+|++  +++++++++++. ++++.+.+++++++||
T Consensus        51 ivt~~di~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~V  120 (280)
T 3kh5_A           51 IITSMDIVDFMGG----GSKYNLIREK---HERNFLAAINEPVREIMEE--NVITLKENADID-EAIETFLTKNVGGAPI  120 (280)
T ss_dssp             EEEHHHHHHHTTT----SGGGHHHHTT---STTCHHHHTTSBGGGTSBC--SCCCEETTCBHH-HHHHHHHHTTCSEEEE
T ss_pred             EEEHHHHHHHhcc----cchhhhhhhc---cccchhHHhhhhHHHhcCC--CCEEECCCCCHH-HHHHHHHhCCCCEEEE
Confidence            4688898887642    1111111111   1233444457899999996  788999999998 9999999999999999


Q ss_pred             eeCCCCcEEEEEEechhcccCCc---cccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          244 YYEEPTNIIGLILVKNLLTIHPE---DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       244 ~~~~~~~ivGiv~~kDll~~~~~---~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++ |+++|+++.+|+++...+   ...++.++|.+++.+++++++     +.++++.|+++
T Consensus       121 vd~~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~-----l~~~~~~~~~~  177 (280)
T 3kh5_A          121 VNDE-NQLISLITERDVIRALLDKIDENEVIDDYITRDVIVATPGER-----LKDVARTMVRN  177 (280)
T ss_dssp             ECTT-CBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBCSCCCBCTTCB-----HHHHHHHHHHH
T ss_pred             EcCC-CEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCCCCeEECCCCc-----HHHHHHHHHHc
Confidence            9865 899999999999875322   234789998889999999999     99999999764

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.16  E-value=2.3e-11  Score=99.97  Aligned_cols=93  Identities=17%  Similarity=0.219  Sum_probs=79.7

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC------------cccc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP------------EDEV  269 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~------------~~~~  269 (304)
                      ...+|+|+|++  +++++++++|+. ++++.+.+++++++||++++ ++++|+|+.+|+++...            ....
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~   78 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFET   78 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCC
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHhhcccccccchhccc
Confidence            45789999986  678899999998 99999999999999999864 89999999999986421            1245


Q ss_pred             CcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          270 PVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       270 ~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++.++|.+++.+++++++     +.++++.|.++
T Consensus        79 ~v~~im~~~~~~v~~~~~-----l~~a~~~m~~~  107 (160)
T 2o16_A           79 PLFEVMHTDVTSVAPQAG-----LKESAIYMQKH  107 (160)
T ss_dssp             BHHHHSCSCEEEBCTTSB-----HHHHHHHHHHT
T ss_pred             CHHHHhcCCCeEECCCCC-----HHHHHHHHHHh
Confidence            789998888999999999     99999999753

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.16  E-value=2e-11  Score=95.40  Aligned_cols=90  Identities=20%  Similarity=0.219  Sum_probs=77.6

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----cccCccccccccc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRI  279 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~~~~  279 (304)
                      ++|+|+|++  ++.++++++++. ++++.+.+++++++||++ + |+++|+++.+|+++...+    ...++.++|.+++
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~   75 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDL   75 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGG
T ss_pred             CCHHHhcCC--CceEECCCCcHH-HHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCC
Confidence            378999986  778899999998 999999999999999998 4 899999999999864321    2467899987899


Q ss_pred             ceecCCCCCchhHHHHHHHHHhhc
Q 022005          280 PRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       280 ~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .+++++++     +.++++.|.++
T Consensus        76 ~~v~~~~~-----l~~~~~~~~~~   94 (125)
T 1pbj_A           76 VTISPRAT-----IKEAAEKMVKN   94 (125)
T ss_dssp             GEECTTSC-----HHHHHHHHHHH
T ss_pred             eEECCCCC-----HHHHHHHHHhc
Confidence            99999999     99999999753

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.16  E-value=2.6e-11  Score=98.98  Aligned_cols=92  Identities=13%  Similarity=0.170  Sum_probs=79.9

Q ss_pred             cccccccccc----ceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc-----cccCcccc
Q 022005          204 KTASDAMTPI----AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----DEVPVKSV  274 (304)
Q Consensus       204 ~~V~diMtpr----~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~~~  274 (304)
                      .+|+|+|+|+    .++.++++++++. ++++.+.+++++++||.+  .|+++|+++.+|+++....     ...++.++
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~   83 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVY-DAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQERSSKATRVEEI   83 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHH-HHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHH
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHH-HHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccCCccccCHHHH
Confidence            4799999987    6788999999998 999999999999999954  4899999999999875321     24689999


Q ss_pred             cccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          275 TIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       275 ~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      |.+++.+++++++     +.++++.|.++
T Consensus        84 m~~~~~~v~~~~~-----l~~~~~~m~~~  107 (157)
T 4fry_A           84 MTAKVRYVEPSQS-----TDECMALMTEH  107 (157)
T ss_dssp             SBSSCCCBCTTSB-----HHHHHHHHHHH
T ss_pred             cCCCCcEECCCCc-----HHHHHHHHHHc
Confidence            8888999999999     99999999763

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.16  E-value=2.2e-11  Score=101.83  Aligned_cols=96  Identities=15%  Similarity=0.208  Sum_probs=80.6

Q ss_pred             ccccccccccccce--EEEE--eCCCCccHHHHHHHHhcCCceeeeee-CCCCcEEEEEEechhcccCC-----------
Q 022005          202 TEKTASDAMTPIAE--TFAI--DINAKLDKELMNLILEKGHSRVPVYY-EEPTNIIGLILVKNLLTIHP-----------  265 (304)
Q Consensus       202 ~~~~V~diMtpr~~--v~~l--~~~~t~~~e~~~~~~~~~~sr~PV~~-~~~~~ivGiv~~kDll~~~~-----------  265 (304)
                      .+.+|+|+|+|..+  ++++  ++++++. ++++.+.+++++++||++ ++.|+++|+|+.+|+++...           
T Consensus         9 ~~~~v~dim~~~~~~~~~~v~~~~~~~~~-~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~   87 (185)
T 2j9l_A            9 HKTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVS   87 (185)
T ss_dssp             CCCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCT
T ss_pred             ccCcHHHHhcccccCceEEEecCCCccHH-HHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccc
Confidence            56799999998643  6778  9999998 999999999999999993 23589999999999976421           


Q ss_pred             -----------------ccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          266 -----------------EDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       266 -----------------~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                                       ....++.++|.+++.+++++++     +.++++.|.++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~-----l~~a~~~m~~~  137 (185)
T 2j9l_A           88 TSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTP-----MEIVVDIFRKL  137 (185)
T ss_dssp             TCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSB-----HHHHHHHHHHH
T ss_pred             cceeecccCCcccccccccCccHHHhhCcCCeEeCCCCC-----HHHHHHHHHhC
Confidence                             1245789998789999999999     99999999753

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.15  E-value=1.9e-11  Score=96.75  Aligned_cols=93  Identities=12%  Similarity=0.167  Sum_probs=78.5

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhc-ccCCc----cccCcccccc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLL-TIHPE----DEVPVKSVTI  276 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll-~~~~~----~~~~v~~~~~  276 (304)
                      .-.+|+|+|++  ++.++++++++. ++++.+.+++++++||++++ ++++|+++.+|++ +....    ...++.++|.
T Consensus         6 ~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~   81 (133)
T 1y5h_A            6 TMTTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELAR   81 (133)
T ss_dssp             --CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHT
T ss_pred             hhcCHHHHhcC--CceEeCCCCCHH-HHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHHHHHhcCCCccccCHHHHhc
Confidence            44689999986  677899999998 99999999999999999764 8999999999998 33321    2467899987


Q ss_pred             cccceecCCCCCchhHHHHHHHHHhhc
Q 022005          277 RRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       277 ~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++.+++++++     +.++++.|.++
T Consensus        82 ~~~~~v~~~~~-----l~~~~~~m~~~  103 (133)
T 1y5h_A           82 DSIYYVDANAS-----IQEMLNVMEEH  103 (133)
T ss_dssp             TCCCCEETTCC-----HHHHHHHHHHH
T ss_pred             CCCEEECCCCC-----HHHHHHHHHHc
Confidence            89999999999     99999999754

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.12  E-value=2.8e-11  Score=99.07  Aligned_cols=100  Identities=11%  Similarity=0.191  Sum_probs=79.7

Q ss_pred             hhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeC-CCCcEEEEEEechhcccCCc--------
Q 022005          196 AGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYE-EPTNIIGLILVKNLLTIHPE--------  266 (304)
Q Consensus       196 ~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~-~~~~ivGiv~~kDll~~~~~--------  266 (304)
                      .+.+.+.+.+|+|+|++  +++++++++++. ++++.+.+++++++||+++ +.|+++|+++.+|+++....        
T Consensus         5 ~~~~~~~~~~v~dim~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~   81 (164)
T 2pfi_A            5 GRNIGSHHVRVEHFMNH--SITTLAKDTPLE-EVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPG   81 (164)
T ss_dssp             -----CCSCBHHHHCBC--CCCCEETTCBHH-HHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------C
T ss_pred             cccccccCCCHHHHcCC--CCeEECCCCcHH-HHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCc
Confidence            44556788999999987  778899999998 9999999999999999986 24899999999999864311        


Q ss_pred             cccCcccccccc------cceecCCCCCchhHHHHHHHHHhhc
Q 022005          267 DEVPVKSVTIRR------IPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       267 ~~~~v~~~~~~~------~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ...++.++|.++      +.+++++++     +.++++.|.++
T Consensus        82 ~~~~v~~~m~~~~~~~~~~~~v~~~~~-----l~~~~~~m~~~  119 (164)
T 2pfi_A           82 HQQCLQDILARGCPTEPVTLTLFSETT-----LHQAQNLFKLL  119 (164)
T ss_dssp             CCCBHHHHHHTTCCCBCCCCCEETTCB-----HHHHHHHHHHT
T ss_pred             ccchhhhhhcccccccCCceEECCCCc-----HHHHHHHHHHh
Confidence            124677886555      688999999     99999999764

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.12  E-value=3.7e-11  Score=108.14  Aligned_cols=120  Identities=15%  Similarity=0.230  Sum_probs=94.9

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeee
Q 022005          164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPV  243 (304)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV  243 (304)
                      .+|.+||...+..    ..+   .    .+...+.+...+.+|+++|++  +++++++++++. ++++.+.+++++++||
T Consensus        64 ivT~~Di~~~~~~----~~~---~----~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpV  129 (296)
T 3ddj_A           64 LLTTRDLLSTVES----YCK---D----SCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPV  129 (296)
T ss_dssp             EEEHHHHHGGGTT----CC----------CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEE
T ss_pred             EEeHHHHHHHhcc----ccc---c----cccchhhHHHhcccHHHhccC--CCEEEcCCCCHH-HHHHHHHHcCCCEEEE
Confidence            4677777766531    100   0    233455556678899999997  677999999998 9999999999999999


Q ss_pred             eeCCCCcEEEEEEechhcccCCc--cccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          244 YYEEPTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       244 ~~~~~~~ivGiv~~kDll~~~~~--~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++ |+++|+++.+|+++....  ...++.++|.+++.+++++++     +.++++.|+++
T Consensus       130 vd~~-~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~~~~~v~~~~~-----l~~~~~~m~~~  185 (296)
T 3ddj_A          130 VDIN-DKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEVR-----LDQAVKLMLRR  185 (296)
T ss_dssp             ECTT-SCEEEEEEHHHHGGGGGGSCCCCBHHHHSBCSCCCEETTSB-----HHHHHHHHHHH
T ss_pred             EcCC-CcEEEEEeHHHHHHhhhcccccccHHHhhcCCCeEECCCCC-----HHHHHHHHHHc
Confidence            9864 899999999999875432  245889998889999999999     99999999763

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.11  E-value=8.6e-11  Score=113.93  Aligned_cols=122  Identities=11%  Similarity=0.200  Sum_probs=99.7

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCC-----hhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCC
Q 022005          164 LFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH  238 (304)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~-----~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~  238 (304)
                      .+|++|+...+...    +..|.+.     ++++++++++++     ++|+|++  +++++++++++. ++++.+.++++
T Consensus        54 ~vt~~eLa~av~~~----Gg~G~i~~~~~~e~~~~~i~~v~~-----~~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~  121 (491)
T 1zfj_A           54 TVTGSKMAIAIARA----GGLGVIHKNMSITEQAEEVRKVKR-----SENGVII--DPFFLTPEHKVS-EAEELMQRYRI  121 (491)
T ss_dssp             TTCSHHHHHHHHHT----TCEEEECCSSCHHHHHHHHHHHHH-----HTTTTSS--SCCCBCSSSBHH-HHHHHHHHTTC
T ss_pred             hccHHHHHHHHHHc----CCceEEeCCCCHHHHHHHHHHHhh-----HHhcCcC--CCeEECCCCcHH-HHHHHHHHcCC
Confidence            46788999888732    2224454     677888888765     4789997  788899999998 99999999999


Q ss_pred             ceeeeeeC-CCCcEEEEEEechhcccCCccccCccccccc-ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          239 SRVPVYYE-EPTNIIGLILVKNLLTIHPEDEVPVKSVTIR-RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       239 sr~PV~~~-~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~-~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++||+++ +.++++|+|+.+|++... +.+.+++++|.+ ++.+++++++     +.++++.|+++
T Consensus       122 ~~~pVvd~~~~~~lvGivt~~Dl~~~~-~~~~~v~~im~~~~~~~v~~~~~-----l~~a~~~m~~~  182 (491)
T 1zfj_A          122 SGVPIVETLANRKLVGIITNRDMRFIS-DYNAPISEHMTSEHLVTAAVGTD-----LETAERILHEH  182 (491)
T ss_dssp             SEEEEESCTTTCBEEEEEEHHHHHHCS-CSSSBTTTSCCCSCCCCEETTCC-----HHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCEEEEEEEHHHHhhhc-cCCCcHHHHcCCCCCEEECCCCC-----HHHHHHHHHHc
Confidence            99999982 348999999999998653 345689999776 8999999999     99999999764

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.10  E-value=2.2e-11  Score=118.20  Aligned_cols=121  Identities=13%  Similarity=0.189  Sum_probs=92.2

Q ss_pred             cccHHHHHHHHHhhcccccCCCCC-----ChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCC
Q 022005          164 LFRRAELKTLVNLHGNEAGKGGEL-----THDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH  238 (304)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l-----~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~  238 (304)
                      .+|++|+...+...+    .-|.+     .++++++++++     ++++++|++  +++++++++|+. ++++.+.+++|
T Consensus        53 tVTe~~ma~a~a~~G----GiGvI~~n~s~e~qa~~V~~V-----k~~~~~m~~--d~v~v~~~~tv~-ea~~~m~~~~~  120 (496)
T 4fxs_A           53 TVTEARLAIALAQEG----GIGFIHKNMSIEQQAAQVHQV-----KIFEAGVVT--HPVTVRPEQTIA-DVMELTHYHGF  120 (496)
T ss_dssp             TTCSHHHHHHHHHHT----CEEEECSSSCHHHHHHHHHHH-----HHCCC--CB--CCCCBCSSSBHH-HHHHHHTSSCC
T ss_pred             hhhHHHHHHHHHHcC----CcceecCCCCHHHHHHHHHhc-----ccccccccc--CceEECCCCCHH-HHHHHHHHcCC
Confidence            468899988886322    22445     66788899888     467899984  888999999998 99999999999


Q ss_pred             ceeeeeeCCCCcEEEEEEechhcccCCccccCcccccc-c-ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          239 SRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTI-R-RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       239 sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~-~-~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++||++++ |+++|+|+.+|+.... +...+++++|. + ++.+++++++     +.++++.|+++
T Consensus       121 s~~PVvd~~-~~lvGiVt~rDL~~~~-~~~~~v~diM~p~~~~vtv~~~~~-----l~ea~~~m~~~  180 (496)
T 4fxs_A          121 AGFPVVTEN-NELVGIITGRDVRFVT-DLTKSVAAVMTPKERLATVKEGAT-----GAEVQEKMHKA  180 (496)
T ss_dssp             CEEEEECSS-SBEEEEEEHHHHTTCC-CTTSBGGGTSEEGGGCCEEECC---------CGGGTCC--
T ss_pred             cEEEEEccC-CEEEEEEEHHHHhhcc-cCCCcHHHHhcCCCCCEEECCCCC-----HHHHHHHHHHc
Confidence            999999865 8999999999997432 34568999965 3 6999999999     99999988764

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.09  E-value=1e-10  Score=95.63  Aligned_cols=93  Identities=17%  Similarity=0.254  Sum_probs=79.1

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCce-eeeeeCCCCcEEEEEEechhcccC--------------
Q 022005          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR-VPVYYEEPTNIIGLILVKNLLTIH--------------  264 (304)
Q Consensus       200 ~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr-~PV~~~~~~~ivGiv~~kDll~~~--------------  264 (304)
                      ...+.+|+|+|++  ++.++++++|+. ++++.+.++++++ +||++++  +++|+|+.+|+++..              
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~   86 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELI   86 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred             hhccccHhhcccC--CCceECCCCCHH-HHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHH
Confidence            3466789999986  788999999998 9999999999999 9999864  999999999998641              


Q ss_pred             -----CccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          265 -----PEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       265 -----~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                           .....++.++|.+ +.+++++++     +.++++.|.++
T Consensus        87 ~~~~~~~~~~~v~~im~~-~~~v~~~~~-----l~~a~~~m~~~  124 (157)
T 1o50_A           87 RSSMKRLIAKNASEIMLD-PVYVHMDTP-----LEEALKLMIDN  124 (157)
T ss_dssp             --CCCCCSSCBHHHHCBC-CCCBCTTSB-----HHHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHcCC-CeEECCCCC-----HHHHHHHHHHC
Confidence                 1234578899766 889999999     99999999753

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.07  E-value=1.2e-10  Score=113.79  Aligned_cols=95  Identities=16%  Similarity=0.163  Sum_probs=82.4

Q ss_pred             cccccccccccccceEEEEeCC-CCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC----CccccCccccc
Q 022005          201 LTEKTASDAMTPIAETFAIDIN-AKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH----PEDEVPVKSVT  275 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~-~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~----~~~~~~v~~~~  275 (304)
                      +.+.+|+|+|++  ++++++++ +|+. ++++.|.+++++++||++++.++++|+|+.+|+++..    .....++.++|
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~-ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im  457 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVG-EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKAL  457 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHH-HHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGE
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHH-HHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHh
Confidence            567899999985  78899999 9998 9999999999999999983348999999999998643    12346899998


Q ss_pred             ccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          276 IRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       276 ~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .+++.+++++++     +.++++.|.++
T Consensus       458 ~~~~~~v~~~~~-----l~~a~~~m~~~  480 (527)
T 3pc3_A          458 NKRVIRLNESEI-----LGKLARVLEVD  480 (527)
T ss_dssp             ETTCCEEETTSB-----HHHHHHHHTTC
T ss_pred             cCCCeEECCCCc-----HHHHHHHHhhC
Confidence            899999999999     99999999754

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.05  E-value=1.7e-10  Score=112.28  Aligned_cols=122  Identities=11%  Similarity=0.196  Sum_probs=94.7

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCC-----hhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCC
Q 022005          164 LFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH  238 (304)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~-----~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~  238 (304)
                      .+|++++...+...+    .-|.+.     +++.++++++.     +.+++|++  +++++++++|+. ++++.+.+++|
T Consensus        77 tvTe~~lAia~a~~G----giGvIh~~~~~~~q~~~V~~V~-----~~~~~m~~--d~v~l~~~~tv~-ea~~~m~~~~~  144 (511)
T 3usb_A           77 TVTEADMAIAMARQG----GLGIIHKNMSIEQQAEQVDKVK-----RSESGVIS--DPFFLTPEHQVY-DAEHLMGKYRI  144 (511)
T ss_dssp             TTCSHHHHHHHHHHT----CEEEECSSSCHHHHHHHHHHHH-----TSSSCSSS--SCCCBCTTSBHH-HHHHHHHHHCC
T ss_pred             hhcHHHHHHHHHhcC----CceeecccCCHHHHHHHHHHhh-----cccccccc--CCEEECCCCCHH-HHHHHHHHcCC
Confidence            467889877775322    123343     34455666665     45677764  788999999998 99999999999


Q ss_pred             ceeeeeeCC-CCcEEEEEEechhcccCCccccCccccccc-ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          239 SRVPVYYEE-PTNIIGLILVKNLLTIHPEDEVPVKSVTIR-RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       239 sr~PV~~~~-~~~ivGiv~~kDll~~~~~~~~~v~~~~~~-~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++||++++ .|+++|+|+.+|+... .....+++++|.+ ++.+++++++     +.++++.|+++
T Consensus       145 s~~pVvd~g~~~~lvGiVt~rDl~~~-~~~~~~V~~vM~~~~~vtv~~~~~-----l~eal~~m~~~  205 (511)
T 3usb_A          145 SGVPVVNNLDERKLVGIITNRDMRFI-QDYSIKISDVMTKEQLITAPVGTT-----LSEAEKILQKY  205 (511)
T ss_dssp             SEEEEESCTTTCBEEEEEEHHHHTTC-CCSSSBHHHHCCCCCCCCEETTCC-----HHHHHHHHHHH
T ss_pred             cEEEEEecCCCCEEEEEEEehHhhhh-ccCCCcHHHhcccCCCEEECCCCC-----HHHHHHHHHHc
Confidence            999999861 3899999999999763 3345689999876 8999999999     99999999864

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.04  E-value=1.1e-10  Score=93.27  Aligned_cols=94  Identities=11%  Similarity=0.124  Sum_probs=76.8

Q ss_pred             cccccccc---cccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc-----cccCcc
Q 022005          201 LTEKTASD---AMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----DEVPVK  272 (304)
Q Consensus       201 l~~~~V~d---iMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~  272 (304)
                      +-+.+++|   +|+  .+++++++++++. ++++.+.+++++++||++++ ++++|+++.+|+++....     ...++.
T Consensus         5 ~~~~~v~~~~~~~~--~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~   80 (144)
T 2nyc_A            5 FLKIPIGDLNIITQ--DNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVG   80 (144)
T ss_dssp             GGGSBGGGSSCCBC--SSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHH
T ss_pred             hhhcchhhcCCCCC--CCceEECCCCcHH-HHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhcccccccCCccHH
Confidence            44567888   776  4788999999998 99999999999999999865 899999999999874321     245788


Q ss_pred             ccccc------ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          273 SVTIR------RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       273 ~~~~~------~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++|.+      ++.+++++++     +.++++.|.++
T Consensus        81 ~~m~~~~~~~~~~~~v~~~~~-----l~~~~~~m~~~  112 (144)
T 2nyc_A           81 EALMRRSDDFEGVYTCTKNDK-----LSTIMDNIRKA  112 (144)
T ss_dssp             HHHHHCC------CEECTTSB-----HHHHHHHHHHH
T ss_pred             HHHhcCccccCCCeEECCCCc-----HHHHHHHHHHC
Confidence            88765      6889999999     99999999753

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.02  E-value=8.2e-10  Score=95.26  Aligned_cols=89  Identities=13%  Similarity=0.057  Sum_probs=78.9

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceec
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYL  283 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~  283 (304)
                      .+++++|++  +++++++++|+. ++++.+.+++++++||++++ ++++|+++.+|+.+...  ..+++++|.+++.+++
T Consensus        13 ~~~~~~~~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~~--~~~v~~im~~~~~~v~   86 (213)
T 1vr9_A           13 MKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL--DSSVFNKVSLPDFFVH   86 (213)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT--TSBSGGGCBCTTCCEE
T ss_pred             cCHHHhhcC--CCeEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhcC--CCcHHHHccCCCEEEC
Confidence            468999975  788999999998 99999999999999999864 89999999999987654  4579999888999999


Q ss_pred             CCCCCchhHHHHHHHHHhhc
Q 022005          284 ISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       284 ~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++     +.++++.|.++
T Consensus        87 ~~~~-----l~~a~~~m~~~  101 (213)
T 1vr9_A           87 EEDN-----ITHALLLFLEH  101 (213)
T ss_dssp             TTSB-----HHHHHHHHHHC
T ss_pred             CCCc-----HHHHHHHHHHh
Confidence            9999     99999999764

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.00  E-value=4.4e-10  Score=99.71  Aligned_cols=92  Identities=11%  Similarity=0.187  Sum_probs=76.4

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc-----------------
Q 022005          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED-----------------  267 (304)
Q Consensus       205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~-----------------  267 (304)
                      ++++.|.+ .+++++++++|+. ++++.|.+++++++||++++.|+++|+++.+|+++.....                 
T Consensus         4 ~v~~~i~~-~~~~~v~~~~sl~-~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~   81 (280)
T 3kh5_A            4 RVMKIAQN-KKIVTVYPTTTIR-KALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAA   81 (280)
T ss_dssp             BGGGTSCC-SCCCCBCTTSBHH-HHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHH
T ss_pred             hHHHHhcC-CCcEEECCCCcHH-HHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHH
Confidence            45554433 2789999999998 9999999999999999986458999999999998654211                 


Q ss_pred             -ccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          268 -EVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       268 -~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                       ..+++++|.+++.+++++++     +.++++.|+++
T Consensus        82 ~~~~v~~im~~~~~~v~~~~~-----~~~a~~~~~~~  113 (280)
T 3kh5_A           82 INEPVREIMEENVITLKENAD-----IDEAIETFLTK  113 (280)
T ss_dssp             TTSBGGGTSBCSCCCEETTCB-----HHHHHHHHHHT
T ss_pred             hhhhHHHhcCCCCEEECCCCC-----HHHHHHHHHhC
Confidence             34789998889999999999     99999999764

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.97  E-value=4.3e-10  Score=100.10  Aligned_cols=89  Identities=19%  Similarity=0.216  Sum_probs=59.8

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceec
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYL  283 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~  283 (304)
                      ++|+|+|++  +++++++++|+. ++++.+.+++++++||+++ .|+++|+++.+|++....  ..+++++|.+++.+++
T Consensus         1 m~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pV~d~-~~~~~Giv~~~dl~~~~~--~~~v~~~m~~~~~~v~   74 (282)
T 2yzq_A            1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPD--EEQLAMLVKRDVPVVK   74 (282)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECT-TCCEEEEEESSCC------------CCCBSCCCEEE
T ss_pred             CchHHhccC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhhhc--cCCHHHHcCCCCcEEC
Confidence            368999985  788899999999 9999999999999999986 489999999999987653  4578999777789999


Q ss_pred             CCCCCchhHHHHHHHHHhhc
Q 022005          284 ISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       284 ~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++     +.++++.|.++
T Consensus        75 ~~~~-----l~~a~~~m~~~   89 (282)
T 2yzq_A           75 ENDT-----LKKAAKLMLEY   89 (282)
T ss_dssp             TTSB-----HHHHHHHHHHH
T ss_pred             CCCc-----HHHHHHHHHHc
Confidence            9999     99999999753

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.95  E-value=1.2e-10  Score=112.82  Aligned_cols=118  Identities=14%  Similarity=0.226  Sum_probs=22.8

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCC-----hhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCC
Q 022005          164 LFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH  238 (304)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~-----~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~  238 (304)
                      ..+++|+...+...    +..|.+.     +++++++++++++     +|+|++  +++++++++++. ++++.+.++++
T Consensus        57 ~vt~~ela~ava~~----GglG~i~~~~~~e~~~~~I~~v~~~-----~~~m~~--~~~~v~~~~tv~-ea~~~~~~~~~  124 (486)
T 2cu0_A           57 TVTEWEMAVAMARE----GGLGVIHRNMGIEEQVEQVKRVKRA-----ERLIVE--DVITIAPDETVD-FALFLMEKHGI  124 (486)
T ss_dssp             TTCSHHHHHHHHHT----TCEEEECSSSCHHHHHHHHHHHHTC-----C-------------------------------
T ss_pred             eecHHHHHHHHHhc----CCceeecCCCCHHHHHHHHHhhcch-----hhcccc--CceEECCCCCHH-HHHHHHHHcCC
Confidence            45778888887632    1123343     5778899998866     457874  889999999999 99999999999


Q ss_pred             ceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          239 SRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       239 sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++||+++  ++++|+|+.+|++.   +...+++++|.+++.+++++++     +.++++.|+++
T Consensus       125 ~~~pVvd~--~~lvGivt~~Dl~~---~~~~~v~~im~~~~~~v~~~~~-----l~eal~~m~~~  179 (486)
T 2cu0_A          125 DGLPVVED--EKVVGIITKKDIAA---REGKLVKELMTKEVITVPESIE-----VEEALKIMIEN  179 (486)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             cEEEEEEC--CEEEEEEEHHHhcc---CCCCCHHHHccCCCeEECCcCc-----HHHHHHHHHHc
Confidence            99999985  89999999999986   3456899998778999999999     99999999764

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.95  E-value=1.2e-10  Score=113.21  Aligned_cols=122  Identities=8%  Similarity=0.085  Sum_probs=19.9

Q ss_pred             cccHHHHHHHHHhhcccccCCCCC-----ChhHHHHHhhhhcccccccccc-ccccceEEEEeCCCCccHHHHHHHHhcC
Q 022005          164 LFRRAELKTLVNLHGNEAGKGGEL-----THDETTIIAGALELTEKTASDA-MTPIAETFAIDINAKLDKELMNLILEKG  237 (304)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l-----~~~e~~~i~~~l~l~~~~V~di-Mtpr~~v~~l~~~~t~~~e~~~~~~~~~  237 (304)
                      .++++++...+...+    ..|.+     .+++++++.++.      ..|+ |+|  +++++++++|+. ++++.+.+++
T Consensus        61 ~vt~~~la~~la~~g----g~G~I~~~~~~e~~~~~v~~V~------~~e~gM~~--~~~~v~~~~tv~-eal~~m~~~~  127 (503)
T 1me8_A           61 SVSGEKMAIALAREG----GISFIFGSQSIESQAAMVHAVK------NFKAGFVV--SDSNVKPDQTFA-DVLAISQRTT  127 (503)
T ss_dssp             TTCSHHHHHHHHHTT----CEEEECCSSCHHHHHHHHHHHH------TTTC-----------------------------
T ss_pred             hhhHHHHHHHHHhCC----CcceeeCCCCHHHHHHHHhhhh------hcccCccc--CCeEECCCCcHH-HHHHHHHHcC
Confidence            457888887776321    11222     246677776654      3456 987  888999999999 9999999999


Q ss_pred             CceeeeeeCC--CCcEEEEEEechhcccCCccccCcccccccc--cceecCCCCCchhHHHHHHHHHhhc
Q 022005          238 HSRVPVYYEE--PTNIIGLILVKNLLTIHPEDEVPVKSVTIRR--IPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       238 ~sr~PV~~~~--~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~--~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++||++++  .|+++|+|+.+|++........+++++|.++  +.+++++++     +.++++.|+++
T Consensus       128 ~s~~pVvd~~~~~g~lvGiVt~~Dl~~~~~~~~~~V~diM~~~~~~~tv~~~~s-----l~ea~~~m~~~  192 (503)
T 1me8_A          128 HNTVAVTDDGTPHGVLLGLVTQRDYPIDLTQTETKVSDMMTPFSKLVTAHQDTK-----LSEANKIIWEK  192 (503)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             ceEEEEEECCCcCCeEEEEEEHHHHHhhhccccCcHHHHhCCCCCCEEEcCCCc-----HHHHHHHHHHc
Confidence            9999999864  3799999999999863223356899997666  999999999     99999999764

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.91  E-value=1.6e-09  Score=77.02  Aligned_cols=65  Identities=12%  Similarity=0.279  Sum_probs=54.5

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC-Cc----cccCccccccccccee
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-PE----DEVPVKSVTIRRIPRY  282 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~-~~----~~~~v~~~~~~~~~~v  282 (304)
                      +++++++++|+. ++.+.|.+++++.+||.++  |+++|+++.+|+++.. ..    .+.+++++|.+++.+|
T Consensus         1 k~vtv~p~~tv~-ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            1 KAIVVQPKDTVD-RVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             CEEEECTTCBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            467899999999 9999999999999999974  7999999999997532 21    2458999998888764

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.89  E-value=9.8e-10  Score=96.42  Aligned_cols=57  Identities=14%  Similarity=0.252  Sum_probs=51.2

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      ..+|+|+|++  ++.++++++++. ++++.|.+++++++||+|++ |+++|+++.+|+++.
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~   62 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLK-MAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITAT   62 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHH
Confidence            4589999985  678999999998 99999999999999999864 899999999999753

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.88  E-value=2.4e-10  Score=110.72  Aligned_cols=120  Identities=15%  Similarity=0.200  Sum_probs=23.5

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCC-----hhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCC
Q 022005          164 LFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH  238 (304)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~-----~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~  238 (304)
                      .+|++++...+...+    .-|.+.     +++++++.++     ++++++|++  +++++++++|+. ++++.+.++++
T Consensus        52 tVTe~~lA~ala~~G----GiGvI~~~~~~e~~a~~v~~v-----k~~~~~m~~--~~v~v~~~~tv~-ea~~~m~~~~~  119 (490)
T 4avf_A           52 TVTEARLAIAMAQEG----GIGIIHKNMGIEQQAAEVRKV-----KKHETAIVR--DPVTVTPSTKII-ELLQMAREYGF  119 (490)
T ss_dssp             TTCSHHHHHHHHHHT----SEEEECCSSCHHHHHHHHHHH-----HHCCC------------------------------
T ss_pred             hhCHHHHHHHHHHcC----CCccccCCCCHHHHHHHhhhh-----cccccCccc--CceEeCCCCcHH-HHHHHHHHhCC
Confidence            468899998776322    124444     5667777776     457899985  788999999999 99999999999


Q ss_pred             ceeeeeeCCCCcEEEEEEechhcccCCccccCcccccc-c-ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          239 SRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTI-R-RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       239 sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~-~-~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++||++ + ++++|+|+.+|+.... ....+++++|. + ++.+++++++     +.++++.|+++
T Consensus       120 s~~pVvd-~-g~lvGIVt~rDl~~~~-~~~~~V~~vMtp~~~~vtv~~~~~-----l~ea~~~m~~~  178 (490)
T 4avf_A          120 SGFPVVE-Q-GELVGIVTGRDLRVKP-NAGDTVAAIMTPKDKLVTAREGTP-----LEEMKAKLYEN  178 (490)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             CEEEEEE-C-CEEEEEEEhHHhhhcc-ccCCcHHHHhccCCCCEEECCCCc-----HHHHHHHHHHc
Confidence            9999998 3 8999999999996432 33568999976 4 6999999999     99999999764

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.83  E-value=5.6e-09  Score=92.78  Aligned_cols=93  Identities=17%  Similarity=0.189  Sum_probs=76.1

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc-cCCc----cccCcccccc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT-IHPE----DEVPVKSVTI  276 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~-~~~~----~~~~v~~~~~  276 (304)
                      .+.+++++|++  ++.++++++++. ++++.+.+++++++||++++ |+++|+++.+|+++ ...+    ...+++++|.
T Consensus        58 ~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m~  133 (282)
T 2yzq_A           58 DEEQLAMLVKR--DVPVVKENDTLK-KAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQ  133 (282)
T ss_dssp             ------CCCBS--CCCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTSB
T ss_pred             ccCCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhccCCcccCcHHHHhC
Confidence            35789999986  577899999998 99999999999999999865 89999999999987 5542    2457899987


Q ss_pred             cccceecCCCCCchhHHHHHHHHHhhc
Q 022005          277 RRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       277 ~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++.+++++++     +.++++.|.++
T Consensus       134 ~~~~~v~~~~~-----l~~~~~~~~~~  155 (282)
T 2yzq_A          134 RYVSIVWEGTP-----LKAALKALLLS  155 (282)
T ss_dssp             SCCCCEETTSB-----HHHHHHHHHTC
T ss_pred             CCCEEECCCCC-----HHHHHHHHHHc
Confidence            88999999999     99999999753

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=98.79  E-value=5.7e-09  Score=93.70  Aligned_cols=93  Identities=16%  Similarity=0.196  Sum_probs=81.0

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc-------------
Q 022005          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-------------  266 (304)
Q Consensus       200 ~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-------------  266 (304)
                      +....+|+|+|++  +++++++++|+. ++++.|.+++++++||++   ++++|+++.+|+++....             
T Consensus        16 ~~~~~~V~dim~~--~~~~v~~~~~v~-~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~   89 (296)
T 3ddj_A           16 YFQGMNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYH   89 (296)
T ss_dssp             TTCCSSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHH
T ss_pred             hhcccCHHHhccC--CCcEECCCccHH-HHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccccccchhhHH
Confidence            4466789999986  788999999998 999999999999999997   799999999999876421             


Q ss_pred             -cccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          267 -DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       267 -~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                       ...+++++|.+++.+++++++     +.++++.|.++
T Consensus        90 ~~~~~v~~im~~~~~~v~~~~~-----~~~a~~~m~~~  122 (296)
T 3ddj_A           90 ISTTPIIDYMTPNPVTVYNTSD-----EFTAINIMVTR  122 (296)
T ss_dssp             HHTSBGGGTSEESCCCEETTSC-----HHHHHHHHHHH
T ss_pred             HhcccHHHhccCCCEEEcCCCC-----HHHHHHHHHHc
Confidence             135799998889999999999     99999999753

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=98.78  E-value=4.4e-09  Score=95.62  Aligned_cols=94  Identities=11%  Similarity=0.137  Sum_probs=79.9

Q ss_pred             ccccccccc---ccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc-----ccCcc
Q 022005          201 LTEKTASDA---MTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED-----EVPVK  272 (304)
Q Consensus       201 l~~~~V~di---Mtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~-----~~~v~  272 (304)
                      +.+.+++++   |+  .+++++++++++. ++.+.|.+++++++||++++ |+++|+++.+|+++...++     ..+++
T Consensus       184 ~~~~~v~~~~~~m~--~~~~~v~~~~~~~-~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~v~  259 (323)
T 3t4n_C          184 FLKIPIGDLNIITQ--DNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVG  259 (323)
T ss_dssp             GCCSBGGGTTCSBC--TTCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEETTHHHHHHHTTHHHHTTSBHH
T ss_pred             hhhCcHHHcCCCCC--CCcEEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHHHHHHhhchhhhccCCHH
Confidence            456789999   75  4778999999998 99999999999999999864 8999999999998754321     35788


Q ss_pred             ccccc------ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          273 SVTIR------RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       273 ~~~~~------~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++|.+      ++.+++++++     +.++++.|.++
T Consensus       260 ~~m~~~~~~~~~~~~v~~~~~-----l~~~~~~m~~~  291 (323)
T 3t4n_C          260 EALMRRSDDFEGVYTCTKNDK-----LSTIMDNIRKA  291 (323)
T ss_dssp             HHGGGSCTTCCCCEEECTTCB-----HHHHHHHHHHS
T ss_pred             HHHhhccccCCCCEEECCCCC-----HHHHHHHHHHh
Confidence            99766      6899999999     99999999764

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.75  E-value=6.2e-09  Score=92.22  Aligned_cols=60  Identities=12%  Similarity=0.163  Sum_probs=53.3

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC-CCcEEEEEEechhcc
Q 022005          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE-PTNIIGLILVKNLLT  262 (304)
Q Consensus       200 ~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~-~~~ivGiv~~kDll~  262 (304)
                      ...+++|+|+|++  +++++++++++. ++.+.|.+++++++||++++ .++++|+|+.+|+++
T Consensus         9 ~~~~~~v~diMt~--~vvtv~~~~tv~-~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~   69 (250)
T 2d4z_A            9 NKYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEG   69 (250)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             ccCCCChHHhcCC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHH
Confidence            4467899999986  789999999998 99999999999999999864 257999999999974

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.63  E-value=1.6e-08  Score=88.68  Aligned_cols=60  Identities=20%  Similarity=0.278  Sum_probs=50.1

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ...+|+|+|+| .+++++++++++. ++++.|.+++++++||+|++ |+++|+++.+|+++..
T Consensus       183 ~~~~v~~im~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          183 QSLPVDYVMTK-DNLVAVSTDDLVE-DVKVTMSETRYSNYPVIDEN-NKVVGSIARFHLISTH  242 (245)
T ss_dssp             GGSBHHHHSBC-TTCCCEETTSBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEECC------
T ss_pred             cCCceeeEecC-CccEEECCCCcHH-HHHHHHHhcCCceEEEEcCC-CeEEEEEEHHHhhchh
Confidence            45789999998 7889999999998 99999999999999999865 8999999999998754

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.58  E-value=3.9e-08  Score=89.68  Aligned_cols=93  Identities=11%  Similarity=0.167  Sum_probs=77.7

Q ss_pred             ccccccc---cccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc-----cccCccc
Q 022005          202 TEKTASD---AMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----DEVPVKS  273 (304)
Q Consensus       202 ~~~~V~d---iMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~~  273 (304)
                      .+.++++   +|++  ++.++++++++. ++.+.+.+++++++||++++ |+++|+++.+|+++...+     ...++.+
T Consensus       180 ~~~~v~~l~~~m~~--~~~~v~~~~~~~-~~~~~m~~~~~~~~~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~v~~  255 (334)
T 2qrd_G          180 LRVPLNQMTIGTWS--NLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGE  255 (334)
T ss_dssp             CCCBGGGSSCSBCS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEETHHHHHHHTTSCGGGGGSBHHH
T ss_pred             hhCcHHHhCCcccC--CceEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHHHHhhccccccccCcHHH
Confidence            4568899   4874  677899999998 99999999999999999864 899999999999875322     2357888


Q ss_pred             cccc------ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          274 VTIR------RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       274 ~~~~------~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +|.+      ++.+++++++     +.++++.|.++
T Consensus       256 ~m~~~~~~~~~~~~v~~~~~-----l~~~~~~m~~~  286 (334)
T 2qrd_G          256 ALLKRPANFDGVHTCRATDR-----LDGIFDAIKHS  286 (334)
T ss_dssp             HHTTCCTTCCCCCEECTTCB-----HHHHHHHHHHS
T ss_pred             HHhcccccCCCCEEECCCCc-----HHHHHHHHHHc
Confidence            8763      7899999999     99999999764

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.58  E-value=9.5e-09  Score=99.63  Aligned_cols=98  Identities=11%  Similarity=0.191  Sum_probs=5.6

Q ss_pred             HHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccC
Q 022005          191 ETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVP  270 (304)
Q Consensus       191 e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~  270 (304)
                      .++.+.++.     +++|+|++  +++++++++++. ++++.+.+++++++||+|++ ++++|+|+.+|++... +...+
T Consensus        87 ~~~~v~~v~-----~~~~iM~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~~-~~~~~  156 (494)
T 1vrd_A           87 QARQVSIVK-----KTENGIIY--DPITVTPDMTVK-EAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFEK-NLSKK  156 (494)
T ss_dssp             HHHHHHHHH-----TC----------------------------------------------------------------
T ss_pred             HHHHHHhhh-----hHhhcCcc--CCeEECCCCCHH-HHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhhc-CCCCc
Confidence            344555554     56889986  788999999999 99999999999999999864 7999999999998642 23568


Q ss_pred             ccccccc--ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          271 VKSVTIR--RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       271 v~~~~~~--~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +.++|.+  ++.+++++++     +.++++.|+++
T Consensus       157 v~~im~~~~~~~~v~~~~~-----l~ea~~~m~~~  186 (494)
T 1vrd_A          157 IKDLMTPREKLIVAPPDIS-----LEKAKEILHQH  186 (494)
T ss_dssp             -----------------------------------
T ss_pred             HHHHhCCCCCCeEECCCCC-----HHHHHHHHHHc
Confidence            9999876  8999999999     99999998753

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.56  E-value=9.1e-08  Score=87.17  Aligned_cols=93  Identities=12%  Similarity=0.188  Sum_probs=76.1

Q ss_pred             ccccccc--ccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc-----ccCccccc
Q 022005          203 EKTASDA--MTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED-----EVPVKSVT  275 (304)
Q Consensus       203 ~~~V~di--Mtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~-----~~~v~~~~  275 (304)
                      ..+++++  |+ ..+++++++++++. ++.+.+.+++++++||++++ |+++|+++.+|+++...++     ..++.++|
T Consensus       189 ~~~v~~~~v~~-~~~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~  265 (330)
T 2v8q_E          189 SKSLEELQIGT-YANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKAL  265 (330)
T ss_dssp             GSBHHHHTCSB-CSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHG
T ss_pred             cCCHHHhcccC-cCCceEECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEHHHHHHHHhccccccccCcHHHHH
Confidence            3456676  54 25778899999998 99999999999999999864 8999999999998765321     35677775


Q ss_pred             ------ccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          276 ------IRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       276 ------~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                            .+++.+++++++     +.++++.|.++
T Consensus       266 ~~~~~~~~~~~~v~~~~~-----l~~a~~~m~~~  294 (330)
T 2v8q_E          266 QHRSHYFEGVLKCYLHET-----LEAIINRLVEA  294 (330)
T ss_dssp             GGCCSCCCSCCEECTTSB-----HHHHHHHHHHH
T ss_pred             hccccccCCCeEECCCCc-----HHHHHHHHHHC
Confidence                  378999999999     99999999764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.51  E-value=5.7e-08  Score=80.22  Aligned_cols=61  Identities=20%  Similarity=0.272  Sum_probs=54.3

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE  266 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~  266 (304)
                      ..+.+|+++|++  +++++++++++. ++++.|.+++++++||+++  |+++|+|+.+|++++...
T Consensus       102 ~~~~~v~~im~~--~~~tv~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A          102 GRKLTASAVMTQ--PVVTAAPEDSVG-SIADQMRRHGIHRIPVVQD--GVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             HTTCBHHHHCBC--CSCCBCTTSBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHTTTSCC
T ss_pred             ccccchhhhccc--CcccCCcchhHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence            356789999986  788999999998 9999999999999999984  799999999999987543

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.48  E-value=2.4e-08  Score=85.98  Aligned_cols=92  Identities=14%  Similarity=0.187  Sum_probs=66.0

Q ss_pred             ccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccc-------cccccccccceEEEEeCCCCccHHHHHHHHhcC
Q 022005          165 FRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEK-------TASDAMTPIAETFAIDINAKLDKELMNLILEKG  237 (304)
Q Consensus       165 ~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~-------~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~  237 (304)
                      .+-+|...++..++    .++..--++...+.+++...+.       +|+|+|++  +++++++++++. ++.+.|.+++
T Consensus        30 ~tv~ea~~~m~~~~----~~~~pVvd~~~~l~Givt~~dl~~~~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~  102 (213)
T 1vr9_A           30 ATVRECLHRMRQYQ----TNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQ  102 (213)
T ss_dssp             CBHHHHHHHHHHTT----SSEEEEECTTSBEEEEEEGGGGTTSCTTSBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCC
T ss_pred             CcHHHHHHHHHHCC----CCEEEEEcCCCEEEEEEEHHHHHhhcCCCcHHHHccC--CCEEECCCCcHH-HHHHHHHHhC
Confidence            45667777665321    1121111112234455554444       69999997  677899999998 9999999999


Q ss_pred             CceeeeeeCCCCcEEEEEEechhcccC
Q 022005          238 HSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       238 ~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ++++||++++ |+++|+++.+|+++..
T Consensus       103 ~~~lpVvd~~-g~lvGiit~~Dil~~~  128 (213)
T 1vr9_A          103 EPYLPVVDEE-MRLKGAVSLHDFLEAL  128 (213)
T ss_dssp             CSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             CCEEEEEcCC-CEEEEEEEHHHHHHHH
Confidence            9999999864 8999999999998753

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.39  E-value=2.2e-07  Score=75.73  Aligned_cols=63  Identities=21%  Similarity=0.266  Sum_probs=55.9

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCC---cEEEEEEechhcccC
Q 022005          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPT---NIIGLILVKNLLTIH  264 (304)
Q Consensus       200 ~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~---~ivGiv~~kDll~~~  264 (304)
                      ...+.+++|+|+++.+++++++++++. ++++.|.+++++++||++++ |   +++|+|+.+|+++..
T Consensus        77 ~~~~~~v~~~m~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~~~vGiit~~dil~~l  142 (159)
T 3fv6_A           77 ELTSVPVHIIMTRMPNITVCRREDYVM-DIAKHLIEKQIDALPVIKDT-DKGFEVIGRVTKTNMTKIL  142 (159)
T ss_dssp             CTTTCBGGGTSEETTSCCCBCTTSBHH-HHHHHHHHHTCSEEEEEEEC-SSSEEEEEEEEHHHHHHHH
T ss_pred             cccCcCHHHHHcCCCCcEEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CcceeEEEEEEHHHHHHHH
Confidence            346779999999877888999999998 99999999999999999864 5   899999999998753

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.38  E-value=3.4e-08  Score=96.17  Aligned_cols=92  Identities=9%  Similarity=0.220  Sum_probs=47.5

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEechhcccCC-ccccCccccccc--c
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHP-EDEVPVKSVTIR--R  278 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~-~~~~~v~~~~~~--~  278 (304)
                      ++++++|++  +++++++++++. ++++.+.+++++++||+|++  .++++|+|+.+|+..... ....+++++|.+  +
T Consensus       108 ~~~~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~~~~  184 (514)
T 1jcn_A          108 KNFEQGFIT--DPVVLSPSHTVG-DVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIE  184 (514)
T ss_dssp             HTCCTTSCS--SCCCCCC------------------CEESCC--------CCEECTTTTC----------------CCBC
T ss_pred             hhhhhcccc--CCEEECCCCCHH-HHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCCCCC
Confidence            368899985  677899999999 99999999999999999863  479999999999976431 234689999877  8


Q ss_pred             cceecCCCCCchhHHHHHHHHHhhc
Q 022005          279 IPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       279 ~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +.+++++++     +.++++.|.++
T Consensus       185 ~~tv~~~~~-----l~ea~~~m~~~  204 (514)
T 1jcn_A          185 LVVAPAGVT-----LKEANEILQRS  204 (514)
T ss_dssp             CCCEETTCC-----STTTTTHHHHH
T ss_pred             CeEECCCCC-----HHHHHHHHHHc
Confidence            999999999     99998888653

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.38  E-value=2e-07  Score=75.61  Aligned_cols=59  Identities=24%  Similarity=0.332  Sum_probs=53.2

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ..+.+++|+|++  ++.++++++++. ++++.|.+++++++||++ + |+++|+|+.+|+++..
T Consensus        75 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~l  133 (157)
T 4fry_A           75 SKATRVEEIMTA--KVRYVEPSQSTD-ECMALMTEHRMRHLPVLD-G-GKLIGLISIGDLVKSV  133 (157)
T ss_dssp             SSSCBHHHHSBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHH
T ss_pred             ccccCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHH
Confidence            357899999986  677899999998 999999999999999998 4 8999999999998864

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.37  E-value=3.4e-07  Score=72.61  Aligned_cols=60  Identities=13%  Similarity=0.167  Sum_probs=52.6

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~  265 (304)
                      ..+.+++++|.|   +.++++++++. ++++.|.+++.+++||++++ |+++|+|+.+|+++...
T Consensus        67 ~~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           67 GDSDDVKKLLRP---ATFVPESKRLN-VLLREFRANHNHMAIVIDEY-GGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             GGGCCGGGTCBC---CCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHTTC-
T ss_pred             CCCcCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHHh
Confidence            356789999964   67899999998 99999999999999999864 89999999999998654

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.37  E-value=2.4e-07  Score=71.51  Aligned_cols=59  Identities=17%  Similarity=0.279  Sum_probs=52.2

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~  265 (304)
                      ..+++++|.+  ++.++++++++. ++++.+.+++++++||++++ |+++|+++.+|+++...
T Consensus        61 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           61 KKTIEEIMTR--NVITAHEDEPVD-HVAIKMSKYNISGVPVVDDY-RRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             CCBGGGTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHC
T ss_pred             ccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhCCCeEEEECCC-CCEEEEEeHHHHHHHhh
Confidence            3489999986  677899999998 99999999999999999864 89999999999987543

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.34  E-value=9.2e-08  Score=91.98  Aligned_cols=100  Identities=13%  Similarity=0.307  Sum_probs=9.0

Q ss_pred             hhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC--CCcEEEEEEechhcccCCc
Q 022005          189 HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLILVKNLLTIHPE  266 (304)
Q Consensus       189 ~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~--~~~ivGiv~~kDll~~~~~  266 (304)
                      +++.++++.+-..+     ..|+  .+++++.+++|+. |+.+++.+++||.+||+++.  .++++|||+-+|+...  +
T Consensus       128 e~Qa~~V~~VKr~e-----~g~i--~dPvtl~P~~Tv~-da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--d  197 (556)
T 4af0_A          128 EEQAAMVRRVKKYE-----NGFI--TDPLCLGPDATVG-DVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--D  197 (556)
T ss_dssp             HHHHHHHHHHHHCC-----C------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcc-----cCcc--CCCeEcCCCCCHH-HHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--c
Confidence            34567777775444     4455  3788999999999 99999999999999999853  4789999999998653  3


Q ss_pred             cccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          267 DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       267 ~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ...+++++|.+++.+++++.+     +.++.+.|+++
T Consensus       198 ~~~~V~evMT~~lvt~~~~~~-----leeA~~iL~~~  229 (556)
T 4af0_A          198 AETPIKSVMTTEVVTGSSPIT-----LEKANSLLRET  229 (556)
T ss_dssp             -------------------------------------
T ss_pred             cceEhhhhcccceEEecCCCC-----HHHHHHHHHHc
Confidence            456899999999999999999     89988888653

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.29  E-value=1.1e-06  Score=73.39  Aligned_cols=62  Identities=13%  Similarity=0.208  Sum_probs=54.9

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE  266 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~  266 (304)
                      ..+.+++++|.+  ++.++++++++. ++++.|.+++++++||++++ |+++|+|+.+|+++...+
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           72 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTSCH
T ss_pred             cccCCHHHHhCC--CCcEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHHHh
Confidence            456789999986  677899999998 99999999999999999864 899999999999986544

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.28  E-value=3.8e-07  Score=72.92  Aligned_cols=60  Identities=23%  Similarity=0.451  Sum_probs=52.4

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ..+.+++++|.+  +++++++++++. ++++.|.+++++++||++++ |+++|+|+.+|+++..
T Consensus        82 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dil~~~  141 (152)
T 4gqw_A           82 TNGKLVGDLMTP--APLVVEEKTNLE-DAAKILLETKYRRLPVVDSD-GKLVGIITRGNVVRAA  141 (152)
T ss_dssp             --CCBHHHHSEE--SCCCEESSSBHH-HHHHHHHHSSCCEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             hccccHHHhcCC--CceEECCCCcHH-HHHHHHHHCCCCEEEEECCC-CcEEEEEEHHHHHHHH
Confidence            456789999987  567899999998 99999999999999999864 8999999999998754

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.28  E-value=6.4e-07  Score=70.57  Aligned_cols=59  Identities=24%  Similarity=0.406  Sum_probs=53.1

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ..+.+++|+|++  ++.++++++++. ++++.|.+++++++||++ + |+++|+|+.+|+++..
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dll~~~  129 (135)
T 2rc3_A           71 VKDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLD-D-GKVIGLLSIGDLVKDA  129 (135)
T ss_dssp             GGGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHH
T ss_pred             cccCCHHHhccC--CCeEECCCCcHH-HHHHHHHHhCCCEEEEEe-C-CEEEEEEEHHHHHHHH
Confidence            467899999986  677899999998 999999999999999998 4 8999999999998754

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.27  E-value=5e-07  Score=69.94  Aligned_cols=59  Identities=22%  Similarity=0.288  Sum_probs=53.1

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ..+.+++++|++  ++.++++++++. ++++.+.+++++++||+++  |+++|+++.+|+++..
T Consensus        62 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l  120 (125)
T 1pbj_A           62 LAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAK  120 (125)
T ss_dssp             TTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             ccccCHHHHcCC--CCeEECCCCCHH-HHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            457789999986  677899999998 9999999999999999985  8999999999998754

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.27  E-value=6.1e-07  Score=70.14  Aligned_cols=58  Identities=10%  Similarity=0.201  Sum_probs=51.3

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++++|.|   +.++++++++. ++++.|.+++.+++||++++ |+++|+|+.+|+++..
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           67 EAFSMDKVLRT---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELI  124 (127)
T ss_dssp             CCCCHHHHCBC---CCEEETTCBHH-HHHHHHHHTTCCEEEEECTT-SCEEEEEEHHHHHHHC
T ss_pred             CCCCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHH
Confidence            46789999964   56899999998 99999999999999999864 8999999999998754

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.27  E-value=9.3e-07  Score=69.34  Aligned_cols=58  Identities=17%  Similarity=0.184  Sum_probs=51.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++++|.|   +.++++++++. ++++.|.+++..++||++++ |+++|+++.+|+++..
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~pVvd~~-g~~~Giit~~Dil~~l  124 (129)
T 3jtf_A           67 PALDIRSLVRP---AVFIPEVKRLN-VLLREFRASRNHLAIVIDEH-GGISGLVTMEDVLEQI  124 (129)
T ss_dssp             TTSCGGGGCBC---CCEEETTCBHH-HHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHH
T ss_pred             CCcCHHHHhCC---CeEeCCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHH
Confidence            46789999964   67899999998 99999999999999999864 8999999999998753

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.25  E-value=1.2e-06  Score=70.29  Aligned_cols=57  Identities=14%  Similarity=0.170  Sum_probs=51.2

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      +.+++++| +  ++.++++++++. ++++.|.+++.+++||++++ |+++|+|+.+|+++..
T Consensus        87 ~~~v~~~m-~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~~~Giit~~dil~~l  143 (148)
T 3lv9_A           87 KIELEEIL-R--DIIYISENLTID-KALERIRKEKLQLAIVVDEY-GGTSGVVTIEDILEEI  143 (148)
T ss_dssp             CCCGGGTC-B--CCEEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SSEEEEEEHHHHHHHH
T ss_pred             CccHHHhc-C--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHH
Confidence            77899999 3  567899999998 99999999999999999864 8999999999998754

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.24  E-value=1.5e-06  Score=71.85  Aligned_cols=58  Identities=16%  Similarity=0.135  Sum_probs=51.8

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++++| +  ++.++++++++. ++++.|.+++.+++||++++ |+++|+|+.+|+++..
T Consensus       105 ~~~~v~~im-~--~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dil~~l  162 (172)
T 3lhh_A          105 ERLELVDLV-K--NCNFVPNSLSGM-ELLEHFRTTGSQMVFVVDEY-GDLKGLVTLQDMMDAL  162 (172)
T ss_dssp             CCCCGGGGC-B--CCEEEETTCCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             CcccHHHHh-c--CCeEeCCCCCHH-HHHHHHHHcCCeEEEEEeCC-CCEEEEeeHHHHHHHH
Confidence            467899999 3  678999999998 99999999999999999864 8999999999998754

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.23  E-value=1e-06  Score=72.18  Aligned_cols=61  Identities=21%  Similarity=0.305  Sum_probs=54.2

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       200 ~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~  265 (304)
                      ...+.+|+++|++  ++.++++++++. ++++.|.+++++++||+++  |+++|+|+.+|+++...
T Consensus        89 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~  149 (165)
T 3fhm_A           89 ASLQQSVSVAMTK--NVVRCQHNSTTD-QLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARI  149 (165)
T ss_dssp             GGGTSBGGGTSBS--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTT
T ss_pred             ccccCCHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            3456899999985  677899999998 9999999999999999985  89999999999998653

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.23  E-value=1.2e-06  Score=70.75  Aligned_cols=58  Identities=17%  Similarity=0.150  Sum_probs=51.9

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++++| +  ++.++++++++. ++++.|.+++..++||++++ |+++|+|+.+|+++..
T Consensus        84 ~~~~v~~~m-~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~~vGivt~~dil~~l  141 (153)
T 3oco_A           84 DKAKISTIM-R--DIVSVPENMKVP-DVMEEMSAHRVPMAIVIDEY-GGTSGIITDKDVYEEL  141 (153)
T ss_dssp             TTSBGGGTC-B--CCEEEETTSBHH-HHHHHHHHTTCSCEEEECTT-SCEEEEECHHHHHHHH
T ss_pred             CCCcHHHHh-C--CCeEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CCEEEEeeHHHHHHHH
Confidence            367899999 3  678999999998 99999999999999999864 8999999999998754

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.22  E-value=6.4e-07  Score=70.29  Aligned_cols=59  Identities=25%  Similarity=0.465  Sum_probs=53.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~  265 (304)
                      .+.+++++|++  ++.++++++++. ++++.|.+++++++||+++  |+++|+++.+|+++...
T Consensus        72 ~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l~  130 (133)
T 1y5h_A           72 NTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHLP  130 (133)
T ss_dssp             TTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTCC
T ss_pred             cccCHHHHhcC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            46789999986  677899999998 9999999999999999985  79999999999987653

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.22  E-value=7.9e-07  Score=69.74  Aligned_cols=58  Identities=19%  Similarity=0.326  Sum_probs=52.0

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      +.+++++|.+  ++.++++++++. ++++.+.+++++++||++++ |+++|+|+.+|+++..
T Consensus        66 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dll~~~  123 (133)
T 2ef7_A           66 ETKAEEFMTA--SLITIREDSPIT-GALALMRQFNIRHLPVVDDK-GNLKGIISIRDITRAI  123 (133)
T ss_dssp             TCBGGGTSEE--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             ccCHHHHcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHH
Confidence            5689999986  677899999998 99999999999999999864 8999999999998754

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.22  E-value=7.5e-07  Score=70.62  Aligned_cols=62  Identities=16%  Similarity=0.232  Sum_probs=52.2

Q ss_pred             cccccccccccccc----eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIA----ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~----~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ..+.+++++|+++.    ++.++++++++. ++++.|.+++++++||++++ |+++|+|+.+|+++..
T Consensus        74 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~~~Giit~~dil~~l  139 (144)
T 2nyc_A           74 DLSLSVGEALMRRSDDFEGVYTCTKNDKLS-TIMDNIRKARVHRFFVVDDV-GRLVGVLTLSDILKYI  139 (144)
T ss_dssp             -CCSBHHHHHHHCC------CEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             cCCccHHHHHhcCccccCCCeEECCCCcHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEHHHHHHHH
Confidence            34678999998642    678999999998 99999999999999999864 8999999999998753

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.22  E-value=8.2e-07  Score=69.42  Aligned_cols=57  Identities=14%  Similarity=0.133  Sum_probs=51.0

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+++++|++  ++.++++++++. ++++.+.+++++++||++++ |+++|+++.+|+++..
T Consensus        68 ~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~-g~~~Giit~~dll~~l  124 (128)
T 3gby_A           68 EKLGEELLE--TVRSYRPGEQLF-DNLISVAAAKCSVVPLADED-GRYEGVVSRKRILGFL  124 (128)
T ss_dssp             CBCCGGGCB--CCCCBCTTSBGG-GSHHHHHHCSSSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             CcHHHHccC--CCcEECCCCCHH-HHHHHHHhCCCcEEEEECCC-CCEEEEEEHHHHHHHH
Confidence            679999985  677899999999 99999999999999999864 8999999999998753

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.21  E-value=5.2e-07  Score=74.43  Aligned_cols=61  Identities=25%  Similarity=0.436  Sum_probs=53.7

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       200 ~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ...+.+++++|++  ++.++++++++. ++++.|.+++++++||++++ |+++|+|+.+|+++..
T Consensus        94 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dil~~~  154 (180)
T 3sl7_A           94 KTYGKVVGDLMTP--SPLVVRDSTNLE-DAARLLLETKFRRLPVVDAD-GKLIGILTRGNVVRAA  154 (180)
T ss_dssp             TTTTCBHHHHSEE--SCCCEETTSBHH-HHHHHHTTSTTCEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             ccccccHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHH
Confidence            3457789999986  567899999998 99999999999999999864 8999999999998753

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.20  E-value=5.8e-07  Score=72.95  Aligned_cols=59  Identities=24%  Similarity=0.396  Sum_probs=52.7

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ..+.+++|+|+|   +.++++++++. ++++.|.+++++++||++++ |+++|+|+.+|+++..
T Consensus        93 ~~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dll~~l  151 (157)
T 1o50_A           93 LIAKNASEIMLD---PVYVHMDTPLE-EALKLMIDNNIQEMPVVDEK-GEIVGDLNSLEILLAL  151 (157)
T ss_dssp             CSSCBHHHHCBC---CCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             HcCCcHHHHcCC---CeEECCCCCHH-HHHHHHHHCCCcEEEEEcCC-CEEEEEEEHHHHHHHH
Confidence            467789999986   67899999998 99999999999999999854 8999999999998754

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.20  E-value=9.9e-07  Score=71.67  Aligned_cols=56  Identities=14%  Similarity=0.196  Sum_probs=50.1

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      .+.+++++|.|   +.++++++++. ++++.|.+++.+++||++++ |+++|+|+.+|+++
T Consensus       101 ~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~-g~~~Givt~~Dile  156 (156)
T 3oi8_A          101 EQFHLKSILRP---AVFVPEGKSLT-ALLKEFREQRNHMAIVIDEY-GGTSGLVTFEDIIE  156 (156)
T ss_dssp             GGCCHHHHCBC---CCEEETTSBHH-HHHHHHHHTTCCEEEEECTT-SSEEEEEEHHHHCC
T ss_pred             CcccHHHHcCC---CEEECCCCCHH-HHHHHHHhcCCeEEEEECCC-CCEEEEEEHHHhcC
Confidence            56789999964   67899999998 99999999999999999864 89999999999863

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.19  E-value=1.3e-06  Score=69.29  Aligned_cols=57  Identities=11%  Similarity=0.174  Sum_probs=51.2

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      +.+++++|++  ++.+++++ ++. ++++.|.+++.+++||++++ |+++|+|+.+|+++..
T Consensus        70 ~~~v~~~m~~--~~~~v~~~-~l~-~a~~~m~~~~~~~l~Vvd~~-g~~~Giit~~dll~~~  126 (141)
T 2rih_A           70 DGPAMPIANS--PITVLDTD-PVH-VAAEKMRRHNIRHVVVVNKN-GELVGVLSIRDLCFER  126 (141)
T ss_dssp             TSBSGGGCBC--CCEEETTS-BHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHSCH
T ss_pred             CCCHHHHcCC--CCeEEcCC-CHH-HHHHHHHHcCCeEEEEEcCC-CcEEEEEEHHHHHHHH
Confidence            5789999986  77899999 998 99999999999999999854 8999999999998753

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.19  E-value=1.5e-06  Score=68.20  Aligned_cols=58  Identities=14%  Similarity=0.201  Sum_probs=51.1

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++++|.   ++.++++++++. ++++.|.+++.+++||++++ |+++|+|+.+|+++..
T Consensus        70 ~~~~v~~~m~---~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~~vGivt~~dil~~l  127 (130)
T 3i8n_A           70 GQKQLGAVMR---PIQVVLNNTALP-KVFDQMMTHRLQLALVVDEY-GTVLGLVTLEDIFEHL  127 (130)
T ss_dssp             TTSBHHHHSE---ECCEEETTSCHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             CcCCHHHHhc---CCcCcCCCCcHH-HHHHHHHHcCCeEEEEEcCC-CCEEEEEEHHHHHHHH
Confidence            3678999995   467899999998 99999999999999999864 8999999999998653

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.18  E-value=1.1e-06  Score=70.60  Aligned_cols=57  Identities=19%  Similarity=0.298  Sum_probs=51.2

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLT  262 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~  262 (304)
                      ..+.+++++|++  ++.++++++++. ++++.|.+++++++||+++  ++++|+|+.+|+++
T Consensus        92 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--~~~~Giit~~dil~  148 (149)
T 3k2v_A           92 MRDASIADVMTR--GGIRIRPGTLAV-DALNLMQSRHITCVLVADG--DHLLGVVHMHDLLR  148 (149)
T ss_dssp             CTTCBHHHHSEE--SCCEECTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHTC
T ss_pred             cccCcHHHHcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEecC--CEEEEEEEHHHhhc
Confidence            457789999986  567899999998 9999999999999999986  39999999999975

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.13  E-value=2.5e-06  Score=68.29  Aligned_cols=58  Identities=10%  Similarity=0.276  Sum_probs=50.9

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ..+.+|+++|++  ++.++++++++. ++++.+.++++  +||++++ |+++|+|+.+|+++..
T Consensus        84 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~--l~Vvd~~-g~~~Giit~~dil~~l  141 (150)
T 3lqn_A           84 LEEMKVEQVMKQ--DIPVLKLEDSFA-KALEMTIDHPF--ICAVNED-GYFEGILTRRAILKLL  141 (150)
T ss_dssp             GGGCBGGGTCBS--SCCEEETTCBHH-HHHHHHHHCSE--EEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             HhcCCHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCE--EEEECCC-CcEEEEEEHHHHHHHH
Confidence            356789999985  678899999998 99999999887  9999864 8999999999998754

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.13  E-value=1.2e-06  Score=68.86  Aligned_cols=58  Identities=19%  Similarity=0.159  Sum_probs=50.6

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ...+++++|.   ++.++++++++. ++++.|.+++.+++||++++ |+++|+++.+|+++..
T Consensus        68 ~~~~v~~~m~---~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~l  125 (130)
T 3hf7_A           68 TKEIMLRAAD---EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEI  125 (130)
T ss_dssp             CHHHHHHHSB---CCCEEETTCBHH-HHHHHHHHHCCCEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             chhhHHHhcc---CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEcCC-CCEEEEeeHHHHHHHH
Confidence            3467899994   467899999998 99999999999999999864 8999999999998754

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.09  E-value=2.1e-06  Score=73.38  Aligned_cols=59  Identities=14%  Similarity=0.227  Sum_probs=53.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++++|++  +++++++++++. ++++.|.+++...+||+|++ |+++|+|+.+|++...
T Consensus       114 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVD~~-g~lvGiIT~~Dil~~i  172 (205)
T 3kxr_A          114 PHEPLISLLSE--DSRALTANTTLL-DAAEAIEHSREIELPVIDDA-GELIGRVTLRAATALV  172 (205)
T ss_dssp             TTSBGGGGCCS--SCCCEETTSCHH-HHHHHHHTSSCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             CcchHHHHhcC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHH
Confidence            56789999985  678899999998 99999999999999999864 8999999999998754

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.09  E-value=1.3e-06  Score=68.87  Aligned_cols=58  Identities=22%  Similarity=0.368  Sum_probs=50.8

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcC-----CceeeeeeCCCCcEEEEEEechhccc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG-----HSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~-----~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      .+.+++++|++  ++.++++++++. ++++.+.+++     ++++||++++ |+++|+++.+|+++.
T Consensus        71 ~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dll~~  133 (138)
T 2p9m_A           71 LETTIGDVMTK--DVITIHEDASIL-EAIKKMDISGKKEEIINQLPVVDKN-NKLVGIISDGDIIRT  133 (138)
T ss_dssp             SSCBHHHHSCS--SCCCEETTSBHH-HHHHHHTCC-----CCCEEEEECTT-SBEEEEEEHHHHHHH
T ss_pred             CCcCHHHHhCC--CcEEECCCCCHH-HHHHHHHhcCCccccccEEEEECCC-CeEEEEEEHHHHHHH
Confidence            46789999986  677899999998 9999999999     9999999854 899999999999864

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.09  E-value=1.9e-06  Score=70.16  Aligned_cols=58  Identities=19%  Similarity=0.253  Sum_probs=52.5

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++++|++  ++.++++++++. ++++.|.+++.+++||+++  |+++|+|+.+|+++..
T Consensus        76 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~lvGiit~~dil~~~  133 (160)
T 2o16_A           76 FETPLFEVMHT--DVTSVAPQAGLK-ESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIA  133 (160)
T ss_dssp             CCCBHHHHSCS--CEEEBCTTSBHH-HHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHH
T ss_pred             cccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            56789999986  788999999998 9999999999999999985  8999999999998753

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.06  E-value=1e-06  Score=72.01  Aligned_cols=58  Identities=14%  Similarity=0.289  Sum_probs=50.0

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      +.+.+|+++|++  ++.++++++++. ++++.|.++++  +||++++ |+++|+|+.+|++++.
T Consensus        83 ~~~~~v~~im~~--~~~~v~~~~~l~-~~~~~m~~~~~--lpVVd~~-g~l~GiiT~~Dil~~~  140 (156)
T 3k6e_A           83 MADTDIVHMTKT--DVAVVSPDFTIT-EVLHKLVDESF--LPVVDAE-GIFQGIITRKSILKAV  140 (156)
T ss_dssp             HTTSBGGGTCBC--SCCCBCTTCCHH-HHHHHTTTSSE--EEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             ccccCHHHhhcC--CceecccccHHH-HHHHHHHHcCC--eEEEecC-CEEEEEEEHHHHHHHH
Confidence            356789999985  778899999998 99999987665  9999865 8999999999998754

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.03  E-value=5.2e-06  Score=65.40  Aligned_cols=58  Identities=21%  Similarity=0.361  Sum_probs=51.9

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++++|.+  ++.++++++++. ++++.|.+++++++ |++++ |+++|+++.+|+++..
T Consensus        70 ~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l-Vvd~~-g~~~Giit~~dil~~~  127 (138)
T 2yzi_A           70 YDIPVERIMTR--NLITANVNTPLG-EVLRKMAEHRIKHI-LIEEE-GKIVGIFTLSDLLEAS  127 (138)
T ss_dssp             TTSBGGGTCBC--SCCEEETTSBHH-HHHHHHHHHTCSEE-EEEET-TEEEEEEEHHHHHHHH
T ss_pred             ccCCHHHHhhC--CCeEECCCCcHH-HHHHHHHhcCCCEE-EECCC-CCEEEEEEHHHHHHHH
Confidence            46789999986  677899999998 99999999999999 99864 8999999999998754

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.01  E-value=4e-06  Score=67.57  Aligned_cols=58  Identities=16%  Similarity=0.236  Sum_probs=51.1

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ..+.+++++|++  ++.++++++++. ++++.|.++++  +||++++ |+++|+|+.+|+++..
T Consensus        80 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~--l~Vvd~~-g~~~Giit~~dil~~~  137 (157)
T 2emq_A           80 LETMKVEEVMNR--NIPRLRLDDSLM-KAVGLIVNHPF--VCVENDD-GYFAGIFTRREVLKQL  137 (157)
T ss_dssp             GGTCBGGGTCBC--CCCEEETTSBHH-HHHHHHHHSSE--EEEECSS-SSEEEEEEHHHHHHHH
T ss_pred             hcCCcHHHHhCC--CCceecCCCcHH-HHHHHHhhCCE--EEEEcCC-CeEEEEEEHHHHHHHH
Confidence            356789999986  778999999998 99999999988  9999864 8999999999998754

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=97.98  E-value=4.6e-06  Score=69.04  Aligned_cols=59  Identities=12%  Similarity=0.202  Sum_probs=52.6

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ..+.+++++|++  ++.++++++++. ++++.|.+++++++||++ + |+++|+|+.+|+++..
T Consensus       105 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vvd-~-g~~vGiit~~dll~~l  163 (185)
T 2j9l_A          105 PPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGLRQCLVTH-N-GRLLGIITKKDVLKHI  163 (185)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHH
T ss_pred             ccCccHHHhhCc--CCeEeCCCCCHH-HHHHHHHhCCCcEEEEEE-C-CEEEEEEEHHHHHHHH
Confidence            456789999986  677899999998 999999999999999998 3 8999999999998754

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=97.95  E-value=4.2e-06  Score=67.83  Aligned_cols=58  Identities=19%  Similarity=0.269  Sum_probs=50.7

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ..+.+|+++|.+  ++.++++++++. ++++.+.++++  +||++++ |+++|+|+.+|+++..
T Consensus        83 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~--lpVvd~~-g~~vGiit~~dil~~~  140 (159)
T 1yav_A           83 LDQITVEEVMLT--DIPRLHINDPIM-KGFGMVINNGF--VCVENDE-QVFEGIFTRRVVLKEL  140 (159)
T ss_dssp             TTTSBHHHHSBC--SCCEEETTSBHH-HHHHHTTTCSE--EEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             hccCCHHHhcCC--CCceEcCCCCHH-HHHHHHHhCCE--EEEEeCC-CeEEEEEEHHHHHHHH
Confidence            457789999986  677899999998 99999998877  9999864 8999999999998753

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.90  E-value=6.2e-06  Score=73.60  Aligned_cols=60  Identities=18%  Similarity=0.429  Sum_probs=53.4

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~  265 (304)
                      .+.+++++|++  +++++++++++. ++++.|.+++.+.+||++++ |+++|+|+..|++....
T Consensus       197 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          197 PRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             TTCBSTTTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHC-
T ss_pred             CCCcHHHHhCC--CCeEEeCCCCHH-HHHHHHHhcCCCEEEEEeCC-CeEEEEEEHHHHHHHHH
Confidence            56789999975  678899999998 99999999999999999865 89999999999988654

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.85  E-value=6.2e-06  Score=79.99  Aligned_cols=62  Identities=24%  Similarity=0.355  Sum_probs=0.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~  265 (304)
                      .+.+|+|+|+|+.+++++++++++. ++++.|.+++.+++||+|++ ++++|+|+.+|+++...
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLS-EANKIIWEKKLNALPIIDDD-QHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEecHHHHhhh
Confidence            4568999999876799999999999 99999999999999999865 89999999999988653

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=97.84  E-value=1.3e-05  Score=79.98  Aligned_cols=57  Identities=9%  Similarity=0.031  Sum_probs=49.6

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc
Q 022005          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE  266 (304)
Q Consensus       205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~  266 (304)
                      +++|+|++  +++++++|+++. |+.+.|.+++.+++||+| + |+++|+|+.+|+++...+
T Consensus       569 ~v~~iMt~--~pitV~~~~~l~-ea~~~M~~~~i~~lpVve-~-G~lvGIVT~~Dll~~~~~  625 (632)
T 3org_A          569 SLVVPCDV--SPIVVTSYSLVR-QLHFLFVMLMPSMIYVTE-R-GKLVGIVEREDVAYGYSN  625 (632)
T ss_dssp             --CCSCCC--CCCEEETTCBHH-HHHHHHHHTCCSEEEEEE-T-TEEEEEEEGGGTEECCCC
T ss_pred             ccchhhcC--CCceecCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEehhhHHHHHhh
Confidence            48999986  678999999998 999999999999999994 4 899999999999987643

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=97.81  E-value=9.6e-06  Score=72.81  Aligned_cols=59  Identities=12%  Similarity=0.354  Sum_probs=53.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+|+++|++  +++++++++++. ++.+.|.+++.+++||++++ |+++|+|+.+|++...
T Consensus       199 ~~~~v~~im~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIT~~Dil~~i  257 (286)
T 2oux_A          199 DDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDVI  257 (286)
T ss_dssp             TTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             CCCcHHHHcCC--CCeeecCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHH
Confidence            56789999985  678899999998 99999999999999999864 8999999999998754

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=97.79  E-value=1e-05  Score=65.49  Aligned_cols=60  Identities=12%  Similarity=0.054  Sum_probs=51.2

Q ss_pred             ccccccccccccc----eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIA----ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~----~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++++|.+..    .+.++++++++. ++++.|.+++.+++||++ + |+++|+|+.+|+++..
T Consensus        82 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~l~Giit~~dil~~~  145 (164)
T 2pfi_A           82 HQQCLQDILARGCPTEPVTLTLFSETTLH-QAQNLFKLLNLQSLFVTS-R-GRAVGCVSWVEMKKAI  145 (164)
T ss_dssp             CCCBHHHHHHTTCCCBCCCCCEETTCBHH-HHHHHHHHTTCSEEEEEE-T-TEEEEEEEHHHHHHHH
T ss_pred             ccchhhhhhcccccccCCceEECCCCcHH-HHHHHHHHhCCCEEEEEE-C-CEEEEEEEHHHHHHHH
Confidence            3567999998631    167899999998 999999999999999998 3 8999999999998754

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=97.74  E-value=2e-05  Score=65.33  Aligned_cols=57  Identities=14%  Similarity=0.109  Sum_probs=49.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++ +|.   ++.++++++++. ++++.|.+++..++||++++ |+++|+|+.+|+++..
T Consensus        99 ~~~~v~-~~~---~~~~v~~~~~l~-~al~~m~~~~~~~~~Vvde~-g~lvGiIT~~Dil~~l  155 (173)
T 3ocm_A           99 GRVRRN-RLR---DPIIVHESIGIL-RLMDTLKRSRGQLVLVADEF-GAIEGLVTPIDVFEAI  155 (173)
T ss_dssp             SSCCGG-GSB---CCCEECGGGCHH-HHHHHHHHSTTCCEEEECTT-CCEEEEECHHHHHHHH
T ss_pred             CcchhH-hcC---CCeEECCCCcHH-HHHHHHHHcCCeEEEEEeCC-CCEEEEEeHHHHHHHH
Confidence            456788 553   567899999998 99999999999999999864 8999999999998754

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.66  E-value=2.6e-05  Score=75.06  Aligned_cols=59  Identities=19%  Similarity=0.439  Sum_probs=53.4

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++|+|++  ++++++++++++ ++.+.|.+++...+||+|++ |+++|+|+.+|+++..
T Consensus       217 ~~~~v~dim~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVDe~-g~lvGiIT~~Dil~~i  275 (473)
T 2zy9_A          217 PRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVL  275 (473)
T ss_dssp             TTSBGGGTSBS--SCCCEESSSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             CCCcHHHHhCC--CCeEEeCCCcHH-HHHHHHHhcCCcEEEEEcCC-CEEEEEEehHhhHHHH
Confidence            57789999985  678999999998 99999999999999999865 8999999999998754

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.66  E-value=6.5e-06  Score=79.59  Aligned_cols=61  Identities=18%  Similarity=0.251  Sum_probs=0.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+|+|+|+|+.+++++++++++. ++.+.|.+++...+||+|++ ++++|+|+.+|+++..
T Consensus       145 ~~~~V~~vMtp~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          145 AGDTVAAIMTPKDKLVTAREGTPLE-EMKAKLYENRIEKMLVVDEN-FYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             cCCcHHHHhccCCCCEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHhhhhc
Confidence            4568999999877789999999999 99999999999999999865 8999999999998753

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.62  E-value=2.6e-05  Score=75.68  Aligned_cols=61  Identities=18%  Similarity=0.260  Sum_probs=54.7

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      -.+.+|+|+|++ .+++++++++++. ++++.+.+++..++||+|++ ++++|+|+.+|+++..
T Consensus       172 ~~~~~V~~vM~~-~~~vtv~~~~~l~-eal~~m~~~~i~~lpVVDe~-g~l~GiIT~~Dil~~~  232 (511)
T 3usb_A          172 DYSIKISDVMTK-EQLITAPVGTTLS-EAEKILQKYKIEKLPLVDNN-GVLQGLITIKDIEKVI  232 (511)
T ss_dssp             CSSSBHHHHCCC-CCCCCEETTCCHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             cCCCcHHHhccc-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEeCC-CCEeeeccHHHHHHhh
Confidence            356789999996 6788999999998 99999999999999999865 8999999999998753

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=97.61  E-value=8.7e-06  Score=78.82  Aligned_cols=61  Identities=18%  Similarity=0.232  Sum_probs=44.3

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++|+|+|+.+++++++++++. ++.+.+.+++..++||+|++ |+++|+|+.+|+++..
T Consensus       147 ~~~~v~diM~p~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          147 LTKSVAAVMTPKERLATVKEGATGA-EVQEKMHKARVEKILVVNDE-FQLKGMITAKDFHKAE  207 (496)
T ss_dssp             TTSBGGGTSEEGGGCCEEECC-----CGGGTCC---CCCEEEECTT-SBCCEEECCC-----C
T ss_pred             CCCcHHHHhcCCCCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEeehHhHHHHhh
Confidence            4678999999877789999999998 99999999999999999875 8999999999998753

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.41  E-value=2e-05  Score=76.23  Aligned_cols=61  Identities=18%  Similarity=0.419  Sum_probs=3.5

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++|+|+|+.+++++++++++. ++++.+.+++..++||+|++ ++++|+++.+|+++..
T Consensus       153 ~~~~v~~im~~~~~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~~  213 (494)
T 1vrd_A          153 LSKKIKDLMTPREKLIVAPPDISLE-KAKEILHQHRIEKLPLVSKD-NKLVGLITIKDIMSVI  213 (494)
T ss_dssp             ----------------------------------------------------------CHHHH
T ss_pred             CCCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHhhh
Confidence            3568999999877889999999999 99999999999999999865 8999999999998753

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=97.38  E-value=0.00014  Score=63.99  Aligned_cols=52  Identities=13%  Similarity=0.178  Sum_probs=47.2

Q ss_pred             ccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          208 DAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       208 diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+|.|  .++++.+++++. ++.++|...|..++||+++  |+++|||+.||++++.
T Consensus       193 ~~md~--sP~tv~~~tsL~-~v~~LF~~lglr~l~V~~~--GrLVGIVTrkDl~kai  244 (250)
T 2d4z_A          193 CRIDQ--SPFQLVEGTSLQ-KTHTLFSLLGLDRAYVTSM--GKLVGVVALAEIQAAI  244 (250)
T ss_dssp             SCEEC--CSCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             ccccC--CCeEECCCCcHH-HHHHHHHHhCCeEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            46886  788999999998 9999999999999999973  8999999999998864

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.30  E-value=4e-05  Score=74.46  Aligned_cols=61  Identities=16%  Similarity=0.273  Sum_probs=42.6

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++|+|+++.+++++++++++. ++.+.+.+++..++||+|++ ++++|+++.+|+++..
T Consensus       171 ~~~~v~~vm~~~~~~~tv~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          171 HTTLLSEVMTPRIELVVAPAGVTLK-EANEILQRSKKGKLPIVNDC-DELVAIIARTDLKKNR  231 (514)
T ss_dssp             ----------CCBCCCCEETTCCST-TTTTHHHHHTCSCCCEESSS-SCCC----CCCCSSCC
T ss_pred             CCCCHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCCcccEECCC-CeEEEEEEHHHHHHHh
Confidence            4568999999766888999999999 99999999999999999865 8999999999998764

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.29  E-value=3.7e-05  Score=74.04  Aligned_cols=58  Identities=19%  Similarity=0.300  Sum_probs=0.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      .+.+|+|+||+  ++++++.+.+++ ++.+.+.+++..++||+|++ ++++|+|+.+|+.+.
T Consensus       198 ~~~~V~evMT~--~lvt~~~~~~le-eA~~iL~~~kieklpVVd~~-g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          198 AETPIKSVMTT--EVVTGSSPITLE-KANSLLRETKKGKLPIVDSN-GHLVSLVARSDLLKN  255 (556)
T ss_dssp             --------------------------------------------------------------
T ss_pred             cceEhhhhccc--ceEEecCCCCHH-HHHHHHHHccccceeEEccC-CcEEEEEEechhhhh
Confidence            35689999997  699999999998 99999999999999999875 899999999999864

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=97.14  E-value=0.00029  Score=67.91  Aligned_cols=60  Identities=17%  Similarity=0.308  Sum_probs=53.1

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++|+|++ .+++++++++++. ++++.+.+++..++||+|++ ++++|+++.+|+++..
T Consensus       150 ~~~~v~~im~~-~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVd~~-g~lvGivt~~Dil~~~  209 (491)
T 1zfj_A          150 YNAPISEHMTS-EHLVTAAVGTDLE-TAERILHEHRIEKLPLVDNS-GRLSGLITIKDIEKVI  209 (491)
T ss_dssp             SSSBTTTSCCC-SCCCCEETTCCHH-HHHHHHHHTTCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             CCCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHHHHHH
Confidence            56789999985 2677899999998 99999999999999999865 8999999999998753

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.00  E-value=0.00038  Score=67.72  Aligned_cols=70  Identities=13%  Similarity=0.159  Sum_probs=54.4

Q ss_pred             HHHHHhhhh---ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC---CCcEEEEEEechhcccC
Q 022005          191 ETTIIAGAL---ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE---PTNIIGLILVKNLLTIH  264 (304)
Q Consensus       191 e~~~i~~~l---~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~---~~~ivGiv~~kDll~~~  264 (304)
                      ++++++...   ...+.+|+++|++  +++++++++++. ++.+.|.++++  .||++++   .++++|+|+.+|+++..
T Consensus       435 ~~Dll~~l~~~~~~~~~~V~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l  509 (527)
T 3pc3_A          435 QETLITQIVSMNRQQSDPAIKALNK--RVIRLNESEILG-KLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFI  509 (527)
T ss_dssp             HHHHHHHHHHHCCCTTSBGGGGEET--TCCEEETTSBHH-HHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHhccCcCCCcHHHHhcC--CCeEECCCCcHH-HHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHH
Confidence            445554443   2346789999985  778999999998 99999966654  6999874   37999999999999865


Q ss_pred             C
Q 022005          265 P  265 (304)
Q Consensus       265 ~  265 (304)
                      .
T Consensus       510 ~  510 (527)
T 3pc3_A          510 A  510 (527)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=96.90  E-value=0.00014  Score=70.05  Aligned_cols=60  Identities=23%  Similarity=0.444  Sum_probs=0.4

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~  265 (304)
                      .+.+++++|++  +++++++++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++...
T Consensus       148 ~~~~v~~im~~--~~~~v~~~~~l~-eal~~m~~~~~~~lpVVde~-g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          148 EGKLVKELMTK--EVITVPESIEVE-EALKIMIENRIDRLPVVDER-GKLVGLITMSDLVARKK  207 (486)
T ss_dssp             ---------------------------------------------------------------C
T ss_pred             CCCCHHHHccC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEecC-CeEEEEEEHHHHHHhhh
Confidence            35689999986  678999999998 99999999999999999865 89999999999988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	304
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	4e-05
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	0.002
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	0.003

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 7/68 (10%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNL 260
           +      D +   ++    D + ++ K+    ++  G    P++  +  + +G++ + + 
Sbjct: 10  MKSHRCYDLIPTSSKLVVFDTSLQV-KKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 68

Query: 261 LTIHPEDE 268
           + I     
Sbjct: 69  INILHRYY 76

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 9/79 (11%), Positives = 28/79 (35%), Gaps = 2/79 (2%)

Query: 186 ELTHDETTIIAGALE-LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVY 244
           ++   +   +      +  +T+ D +         D+     K  ++L+        P++
Sbjct: 1   DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLF-VKTSLSLLTLNNIVSAPLW 59

Query: 245 YEEPTNIIGLILVKNLLTI 263
             E     GL+ + + + +
Sbjct: 60  DSEANKFAGLLTMADFVNV 78

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 205 TASDAMTPIAETFAIDINAKLD---KELMNLILEKGHSRVPVYYEEPTN-IIGLILVKNL 260
            A D M P      + +  +     +++  +I E  +S  PV     +  ++G +L ++L
Sbjct: 4   LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 63

Query: 261 LTIHPEDEVP 270
           +         
Sbjct: 64  IISIENARKK 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	304
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.52
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.39
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.33
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.33
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.31
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.31
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.3
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.3
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.29
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.28
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.28
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.27
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.22
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.21
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.08
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.07
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.07
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.07
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.07
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.06
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.98
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.98
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.94
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.9
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.89
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.75
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.59
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.52
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.51
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.5
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.46
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.39
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.39
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.31
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.3
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.3
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.29
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.25
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.23
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.2
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.19
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.18
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.1
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.1
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.07
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.05
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.96
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	97.91
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	97.89
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	97.84
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	97.77
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	97.52

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.52  E-value=2.9e-15  Score=118.13  Aligned_cols=94  Identities=18%  Similarity=0.322  Sum_probs=82.8

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc---------cccCccc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE---------DEVPVKS  273 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~---------~~~~v~~  273 (304)
                      +.+|+|+|+|.++++++++++|++ ++++.|.++||+++||+|++ |+++|+++.+|+++....         ...++++
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~-~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~   78 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE   78 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH
T ss_pred             CCCHHHccccccceEEEcCCCCHH-HHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhccccccccccccccccc
Confidence            468999999999999999999998 99999999999999999865 899999999999864211         2357888


Q ss_pred             ccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          274 VTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       274 ~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +|.+++.+++++++     +.++++.|.++
T Consensus        79 ~m~~~~~~v~~~~~-----l~~~~~~~~~~  103 (132)
T d1yava3          79 VMLTDIPRLHINDP-----IMKGFGMVINN  103 (132)
T ss_dssp             HSBCSCCEEETTSB-----HHHHHHHTTTC
T ss_pred             cccccccccccchh-----HHHHHHHHHhC
Confidence            98889999999999     99999999754

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.39  E-value=5.9e-14  Score=115.86  Aligned_cols=111  Identities=11%  Similarity=0.131  Sum_probs=93.4

Q ss_pred             CChhHHHHHhhhhcc-ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005          187 LTHDETTIIAGALEL-TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       187 l~~~e~~~i~~~l~l-~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~  265 (304)
                      +++.|+..++.+.+| .+.+++|+|++..+++++++++++. ++.+.|.+++++++||++++.++++|+++.+|+++...
T Consensus         2 ~~~~~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~-~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~   80 (179)
T d2ooxe1           2 VQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK   80 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHH-HHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHH
Confidence            456788899999986 8999999999999999999999998 99999999999999999976689999999999975310


Q ss_pred             ---------cc--------------ccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          266 ---------ED--------------EVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       266 ---------~~--------------~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                               ..              .......|.+++++++++++     +.++++.|.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~s-----l~~~~~~m~~~  136 (179)
T d2ooxe1          81 YYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHS-----LMDACLAMSKS  136 (179)
T ss_dssp             HHHHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSB-----HHHHHHHHHHT
T ss_pred             hccccccchhhhhhhhccchhhhcccceeeeecccCceEECCCCc-----HHHHHHHhhhc
Confidence                     00              01233457789999999999     99999999764

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.33  E-value=7.7e-13  Score=103.25  Aligned_cols=93  Identities=15%  Similarity=0.215  Sum_probs=81.6

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC---ccccCccccccc
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---EDEVPVKSVTIR  277 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~---~~~~~v~~~~~~  277 (304)
                      +++.+|+|+|++  +++++++++|+. ++.+.+.+++++++||+++  |+++|+++.+|+++...   ..+.++.++|.+
T Consensus         1 l~~~~V~d~m~~--~~v~v~~~~tl~-~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (127)
T d2ef7a1           1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (127)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CCccCHHHhCCC--CCeEECCcCcHH-HHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhccccchhhhhhhh
Confidence            467899999986  889999999998 9999999999999999974  78999999999987432   234688999889


Q ss_pred             ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          278 RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       278 ~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++.+++++++     +.++++.|.++
T Consensus        76 ~~~~v~~~~~-----l~~~~~~m~~~   96 (127)
T d2ef7a1          76 SLITIREDSP-----ITGALALMRQF   96 (127)
T ss_dssp             CCCCEETTSB-----HHHHHHHHHHH
T ss_pred             hccccccccc-----hhHHHHHHHHc
Confidence            9999999999     99999999764

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.33  E-value=2.4e-13  Score=107.85  Aligned_cols=91  Identities=18%  Similarity=0.236  Sum_probs=79.2

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC------------ccccCc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP------------EDEVPV  271 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~------------~~~~~v  271 (304)
                      ++|+|+|++  ++.++++++|+. ++++.|.+++++++||+|++ ++++|+++.+|+++...            ....++
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~lpVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v   77 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL   77 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCCBH
T ss_pred             EEHHHhCcC--CCeEECCcCCHH-HHHHHHHHcCCCeeeeeccc-ccccccccHHHHHHHHHhhhhhhhcccccccccch
Confidence            479999996  778999999998 99999999999999999865 89999999999975321            113578


Q ss_pred             ccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          272 KSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       272 ~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .++|.+++.+++++++     +.++++.|.++
T Consensus        78 ~~im~~~~~~v~~~~~-----l~~a~~~m~~~  104 (139)
T d2o16a3          78 FEVMHTDVTSVAPQAG-----LKESAIYMQKH  104 (139)
T ss_dssp             HHHSCSCEEEBCTTSB-----HHHHHHHHHHT
T ss_pred             hHhhccccccccccch-----HHHHHHHHHHc
Confidence            9998899999999999     99999999764

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.31  E-value=7.4e-13  Score=102.70  Aligned_cols=89  Identities=20%  Similarity=0.231  Sum_probs=61.3

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceec
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYL  283 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~  283 (304)
                      ++|+|+|++  +++++++++++. ++++.+.+++++++||++++ |+++|+++.+|++....  ..++.++|.+++.+++
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~G~it~~dl~~~~~--~~~~~~~~~~~~~~v~   74 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD--EEQLAMLVKRDVPVVK   74 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCCBSCCCEEE
T ss_pred             CCcccccCC--CCEEECCcCcHH-HHHHHHHHcCCcEEEEEecc-ccchhhhhcchhhhhhc--ccchhhccccceeecc
Confidence            478999997  788999999999 99999999999999999865 89999999999987643  3478888889999999


Q ss_pred             CCCCCchhHHHHHHHHHhhc
Q 022005          284 ISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       284 ~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++     +.++++.|.++
T Consensus        75 ~~~~-----l~~~~~~~~~~   89 (122)
T d2yzqa2          75 ENDT-----LKKAAKLMLEY   89 (122)
T ss_dssp             TTSB-----HHHHHHHHHHH
T ss_pred             hhhH-----HHHHHHHHHHc
Confidence            9999     99999999764

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.31  E-value=3.2e-12  Score=98.79  Aligned_cols=89  Identities=13%  Similarity=0.057  Sum_probs=79.4

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCccccCcccccccccceec
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYL  283 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~  283 (304)
                      ++|+++|++  ++.++++++|+. ++++.+.+++++.+||++++ ++++|+++.+|+++...  +.++.++|.+++.+++
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~-ea~~~m~~~~~~~v~Vvd~~-~~~~Gii~~~dl~~~~~--~~~v~~~~~~~~~~v~   74 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL--DSSVFNKVSLPDFFVH   74 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT--TSBSGGGCBCTTCCEE
T ss_pred             CCchhhhcC--CCeEECCCCCHH-HHHHhhhhcCcEEEEEEeCC-ceeEEEeehhhhhhhhc--cccccccccCccEEEC
Confidence            478999985  778999999998 99999999999999999864 89999999999987643  4578999889999999


Q ss_pred             CCCCCchhHHHHHHHHHhhc
Q 022005          284 ISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       284 ~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++++     +.++++.|+++
T Consensus        75 ~~~~-----l~~~~~~~~~~   89 (121)
T d1vr9a3          75 EEDN-----ITHALLLFLEH   89 (121)
T ss_dssp             TTSB-----HHHHHHHHHHC
T ss_pred             CCCC-----HHHHHHHHHhc
Confidence            9999     99999999764

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=5e-13  Score=103.76  Aligned_cols=91  Identities=11%  Similarity=0.177  Sum_probs=77.8

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC-Cc----cccCcccccccc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-PE----DEVPVKSVTIRR  278 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~-~~----~~~~v~~~~~~~  278 (304)
                      +||+|+|++  +++++++++++. ++++.|.+++++++||++++ |+++|+++.+|++... .+    ....++++|.++
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~   76 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDS   76 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTC
T ss_pred             CCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhhhhhcCCCcccceEEEEeecc
Confidence            479999986  788999999999 99999999999999999865 8999999999986532 11    234678888788


Q ss_pred             cceecCCCCCchhHHHHHHHHHhhc
Q 022005          279 IPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       279 ~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +.+++++++     +.++++.|.++
T Consensus        77 ~~~v~~~~~-----~~~~~~~m~~~   96 (123)
T d1y5ha3          77 IYYVDANAS-----IQEMLNVMEEH   96 (123)
T ss_dssp             CCCEETTCC-----HHHHHHHHHHH
T ss_pred             ceeeeecch-----HHHHHHHHHHc
Confidence            899999999     99999999754

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.30  E-value=2.4e-12  Score=101.07  Aligned_cols=91  Identities=14%  Similarity=0.215  Sum_probs=79.9

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc----cccCccccccccc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE----DEVPVKSVTIRRI  279 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~----~~~~v~~~~~~~~  279 (304)
                      .+|+|+|+.  +++++++++|+. ++++.+.+++++++||++++ ++++|+++.+|+++....    .+.+++++|.+++
T Consensus         5 ~pV~~im~~--~~~~v~~~~t~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~   80 (132)
T d2yzia1           5 APIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNL   80 (132)
T ss_dssp             SBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSC
T ss_pred             CcHHHHcCC--CCeEECCcCcHH-HHHHHHHHcCCcEEEEeccc-ceeeeeeeHHHHHHHHhhccCccceeEeecccccc
Confidence            479999985  889999999998 99999999999999999865 899999999999864321    2458999998999


Q ss_pred             ceecCCCCCchhHHHHHHHHHhhc
Q 022005          280 PRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       280 ~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .++.++++     +.++++.|.++
T Consensus        81 ~~v~~~~~-----~~~~~~~m~~~   99 (132)
T d2yzia1          81 ITANVNTP-----LGEVLRKMAEH   99 (132)
T ss_dssp             CEEETTSB-----HHHHHHHHHHH
T ss_pred             cccCcchH-----HHHHHHHHHHc
Confidence            99999999     99999999764

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.29  E-value=1.1e-12  Score=102.34  Aligned_cols=92  Identities=12%  Similarity=0.163  Sum_probs=79.5

Q ss_pred             cccccccccc-ceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC---C--ccccCccccccc
Q 022005          204 KTASDAMTPI-AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH---P--EDEVPVKSVTIR  277 (304)
Q Consensus       204 ~~V~diMtpr-~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~---~--~~~~~v~~~~~~  277 (304)
                      +||+|||+.+ .+++++++++|+. ++++.|.+++++++||+++  |+++|+++.+|+++..   .  ....+++++|.+
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~-~a~~~m~~~~~~~vpV~~~--~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~   78 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMKD--EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR   78 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC
T ss_pred             ccHHHHHccCCCccEEECCcCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEccchhhhhhhhcccccceeEeeeccc
Confidence            3799999875 4789999999999 9999999999999999974  7999999999997532   1  124689999989


Q ss_pred             ccceecCCCCCchhHHHHHHHHHhhc
Q 022005          278 RIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       278 ~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++.++.++++     +.++++.|.++
T Consensus        79 ~~~~v~~~~~-----l~~a~~~m~~~   99 (127)
T d2rc3a1          79 QVAYVDLNNT-----NEDCMALITEM   99 (127)
T ss_dssp             SCCCBCTTCB-----HHHHHHHHHHH
T ss_pred             eeEEeccCcc-----HHHHHHHHHHC
Confidence            9999999999     99999999764

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.28  E-value=2.8e-12  Score=102.05  Aligned_cols=91  Identities=18%  Similarity=0.272  Sum_probs=79.5

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC-C----ccccCcccccccc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH-P----EDEVPVKSVTIRR  278 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~-~----~~~~~v~~~~~~~  278 (304)
                      ++|+|+|++  ++.++++++|+. ++++.+.+++++++||++++ |+++|+++.+|+++.. .    ....+++++|.++
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~~V~d~~-~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~   78 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP   78 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSS
T ss_pred             EEHHHhCCC--CCcEECCcCcHH-HHHHHHHHCCCceEeeeccC-CcccceEEeechhhhhhhhcccccccccccccccc
Confidence            579999986  788999999998 99999999999999999865 8999999999997532 1    1245789998899


Q ss_pred             cceecCCCCCchhHHHHHHHHHhhc
Q 022005          279 IPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       279 ~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +.++.++++     +.++++.|.++
T Consensus        79 ~~~v~~~~~-----l~~~~~~m~~~   98 (142)
T d1pvma4          79 IPKVKSDYD-----VKDVAAYLSEN   98 (142)
T ss_dssp             CCEEETTCB-----HHHHHHHHHHH
T ss_pred             cccccchhh-----HHHHHHHHHHc
Confidence            999999999     99999999753

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=1e-12  Score=106.17  Aligned_cols=97  Identities=9%  Similarity=0.217  Sum_probs=82.1

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc-------------
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED-------------  267 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~-------------  267 (304)
                      |.+++++|+|++..++++++.++|+. ++++.+.+++++++||++++.++++|+++.+|++......             
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~-eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~   88 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEE   88 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGG
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHH-HHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhh
Confidence            45779999999999999999999998 9999999999999999987668999999999997532110             


Q ss_pred             ------ccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          268 ------EVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       268 ------~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                            .....+.|.+++++++++++     +.++++.|.++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~v~~~~~-----l~~v~~~m~~~  125 (159)
T d2v8qe2          89 HKIETWREVYLQDSFKPLVCISPNAS-----LFDAVSSLIRN  125 (159)
T ss_dssp             CBHHHHHHHHSSSSCCCCCCBCTTSB-----HHHHHHHHHHH
T ss_pred             hhcccccceeeeeeccceEEECCCCc-----HHHHHHHHHHh
Confidence                  11335677788999999999     99999999874

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.27  E-value=1.2e-12  Score=101.15  Aligned_cols=89  Identities=19%  Similarity=0.202  Sum_probs=78.1

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC----ccccCcccccccccc
Q 022005          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP----EDEVPVKSVTIRRIP  280 (304)
Q Consensus       205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~----~~~~~v~~~~~~~~~  280 (304)
                      +|+|+|++  +++++++++|+. ++++.+.+++++.+||.++  |+++|+++.+|+++...    ....++.++|.+++.
T Consensus         1 kV~diM~~--~~~~v~~~~sl~-ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~   75 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLV   75 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGG
T ss_pred             ChHHhCCC--CCeEECCcCcHH-HHHHHHHHcCceEEEEEeC--CcEEEEEEeeeccccccccccccceeEeeecccccc
Confidence            48999996  888999999998 9999999999999999874  79999999999987432    124588999889999


Q ss_pred             eecCCCCCchhHHHHHHHHHhhc
Q 022005          281 RYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       281 ~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++++++     +.++++.|+++
T Consensus        76 ~v~~~~~-----l~~a~~~m~~~   93 (120)
T d1pbja3          76 TISPRAT-----IKEAAEKMVKN   93 (120)
T ss_dssp             EECTTSC-----HHHHHHHHHHH
T ss_pred             cccchhH-----HHHHHHHHHHc
Confidence            9999999     99999999764

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.22  E-value=1.1e-11  Score=99.47  Aligned_cols=94  Identities=13%  Similarity=0.098  Sum_probs=80.0

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC---------------
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP---------------  265 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~---------------  265 (304)
                      +++.+|+++|.+  +++++++++++. ++++.|.+++++++||++++ |+++|+++.+|++....               
T Consensus         1 ~~~~~v~~~m~r--~v~~v~~~~~l~-~a~~~m~~~~~~~lPVvd~~-~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~   76 (156)
T d2yzqa1           1 YKGVEIEPYYQR--YVSIVWEGTPLK-AALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSE   76 (156)
T ss_dssp             GGGCBSTTTSBS--CCCCEETTSBHH-HHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC------------
T ss_pred             CCCCCHHHHhcC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEeCC-CCceeEEeeeechhhhcccccccccccccchh
Confidence            357899999975  799999999998 99999999999999999865 89999999999864210               


Q ss_pred             -------------------ccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          266 -------------------EDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       266 -------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                                         ....++.++|.+++.+++++++     +.++.+.|.++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~-----l~~~~~~m~~~  128 (156)
T d2yzqa1          77 EEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMT-----VHEVALKMAKY  128 (156)
T ss_dssp             --------------------CCCBGGGTCBSSCCCBCTTSB-----HHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccc-----cHHHHHHHHHc
Confidence                               0124788898899999999999     99999999763

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.21  E-value=2.5e-12  Score=101.70  Aligned_cols=91  Identities=19%  Similarity=0.247  Sum_probs=78.9

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC----------ccccCccc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP----------EDEVPVKS  273 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~----------~~~~~v~~  273 (304)
                      .+|+++|++  +++++++++|+. ++++.+.+++++++||++++ ++++|+++.+|+++...          ....++++
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~-~a~~~m~~~~~~~ipVv~~~-~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~   77 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD   77 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH
T ss_pred             EeeHHhCcC--CCeEEcCcCcHH-HHHHHHHHcCCCeeeccccc-CccccccccccchhhhhccccccccccccCCCHHH
Confidence            479999998  688999999999 99999999999999999865 89999999999975421          12458899


Q ss_pred             ccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          274 VTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       274 ~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +|.+++.+++++++     +.++++.|+++
T Consensus        78 im~~~~~~v~~~~~-----~~~~~~~m~~~  102 (141)
T d3ddja1          78 VMVTNLVTIDELAS-----VNRAAAEMIVK  102 (141)
T ss_dssp             HSBCCCCBCCTTSB-----HHHHHHHHHHH
T ss_pred             HhCcccccccccch-----hhHHHHHHHHc
Confidence            98889999999999     99999999764

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.08  E-value=5.7e-11  Score=92.49  Aligned_cols=88  Identities=17%  Similarity=0.185  Sum_probs=77.7

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHhcC-----CceeeeeeCCCCcEEEEEEechhcccCCccccCccccccccc
Q 022005          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKG-----HSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRI  279 (304)
Q Consensus       205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~-----~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~  279 (304)
                      ||..+|++  +++++++++|+. ++++.+.+++     .+.+||++++ |+++|+++.+|++....  ..++.++|.+++
T Consensus         2 taG~iM~~--d~i~v~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~~l~~~~~--~~~v~~im~~~~   75 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVNDD--DTLIADILNERV   75 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTSCT--TSBHHHHSBSCC
T ss_pred             ChhHhCCC--CcEEECCCCcHH-HHHHHhHhhcccccceeeeEEEecC-CeEEEEEEeeccccccc--cEEhhhhccCCC
Confidence            68899986  889999999998 9999998774     6789999865 89999999999987543  458999999999


Q ss_pred             ceecCCCCCchhHHHHHHHHHhhc
Q 022005          280 PRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       280 ~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .+++++++     +.++++.|.++
T Consensus        76 ~~v~~~~~-----l~~a~~~m~~~   94 (127)
T d2ouxa2          76 ISVHVGDD-----QEDVAQTIRDY   94 (127)
T ss_dssp             CCEETTSB-----HHHHHHHHHHH
T ss_pred             ccCCCCCC-----HHHHHHHHHHh
Confidence            99999999     99999999764

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.07  E-value=6.4e-11  Score=92.70  Aligned_cols=89  Identities=17%  Similarity=0.210  Sum_probs=77.1

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc--------------ccc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE--------------DEV  269 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~--------------~~~  269 (304)
                      ++|+|+|++  ++.++++++|+. ++++.|.++|++++||++   ++++|+++..|+++....              ...
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~l~V~d---~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTT   74 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred             CEeeEEeeC--CCeEECCCCcHH-HHHHHHHHhCCeEEEEEe---cceeceeeccchhhhhccccccchhhhhccccccC
Confidence            479999997  778899999999 999999999999999985   479999999998764311              145


Q ss_pred             CcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          270 PVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       270 ~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      +++++|.+++.+++++++     +.++++.|.++
T Consensus        75 ~v~~im~~~~~~v~~~~~-----l~~a~~~m~~~  103 (135)
T d3ddja2          75 PIIDYMTPNPVTVYNTSD-----EFTAINIMVTR  103 (135)
T ss_dssp             BGGGTSEESCCCEETTSC-----HHHHHHHHHHH
T ss_pred             CHHHHhCCccceEEeccc-----cchhhhhhhhc
Confidence            789999999999999999     99999999764

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=7.2e-11  Score=96.20  Aligned_cols=94  Identities=15%  Similarity=0.198  Sum_probs=75.5

Q ss_pred             ccccccccccceE----EEEeCCCCccHHHHHHHHhcCCceeeeeeC-CCCcEEEEEEechhcccCC------c------
Q 022005          204 KTASDAMTPIAET----FAIDINAKLDKELMNLILEKGHSRVPVYYE-EPTNIIGLILVKNLLTIHP------E------  266 (304)
Q Consensus       204 ~~V~diMtpr~~v----~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~-~~~~ivGiv~~kDll~~~~------~------  266 (304)
                      ..++|||.|+...    +.+++++|++ |+.+.+.+++++++||+++ +.++++|+++.+|++....      +      
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~-~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~   81 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTS   81 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTC
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHH-HHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccch
Confidence            4689999997533    4566788998 9999999999999999953 3478999999999974210      0      


Q ss_pred             ----------------cccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          267 ----------------DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       267 ----------------~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                                      ...+++++|.+++.+++++++     +.++++.|.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~-----l~~v~~~~~~~  129 (169)
T d2j9la1          82 IIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTP-----MEIVVDIFRKL  129 (169)
T ss_dssp             EEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSB-----HHHHHHHHHHH
T ss_pred             hhhhcccchhhhhccccccchhhhccCCCEEECCCCc-----HHHHHHHHHhc
Confidence                            023578898889999999999     99999999764

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.07  E-value=9.6e-11  Score=90.92  Aligned_cols=83  Identities=14%  Similarity=0.185  Sum_probs=69.4

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC-CCcEEEEEEechhcccCCccccCcccccccccceecCCCCCchhHH
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEE-PTNIIGLILVKNLLTIHPEDEVPVKSVTIRRIPRYLISLGKCSCAL  293 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~-~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~l  293 (304)
                      +++++++++|+. ++++.|.+++++++||+|+. .++++|+++.+|+......+.......|.+++.+++++.+     +
T Consensus         6 dpvtv~~~~tv~-~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l   79 (126)
T d1zfja4           6 DPFFLTPEHKVS-EAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSEHLVTAAVGTD-----L   79 (126)
T ss_dssp             SCCCBCSSSBHH-HHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSBTTTSCCCSCCCCEETTCC-----H
T ss_pred             CceEECCCCCHH-HHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccCCceeeeeeccceeecCCCCC-----H
Confidence            677999999999 99999999999999999852 4789999999999886654443444455667889999999     9


Q ss_pred             HHHHHHHhhc
Q 022005          294 FRSLSLFSTS  303 (304)
Q Consensus       294 ~~~l~~m~~~  303 (304)
                      .++++.|.++
T Consensus        80 ~~a~~~m~~~   89 (126)
T d1zfja4          80 ETAERILHEH   89 (126)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999764

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.07  E-value=2.6e-11  Score=96.52  Aligned_cols=88  Identities=16%  Similarity=0.232  Sum_probs=77.4

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHhcC-----CceeeeeeCCCCcEEEEEEechhcccCCccccCccccccccc
Q 022005          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKG-----HSRVPVYYEEPTNIIGLILVKNLLTIHPEDEVPVKSVTIRRI  279 (304)
Q Consensus       205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~-----~sr~PV~~~~~~~ivGiv~~kDll~~~~~~~~~v~~~~~~~~  279 (304)
                      +|+++|++  +++++++++|+. ++++.+.+++     .+.+||++++ ++++|+++.+|+.....  ..++.++|.+++
T Consensus         2 taG~iM~~--~~itv~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~dl~~~~~--~~~v~~im~~~~   75 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVADP--RTRVAEIMNPKV   75 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHH-HHHHHSSSSCTTSSCSSBCEEBCTT-CBBCCBCBHHHHTTSCT--TCBSTTTSBSSC
T ss_pred             CcccccCC--CCEEECCCCcHH-HHHHHHHHhcccccceeeeEEecCC-CCEecccchhhhhhccc--ccchHHhcccCC
Confidence            68999996  889999999999 9999998775     5788999865 89999999999987543  457899999999


Q ss_pred             ceecCCCCCchhHHHHHHHHHhhc
Q 022005          280 PRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       280 ~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      .+++++++     +.++++.|+++
T Consensus        76 ~~v~~~~~-----~~~a~~~m~~~   94 (144)
T d2yvxa2          76 VYVRTDTD-----QEEVARLMADY   94 (144)
T ss_dssp             CCEESSCC-----HHHHHHHHHHS
T ss_pred             ccCCCCCh-----HHHHHHHHHHc
Confidence            99999999     99999999864

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.06  E-value=1.1e-10  Score=93.51  Aligned_cols=94  Identities=12%  Similarity=0.082  Sum_probs=77.9

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC-CCcEEEEEEechhcccCCc--------------
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE-PTNIIGLILVKNLLTIHPE--------------  266 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~-~~~ivGiv~~kDll~~~~~--------------  266 (304)
                      .+++|+|||++  +++++++++|+. ++++.+.+++++++||++++ .+.++|+++..|++.....              
T Consensus         9 ~~~~V~diM~~--~~~~v~~~~tv~-e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~   85 (160)
T d2d4za3           9 YNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEML   85 (160)
T ss_dssp             SSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred             cceEHHHhcCC--CCeEECCCCcHH-HHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhcc
Confidence            46799999996  888999999999 99999999999999999853 3689999999998652210              


Q ss_pred             ---------------cccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          267 ---------------DEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       267 ---------------~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                                     ....+.++|.+++.+++++++     +.++++.|.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~-----l~~~~~~m~~~  132 (160)
T d2d4za3          86 TLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTS-----LQKTHTLFSLL  132 (160)
T ss_dssp             BHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCB-----HHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccccceeeecccCCCEEEcCCCC-----HHHHHHHHHHc
Confidence                           012456678889999999999     99999999763

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=4.5e-10  Score=88.86  Aligned_cols=94  Identities=11%  Similarity=0.164  Sum_probs=75.5

Q ss_pred             cccccccccc-cceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc-----cc------C
Q 022005          203 EKTASDAMTP-IAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED-----EV------P  270 (304)
Q Consensus       203 ~~~V~diMtp-r~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~-----~~------~  270 (304)
                      ..+++|++.+ ..+++++++++|+. |+++.|.+++++++||++++ |+++|+++.+|+++....+     ..      .
T Consensus         8 ~~~l~~l~i~~~~~v~~v~~~~tv~-eal~~m~~~~~~~lpVvd~~-~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~   85 (145)
T d2v8qe1           8 SKSLEELQIGTYANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQ   85 (145)
T ss_dssp             GSBHHHHTCSBCSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGG
T ss_pred             hCCHHHHcCCCCCCceEEcCcCcHH-HHHHHHHHcCCCcccccccC-CceEEEEEcchhhhhhhcccccchhhhhhhccc
Confidence            4578888764 35789999999998 99999999999999999864 8999999999998754321     11      2


Q ss_pred             cccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          271 VKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       271 v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ....|..++.+++++++     +.++++.|+++
T Consensus        86 ~~~~~~~~~~~v~~~~~-----l~~~~~~m~~~  113 (145)
T d2v8qe1          86 HRSHYFEGVLKCYLHET-----LEAIINRLVEA  113 (145)
T ss_dssp             GCCSCCCSCCEECTTSB-----HHHHHHHHHHH
T ss_pred             hhhhccCCCeEECCCCc-----HHHHHHHHHHc
Confidence            33445678888999999     99999999754

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.98  E-value=2.5e-10  Score=88.83  Aligned_cols=92  Identities=8%  Similarity=0.037  Sum_probs=75.0

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCC-CCcEEEEEEechhcccCCc--cccCcccccccccc
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE-PTNIIGLILVKNLLTIHPE--DEVPVKSVTIRRIP  280 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~-~~~ivGiv~~kDll~~~~~--~~~~v~~~~~~~~~  280 (304)
                      ++|+|+|++  +++++++++|+. |+++.|.+++++++||++++ .++++|+++..|+.+...+  ........+.+++.
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~-ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~~~~~   77 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPI   77 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCC
T ss_pred             CCHHHhccC--CCEEECCCCcHH-HHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccccccccccccce
Confidence            479999975  788999999998 99999999999999999532 4789999999999875322  12223334578889


Q ss_pred             eecCCCCCchhHHHHHHHHHhhc
Q 022005          281 RYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       281 ~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ++.++++     +.++++.|.++
T Consensus        78 ~v~~~~~-----~~~a~~~m~~~   95 (131)
T d2riha1          78 TVLDTDP-----VHVAAEKMRRH   95 (131)
T ss_dssp             EEETTSB-----HHHHHHHHHHH
T ss_pred             eEeeecc-----hHHHHHHHHHC
Confidence            9999999     99999999764

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.94  E-value=2.3e-10  Score=91.61  Aligned_cols=92  Identities=11%  Similarity=0.164  Sum_probs=74.2

Q ss_pred             cccccccc-cceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCc-----cccCcccc----
Q 022005          205 TASDAMTP-IAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPE-----DEVPVKSV----  274 (304)
Q Consensus       205 ~V~diMtp-r~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~-----~~~~v~~~----  274 (304)
                      +++++|.+ +.+++++++++|+. ++++.|.+++++++||++++ ++++|+++.+|+++....     ...++.++    
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~-~a~~~m~~~~~~~lpVvd~~-~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~   79 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKR   79 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHH-HHHHHHHHTTCSEEEEECGG-GBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTS
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHH-HHHHHHHHcCcceEeeeccc-ceEEEEEEeeeeeehhccccccccccchhhheeee
Confidence            57788876 67899999999999 99999999999999999865 899999999999764321     12334433    


Q ss_pred             --cccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          275 --TIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       275 --~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                        +..++.+++++++     +.++++.|.++
T Consensus        80 ~~~~~~~~~v~~~~~-----l~~~~~~m~~~  105 (153)
T d2ooxe2          80 PANFDGVHTCRATDR-----LDGIFDAIKHS  105 (153)
T ss_dssp             CCCSSCCCEECTTCB-----HHHHHHHHHHS
T ss_pred             ecccCCCeEECCCCc-----HHHHHHhhhhc
Confidence              3456678999999     99999999754

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.90  E-value=6.7e-10  Score=87.71  Aligned_cols=90  Identities=16%  Similarity=0.226  Sum_probs=72.7

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC------------------
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP------------------  265 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~------------------  265 (304)
                      ..+.++|+.  +++++++++++. ++++.+.+++++++||+|++ ++++|+++.+|+++...                  
T Consensus         4 ~~v~~~m~~--~p~~v~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~   79 (145)
T d1o50a3           4 KDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMK   79 (145)
T ss_dssp             HHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC-------CCC
T ss_pred             eEhHHhCCC--CCEEECCcCcHH-HHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccccccchhHHHHhhhh
Confidence            456778874  778999999999 99999999999999999865 89999999999975310                  


Q ss_pred             -ccccCcccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          266 -EDEVPVKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       266 -~~~~~v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                       ....+++++ ++++.+++++++     +.++++.|+++
T Consensus        80 ~~~~~~~~~~-~~~~~~i~~~~~-----l~~a~~~m~~~  112 (145)
T d1o50a3          80 RLIAKNASEI-MLDPVYVHMDTP-----LEEALKLMIDN  112 (145)
T ss_dssp             CCSSCBHHHH-CBCCCCBCTTSB-----HHHHHHHHHHH
T ss_pred             hccccCHHHH-cCCCEEEcCCCC-----HHHHHHHHHHc
Confidence             011345555 477788999999     99999999764

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=4.9e-10  Score=88.26  Aligned_cols=94  Identities=10%  Similarity=0.102  Sum_probs=70.1

Q ss_pred             ccccccc-ccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCCcc-----cc------C
Q 022005          203 EKTASDA-MTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPED-----EV------P  270 (304)
Q Consensus       203 ~~~V~di-Mtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~~~-----~~------~  270 (304)
                      .++++|+ +.+..+++++++++|+. ++++.|.+++++++||++++ ++++|+++.+|+++...+.     ..      .
T Consensus         5 ~~~i~~l~~~~~~~v~tv~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~   82 (140)
T d2nyca1           5 KIPIGDLNIITQDNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVGEALM   82 (140)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHHHHHH
T ss_pred             cCcHHHhCCccCCCCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CeEcceehhhHHHHHHhhccccccccchhhhhh
Confidence            4567776 34567899999999998 99999999999999999865 7999999999998643211     11      1


Q ss_pred             cccccccccceecCCCCCchhHHHHHHHHHhhc
Q 022005          271 VKSVTIRRIPRYLISLGKCSCALFRSLSLFSTS  303 (304)
Q Consensus       271 v~~~~~~~~~~v~~~~~~~~~~l~~~l~~m~~~  303 (304)
                      ....+..++.+++++++     +.++++.|.++
T Consensus        83 ~~~~~~~~~~~v~~~~~-----l~~~~~~~~~~  110 (140)
T d2nyca1          83 RRSDDFEGVYTCTKNDK-----LSTIMDNIRKA  110 (140)
T ss_dssp             HCC------CEECTTSB-----HHHHHHHHHHH
T ss_pred             hhhhcccccEEECCCCc-----HHHHHHHHHhc
Confidence            12234577889999999     99999999763

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.75  E-value=3.3e-10  Score=87.14  Aligned_cols=83  Identities=8%  Similarity=0.210  Sum_probs=34.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeC--CCCcEEEEEEechhcccCCc-cccCccccc--ccccceecCCCCCc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYE--EPTNIIGLILVKNLLTIHPE-DEVPVKSVT--IRRIPRYLISLGKC  289 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~--~~~~ivGiv~~kDll~~~~~-~~~~v~~~~--~~~~~~v~~~~~~~  289 (304)
                      +++++++++|+. |+.+.|.+++++++||+++  ..++++|+++.+|+...... .+.++.++|  ..++.+++++++  
T Consensus         5 ~pvtv~~~~tl~-da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--   81 (120)
T d1jr1a4           5 DPVVLSPKDRVR-DVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGIT--   81 (120)
T ss_dssp             TTCC----CCCC---CCBC---------------CTTCCC----------------------CCSBTTTSCCEETTCC--
T ss_pred             CCEEECCcCCHH-HHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccccCceeEEEEeeccCceEECCCCC--
Confidence            567899999999 9999999999999999975  24789999999998654322 233445553  235788999999  


Q ss_pred             hhHHHHHHHHHhhc
Q 022005          290 SCALFRSLSLFSTS  303 (304)
Q Consensus       290 ~~~l~~~l~~m~~~  303 (304)
                         +.++++.|+++
T Consensus        82 ---~~~a~~~m~~~   92 (120)
T d1jr1a4          82 ---LKEANEILQRS   92 (120)
T ss_dssp             ---HHHHHHHTCSC
T ss_pred             ---HHHHHHHHHHc
Confidence               99999999764

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.59  E-value=1.1e-08  Score=79.10  Aligned_cols=60  Identities=12%  Similarity=0.326  Sum_probs=53.6

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      -.+.+|+|+|++  ++.++++++++. ++.+.|.+++..++||+|++ |+++|+|+.+|+++..
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lPVVD~~-g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          62 DDDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             cccEEhhhhccC--CCccCCCCCCHH-HHHHHHHHhCCEEEEEEeCC-CEEEEEEEHHHHHHHH
Confidence            356789999986  677899999998 99999999999999999865 8999999999998754

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.52  E-value=2.8e-08  Score=79.05  Aligned_cols=60  Identities=23%  Similarity=0.350  Sum_probs=53.5

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       200 ~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      ...+.+|+++|++  +++++++++++. ++.+.|.+++++++||+|++ |+++|+++.+|++++
T Consensus        95 ~~~~~~v~~~m~~--~~~tv~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          95 QLPNKPVAEIMTR--DVIVATPHMTVH-EVALKMAKYSIEQLPVIRGE-GDLIGLIRDFDLLKV  154 (156)
T ss_dssp             --CCCBGGGTCBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEETT-TEEEEEEEHHHHGGG
T ss_pred             cccCCEeehhccc--CceEECcccccH-HHHHHHHHcCeeEEEEEeCC-CEEEEEEEHHHHHHH
Confidence            4567899999986  678899999998 99999999999999999865 899999999999875

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.51  E-value=2.7e-08  Score=77.22  Aligned_cols=60  Identities=15%  Similarity=0.285  Sum_probs=53.9

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~  265 (304)
                      .+.+++++|++  ++.++++++++. ++++.|.+++.+++||+|++ |+++|+|+.+|+++...
T Consensus        72 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~i~~lpVvd~~-g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          72 STTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGG
T ss_pred             ccCCHHHHhCC--ccceEEeccccc-hhhhhhhhcceeEEEEEeCC-CEEEEEEEHHHHHHHHH
Confidence            45689999986  778999999998 99999999999999999865 89999999999998654

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.50  E-value=1.7e-08  Score=77.42  Aligned_cols=60  Identities=23%  Similarity=0.418  Sum_probs=53.0

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       200 ~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      +....+++++|++  +++++++++++. ++++.|.+++++++||+++  ++++|+|+.+|+++..
T Consensus        63 ~~~~~~v~~im~~--~~~~v~~~~~~~-~~~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          63 DPNTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHL  122 (123)
T ss_dssp             CTTTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTC
T ss_pred             CcccceEEEEeec--cceeeeecchHH-HHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHhhC
Confidence            4456688999985  778999999998 9999999999999999984  7999999999998764

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.46  E-value=8.8e-08  Score=75.23  Aligned_cols=61  Identities=13%  Similarity=0.209  Sum_probs=54.7

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccCC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~~  265 (304)
                      ..+.+++++|++  +++++++++++. ++.+.|.+++.+++||++++ |+++|+++.+|+++...
T Consensus        66 ~~~~~v~~im~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          66 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTSC
T ss_pred             cccccccccccc--ccccccchhhHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHHHHh
Confidence            456789999985  788999999998 99999999999999999865 89999999999998764

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.39  E-value=9.8e-08  Score=75.21  Aligned_cols=60  Identities=18%  Similarity=0.409  Sum_probs=53.8

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ..+.+++++|++  +++++++++++. ++++.|.++++.++||++++ |+++|+|+.+|+++..
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lPVVd~~-g~lvGiIt~~Dil~~l  121 (144)
T d2yvxa2          62 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVL  121 (144)
T ss_dssp             CTTCBSTTTSBS--SCCCEESSCCHH-HHHHHHHHSCCSEEEEECSS-CBEEEEEEHHHHHHHH
T ss_pred             ccccchHHhccc--CCccCCCCChHH-HHHHHHHHcCCCEEEEEeEC-CEEEEEEEHHHHHHHH
Confidence            356789999985  778899999998 99999999999999999865 8999999999998754

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.39  E-value=3.2e-08  Score=75.62  Aligned_cols=59  Identities=14%  Similarity=0.264  Sum_probs=46.1

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      +.++.++|+.+.+++++++++++. ++.+.|.+++.+++||++++ |+++|+|+.+|+++.
T Consensus        60 ~~~~~~~~~~~~~~~~v~~~~~~~-~a~~~m~~~~i~~lpVVd~~-~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          60 DRFLEEIMTKREDLVVAPAGITLK-EANEILQRSKKGKLPIVNEN-DELVAIIARTDLKKN  118 (120)
T ss_dssp             ------CCSBTTTSCCEETTCCHH-HHHHHTCSCC---CEEEETT-TEEEEEECHHHHHHH
T ss_pred             CceeEEEEeeccCceEECCCCCHH-HHHHHHHHcCccEEEEEcCC-CEEEEEEEHHHhhhc
Confidence            567889998888899999999998 99999999999999999865 899999999999863

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.31  E-value=2.3e-07  Score=71.30  Aligned_cols=57  Identities=25%  Similarity=0.414  Sum_probs=51.4

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      .+.+++++|++  ++.++++++++. ++.+.|.+++.+++||+++  |+++|+|+.+|++++
T Consensus        68 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          68 KDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLDD--GKVIGLLSIGDLVKD  124 (127)
T ss_dssp             GGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHH
T ss_pred             cceeEeeeccc--eeEEeccCccHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHH
Confidence            45789999985  778999999998 9999999999999999973  799999999999864

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.30  E-value=2e-07  Score=70.86  Aligned_cols=59  Identities=22%  Similarity=0.300  Sum_probs=52.1

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       200 ~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      .+.+.+++|+|++  ++.++++++++. ++++.|.+++..++||.++  |+++|+++.+|++++
T Consensus        60 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~V~~~--~~l~Givt~~Dil~A  118 (120)
T d1pbja3          60 DLAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILRA  118 (120)
T ss_dssp             CTTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHH
T ss_pred             cccceeEeeeccc--ccccccchhHHH-HHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHHHhc
Confidence            3456789999985  778999999998 9999999999999999863  799999999999864

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.30  E-value=1.8e-07  Score=71.79  Aligned_cols=58  Identities=19%  Similarity=0.326  Sum_probs=51.9

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      +.+++++|.+  ++.++++++++. ++.+.|.+++.+++||++++ |+++|+++..|+++..
T Consensus        66 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~lvGiit~~Dll~~i  123 (127)
T d2ef7a1          66 ETKAEEFMTA--SLITIREDSPIT-GALALMRQFNIRHLPVVDDK-GNLKGIISIRDITRAI  123 (127)
T ss_dssp             TCBGGGTSEE--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             cchhhhhhhh--hccccccccchh-HHHHHHHHcCceEEEEEeCC-CeEEEEEEHHHHHHHH
Confidence            4578999985  778899999999 99999999999999999864 8999999999998754

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.29  E-value=2.7e-07  Score=70.45  Aligned_cols=60  Identities=18%  Similarity=0.226  Sum_probs=48.5

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ..+.+++++|.+  +++++++++++. ++.+.+.+++.+++||+|++ |+++|+|+.+|++++.
T Consensus        57 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~-~~liGiit~~dil~~~  116 (122)
T d2yzqa2          57 PDEEQLAMLVKR--DVPVVKENDTLK-KAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRY  116 (122)
T ss_dssp             -------CCCBS--CCCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHT
T ss_pred             hcccchhhcccc--ceeecchhhHHH-HHHHHHHHcCcEEEEEEeCC-CEEEEEEEHHHHHHHH
Confidence            345679999986  678999999998 99999999999999999865 8999999999998754

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.25  E-value=1.8e-07  Score=72.91  Aligned_cols=59  Identities=20%  Similarity=0.263  Sum_probs=53.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++++|++  +++++++++++. ++++.+.+++.+++||+|++ |+++|+|+.+|+++..
T Consensus        71 ~~~~v~~im~~--~~~~v~~~~~~~-~~~~~m~~~~~~~l~Vvd~~-~~~iGiIt~~Dil~~l  129 (141)
T d3ddja1          71 YGKVVKDVMVT--NLVTIDELASVN-RAAAEMIVKRIGSLLILNKD-NTIRGIITERDLLIAL  129 (141)
T ss_dssp             HTCBHHHHSBC--CCCBCCTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             cCCCHHHHhCc--ccccccccchhh-HHHHHHHHcCCCEEEEEccC-CEEEEEEEHHHHHHHH
Confidence            45689999986  778899999998 99999999999999999865 8999999999998754

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.23  E-value=2.8e-07  Score=71.87  Aligned_cols=59  Identities=19%  Similarity=0.242  Sum_probs=52.5

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ..+.+++++|++  ++.++++++++. ++.+.|.+++.+++||+|+  |+++|+|+.+|+++..
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~~  130 (139)
T d2o16a3          72 AFETPLFEVMHT--DVTSVAPQAGLK-ESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIA  130 (139)
T ss_dssp             -CCCBHHHHSCS--CEEEBCTTSBHH-HHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHH
T ss_pred             ccccchhHhhcc--ccccccccchHH-HHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            456789999985  888999999998 9999999999999999984  7999999999998754

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.20  E-value=8.4e-07  Score=68.45  Aligned_cols=58  Identities=19%  Similarity=0.323  Sum_probs=51.6

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.+++++|++  ++.++++++++. ++.+.|.+++.+++||.++  |+++|+|+.+|++++.
T Consensus        68 ~~~~v~~im~~--~~~~v~~~~~~~-~~~~~m~~~~~~~l~V~~~--~~~vGivt~~Dil~a~  125 (132)
T d2yzia1          68 YDIPVERIMTR--NLITANVNTPLG-EVLRKMAEHRIKHILIEEE--GKIVGIFTLSDLLEAS  125 (132)
T ss_dssp             TTSBGGGTCBC--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             cceeEeecccc--cccccCcchHHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            35689999986  778999999998 9999999999999999763  7999999999999864

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.19  E-value=4e-07  Score=72.02  Aligned_cols=66  Identities=11%  Similarity=0.106  Sum_probs=55.7

Q ss_pred             HHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          194 IIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       194 ~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ............++++|.+  .++++++++++. ++.+.|.+++.+++||.++  |+++|+|+.+|++++.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~--~~~tv~~~~~l~-~~~~~m~~~~v~~l~V~d~--g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3          93 WEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQ-KTHTLFSLLGLDRAYVTSM--GKLVGVVALAEIQAAI  158 (160)
T ss_dssp             HHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             hhhhhcccccceeeecccC--CCEEEcCCCCHH-HHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHHHHHh
Confidence            3344455667778999986  677899999998 9999999999999999873  7999999999998753

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=5.4e-07  Score=72.49  Aligned_cols=60  Identities=12%  Similarity=0.199  Sum_probs=52.9

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       200 ~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .....+++++|+|  +++++++++++. ++.+.+.+++.+++||.++  |+++|+|+.+|++++.
T Consensus        96 ~~~~~~v~~im~~--~~~tv~~~~~l~-~v~~~~~~~~~~~l~V~d~--g~lvGiIt~~Dil~~l  155 (169)
T d2j9la1          96 TPPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHI  155 (169)
T ss_dssp             CCCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             cccccchhhhccC--CCEEECCCCcHH-HHHHHHHhcCceEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            3456789999997  678999999998 9999999999999999874  7999999999998854

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.10  E-value=1.1e-06  Score=67.11  Aligned_cols=57  Identities=18%  Similarity=0.332  Sum_probs=47.8

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ...+.|.+ .+++++++++++. ++.+.+.+++.+++||++++ |+++|+|+.+|++++.
T Consensus        60 ~~~~~~~~-~~~~~~~~~~~l~-~a~~~m~~~~~~~lpVVd~~-g~lvGiiT~~Dil~~~  116 (126)
T d1zfja4          60 PISEHMTS-EHLVTAAVGTDLE-TAERILHEHRIEKLPLVDNS-GRLSGLITIKDIEKVI  116 (126)
T ss_dssp             BTTTSCCC-SCCCCEETTCCHH-HHHHHHHHTTCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             ceeeeeec-cceeecCCCCCHH-HHHHHHHhcCCcEEEEEcCC-CeEEEEEEHHHHHHHh
Confidence            34445543 3667899999998 99999999999999999864 8999999999998754

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.10  E-value=8.7e-07  Score=69.15  Aligned_cols=91  Identities=21%  Similarity=0.297  Sum_probs=65.6

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCChhHHHHHhhhhccccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeee
Q 022005          164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPV  243 (304)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~e~~~i~~~l~l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV  243 (304)
                      .+|..++.........     +... .........-.+...+++++|.   +++++++++++. ++++.|.+++.+++||
T Consensus        50 iis~~Dl~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~l~-~a~~~m~~~~i~~lpV  119 (145)
T d1o50a3          50 MIPVMHLLKVSGFHFF-----GFIP-KEELIRSSMKRLIAKNASEIML---DPVYVHMDTPLE-EALKLMIDNNIQEMPV  119 (145)
T ss_dssp             EEEHHHHHHHHHHHHH-----CCCC--------CCCCCSSCBHHHHCB---CCCCBCTTSBHH-HHHHHHHHHTCSEEEE
T ss_pred             eeccchhhhhhhcccc-----cccc-hhHHHHhhhhhccccCHHHHcC---CCEEEcCCCCHH-HHHHHHHHcCceEEEE
Confidence            4678888776653211     1111 2222334455677788999995   457899999998 9999999999999999


Q ss_pred             eeCCCCcEEEEEEechhcccCC
Q 022005          244 YYEEPTNIIGLILVKNLLTIHP  265 (304)
Q Consensus       244 ~~~~~~~ivGiv~~kDll~~~~  265 (304)
                      ++++ |+++|+|+.+|++++..
T Consensus       120 Vd~~-g~i~Gvit~~dil~~l~  140 (145)
T d1o50a3         120 VDEK-GEIVGDLNSLEILLALW  140 (145)
T ss_dssp             ECTT-SCEEEEEEHHHHHHHHH
T ss_pred             EeCC-CeEEEEEEHHHHHHHHH
Confidence            9864 89999999999998653

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.07  E-value=1.2e-06  Score=66.54  Aligned_cols=58  Identities=17%  Similarity=0.313  Sum_probs=51.9

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       203 ~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      +.++.++|+.  ++.++++++++. ++++.+.+++...+||++++ |+++|+|+.+|++++.
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvde~-g~~~Gvit~~dil~~l  116 (121)
T d1vr9a3          59 DSSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQEPYLPVVDEE-MRLKGAVSLHDFLEAL  116 (121)
T ss_dssp             TSBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCCCSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             cccccccccC--ccEEECCCCCHH-HHHHHHHhcCceeeeeECCC-CeEEEEEEHHHHHHHH
Confidence            5689999985  666899999998 99999999999999999875 8999999999998754

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.05  E-value=1.8e-06  Score=68.15  Aligned_cols=61  Identities=15%  Similarity=0.231  Sum_probs=50.7

Q ss_pred             cccccccccccc----ceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          202 TEKTASDAMTPI----AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       202 ~~~~V~diMtpr----~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      .+.++.++|+.+    .+++++++++++. ++++.|.+++.+++||+|++ |+++|+|+.+|++++.
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~lvGivT~~Dil~~~  132 (153)
T d2ooxe2          68 LDLSVGEALLKRPANFDGVHTCRATDRLD-GIFDAIKHSRVHRLFVVDEN-LKLEGILSLADILNYI  132 (153)
T ss_dssp             GGSBHHHHHHTSCCCSSCCCEECTTCBHH-HHHHHHHHSCCSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             cccchhhheeeeecccCCCeEECCCCcHH-HHHHhhhhceeeEEEEEcCC-CEEEEEEEHHHHHHHH
Confidence            345667776543    3567899999998 99999999999999999864 8999999999998753

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.96  E-value=1.2e-06  Score=69.44  Aligned_cols=58  Identities=19%  Similarity=0.204  Sum_probs=50.9

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       204 ~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ..++++|++  +++++++++++. ++++.|.+++.+|+||++++.|+++|+|+.+|+++..
T Consensus        96 ~~~~~~~~~--~~~~v~~~~~l~-~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l  153 (159)
T d2v8qe2          96 EVYLQDSFK--PLVCISPNASLF-DAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFL  153 (159)
T ss_dssp             HHHSSSSCC--CCCCBCTTSBHH-HHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHH
T ss_pred             ceeeeeecc--ceEEECCCCcHH-HHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHH
Confidence            346788875  778999999998 9999999999999999986668999999999998754

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=97.91  E-value=1.8e-06  Score=66.46  Aligned_cols=58  Identities=19%  Similarity=0.251  Sum_probs=49.1

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       201 l~~~~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ..+.+|+++|++  ++.++++++++. ++.+.+.+++  .+||++++ |+++|+|+.+|++++.
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~--~l~Vvd~~-~~~~Givt~~dil~~l  128 (132)
T d1yava3          71 LDQITVEEVMLT--DIPRLHINDPIM-KGFGMVINNG--FVCVENDE-QVFEGIFTRRVVLKEL  128 (132)
T ss_dssp             TTTSBHHHHSBC--SCCEEETTSBHH-HHHHHTTTCS--EEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             cccccccccccc--cccccccchhHH-HHHHHHHhCC--EEEEEccC-CEEEEEEEHHHHHHHH
Confidence            456789999985  778999999998 9999987654  49999865 8999999999998753

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.89  E-value=7e-06  Score=62.70  Aligned_cols=47  Identities=9%  Similarity=0.136  Sum_probs=42.9

Q ss_pred             eEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       215 ~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      +..++.+++++. ++++.|.+++.+++||++++ |+++|+|+..|+++.
T Consensus        75 ~~~~v~~~~~~~-~a~~~m~~~~i~~lpVvd~~-g~l~Giit~~Dll~~  121 (131)
T d2riha1          75 SPITVLDTDPVH-VAAEKMRRHNIRHVVVVNKN-GELVGVLSIRDLCFE  121 (131)
T ss_dssp             CCCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHSC
T ss_pred             cceeEeeecchH-HHHHHHHHCCeEEEEEEcCC-CeEEEEEEHHHHHHH
Confidence            556899999998 99999999999999999865 899999999999875

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=5.4e-06  Score=64.51  Aligned_cols=56  Identities=14%  Similarity=0.245  Sum_probs=47.4

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhcccC
Q 022005          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTIH  264 (304)
Q Consensus       205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~~  264 (304)
                      ++.+.|.+  +++++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++++.
T Consensus        85 ~~~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~l~GiVt~~dii~~l  140 (145)
T d2v8qe1          85 QHRSHYFE--GVLKCYLHETLE-AIINRLVEAEVHRLVVVDEH-DVVKGIVSLSDILQAL  140 (145)
T ss_dssp             GGCCSCCC--SCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             chhhhccC--CCeEECCCCcHH-HHHHHHHHcCceEEEEEccC-CEEEEEEEHHHHHHHH
Confidence            34455554  677899999998 99999999999999999764 8999999999998753

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=1.7e-05  Score=61.25  Aligned_cols=48  Identities=19%  Similarity=0.315  Sum_probs=41.9

Q ss_pred             ceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCCCcEEEEEEechhccc
Q 022005          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVKNLLTI  263 (304)
Q Consensus       214 ~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~~~ivGiv~~kDll~~  263 (304)
                      .+.+++++++++. ++++.+.+++++++||+|++ |+++|+|+.+|++++
T Consensus        89 ~~~~~v~~~~~l~-~~~~~~~~~~~~~l~VVd~~-~~l~GiIt~~Dii~~  136 (140)
T d2nyca1          89 EGVYTCTKNDKLS-TIMDNIRKARVHRFFVVDDV-GRLVGVLTLSDILKY  136 (140)
T ss_dssp             ---CEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHH
T ss_pred             cccEEECCCCcHH-HHHHHHHhcCeeEEEEEeCC-CeEEEEEEHHHHHHH
Confidence            3667899999998 99999999999999999865 899999999999864

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.52  E-value=2e-05  Score=63.32  Aligned_cols=57  Identities=16%  Similarity=0.201  Sum_probs=48.6

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHhcCCceeeeeeCCC----CcEEEEEEechhcccC
Q 022005          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP----TNIIGLILVKNLLTIH  264 (304)
Q Consensus       205 ~V~diMtpr~~v~~l~~~~t~~~e~~~~~~~~~~sr~PV~~~~~----~~ivGiv~~kDll~~~  264 (304)
                      .+.++|.+  +++++++++++. ++++.|.+++++|+||+|++.    ++++|+++.+||++..
T Consensus       108 ~~~~~~~~--~~i~v~~~~sl~-~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l  168 (179)
T d2ooxe1         108 RKIGAIPP--ETIYVHPMHSLM-DACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFI  168 (179)
T ss_dssp             HHTTCSCS--SCCCBCTTSBHH-HHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHH
T ss_pred             eeeeeccc--CceEECCCCcHH-HHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHH
Confidence            45567764  778999999998 999999999999999998542    3699999999999865