Citrus Sinensis ID: 022006

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----

MTILIDQPHFGVEVQEKKVPIDEKELSLDGGFLVPQTNSFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSLIEKYFPAKLKW

cEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccEEEccEEccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHccccccc

cEEEEEcccccHHHcccccccccHHcEccccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccEEEEcccccccccEEEcccccccccccccEEcHHHHccccccccccccccccccccccccccEEEEcccHHHHHHHHHcccccccHHHHHHHHHcccccccccccHHHHccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccc

mtilidqphfgvevqekkvpidekelsldggflvpqtnsfghtfrdydaegerqegVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNdvvdesdpdldepqIEHLLQTAEAIrkdypdedwlHLTGLIHDLGkvlnlpsfgglpqwavvgdtfpvgcafdesivhhkyfkenpdysnpafnteygvysegcgldnvmmswgHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETfskydlyskskvridvekVKPYYLSLIEKYFPAKLKW

mtilidqphfgvevqEKKVPIDEKELSLDGGFLVPQTNSFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSkydlyskskvridvekvkpyYLSLiekyfpaklkw

*********FGV************ELSLDGGFLVPQTNSFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVD**********IEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSLIEKYFPA****

*TIL***P******************SLDGGFLVPQTNSFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSLIEKYFPAKLKW

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		304	2.2.26 [Sep-21-2011]
Q8L799		311	Inositol oxygenase 1 OS=A	yes	no	1.0	0.977	0.794	1e-145
Q5Z8T3		308	Probable inositol oxygena	yes	no	0.996	0.983	0.750	1e-138
O82200		317	Inositol oxygenase 2 OS=A	no	no	0.996	0.955	0.729	1e-133
Q8H1S0		317	Inositol oxygenase 4 OS=A	no	no	1.0	0.958	0.716	1e-133
Q9FJU4		314	Inositol oxygenase 5 OS=A	no	no	0.990	0.958	0.690	1e-127
Q54GH4		292	Inositol oxygenase OS=Dic	yes	no	0.894	0.931	0.519	2e-79
Q4V8T0		278	Inositol oxygenase OS=Dan	yes	no	0.845	0.924	0.503	5e-71
Q9QXN5		285	Inositol oxygenase OS=Mus	yes	no	0.875	0.933	0.476	7e-71
A7MBE4		285	Inositol oxygenase OS=Bos	yes	no	0.875	0.933	0.479	3e-70
Q5REY9		285	Inositol oxygenase OS=Pon	yes	no	0.848	0.905	0.486	6e-70

>sp\|Q8L799\|MIOX1_ARATH Inositol oxygenase 1 OS=Arabidopsis thaliana GN=MIOX1 PE=2 SV=1	Back alignment and function desciption

 Score =  513 bits (1322), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/311 (79%), Positives = 269/311 (86%), Gaps = 7/311 (2%)

Query: 1   MTILID----QPHFGVEVQEKKV---PIDEKELSLDGGFLVPQTNSFGHTFRDYDAEGER 53
           MTILID    Q   G E+ EK       +E EL LD GF  P TNSFG TFRDYDAE ER
Sbjct: 1   MTILIDRHSDQNDAGDEIVEKNQGNGKEEETELVLDAGFEAPHTNSFGRTFRDYDAESER 60

Query: 54  QEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQI 113
           + GVE FYR+NHI QT DFV+KMREEY KLNR EMSIWECCELLN+ +DESDPDLDEPQI
Sbjct: 61  RRGVEEFYRVNHIGQTVDFVRKMREEYEKLNRTEMSIWECCELLNEFIDESDPDLDEPQI 120

Query: 114 EHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDES 173
           EHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVL   SFG LPQWAVVGDTFPVGCAFDES
Sbjct: 121 EHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLLHSSFGELPQWAVVGDTFPVGCAFDES 180

Query: 174 IVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAAL 233
           IVHHKYFKENPDY NP++N++YG+Y+EGCGLDNV+MSWGHDDYMYLVAKEN+TTLPSA L
Sbjct: 181 IVHHKYFKENPDYDNPSYNSKYGIYTEGCGLDNVLMSWGHDDYMYLVAKENQTTLPSAGL 240

Query: 234 FIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSL 293
           FIIRYHSFYALHKSEAYKHLMN ED EN+KWL+ F+KYDLYSKSKVR++VE+VKPYYLSL
Sbjct: 241 FIIRYHSFYALHKSEAYKHLMNNEDRENMKWLKVFNKYDLYSKSKVRVNVEEVKPYYLSL 300

Query: 294 IEKYFPAKLKW 304
             KYFP+KLKW
Sbjct: 301 TNKYFPSKLKW 311

Involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. May be also involved in plant ascorbate biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 3EC: .EC: 9EC: 9EC: .EC: 1

>sp\|Q5Z8T3\|MIOX_ORYSJ Probable inositol oxygenase OS=Oryza sativa subsp. japonica GN=Os06g0561000 PE=2 SV=1	Back alignment and function description

>sp\|O82200\|MIOX2_ARATH Inositol oxygenase 2 OS=Arabidopsis thaliana GN=MIOX2 PE=2 SV=2	Back alignment and function description

>sp\|Q8H1S0\|MIOX4_ARATH Inositol oxygenase 4 OS=Arabidopsis thaliana GN=MIOX4 PE=2 SV=1	Back alignment and function description

>sp\|Q9FJU4\|MIOX5_ARATH Inositol oxygenase 5 OS=Arabidopsis thaliana GN=MIOX5 PE=2 SV=1	Back alignment and function description

>sp\|Q54GH4\|MIOX_DICDI Inositol oxygenase OS=Dictyostelium discoideum GN=miox PE=3 SV=1	Back alignment and function description

>sp\|Q4V8T0\|MIOX_DANRE Inositol oxygenase OS=Danio rerio GN=miox PE=2 SV=1	Back alignment and function description

>sp\|Q9QXN5\|MIOX_MOUSE Inositol oxygenase OS=Mus musculus GN=Miox PE=1 SV=2	Back alignment and function description

>sp\|A7MBE4\|MIOX_BOVIN Inositol oxygenase OS=Bos taurus GN=MIOX PE=2 SV=1	Back alignment and function description

>sp\|Q5REY9\|MIOX_PONAB Inositol oxygenase OS=Pongo abelii GN=MIOX PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		304
388493838		305	unknown [Lotus japonicus]	1.0	0.996	0.868	1e-156
255635830		335	unknown [Glycine max]	1.0	0.907	0.856	1e-154
356522820		306	PREDICTED: inositol oxygenase 1-like [Gl	1.0	0.993	0.859	1e-154
388522589		305	unknown [Medicago truncatula]	1.0	0.996	0.855	1e-154
225442398		304	PREDICTED: inositol oxygenase 1 [Vitis v	1.0	1.0	0.851	1e-153
356526059		306	PREDICTED: inositol oxygenase 1-like [Gl	1.0	0.993	0.852	1e-153
350538319		317	myo-inositol oxygenase [Solanum lycopers	1.0	0.958	0.782	1e-147
225445025		309	PREDICTED: probable inositol oxygenase [	0.993	0.977	0.807	1e-144
224099667		283	predicted protein [Populus trichocarpa]	0.927	0.996	0.865	1e-144
297849866		311	myo-inisitol oxygenase [Arabidopsis lyra	1.0	0.977	0.803	1e-143

>gi\|388493838\|gb\|AFK34985.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/305 (86%), Positives = 285/305 (93%), Gaps = 1/305 (0%)

Query: 1   MTILIDQP-HFGVEVQEKKVPIDEKELSLDGGFLVPQTNSFGHTFRDYDAEGERQEGVEN 59
           MTI+IDQP HFG +V+ K VPIDEKEL LDGGF++P TNSFGHTFRDY+AE ERQEGVEN
Sbjct: 1   MTIIIDQPDHFGSDVEGKTVPIDEKELVLDGGFVMPHTNSFGHTFRDYNAESERQEGVEN 60

Query: 60  FYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQT 119
           FYR NHI Q+ DFVKKMREEYGKLNRVEMS+WECCELLN+VVDESDPDLDEPQIEHLLQT
Sbjct: 61  FYRKNHIYQSVDFVKKMREEYGKLNRVEMSMWECCELLNEVVDESDPDLDEPQIEHLLQT 120

Query: 120 AEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKY 179
           AEAIRKDYP+EDWLHLTGLIHDLGKVL LP FGGLPQWAVVGDTFPVGC FDESI+HHK+
Sbjct: 121 AEAIRKDYPNEDWLHLTGLIHDLGKVLLLPVFGGLPQWAVVGDTFPVGCRFDESIIHHKH 180

Query: 180 FKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYH 239
           FKENPDY+NPA+NT YG+YSE CGL+NV+MSWGHDDYMYLVAKENKTTLPSAALFIIRYH
Sbjct: 181 FKENPDYNNPAYNTRYGMYSEKCGLNNVLMSWGHDDYMYLVAKENKTTLPSAALFIIRYH 240

Query: 240 SFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSLIEKYFP 299
           SFYALH+  AYKHLMNEED ENL+WL  F+KYDLYSKSKVRIDVEKVKPYYLSLIEKYFP
Sbjct: 241 SFYALHREGAYKHLMNEEDFENLEWLHIFNKYDLYSKSKVRIDVEKVKPYYLSLIEKYFP 300

Query: 300 AKLKW 304
           AKLKW
Sbjct: 301 AKLKW 305

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255635830\|gb\|ACU18263.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|356522820\|ref\|XP_003530041.1\| PREDICTED: inositol oxygenase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|388522589\|gb\|AFK49356.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|225442398\|ref\|XP_002282395.1\| PREDICTED: inositol oxygenase 1 [Vitis vinifera] gi\|297743146\|emb\|CBI36013.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356526059\|ref\|XP_003531637.1\| PREDICTED: inositol oxygenase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|350538319\|ref\|NP_001234593.1\| myo-inositol oxygenase [Solanum lycopersicum] gi\|240248438\|gb\|ACS45396.1\| myo-inositol oxygenase [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|225445025\|ref\|XP_002283119.1\| PREDICTED: probable inositol oxygenase [Vitis vinifera] gi\|297738724\|emb\|CBI27969.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224099667\|ref\|XP_002311571.1\| predicted protein [Populus trichocarpa] gi\|222851391\|gb\|EEE88938.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297849866\|ref\|XP_002892814.1\| myo-inisitol oxygenase [Arabidopsis lyrata subsp. lyrata] gi\|297338656\|gb\|EFH69073.1\| myo-inisitol oxygenase [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		304
TAIR\|locus:2012572		311	MIOX1 "myo-inositol oxygenase	1.0	0.977	0.794	2e-136
TAIR\|locus:2052015		317	MIOX2 "myo-inositol oxygenase	0.990	0.949	0.734	8.7e-127
TAIR\|locus:2165061		314	MIOX5 "myo-inositol oxygenase	0.947	0.917	0.734	2e-120
DICTYBASE\|DDB_G0290161		292	miox "inositol oxygenase" [Dic	0.848	0.883	0.537	3.8e-78
FB\|FBgn0036262		292	CG6910 [Drosophila melanogaste	0.848	0.883	0.541	1.5e-74
ZFIN\|ZDB-GENE-050913-113		283	miox "myo-inositol oxygenase"	0.845	0.908	0.503	3.7e-71
ASPGD\|ASPL0000003632		312	AN5985 [Emericella nidulans (t	0.835	0.814	0.536	6.1e-71
MGI\|MGI:1891725		285	Miox "myo-inositol oxygenase"	0.875	0.933	0.476	8e-69
UNIPROTKB\|F1RYH8		282	MIOX "Inositol oxygenase" [Sus	0.848	0.914	0.490	5.6e-68
UNIPROTKB\|E2QTD8		285	MIOX "Uncharacterized protein"	0.848	0.905	0.494	9.2e-68

TAIR\|locus:2012572 MIOX1 "myo-inositol oxygenase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1336 (475.4 bits), Expect = 2.0e-136, P = 2.0e-136
 Identities = 247/311 (79%), Positives = 269/311 (86%)

Query:     1 MTILID----QPHFGVEVQEKKV---PIDEKELSLDGGFLVPQTNSFGHTFRDYDAEGER 53
             MTILID    Q   G E+ EK       +E EL LD GF  P TNSFG TFRDYDAE ER
Sbjct:     1 MTILIDRHSDQNDAGDEIVEKNQGNGKEEETELVLDAGFEAPHTNSFGRTFRDYDAESER 60

Query:    54 QEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQI 113
             + GVE FYR+NHI QT DFV+KMREEY KLNR EMSIWECCELLN+ +DESDPDLDEPQI
Sbjct:    61 RRGVEEFYRVNHIGQTVDFVRKMREEYEKLNRTEMSIWECCELLNEFIDESDPDLDEPQI 120

Query:   114 EHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDES 173
             EHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVL   SFG LPQWAVVGDTFPVGCAFDES
Sbjct:   121 EHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLLHSSFGELPQWAVVGDTFPVGCAFDES 180

Query:   174 IVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAAL 233
             IVHHKYFKENPDY NP++N++YG+Y+EGCGLDNV+MSWGHDDYMYLVAKEN+TTLPSA L
Sbjct:   181 IVHHKYFKENPDYDNPSYNSKYGIYTEGCGLDNVLMSWGHDDYMYLVAKENQTTLPSAGL 240

Query:   234 FIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSL 293
             FIIRYHSFYALHKSEAYKHLMN ED EN+KWL+ F+KYDLYSKSKVR++VE+VKPYYLSL
Sbjct:   241 FIIRYHSFYALHKSEAYKHLMNNEDRENMKWLKVFNKYDLYSKSKVRVNVEEVKPYYLSL 300

Query:   294 IEKYFPAKLKW 304
               KYFP+KLKW
Sbjct:   301 TNKYFPSKLKW 311

GO:0005506 "iron ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0019310 "inositol catabolic process" evidence=IEA

GO:0050113 "inositol oxygenase activity" evidence=IEA;IMP

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006949 "syncytium formation" evidence=IGI

TAIR\|locus:2052015 MIOX2 "myo-inositol oxygenase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2165061 MIOX5 "myo-inositol oxygenase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0290161 miox "inositol oxygenase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0036262 CG6910 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050913-113 miox "myo-inositol oxygenase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000003632 AN5985 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

MGI\|MGI:1891725 Miox "myo-inositol oxygenase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RYH8 MIOX "Inositol oxygenase" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QTD8 MIOX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9QXN5	MIOX_MOUSE	1, ., 1, 3, ., 9, 9, ., 1	0.4760	0.875	0.9333	yes	no
Q9UGB7	MIOX_HUMAN	1, ., 1, 3, ., 9, 9, ., 1	0.4760	0.875	0.9333	yes	no
Q4V8T0	MIOX_DANRE	1, ., 1, 3, ., 9, 9, ., 1	0.5038	0.8453	0.9244	yes	no
Q8L799	MIOX1_ARATH	1, ., 1, 3, ., 9, 9, ., 1	0.7942	1.0	0.9774	yes	no
Q9QXN4	MIOX_RAT	1, ., 1, 3, ., 9, 9, ., 1	0.4612	0.875	0.9333	yes	no
Q5Z8T3	MIOX_ORYSJ	1, ., 1, 3, ., 9, 9, ., 1	0.7508	0.9967	0.9837	yes	no
A7MBE4	MIOX_BOVIN	1, ., 1, 3, ., 9, 9, ., 1	0.4797	0.875	0.9333	yes	no
Q8H1S0	MIOX4_ARATH	1, ., 1, 3, ., 9, 9, ., 1	0.7160	1.0	0.9589	no	no
Q8WN98	MIOX_PIG	1, ., 1, 3, ., 9, 9, ., 1	0.4866	0.8486	0.9148	yes	no
Q54GH4	MIOX_DICDI	1, ., 1, 3, ., 9, 9, ., 1	0.5195	0.8947	0.9315	yes	no
O82200	MIOX2_ARATH	1, ., 1, 3, ., 9, 9, ., 1	0.7295	0.9967	0.9558	no	no
Q5REY9	MIOX_PONAB	1, ., 1, 3, ., 9, 9, ., 1	0.4866	0.8486	0.9052	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.13.99	0.983
3rd Layer	1.13.99.1	0.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		304
pfam05153		255	pfam05153, DUF706, Family of unknown function (DUF	1e-169

>gnl\|CDD\|191210 pfam05153, DUF706, Family of unknown function (DUF706)	Back alignment and domain information

 Score =  469 bits (1208), Expect = e-169
 Identities = 167/257 (64%), Positives = 194/257 (75%), Gaps = 2/257 (0%)

Query: 48  DAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPD 107
             E    + V  FYR  H  QT DFVKK R E+ K  R +M+IWE  ELLN +VDESDPD
Sbjct: 1   YEEAPLCDRVREFYREQHTKQTVDFVKKARAEFLKFTRAKMTIWEALELLNTLVDESDPD 60

Query: 108 LDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVG 167
            D PQI+HLLQTAEAIR+D+PD DW+HLTGLIHDLGKVL    FGG PQWAVVGDTFPVG
Sbjct: 61  TDLPQIQHLLQTAEAIRRDHPDPDWMHLTGLIHDLGKVLAF--FGGEPQWAVVGDTFPVG 118

Query: 168 CAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTT 227
           CAF ESIV+ + FK NPDY NP +NT+YG+Y   CGLDNVMMSWGHD+Y+Y V K NK+T
Sbjct: 119 CAFSESIVYPESFKGNPDYDNPKYNTKYGIYQPNCGLDNVMMSWGHDEYLYQVLKHNKST 178

Query: 228 LPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVK 287
           LP  AL++IRYHSFY  H+  AY HLMNE+D E LKW++ F+ YDLYSKS    DVE +K
Sbjct: 179 LPEEALYMIRYHSFYPWHREGAYTHLMNEKDEEMLKWVKAFNPYDLYSKSDDPPDVEALK 238

Query: 288 PYYLSLIEKYFPAKLKW 304
           PYY  LI+KYFP  L+W
Sbjct: 239 PYYQELIDKYFPGVLEW 255

Family of uncharacterized eukaryotic function. Some members have a described putative function, but a common theme is not evident. Length = 255

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		304
PF05153		253	DUF706: Family of unknown function (DUF706) ; Inte	100.0
KOG1573		204	consensus Aldehyde reductase [General function pre	100.0
TIGR03276		179	Phn-HD phosphonate degradation operons associated	97.0
smart00471		124	HDc Metal dependent phosphohydrolases with conserv	95.71
TIGR00277		80	HDIG uncharacterized domain HDIG. This domain is f	94.2
TIGR00488		158	putative HD superfamily hydrolase of NAD metabolis	92.93
PF01966		122	HD: HD domain; InterPro: IPR006674 This domain is	92.65
COG4341		186	Predicted HD phosphohydrolase [General function pr	91.96
PRK00106		535	hypothetical protein; Provisional	91.11
PF08668		196	HDOD: HDOD domain; InterPro: IPR013976 This domain	89.19
TIGR01596		177	cas3_HD CRISPR-associated endonuclease Cas3-HD. CR	89.14
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	88.31
cd00077		145	HDc Metal dependent phosphohydrolases with conserv	86.96
COG2316		212	Predicted hydrolase (HD superfamily) [General func	85.16
TIGR00295		164	conserved hypothetical protein TIGR00295. This set	82.78
PRK12705		508	hypothetical protein; Provisional	80.57

>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1	Back alignment and domain information

Probab=100.00  E-value=3.4e-144  Score=990.73  Aligned_cols=251  Identities=69%  Similarity=1.202  Sum_probs=201.5

Q ss_pred             hhhHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCC
Q 022006           52 ERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDED  131 (304)
Q Consensus        52 ~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pd  131 (304)
                      +|++||++|||+||++||||||++||++|++++|++|||||||++||+||||||||+|+|||+||||||||||+|||+||
T Consensus         3 ~~~~~V~~~Y~~~h~~QTv~fv~~~~~~~~~~~~~~Mti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~d   82 (253)
T PF05153_consen    3 EACDRVKEFYRLQHTNQTVDFVKKMRAKYLKFDHAEMTIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPD   82 (253)
T ss_dssp             --HHHHHHHHHHHHCC--HHHHHHHHHHHTT--SEEE-HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-H
T ss_pred             cHhHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCcceeeHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcc
Confidence            34577999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhcccccccccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCCCCCCCCCcccCCCCcccccccc
Q 022006          132 WLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSW  211 (304)
Q Consensus       132 W~qLtGliHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSW  211 (304)
                      |||||||||||||||++  ||++|||+||||||||||+|+++|||+++|++|||.+||+||||+|||+||||||||+|||
T Consensus        83 W~~LtGLiHDLGKvl~~--~~~e~QW~vvGDTfpVGC~f~~~iv~~e~f~~NpD~~~~~YnTk~GiY~~~CGLdnv~msW  160 (253)
T PF05153_consen   83 WMQLTGLIHDLGKVLAL--FGGEPQWAVVGDTFPVGCAFSESIVFPEFFKDNPDSKNPRYNTKYGIYEPNCGLDNVMMSW  160 (253)
T ss_dssp             HHHHHHHHTTGGGHHHH--C-T--GGGTSS---BSSS---TTSTTCCC-TT-GGGCSTTTSSSSTT--TT--GGGS-B-S
T ss_pred             hhhheehhccchhhhhh--hcCCCCceeecCceeEecccCccccChhhHhhCCCCCCccccCCCCccCCCCCccceeecC
Confidence            99999999999999999  8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhHHHHHHhCCCCCChhhHHHhHhcccccccccccccccCChhhHHHHHHHHHcCCccceecCCCCCChhhhhhhhH
Q 022006          212 GHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYL  291 (304)
Q Consensus       212 GHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~l~wv~~Fn~yDLYSKs~~~pdve~lkPYY~  291 (304)
                      |||||||+|||+|+||||+|||+|||||||||||++|+|+||||++|.+||+||++||||||||||+++||||+|||||+
T Consensus       161 gHDEYlY~Vlk~n~~tLP~eaL~mIRyhSfypwH~~~~Y~~L~~~~D~~~l~wv~~Fn~~dLYSK~~~~pdve~l~PYY~  240 (253)
T PF05153_consen  161 GHDEYLYQVLKHNKSTLPEEALYMIRYHSFYPWHREGAYDHLMNEEDEEMLKWVKEFNKYDLYSKSDEPPDVEELKPYYQ  240 (253)
T ss_dssp             SHHHHHHHHHHHCT----HHHHHHHHHTT-HHHHTTS--TTT--HHHHHHHHHHHHHHHHHHHT--SS---HCCCHHHHH
T ss_pred             CchHHHHHHHHcccCccCHHHHHHHHHhccccccccchhhHhhccCcHHHHHHHHHhCCcceeeCCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCC
Q 022006          292 SLIEKYFPAKLKW  304 (304)
Q Consensus       292 ~LIdKY~P~~l~W  304 (304)
                      +|||||||++|+|
T Consensus       241 ~LidKy~P~~l~W  253 (253)
T PF05153_consen  241 SLIDKYFPGKLKW  253 (253)
T ss_dssp             HHHHHHS-S-EEE
T ss_pred             HHHHHHCCCcCCC
Confidence            9999999999998

13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.

>KOG1573 consensus Aldehyde reductase [General function prediction only]	Back alignment and domain information

>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein	Back alignment and domain information

>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif	Back alignment and domain information

>TIGR00277 HDIG uncharacterized domain HDIG	Back alignment and domain information

>TIGR00488 putative HD superfamily hydrolase of NAD metabolism	Back alignment and domain information

>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []	Back alignment and domain information

>COG4341 Predicted HD phosphohydrolase [General function prediction only]	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity	Back alignment and domain information

>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif	Back alignment and domain information

>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]	Back alignment and domain information

>TIGR00295 conserved hypothetical protein TIGR00295	Back alignment and domain information

>PRK12705 hypothetical protein; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		304
2huo_A		289	Crystal Structure Of Mouse Myo-Inositol Oxygenase I		5e-72
2ibn_A		246	Crystal Structure Of Human Myo-Inositol Oxygenase (		8e-61
2ibn_B		240	Crystal Structure Of Human Myo-Inositol Oxygenase (		6e-59

>pdb|2HUO|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase In Complex With Substrate Length = 289

Back alignment and structure

Iteration: 1

Score = 267 bits (682), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 129/271 (47%), Positives = 180/271 (66%), Gaps = 5/271 (1%) Query: 35 PQTNSFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECC 94 P+ +FR+Y G + V Y++ H +QT DFV + R +YG + +M+I E Sbjct: 23 PEMAKSKDSFRNY-TSGPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAV 81 Query: 95 ELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGL 154 +L+D+VDESDPD+D P H QTAE IRK +PD+DW HL GL+HDLGK++ L G Sbjct: 82 GMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---WGE 138 Query: 155 PQWAVVGDTFPVGCAFDESIVH-HKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGH 213 PQWAVVGDTFPVGC S+V F++NPD +P ++TE G+Y CGL+NV+MSWGH Sbjct: 139 PQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLENVLMSWGH 198 Query: 214 DDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDL 273 D+Y+Y + K NK +LPS A ++IR+HSFY H Y+ L +++D++ L W++ F+K+DL Sbjct: 199 DEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLDMLPWVQEFNKFDL 258 Query: 274 YSKSKVRIDVEKVKPYYLSLIEKYFPAKLKW 304 Y+K DVE ++PYY LI+KY P L W Sbjct: 259 YTKCPDLPDVESLRPYYQGLIDKYCPGTLSW 289

PyMOL of 2huo

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		304
2huo_A		289	Inositol oxygenase; protein-substrate complex, HD	1e-128
2ibn_A		250	Inositol oxygenase; reductase, DIIRON, structural	1e-126
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07

>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A* Length = 289	Back alignment and structure

 Score =  366 bits (940), Expect = e-128
 Identities = 130/292 (44%), Positives = 185/292 (63%), Gaps = 5/292 (1%)

Query: 14  VQEKKVPIDEKELSLDGGFLVPQTNSFGHTFRDYDAEGERQEGVENFYRINHINQTYDFV 73
               KV +      +    + P+      +FR+Y   G   + V   Y++ H +QT DFV
Sbjct: 2   AMGMKVDVGPDPSLVYRPDVDPEMAKSKDSFRNYT-SGPLLDRVFTTYKLMHTHQTVDFV 60

Query: 74  KKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWL 133
            + R +YG  +  +M+I E   +L+D+VDESDPD+D P   H  QTAE IRK +PD+DW 
Sbjct: 61  SRKRIQYGSFSYKKMTIMEAVGMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWF 120

Query: 134 HLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVH-HKYFKENPDYSNPAFN 192
           HL GL+HDLGK++   +  G PQWAVVGDTFPVGC    S+V     F++NPD  +P ++
Sbjct: 121 HLVGLLHDLGKIM---ALWGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYS 177

Query: 193 TEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKH 252
           TE G+Y   CGL+NV+MSWGHD+Y+Y + K NK +LPS A ++IR+HSFY  H    Y+ 
Sbjct: 178 TELGMYQPHCGLENVLMSWGHDEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQ 237

Query: 253 LMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSLIEKYFPAKLKW 304
           L +++D++ L W++ F+K+DLY+K     DVE ++PYY  LI+KY P  L W
Sbjct: 238 LCSQQDLDMLPWVQEFNKFDLYTKCPDLPDVESLRPYYQGLIDKYCPGTLSW 289

PyMOL of 2huo

>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4 Length = 250	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		304
2huo_A		289	Inositol oxygenase; protein-substrate complex, HD	100.0
2ibn_A		250	Inositol oxygenase; reductase, DIIRON, structural	100.0
3ccg_A		190	HD superfamily hydrolase; NP_347894.1, HD domain,	93.13
2o08_A		188	BH1327 protein; putative HD superfamily hydrolase,	93.1
2ogi_A		196	Hypothetical protein SAG1661; structural genomics,	92.53
3hc1_A		305	Uncharacterized HDOD domain protein; HDOD domain p	91.18
3ljx_A		288	MMOQ response regulator; structural genomics, PSI-	90.35
3i7a_A		281	Putative metal-dependent phosphohydrolase; YP_9268	88.34
2qgs_A		225	Protein Se1688; alpha-helical protein, structural	85.47
3djb_A		223	Hydrolase, HD family; all alpha-helical protein.,	82.57
3m1t_A		275	Putative phosphohydrolase; structural genomics, jo	82.04

>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*	Back alignment and structure

Probab=100.00  E-value=5.9e-147  Score=1021.65  Aligned_cols=274  Identities=47%  Similarity=0.913  Sum_probs=252.6

Q ss_pred             eecCC-CCCCCCc----cccccCCCccccchhhHHHHHHHHHhhhcchHHHHHHHHHHhcCCCCccccHHHHHHHHhhhh
Q 022006           27 SLDGG-FLVPQTN----SFGHTFRDYDAEGERQEGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVV  101 (304)
Q Consensus        27 ~~d~~-f~~p~~~----~~~~~fR~Y~~~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~eA~e~Ln~lv  101 (304)
                      .+|++ |.+|+.+    +++++||||+. +.+++||++|||+||++|||+||++||++|++++|++|||||||++||+||
T Consensus        10 ~~d~~~~~~p~~~~~~~k~~~~FR~Y~~-~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MtIweA~e~Ln~Lv   88 (289)
T 2huo_A           10 GPDPSLVYRPDVDPEMAKSKDSFRNYTS-GPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLV   88 (289)
T ss_dssp             ----------------------CCCSSS-CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCC
T ss_pred             cCCccceeccCccccccccHHHhhCccc-chhHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhc
Confidence            37888 6888877    77889999997 557799999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhhcccccccccCCCCCCCceeecCceeeecccCCCccccc-cc
Q 022006          102 DESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHK-YF  180 (304)
Q Consensus       102 DeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e-~F  180 (304)
                      ||||||+|+|||+||||||||||+|||..||||||||||||||||++   +++|||+||||||||||+|+++|||++ +|
T Consensus        89 DeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDLGKvl~~---~~epQW~vvGDTfpVGC~f~~~iv~~e~~F  165 (289)
T 2huo_A           89 DESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---WGEPQWAVVGDTFPVGCRPQASVVFCDSTF  165 (289)
T ss_dssp             CSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTGGGGGGG---GTCCGGGTSSCCCBSSSCCCTTSTTTTTSC
T ss_pred             CCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccchhhhhh---cCCCceeeecCcceeccccccccccchhhc
Confidence            99999999999999999999999997777999999999999999987   499999999999999999999999999 99


Q ss_pred             ccCCCCCCCCCCCCCCcccCCCCccccccccCchhhHHHHHHhCCCCCChhhHHHhHhcccccccccccccccCChhhHH
Q 022006          181 KENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVE  260 (304)
Q Consensus       181 ~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~  260 (304)
                      ++|||.+||+||||||||+||||||||+||||||||||+|||+|+||||+|||+|||||||||||++|||+||||++|.+
T Consensus       166 ~~NpD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~~L~ne~D~~  245 (289)
T 2huo_A          166 QDNPDLQDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLD  245 (289)
T ss_dssp             TTCGGGGSTTTSSSSTTCCTTCCGGGSCBCSSHHHHHHHHHHHTTCCCCHHHHHHHHHTTCHHHHTSSCCTTTCCHHHHH
T ss_pred             cCCCCCCCccccccCCcccCCCCccceeecccchHHHHHHHHcCCCCCCHHHHHHHHHhccCcccccccHhhhcChhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCccceecCCCCCChhhhhhhhHHHHHHHcCCCCCC
Q 022006          261 NLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSLIEKYFPAKLKW  304 (304)
Q Consensus       261 ~l~wv~~Fn~yDLYSKs~~~pdve~lkPYY~~LIdKY~P~~l~W  304 (304)
                      ||+||++||||||||||+++||||+|||||++|||||||++|+|
T Consensus       246 ~l~wv~~Fn~yDLYSKs~~~pdve~lkpYY~~LidKY~P~~l~W  289 (289)
T 2huo_A          246 MLPWVQEFNKFDLYTKCPDLPDVESLRPYYQGLIDKYCPGTLSW  289 (289)
T ss_dssp             HHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHHSCSCEEC
T ss_pred             HHHHHHHhCcccccccCCCCCCHHHHHHHHHHHHHHHCCcccCC
Confidence            99999999999999999999999999999999999999999999

PyMOL of 2huo

>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4	Back alignment and structure

>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}	Back alignment and structure

>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}	Back alignment and structure

>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}	Back alignment and structure

>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}	Back alignment and structure

>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A	Back alignment and structure

>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}	Back alignment and structure

>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1	Back alignment and structure

>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1	Back alignment and structure

>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		304
d2ibna1		249	a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {	1e-135

>d2ibna1 a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {Human (Homo sapiens) [TaxId: 9606]} Length = 249	Back information, alignment and structure


class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: MioX-like
domain: Myo-inositol oxygenase MioX
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  382 bits (982), Expect = e-135
 Identities = 123/251 (49%), Positives = 168/251 (66%), Gaps = 4/251 (1%)

Query: 55  EGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIE 114
           + V   Y++ H +QT DFV+    ++G  +  +M++ E  +LL+ +VDESDPD+D P   
Sbjct: 2   DRVFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSF 61

Query: 115 HLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESI 174
           H  QTAE IRK +PD+DW HL GL+HDLGKVL   +  G PQWAVVGDTFPVGC    S+
Sbjct: 62  HAFQTAEGIRKAHPDKDWFHLVGLLHDLGKVL---ALFGEPQWAVVGDTFPVGCRPQASV 118

Query: 175 VH-HKYFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGHDDYMYLVAKENKTTLPSAAL 233
           V     F++NPD  +P ++TE G+Y   CGLD V+MSWGHD+YMY V K NK +LP  A 
Sbjct: 119 VFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGHDEYMYQVMKFNKFSLPPEAF 178

Query: 234 FIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSL 293
           ++IR+HSFY  H    Y+ L +++D+  L W+  F+K+DLY+K     DV+K++PYY  L
Sbjct: 179 YMIRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGL 238

Query: 294 IEKYFPAKLKW 304
           I+KY P  L W
Sbjct: 239 IDKYCPGILSW 249

PyMOL of d2ibna1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		304
d2ibna1		249	Myo-inositol oxygenase MioX {Human (Homo sapiens)	100.0
d3b57a1		201	Uncharacterized protein Lin1889 {Listeria innocua	80.09

>d2ibna1 a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: MioX-like
domain: Myo-inositol oxygenase MioX
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-138  Score=946.76  Aligned_cols=247  Identities=51%  Similarity=0.971  Sum_probs=235.5

Q ss_pred             HHHHHHHHHhhhcchHHHHHHHHHHhcCCCCccccHHHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchh
Q 022006           55 EGVENFYRINHINQTYDFVKKMREEYGKLNRVEMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPDEDWLH  134 (304)
Q Consensus        55 ~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~eA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~q  134 (304)
                      +||++|||+||++||||||++||++|+++++++||||||+++||+|||+||||+|+|||+||||||||||++||+|||||
T Consensus         2 drV~~~Y~~~h~~QT~dfv~~~~~~~~~~~~~~mti~eale~Ln~lvD~SDPD~~lpn~~H~~QTAE~iR~~~~~~dW~q   81 (249)
T d2ibna1           2 DRVFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFH   81 (249)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcCCcceeEHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHHHHHhCCCcchHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccccccCCCCCCCceeecCceeeecccCCCccccc-ccccCCCCCCCCCCCCCCcccCCCCccccccccCc
Q 022006          135 LTGLIHDLGKVLNLPSFGGLPQWAVVGDTFPVGCAFDESIVHHK-YFKENPDYSNPAFNTEYGVYSEGCGLDNVMMSWGH  213 (304)
Q Consensus       135 LtGliHDLGKvl~l~~~~~~pQW~vvGDTfpVGC~f~~~iv~~e-~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGH  213 (304)
                      ||||||||||||++  | |+|||+||||||||||+|+++|||++ +|++|||..||+||||+|||+||||||||+|||||
T Consensus        82 L~GLiHDLGKvl~~--~-ge~qW~vVGDTf~vGC~~~~~iv~~e~~f~~NpD~~~~~yntk~GiY~~~CGLdNv~~SWGH  158 (249)
T d2ibna1          82 LVGLLHDLGKVLAL--F-GEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGH  158 (249)
T ss_dssp             HHHHHTTGGGHHHH--T-TCCGGGTSSCCCBSSSCCCTTSTTHHHHCTTCGGGGCTTTSSSSTTCCTTCCGGGSCBCCSH
T ss_pred             hhhhhhhhHHHhHh--c-CCCceeeecccceecccCCccccccccccccCccccCCccCCcccccCCCCCccceeeeccc
Confidence            99999999999998  5 79999999999999999999999998 79999999999999999999999999999999999


Q ss_pred             hhhHHHHHHhCCCCCChhhHHHhHhcccccccccccccccCChhhHHHHHHHHHcCCccceecCCCCCChhhhhhhhHHH
Q 022006          214 DDYMYLVAKENKTTLPSAALFIIRYHSFYALHKSEAYKHLMNEEDVENLKWLETFSKYDLYSKSKVRIDVEKVKPYYLSL  293 (304)
Q Consensus       214 DEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~l~wv~~Fn~yDLYSKs~~~pdve~lkPYY~~L  293 (304)
                      |||||+|||+|+++||+|||+|||||||||||++|+|+||||++|.+||+||++|||||||||+++.||+++|||||++|
T Consensus       159 DEYLY~Vlk~N~~~LP~eal~mIRyHSfYpwH~~~~Y~~l~n~~D~~ml~~V~~FN~yDLYSK~d~~pd~~~lkpYY~~L  238 (249)
T d2ibna1         159 DEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGL  238 (249)
T ss_dssp             HHHHHHHHHHHTCCCCHHHHHHHHHTTCHHHHTTCCCTTTCCHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHH
T ss_pred             hHHHHHHHhcCCCcCCHHHHHHHHhhccccccCcchHHHHhChhHHHHHHHHHhcCccccccCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCC
Q 022006          294 IEKYFPAKLKW  304 (304)
Q Consensus       294 IdKY~P~~l~W  304 (304)
                      ||||||++|+|
T Consensus       239 idKY~pg~L~W  249 (249)
T d2ibna1         239 IDKYCPGILSW  249 (249)
T ss_dssp             HHHHSCSCEEC
T ss_pred             HHHHCCCCcCC
Confidence            99999999999

PyMOL of d2ibna1

>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]}	Back information, alignment and structure