Citrus Sinensis ID: 022019

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300----
Protein Sequence
MGEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK
Secondary Structure (PSIPRED)
cccccccccEEEEEEcccccEEEEccccccEEEEEccccccccccccccccEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEccccEEEcccccccEEEEEEccccEEEEEccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEccccccccccEEEEEEcccccEEEEEccccEEEEEccccccccEEEEccccccccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEccccEEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEcccccEEEEcccccEEEEEEccccEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccccccEEEEEEcccccEEEEccccEEEEEEccccHHHHHHHHHHHHHcccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEc
Coil and Loop (DISEMBL)
MGEEEQQQTLQQQQIYSDTEVTEAAQENQqeytwplirfdvpphrtyhfynqfrtssipnnflkgikwspdgssfltssedktlrifslpengisydvnacslakdqdsyeaslvvtegesvydfcwfphmsasdptscvfasttrdhpihlwdaTTGLLRCTYRAYDAVDEITAAFSvafnptgtkifagynksvrvfdvhrpgrdfekystlkgnkegqagimsaiafspthtgmlaigsysqtsaiYREDNMELLYVLHgqeggvthvqfsrdgnylytggrkdpyILCWDLRKAVQVVYK
Flexible Loop (DISEMBL)
mgeeeqqqtLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYlytggrkdpyilCWDLRKAVQVVYK
Low Complexity Region (SEG)
MGeeeqqqtlqqqqIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK
Disordered region (IsUnstruct)
******************************EYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLT***DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN*EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY*
Disordered Region (DISOPRED)
*G**EQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK
Disordered Region (DISEMBL)
****************SDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK
Disordered Region (DISPRO)
*****QQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	304	2.2.26 [Sep-21-2011]
Q60525	538	Telomerase Cajal body pro	N/A	no	0.805	0.455	0.448	2e-61
Q8VC51	532	Telomerase Cajal body pro	yes	no	0.904	0.516	0.420	2e-60
Q5XII5	532	Telomerase Cajal body pro	yes	no	0.805	0.460	0.440	4e-60
Q9BUR4	548	Telomerase Cajal body pro	yes	no	0.937	0.520	0.412	6e-60
Q3SWZ7	540	Telomerase Cajal body pro	yes	no	0.746	0.420	0.442	3e-58
O59762	399	Guanine nucleotide-bindin	yes	no	0.792	0.604	0.289	1e-24
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.644	0.128	0.237	2e-11
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.667	0.120	0.267	5e-11
Q2TBP4	407	POC1 centriolar protein h	no	no	0.611	0.457	0.289	5e-11
Q7T0P4	441	POC1 centriolar protein h	N/A	no	0.625	0.430	0.239	1e-10

>sp|Q60525|WAP53_MESAU Telomerase Cajal body protein 1 OS=Mesocricetus auratus GN=Wrap53 PE=2 SV=1

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/254 (44%), Positives = 171/254 (67%), Gaps = 9/254 (3%)

Query: 50  YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109
           +++FR  S   NFLKG KW+PDGS  LT+S D TLRI++LP      ++ + +   D   
Sbjct: 149 WSEFRAHS--ENFLKGCKWAPDGSCILTNSADNTLRIYNLPP-----ELYSATEQVDYAE 201

Query: 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA 169
               L + EG+++YD+CW+  MS+S P +   AS++R++PIH+WDA TG LR ++RAY+ 
Sbjct: 202 MVPVLRMVEGDTIYDYCWYSLMSSSQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNH 261

Query: 170 VDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229
           +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IA
Sbjct: 262 LDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRATFA-KKQGQSGIISCIA 320

Query: 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289
           FSP+   + A GSY +T  +Y  D+   L +L G +GG+TH+ F  DGN  ++G RKD  
Sbjct: 321 FSPSQP-LYACGSYGRTLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAE 379

Query: 290 ILCWDLRKAVQVVY 303
           +LCWDLR+   +++
Sbjct: 380 LLCWDLRQPGHLLW 393

Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage.
Mesocricetus auratus (taxid: 10036)

>sp|Q8VC51|WAP53_MOUSE Telomerase Cajal body protein 1 OS=Mus musculus GN=Wrap53 PE=2 SV=1

 Score =  233 bits (593), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/288 (42%), Positives = 177/288 (61%), Gaps = 13/288 (4%)

Query: 20  EVTEAAQENQQEY----TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF 75
           E TE   E + E     T+    F   P      +++F T S   NFLKG KW+PDGS  
Sbjct: 111 EATEGVSEERAEVDEGDTFWTYSFSQVPRYLSGSWSEFSTRS--ENFLKGCKWAPDGSCI 168

Query: 76  LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135
           LT+S D  LRI++LP    S          D       L + EG+++YD+CW+  MS++ 
Sbjct: 169 LTNSADNVLRIYNLPPELYSEQEQV-----DYAEMVPVLRMVEGDTIYDYCWYSLMSSTQ 223

Query: 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS 195
           P +   AS++R++PIH+WDA TG LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++
Sbjct: 224 PDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRT 283

Query: 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255
           VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP+   + A GSY +T  +Y  D+ 
Sbjct: 284 VRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIAFSPSQP-LYACGSYGRTIGLYAWDDG 341

Query: 256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY 303
             L +L G +GG+TH+ F  DGN  ++G RKD  +LCWDLR+   +++
Sbjct: 342 SPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLW 389

Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage.

Mus musculus (taxid: 10090)

>sp|Q5XII5|WAP53_RAT Telomerase Cajal body protein 1 OS=Rattus norvegicus GN=Wrap53 PE=2 SV=1

 Score =  231 bits (590), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 112/254 (44%), Positives = 169/254 (66%), Gaps = 9/254 (3%)

Query: 50  YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109
           +++F T S   NFLKG KW+PDGS  LT+S D  LRI++LP      ++ + S   D   
Sbjct: 145 WSEFSTRS--ENFLKGCKWAPDGSCILTNSADNVLRIYNLPP-----ELYSESEQVDYAE 197

Query: 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA 169
               L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA TG LR ++RAY+ 
Sbjct: 198 MVPVLRMVEGDTIYDYCWYSLMSSTQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNH 257

Query: 170 VDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229
           +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S +A
Sbjct: 258 LDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRTTF-AKKQGQSGIISCLA 316

Query: 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289
           FSP    + A GSY +T  +Y  D+   L +L G +GG+TH+ F  DGN  ++G RKD  
Sbjct: 317 FSPAQP-LYACGSYGRTLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAE 375

Query: 290 ILCWDLRKAVQVVY 303
           +LCWDLR+   +++
Sbjct: 376 LLCWDLRQPGHLLW 389

Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage.

Rattus norvegicus (taxid: 10116)

>sp|Q9BUR4|WAP53_HUMAN Telomerase Cajal body protein 1 OS=Homo sapiens GN=WRAP53 PE=1 SV=1

 Score =  231 bits (588), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 182/296 (61%), Gaps = 11/296 (3%)

Query: 3   EEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNF 62
           EE     L   +   DT   E A E++ +  W    F   P      +++F T   P NF
Sbjct: 116 EEANGPELGSGKAMEDTS-GEPAAEDEGDTAW-NYSFSQLPRFLSGSWSEFSTQ--PENF 171

Query: 63  LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV 122
           LKG KW+PDGS  LT+S D  LRI++LP   + ++      A+        L + EG+++
Sbjct: 172 LKGCKWAPDGSCILTNSADNILRIYNLPPE-LYHEGEQVEYAE----MVPVLRMVEGDTI 226

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
           YD+CW+  MS++ P +   AS++R++PIH+WDA TG LR ++RAY+ +DE+TAA S+ F+
Sbjct: 227 YDYCWYSLMSSAQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFS 286

Query: 183 PTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS 242
           P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP    + A GS
Sbjct: 287 PDGSQLFCGFNRTVRVFSTARPGRDCEVRATF-AKKQGQSGIISCIAFSPAQP-LYACGS 344

Query: 243 YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298
           Y ++  +Y  D+   L +L G +GG+TH+ F  DGN  ++G RKD  +LCWDLR++
Sbjct: 345 YGRSLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQS 400

Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage.

Homo sapiens (taxid: 9606)

>sp|Q3SWZ7|WAP53_BOVIN Telomerase Cajal body protein 1 OS=Bos taurus GN=WRAP53 PE=2 SV=1

 Score =  225 bits (574), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/244 (44%), Positives = 162/244 (66%), Gaps = 17/244 (6%)

Query: 59  PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS----- 113
           P NFLKG KW+PDGS  LT+S D  LRI++LP            L  + +  E +     
Sbjct: 159 PENFLKGCKWAPDGSCILTNSADNILRIYNLPPE----------LYNEGEQLEYAEMAPV 208

Query: 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173
           L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA TG LR ++R+Y+ +DE+
Sbjct: 209 LRMVEGDTIYDYCWYSLMSSAQPDTSYVASSSRENPIHIWDAFTGELRASFRSYNHLDEL 268

Query: 174 TAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233
           TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    ++GQ+GI+S IAFSPT
Sbjct: 269 TAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRTTF-AKRQGQSGIISCIAFSPT 327

Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293
              + A GSY ++  +Y  ++   L +L G +GG+TH+ F  DGN  ++G RKD  +LCW
Sbjct: 328 QP-LYACGSYGRSLGLYTWEDGSPLALLGGHQGGITHLCFHPDGNCFFSGARKDAELLCW 386

Query: 294 DLRK 297
           DLR+
Sbjct: 387 DLRQ 390

Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage.

Bos taurus (taxid: 9913)

>sp|O59762|GNR1_SCHPO Guanine nucleotide-binding protein negative regulator 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gnr1 PE=1 SV=1

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 116/252 (46%), Gaps = 11/252 (4%)

Query: 59  PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE 118
           P NF    +WSPDGS+ L+ +ED+ L  +++P + +S   +         SY+       
Sbjct: 45  PLNFFHSSRWSPDGSTILSLTEDQCLNCWNVPFSDLSKKADGPLNFSKHLSYKYQ----S 100

Query: 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS 178
            E+VY + W+  M   DP+S +FA ++RD PI L + TTG  + +Y   D  +    +  
Sbjct: 101 PETVYSYSWYSRMKLDDPSSNLFAVSSRDQPIKLINFTTGKNKASYHMIDHQERYQGSHC 160

Query: 179 VAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE-----GQAGIMSAIAFSPT 233
           + F   G  + AG    +  F++    ++    +   G K         GI S  + +P 
Sbjct: 161 LQFTNDGEYLIAGDKNCLHHFNIRTGCKEPVMTTVTHGYKVPLWEFSLKGIQSCFSLNPM 220

Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQE--GGVTHVQFSRDGNYLYTGGRKDPYIL 291
            +  LA+G+YS    IY +       +    E   GVTH+Q+  DG  LY G R    I 
Sbjct: 221 DSKTLAVGTYSNRVGIYNDCGRRPCQLEFSIERGNGVTHLQWCEDGEKLYVGSRCSDKIE 280

Query: 292 CWDLRKAVQVVY 303
            WD+R    +VY
Sbjct: 281 VWDIRYVRDMVY 292

Negatively regulates the pheromone-response pathway. Acts as a structural mimic of the G protein beta subunit thereby interacting with gpa1 which then inhibits gpa1 signaling.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 40/236 (16%)

Query: 61   NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
            N++  + +SPDG++  + S D+T+R++ +  +   Y      + +   S+  S+V     
Sbjct: 1159 NWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLY------ILQGHTSWVNSVVF---- 1208

Query: 121  SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
                          +P     AS + D  + LW+  +    CT++ +      +   SV 
Sbjct: 1209 --------------NPDGSTLASGSSDQTVRLWEINSSKCLCTFQGH-----TSWVNSVV 1249

Query: 181  FNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239
            FNP G+ + +G  +K+VR++D+          S      +G    ++++AF+P  + MLA
Sbjct: 1250 FNPDGSMLASGSSDKTVRLWDISS--------SKCLHTFQGHTNWVNSVAFNPDGS-MLA 1300

Query: 240  IGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
             GS  QT  ++   + + L+   G    V+ V FS DG  L +G   D  +  W +
Sbjct: 1301 SGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGS-DDQTVRLWSI 1355

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 40/243 (16%)

Query: 53   FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA 112
            FRT +   + +  + +SPDG +  +   DKT++++   +          +L K       
Sbjct: 1106 FRTLNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDG---------TLLK------- 1149

Query: 113  SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE 172
               +T  E   +  +F       P     AS + DH I LWD T+G L  T   + A   
Sbjct: 1150 --TITGHEQTVNNVYF------SPDGKNLASASSDHSIKLWDTTSGQLLMTLTGHSA--- 1198

Query: 173  ITAAFSVAFNPTGTKIFAGY-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS 231
                 +V F+P G  I AG  +K+V+++  HR  +D +   TL G+++     +++++FS
Sbjct: 1199 --GVITVRFSPDGQTIAAGSEDKTVKLW--HR--QDGKLLKTLNGHQD----WVNSLSFS 1248

Query: 232  PTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL 291
            P     LA  S  +T  ++R  + +L+  L G    V  V FS DG  + +  R D  I 
Sbjct: 1249 PDGK-TLASASADKTIKLWRIADGKLVKTLKGHNDSVWDVNFSSDGKAIASASR-DNTIK 1306

Query: 292  CWD 294
             W+
Sbjct: 1307 LWN 1309

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q2TBP4|POC1A_BOVIN POC1 centriolar protein homolog A OS=Bos taurus GN=POC1A PE=2 SV=1

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 52/238 (21%)

Query: 63  LKGIKWSPDGSSFLTSSEDKTLRIFSLPEN----GISYDVNACSLAKDQDSYEASLVVTE 118
           ++ + +  DG SF+T+S+DKT++++S         +S  +N    AK   S +  L+V  
Sbjct: 106 VRSVHFCSDGQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKF--SPDGRLIV-- 161

Query: 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS 178
                        SASD           D  + LWD T+    C +   +    +T    
Sbjct: 162 -------------SASD-----------DKTVKLWDKTS--RECVHSYCEHGGFVTY--- 192

Query: 179 VAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM 237
           V F+P+GT I A G + +V+V+DV R  R  + Y       +  +  ++A++F P+   +
Sbjct: 193 VDFHPSGTCIAAAGMDNTVKVWDV-RTHRLLQHY-------QLHSAAVNALSFHPSGNYL 244

Query: 238 LAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293
           +   S S    +   D ME  LLY LHG +G  T V FSR G Y  +GG  D  ++ W
Sbjct: 245 VTASSDSTLKIL---DLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGG-SDEQVMVW 298

Bos taurus (taxid: 9913)

>sp|Q7T0P4|POC1A_XENLA POC1 centriolar protein homolog A OS=Xenopus laevis GN=poc1a PE=1 SV=2

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 108/234 (46%), Gaps = 44/234 (18%)

Query: 63  LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV 122
           ++ + +S DG S +T+S+DKT++++++      + +N                       
Sbjct: 105 VRSVSFSGDGQSLVTASDDKTIKVWTVHRQKFLFSLNQ---------------------- 142

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
               W    +   P   +  S + D  I LWD T+     ++  +           V F+
Sbjct: 143 -HINWV-RCAKFSPDGRLIVSASDDKTIKLWDKTSRECIQSFCEHGGFVNF-----VDFH 195

Query: 183 PTGTKIFAGY-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
           P+GT I A   + +V+V+D+ R  +  + Y          +G++++++F P+   ++   
Sbjct: 196 PSGTCIAAAATDNTVKVWDI-RMNKLIQHYQV-------HSGVVNSLSFHPSGNYLI--- 244

Query: 242 SYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293
           + S  S +   D +E  LLY LHG +G VT V+FSR+G++  +GG  D  ++ W
Sbjct: 245 TASNDSTLKVLDLLEGRLLYTLHGHQGPVTCVKFSREGDFFASGG-SDEQVMVW 297

Involved in early steps of centriole duplication, as well as in the later steps of centriole length control.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
224114069	374	predicted protein [Populus trichocarpa]	0.901	0.732	0.807	1e-137
255569287	422	WD-repeat protein, putative [Ricinus com	0.967	0.696	0.746	1e-136
359495466	407	PREDICTED: telomerase Cajal body protein	0.924	0.690	0.764	1e-134
449457694	417	PREDICTED: telomerase Cajal body protein	0.976	0.712	0.717	1e-132
449488413	417	PREDICTED: telomerase Cajal body protein	0.976	0.712	0.713	1e-132
357475895	427	Telomerase Cajal body protein [Medicago	0.963	0.686	0.703	1e-125
30685465	425	transducin/WD40 domain-containing protei	0.914	0.654	0.725	1e-124
297799914	426	transducin family protein [Arabidopsis l	0.914	0.652	0.722	1e-123
147846785	857	hypothetical protein VITISV_023070 [Viti	0.947	0.336	0.656	1e-121
356521301	447	PREDICTED: telomerase Cajal body protein	0.904	0.615	0.692	1e-116

>gi|224114069|ref|XP_002316658.1| predicted protein [Populus trichocarpa] gi|222859723|gb|EEE97270.1| predicted protein [Populus trichocarpa]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 223/276 (80%), Positives = 254/276 (92%), Gaps = 2/276 (0%)

Query: 29  QQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFS 88
           QQ+YTWP+IR+++PP RT+HF+ QFRTS  PNNFLKGIKWSPDGS FLTSSED TL  FS
Sbjct: 2   QQDYTWPVIRYNLPPQRTHHFFKQFRTS--PNNFLKGIKWSPDGSCFLTSSEDNTLHSFS 59

Query: 89  LPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH 148
           LP+NG   D + C LA D+DSY+ASL+V EGESVYD+CW+P+M+ASDP SCVFA+TTRDH
Sbjct: 60  LPDNGSGSDADGCCLAIDEDSYDASLIVKEGESVYDYCWYPYMTASDPVSCVFATTTRDH 119

Query: 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF 208
           PIHLWDAT+GLLRCTYRAYDAVDEITAA S+AFNP GTKIFAGYNKS+RVFD+HRPGRDF
Sbjct: 120 PIHLWDATSGLLRCTYRAYDAVDEITAAISIAFNPAGTKIFAGYNKSIRVFDIHRPGRDF 179

Query: 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV 268
            +YST++GNKEGQ GI+SA+AFSPTHTGMLA GSYSQT+AIYREDNMELLYVLHGQEGG+
Sbjct: 180 AQYSTIQGNKEGQTGIISAVAFSPTHTGMLATGSYSQTTAIYREDNMELLYVLHGQEGGI 239

Query: 269 THVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK 304
           THVQFS+DGNYLYTGGRKDPYILCWD+RKAV+VVYK
Sbjct: 240 THVQFSKDGNYLYTGGRKDPYILCWDIRKAVEVVYK 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569287|ref|XP_002525611.1| WD-repeat protein, putative [Ricinus communis] gi|223535047|gb|EEF36729.1| WD-repeat protein, putative [Ricinus communis]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 227/304 (74%), Positives = 262/304 (86%), Gaps = 10/304 (3%)

Query: 1   MGEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPN 60
           MGEE       Q  I    E TE+ +   Q+ +WP+IRFD+PP RT+HFY QFR+S IPN
Sbjct: 1   MGEE-------QPSIEVAAETTESVE---QDNSWPVIRFDLPPQRTHHFYKQFRSSPIPN 50

Query: 61  NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
           NFLKGIKWSPDGS FLTSSEDKTLR+FSLP+   S D  ACSL  DQDSY++S+VV EGE
Sbjct: 51  NFLKGIKWSPDGSCFLTSSEDKTLRVFSLPDYCSSDDSIACSLDTDQDSYDSSIVVKEGE 110

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
           SVYDFCW+P+M+ASDP SCVFASTTRDHPIHLWDA++GLLRCTYRAYDAVDEITAAFS++
Sbjct: 111 SVYDFCWYPYMTASDPVSCVFASTTRDHPIHLWDASSGLLRCTYRAYDAVDEITAAFSIS 170

Query: 181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
           FNP G K+FAGYNKS+RVFD+HRPGR FE++STL+GNKEGQ GI+S+IAF PTH+GMLA 
Sbjct: 171 FNPAGNKMFAGYNKSIRVFDIHRPGRVFEQHSTLQGNKEGQTGIISSIAFCPTHSGMLAT 230

Query: 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
           GSYS T+AI+REDNMELLYVLHGQEGG+TH+QFSRDGNYLYTGGRKDPYILCWD+RK  +
Sbjct: 231 GSYSHTTAIFREDNMELLYVLHGQEGGITHIQFSRDGNYLYTGGRKDPYILCWDMRKTAE 290

Query: 301 VVYK 304
           VVYK
Sbjct: 291 VVYK 294

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495466|ref|XP_002277046.2| PREDICTED: telomerase Cajal body protein 1-like [Vitis vinifera] gi|302144185|emb|CBI23312.3| unnamed protein product [Vitis vinifera]

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 218/285 (76%), Positives = 253/285 (88%), Gaps = 4/285 (1%)

Query: 20  EVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS 79
           E+   A++ ++EY+WP+IRFDVPPHR YHF +QFRT S PNNFLKG+KWSPDGS FLTSS
Sbjct: 23  EIGNEAKQVEEEYSWPVIRFDVPPHRAYHFCHQFRTPSNPNNFLKGVKWSPDGSCFLTSS 82

Query: 80  EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139
           ED TLR+FSLPENG  +  +AC    D+DSY AS+VV+EGES++D CW+P+MSASDP +C
Sbjct: 83  EDNTLRLFSLPENGSDHHESAC----DEDSYAASIVVSEGESIHDHCWYPYMSASDPVTC 138

Query: 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVF 199
           VFASTTRDHPIHLWDA +G LRCTYRAYDAVDEIT AFS+AFNP GTKIFAGYNK +RVF
Sbjct: 139 VFASTTRDHPIHLWDAASGELRCTYRAYDAVDEITTAFSIAFNPAGTKIFAGYNKCLRVF 198

Query: 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY 259
           DVHRPGRDFE+YST+KGNKEGQ+GI++AIAF PTHTGMLA GSYS+T+AIYREDNMELLY
Sbjct: 199 DVHRPGRDFEQYSTIKGNKEGQSGIIAAIAFCPTHTGMLATGSYSRTTAIYREDNMELLY 258

Query: 260 VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK 304
           +LHGQEGGVT+VQFS+DGN+LYTGGRKDPYILCWD+R  V  VYK
Sbjct: 259 ILHGQEGGVTNVQFSKDGNFLYTGGRKDPYILCWDIRNTVNTVYK 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457694|ref|XP_004146583.1| PREDICTED: telomerase Cajal body protein 1-like [Cucumis sativus]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 218/304 (71%), Positives = 262/304 (86%), Gaps = 7/304 (2%)

Query: 1   MGEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPN 60
           M EE++ ++    +  ++T +     ++QQ Y+WP+I+F+ PP RTYHFYNQFRTS  PN
Sbjct: 9   MEEEDENRSNPTGEATAETTM----NDDQQSYSWPVIQFNSPPRRTYHFYNQFRTSPNPN 64

Query: 61  NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
           NF KG+KWSPDGS FLTSSED +LRIF+LP+ G    VN   +A ++DS+ ++LVV EGE
Sbjct: 65  NFFKGVKWSPDGSCFLTSSEDNSLRIFNLPDYGDDVSVN---VAAEEDSFTSNLVVGEGE 121

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
           SVYDFCW+P+MSASDP +CVFASTTRDHPIHLWDA +G LRCTYRAYDA+DEITAAFS+A
Sbjct: 122 SVYDFCWYPYMSASDPVTCVFASTTRDHPIHLWDAASGELRCTYRAYDAMDEITAAFSIA 181

Query: 181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
           FNP GTKIFAGYNK VR+FD+HRPGRDF ++STL+GNKEGQ GI+SAIAFSPTH+GMLA+
Sbjct: 182 FNPAGTKIFAGYNKLVRIFDLHRPGRDFGQHSTLQGNKEGQTGIISAIAFSPTHSGMLAL 241

Query: 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
           GSYSQT+ IYREDNMELLYVLHGQEGG+TH+QFS+DGNYLYTGGRKDPYILCWD+RK+V 
Sbjct: 242 GSYSQTTGIYREDNMELLYVLHGQEGGITHIQFSKDGNYLYTGGRKDPYILCWDIRKSVD 301

Query: 301 VVYK 304
           VVYK
Sbjct: 302 VVYK 305

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488413|ref|XP_004158026.1| PREDICTED: telomerase Cajal body protein 1-like [Cucumis sativus]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 217/304 (71%), Positives = 262/304 (86%), Gaps = 7/304 (2%)

Query: 1   MGEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPN 60
           M EE++ ++    +  ++T +     ++QQ Y+WP+I+F+ PP RTYHFYNQFRTS  PN
Sbjct: 9   MEEEDENRSNPTGEATAETTM----NDDQQSYSWPVIQFNSPPRRTYHFYNQFRTSPNPN 64

Query: 61  NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
           NF KG+KWSPDGS FLTSSED +LRIF+LP+ G    VN   +A ++DS+ ++LVV EGE
Sbjct: 65  NFFKGVKWSPDGSCFLTSSEDNSLRIFNLPDYGDDVSVN---VAAEEDSFTSNLVVGEGE 121

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
           SVYDFCW+P+MSASDP +CVFASTTRDHPIHLWDA +G LRCTYRAYDA+DEITAAFS+A
Sbjct: 122 SVYDFCWYPYMSASDPVTCVFASTTRDHPIHLWDAASGELRCTYRAYDAMDEITAAFSIA 181

Query: 181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
           FNP GTKIF+GYNK VR+FD+HRPGRDF ++STL+GNKEGQ GI+SAIAFSPTH+GMLA+
Sbjct: 182 FNPAGTKIFSGYNKLVRIFDLHRPGRDFGQHSTLQGNKEGQTGIISAIAFSPTHSGMLAL 241

Query: 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
           GSYSQT+ IYREDNMELLYVLHGQEGG+TH+QFS+DGNYLYTGGRKDPYILCWD+RK+V 
Sbjct: 242 GSYSQTTGIYREDNMELLYVLHGQEGGITHIQFSKDGNYLYTGGRKDPYILCWDIRKSVD 301

Query: 301 VVYK 304
           VVYK
Sbjct: 302 VVYK 305

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475895|ref|XP_003608233.1| Telomerase Cajal body protein [Medicago truncatula] gi|355509288|gb|AES90430.1| Telomerase Cajal body protein [Medicago truncatula]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/304 (70%), Positives = 253/304 (83%), Gaps = 11/304 (3%)

Query: 1   MGEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPN 60
           MGEE ++    Q       E+        +EY+WP++RFDV PHRTYHF+ QF + + PN
Sbjct: 1   MGEEAEEVIELQPDASIPNEI--------EEYSWPVLRFDVSPHRTYHFHQQFTSPTNPN 52

Query: 61  NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
           NFLK +KWSPDGSSFLTSS+D TLR+F+LP  G   D+     +  QDSY ASLV++EGE
Sbjct: 53  NFLKAVKWSPDGSSFLTSSDDNTLRLFTLP--GADSDI-PLDTSDYQDSYAASLVMSEGE 109

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
           S++DFCW+P+MSASDP + VFA+TTRDHPIHLWDAT+G LRCTYRAYDA+DEITAAFSVA
Sbjct: 110 SIHDFCWYPYMSASDPVTNVFATTTRDHPIHLWDATSGQLRCTYRAYDAMDEITAAFSVA 169

Query: 181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
           FNP+GTKIFAGYNK +R+FD+HRPGRDF+ +ST+K  KEGQ GI+SA+AFSP+HTGMLA+
Sbjct: 170 FNPSGTKIFAGYNKCIRMFDLHRPGRDFKLHSTVKDKKEGQTGIISALAFSPSHTGMLAL 229

Query: 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
           GSYSQT+AIY EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD+RKAV 
Sbjct: 230 GSYSQTTAIYTEDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDVRKAVD 289

Query: 301 VVYK 304
            VYK
Sbjct: 290 CVYK 293

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685465|ref|NP_193883.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|23296375|gb|AAN13056.1| unknown protein [Arabidopsis thaliana] gi|332659062|gb|AEE84462.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 204/281 (72%), Positives = 243/281 (86%), Gaps = 3/281 (1%)

Query: 25  AQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTL 84
            +  +Q+ +WP +RFDV P+RT+HF  QFRT+  PNNFLKG+KWSPDGS FL SSED TL
Sbjct: 16  VESGEQKSSWPTMRFDVSPYRTHHFSKQFRTARNPNNFLKGLKWSPDGSCFLASSEDNTL 75

Query: 85  RIFSLPENGISYDVNACSL-AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143
            +F LP++G   D N   +   ++DSY ASL+V EGESVYDFCW+P+MS SDP +CVFA+
Sbjct: 76  SLFHLPQDGG--DSNGYGVPVPEEDSYGASLLVNEGESVYDFCWYPYMSVSDPLTCVFAT 133

Query: 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203
           +TRDHPIHLWD+T+G LRCTYRAYDA+DEITAAFSV FNP GTKIFAGYN S+RVFD+HR
Sbjct: 134 STRDHPIHLWDSTSGELRCTYRAYDAMDEITAAFSVGFNPDGTKIFAGYNSSIRVFDLHR 193

Query: 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG 263
           PGRDF +YSTL+ NKEGQAGI+S +AFSPT++GMLA+GSY QT+ IYREDNMELLYVLHG
Sbjct: 194 PGRDFRQYSTLQKNKEGQAGILSTLAFSPTNSGMLAVGSYGQTTGIYREDNMELLYVLHG 253

Query: 264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK 304
           QEGGVTHVQFS+DGNYLYTGGRKDPYILCWD+RK+V++VYK
Sbjct: 254 QEGGVTHVQFSKDGNYLYTGGRKDPYILCWDIRKSVEIVYK 294

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799914|ref|XP_002867841.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297313677|gb|EFH44100.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 203/281 (72%), Positives = 241/281 (85%), Gaps = 3/281 (1%)

Query: 25  AQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTL 84
            +  +Q  +WP +RFDV P+RT+HF  QFRT+  PNNFLKG+KWSPDGS FL SSED TL
Sbjct: 16  VESGEQNSSWPTMRFDVSPYRTHHFSKQFRTARNPNNFLKGLKWSPDGSCFLASSEDNTL 75

Query: 85  RIFSLPENGISYDVNACSL-AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143
            +F LP++G   D N   +   ++DSY ASL+V EGESVYDFCW+P+MS SDP +CVFA+
Sbjct: 76  SLFHLPQDGG--DSNGYGVPVPEEDSYGASLLVNEGESVYDFCWYPYMSVSDPLTCVFAT 133

Query: 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203
           +TRDHPIHLWD+T+G LRCTYRAYDA+DEITAAFSV FNP GTKIFAGYN  +RVFD+HR
Sbjct: 134 STRDHPIHLWDSTSGELRCTYRAYDAMDEITAAFSVGFNPDGTKIFAGYNSFIRVFDLHR 193

Query: 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG 263
           PGRDF +YSTL+ NKEGQAGI+S +AFSPT++GMLA+GSY QT+ IYREDNMELLYVLHG
Sbjct: 194 PGRDFGQYSTLQKNKEGQAGILSTLAFSPTNSGMLAVGSYGQTTGIYREDNMELLYVLHG 253

Query: 264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK 304
           QEGGVTHVQFS+DGNYLYTGGRKDPYILCWD+RK+V++VYK
Sbjct: 254 QEGGVTHVQFSKDGNYLYTGGRKDPYILCWDIRKSVEIVYK 294

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846785|emb|CAN78502.1| hypothetical protein VITISV_023070 [Vitis vinifera]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/320 (65%), Positives = 247/320 (77%), Gaps = 32/320 (10%)

Query: 2   GEEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNN 61
           GEEEQ     + +     E+   A++ ++EY+WP+IRFDVPPHR YHF +QFRT S PNN
Sbjct: 4   GEEEQPNLGDEAE-----EIGNEAKQVEEEYSWPVIRFDVPPHRAYHFCHQFRTPSNPNN 58

Query: 62  FLKGIKWSPDGSSFLTSSEDKTLRI-----------------FSLPENGISYDVNACSLA 104
           FLKG+KW      F      + LRI                  S PENG  +  +AC   
Sbjct: 59  FLKGVKWRNVKIGF------RNLRITVAIXCSGKLGMNRNNMMSRPENGSDHXESAC--- 109

Query: 105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTY 164
            D+DSY AS+VV+EGES++D CW+P+MSASDP +CVFASTTRDHPIHLWDA +G LRCTY
Sbjct: 110 -DEDSYAASIVVSEGESIHDHCWYPYMSASDPVTCVFASTTRDHPIHLWDAASGELRCTY 168

Query: 165 RAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224
           RAYDAVDEIT AFS+AFNP GTKIFAGYNK +RVFDVHRPGRDFE+YST+KGNKEGQ+GI
Sbjct: 169 RAYDAVDEITTAFSIAFNPAGTKIFAGYNKCLRVFDVHRPGRDFEQYSTIKGNKEGQSGI 228

Query: 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284
           ++AIAF PTHTGMLA GSYS+T+AIYREDNMELLY+LHGQEGGVT+VQFS+DGN+LYTGG
Sbjct: 229 IAAIAFCPTHTGMLATGSYSRTTAIYREDNMELLYILHGQEGGVTNVQFSKDGNFLYTGG 288

Query: 285 RKDPYILCWDLRKAVQVVYK 304
           RKDPYILCWD+R  V  VYK
Sbjct: 289 RKDPYILCWDIRNTVNTVYK 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521301|ref|XP_003529295.1| PREDICTED: telomerase Cajal body protein 1-like [Glycine max]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/283 (69%), Positives = 233/283 (82%), Gaps = 8/283 (2%)

Query: 30  QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSL 89
           +EY++P++RFDV PHRTYHF+ QF T S PNNF K +KWSPDGS FLTSS+D TLR+F+ 
Sbjct: 41  EEYSFPVLRFDVSPHRTYHFHRQFITPSNPNNFFKAVKWSPDGSCFLTSSDDNTLRLFAP 100

Query: 90  PENGISYDVNACSLAKDQ--------DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141
           P       V A               DS+ A++V+ EGES++DFCW+P+MS+SD  + VF
Sbjct: 101 PGTESDAPVAASGHGDGNHESSLFVADSFAANVVMHEGESIHDFCWYPYMSSSDLVTNVF 160

Query: 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDV 201
           A+TTRDHPIHLWDAT+G LRCTYRAYDA+DEITAAFS+AFNP GTKIFAGYNK +R+FD+
Sbjct: 161 ATTTRDHPIHLWDATSGQLRCTYRAYDAMDEITAAFSIAFNPAGTKIFAGYNKCIRLFDL 220

Query: 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL 261
           HRPGRDFE YST+K  KEGQ GI+SA+AFSP  +GMLA+GSY+QT+AIYREDNMELLY L
Sbjct: 221 HRPGRDFELYSTVKDKKEGQTGIISAMAFSPFPSGMLALGSYNQTTAIYREDNMELLYFL 280

Query: 262 HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK 304
           HGQEGG+THVQFSRDGNYLYTGGRKDPYILCWD+RK+V  VYK
Sbjct: 281 HGQEGGITHVQFSRDGNYLYTGGRKDPYILCWDVRKSVDCVYK 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	304
TAIR|locus:2119617	425	AT4G21520 "AT4G21520" [Arabido	0.911	0.651	0.728	2.1e-116
UNIPROTKB|Q60525	538	Wrap53 "Telomerase Cajal body	0.786	0.444	0.459	1.1e-57
MGI|MGI:2384933	532	Wrap53 "WD repeat containing,	0.884	0.505	0.429	2.2e-57
UNIPROTKB|Q9BUR4	548	WRAP53 "Telomerase Cajal body	0.875	0.485	0.423	5.9e-57
RGD|1359624	532	Wrap53 "WD repeat containing,	0.871	0.498	0.425	7.5e-57
UNIPROTKB|F1ST42	539	WRAP53 "Uncharacterized protei	0.871	0.491	0.432	1.2e-56
UNIPROTKB|F1MJW9	540	WRAP53 "Telomerase Cajal body	0.888	0.5	0.418	6.8e-56
UNIPROTKB|Q3SWZ7	540	WRAP53 "Telomerase Cajal body	0.888	0.5	0.418	6.8e-56
FB|FBgn0031782	543	WDR79 "WD repeat domain 79 hom	0.776	0.434	0.337	8e-37
POMBASE|SPCC1020.09	399	gnr1 "heterotrimeric G protein	0.792	0.604	0.289	5.9e-25

TAIR|locus:2119617 AT4G21520 "AT4G21520" [Arabidopsis thaliana (taxid:3702)]

 Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
 Identities = 204/280 (72%), Positives = 243/280 (86%)

Query:    26 QENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLR 85
             +  +Q+ +WP +RFDV P+RT+HF  QFRT+  PNNFLKG+KWSPDGS FL SSED TL 
Sbjct:    17 ESGEQKSSWPTMRFDVSPYRTHHFSKQFRTARNPNNFLKGLKWSPDGSCFLASSEDNTLS 76

Query:    86 IFSLPENGISYDVNACSL-AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144
             +F LP++G   D N   +   ++DSY ASL+V EGESVYDFCW+P+MS SDP +CVFA++
Sbjct:    77 LFHLPQDG--GDSNGYGVPVPEEDSYGASLLVNEGESVYDFCWYPYMSVSDPLTCVFATS 134

Query:   145 TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP 204
             TRDHPIHLWD+T+G LRCTYRAYDA+DEITAAFSV FNP GTKIFAGYN S+RVFD+HRP
Sbjct:   135 TRDHPIHLWDSTSGELRCTYRAYDAMDEITAAFSVGFNPDGTKIFAGYNSSIRVFDLHRP 194

Query:   205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ 264
             GRDF +YSTL+ NKEGQAGI+S +AFSPT++GMLA+GSY QT+ IYREDNMELLYVLHGQ
Sbjct:   195 GRDFRQYSTLQKNKEGQAGILSTLAFSPTNSGMLAVGSYGQTTGIYREDNMELLYVLHGQ 254

Query:   265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYK 304
             EGGVTHVQFS+DGNYLYTGGRKDPYILCWD+RK+V++VYK
Sbjct:   255 EGGVTHVQFSKDGNYLYTGGRKDPYILCWDIRKSVEIVYK 294

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q60525 Wrap53 "Telomerase Cajal body protein 1" [Mesocricetus auratus (taxid:10036)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 114/248 (45%), Positives = 168/248 (67%)

Query:    50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109
             +++FR  S   NFLKG KW+PDGS  LT+S D TLRI++LP      ++ + +   D   
Sbjct:   149 WSEFRAHS--ENFLKGCKWAPDGSCILTNSADNTLRIYNLPP-----ELYSATEQVDYAE 201

Query:   110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA 169
                 L + EG+++YD+CW+  MS+S P +   AS++R++PIH+WDA TG LR ++RAY+ 
Sbjct:   202 MVPVLRMVEGDTIYDYCWYSLMSSSQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNH 261

Query:   170 VDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229
             +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IA
Sbjct:   262 LDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIA 320

Query:   230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289
             FSP+   + A GSY +T  +Y  D+   L +L G +GG+TH+ F  DGN  ++G RKD  
Sbjct:   321 FSPSQP-LYACGSYGRTLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAE 379

Query:   290 ILCWDLRK 297
             +LCWDLR+
Sbjct:   380 LLCWDLRQ 387

GO:0003723 "RNA binding" evidence=ISS

GO:0005697 "telomerase holoenzyme complex" evidence=ISS

GO:0015030 "Cajal body" evidence=ISS

GO:0032203 "telomere formation via telomerase" evidence=ISS

GO:0051973 "positive regulation of telomerase activity" evidence=ISS

MGI|MGI:2384933 Wrap53 "WD repeat containing, antisense to TP53" [Mus musculus (taxid:10090)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 121/282 (42%), Positives = 174/282 (61%)

Query:    20 EVTEAAQENQQEY----TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF 75
             E TE   E + E     T+    F   P      +++F T S   NFLKG KW+PDGS  
Sbjct:   111 EATEGVSEERAEVDEGDTFWTYSFSQVPRYLSGSWSEFSTRS--ENFLKGCKWAPDGSCI 168

Query:    76 LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135
             LT+S D  LRI++LP    S          D       L + EG+++YD+CW+  MS++ 
Sbjct:   169 LTNSADNVLRIYNLPPELYSEQEQV-----DYAEMVPVLRMVEGDTIYDYCWYSLMSSTQ 223

Query:   136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS 195
             P +   AS++R++PIH+WDA TG LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++
Sbjct:   224 PDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRT 283

Query:   196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255
             VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP+   + A GSY +T  +Y  D+ 
Sbjct:   284 VRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIAFSPSQP-LYACGSYGRTIGLYAWDDG 341

Query:   256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
               L +L G +GG+TH+ F  DGN  ++G RKD  +LCWDLR+
Sbjct:   342 SPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQ 383

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005697 "telomerase holoenzyme complex" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0015030 "Cajal body" evidence=ISO

GO:0032203 "telomere formation via telomerase" evidence=ISO

GO:0051973 "positive regulation of telomerase activity" evidence=ISO

UNIPROTKB|Q9BUR4 WRAP53 "Telomerase Cajal body protein 1" [Homo sapiens (taxid:9606)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 117/276 (42%), Positives = 176/276 (63%)

Query:    23 EAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK 82
             E A E++ +  W    F   P      +++F T   P NFLKG KW+PDGS  LT+S D 
Sbjct:   135 EPAAEDEGDTAWNY-SFSQLPRFLSGSWSEFSTQ--PENFLKGCKWAPDGSCILTNSADN 191

Query:    83 TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142
              LRI++LP   + ++      A+        L + EG+++YD+CW+  MS++ P +   A
Sbjct:   192 ILRIYNLPPE-LYHEGEQVEYAE----MVPVLRMVEGDTIYDYCWYSLMSSAQPDTSYVA 246

Query:   143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVH 202
             S++R++PIH+WDA TG LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF   
Sbjct:   247 SSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTA 306

Query:   203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262
             RPGRD E  +T    K+GQ+GI+S IAFSP    + A GSY ++  +Y  D+   L +L 
Sbjct:   307 RPGRDCEVRATF-AKKQGQSGIISCIAFSPAQP-LYACGSYGRSLGLYAWDDGSPLALLG 364

Query:   263 GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298
             G +GG+TH+ F  DGN  ++G RKD  +LCWDLR++
Sbjct:   365 GHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQS 400

GO:0005515 "protein binding" evidence=IPI

GO:0051973 "positive regulation of telomerase activity" evidence=IDA

GO:0005697 "telomerase holoenzyme complex" evidence=IDA

GO:0015030 "Cajal body" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0032203 "telomere formation via telomerase" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

RGD|1359624 Wrap53 "WD repeat containing, antisense to TP53" [Rattus norvegicus (taxid:10116)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 117/275 (42%), Positives = 176/275 (64%)

Query:    23 EAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK 82
             E A  ++ +  W      VP + +   +++F T S   NFLKG KW+PDGS  LT+S D 
Sbjct:   119 EPAAVDEGDIFWSYSFSQVPQYLSGS-WSEFSTRS--ENFLKGCKWAPDGSCILTNSADN 175

Query:    83 TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142
              LRI++LP      ++ + S   D       L + EG+++YD+CW+  MS++ P +   A
Sbjct:   176 VLRIYNLPP-----ELYSESEQVDYAEMVPVLRMVEGDTIYDYCWYSLMSSTQPDTSYVA 230

Query:   143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVH 202
             S++R++PIH+WDA TG LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF   
Sbjct:   231 SSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTS 290

Query:   203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262
             RPGRD E  +T    K+GQ+GI+S +AFSP    + A GSY +T  +Y  D+   L +L 
Sbjct:   291 RPGRDCEVRTTF-AKKQGQSGIISCLAFSPAQP-LYACGSYGRTLGLYAWDDGSPLALLG 348

Query:   263 GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
             G +GG+TH+ F  DGN  ++G RKD  +LCWDLR+
Sbjct:   349 GHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQ 383

GO:0003723 "RNA binding" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005697 "telomerase holoenzyme complex" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0015030 "Cajal body" evidence=ISO;ISS

GO:0032203 "telomere formation via telomerase" evidence=ISO;ISS

GO:0051973 "positive regulation of telomerase activity" evidence=ISO;ISS

UNIPROTKB|F1ST42 WRAP53 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 119/275 (43%), Positives = 174/275 (63%)

Query:    23 EAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK 82
             E A E++   TW    F   P      +++F T   P NFLKG KW+PDGS  LT+S D 
Sbjct:   126 EPAPEDEGYTTWNY-SFSQLPRFLSGSWSEFSTQ--PENFLKGCKWAPDGSCILTNSADN 182

Query:    83 TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142
              LRI++LP    S +      A+        L + EG+++YD+CW+  MS++ P +   A
Sbjct:   183 VLRIYNLPPELYS-EGEQLEYAE----MAPVLRMMEGDTIYDYCWYSLMSSAQPDTSYVA 237

Query:   143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVH 202
             S++R +PIH+WDA TG LR ++R+Y+ +DE+TAA S+ F+P G+++F G+N++VRVF   
Sbjct:   238 SSSRQNPIHIWDAFTGELRASFRSYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTS 297

Query:   203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262
             RPGRD E  +T    ++GQ+GI+S IAFSPT   + A GSY ++  +Y  D+   L +L 
Sbjct:   298 RPGRDCEVRATF-AKRQGQSGIISCIAFSPTQP-LYACGSYGRSLGLYAWDDGSPLALLG 355

Query:   263 GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
             G +GGVTH+ F  DGN  ++G RKD  +LCWDLR+
Sbjct:   356 GHQGGVTHLCFHPDGNRFFSGARKDAELLCWDLRQ 390

GO:0051973 "positive regulation of telomerase activity" evidence=IEA

GO:0032203 "telomere formation via telomerase" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005697 "telomerase holoenzyme complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1MJW9 WRAP53 "Telomerase Cajal body protein 1" [Bos taurus (taxid:9913)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 118/282 (41%), Positives = 176/282 (62%)

Query:    18 DTE-VTEAAQENQQEYT-WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF 75
             D E V+E      + YT W    F   P      +++F T   P NFLKG KW+PDGS  
Sbjct:   119 DVEGVSEELTPEDEGYTIWNY-NFSQVPRFLSGSWSEFITQ--PENFLKGCKWAPDGSCI 175

Query:    76 LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135
             LT+S D  LRI++LP     Y+        +       L + EG+++YD+CW+  MS++ 
Sbjct:   176 LTNSADNILRIYNLPPE--LYNEGE---QLEYAEMAPVLRMVEGDTIYDYCWYSLMSSAQ 230

Query:   136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS 195
             P +   AS++R++PIH+WDA TG LR ++R+Y+ +DE+TAA S+ F+P G+++F G+N++
Sbjct:   231 PDTSYVASSSRENPIHIWDAFTGELRASFRSYNHLDELTAAHSLCFSPDGSQLFCGFNRT 290

Query:   196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255
             VRVF   RPGRD E  +T    ++GQ+GI+S IAFSPT   + A GSY ++  +Y  ++ 
Sbjct:   291 VRVFSTSRPGRDCEVRTTF-AKRQGQSGIISCIAFSPTQP-LYACGSYGRSLGLYTWEDG 348

Query:   256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
               L +L G +GG+TH+ F  DGN  ++G RKD  +LCWDLR+
Sbjct:   349 SPLALLGGHQGGITHLCFHPDGNCFFSGARKDAELLCWDLRQ 390

GO:0051973 "positive regulation of telomerase activity" evidence=IEA

GO:0032203 "telomere formation via telomerase" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005697 "telomerase holoenzyme complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q3SWZ7 WRAP53 "Telomerase Cajal body protein 1" [Bos taurus (taxid:9913)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 118/282 (41%), Positives = 176/282 (62%)

Query:    18 DTE-VTEAAQENQQEYT-WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF 75
             D E V+E      + YT W    F   P      +++F T   P NFLKG KW+PDGS  
Sbjct:   119 DVEGVSEELTPEDEGYTIWNY-NFSQVPRFLSGSWSEFITQ--PENFLKGCKWAPDGSCI 175

Query:    76 LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135
             LT+S D  LRI++LP     Y+        +       L + EG+++YD+CW+  MS++ 
Sbjct:   176 LTNSADNILRIYNLPPE--LYNEGE---QLEYAEMAPVLRMVEGDTIYDYCWYSLMSSAQ 230

Query:   136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS 195
             P +   AS++R++PIH+WDA TG LR ++R+Y+ +DE+TAA S+ F+P G+++F G+N++
Sbjct:   231 PDTSYVASSSRENPIHIWDAFTGELRASFRSYNHLDELTAAHSLCFSPDGSQLFCGFNRT 290

Query:   196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255
             VRVF   RPGRD E  +T    ++GQ+GI+S IAFSPT   + A GSY ++  +Y  ++ 
Sbjct:   291 VRVFSTSRPGRDCEVRTTF-AKRQGQSGIISCIAFSPTQP-LYACGSYGRSLGLYTWEDG 348

Query:   256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
               L +L G +GG+TH+ F  DGN  ++G RKD  +LCWDLR+
Sbjct:   349 SPLALLGGHQGGITHLCFHPDGNCFFSGARKDAELLCWDLRQ 390

GO:0015030 "Cajal body" evidence=ISS

GO:0032203 "telomere formation via telomerase" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0005697 "telomerase holoenzyme complex" evidence=ISS

GO:0051973 "positive regulation of telomerase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0031782 WDR79 "WD repeat domain 79 homolog" [Drosophila melanogaster (taxid:7227)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 85/252 (33%), Positives = 134/252 (53%)

Query:    55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114
             +S+   ++ KG  WSPDG+  L       + +  +P +   Y  +    A+     ++ +
Sbjct:   177 SSTEAQHYTKGCYWSPDGTCLLVPVHLDGMHVIEMPSD--LYSADTVQPARSLTKLQSEV 234

Query:   115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEIT 174
              V EG +VYD  W+PHM++  P +C++ +T +  PIH+WDA  G LRC+Y  YDAVDE+ 
Sbjct:   235 HVPEGGTVYDCVWYPHMNSLQPETCLWLATRQHEPIHMWDAFDGSLRCSYSGYDAVDEVM 294

Query:   175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH 234
             AA S+AF+  G +I+AGY + +++FD  RPGR  + Y             +S IA +  H
Sbjct:   295 AAISLAFSHDGEQIYAGYKRCIKIFDTSRPGRFCDDYPVKFA--------ISCIAQTTAH 346

Query:   235 TGMLAIGS---YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN---YLYTGGRKDP 288
                L  G+   Y Q   +        L+ L G +GG+T +++   GN   +L++G RK  
Sbjct:   347 PHTLTCGNWHGYIQHFDLRCSHKQGPLFTLGGHKGGITQLRYGEFGNGEWHLFSGARKCD 406

Query:   289 YILCWDLRKAVQ 300
              IL WD+R   Q
Sbjct:   407 KILQWDMRNYKQ 418

GO:0019001 "guanyl nucleotide binding" evidence=ISS

GO:0034512 "box C/D snoRNA binding" evidence=IDA

POMBASE|SPCC1020.09 gnr1 "heterotrimeric G protein beta subunit Gnr1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 73/252 (28%), Positives = 116/252 (46%)

Query:    59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE 118
             P NF    +WSPDGS+ L+ +ED+ L  +++P + +S   +         SY+       
Sbjct:    45 PLNFFHSSRWSPDGSTILSLTEDQCLNCWNVPFSDLSKKADGPLNFSKHLSYKYQ----S 100

Query:   119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS 178
              E+VY + W+  M   DP+S +FA ++RD PI L + TTG  + +Y   D  +    +  
Sbjct:   101 PETVYSYSWYSRMKLDDPSSNLFAVSSRDQPIKLINFTTGKNKASYHMIDHQERYQGSHC 160

Query:   179 VAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE-----GQAGIMSAIAFSPT 233
             + F   G  + AG    +  F++    ++    +   G K         GI S  + +P 
Sbjct:   161 LQFTNDGEYLIAGDKNCLHHFNIRTGCKEPVMTTVTHGYKVPLWEFSLKGIQSCFSLNPM 220

Query:   234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQE--GGVTHVQFSRDGNYLYTGGRKDPYIL 291
              +  LA+G+YS    IY +       +    E   GVTH+Q+  DG  LY G R    I 
Sbjct:   221 DSKTLAVGTYSNRVGIYNDCGRRPCQLEFSIERGNGVTHLQWCEDGEKLYVGSRCSDKIE 280

Query:   292 CWDLRKAVQVVY 303
              WD+R    +VY
Sbjct:   281 VWDIRYVRDMVY 292

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=IPI

GO:0045744 "negative regulation of G-protein coupled receptor protein signaling pathway" evidence=IMP

GO:0090029 "negative regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion" evidence=IMP

GO:0004871 "signal transducer activity" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	304
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-07
smart00320	40	smart00320, WD40, WD40 repeats	7e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002
smart00320	40	smart00320, WD40, WD40 repeats	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 84.3 bits (209), Expect = 7e-19
 Identities = 63/251 (25%), Positives = 102/251 (40%), Gaps = 40/251 (15%)

Query: 52  QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE 111
             RT       ++ +  S DG+   + S DKT+R++ L                 +    
Sbjct: 43  LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL-----------------ETGEC 85

Query: 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD 171
              +      V    + P          + +S++RD  I +WD  TG  +C        D
Sbjct: 86  VRTLTGHTSYVSSVAFSPDGR-------ILSSSSRDKTIKVWDVETG--KCLTTLRGHTD 136

Query: 172 EITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF 230
            +    SVAF+P GT + +   + +++++D+    R  +  +TL G+     G ++++AF
Sbjct: 137 WVN---SVAFSPDGTFVASSSQDGTIKLWDL----RTGKCVATLTGHT----GEVNSVAF 185

Query: 231 SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290
           SP     L   S   T  ++     + L  L G E GV  V FS DG  L   G +D  I
Sbjct: 186 SPD-GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL-ASGSEDGTI 243

Query: 291 LCWDLRKAVQV 301
             WDLR    V
Sbjct: 244 RVWDLRTGECV 254

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 83.2 bits (206), Expect = 2e-18
 Identities = 60/237 (25%), Positives = 92/237 (38%), Gaps = 40/237 (16%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + +SPDG    T S D T++++ L                +      +L    G  V D 
Sbjct: 15  VAFSPDGKLLATGSGDGTIKVWDL----------------ETGELLRTLKGHTG-PVRDV 57

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
                           AS + D  I LWD  TG    T   +     +    SVAF+P G
Sbjct: 58  AASAD-------GTYLASGSSDKTIRLWDLETGECVRTLTGHT--SYV---SSVAFSPDG 105

Query: 186 TKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
             + +   +K+++V+DV       +  +TL+G+      + S +AFSP  T  +A  S  
Sbjct: 106 RILSSSSRDKTIKVWDV----ETGKCLTTLRGH---TDWVNS-VAFSPDGT-FVASSSQD 156

Query: 245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301
            T  ++     + +  L G  G V  V FS DG  L +    D  I  WDL     +
Sbjct: 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCL 212

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 76.3 bits (186), Expect = 2e-15
 Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 39/232 (16%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127
           +SPDGS   + S D T+R++ L  +       +                    SV    +
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS----------------GHSSSVLSVAF 292

Query: 128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK 187
                   P   + AS + D  + LWD  TG L  +         ++   S++F+P G+ 
Sbjct: 293 -------SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS---SLSFSPDGSL 342

Query: 188 IFAGY--NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ 245
           + +G   + ++R++D+        +        EG + ++S ++FSP    +++ GS   
Sbjct: 343 LVSGGSDDGTIRLWDL--------RTGKPLKTLEGHSNVLS-VSFSP-DGRVVSSGSTDG 392

Query: 246 TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
           T  ++      LL  L G    VT + FS DG  L +G   D  I  WDL+ 
Sbjct: 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS-SDNTIRLWDLKT 443

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.9 bits (182), Expect = 4e-15
 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 39/221 (17%)

Query: 65  GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124
            + +SPDG    +SS DKT++++ +        +   +                 + V  
Sbjct: 98  SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT-----------------DWVNS 140

Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT 184
             +        P     AS+++D  I LWD  TG  +C         E+    SVAF+P 
Sbjct: 141 VAF-------SPDGTFVASSSQDGTIKLWDLRTG--KCVATLTGHTGEVN---SVAFSPD 188

Query: 185 GTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
           G K+  +  + +++++D+       +   TL+G++ G   + S +AFSP    +LA GS 
Sbjct: 189 GEKLLSSSSDGTIKLWDL----STGKCLGTLRGHENG---VNS-VAFSP-DGYLLASGSE 239

Query: 244 SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284
             T  ++     E +  L G    VT + +S DG  L +G 
Sbjct: 240 DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 69.7 bits (169), Expect = 2e-13
 Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 40/253 (15%)

Query: 54  RTSSIPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEA 112
           RT    +  +  + +SPDG    + S  D T++++ L                 +     
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL-----------------RTGKPL 191

Query: 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE 172
           S +    + V    + P          + AS + D  I LWD +TG L  +  +  +   
Sbjct: 192 STLAGHTDPVSSLAFSPDG------GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245

Query: 173 ITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS 231
           ++     +F+P G+ +     + ++R++D+           TL G+       + ++AFS
Sbjct: 246 VS-----SFSPDGSLLASGSSDGTIRLWDLR---SSSSLLRTLSGHSSS----VLSVAFS 293

Query: 232 PTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDPY 289
           P    +LA GS   T  ++  +  +LL  L   G EG V+ + FS DG+ L +GG  D  
Sbjct: 294 PDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352

Query: 290 ILCWDLRKAVQVV 302
           I  WDLR    + 
Sbjct: 353 IRLWDLRTGKPLK 365

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 11/126 (8%)

Query: 177 FSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235
             VAF+P G  +  G  + +++V+D+       E   TLKG+     G +  +A S    
Sbjct: 13  TCVAFSPDGKLLATGSGDGTIKVWDLE----TGELLRTLKGHT----GPVRDVAASA-DG 63

Query: 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
             LA GS  +T  ++  +  E +  L G    V+ V FS DG  L +  R D  I  WD+
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR-DKTIKVWDV 122

Query: 296 RKAVQV 301
                +
Sbjct: 123 ETGKCL 128

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.3 bits (155), Expect = 1e-11
 Identities = 60/277 (21%), Positives = 94/277 (33%), Gaps = 55/277 (19%)

Query: 55  TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN---------------------- 92
                 + +  I +SPDG   L+ S D T++++ L                         
Sbjct: 60  LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119

Query: 93  ---------GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143
                      S D                 +    ESV    + P          + + 
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD------GKLLASG 173

Query: 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA--GYNKSVRVFDV 201
           ++ D  I LWD  TG    T   +          S+AF+P G  + A    + ++R++D+
Sbjct: 174 SSLDGTIKLWDLRTGKPLSTLAGHTDP-----VSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Query: 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR-EDNMELLYV 260
                     STL G+ +         +FSP  + +LA GS   T  ++    +  LL  
Sbjct: 229 STG---KLLRSTLSGHSDS-----VVSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRT 279

Query: 261 LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
           L G    V  V FS DG  L +G   D  +  WDL  
Sbjct: 280 LSGHSSSVLSVAFSPDGKLLASGS-SDGTVRLWDLET 315

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 60.1 bits (144), Expect = 4e-10
 Identities = 48/242 (19%), Positives = 84/242 (34%), Gaps = 17/242 (7%)

Query: 56  SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV 115
           S+   N  K +K         + +    L + S     +   + + SL    D     L 
Sbjct: 6   STSSENKSKLLK---KSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLR 62

Query: 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITA 175
             E  S+    +        P   +  S + D  I LWD   G      ++ + + + + 
Sbjct: 63  GHED-SITSIAF-------SPDGELLLSGSSDGTIKLWDLDNG--EKLIKSLEGLHDSSV 112

Query: 176 AFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235
           +     +P G  I    +       +       +   TL+G+ E     ++++AFSP   
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE----SVTSLAFSPDGK 168

Query: 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
            + +  S   T  ++     + L  L G    V+ + FS DG  L   G  D  I  WDL
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Query: 296 RK 297
             
Sbjct: 229 ST 230

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 30/148 (20%)

Query: 54  RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113
            T +     +  + +SPDG   L+SS D T+++         +D++          +E  
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL---------WDLSTGKCLGTLRGHENG 221

Query: 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173
           +             F       P   + AS + D  I +WD  TG    T   +      
Sbjct: 222 VN---------SVAF------SPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN---- 262

Query: 174 TAAFSVAFNPTGTKIFAGY-NKSVRVFD 200
            +  S+A++P G ++ +G  + ++R++D
Sbjct: 263 -SVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278
           +G  G ++ +AFSP    +LA GS   T  ++  +  ELL  L G  G V  V  S DG 
Sbjct: 6   KGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64

Query: 279 YLYTGGRKDPYILCWDLRK 297
           YL +G   D  I  WDL  
Sbjct: 65  YLASGS-SDKTIRLWDLET 82

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 254 NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294
           + ELL  L G  G VT V FS DG YL +G   D  I  WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSD-DGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294
            +LL  L G  G VT V FS DGN L +G   D  +  WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSD-DGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFS 88
          RT       +  + +SPDG+   + S+D T+R++ 
Sbjct: 5  RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.2 bits (79), Expect = 0.004
 Identities = 8/35 (22%), Positives = 18/35 (51%)

Query: 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFS 88
          +T       +  + +SPDG    + S+D T++++ 
Sbjct: 6  KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	304
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
PTZ00420	568	coronin; Provisional	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.91
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.89
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.89
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.88
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.88
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG2048	691	consensus WD40 repeat protein [General function pr	99.87
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.87
KOG2055	514	consensus WD40 repeat protein [General function pr	99.87
KOG1539	910	consensus WD repeat protein [General function pred	99.87
KOG2055	514	consensus WD40 repeat protein [General function pr	99.86
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.86
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.86
KOG4328	498	consensus WD40 protein [Function unknown]	99.86
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.86
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.85
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.85
KOG1310	758	consensus WD40 repeat protein [General function pr	99.85
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.84
KOG1188	376	consensus WD40 repeat protein [General function pr	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.83
KOG1274	933	consensus WD40 repeat protein [General function pr	99.83
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.83
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.83
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.82
KOG2096	420	consensus WD40 repeat protein [General function pr	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.82
KOG4227	609	consensus WD40 repeat protein [General function pr	99.82
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.8
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.8
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.79
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.78
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
PRK01742	429	tolB translocation protein TolB; Provisional	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.77
KOG0649	325	consensus WD40 repeat protein [General function pr	99.76
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.76
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.75
KOG2139	445	consensus WD40 repeat protein [General function pr	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.74
COG2319	466	FOG: WD40 repeat [General function prediction only	99.73
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.72
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.72
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.72
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.71
COG2319	466	FOG: WD40 repeat [General function prediction only	99.71
KOG2321	703	consensus WD40 repeat protein [General function pr	99.71
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.7
PRK03629	429	tolB translocation protein TolB; Provisional	99.7
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.69
PRK04922	433	tolB translocation protein TolB; Provisional	99.68
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.68
PRK05137	435	tolB translocation protein TolB; Provisional	99.67
KOG1963	792	consensus WD40 repeat protein [General function pr	99.67
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.67
KOG4227	609	consensus WD40 repeat protein [General function pr	99.66
PRK02889	427	tolB translocation protein TolB; Provisional	99.65
KOG1963	792	consensus WD40 repeat protein [General function pr	99.65
KOG2139	445	consensus WD40 repeat protein [General function pr	99.64
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.64
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.63
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.63
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.63
PRK01742	429	tolB translocation protein TolB; Provisional	99.63
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.63
KOG4547	541	consensus WD40 repeat-containing protein [General	99.62
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.61
KOG1334	559	consensus WD40 repeat protein [General function pr	99.6
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.6
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.58
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.56
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.56
PRK01029	428	tolB translocation protein TolB; Provisional	99.55
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.55
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.55
PRK00178	430	tolB translocation protein TolB; Provisional	99.54
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.54
PRK02889	427	tolB translocation protein TolB; Provisional	99.54
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.54
PRK04792	448	tolB translocation protein TolB; Provisional	99.53
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.53
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.53
KOG2321	703	consensus WD40 repeat protein [General function pr	99.52
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.52
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.51
KOG1310	758	consensus WD40 repeat protein [General function pr	99.51
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.5
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.5
PRK04922	433	tolB translocation protein TolB; Provisional	99.49
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.47
PRK03629	429	tolB translocation protein TolB; Provisional	99.46
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.46
KOG2315	566	consensus Predicted translation initiation factor	99.45
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.43
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.4
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.4
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.39
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.37
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.36
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.34
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.34
PRK04792	448	tolB translocation protein TolB; Provisional	99.33
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.3
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.3
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.3
PRK00178	430	tolB translocation protein TolB; Provisional	99.29
KOG4547	541	consensus WD40 repeat-containing protein [General	99.28
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.28
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.24
PRK04043	419	tolB translocation protein TolB; Provisional	99.23
COG4946	668	Uncharacterized protein related to the periplasmic	99.22
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.21
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.2
PRK01029	428	tolB translocation protein TolB; Provisional	99.17
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.17
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.16
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.15
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.12
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.12
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.1
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.1
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.09
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.09
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.08
KOG2695	425	consensus WD40 repeat protein [General function pr	99.05
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.03
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.99
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.98
KOG1334	559	consensus WD40 repeat protein [General function pr	98.97
KOG2314	698	consensus Translation initiation factor 3, subunit	98.96
COG4946	668	Uncharacterized protein related to the periplasmic	98.96
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.96
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.95
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.95
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.95
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.93
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.92
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.92
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.92
KOG2315	566	consensus Predicted translation initiation factor	98.91
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.89
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.88
KOG2695	425	consensus WD40 repeat protein [General function pr	98.88
PRK04043	419	tolB translocation protein TolB; Provisional	98.87
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.85
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.85
KOG2314	698	consensus Translation initiation factor 3, subunit	98.85
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.84
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.81
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.77
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.75
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.71
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.68
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.68
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.66
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.64
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.64
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.63
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.61
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.61
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.61
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.6
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.54
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.54
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.51
PRK02888	635	nitrous-oxide reductase; Validated	98.51
COG3391	381	Uncharacterized conserved protein [Function unknow	98.5
KOG2395	644	consensus Protein involved in vacuole import and d	98.48
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.45
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.45
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.44
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.43
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.42
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.41
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.37
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.36
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.24
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.24
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.22
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.2
PRK02888	635	nitrous-oxide reductase; Validated	98.18
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.16
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.16
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.15
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.15
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.15
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.13
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.12
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.06
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.04
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.04
KOG3621	726	consensus WD40 repeat-containing protein [General	98.04
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.03
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.02
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.99
KOG3621	726	consensus WD40 repeat-containing protein [General	97.97
COG3391	381	Uncharacterized conserved protein [Function unknow	97.96
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.96
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.95
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.92
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.86
PRK13616	591	lipoprotein LpqB; Provisional	97.82
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.8
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.77
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.68
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.67
KOG2444	238	consensus WD40 repeat protein [General function pr	97.6
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.58
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.55
KOG2395	644	consensus Protein involved in vacuole import and d	97.52
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.52
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.48
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.47
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.47
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.45
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.45
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.44
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.4
COG5167	776	VID27 Protein involved in vacuole import and degra	97.39
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.38
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.38
PHA02713	557	hypothetical protein; Provisional	97.37
PRK13616	591	lipoprotein LpqB; Provisional	97.35
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.31
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.3
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.29
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.2
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.19
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.13
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.13
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.04
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.04
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.95
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.91
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.84
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.83
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.8
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.75
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.7
PHA03098	534	kelch-like protein; Provisional	96.65
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.62
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.62
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.61
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.6
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.59
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.56
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.54
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.53
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.46
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.38
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.37
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.28
PRK13684	334	Ycf48-like protein; Provisional	96.23
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.23
KOG2247	615	consensus WD40 repeat-containing protein [General	96.23
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.21
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	96.02
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.0
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.95
KOG2444	238	consensus WD40 repeat protein [General function pr	95.89
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.79
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.78
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.7
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.64
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.58
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.56
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.51
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.43
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.41
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	95.34
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.17
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.11
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.09
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.04
PHA02790	480	Kelch-like protein; Provisional	95.03
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	95.01
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.96
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	94.93
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.82
PHA02713	557	hypothetical protein; Provisional	94.74
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.7
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.67
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.66
PRK13684	334	Ycf48-like protein; Provisional	94.55
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.43
PRK10115	686	protease 2; Provisional	94.42
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.31
PHA03098	534	kelch-like protein; Provisional	94.26
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.18
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.03
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.91
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.88
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.58
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.4
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	93.21
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.96
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.95
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.78
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.65
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	92.37
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.31
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.28
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.25
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.91
PF12768	281	Rax2: Cortical protein marker for cell polarity	91.89
PHA02790	480	Kelch-like protein; Provisional	91.77
PRK10115	686	protease 2; Provisional	91.76
COG5276	370	Uncharacterized conserved protein [Function unknow	91.52
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.03
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.83
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	90.77
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.33
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.02
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	89.4
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	88.97
COG4590	733	ABC-type uncharacterized transport system, permeas	88.85
COG5167	776	VID27 Protein involved in vacuole import and degra	88.85
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.82
KOG2247	615	consensus WD40 repeat-containing protein [General	88.58
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	88.57
KOG3616	1636	consensus Selective LIM binding factor [Transcript	88.42
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	88.21
PF14727	418	PHTB1_N: PTHB1 N-terminus	88.01
KOG2377	657	consensus Uncharacterized conserved protein [Funct	87.85
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	87.65
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	87.64
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	87.3
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	87.14
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	86.9
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	86.64
PLN02153	341	epithiospecifier protein	86.04
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	86.02
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	86.0
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	85.85
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	85.35
PF12768	281	Rax2: Cortical protein marker for cell polarity	84.73
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	84.45
PLN02193	470	nitrile-specifier protein	84.14
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	83.64
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	83.44
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	83.29
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	83.11
TIGR03054	135	photo_alph_chp1 putative photosynthetic complex as	83.06

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.4e-41  Score=256.96  Aligned_cols=224  Identities=21%  Similarity=0.316  Sum_probs=195.5

Q ss_pred             cHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccc
Q 022019           22 TEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC  101 (304)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~  101 (304)
                      ..+++.|...++|.     ......+      ..+.+|...|..++|+|+|++|+|++.|.+-++||+.++....     
T Consensus       234 lat~s~Dgtvklw~-----~~~e~~l------~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL-----  297 (459)
T KOG0272|consen  234 LATASADGTVKLWK-----LSQETPL------QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL-----  297 (459)
T ss_pred             eeeeccCCceeeec-----cCCCcch------hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhH-----
Confidence            44556666666654     3443333      3788999999999999999999999999999999998765432     


Q ss_pred             cccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEE
Q 022019          102 SLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF  181 (304)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~  181 (304)
                                  ...+|...|++++|       .+||.++++|+.|..-+|||+++|.++..+..|..     +|.+++|
T Consensus       298 ------------~QEGHs~~v~~iaf-------~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-----~I~~V~f  353 (459)
T KOG0272|consen  298 ------------LQEGHSKGVFSIAF-------QPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-----EILSVAF  353 (459)
T ss_pred             ------------hhcccccccceeEe-------cCCCceeeccCccchhheeecccCcEEEEeccccc-----ceeeEeE
Confidence                        33456689999988       77999999999999999999999999999987765     9999999


Q ss_pred             CCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEE
Q 022019          182 NPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV  260 (304)
Q Consensus       182 ~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~  260 (304)
                      +|+|..+++| .|++++|||++...        ......+|...|+.++|+|..+.+|++++.|++++||..+++.++.+
T Consensus       354 sPNGy~lATgs~Dnt~kVWDLR~r~--------~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ks  425 (459)
T KOG0272|consen  354 SPNGYHLATGSSDNTCKVWDLRMRS--------ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKS  425 (459)
T ss_pred             CCCceEEeecCCCCcEEEeeecccc--------cceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchh
Confidence            9999999976 99999999999732        23334889999999999998899999999999999999999999999


Q ss_pred             eccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          261 LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       261 ~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      +.||++.|.++..+||+.++++++ .|.++++|.
T Consensus       426 LaGHe~kV~s~Dis~d~~~i~t~s-~DRT~KLW~  458 (459)
T KOG0272|consen  426 LAGHEGKVISLDISPDSQAIATSS-FDRTIKLWR  458 (459)
T ss_pred             hcCCccceEEEEeccCCceEEEec-cCceeeecc
Confidence            999999999999999999999999 999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-39  Score=244.06  Aligned_cols=235  Identities=20%  Similarity=0.376  Sum_probs=195.0

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..||+....+..      +.++|...|.|++|+|||+.||+|+.||+|++||.++++...                ..
T Consensus       138 TvR~WD~~TeTp~~------t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g----------------~~  195 (480)
T KOG0271|consen  138 TVRLWDLDTETPLF------TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG----------------RA  195 (480)
T ss_pred             eEEeeccCCCCcce------eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc----------------cc
Confidence            45567766665554      789999999999999999999999999999999998765432                24


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  193 (304)
                      +.+|...|++++|.|...  .|..++|++++.||.|+|||+..+.++..+..|..     +|+|+.|--+| +|++| .|
T Consensus       196 l~gH~K~It~Lawep~hl--~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-----~VTCvrwGG~g-liySgS~D  267 (480)
T KOG0271|consen  196 LRGHKKWITALAWEPLHL--VPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-----SVTCVRWGGEG-LIYSGSQD  267 (480)
T ss_pred             ccCcccceeEEeeccccc--CCCccceecccCCCCEEEEEccCceEEEEeccCcc-----ceEEEEEcCCc-eEEecCCC
Confidence            556778999999999755  67888999999999999999999999988887776     99999997654 55554 99


Q ss_pred             CeEEEEEcCCCC--------------------------------cccee-------------------------------
Q 022019          194 KSVRVFDVHRPG--------------------------------RDFEK-------------------------------  210 (304)
Q Consensus       194 ~~i~v~d~~~~~--------------------------------~~~~~-------------------------------  210 (304)
                      ++|++|+...+.                                ...+.                               
T Consensus       268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t  347 (480)
T KOG0271|consen  268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT  347 (480)
T ss_pred             ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence            999999875421                                00000                               


Q ss_pred             --------eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEE
Q 022019          211 --------YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT  282 (304)
Q Consensus       211 --------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  282 (304)
                              .........+|...|..+.|+| +++++++++.|..|++||.++|+-+.+|++|-..|+.++|+.|.+.|++
T Consensus       348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS  426 (480)
T KOG0271|consen  348 LFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS  426 (480)
T ss_pred             EEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence                    0001123467888899999999 8889999999999999999999999999999999999999999999999


Q ss_pred             eeccCCeEEEEecccceee
Q 022019          283 GGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       283 ~~~~d~~i~vwd~~~~~~~  301 (304)
                      |+ .|.++++|++++.+..
T Consensus       427 ~S-kDsTLKvw~V~tkKl~  444 (480)
T KOG0271|consen  427 GS-KDSTLKVWDVRTKKLK  444 (480)
T ss_pred             cC-CCceEEEEEeeeeeec
Confidence            99 9999999999987643

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.5e-37  Score=226.73  Aligned_cols=256  Identities=14%  Similarity=0.191  Sum_probs=196.0

Q ss_pred             HHHHhhcCCCchhhcHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEe
Q 022019            8 QTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIF   87 (304)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vw   87 (304)
                      +++++++.+++...+........+.....+.-++.+..... .+..++++||.+.|.++.|++|.+++++++.||.+.||
T Consensus         4 ~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~~~~i~-~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvW   82 (343)
T KOG0286|consen    4 LEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLESVGRIQ-MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVW   82 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccHHHHhhccccceeee-eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEE
Confidence            34455555555555555444433332211112222222222 34457999999999999999999999999999999999


Q ss_pred             eCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCC------eee
Q 022019           88 SLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG------LLR  161 (304)
Q Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~  161 (304)
                      |.-+......+..                 ...-|..++|       +|.|+++|+|+-|....||++.+.      ...
T Consensus        83 Ds~TtnK~haipl-----------------~s~WVMtCA~-------sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~  138 (343)
T KOG0286|consen   83 DSFTTNKVHAIPL-----------------PSSWVMTCAY-------SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVS  138 (343)
T ss_pred             EcccccceeEEec-----------------CceeEEEEEE-------CCCCCeEEecCcCceeEEEecccccccccceee
Confidence            9876543322221                 1244555555       889999999999999999999854      223


Q ss_pred             EEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEE
Q 022019          162 CTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG  241 (304)
Q Consensus       162 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  241 (304)
                      ..+..|.     ..+.++.|-+|+..|.++.|.+..+||++++        .....+.+|.+.|.+++++|.+++.+++|
T Consensus       139 r~l~gHt-----gylScC~f~dD~~ilT~SGD~TCalWDie~g--------~~~~~f~GH~gDV~slsl~p~~~ntFvSg  205 (343)
T KOG0286|consen  139 RELAGHT-----GYLSCCRFLDDNHILTGSGDMTCALWDIETG--------QQTQVFHGHTGDVMSLSLSPSDGNTFVSG  205 (343)
T ss_pred             eeecCcc-----ceeEEEEEcCCCceEecCCCceEEEEEcccc--------eEEEEecCCcccEEEEecCCCCCCeEEec
Confidence            3444444     4888999988776666679999999999884        22333479999999999999888899999


Q ss_pred             ecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          242 SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       242 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      +-|+..++||++.+.++++|.+|+..|+++.|.|+|.-+++|+ +|++.++||++..+++.
T Consensus       206 ~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS-DD~tcRlyDlRaD~~~a  265 (343)
T KOG0286|consen  206 GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS-DDATCRLYDLRADQELA  265 (343)
T ss_pred             ccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC-CCceeEEEeecCCcEEe
Confidence            9999999999999999999999999999999999999999999 99999999999987764

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.1e-39  Score=246.30  Aligned_cols=210  Identities=22%  Similarity=0.313  Sum_probs=183.2

Q ss_pred             eeeecCCCCceeEEEEcCC--CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           53 FRTSSIPNNFLKGIKWSPD--GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      +..+.+|.+.|.++.|+|.  +..+|||+.||++++|++.+......                 ..+|...|..++|   
T Consensus       210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~-----------------l~gH~~RVs~Vaf---  269 (459)
T KOG0272|consen  210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD-----------------LEGHLARVSRVAF---  269 (459)
T ss_pred             eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh-----------------hhcchhhheeeee---
Confidence            4489999999999999995  66899999999999999986544332                 3345577888877   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                          +|+|++|++++.|.+-++||++++......++|..     .|.+++|+|||.++++| .|..-+|||+|++.    
T Consensus       270 ----HPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~-----~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr----  336 (459)
T KOG0272|consen  270 ----HPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSK-----GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR----  336 (459)
T ss_pred             ----cCCCceeeecccccchhhcccccchhhHhhccccc-----ccceeEecCCCceeeccCccchhheeecccCc----
Confidence                77999999999999999999999987777776665     99999999999999965 99999999999852    


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECC-CCcEEEEeeccCC
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR-DGNYLYTGGRKDP  288 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~d~  288 (304)
                      .+..    +.+|..+|.+++|+| +|..|++|+.|++++|||++...++.++.+|..-|+.+.|+| .|.+|+|++ .|+
T Consensus       337 ~im~----L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas-yD~  410 (459)
T KOG0272|consen  337 CIMF----LAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS-YDN  410 (459)
T ss_pred             EEEE----ecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc-cCc
Confidence            2222    277999999999999 899999999999999999999999999999999999999999 788999999 999


Q ss_pred             eEEEEecccceee
Q 022019          289 YILCWDLRKAVQV  301 (304)
Q Consensus       289 ~i~vwd~~~~~~~  301 (304)
                      ++++|...+..++
T Consensus       411 t~kiWs~~~~~~~  423 (459)
T KOG0272|consen  411 TVKIWSTRTWSPL  423 (459)
T ss_pred             ceeeecCCCcccc
Confidence            9999999887554

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.2e-38  Score=258.87  Aligned_cols=208  Identities=28%  Similarity=0.428  Sum_probs=185.5

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      .+.+.||.++|....|+|+.++|++|+.|+++|+|.+.+...                 .....+|..+|+++.|     
T Consensus       444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~-----------------~V~y~GH~~PVwdV~F-----  501 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC-----------------LVIYKGHLAPVWDVQF-----  501 (707)
T ss_pred             eEEeecCCCceeeeeecccccceeeccCCcceeeeeccccee-----------------EEEecCCCcceeeEEe-----
Confidence            446889999999999999999999999999999999985432                 2244577789999988     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                        +|-|-+||+++.|++.++|......+.+.+..|..     .|.|+.|+|+..++++| .|.+|++||+.++.      
T Consensus       502 --~P~GyYFatas~D~tArLWs~d~~~PlRifaghls-----DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~------  568 (707)
T KOG0263|consen  502 --APRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS-----DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN------  568 (707)
T ss_pred             --cCCceEEEecCCCceeeeeecccCCchhhhccccc-----ccceEEECCcccccccCCCCceEEEEEcCCCc------
Confidence              66788999999999999999998888888887765     89999999999999977 99999999998742      


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                        ....+.||.++|.+++|+| .|++|++|+.||.|++||+.+++++..+.+|.+.|.++.|+.+|..|++|| .|++|+
T Consensus       569 --~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg-~DnsV~  644 (707)
T KOG0263|consen  569 --SVRIFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG-ADNSVR  644 (707)
T ss_pred             --EEEEecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC-CCCeEE
Confidence              2233378999999999999 899999999999999999999999999999999999999999999999999 999999


Q ss_pred             EEecccce
Q 022019          292 CWDLRKAV  299 (304)
Q Consensus       292 vwd~~~~~  299 (304)
                      +||+....
T Consensus       645 lWD~~~~~  652 (707)
T KOG0263|consen  645 LWDLTKVI  652 (707)
T ss_pred             EEEchhhc
Confidence            99997643

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.1e-38  Score=236.36  Aligned_cols=211  Identities=23%  Similarity=0.378  Sum_probs=170.2

Q ss_pred             ceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      +....+.||.++|.|++|+|+|..|+||+.|.++|+||+.+.....                 ...+|..-|.+++|   
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~-----------------t~KgH~~WVlcvaw---  165 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF-----------------TCKGHKNWVLCVAW---  165 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce-----------------eecCCccEEEEEEE---
Confidence            4555889999999999999999999999999999999998764432                 34456688999998   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCeee-EEeecccccccccceEEEEECC-----CCcEEEEE-cCCeEEEEEcCC
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLR-CTYRAYDAVDEITAAFSVAFNP-----TGTKIFAG-YNKSVRVFDVHR  203 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~i~~~~-----~~~~l~~~-~d~~i~v~d~~~  203 (304)
                          +|||+.||+|+.||+|++||.++|+.. ..+..|..     .|++++|.|     ..++++++ .||.|+|||+..
T Consensus       166 ----sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K-----~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~  236 (480)
T KOG0271|consen  166 ----SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKK-----WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL  236 (480)
T ss_pred             ----CCCcchhhccccCCeEEEecCCCCCcccccccCccc-----ceeEEeecccccCCCccceecccCCCCEEEEEccC
Confidence                889999999999999999999988765 44555554     999999976     45788854 999999999976


Q ss_pred             CCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc----------------------------
Q 022019          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM----------------------------  255 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~----------------------------  255 (304)
                      +        .......+|..+|+|+.|-.  ..+|++|+.|++|++|+...+                            
T Consensus       237 ~--------~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtga  306 (480)
T KOG0271|consen  237 G--------TCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGA  306 (480)
T ss_pred             c--------eEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccc
Confidence            2        22223367888888888864  337778888888888865432                            


Q ss_pred             ---------------------------------------------------eEeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          256 ---------------------------------------------------ELLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       256 ---------------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                                                                         +++..+.+|..-|+.+.||||+++|++++
T Consensus       307 f~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS  386 (480)
T KOG0271|consen  307 FDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS  386 (480)
T ss_pred             cccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee
Confidence                                                               23334557888899999999999999999


Q ss_pred             ccCCeEEEEecccceee
Q 022019          285 RKDPYILCWDLRKAVQV  301 (304)
Q Consensus       285 ~~d~~i~vwd~~~~~~~  301 (304)
                       .|..|++|+.++|+.+
T Consensus       387 -FDkSVkLW~g~tGk~l  402 (480)
T KOG0271|consen  387 -FDKSVKLWDGRTGKFL  402 (480)
T ss_pred             -cccceeeeeCCCcchh
Confidence             9999999999999765

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-37  Score=224.15  Aligned_cols=236  Identities=21%  Similarity=0.351  Sum_probs=190.0

Q ss_pred             hhcHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccc
Q 022019           20 EVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVN   99 (304)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~   99 (304)
                      +...+++.++..-.|.     +... ...+-...+.+.||...|..+..++||+++++++.|+++++||+.+++      
T Consensus        29 ~~l~sasrDk~ii~W~-----L~~d-d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~------   96 (315)
T KOG0279|consen   29 DILVSASRDKTIIVWK-----LTSD-DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE------   96 (315)
T ss_pred             ceEEEcccceEEEEEE-----eccC-ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc------
Confidence            3344455555555554     3322 222334556889999999999999999999999999999999998642      


Q ss_pred             cccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEE
Q 022019          100 ACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSV  179 (304)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i  179 (304)
                                 ....+.+|...|.++++       ++|.+.+++|+.|++|++|+...+ +..++....   +...|.++
T Consensus        97 -----------~t~~f~GH~~dVlsva~-------s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~---~~~WVscv  154 (315)
T KOG0279|consen   97 -----------STRRFVGHTKDVLSVAF-------STDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDS---HREWVSCV  154 (315)
T ss_pred             -----------EEEEEEecCCceEEEEe-------cCCCceeecCCCcceeeeeeeccc-EEEEEecCC---CcCcEEEE
Confidence                       23467788899999977       889999999999999999998754 333333322   13489999


Q ss_pred             EECCC--CcEEE-EEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce
Q 022019          180 AFNPT--GTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (304)
Q Consensus       180 ~~~~~--~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~  256 (304)
                      .|+|+  ..+|+ +|.|++|++||++.        ..+.....+|.+.++.++++| +|.++++|+.||.+.+||++.++
T Consensus       155 rfsP~~~~p~Ivs~s~DktvKvWnl~~--------~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k  225 (315)
T KOG0279|consen  155 RFSPNESNPIIVSASWDKTVKVWNLRN--------CQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGK  225 (315)
T ss_pred             EEcCCCCCcEEEEccCCceEEEEccCC--------cchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCc
Confidence            99998  56777 56999999999987        556666688999999999999 78899999999999999999999


Q ss_pred             EeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          257 LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       257 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      .+.++. |...|.+++|+|+..+|+.+.  +..|+|||+.++..+
T Consensus       226 ~lysl~-a~~~v~sl~fspnrywL~~at--~~sIkIwdl~~~~~v  267 (315)
T KOG0279|consen  226 NLYSLE-AFDIVNSLCFSPNRYWLCAAT--ATSIKIWDLESKAVV  267 (315)
T ss_pred             eeEecc-CCCeEeeEEecCCceeEeecc--CCceEEEeccchhhh
Confidence            988886 788999999999988887765  667999999988765

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.4e-36  Score=215.89  Aligned_cols=231  Identities=22%  Similarity=0.265  Sum_probs=188.7

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..+|+......    +...+.+|++.|+.+.|..+|++++||+.||+++|||++....                  .-
T Consensus        62 hvRlyD~~S~np~----Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~------------------qR  119 (311)
T KOG0315|consen   62 HVRLYDLNSNNPN----PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC------------------QR  119 (311)
T ss_pred             eeEEEEccCCCCC----ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc------------------ch
Confidence            3445555544332    3458899999999999999999999999999999999985322                  13


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  193 (304)
                      .+.+..+|.++..       +|+...|++|..+|.|++||+....+...+.....    ..|.++...|||.+++++ ..
T Consensus       120 ~~~~~spVn~vvl-------hpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~----~~i~sl~v~~dgsml~a~nnk  188 (311)
T KOG0315|consen  120 NYQHNSPVNTVVL-------HPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD----TSIQSLTVMPDGSMLAAANNK  188 (311)
T ss_pred             hccCCCCcceEEe-------cCCcceEEeecCCCcEEEEEccCCccccccCCCCC----cceeeEEEcCCCcEEEEecCC
Confidence            3445578888877       55677899999999999999998766655543332    389999999999999977 88


Q ss_pred             CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-eEeEEeccccCCeEEEE
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQ  272 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~  272 (304)
                      |..++|++-...  ......+...+..|.+.+..+.+|| +.++|++++.|.+++||+.++. +....+.+|..++..++
T Consensus       189 G~cyvW~l~~~~--~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~  265 (311)
T KOG0315|consen  189 GNCYVWRLLNHQ--TASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCA  265 (311)
T ss_pred             ccEEEEEccCCC--ccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeee
Confidence            999999997632  1222333445688999999999999 8889999999999999999887 67778889999999999


Q ss_pred             ECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       273 ~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      ||.||.||++|+ .|+.+++|+++.++.+.
T Consensus       266 FS~dg~YlvTas-sd~~~rlW~~~~~k~v~  294 (311)
T KOG0315|consen  266 FSADGEYLVTAS-SDHTARLWDLSAGKEVR  294 (311)
T ss_pred             eccCccEEEecC-CCCceeecccccCceee
Confidence            999999999999 99999999999998764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-36  Score=218.65  Aligned_cols=219  Identities=21%  Similarity=0.340  Sum_probs=184.9

Q ss_pred             eeeecCCCCceeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           53 FRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      ..++++|++.|+.++..+. ...+++++.|.++.+|++......            .........+|...|..+..    
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~------------~G~~~r~~~GHsH~v~dv~~----   71 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK------------YGVPVRRLTGHSHFVSDVVL----   71 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc------------cCceeeeeeccceEecceEE----
Confidence            3478999999999999985 568899999999999999754211            12222344557777777755    


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcccee
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~  210 (304)
                         +++|+++++++.|+++++||+.+++..+.+..|..     .|.+++|+||++.|++| .|.+|++|++...      
T Consensus        72 ---s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~-----dVlsva~s~dn~qivSGSrDkTiklwnt~g~------  137 (315)
T KOG0279|consen   72 ---SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK-----DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV------  137 (315)
T ss_pred             ---ccCCceEEeccccceEEEEEecCCcEEEEEEecCC-----ceEEEEecCCCceeecCCCcceeeeeeeccc------
Confidence               88999999999999999999999999999998776     99999999999999977 9999999999752      


Q ss_pred             eeeeeccccccccceeEEEeecCC-CcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCe
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY  289 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~  289 (304)
                       .........+.+.|.++.|+|+. ..+|++++.|++|++||+++.+....+.+|.+.++.+.+||||..+++|+ .||.
T Consensus       138 -ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg-kdg~  215 (315)
T KOG0279|consen  138 -CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG-KDGE  215 (315)
T ss_pred             -EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC-CCce
Confidence             12222223347899999999953 67999999999999999999999999999999999999999999999999 9999


Q ss_pred             EEEEecccceeeee
Q 022019          290 ILCWDLRKAVQVVY  303 (304)
Q Consensus       290 i~vwd~~~~~~~~~  303 (304)
                      +.+||++.++.+.+
T Consensus       216 ~~LwdL~~~k~lys  229 (315)
T KOG0279|consen  216 AMLWDLNEGKNLYS  229 (315)
T ss_pred             EEEEEccCCceeEe
Confidence            99999999988643

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.7e-35  Score=239.51  Aligned_cols=226  Identities=21%  Similarity=0.350  Sum_probs=191.0

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCc--------ccc------ccccccccCCccceEEEeecCC
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS--------YDV------NACSLAKDQDSYEASLVVTEGE  120 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~--------~~~------~~~~~~~~~~~~~~~~~~~~~~  120 (304)
                      ++..-...++|..|++|++.||.|-.|..|++|.+...++.        ...      ..................+|.+
T Consensus       373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G  452 (707)
T KOG0263|consen  373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG  452 (707)
T ss_pred             EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence            33334567999999999999999999999999999854321        000      0011222334455566889999


Q ss_pred             eEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEE
Q 022019          121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVF  199 (304)
Q Consensus       121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~  199 (304)
                      +|+.+.|       +|+.++|+++++|+++++|.+.+......+.+|..     +|+.+.|+|-|.++|++ .|++-++|
T Consensus       453 PVyg~sF-------sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~-----PVwdV~F~P~GyYFatas~D~tArLW  520 (707)
T KOG0263|consen  453 PVYGCSF-------SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA-----PVWDVQFAPRGYYFATASHDQTARLW  520 (707)
T ss_pred             ceeeeee-------cccccceeeccCCcceeeeecccceeEEEecCCCc-----ceeeEEecCCceEEEecCCCceeeee
Confidence            9999988       88999999999999999999999999988887776     99999999999999965 99999999


Q ss_pred             EcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcE
Q 022019          200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY  279 (304)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  279 (304)
                      ....        ......+.+|.+.|.|+.|+| +..++++||.|.+|++||..+|..+..|.||.++|++++|||+|++
T Consensus       521 s~d~--------~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~  591 (707)
T KOG0263|consen  521 STDH--------NKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY  591 (707)
T ss_pred             eccc--------CCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence            9876        233334478999999999999 8889999999999999999999999999999999999999999999


Q ss_pred             EEEeeccCCeEEEEecccceeee
Q 022019          280 LYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       280 l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      |++|+ .||.|.+||+.+++.+.
T Consensus       592 LaSg~-ed~~I~iWDl~~~~~v~  613 (707)
T KOG0263|consen  592 LASGD-EDGLIKIWDLANGSLVK  613 (707)
T ss_pred             Eeecc-cCCcEEEEEcCCCcchh
Confidence            99999 99999999999987653

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-34  Score=215.80  Aligned_cols=213  Identities=22%  Similarity=0.305  Sum_probs=185.3

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      .+.++||.+.|.+|+|+..|++|++++.|-.+++||..+.                ........+|...|.+++|.|   
T Consensus       143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~----------------~~c~ks~~gh~h~vS~V~f~P---  203 (406)
T KOG0295|consen  143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF----------------FRCIKSLIGHEHGVSSVFFLP---  203 (406)
T ss_pred             hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH----------------HHHHHHhcCcccceeeEEEEe---
Confidence            3478899999999999999999999999988999998742                111124456678889998855   


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                          .|.++++++.|.+|+.|++.++.++.++..+..     .|..++.+.||..++++ .|.++++|-+.+        
T Consensus       204 ----~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-----wvr~v~v~~DGti~As~s~dqtl~vW~~~t--------  266 (406)
T KOG0295|consen  204 ----LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-----WVRMVRVNQDGTIIASCSNDQTLRVWVVAT--------  266 (406)
T ss_pred             ----cCCeeeecccccceeEEecccceeEEeccCchH-----hEEEEEecCCeeEEEecCCCceEEEEEecc--------
Confidence                578999999999999999999999999998876     99999999999999965 999999999977        


Q ss_pred             eeeeccccccccceeEEEeecC--------------CCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCC
Q 022019          212 STLKGNKEGQAGIMSAIAFSPT--------------HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG  277 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~--------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  277 (304)
                      .........|+.+|.+++|-|.              ++.++.+++.|++|++||+.++.++.++.+|..+|..++|+|.|
T Consensus       267 ~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~G  346 (406)
T KOG0295|consen  267 KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGG  346 (406)
T ss_pred             chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCC
Confidence            2233344678888999999873              23699999999999999999999999999999999999999999


Q ss_pred             cEEEEeeccCCeEEEEecccceeee
Q 022019          278 NYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       278 ~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      +||+++. +|+++++||+++++++.
T Consensus       347 kyi~Sca-DDktlrvwdl~~~~cmk  370 (406)
T KOG0295|consen  347 KYILSCA-DDKTLRVWDLKNLQCMK  370 (406)
T ss_pred             eEEEEEe-cCCcEEEEEeccceeee
Confidence            9999999 99999999999998864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.1e-33  Score=218.94  Aligned_cols=208  Identities=24%  Similarity=0.394  Sum_probs=176.8

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      +..|++++|+.+|..||+|+.||.+++|+......                  ..+..|..+|.++.|       +..|.
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~------------------~tl~~HkgPI~slKW-------nk~G~  289 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI------------------STLGQHKGPIFSLKW-------NKKGT  289 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCchhh------------------hhhhccCCceEEEEE-------cCCCC
Confidence            46899999999999999999999999999864322                  244557799999999       77899


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccc------------------------------------cccccceEEEEECC
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDA------------------------------------VDEITAAFSVAFNP  183 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------------------------------~~~~~~v~~i~~~~  183 (304)
                      +|++++.|+++.+||..++...+.+..+..                                    .+|...|.++.|+|
T Consensus       290 yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~  369 (524)
T KOG0273|consen  290 YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP  369 (524)
T ss_pred             EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC
Confidence            999999999999999988877666555432                                    13566899999999


Q ss_pred             CCcEEEE-EcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCC--------CcEEEEEecCCeEEEEecCC
Q 022019          184 TGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH--------TGMLAIGSYSQTSAIYREDN  254 (304)
Q Consensus       184 ~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--------~~~l~~~~~dg~i~i~d~~~  254 (304)
                      .|.+|++ +.|++++||....        ......+.+|...|..+.|+|.+        +..+++++.|++|++||+..
T Consensus       370 tg~LLaS~SdD~TlkiWs~~~--------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~  441 (524)
T KOG0273|consen  370 TGSLLASCSDDGTLKIWSMGQ--------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES  441 (524)
T ss_pred             CCceEEEecCCCeeEeeecCC--------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence            9999995 5999999999865        22233347788889999998853        45899999999999999999


Q ss_pred             ceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       255 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +.++.+|..|..+|++++|+|+|+++++|+ .||.|.+|+.++++.+
T Consensus       442 gv~i~~f~kH~~pVysvafS~~g~ylAsGs-~dg~V~iws~~~~~l~  487 (524)
T KOG0273|consen  442 GVPIHTLMKHQEPVYSVAFSPNGRYLASGS-LDGCVHIWSTKTGKLV  487 (524)
T ss_pred             CceeEeeccCCCceEEEEecCCCcEEEecC-CCCeeEeccccchhee
Confidence            999999999999999999999999999999 9999999999998654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.5e-32  Score=197.51  Aligned_cols=214  Identities=22%  Similarity=0.373  Sum_probs=177.6

Q ss_pred             eeeeecCCCCceeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           52 QFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        52 ~~~~~~~h~~~V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      .++.+.+|.+.|..++|+|- |..||||+.|+.|++|+...+..             -.....+...|...|.+++|   
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-------------~~ck~vld~~hkrsVRsvAw---   69 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-------------WTCKTVLDDGHKRSVRSVAW---   69 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-------------EEEEEeccccchheeeeeee---
Confidence            34578899999999999997 88999999999999999874211             00111133457789999998   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCC--eeeEEeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCcc
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRD  207 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~  207 (304)
                          +|.|++|++++.|.++.||.-..+  +++.++++|..     .|.+++|+++|++||+ +.|..|-||.+.. ...
T Consensus        70 ----sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn-----EVK~Vaws~sG~~LATCSRDKSVWiWe~de-ddE  139 (312)
T KOG0645|consen   70 ----SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN-----EVKCVAWSASGNYLATCSRDKSVWIWEIDE-DDE  139 (312)
T ss_pred             ----cCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc-----ceeEEEEcCCCCEEEEeeCCCeEEEEEecC-CCc
Confidence                779999999999999999986654  45566676665     9999999999999995 5999999999984 444


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC---CceEeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---NMELLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      +.....+    ..|...|..+.|+| ...+|+++++|++|++|+-.   ...++.++.+|...|.+++|+|.|..|++++
T Consensus       140 fec~aVL----~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s  214 (312)
T KOG0645|consen  140 FECIAVL----QEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS  214 (312)
T ss_pred             EEEEeee----ccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence            5444444    67888899999999 77899999999999999765   4578999999999999999999999999999


Q ss_pred             ccCCeEEEEeccc
Q 022019          285 RKDPYILCWDLRK  297 (304)
Q Consensus       285 ~~d~~i~vwd~~~  297 (304)
                       .|++++||...+
T Consensus       215 -dD~tv~Iw~~~~  226 (312)
T KOG0645|consen  215 -DDGTVSIWRLYT  226 (312)
T ss_pred             -CCcceEeeeecc
Confidence             999999998543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.2e-34  Score=213.14  Aligned_cols=220  Identities=17%  Similarity=0.271  Sum_probs=186.3

Q ss_pred             CCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCe
Q 022019           42 PPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGES  121 (304)
Q Consensus        42 ~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (304)
                      +.+....+++.++.+.+|.+.|.|+++.|...+|+||+.|++++|||+.++.+...                 ..+|...
T Consensus       133 ~rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt-----------------ltGhi~~  195 (460)
T KOG0285|consen  133 PRPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT-----------------LTGHIET  195 (460)
T ss_pred             CCccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe-----------------ecchhhe
Confidence            34444567788889999999999999999999999999999999999998765432                 3335567


Q ss_pred             EEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEE
Q 022019          122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFD  200 (304)
Q Consensus       122 v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d  200 (304)
                      |..+++       |+-..++++++.|+.|+.||++..+.++.+.+|-.     .|++++.+|.-..|++| .|.+++|||
T Consensus       196 vr~vav-------S~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS-----~V~~L~lhPTldvl~t~grDst~RvWD  263 (460)
T KOG0285|consen  196 VRGVAV-------SKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS-----GVYCLDLHPTLDVLVTGGRDSTIRVWD  263 (460)
T ss_pred             eeeeee-------cccCceEEEecCCCeeEEEechhhhhHHHhccccc-----eeEEEeccccceeEEecCCcceEEEee
Confidence            777776       55566999999999999999999988877766554     99999999999999965 999999999


Q ss_pred             cCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEE
Q 022019          201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYL  280 (304)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  280 (304)
                      +|+.        .....+.+|..+|..+.+.|. ...+++|+.|++|++||++.++...++..|+..|.+++.+|....+
T Consensus       264 iRtr--------~~V~~l~GH~~~V~~V~~~~~-dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~f  334 (460)
T KOG0285|consen  264 IRTR--------ASVHVLSGHTNPVASVMCQPT-DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLF  334 (460)
T ss_pred             eccc--------ceEEEecCCCCcceeEEeecC-CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhh
Confidence            9983        233334889999999999994 4478999999999999999999999999999999999999999999


Q ss_pred             EEeeccCCeEEEEecccceee
Q 022019          281 YTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       281 ~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      ++++ .| .|+-|++..|..+
T Consensus       335 ASas-~d-nik~w~~p~g~f~  353 (460)
T KOG0285|consen  335 ASAS-PD-NIKQWKLPEGEFL  353 (460)
T ss_pred             hccC-Cc-cceeccCCccchh
Confidence            9988 55 5999999877543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.8e-32  Score=200.31  Aligned_cols=206  Identities=23%  Similarity=0.333  Sum_probs=178.0

Q ss_pred             eeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        52 ~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      ..+.+.+|.+.+.|+.|-+|+ .|+|++.|.+..+||+++++..                 ....+|...|.++...|. 
T Consensus       137 v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~-----------------~~f~GH~gDV~slsl~p~-  197 (343)
T KOG0286|consen  137 VSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQT-----------------QVFHGHTGDVMSLSLSPS-  197 (343)
T ss_pred             eeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEE-----------------EEecCCcccEEEEecCCC-
Confidence            345789999999999998755 7889999999999999876542                 244567788999877442 


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcccee
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~  210 (304)
                           +++.|++|+-|+..++||++.+...+++..|..     .|+++.|.|+|.-+++| .|++.++||+|... +...
T Consensus       198 -----~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-----DINsv~ffP~G~afatGSDD~tcRlyDlRaD~-~~a~  266 (343)
T KOG0286|consen  198 -----DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-----DINSVRFFPSGDAFATGSDDATCRLYDLRADQ-ELAV  266 (343)
T ss_pred             -----CCCeEEecccccceeeeeccCcceeEeeccccc-----ccceEEEccCCCeeeecCCCceeEEEeecCCc-EEee
Confidence                 889999999999999999999999999998776     99999999999999977 99999999999742 2221


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeE
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI  290 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i  290 (304)
                      +.     ......+|++++|+. .+++|++|..|..+.+||.-.++.+..+.+|++.|+++..+|||.-|++|+ .|.++
T Consensus       267 ys-----~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgS-WDs~l  339 (343)
T KOG0286|consen  267 YS-----HDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGS-WDSTL  339 (343)
T ss_pred             ec-----cCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecc-hhHhe
Confidence            11     234456799999999 888999999999999999999999999999999999999999999999999 99999


Q ss_pred             EEEe
Q 022019          291 LCWD  294 (304)
Q Consensus       291 ~vwd  294 (304)
                      +||.
T Consensus       340 riW~  343 (343)
T KOG0286|consen  340 RIWA  343 (343)
T ss_pred             eecC
Confidence            9994

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=4.7e-33  Score=205.28  Aligned_cols=232  Identities=16%  Similarity=0.343  Sum_probs=183.1

Q ss_pred             eeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccc-cccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC-SLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ..+..|++++.+.+|+|||.++|||+.|-.|+|.|+...-........ .........+...+..|..+|.++.|+|   
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP---  182 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP---  182 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc---
Confidence            467889999999999999999999999999999998632111110000 0111223356667788899999998854   


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                          ....|++|+.|++|++||+........++...   ...+|.++.|+|.|.++++| ....+++||+.+-    +++
T Consensus       183 ----re~ILiS~srD~tvKlFDfsK~saKrA~K~~q---d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~----Qcf  251 (430)
T KOG0640|consen  183 ----RETILISGSRDNTVKLFDFSKTSAKRAFKVFQ---DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY----QCF  251 (430)
T ss_pred             ----hhheEEeccCCCeEEEEecccHHHHHHHHHhh---ccceeeeEeecCCCceEEEecCCCceeEEeccce----eEe
Confidence                67799999999999999998654443333322   22389999999999999988 6678999999873    111


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-cccC-CeEEEEECCCCcEEEEeeccCCe
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEG-GVTHVQFSRDGNYLYTGGRKDPY  289 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~-~v~~~~~~~~~~~l~~~~~~d~~  289 (304)
                       ........|.+.|+++.+++ .+.++++|+.||.|+|||--+++++.++. .|.+ .|.+..|..+|+||++.| .|..
T Consensus       252 -vsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG-~DS~  328 (430)
T KOG0640|consen  252 -VSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG-KDST  328 (430)
T ss_pred             -eecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC-Ccce
Confidence             11224477899999999999 88899999999999999999999998886 5654 699999999999999999 9999


Q ss_pred             EEEEecccceeee
Q 022019          290 ILCWDLRKAVQVV  302 (304)
Q Consensus       290 i~vwd~~~~~~~~  302 (304)
                      +++|++.+++.+.
T Consensus       329 vkLWEi~t~R~l~  341 (430)
T KOG0640|consen  329 VKLWEISTGRMLK  341 (430)
T ss_pred             eeeeeecCCceEE
Confidence            9999999998875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.8e-32  Score=211.20  Aligned_cols=219  Identities=20%  Similarity=0.337  Sum_probs=178.2

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccccccc------------------------ccCCcc
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLA------------------------KDQDSY  110 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~------------------------~~~~~~  110 (304)
                      ++..|+++|.+++|+.+|.||++++.||++.+||..++.....+..+...                        .-....
T Consensus       271 tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~  350 (524)
T KOG0273|consen  271 TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR  350 (524)
T ss_pred             hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCC
Confidence            67789999999999999999999999999999999776543222221111                        011222


Q ss_pred             ceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCC-----
Q 022019          111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-----  185 (304)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-----  185 (304)
                      ......+|..+|.++.|       +|.+.+|++++.|++++||+.........+..|..     .|+.+.|+|+|     
T Consensus       351 P~~t~~GH~g~V~alk~-------n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk-----ei~t~~wsp~g~v~~n  418 (524)
T KOG0273|consen  351 PVKTFIGHHGEVNALKW-------NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK-----EIYTIKWSPTGPVTSN  418 (524)
T ss_pred             cceeeecccCceEEEEE-------CCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc-----ceeeEeecCCCCccCC
Confidence            23344557888999988       66899999999999999999888777777776665     89999999976     


Q ss_pred             ----cEEE-EEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEE
Q 022019          186 ----TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV  260 (304)
Q Consensus       186 ----~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~  260 (304)
                          ..++ ++.|++|++||+..+        .....+..|..+|++++|+| ++.++|+|+.||.|++|+++.++..+.
T Consensus       419 ~~~~~~l~sas~dstV~lwdv~~g--------v~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s  489 (524)
T KOG0273|consen  419 PNMNLMLASASFDSTVKLWDVESG--------VPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKS  489 (524)
T ss_pred             CcCCceEEEeecCCeEEEEEccCC--------ceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEe
Confidence                3455 569999999999873        22233467999999999999 888999999999999999999999999


Q ss_pred             eccccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          261 LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       261 ~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      +.+ .+.|..++|+.+|.+|..+. .|+.+++.|++
T Consensus       490 ~~~-~~~Ifel~Wn~~G~kl~~~~-sd~~vcvldlr  523 (524)
T KOG0273|consen  490 YQG-TGGIFELCWNAAGDKLGACA-SDGSVCVLDLR  523 (524)
T ss_pred             ecC-CCeEEEEEEcCCCCEEEEEe-cCCCceEEEec
Confidence            985 56799999999999999888 99999999986

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.3e-33  Score=214.94  Aligned_cols=203  Identities=20%  Similarity=0.421  Sum_probs=170.0

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      +-+|..+.|.|+|+.|++|+..|.+.+|+...-..                 ..+...|..+|.++.|       ++++.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-----------------EtilQaHDs~Vr~m~w-------s~~g~  151 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-----------------ETILQAHDSPVRTMKW-------SHNGT  151 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeH-----------------HHHhhhhcccceeEEE-------ccCCC
Confidence            45799999999999999999999999998742111                 1144567799999999       77999


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCccceeeeeeeccc
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                      ++++|+.+|.|++|+....... .+..+.    ...|.+++|+|....++ ++.||+|+|||......        ...+
T Consensus       152 wmiSgD~gG~iKyWqpnmnnVk-~~~ahh----~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke--------e~vL  218 (464)
T KOG0284|consen  152 WMISGDKGGMIKYWQPNMNNVK-IIQAHH----AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE--------ERVL  218 (464)
T ss_pred             EEEEcCCCceEEecccchhhhH-HhhHhh----hhhhheeccCCCCceeEEecCCCeEEEEeccCCch--------hhee
Confidence            9999999999999998654433 333222    12899999999877777 56999999999987422        1222


Q ss_pred             cccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       219 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      .+|.-.|.+++|+| ...++++|+.|..|++||.+++.++.++.+|+..|..+.|+|++++|+++| .|..++++|+++.
T Consensus       219 ~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s-kD~~~kv~DiR~m  296 (464)
T KOG0284|consen  219 RGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS-KDQSCKVFDIRTM  296 (464)
T ss_pred             ccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc-CCceEEEEehhHh
Confidence            78888999999999 677999999999999999999999999999999999999999999999999 9999999999965


Q ss_pred             eee
Q 022019          299 VQV  301 (304)
Q Consensus       299 ~~~  301 (304)
                      +.+
T Consensus       297 kEl  299 (464)
T KOG0284|consen  297 KEL  299 (464)
T ss_pred             HHH
Confidence            544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.4e-31  Score=222.83  Aligned_cols=215  Identities=23%  Similarity=0.411  Sum_probs=178.9

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      .+.+.+|...|.+++|+|+++++++++.|++++|||+...                .........|...|++++|     
T Consensus       196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~----------------~~~~~~l~gH~~~v~~~~f-----  254 (456)
T KOG0266|consen  196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD----------------GRNLKTLKGHSTYVTSVAF-----  254 (456)
T ss_pred             hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC----------------CeEEEEecCCCCceEEEEe-----
Confidence            4466899999999999999999999999999999999422                1222355578899999988     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                        +|+++++++|+.|++|++||++++++...+..|..     .|.+++|++++.+|+++ .|+.|++||+.+....  ..
T Consensus       255 --~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-----~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~--~~  325 (456)
T KOG0266|consen  255 --SPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-----GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL--CL  325 (456)
T ss_pred             --cCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-----ceEEEEECCCCCEEEEcCCCccEEEEECCCCcee--ee
Confidence              77889999999999999999999999999998886     99999999999999976 8999999999875321  11


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCC---eEEEEECCCCcEEEEeeccCC
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG---VTHVQFSRDGNYLYTGGRKDP  288 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~~d~  288 (304)
                      ..+.. ..... +++++.|+| ++.++++++.|+.+++||++.+..+..+.+|...   +.+...++.+.++++|+ .|+
T Consensus       326 ~~~~~-~~~~~-~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~-~d~  401 (456)
T KOG0266|consen  326 KLLSG-AENSA-PVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS-EDG  401 (456)
T ss_pred             ecccC-CCCCC-ceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEe-CCc
Confidence            11111 12222 699999999 8889999999999999999999999999988874   44555688999999999 999


Q ss_pred             eEEEEecccceee
Q 022019          289 YILCWDLRKAVQV  301 (304)
Q Consensus       289 ~i~vwd~~~~~~~  301 (304)
                      .|.+||+.++..+
T Consensus       402 ~v~~~~~~s~~~~  414 (456)
T KOG0266|consen  402 SVYVWDSSSGGIL  414 (456)
T ss_pred             eEEEEeCCccchh
Confidence            9999999986543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.9e-31  Score=221.90  Aligned_cols=213  Identities=28%  Similarity=0.424  Sum_probs=178.7

Q ss_pred             eeeecCC-CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           53 FRTSSIP-NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        53 ~~~~~~h-~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      ...+.+| ...|.++.|+++|++|++++.|+.+++|+......               ........|...|.+++|    
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------~~~~~l~~h~~~v~~~~f----  211 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------NLLRELSGHTRGVSDVAF----  211 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------hhhccccccccceeeeEE----
Confidence            3345444 88999999999999999999999999999854431               001122456688999988    


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEc-CCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDA-TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                         +|+++++++++.|++|++||+ ..+....++..|..     .|++++|+|+++++++| .|++|+|||+++      
T Consensus       212 ---s~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~-----~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~------  277 (456)
T KOG0266|consen  212 ---SPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST-----YVTSVAFSPDGNLLVSGSDDGTVRIWDVRT------  277 (456)
T ss_pred             ---CCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCC-----ceEEEEecCCCCEEEEecCCCcEEEEeccC------
Confidence               789999999999999999999 45578888887776     99999999999888866 999999999987      


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce--EeEEeccccCC--eEEEEECCCCcEEEEeec
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGG--VTHVQFSRDGNYLYTGGR  285 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~  285 (304)
                        ........+|...|++++|++ ++.+|++++.|+.|+|||+.++.  +...+.++...  ++++.|+|++.+|++++ 
T Consensus       278 --~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-  353 (456)
T KOG0266|consen  278 --GECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS-  353 (456)
T ss_pred             --CeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec-
Confidence              233334478999999999999 78899999999999999999998  66777776665  99999999999999999 


Q ss_pred             cCCeEEEEecccceeee
Q 022019          286 KDPYILCWDLRKAVQVV  302 (304)
Q Consensus       286 ~d~~i~vwd~~~~~~~~  302 (304)
                      .|+.+++||++.++.+.
T Consensus       354 ~d~~~~~w~l~~~~~~~  370 (456)
T KOG0266|consen  354 LDRTLKLWDLRSGKSVG  370 (456)
T ss_pred             CCCeEEEEEccCCccee
Confidence            99999999999886653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.5e-32  Score=198.07  Aligned_cols=204  Identities=18%  Similarity=0.309  Sum_probs=173.8

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+.+|.+.|..+.|+|+|.+||||+.|..|.+|++......                ......|...|..+.|       
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN----------------~~~lkgHsgAVM~l~~-------   98 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN----------------FWVLKGHSGAVMELHG-------   98 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc----------------eeeeccccceeEeeee-------
Confidence            67899999999999999999999999999999997643221                1134478899999988       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~  212 (304)
                      .++++.+++++.|.+++.||+++|+....++.|..     .|+++.-+.-|..++ ++ .|+++++||+|.... .   .
T Consensus        99 ~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~-----~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~---~  169 (338)
T KOG0265|consen   99 MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS-----FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-I---K  169 (338)
T ss_pred             ccCCCEEEEecCCceEEEEecccceeeehhccccc-----eeeecCccccCCeEEEecCCCceEEEEeecccch-h---h
Confidence            77999999999999999999999999998888775     788888555677777 55 899999999996321 1   1


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                      .     ......++++.|.. .+..+.+|+-|+.|++||++.+.....++||..+|+.+..+|+|.++.+-+ .|.++++
T Consensus       170 t-----~~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns-Md~tvrv  242 (338)
T KOG0265|consen  170 T-----FENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS-MDNTVRV  242 (338)
T ss_pred             c-----cccceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc-ccceEEE
Confidence            1     11234589999998 677889999999999999999999999999999999999999999999999 9999999


Q ss_pred             Eeccc
Q 022019          293 WDLRK  297 (304)
Q Consensus       293 wd~~~  297 (304)
                      ||++.
T Consensus       243 wd~rp  247 (338)
T KOG0265|consen  243 WDVRP  247 (338)
T ss_pred             EEecc
Confidence            99975

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.9e-31  Score=189.31  Aligned_cols=228  Identities=17%  Similarity=0.279  Sum_probs=180.5

Q ss_pred             cHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccc
Q 022019           22 TEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC  101 (304)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~  101 (304)
                      ..+++-|...+.|     +..++...      +++....+.|+.+...|+++.||+++.- .||+||+.++..       
T Consensus        13 LvsA~YDhTIRfW-----qa~tG~C~------rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np-------   73 (311)
T KOG0315|consen   13 LVSAGYDHTIRFW-----QALTGICS------RTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNP-------   73 (311)
T ss_pred             EEeccCcceeeee-----ehhcCeEE------EEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCC-------
Confidence            3445555555555     44455444      3666677889999999999999998875 699999986532       


Q ss_pred             cccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEE
Q 022019          102 SLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF  181 (304)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~  181 (304)
                              ........|...|..+.|       ..+|+++++|++||+++|||++...+.+.+...      .+|+++..
T Consensus        74 --------~Pv~t~e~h~kNVtaVgF-------~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~------spVn~vvl  132 (311)
T KOG0315|consen   74 --------NPVATFEGHTKNVTAVGF-------QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN------SPVNTVVL  132 (311)
T ss_pred             --------CceeEEeccCCceEEEEE-------eecCeEEEecCCCceEEEEeccCcccchhccCC------CCcceEEe
Confidence                    123345567788888877       779999999999999999999986666555544      39999999


Q ss_pred             CCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-----
Q 022019          182 NPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-----  255 (304)
Q Consensus       182 ~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-----  255 (304)
                      +|+...|++| .+|.|++||+....-.    ..+   .......|.++...| ++.+++.+...|..++|++-+.     
T Consensus       133 hpnQteLis~dqsg~irvWDl~~~~c~----~~l---iPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~  204 (311)
T KOG0315|consen  133 HPNQTELISGDQSGNIRVWDLGENSCT----HEL---IPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASE  204 (311)
T ss_pred             cCCcceEEeecCCCcEEEEEccCCccc----ccc---CCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCcccc
Confidence            9998888877 9999999999864111    111   133346699999999 7889999999999999998643     


Q ss_pred             -eEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          256 -ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       256 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                       +++..++.|.+.+..+.+|||+++|++++ .|.+++||+.++.
T Consensus       205 l~P~~k~~ah~~~il~C~lSPd~k~lat~s-sdktv~iwn~~~~  247 (311)
T KOG0315|consen  205 LEPVHKFQAHNGHILRCLLSPDVKYLATCS-SDKTVKIWNTDDF  247 (311)
T ss_pred             ceEhhheecccceEEEEEECCCCcEEEeec-CCceEEEEecCCc
Confidence             57788899999999999999999999999 9999999999876

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.5e-31  Score=216.90  Aligned_cols=222  Identities=23%  Similarity=0.317  Sum_probs=183.7

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..|+.....-..      ...+|...+++++++|||+++|||+.||.|+|||...+-                 ....
T Consensus       331 QLlVweWqsEsYVl------KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-----------------C~vT  387 (893)
T KOG0291|consen  331 QLLVWEWQSESYVL------KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-----------------CFVT  387 (893)
T ss_pred             eEEEEEeeccceee------eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-----------------EEEE
Confidence            34455554443322      557999999999999999999999999999999987543                 2335


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  193 (304)
                      ...|...|+.++|       +..|+.+++.+-||+|+.||+...+.-+++..+...    ...+++.+|.|..+++| .|
T Consensus       388 FteHts~Vt~v~f-------~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~----QfscvavD~sGelV~AG~~d  456 (893)
T KOG0291|consen  388 FTEHTSGVTAVQF-------TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI----QFSCVAVDPSGELVCAGAQD  456 (893)
T ss_pred             eccCCCceEEEEE-------EecCCEEEEeecCCeEEeeeecccceeeeecCCCce----eeeEEEEcCCCCEEEeeccc
Confidence            5667789999988       668999999999999999999999888888776532    66799999999999977 44


Q ss_pred             -CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-eEeEEeccccCCeEEE
Q 022019          194 -KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHV  271 (304)
Q Consensus       194 -~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~  271 (304)
                       =.|.+|++.+        ..+.....+|.+||.+++|+| .+..|++||.|.+|++||+-.. ..+.++. +...+..+
T Consensus       457 ~F~IfvWS~qT--------GqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~v  526 (893)
T KOG0291|consen  457 SFEIFVWSVQT--------GQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAV  526 (893)
T ss_pred             eEEEEEEEeec--------CeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEE
Confidence             4699999988        445555689999999999999 7779999999999999998654 3455555 67789999


Q ss_pred             EECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       272 ~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +|+|+|+.|+++. -||.|.+||...+.++
T Consensus       527 sfrPdG~elaVaT-ldgqItf~d~~~~~q~  555 (893)
T KOG0291|consen  527 SFRPDGKELAVAT-LDGQITFFDIKEAVQV  555 (893)
T ss_pred             EEcCCCCeEEEEE-ecceEEEEEhhhceee
Confidence            9999999999999 9999999999887665

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=100.00  E-value=1.6e-31  Score=198.12  Aligned_cols=276  Identities=46%  Similarity=0.808  Sum_probs=219.5

Q ss_pred             cHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccc
Q 022019           22 TEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC  101 (304)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~  101 (304)
                      .+...++.....|+ +.+...+.........+...+ ..+...+..|+|||..|++-+.|..+++|++............
T Consensus        13 gek~~ede~~~s~n-~~y~qg~~~l~g~~~~~stt~-p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~   90 (406)
T KOG2919|consen   13 GEKDDEDEKKKSWN-FGYVQGPINLGGNVIAFSTTK-PLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGP   90 (406)
T ss_pred             CccCcccchhccCc-cceeecceeccCceEEeccCC-chhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCc
Confidence            33445566667776 555544443333222222222 4556778999999999999999999999998754332221111


Q ss_pred             cccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEE
Q 022019          102 SLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF  181 (304)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~  181 (304)
                          ........+....+..|++.+|.+..-...|+.+++++.+.+..|++||.-+|+....+.............++.|
T Consensus        91 ----~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~F  166 (406)
T KOG2919|consen   91 ----LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQF  166 (406)
T ss_pred             ----cccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEe
Confidence                1122334466677889999999999888899999999999999999999999999999888777666667789999


Q ss_pred             CCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEe
Q 022019          182 NPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL  261 (304)
Q Consensus       182 ~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  261 (304)
                      +|||..|++|..++|++||+..+++......++.....+..+.+.+++|+|.+...+++|+....+-||.-....++..+
T Consensus       167 s~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll  246 (406)
T KOG2919|consen  167 SPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL  246 (406)
T ss_pred             cCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee
Confidence            99999999999999999999776665555555544456677889999999988889999999999999999899999999


Q ss_pred             ccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceeeee
Q 022019          262 HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVY  303 (304)
Q Consensus       262 ~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~~  303 (304)
                      -+|.+.|+.+.|.++|+.|++|++.|..|..||++..+.+++
T Consensus       247 ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~  288 (406)
T KOG2919|consen  247 GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY  288 (406)
T ss_pred             cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence            999999999999999999999999999999999998877665

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.4e-30  Score=216.13  Aligned_cols=218  Identities=18%  Similarity=0.286  Sum_probs=162.7

Q ss_pred             eecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      .+.+|.+.|++++|+| ++.+|++|+.||+|++||+.++......          .........|...|.+++|+|.   
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~----------~~~l~~L~gH~~~V~~l~f~P~---  136 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI----------SDPIVHLQGHTKKVGIVSFHPS---  136 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc----------CcceEEecCCCCcEEEEEeCcC---
Confidence            5789999999999999 8899999999999999999764321110          0112234567788999998542   


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeee
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~  212 (304)
                         .+++|++++.|++|+|||+.+++....+..+..     .|.+++|+|++.+|+++ .|+.|++||++++. .   ..
T Consensus       137 ---~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~-----~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-~---v~  204 (493)
T PTZ00421        137 ---AMNVLASAGADMVVNVWDVERGKAVEVIKCHSD-----QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-I---VS  204 (493)
T ss_pred             ---CCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC-----ceEEEEEECCCCEEEEecCCCEEEEEECCCCc-E---EE
Confidence               246899999999999999999988777765554     89999999999999965 99999999998742 1   11


Q ss_pred             eeeccccccccc-eeEEEeecCCCcEEEEE---ecCCeEEEEecCCce-EeEEeccc-cCCeEEEEECCCCcEEEEeecc
Q 022019          213 TLKGNKEGQAGI-MSAIAFSPTHTGMLAIG---SYSQTSAIYREDNME-LLYVLHGQ-EGGVTHVQFSRDGNYLYTGGRK  286 (304)
Q Consensus       213 ~~~~~~~~~~~~-v~~~~~~p~~~~~l~~~---~~dg~i~i~d~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~  286 (304)
                      .+    .+|.+. ...+.|.|+++.++.+|   +.|+.|++||+++.. ++.....+ ...+....|++++.+|++++..
T Consensus       205 tl----~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkg  280 (493)
T PTZ00421        205 SV----EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKG  280 (493)
T ss_pred             EE----ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeC
Confidence            22    344433 45678888444444444   247899999998754 44444333 3456677899999999988734


Q ss_pred             CCeEEEEecccceee
Q 022019          287 DPYILCWDLRKAVQV  301 (304)
Q Consensus       287 d~~i~vwd~~~~~~~  301 (304)
                      |+.|++||+.+++.+
T Consensus       281 Dg~Iriwdl~~~~~~  295 (493)
T PTZ00421        281 EGNIRCFELMNERLT  295 (493)
T ss_pred             CCeEEEEEeeCCceE
Confidence            999999999988654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.8e-33  Score=211.83  Aligned_cols=206  Identities=19%  Similarity=0.358  Sum_probs=174.6

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+..|..+|+++.|+++|.++++|+.+|.|++|+..-+.                 +..+...|...|++++|       
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-----------------Vk~~~ahh~eaIRdlaf-------  188 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-----------------VKIIQAHHAEAIRDLAF-------  188 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-----------------hHHhhHhhhhhhheecc-------
Confidence            457899999999999999999999999999999976321                 11233345578888877       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      +|+...|+++++||+|+|||....+....+..|.-     .|.+++|+|...+|+++ .|..|++||.+++        .
T Consensus       189 SpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgw-----dVksvdWHP~kgLiasgskDnlVKlWDprSg--------~  255 (464)
T KOG0284|consen  189 SPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGW-----DVKSVDWHPTKGLIASGSKDNLVKLWDPRSG--------S  255 (464)
T ss_pred             CCCCceeEEecCCCeEEEEeccCCchhheeccCCC-----CcceeccCCccceeEEccCCceeEeecCCCc--------c
Confidence            67778899999999999999998888888877765     89999999999999965 9999999999984        2


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCc-EEEEeeccCCeEEE
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYILC  292 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~d~~i~v  292 (304)
                      ......+|...|..+.|+| ++.+|+++|.|..+++||+++.+.++.+++|+..|+++.|+|-.. +|.+|| .||.|..
T Consensus       256 cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg-~Dgsvvh  333 (464)
T KOG0284|consen  256 CLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG-SDGSVVH  333 (464)
T ss_pred             hhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeecc-CCCceEE
Confidence            2233367888999999999 668999999999999999999999999999999999999999654 556666 9999999


Q ss_pred             Eecccce
Q 022019          293 WDLRKAV  299 (304)
Q Consensus       293 wd~~~~~  299 (304)
                      |.+...+
T Consensus       334 ~~v~~~~  340 (464)
T KOG0284|consen  334 WVVGLEE  340 (464)
T ss_pred             Eeccccc
Confidence            9987433

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.3e-32  Score=212.26  Aligned_cols=217  Identities=20%  Similarity=0.333  Sum_probs=178.6

Q ss_pred             ccccccceeeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEE
Q 022019           45 RTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY  123 (304)
Q Consensus        45 ~~~~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  123 (304)
                      +.+.+.+....+.||+..|+++.|.| .+.+|++++.|+.|+||++..                +........+|..+|.
T Consensus       199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~----------------~~~~lrtf~gH~k~Vr  262 (503)
T KOG0282|consen  199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD----------------DRRCLRTFKGHRKPVR  262 (503)
T ss_pred             eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec----------------Ccceehhhhcchhhhh
Confidence            44555677789999999999999999 899999999999999999874                2223335677889999


Q ss_pred             EEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCC-cEEEEE-cCCeEEEEEc
Q 022019          124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG-YNKSVRVFDV  201 (304)
Q Consensus       124 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~v~d~  201 (304)
                      +++|       +.+|..|++++.|+.|++||+++|++...+....      .++++.|+|++ +.+++| .|+.|+.||+
T Consensus       263 d~~~-------s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~------~~~cvkf~pd~~n~fl~G~sd~ki~~wDi  329 (503)
T KOG0282|consen  263 DASF-------NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK------VPTCVKFHPDNQNIFLVGGSDKKIRQWDI  329 (503)
T ss_pred             hhhc-------cccCCeeeeeecceeeeeeccccceEEEEEecCC------CceeeecCCCCCcEEEEecCCCcEEEEec
Confidence            9988       7799999999999999999999999998887655      78899999998 555566 9999999999


Q ss_pred             CCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeE----------------------
Q 022019          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY----------------------  259 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------------  259 (304)
                      |.+        .+......|-+.|..+.|-| ++..+++.++|+.++||+.+...++.                      
T Consensus       330 Rs~--------kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~  400 (503)
T KOG0282|consen  330 RSG--------KVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWF  400 (503)
T ss_pred             cch--------HHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCee
Confidence            983        34444467888899999999 88899999999999999876442111                      


Q ss_pred             ------------------------Eecccc--CCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          260 ------------------------VLHGQE--GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       260 ------------------------~~~~~~--~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                                              .+.+|.  +.-..+.|||||.+|++|. .||.+.+||.++.+.
T Consensus       401 ~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd-sdG~v~~wdwkt~kl  466 (503)
T KOG0282|consen  401 AAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD-SDGKVNFWDWKTTKL  466 (503)
T ss_pred             hhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec-CCccEEEeechhhhh
Confidence                                    123443  3456789999999999999 999999999988654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.2e-31  Score=186.87  Aligned_cols=209  Identities=23%  Similarity=0.360  Sum_probs=176.6

Q ss_pred             eeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        52 ~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      .++.+..|.++|..+.|+-||+|.++|+.|++|++|+...+.+.                 ....+|+..|.+.+.    
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li-----------------ktYsghG~EVlD~~~----   67 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI-----------------KTYSGHGHEVLDAAL----   67 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccccee-----------------eeecCCCceeeeccc----
Confidence            45578899999999999999999999999999999998755432                 245567788888755    


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcccee
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~  210 (304)
                         +.|+..|++|+.|+.+.+||+.+|+....+..|..     .|+.+.|+.+...+++| .|..+++||.+...  ++.
T Consensus        68 ---s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a-----qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s--~eP  137 (307)
T KOG0316|consen   68 ---SSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA-----QVNTVRFNEESSVVASGSFDSSVRLWDCRSRS--FEP  137 (307)
T ss_pred             ---cccccccccCCCCceEEEEEcccCeeeeecccccc-----eeeEEEecCcceEEEeccccceeEEEEcccCC--CCc
Confidence               66888999999999999999999999999998887     99999999999999966 99999999998743  223


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeE
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI  290 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i  290 (304)
                      ++.+    ......|.++..+.   ..|++|+.||+++.||++.++.....-+  .+|++++|++||+.+++++ .|++|
T Consensus       138 iQil----dea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~-l~stl  207 (307)
T KOG0316|consen  138 IQIL----DEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASS-LDSTL  207 (307)
T ss_pred             cchh----hhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEee-cccee
Confidence            3333    33445688888754   4799999999999999999988766654  4799999999999999999 99999


Q ss_pred             EEEecccceee
Q 022019          291 LCWDLRKAVQV  301 (304)
Q Consensus       291 ~vwd~~~~~~~  301 (304)
                      ++.|-.+|+.+
T Consensus       208 rLlDk~tGklL  218 (307)
T KOG0316|consen  208 RLLDKETGKLL  218 (307)
T ss_pred             eecccchhHHH
Confidence            99999999765

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=6.4e-31  Score=198.55  Aligned_cols=221  Identities=20%  Similarity=0.352  Sum_probs=180.9

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccc---------cccccCCccceEEEeecCCeEEEE
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC---------SLAKDQDSYEASLVVTEGESVYDF  125 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~  125 (304)
                      ...||...|-+++..++|..+++|+.|.+|+||+...... .+....         ...............+|..+|.++
T Consensus       188 ~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V  266 (423)
T KOG0313|consen  188 VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE-DELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV  266 (423)
T ss_pred             HhcccccceeEEEecCCCCeEEeecccceeeecccCCCcc-ccccccchhhhhhhhhhhcccccCceEEecccccceeeE
Confidence            4459999999999999999999999999999999332211 111100         001122333445677899999999


Q ss_pred             eecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCC
Q 022019          126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP  204 (304)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~  204 (304)
                      .|.+        ...+.+++.|.+|+.||+.++.....+....      .+.+++++|...+|++| .|..|++||.|.+
T Consensus       267 ~w~d--------~~v~yS~SwDHTIk~WDletg~~~~~~~~~k------sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  267 VWSD--------ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK------SLNCISYSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             EEcC--------CCceEeecccceEEEEEeecccceeeeecCc------ceeEeecccccceeeecCCCCceeecCCCCC
Confidence            9943        4579999999999999999999888877665      78999999999999976 9999999999986


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce-EeEEeccccCCeEEEEECCCCcEEEEe
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGGVTHVQFSRDGNYLYTG  283 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~  283 (304)
                      +..     .....+.+|...|.++.|+|.+...|++|+.|+++++||.++.+ ++..+.+|...|.++.|+ ++..|++|
T Consensus       333 ~gs-----~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSG  406 (423)
T KOG0313|consen  333 DGS-----VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSG  406 (423)
T ss_pred             CCc-----eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEec
Confidence            543     33344578999999999999889999999999999999999887 999999999999999998 56789999


Q ss_pred             eccCCeEEEEeccc
Q 022019          284 GRKDPYILCWDLRK  297 (304)
Q Consensus       284 ~~~d~~i~vwd~~~  297 (304)
                      | .|++|+++.-..
T Consensus       407 G-aD~~l~i~~~~~  419 (423)
T KOG0313|consen  407 G-ADNKLRIFKGSP  419 (423)
T ss_pred             c-CcceEEEecccc
Confidence            9 999999997653

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=4.1e-31  Score=201.81  Aligned_cols=241  Identities=17%  Similarity=0.270  Sum_probs=172.5

Q ss_pred             chhhcHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccc
Q 022019           18 DTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD   97 (304)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~   97 (304)
                      ...+.++++.+...-.|.     +.....   ++..+++.+|..+|.-+.||||.++|++|+.|..+++||+.++.....
T Consensus       235 nGkyLAsaSkD~Taiiw~-----v~~d~~---~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~  306 (519)
T KOG0293|consen  235 NGKYLASASKDSTAIIWI-----VVYDVH---FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL  306 (519)
T ss_pred             CCeeEeeccCCceEEEEE-----EecCcc---eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh
Confidence            344555566666655553     232222   355668999999999999999999999999999999999998865432


Q ss_pred             cccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCe------------------
Q 022019           98 VNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL------------------  159 (304)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------  159 (304)
                      ...                .++..+.+++|       .|||..+++|+.|+.|..||+....                  
T Consensus       307 y~~----------------~~~~S~~sc~W-------~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait  363 (519)
T KOG0293|consen  307 YPS----------------GLGFSVSSCAW-------CPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAIT  363 (519)
T ss_pred             ccc----------------CcCCCcceeEE-------ccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEc
Confidence            211                12356667777       5577778888888888777775310                  


Q ss_pred             ----eeEEeeccc--------------ccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccc
Q 022019          160 ----LRCTYRAYD--------------AVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEG  220 (304)
Q Consensus       160 ----~~~~~~~~~--------------~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  220 (304)
                          .+.....+.              ......+|+++..+.+++++++. .+..+.+||+... .   .+...    .|
T Consensus       364 ~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-~---lv~kY----~G  435 (519)
T KOG0293|consen  364 YDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN-K---LVRKY----FG  435 (519)
T ss_pred             CCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh-h---HHHHh----hc
Confidence                000000000              01123489999999999999988 9999999999742 1   11222    23


Q ss_pred             cc--cceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCc-EEEEeeccCCeEEEEeccc
Q 022019          221 QA--GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       221 ~~--~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~d~~i~vwd~~~  297 (304)
                      |.  ..+-.-+|-..+..++++||+|+.|+||+..+++++..+.||...|++++|+|..+ ++|++| +||+|++|....
T Consensus       436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASas-DDgtIRIWg~~~  514 (519)
T KOG0293|consen  436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASAS-DDGTIRIWGPSD  514 (519)
T ss_pred             ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccC-CCCeEEEecCCc
Confidence            32  22444567664557999999999999999999999999999999999999999765 577888 999999998764


Q ss_pred             c
Q 022019          298 A  298 (304)
Q Consensus       298 ~  298 (304)
                      .
T Consensus       515 ~  515 (519)
T KOG0293|consen  515 N  515 (519)
T ss_pred             c
Confidence            3

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.2e-30  Score=216.55  Aligned_cols=221  Identities=16%  Similarity=0.292  Sum_probs=183.7

Q ss_pred             cceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC
Q 022019           50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (304)
Q Consensus        50 ~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (304)
                      ...+..+..|.++|.+++|+|++.+|++|+.|..|+||+.++..+....                 .+|-..|..+.|++
T Consensus        41 ~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL-----------------~GHlDYVRt~~FHh  103 (1202)
T KOG0292|consen   41 GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL-----------------LGHLDYVRTVFFHH  103 (1202)
T ss_pred             hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-----------------ccccceeEEeeccC
Confidence            3444578899999999999999999999999999999999877654433                 34557788887744


Q ss_pred             ccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCccc
Q 022019          130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~  208 (304)
                             .--+++++|+|.+|+||++.+++++..+++|.+     -|+|..|+|....+++ +-|.+|+|||+.......
T Consensus       104 -------eyPWIlSASDDQTIrIWNwqsr~~iavltGHnH-----YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~  171 (1202)
T KOG0292|consen  104 -------EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH-----YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN  171 (1202)
T ss_pred             -------CCceEEEccCCCeEEEEeccCCceEEEEecCce-----EEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence                   555899999999999999999999999998887     9999999998888885 599999999996421100


Q ss_pred             ---e--------------e----eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce--EeEEecccc
Q 022019          209 ---E--------------K----YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQE  265 (304)
Q Consensus       209 ---~--------------~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~  265 (304)
                         .              .    -..++....+|...|.-++|+| .-.+|++|+.|..|++|....-+  .+.+..+|.
T Consensus       172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~  250 (1202)
T KOG0292|consen  172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHY  250 (1202)
T ss_pred             CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhccc
Confidence               0              0    1123455688999999999999 67799999999999999986544  466788999


Q ss_pred             CCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       266 ~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +.|.++-|+|....|++.| .|++|+|||+...+.+
T Consensus       251 nnVssvlfhp~q~lIlSns-EDksirVwDm~kRt~v  285 (1202)
T KOG0292|consen  251 NNVSSVLFHPHQDLILSNS-EDKSIRVWDMTKRTSV  285 (1202)
T ss_pred             CCcceEEecCccceeEecC-CCccEEEEecccccce
Confidence            9999999999999999999 9999999999876554

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=6e-31  Score=188.84  Aligned_cols=206  Identities=22%  Similarity=0.366  Sum_probs=169.7

Q ss_pred             CCCceeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           59 PNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        59 h~~~V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      -.+.+..++|+++ .+.+++++.||+++|||+...                .........|...|+++.|.+.      .
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~----------------s~Pi~~~kEH~~EV~Svdwn~~------~  116 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP----------------SKPIHKFKEHKREVYSVDWNTV------R  116 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCC----------------CcchhHHHhhhhheEEeccccc------c
Confidence            3567999999994 457888999999999996422                1122345567789999999764      5


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC-CcEEE-EEcCCeEEEEEcCCCCccceeeeeee
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      ++.+++++.|++|++|+...++.++++.++..     .|+...|+|. .+.++ ++.|+++++||++.+++...      
T Consensus       117 r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~-----~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~------  185 (311)
T KOG0277|consen  117 RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS-----CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS------  185 (311)
T ss_pred             ceeEEeeccCCceEeecCCCCcceEeecCCcc-----EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE------
Confidence            67788899999999999999999999887665     9999999995 55666 55999999999998643222      


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-eEeEEeccccCCeEEEEECCCC-cEEEEeeccCCeEEEE
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDG-NYLYTGGRKDPYILCW  293 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~d~~i~vw  293 (304)
                        ...|...+.++.|+..+..++++|+.|+.|+.||+++. .++..+.+|.-.|..+.|||.. ..|++++ .|-++++|
T Consensus       186 --i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSas-YDmT~riw  262 (311)
T KOG0277|consen  186 --IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASAS-YDMTVRIW  262 (311)
T ss_pred             --EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcc-ccceEEec
Confidence              26677889999999988899999999999999999985 4889999999999999999976 4677888 99999999


Q ss_pred             eccccee
Q 022019          294 DLRKAVQ  300 (304)
Q Consensus       294 d~~~~~~  300 (304)
                      |...+..
T Consensus       263 ~~~~~ds  269 (311)
T KOG0277|consen  263 DPERQDS  269 (311)
T ss_pred             ccccchh
Confidence            9986543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=5.4e-32  Score=202.66  Aligned_cols=198  Identities=17%  Similarity=0.300  Sum_probs=165.3

Q ss_pred             eeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      +.+.||++.|.|+.|.  .+.+++|+.|.+|+|||+.+++...                 ..++|...|..+.|      
T Consensus       231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~-----------------tlihHceaVLhlrf------  285 (499)
T KOG0281|consen  231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN-----------------TLIHHCEAVLHLRF------  285 (499)
T ss_pred             HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh-----------------HHhhhcceeEEEEE------
Confidence            3788999999999995  5699999999999999999887643                 34556688988888      


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeee---EEeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCccce
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLR---CTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~  209 (304)
                         ++.++++++.|.++.+||+......   ..+.+|     ...|+.+.|+  .++|++ +.|.+|++|++.+      
T Consensus       286 ---~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-----rAaVNvVdfd--~kyIVsASgDRTikvW~~st------  349 (499)
T KOG0281|consen  286 ---SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-----RAAVNVVDFD--DKYIVSASGDRTIKVWSTST------  349 (499)
T ss_pred             ---eCCEEEEecCCceeEEEeccCchHHHHHHHHhhh-----hhheeeeccc--cceEEEecCCceEEEEeccc------
Confidence               5569999999999999999875422   233333     3489999987  458884 5999999999987      


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCe
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY  289 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~  289 (304)
                        ..+.....+|...|.|+.+   .++++++|+.|.+|++||+..|.++..+.||+.-|.++.|.  .+.+++|+ .||+
T Consensus       350 --~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGa-YDGk  421 (499)
T KOG0281|consen  350 --CEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGA-YDGK  421 (499)
T ss_pred             --eeeehhhhcccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecc-ccce
Confidence              4444555888888888877   45699999999999999999999999999999999999994  67899999 9999


Q ss_pred             EEEEeccccee
Q 022019          290 ILCWDLRKAVQ  300 (304)
Q Consensus       290 i~vwd~~~~~~  300 (304)
                      |++||+.++..
T Consensus       422 ikvWdl~aald  432 (499)
T KOG0281|consen  422 IKVWDLQAALD  432 (499)
T ss_pred             EEEEecccccC
Confidence            99999988754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.6e-30  Score=195.48  Aligned_cols=206  Identities=18%  Similarity=0.289  Sum_probs=176.2

Q ss_pred             ceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      ...+.+.+|...|.+++|-|.|.++++++.|.+|+.|+++++-..+.+..                 |..-|..+.    
T Consensus       184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~-----------------h~ewvr~v~----  242 (406)
T KOG0295|consen  184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG-----------------HSEWVRMVR----  242 (406)
T ss_pred             HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccC-----------------chHhEEEEE----
Confidence            44557889999999999999999999999999999999998765444333                 334444443    


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCC---------------cEEEEE-cCC
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG---------------TKIFAG-YNK  194 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---------------~~l~~~-~d~  194 (304)
                         .+.||.++++++.|.++++|-+.++++...++.|..     +|.+++|-|..               .++.++ .|+
T Consensus       243 ---v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh-----~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk  314 (406)
T KOG0295|consen  243 ---VNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEH-----PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK  314 (406)
T ss_pred             ---ecCCeeEEEecCCCceEEEEEeccchhhhhhhcccc-----ceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence               377999999999999999999999988888887776     88899997631               366655 999


Q ss_pred             eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEEC
Q 022019          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS  274 (304)
Q Consensus       195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  274 (304)
                      +|++||+.++        .....+.+|...|..++|+| +|++|+++.+|+++++||+++.+++.++..|..-|+++.|+
T Consensus       315 tIk~wdv~tg--------~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh  385 (406)
T KOG0295|consen  315 TIKIWDVSTG--------MCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH  385 (406)
T ss_pred             eEEEEeccCC--------eEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC
Confidence            9999999884        22233378999999999999 99999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeeccCCeEEEEec
Q 022019          275 RDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       275 ~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      .+..++++|+ -|.++++|.-
T Consensus       386 ~~~p~VvTGs-Vdqt~KvwEc  405 (406)
T KOG0295|consen  386 KTAPYVVTGS-VDQTVKVWEC  405 (406)
T ss_pred             CCCceEEecc-ccceeeeeec
Confidence            9999999999 9999999975

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=5e-30  Score=188.22  Aligned_cols=228  Identities=17%  Similarity=0.185  Sum_probs=178.7

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccccccc-----c-----------cCCccceEEEe
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLA-----K-----------DQDSYEASLVV  116 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-----~-----------~~~~~~~~~~~  116 (304)
                      +..+++|+++|..+.|.+|++.+++++.|.+|+.||..+++...........     +           ..+........
T Consensus        83 ~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~  162 (338)
T KOG0265|consen   83 FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDI  162 (338)
T ss_pred             eeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEee
Confidence            4477899999999999999999999999999999999998765443222100     0           01111111111


Q ss_pred             e---------cCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcE
Q 022019          117 T---------EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK  187 (304)
Q Consensus       117 ~---------~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  187 (304)
                      .         ....++++.       |..++..+++|+-|+.|++||++.+....++.++..     .|+.+..+|+|.+
T Consensus       163 R~k~~~~t~~~kyqltAv~-------f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-----tIt~lsls~~gs~  230 (338)
T KOG0265|consen  163 RKKEAIKTFENKYQLTAVG-------FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-----TITGLSLSRYGSF  230 (338)
T ss_pred             cccchhhccccceeEEEEE-------ecccccceeeccccCceeeeccccCcceEEeecccC-----ceeeEEeccCCCc
Confidence            1         123444444       477888899999999999999999999999988776     9999999999999


Q ss_pred             EEE-EcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC
Q 022019          188 IFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG  266 (304)
Q Consensus       188 l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  266 (304)
                      +.+ +.|.++++||++.-......+................++|+| ++..+.+|+.|..+++||......+..+.||.+
T Consensus       231 llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g  309 (338)
T KOG0265|consen  231 LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFVYVWDTTSRRILYKLPGHYG  309 (338)
T ss_pred             cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-CCCccccccccceEEEeecccccEEEEcCCcce
Confidence            996 599999999998644443434444443333344467889999 788999999999999999998899999999999


Q ss_pred             CeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          267 GVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       267 ~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      .|.++.|+|...+|.+++ .|.+|++=+
T Consensus       310 svn~~~Fhp~e~iils~~-sdk~i~lge  336 (338)
T KOG0265|consen  310 SVNEVDFHPTEPIILSCS-SDKTIYLGE  336 (338)
T ss_pred             eEEEeeecCCCcEEEEec-cCceeEeec
Confidence            999999999999999999 999998744

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.4e-29  Score=183.81  Aligned_cols=229  Identities=17%  Similarity=0.254  Sum_probs=176.0

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccc---------------------------cccC
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSL---------------------------AKDQ  107 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~---------------------------~~~~  107 (304)
                      .+..-.+.|+++.|+++|.+|++++.|.+++|||..+++....+.....                           ..-.
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~   88 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH   88 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence            3444567899999999999999999999999999988876444333211                           1112


Q ss_pred             CccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcE
Q 022019          108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK  187 (304)
Q Consensus       108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  187 (304)
                      ++...+...+|...|..++.       +|-+..+++++.|++|++||++..++...+.....       ..++|+|+|-+
T Consensus        89 dNkylRYF~GH~~~V~sL~~-------sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-------pi~AfDp~GLi  154 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSV-------SPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-------PIAAFDPEGLI  154 (311)
T ss_pred             cCceEEEcCCCCceEEEEEe-------cCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-------cceeECCCCcE
Confidence            33333445566677777765       77788999999999999999998777766655432       36899999999


Q ss_pred             EEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC
Q 022019          188 IFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG  266 (304)
Q Consensus       188 l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  266 (304)
                      +|++ ....|++||+|.-+........+.   .+.....+.+.|+| +|+.++.++..+.+++.|.-.|..+.++.++..
T Consensus       155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~---~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~  230 (311)
T KOG1446|consen  155 FALANGSELIKLYDLRSFDKGPFTTFSIT---DNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN  230 (311)
T ss_pred             EEEecCCCeEEEEEecccCCCCceeEccC---CCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC
Confidence            9977 445999999997533222212221   23455689999999 788888899999999999999999999987765


Q ss_pred             Ce---EEEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          267 GV---THVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       267 ~v---~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      .-   .+..|+||++++++|+ .||+|.+|++++|+++.
T Consensus       231 ~~~~~~~a~ftPds~Fvl~gs-~dg~i~vw~~~tg~~v~  268 (311)
T KOG1446|consen  231 AGNLPLSATFTPDSKFVLSGS-DDGTIHVWNLETGKKVA  268 (311)
T ss_pred             CCCcceeEEECCCCcEEEEec-CCCcEEEEEcCCCcEee
Confidence            42   6788999999999999 99999999999998764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=9.9e-31  Score=212.80  Aligned_cols=240  Identities=15%  Similarity=0.185  Sum_probs=191.5

Q ss_pred             hcHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCC-CeEEEecCCCeEEEeeCCCCCCccccc
Q 022019           21 VTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVN   99 (304)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~   99 (304)
                      +..+++.|.....|+.   +-...+    .-.+....+|.+.|.+++++..+ .+|+++|.|+++++|++...+....  
T Consensus       379 llat~sKD~svilWr~---~~~~~~----~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--  449 (775)
T KOG0319|consen  379 LLATGSKDKSVILWRL---NNNCSK----SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--  449 (775)
T ss_pred             EEEEecCCceEEEEEe---cCCcch----hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--
Confidence            4556677777777754   111111    12234678999999999998744 5899999999999999975211100  


Q ss_pred             cccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEE
Q 022019          100 ACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSV  179 (304)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i  179 (304)
                      ..      ..........|...|.+++.       +|+..++++||.|++.+||++.......++.+|..     .|+++
T Consensus       450 ~~------~~~~~~t~~aHdKdIN~Vai-------a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R-----Gvw~V  511 (775)
T KOG0319|consen  450 PI------VLTCRYTERAHDKDINCVAI-------APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR-----GVWCV  511 (775)
T ss_pred             cc------eehhhHHHHhhcccccceEe-------cCCCceEEecccccceeeecccCceEEEEeeCCcc-----ceEEE
Confidence            00      00001123457778888866       78999999999999999999999888899988776     99999


Q ss_pred             EECCCCcEEEE-EcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEe
Q 022019          180 AFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL  258 (304)
Q Consensus       180 ~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~  258 (304)
                      .|+|..+.+++ +.|.+|+||.+.+        ......+.+|...|..+.|-. ++..|++++.||.|++|+++++.++
T Consensus       512 ~Fs~~dq~laT~SgD~TvKIW~is~--------fSClkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWnikt~eC~  582 (775)
T KOG0319|consen  512 SFSKNDQLLATCSGDKTVKIWSIST--------FSCLKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNIKTNECE  582 (775)
T ss_pred             EeccccceeEeccCCceEEEEEecc--------ceeeeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEeccchhhh
Confidence            99999999995 5999999999987        333334489999999999999 7789999999999999999999999


Q ss_pred             EEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          259 YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       259 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      .++.+|...|++++-+|.+.+++||+ .||.|.+|.=.+
T Consensus       583 ~tlD~H~DrvWaL~~~~~~~~~~tgg-~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  583 MTLDAHNDRVWALSVSPLLDMFVTGG-GDGRIIFWKDVT  620 (775)
T ss_pred             hhhhhccceeEEEeecCccceeEecC-CCeEEEEeecCc
Confidence            99999999999999999999999999 999999996443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=3.2e-31  Score=205.96  Aligned_cols=232  Identities=19%  Similarity=0.265  Sum_probs=180.5

Q ss_pred             hcHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccc
Q 022019           21 VTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA  100 (304)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~  100 (304)
                      +..+++.+...++|.+     -.     ..+.++++.+|+.+|.+++|+++|..|+|++.|+.|++||++++...     
T Consensus       229 LlLS~gmD~~vklW~v-----y~-----~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~-----  293 (503)
T KOG0282|consen  229 LLLSGGMDGLVKLWNV-----YD-----DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL-----  293 (503)
T ss_pred             EEEecCCCceEEEEEE-----ec-----CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE-----
Confidence            3344555555555543     22     22345588899999999999999999999999999999999987653     


Q ss_pred             ccccccCCccceEEEeecCCeEEEEeecCccceeCCCc-cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEE
Q 022019          101 CSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSV  179 (304)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i  179 (304)
                                   ..+..+..++++.|+|       ++ +.|++|+.|+.|+.||+++++.++.+..+-.     .|..+
T Consensus       294 -------------~~f~~~~~~~cvkf~p-------d~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg-----~i~~i  348 (503)
T KOG0282|consen  294 -------------SRFHLDKVPTCVKFHP-------DNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG-----AILDI  348 (503)
T ss_pred             -------------EEEecCCCceeeecCC-------CCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh-----heeee
Confidence                         3344456677777755       54 7899999999999999999998877765554     89999


Q ss_pred             EECCCCcEEEE-EcCCeEEEEEcCCCCccc-------------------------------eeee-------eeeccccc
Q 022019          180 AFNPTGTKIFA-GYNKSVRVFDVHRPGRDF-------------------------------EKYS-------TLKGNKEG  220 (304)
Q Consensus       180 ~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~-------------------------------~~~~-------~~~~~~~~  220 (304)
                      .|-++|+.+++ +.|++++||+.+.+-...                               ..+.       .....+.+
T Consensus       349 ~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG  428 (503)
T KOG0282|consen  349 TFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG  428 (503)
T ss_pred             EEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc
Confidence            99999999995 499999999987642100                               0000       00012233


Q ss_pred             cc--cceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCC-cEEEEeeccCCeEEEEe
Q 022019          221 QA--GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG-NYLYTGGRKDPYILCWD  294 (304)
Q Consensus       221 ~~--~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~d~~i~vwd  294 (304)
                      |.  +.-..+.||| ++.+|++|+.||.+.+||.++-+.+..+++|.+.+..+.|+|.. ..+++++ .||.|++||
T Consensus       429 h~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~-w~G~Ikiwd  503 (503)
T KOG0282|consen  429 HSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCG-WDGLIKIWD  503 (503)
T ss_pred             eeccCceeeEEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecc-cCceeEecC
Confidence            43  3356789999 78899999999999999999999999999999999999999965 4688888 999999996

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=4.6e-29  Score=187.71  Aligned_cols=224  Identities=13%  Similarity=0.212  Sum_probs=178.0

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      ..++|+...+....      .+.+|++.|+++.|+.+|.+||||+.+|.|+||+..++.....+                
T Consensus        87 ~AflW~~~~ge~~~------eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~----------------  144 (399)
T KOG0296|consen   87 LAFLWDISTGEFAG------ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL----------------  144 (399)
T ss_pred             eEEEEEccCCccee------EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe----------------
Confidence            34567766665333      78899999999999999999999999999999999876442221                


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  193 (304)
                       ......+.=++|       +|-+..|+.|+.||.+.+|.+.++...+.+..+..     ++++=.|.|+|+.++++ .|
T Consensus       145 -~~e~~dieWl~W-------Hp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~-----~ct~G~f~pdGKr~~tgy~d  211 (399)
T KOG0296|consen  145 -DQEVEDIEWLKW-------HPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS-----PCTCGEFIPDGKRILTGYDD  211 (399)
T ss_pred             -ecccCceEEEEe-------cccccEEEeecCCCcEEEEECCCcceeeEecCCCC-----CcccccccCCCceEEEEecC
Confidence             122244555666       55677999999999999999998777777777665     89999999999999987 99


Q ss_pred             CeEEEEEcCCCCccceee---------------------------------------eeee-------------------
Q 022019          194 KSVRVFDVHRPGRDFEKY---------------------------------------STLK-------------------  215 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~---------------------------------------~~~~-------------------  215 (304)
                      |+|++|+..+........                                       ....                   
T Consensus       212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~  291 (399)
T KOG0296|consen  212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES  291 (399)
T ss_pred             ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence            999999997643111000                                       0000                   


Q ss_pred             -----------------------------ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC
Q 022019          216 -----------------------------GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG  266 (304)
Q Consensus       216 -----------------------------~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  266 (304)
                                                   ...-.|..+|+.+.|-+  ..+|++++.||.|+.||.++|++..++.||..
T Consensus       292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~  369 (399)
T KOG0296|consen  292 IPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQM  369 (399)
T ss_pred             cccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCch
Confidence                                         01123555688899987  44889999999999999999999999999999


Q ss_pred             CeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       267 ~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      .|.+++++|++++++|++ .|++.+||++.
T Consensus       370 ~Il~f~ls~~~~~vvT~s-~D~~a~VF~v~  398 (399)
T KOG0296|consen  370 GILDFALSPQKRLVVTVS-DDNTALVFEVP  398 (399)
T ss_pred             heeEEEEcCCCcEEEEec-CCCeEEEEecC
Confidence            999999999999999999 99999999874

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.2e-30  Score=209.85  Aligned_cols=219  Identities=21%  Similarity=0.286  Sum_probs=176.4

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+.||...|.++....+|.+|+||+.|.++++|.++++...             .........|...|.+++....    
T Consensus       360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~-------------~~~~a~~~gH~~svgava~~~~----  422 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK-------------SLCVAQANGHTNSVGAVAGSKL----  422 (775)
T ss_pred             EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch-------------hhhhhhhcccccccceeeeccc----
Confidence            67899999999996667889999999999999998433221             1111133456677888877332    


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeE---Eeec-ccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRC---TYRA-YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                        .-..|+++|.|+++++|++...+...   .+.. .....|...|++++++|+.+++++| .|.+.+||++..      
T Consensus       423 --~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~------  494 (775)
T KOG0319|consen  423 --GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ------  494 (775)
T ss_pred             --CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC------
Confidence              22479999999999999998622211   1110 0112345589999999999999976 999999999974      


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCe
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY  289 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~  289 (304)
                        ..+...+.+|...+.++.|+| ..++++++|.|.+|+||.+.+..++.+|.||...|..+.|-.+|+.|++++ .||-
T Consensus       495 --~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~-adGl  570 (775)
T KOG0319|consen  495 --LRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG-ADGL  570 (775)
T ss_pred             --ceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc-CCCc
Confidence              444555589999999999999 778999999999999999999999999999999999999999999999999 9999


Q ss_pred             EEEEecccceeee
Q 022019          290 ILCWDLRKAVQVV  302 (304)
Q Consensus       290 i~vwd~~~~~~~~  302 (304)
                      |++|++++++|+.
T Consensus       571 iKlWnikt~eC~~  583 (775)
T KOG0319|consen  571 IKLWNIKTNECEM  583 (775)
T ss_pred             EEEEeccchhhhh
Confidence            9999999988763

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=9.9e-29  Score=195.46  Aligned_cols=208  Identities=27%  Similarity=0.384  Sum_probs=172.0

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+.+|.++|++++|+|++++|++++.||.+++|++.++..                 ......+...+..+.|       
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-----------------~~~~~~~~~~i~~~~~-------   59 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-----------------LRTLKGHTGPVRDVAA-------   59 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-----------------EEEEecCCcceeEEEE-------
Confidence            5678999999999999999999999999999999985532                 1122334456667777       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      +|+++.+++++.||.|++||+.+++....+..+..     .+.++.|+|++++++++ .++.|++||++...    ....
T Consensus        60 ~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~  130 (289)
T cd00200          60 SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS-----YVSSVAFSPDGRILSSSSRDKTIKVWDVETGK----CLTT  130 (289)
T ss_pred             CCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCC-----cEEEEEEcCCCCEEEEecCCCeEEEEECCCcE----EEEE
Confidence            66778999999999999999998777766665443     79999999998888877 59999999997521    1111


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEE
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW  293 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vw  293 (304)
                          ...|...+.+++|+| ++.++++++.||.|++||++.++++..+..|...+.++.|+|+++.+++++ .|+.|++|
T Consensus       131 ----~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~  204 (289)
T cd00200         131 ----LRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKLW  204 (289)
T ss_pred             ----eccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-CCCcEEEE
Confidence                235677899999999 577888888899999999999999999999998999999999999999999 89999999


Q ss_pred             ecccceee
Q 022019          294 DLRKAVQV  301 (304)
Q Consensus       294 d~~~~~~~  301 (304)
                      |+++++.+
T Consensus       205 d~~~~~~~  212 (289)
T cd00200         205 DLSTGKCL  212 (289)
T ss_pred             ECCCCcee
Confidence            99876544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.6e-29  Score=204.37  Aligned_cols=210  Identities=20%  Similarity=0.394  Sum_probs=174.4

Q ss_pred             ceeeeecCCCCceeEEEEcCCCCeEEEecC-CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (304)
                      ..++.+.-...+|..+.|+..|.+||.|+. =|.+.||++..+....+..                 +|-..+.++++  
T Consensus       298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ-----------------gH~~~i~~l~Y--  358 (893)
T KOG0291|consen  298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ-----------------GHSDRITSLAY--  358 (893)
T ss_pred             eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc-----------------ccccceeeEEE--
Confidence            344456666678999999999999999876 4899999998765543322                 34467888877  


Q ss_pred             ccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCccc
Q 022019          130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~  208 (304)
                           +|||+++++|++||.|+|||..++-+..++..|..     .|+.+.|+..|+.+++ +.||+|+.||+... +.+
T Consensus       359 -----SpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts-----~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNf  427 (893)
T KOG0291|consen  359 -----SPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS-----GVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNF  427 (893)
T ss_pred             -----CCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC-----ceEEEEEEecCCEEEEeecCCeEEeeeeccc-cee
Confidence                 88999999999999999999999999999998776     9999999999999995 49999999999752 222


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEecCCe-EEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccC
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD  287 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d  287 (304)
                         .++.   ........+++..| .+.++++|+.|.. |.+|+.++|+.+..+.||+++|.+++|+|+|..|++++ .|
T Consensus       428 ---RTft---~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S-WD  499 (893)
T KOG0291|consen  428 ---RTFT---SPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS-WD  499 (893)
T ss_pred             ---eeec---CCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc-cc
Confidence               2222   22233467899999 7878888888865 99999999999999999999999999999999999999 99


Q ss_pred             CeEEEEecccc
Q 022019          288 PYILCWDLRKA  298 (304)
Q Consensus       288 ~~i~vwd~~~~  298 (304)
                      .+|++||+-..
T Consensus       500 kTVRiW~if~s  510 (893)
T KOG0291|consen  500 KTVRIWDIFSS  510 (893)
T ss_pred             ceEEEEEeecc
Confidence            99999998543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.4e-30  Score=187.01  Aligned_cols=207  Identities=20%  Similarity=0.313  Sum_probs=170.2

Q ss_pred             eeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           53 FRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      ++.++.|...|.++.|++ ++..+++++.|++|++|+......                 .....+|...|+...|+|. 
T Consensus        97 i~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S-----------------v~Tf~gh~~~Iy~a~~sp~-  158 (311)
T KOG0277|consen   97 IHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS-----------------VQTFNGHNSCIYQAAFSPH-  158 (311)
T ss_pred             hhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc-----------------eEeecCCccEEEEEecCCC-
Confidence            447788999999999999 677888999999999999863322                 2245567789999999887 


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCC-cEEEEE-cCCeEEEEEcCCCCccce
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                           ..+++++++.|+++++||++..-....++.|..     .+.++.|+.-. +.+++| .|+.|++||++.-.    
T Consensus       159 -----~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~-----Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----  224 (311)
T KOG0277|consen  159 -----IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS-----EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----  224 (311)
T ss_pred             -----CCCeEEEccCCceEEEEEecCCCceeEEEeccc-----eeEeecccccCCcEEEecCCCceEEEEehhhcc----
Confidence                 456999999999999999986544445776664     89999999855 555566 99999999998753    


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC-ceEeEEeccccCCeEEEEECC-CCcEEEEeeccC
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVQFSR-DGNYLYTGGRKD  287 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~d  287 (304)
                         +......+|.-.|+.++|+|....+|++++.|=+++|||... ...+.+...|..-+..+.|++ ++.++|+++ -|
T Consensus       225 ---~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g-WD  300 (311)
T KOG0277|consen  225 ---TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG-WD  300 (311)
T ss_pred             ---ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc-cc
Confidence               333444789999999999998888999999999999999874 446777778888999999988 567899999 99


Q ss_pred             CeEEEEec
Q 022019          288 PYILCWDL  295 (304)
Q Consensus       288 ~~i~vwd~  295 (304)
                      +.++||+.
T Consensus       301 e~l~Vw~p  308 (311)
T KOG0277|consen  301 ELLYVWNP  308 (311)
T ss_pred             cceeeecc
Confidence            99999985

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=5.1e-30  Score=183.83  Aligned_cols=203  Identities=20%  Similarity=0.310  Sum_probs=169.2

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      .|+.-|..++|+.|.++|+||+.+..+||||++..+....                -...|...|..+.|..       .
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~----------------E~~ghtg~Ir~v~wc~-------e  154 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK----------------EISGHTGGIRTVLWCH-------E  154 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch----------------hhcCCCCcceeEEEec-------c
Confidence            5888899999999999999999999999999975433211                2234557788887742       4


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeecc
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN  217 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  217 (304)
                      .+.|++.++|++|++||.+++..++++....      +|+++.++++|++|..+..+.|.+||...-       ..++. 
T Consensus       155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s------~VtSlEvs~dG~ilTia~gssV~Fwdaksf-------~~lKs-  220 (334)
T KOG0278|consen  155 DKCILSSADDKTVRLWDHRTGTEVQSLEFNS------PVTSLEVSQDGRILTIAYGSSVKFWDAKSF-------GLLKS-  220 (334)
T ss_pred             CceEEeeccCCceEEEEeccCcEEEEEecCC------CCcceeeccCCCEEEEecCceeEEeccccc-------cceee-
Confidence            4567777999999999999999999988766      899999999999999999999999999763       11211 


Q ss_pred             ccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEe-ccccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       218 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                       ......|.+..++| ...++++|++|..++.||..+++.+..+ ++|.++|.++.|+|+|..-++|+ .||+|++|.+.
T Consensus       221 -~k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS-EDGTirlWQt~  297 (334)
T KOG0278|consen  221 -YKMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS-EDGTIRLWQTT  297 (334)
T ss_pred             -ccCccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC-CCceEEEEEec
Confidence             11234488999999 6689999999999999999999988886 89999999999999999999999 99999999987


Q ss_pred             ccee
Q 022019          297 KAVQ  300 (304)
Q Consensus       297 ~~~~  300 (304)
                      .++.
T Consensus       298 ~~~~  301 (334)
T KOG0278|consen  298 PGKT  301 (334)
T ss_pred             CCCc
Confidence            6653

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=5.1e-28  Score=201.99  Aligned_cols=216  Identities=13%  Similarity=0.162  Sum_probs=154.7

Q ss_pred             eeeeecCCCCceeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           52 QFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        52 ~~~~~~~h~~~V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      .+..+.+|.+.|.+++|+|+ +.+|+||+.||+|+|||+.++......         ..........|...|.+++|   
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---------i~~p~~~L~gH~~~V~sVaf---  133 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---------IKDPQCILKGHKKKISIIDW---  133 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc---------cccceEEeecCCCcEEEEEE---
Confidence            34578899999999999996 789999999999999999754221000         00111234567788999999   


Q ss_pred             cceeCCCcc-EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccc
Q 022019          131 MSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       131 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~  208 (304)
                          +|++. ++++++.|++|++||+++++....+..+      ..|.+++|+|+|.+|+++ .|+.|+|||++... . 
T Consensus       134 ----~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~------~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-~-  201 (568)
T PTZ00420        134 ----NPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP------KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-I-  201 (568)
T ss_pred             ----CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC------CcEEEEEECCCCCEEEEEecCCEEEEEECCCCc-E-
Confidence                45554 4678999999999999998876655422      279999999999999965 89999999998742 1 


Q ss_pred             eeeeeeeccccccccceeE-----EEeecCCCcEEEEEecCC----eEEEEecCC-ceEeEEec--cccCCeEEEEECCC
Q 022019          209 EKYSTLKGNKEGQAGIMSA-----IAFSPTHTGMLAIGSYSQ----TSAIYREDN-MELLYVLH--GQEGGVTHVQFSRD  276 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~-----~~~~p~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~--~~~~~v~~~~~~~~  276 (304)
                        ...    ..+|.+.+.+     ..|++ ++.+|++++.|+    .|+|||+++ .+++..+.  .+.+.+......++
T Consensus       202 --i~t----l~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~t  274 (568)
T PTZ00420        202 --ASS----FHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDEST  274 (568)
T ss_pred             --EEE----EecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCC
Confidence              112    2455554332     33557 555777766664    799999995 55665554  23333444444566


Q ss_pred             CcEEEEeeccCCeEEEEecccce
Q 022019          277 GNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       277 ~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      |.++++|+ .|+.|++|++..+.
T Consensus       275 g~l~lsGk-GD~tIr~~e~~~~~  296 (568)
T PTZ00420        275 GLIYLIGK-GDGNCRYYQHSLGS  296 (568)
T ss_pred             CCEEEEEE-CCCeEEEEEccCCc
Confidence            88888898 99999999997763

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.3e-28  Score=219.21  Aligned_cols=210  Identities=20%  Similarity=0.317  Sum_probs=165.0

Q ss_pred             ecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC
Q 022019           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (304)
                      +..|.+.|++++|+|+|++||+|+.|+.|+||++........          ..........+...+.+++|.|.     
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~----------~~~~~~~~~~~~~~v~~l~~~~~-----  543 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR----------DIHYPVVELASRSKLSGICWNSY-----  543 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc----------ccccceEEecccCceeeEEeccC-----
Confidence            446999999999999999999999999999999764211000          00011122333467888888542     


Q ss_pred             CCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECC-CCcEEEEE-cCCeEEEEEcCCCCccceeeee
Q 022019          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       136 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                       ++.+|++++.||+|++||+.+++....+..|..     .|++++|+| ++.+|++| .|+.|++||++...    ....
T Consensus       544 -~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~-----~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~----~~~~  613 (793)
T PLN00181        544 -IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK-----RVWSIDYSSADPTLLASGSDDGSVKLWSINQGV----SIGT  613 (793)
T ss_pred             -CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC-----CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc----EEEE
Confidence             467899999999999999999888877776654     899999997 67888865 99999999998632    1122


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce-EeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                      +    .. ...+.++.|++.++.+|++|+.||.|++||+++.+ ++..+.+|...|.++.|. ++.+|++++ .|++|++
T Consensus       614 ~----~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~iki  686 (793)
T PLN00181        614 I----KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKL  686 (793)
T ss_pred             E----ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEE
Confidence            2    11 24588999976578899999999999999998765 577888999999999997 788999999 9999999


Q ss_pred             Eeccc
Q 022019          293 WDLRK  297 (304)
Q Consensus       293 wd~~~  297 (304)
                      ||++.
T Consensus       687 Wd~~~  691 (793)
T PLN00181        687 WDLSM  691 (793)
T ss_pred             EeCCC
Confidence            99975

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.3e-29  Score=182.71  Aligned_cols=220  Identities=20%  Similarity=0.333  Sum_probs=180.3

Q ss_pred             eeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      +...+|...|.+++|+.+|..|++|+.|+++++|++........               ....+|...|-.++|.|.   
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~---------------~~~~gh~~svdql~w~~~---   75 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE---------------LVYRGHTDSVDQLCWDPK---   75 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh---------------hcccCCCcchhhheeCCC---
Confidence            46678999999999999999999999999999999975422111               133456678899999876   


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccc----
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDF----  208 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~----  208 (304)
                         ....|++++.|.+|++||++.+++........      .=.-+.|+|+|.+++++ .|..|.+.|.++.....    
T Consensus        76 ---~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~  146 (313)
T KOG1407|consen   76 ---HPDLFATASGDKTIRIWDIRSGKCTARIETKG------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF  146 (313)
T ss_pred             ---CCcceEEecCCceEEEEEeccCcEEEEeeccC------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc
Confidence               34489999999999999999999988776554      22468999999999976 99999999987632100    


Q ss_pred             -------------------------eeee----eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeE
Q 022019          209 -------------------------EKYS----TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY  259 (304)
Q Consensus       209 -------------------------~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~  259 (304)
                                               ..+.    .......+|.....|+.|+| .++++|+|+.|..+.+||+...-++.
T Consensus       147 ~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R  225 (313)
T KOG1407|consen  147 KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICER  225 (313)
T ss_pred             cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhhe
Confidence                                     0000    01124467888889999999 88899999999999999999999999


Q ss_pred             EeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          260 VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       260 ~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      .+..+.-+|..++||.||++||+++ .|-.|-|=++.+|.++.
T Consensus       226 ~isRldwpVRTlSFS~dg~~lASaS-EDh~IDIA~vetGd~~~  267 (313)
T KOG1407|consen  226 CISRLDWPVRTLSFSHDGRMLASAS-EDHFIDIAEVETGDRVW  267 (313)
T ss_pred             eeccccCceEEEEeccCcceeeccC-ccceEEeEecccCCeEE
Confidence            9999999999999999999999999 99999999999998763

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.8e-29  Score=207.42  Aligned_cols=215  Identities=20%  Similarity=0.299  Sum_probs=173.9

Q ss_pred             ceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      +++..+.||.+.|.+|.||.++ +|++++.|.+||||++....                  +...+.|..-|+|++|+|.
T Consensus       360 kP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~------------------CL~~F~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  360 KPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKE------------------CLKVFSHNDFVTCVAFNPV  420 (712)
T ss_pred             cchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcc------------------eeeEEecCCeeEEEEeccc
Confidence            5677889999999999999655 99999999999999987443                  3367889999999999987


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                            |.++|++|+-||.|+||++...+...-...+.      -|++++|.|+|+..++| .+|.+++|+.+...-...
T Consensus       421 ------DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~------lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  421 ------DDRYFISGSLDGKVRLWSISDKKVVDWNDLRD------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             ------CCCcEeecccccceEEeecCcCeeEeehhhhh------hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence                  88899999999999999998877665554443      89999999999999987 999999999976322111


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC--CeEEEEECCCCcEEEEeeccC
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG--GVTHVQFSRDGNYLYTGGRKD  287 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~d  287 (304)
                      ...............|+++.|.|.....+++.+.|..|+|||.+...++..|+|+..  .=....|+.||++|++++ +|
T Consensus       489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s-eD  567 (712)
T KOG0283|consen  489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS-ED  567 (712)
T ss_pred             eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee-cC
Confidence            111111111222237999999996666788889999999999999999999987654  346788999999999999 99


Q ss_pred             CeEEEEeccc
Q 022019          288 PYILCWDLRK  297 (304)
Q Consensus       288 ~~i~vwd~~~  297 (304)
                      ..|++|+...
T Consensus       568 s~VYiW~~~~  577 (712)
T KOG0283|consen  568 SWVYIWKNDS  577 (712)
T ss_pred             ceEEEEeCCC
Confidence            9999999743

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.4e-29  Score=206.92  Aligned_cols=221  Identities=18%  Similarity=0.279  Sum_probs=163.1

Q ss_pred             eec-CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCc--------------------------c-ccccc-----
Q 022019           55 TSS-IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS--------------------------Y-DVNAC-----  101 (304)
Q Consensus        55 ~~~-~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~--------------------------~-~~~~~-----  101 (304)
                      .+. +|.+.|++|.||+||+|||+||.||.|+||.+.+.+..                          . .....     
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            444 89999999999999999999999999999998761110                          0 00000     


Q ss_pred             -----------cccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccccc
Q 022019          102 -----------SLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV  170 (304)
Q Consensus       102 -----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  170 (304)
                                 ...........+...+|...|.++.|.        .+++|++++.|.+|++|++...+++..+....  
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--------Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hnd--  410 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--------KNNFLLSSSMDKTVRLWHPGRKECLKVFSHND--  410 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccc--------cCCeeEeccccccEEeecCCCcceeeEEecCC--
Confidence                       000000111123355677888888883        45689999999999999999999998886544  


Q ss_pred             ccccceEEEEECC-CCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEE
Q 022019          171 DEITAAFSVAFNP-TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSA  248 (304)
Q Consensus       171 ~~~~~v~~i~~~~-~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~  248 (304)
                          .|+|++|+| |.+++++| -||.|+||++...        .+... ......|++++|.| +|+..++|+.+|.++
T Consensus       411 ----fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~--------~Vv~W-~Dl~~lITAvcy~P-dGk~avIGt~~G~C~  476 (712)
T KOG0283|consen  411 ----FVTCVAFNPVDDRYFISGSLDGKVRLWSISDK--------KVVDW-NDLRDLITAVCYSP-DGKGAVIGTFNGYCR  476 (712)
T ss_pred             ----eeEEEEecccCCCcEeecccccceEEeecCcC--------eeEee-hhhhhhheeEEecc-CCceEEEEEeccEEE
Confidence                999999999 67888877 9999999999752        11111 22236699999999 688999999999999


Q ss_pred             EEecCCceEeEEecc--c------cCCeEEEEECCCCc-EEEEeeccCCeEEEEeccccee
Q 022019          249 IYREDNMELLYVLHG--Q------EGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       249 i~d~~~~~~~~~~~~--~------~~~v~~~~~~~~~~-~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      +|+....+....+..  |      ...|+.+.|.|... .|++.+ .|..|+|+|.++...
T Consensus       477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrIRI~d~~~~~l  536 (712)
T KOG0283|consen  477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-NDSRIRIYDGRDKDL  536 (712)
T ss_pred             EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec-CCCceEEEeccchhh
Confidence            999998877665531  1      12799999987543 355555 699999999966543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=7.7e-29  Score=179.32  Aligned_cols=230  Identities=17%  Similarity=0.239  Sum_probs=179.3

Q ss_pred             chhhcHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccc
Q 022019           18 DTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD   97 (304)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~   97 (304)
                      ...+.-++..+.....|-     ...+..+      -++.||.+.|+|++.+-+.++++||+.|.++++||+.+++..  
T Consensus        21 eGDLlFscaKD~~~~vw~-----s~nGerl------Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l--   87 (327)
T KOG0643|consen   21 EGDLLFSCAKDSTPTVWY-----SLNGERL------GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL--   87 (327)
T ss_pred             CCcEEEEecCCCCceEEE-----ecCCcee------eeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE--
Confidence            344455556666555553     1233333      378999999999999999999999999999999999988654  


Q ss_pred             cccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeC-----CCCEEEEEcCC-------CeeeEEee
Q 022019           98 VNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-----DHPIHLWDATT-------GLLRCTYR  165 (304)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~-------~~~~~~~~  165 (304)
                                      .....+.+|..+.|       +++|++++.+.+     .+.|.++|++.       .++...+.
T Consensus        88 ----------------a~~k~~~~Vk~~~F-------~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~  144 (327)
T KOG0643|consen   88 ----------------ATWKTNSPVKRVDF-------SFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP  144 (327)
T ss_pred             ----------------EEeecCCeeEEEee-------ccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence                            33444567777776       778888777754     46799999983       34455555


Q ss_pred             cccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC
Q 022019          166 AYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS  244 (304)
Q Consensus       166 ~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  244 (304)
                      .+..     .++.+-|.|-+++|++| .||.|.+||++++       ..+......|...|+.++++| +..++++++.|
T Consensus       145 t~~s-----kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g-------~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~D  211 (327)
T KOG0643|consen  145 TPDS-----KITSALWGPLGETIIAGHEDGSISIYDARTG-------KELVDSDEEHSSKINDLQFSR-DRTYFITGSKD  211 (327)
T ss_pred             CCcc-----ceeeeeecccCCEEEEecCCCcEEEEEcccC-------ceeeechhhhccccccccccC-CcceEEecccC
Confidence            5443     88999999999999988 9999999999975       333444466788899999999 78899999999


Q ss_pred             CeEEEEecCCceEeEE-------------------------------------------------------eccccCCeE
Q 022019          245 QTSAIYREDNMELLYV-------------------------------------------------------LHGQEGGVT  269 (304)
Q Consensus       245 g~i~i~d~~~~~~~~~-------------------------------------------------------~~~~~~~v~  269 (304)
                      .+-++||.++.+.+++                                                       +++|-++|+
T Consensus       212 ttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPIN  291 (327)
T KOG0643|consen  212 TTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPIN  291 (327)
T ss_pred             ccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcc
Confidence            9999999876543332                                                       457889999


Q ss_pred             EEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          270 HVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       270 ~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      +++|+|+|+..++|+ .||.|++.-+..
T Consensus       292 svAfhPdGksYsSGG-EDG~VR~h~Fd~  318 (327)
T KOG0643|consen  292 SVAFHPDGKSYSSGG-EDGYVRLHHFDS  318 (327)
T ss_pred             eeEECCCCcccccCC-CCceEEEEEecc
Confidence            999999999999999 999999986643

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.2e-29  Score=201.77  Aligned_cols=210  Identities=18%  Similarity=0.285  Sum_probs=181.4

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+..|...|.++.|+|...+++++-..|.|.|||.++......+..+.                 .+|....|.      
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~-----------------~PvRa~kfi------   64 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE-----------------VPVRAAKFI------   64 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc-----------------cchhhheee------
Confidence            344589999999999999999999999999999998776544433322                 455555552      


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                       +--+++++|++|+.|++|+..+++.+..+..|..     -|.+++.+|...+++++ .|-.|++||.+..       ..
T Consensus        65 -aRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D-----yIR~iavHPt~P~vLtsSDDm~iKlW~we~~-------wa  131 (794)
T KOG0276|consen   65 -ARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD-----YIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-------WA  131 (794)
T ss_pred             -eccceEEEecCCceEEEEecccceeeEEeecccc-----ceeeeeecCCCCeEEecCCccEEEEeeccCc-------ee
Confidence             3455899999999999999999999999998886     89999999999999966 8899999999763       44


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCC--CcEEEEeeccCCeEE
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD--GNYLYTGGRKDPYIL  291 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~d~~i~  291 (304)
                      ....+.+|...|.+++|+|.+...+++++-|++|++|.+.+..+.+++.+|...|+++.+-+-  .++|++|+ +|.+|+
T Consensus       132 ~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-DD~tiK  210 (794)
T KOG0276|consen  132 CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-DDLTIK  210 (794)
T ss_pred             eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-CCceEE
Confidence            455568999999999999999999999999999999999999999999999999999999764  47999999 999999


Q ss_pred             EEecccceee
Q 022019          292 CWDLRKAVQV  301 (304)
Q Consensus       292 vwd~~~~~~~  301 (304)
                      |||..+..|+
T Consensus       211 vWDyQtk~CV  220 (794)
T KOG0276|consen  211 VWDYQTKSCV  220 (794)
T ss_pred             EeecchHHHH
Confidence            9999998775

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=3.2e-28  Score=191.33  Aligned_cols=224  Identities=20%  Similarity=0.379  Sum_probs=173.6

Q ss_pred             eeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      ..+..|...|.|++|+|||.+|+|++.||.+.+||=.+++....+..              ...|...|+.+.|      
T Consensus       184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~--------------~~aHkGsIfalsW------  243 (603)
T KOG0318|consen  184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED--------------SDAHKGSIFALSW------  243 (603)
T ss_pred             ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC--------------CCCccccEEEEEE------
Confidence            36788999999999999999999999999999999888766544332              2356789999999      


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccc--------------------------------------cccccc
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA--------------------------------------VDEITA  175 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------------------------------------~~~~~~  175 (304)
                       +||+..+++++.|.+++|||+.+.+++.++.....                                      .+|...
T Consensus       244 -sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~  322 (603)
T KOG0318|consen  244 -SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS  322 (603)
T ss_pred             -CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc
Confidence             88999999999999999999998777666543221                                      145668


Q ss_pred             eEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccce-------eeeee---------------------------------
Q 022019          176 AFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE-------KYSTL---------------------------------  214 (304)
Q Consensus       176 v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~-------~~~~~---------------------------------  214 (304)
                      |+++..+|++++|++| .||.|.-||...+.....       .+..+                                 
T Consensus       323 ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~  402 (603)
T KOG0318|consen  323 ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVV  402 (603)
T ss_pred             eeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccccccee
Confidence            9999999999999976 999999999865321000       00000                                 


Q ss_pred             -----------------------------e------------------------------------------------cc
Q 022019          215 -----------------------------K------------------------------------------------GN  217 (304)
Q Consensus       215 -----------------------------~------------------------------------------------~~  217 (304)
                                                   .                                                ..
T Consensus       403 ~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~  482 (603)
T KOG0318|consen  403 KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK  482 (603)
T ss_pred             ecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee
Confidence                                         0                                                02


Q ss_pred             ccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeE-EeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       218 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      ...|.++|++++|+| ++.+|++|...+.+.+||..+.+... .+--|...|.+++|+|+..++|+|+ -|-+|.||+++
T Consensus       483 ~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGS-lDt~Viiysv~  560 (603)
T KOG0318|consen  483 LLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGS-LDTNVIIYSVK  560 (603)
T ss_pred             eecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecc-ccceEEEEEcc
Confidence            234566788888888 67788888888888888887766532 2334899999999999999999999 99999999998


Q ss_pred             ccee
Q 022019          297 KAVQ  300 (304)
Q Consensus       297 ~~~~  300 (304)
                      ....
T Consensus       561 kP~~  564 (603)
T KOG0318|consen  561 KPAK  564 (603)
T ss_pred             Chhh
Confidence            7543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.1e-29  Score=200.85  Aligned_cols=221  Identities=16%  Similarity=0.271  Sum_probs=182.1

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+.+|+-.++....      .+.-..-+|.+.+|-+.-+++++|+.|..|+||+..+.+....                 
T Consensus        36 ~V~IWnyetqtmVk------sfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~-----------------   92 (794)
T KOG0276|consen   36 DVQIWNYETQTMVK------SFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT-----------------   92 (794)
T ss_pred             eeEEEecccceeee------eeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEE-----------------
Confidence            45566666665544      5556677899999999999999999999999999987765433                 


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCC-eeeEEeecccccccccceEEEEECC-CCcEEEE-E
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFA-G  191 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~-~  191 (304)
                      ...|...+.+++.+|       ...+++++++|..|++||.+.+ .+.+++++|.+     -|++++|+| |.+.+++ +
T Consensus        93 FeAH~DyIR~iavHP-------t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H-----yVMqv~fnPkD~ntFaS~s  160 (794)
T KOG0276|consen   93 FEAHSDYIRSIAVHP-------TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH-----YVMQVAFNPKDPNTFASAS  160 (794)
T ss_pred             eeccccceeeeeecC-------CCCeEEecCCccEEEEeeccCceeeeeEEcCcce-----EEEEEEecCCCccceeeee
Confidence            334557888887755       5558999999999999999865 46677887776     999999999 4567774 5


Q ss_pred             cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecC-CCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEE
Q 022019          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT-HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH  270 (304)
Q Consensus       192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~  270 (304)
                      -|++|+||.+..+        .....+.+|...|.+++|-|- +..+|++|+.|..|+|||.++..++.++.||...|..
T Consensus       161 LDrTVKVWslgs~--------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~  232 (794)
T KOG0276|consen  161 LDRTVKVWSLGSP--------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSF  232 (794)
T ss_pred             ccccEEEEEcCCC--------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceE
Confidence            9999999999763        222233789999999999872 2359999999999999999999999999999999999


Q ss_pred             EEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          271 VQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       271 ~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      +.|+|.-+.+++|+ .||++++|+-.+-+
T Consensus       233 v~fhp~lpiiisgs-EDGTvriWhs~Ty~  260 (794)
T KOG0276|consen  233 VFFHPELPIIISGS-EDGTVRIWNSKTYK  260 (794)
T ss_pred             EEecCCCcEEEEec-CCccEEEecCccee
Confidence            99999999999999 99999999987754

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=7.8e-28  Score=174.40  Aligned_cols=235  Identities=18%  Similarity=0.335  Sum_probs=174.8

Q ss_pred             hcHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccc
Q 022019           21 VTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA  100 (304)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~  100 (304)
                      ..++++.++..+.|.     ......... +. ..-.+|+..|.+++|+|.|++|++|+.|.++.||.-..++.      
T Consensus        29 ilAscg~Dk~vriw~-----~~~~~s~~c-k~-vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef------   95 (312)
T KOG0645|consen   29 ILASCGTDKAVRIWS-----TSSGDSWTC-KT-VLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF------   95 (312)
T ss_pred             EEEeecCCceEEEEe-----cCCCCcEEE-EE-eccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce------
Confidence            445556666555553     332222211 11 12358999999999999999999999999999997653322      


Q ss_pred             ccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCC---eeeEEeecccccccccceE
Q 022019          101 CSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG---LLRCTYRAYDAVDEITAAF  177 (304)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~v~  177 (304)
                               .......+|...|.+++|       +++|++||++++|++|-||.+..+   ++...++.|..     .|.
T Consensus        96 ---------ecv~~lEGHEnEVK~Vaw-------s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-----DVK  154 (312)
T KOG0645|consen   96 ---------ECVATLEGHENEVKCVAW-------SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-----DVK  154 (312)
T ss_pred             ---------eEEeeeeccccceeEEEE-------cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-----ccc
Confidence                     223356678899999998       889999999999999999998754   34555665554     899


Q ss_pred             EEEECCCCcEEEE-EcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-
Q 022019          178 SVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-  255 (304)
Q Consensus       178 ~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-  255 (304)
                      .+.|+|...+|++ +.|++|++|+-.. ........+    +.+|...|.+++|+| .+..|++++.|++++||..... 
T Consensus       155 ~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW~c~~t----l~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~~  228 (312)
T KOG0645|consen  155 HVIWHPTEDLLFSCSYDNTIKVYRDED-DDDWECVQT----LDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTDL  228 (312)
T ss_pred             EEEEcCCcceeEEeccCCeEEEEeecC-CCCeeEEEE----ecCccceEEEEEecC-CCceEEEecCCcceEeeeeccCc
Confidence            9999999999995 5999999998764 333333333    377888999999999 7789999999999999973211 


Q ss_pred             ------e------------------EeEE------------------eccccCCeEEEEECCC-CcEEEEeeccCCeEEE
Q 022019          256 ------E------------------LLYV------------------LHGQEGGVTHVQFSRD-GNYLYTGGRKDPYILC  292 (304)
Q Consensus       256 ------~------------------~~~~------------------~~~~~~~v~~~~~~~~-~~~l~~~~~~d~~i~v  292 (304)
                            +                  .+..                  -..|...|+++.|+|. ...|++++ +||.|++
T Consensus       229 ~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~-DDG~v~~  307 (312)
T KOG0645|consen  229 SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGG-DDGIVNF  307 (312)
T ss_pred             chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecC-CCceEEE
Confidence                  0                  0000                  1246778999999995 67899999 9999999


Q ss_pred             Eecc
Q 022019          293 WDLR  296 (304)
Q Consensus       293 wd~~  296 (304)
                      |.+.
T Consensus       308 W~l~  311 (312)
T KOG0645|consen  308 WELE  311 (312)
T ss_pred             EEec
Confidence            9874

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=5.6e-29  Score=187.01  Aligned_cols=218  Identities=20%  Similarity=0.298  Sum_probs=180.6

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      +-+||+..++...      ++.||-..|..+++|+...||++++.|+.|+.||+..++.....                 
T Consensus       175 ikIwDlatg~Lkl------tltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-----------------  231 (460)
T KOG0285|consen  175 IKIWDLATGQLKL------TLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY-----------------  231 (460)
T ss_pred             eEEEEcccCeEEE------eecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh-----------------
Confidence            3456666665443      78999999999999999999999999999999999876554332                 


Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCC
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNK  194 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~  194 (304)
                      .+|-..|+++..+|       .-..|++|+.|.++++||+++...+..+.+|..     +|.++.+.|.+..+++ +.|+
T Consensus       232 hGHlS~V~~L~lhP-------Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-----~V~~V~~~~~dpqvit~S~D~  299 (460)
T KOG0285|consen  232 HGHLSGVYCLDLHP-------TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-----PVASVMCQPTDPQVITGSHDS  299 (460)
T ss_pred             ccccceeEEEeccc-------cceeEEecCCcceEEEeeecccceEEEecCCCC-----cceeEEeecCCCceEEecCCc
Confidence            33447889988754       556899999999999999999999999988776     9999999997767775 5999


Q ss_pred             eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEEC
Q 022019          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS  274 (304)
Q Consensus       195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  274 (304)
                      +|++||++.+.    ...    ....|...+.+++.+| ....+++++.| .|+-|++..+..+..+.+|..-|.+++.+
T Consensus       300 tvrlWDl~agk----t~~----tlt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~n  369 (460)
T KOG0285|consen  300 TVRLWDLRAGK----TMI----TLTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVN  369 (460)
T ss_pred             eEEEeeeccCc----eeE----eeecccceeeEEecCC-chhhhhccCCc-cceeccCCccchhhccccccceeeeeeec
Confidence            99999998742    112    2256778899999999 77788888876 59999999999999999999999999999


Q ss_pred             CCCcEEEEeeccCCeEEEEeccccee
Q 022019          275 RDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       275 ~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      .|| ++++|+ ++|.|.+||.++|-.
T Consensus       370 sD~-v~~~G~-dng~~~fwdwksg~n  393 (460)
T KOG0285|consen  370 SDG-VLVSGG-DNGSIMFWDWKSGHN  393 (460)
T ss_pred             cCc-eEEEcC-CceEEEEEecCcCcc
Confidence            877 677888 999999999998743

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=9.8e-29  Score=190.81  Aligned_cols=219  Identities=17%  Similarity=0.322  Sum_probs=171.4

Q ss_pred             ceeeeecCCCCceeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC
Q 022019           51 NQFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (304)
                      +.-..+.+|.+.=.+++|++. .-.|++++.|++|++||+.......          ...........|...|.+++|+|
T Consensus       168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~----------~~~~p~~~~~~h~~~VeDV~~h~  237 (422)
T KOG0264|consen  168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED----------KVVDPKTIFSGHEDVVEDVAWHP  237 (422)
T ss_pred             CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC----------ccccceEEeecCCcceehhhccc
Confidence            334478899998899999994 4489999999999999998554321          11223346677889999999988


Q ss_pred             ccceeCCCccEEEEEeCCCCEEEEEcCC--CeeeEEeecccccccccceEEEEECCCCcE-EEEE-cCCeEEEEEcCCCC
Q 022019          130 HMSASDPTSCVFASTTRDHPIHLWDATT--GLLRCTYRAYDAVDEITAAFSVAFNPTGTK-IFAG-YNKSVRVFDVHRPG  205 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~-~d~~i~v~d~~~~~  205 (304)
                      .      ...+|++++.|+.+.|||+++  .++......|     ...|.|++|+|-+.+ ||+| .|++|.+||+|...
T Consensus       238 ~------h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah-----~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~  306 (422)
T KOG0264|consen  238 L------HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH-----SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN  306 (422)
T ss_pred             c------chhhheeecCCCeEEEEEcCCCCCCCccccccc-----CCceeEEEeCCCCCceEEeccCCCcEEEeechhcc
Confidence            6      445899999999999999995  3333344444     349999999996554 5555 89999999999753


Q ss_pred             ccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc--------------eEeEEeccccCCeEEE
Q 022019          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--------------ELLYVLHGQEGGVTHV  271 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~~~~v~~~  271 (304)
                      .       ....+.+|...|..+.|+|....+|++++.|+.+.+||+..-              ++++.--||...|..+
T Consensus       307 ~-------~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df  379 (422)
T KOG0264|consen  307 K-------PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF  379 (422)
T ss_pred             c-------CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccc
Confidence            3       333448899999999999988899999999999999998632              2345566899999999


Q ss_pred             EECCCCcEEEEeeccCCeEEEEeccc
Q 022019          272 QFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       272 ~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      .|+|+..++++....|+.+.||++..
T Consensus       380 sWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  380 SWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cCCCCCCeEEEEecCCceEEEeeccc
Confidence            99999987554443999999999863

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.6e-27  Score=188.52  Aligned_cols=222  Identities=28%  Similarity=0.425  Sum_probs=176.4

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..|+......      ...+..|...+..+.|+|++++|++++.||.|++|++.++....                 .
T Consensus        32 ~i~i~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~-----------------~   88 (289)
T cd00200          32 TIKVWDLETGEL------LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR-----------------T   88 (289)
T ss_pred             EEEEEEeeCCCc------EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE-----------------E
Confidence            344555554432      23567899999999999999999999999999999998542211                 2


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  193 (304)
                      ...+...+.++.|       ++++.++++++.||.|++||+.+++....+..+..     .+.++.|+|++.+++++ .+
T Consensus        89 ~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~~  156 (289)
T cd00200          89 LTGHTSYVSSVAF-------SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD-----WVNSVAFSPDGTFVASSSQD  156 (289)
T ss_pred             EeccCCcEEEEEE-------cCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC-----cEEEEEEcCcCCEEEEEcCC
Confidence            2234457888888       55677888888899999999998887777764443     79999999999999887 59


Q ss_pred             CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEE
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF  273 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  273 (304)
                      +.|++||++... ..   ..    ...+...+.++.|+| ++..+++++.++.|++||++.++++..+..|...+.++.|
T Consensus       157 ~~i~i~d~~~~~-~~---~~----~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  227 (289)
T cd00200         157 GTIKLWDLRTGK-CV---AT----LTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF  227 (289)
T ss_pred             CcEEEEEccccc-cc---ee----EecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEE
Confidence            999999997531 11   11    135666899999999 6667888888999999999999999999889999999999


Q ss_pred             CCCCcEEEEeeccCCeEEEEecccceee
Q 022019          274 SRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       274 ~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +|++.++++++ .||.|++|++.+++.+
T Consensus       228 ~~~~~~~~~~~-~~~~i~i~~~~~~~~~  254 (289)
T cd00200         228 SPDGYLLASGS-EDGTIRVWDLRTGECV  254 (289)
T ss_pred             cCCCcEEEEEc-CCCcEEEEEcCCceeE
Confidence            99988888887 8999999999876543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.8e-29  Score=176.00  Aligned_cols=231  Identities=17%  Similarity=0.255  Sum_probs=185.3

Q ss_pred             CchhhcHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcc
Q 022019           17 SDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY   96 (304)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~   96 (304)
                      ...+++.+++.++..++|++     ...      ..+++..+|...|..++.+.|...|++|+.|+.+.+||+.+++...
T Consensus        27 ~dGnY~ltcGsdrtvrLWNp-----~rg------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R   95 (307)
T KOG0316|consen   27 VDGNYCLTCGSDRTVRLWNP-----LRG------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR   95 (307)
T ss_pred             cCCCEEEEcCCCceEEeecc-----ccc------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeee
Confidence            45677888888888888852     222      2345888999999999999999999999999999999999876543


Q ss_pred             ccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCC--eeeEEeeccccccccc
Q 022019           97 DVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEIT  174 (304)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~  174 (304)
                      .                 ...|...|..+.|       +.+...+++|+.|.++++||.++.  ++++.+.....     
T Consensus        96 r-----------------~rgH~aqVNtV~f-------NeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D-----  146 (307)
T KOG0316|consen   96 R-----------------FRGHLAQVNTVRF-------NEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD-----  146 (307)
T ss_pred             e-----------------cccccceeeEEEe-------cCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-----
Confidence            3                 3345688888888       667789999999999999999865  45555554443     


Q ss_pred             ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC
Q 022019          175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~  253 (304)
                      .|.++..+  +..|++| .||+++.||++.+.        +..  .-...+|++++|+| +++..++++.|+++++.|-.
T Consensus       147 ~V~Si~v~--~heIvaGS~DGtvRtydiR~G~--------l~s--Dy~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~  213 (307)
T KOG0316|consen  147 GVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT--------LSS--DYFGHPITSVSFSK-DGNCSLASSLDSTLRLLDKE  213 (307)
T ss_pred             ceeEEEec--ccEEEeeccCCcEEEEEeecce--------eeh--hhcCCcceeEEecC-CCCEEEEeeccceeeecccc
Confidence            78888876  4456655 99999999999742        111  23345799999999 77788899999999999999


Q ss_pred             CceEeEEeccccCC--eEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          254 NMELLYVLHGQEGG--VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       254 ~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +++.+..+++|...  =..++++.....+++|+ .||.+++||+.++..+
T Consensus       214 tGklL~sYkGhkn~eykldc~l~qsdthV~sgS-EDG~Vy~wdLvd~~~~  262 (307)
T KOG0316|consen  214 TGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGS-EDGKVYFWDLVDETQI  262 (307)
T ss_pred             hhHHHHHhcccccceeeeeeeecccceeEEecc-CCceEEEEEeccceee
Confidence            99999999999874  34567788888999999 9999999999887665

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=5.8e-28  Score=174.81  Aligned_cols=214  Identities=21%  Similarity=0.239  Sum_probs=176.6

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+.||..+++.|+++.+|.+|.+|+.|.+..||-..+++...                 ...+|...|+++..       
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG-----------------ty~GHtGavW~~Di-------   60 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG-----------------TYDGHTGAVWCCDI-------   60 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee-----------------eecCCCceEEEEEe-------
Confidence            567999999999999999999999999999999765554322                 45567789988865       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEc------CCeEEEEEcCCCCccc
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY------NKSVRVFDVHRPGRDF  208 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~------d~~i~v~d~~~~~~~~  208 (304)
                      +.+.+.+++|+.|.++++||+.+|+.+..++...      +|..+.|+++|++++.+.      .+.|.++|++......
T Consensus        61 d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~  134 (327)
T KOG0643|consen   61 DWDSKHLITGSADQTAKLWDVETGKQLATWKTNS------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI  134 (327)
T ss_pred             cCCcceeeeccccceeEEEEcCCCcEEEEeecCC------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh
Confidence            6688899999999999999999999999988766      899999999999988543      3679999998643221


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-eEeEEeccccCCeEEEEECCCCcEEEEeeccC
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD  287 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d  287 (304)
                      ....+ ......+...++.+-|.| -+..|++|.+||.|.+||++++ +.+.....|...|+.+.++||..++++++ .|
T Consensus       135 ~s~ep-~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-~D  211 (327)
T KOG0643|consen  135 DSEEP-YLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-KD  211 (327)
T ss_pred             cccCc-eEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc-cC
Confidence            11111 111134457799999999 7889999999999999999997 46666678999999999999999999999 99


Q ss_pred             CeEEEEecccceee
Q 022019          288 PYILCWDLRKAVQV  301 (304)
Q Consensus       288 ~~i~vwd~~~~~~~  301 (304)
                      .+-++||+++.+.+
T Consensus       212 ttakl~D~~tl~v~  225 (327)
T KOG0643|consen  212 TTAKLVDVRTLEVL  225 (327)
T ss_pred             ccceeeeccceeeE
Confidence            99999999987554

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.8e-28  Score=197.29  Aligned_cols=218  Identities=22%  Similarity=0.376  Sum_probs=171.5

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .++.|+........      ....+.+.|+++.|+++|.+|++|..+|.|.|||..+.+....                +
T Consensus       198 ~vylW~~~s~~v~~------l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~----------------~  255 (484)
T KOG0305|consen  198 SVYLWSASSGSVTE------LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT----------------L  255 (484)
T ss_pred             eEEEEecCCCceEE------eEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc----------------c
Confidence            35566655554332      2233488999999999999999999999999999886544322                2


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEE-eecccccccccceEEEEECCCCcEEEEE-c
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~  192 (304)
                      ...|...|-+++|         ++..+.+|+.|+.|..+|++..+.... +..|     ...|..+.|++|+.++|+| .
T Consensus       256 ~~~h~~rvg~laW---------~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H-----~qeVCgLkws~d~~~lASGgn  321 (484)
T KOG0305|consen  256 RGSHASRVGSLAW---------NSSVLSSGSRDGKILNHDVRISQHVVSTLQGH-----RQEVCGLKWSPDGNQLASGGN  321 (484)
T ss_pred             cCCcCceeEEEec---------cCceEEEecCCCcEEEEEEecchhhhhhhhcc-----cceeeeeEECCCCCeeccCCC
Confidence            2226688999999         466899999999999999998765544 4434     3499999999999999966 9


Q ss_pred             CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEe--cCCeEEEEecCCce--------------
Q 022019          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS--YSQTSAIYREDNME--------------  256 (304)
Q Consensus       193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~~~--------------  256 (304)
                      |+.+.|||....        ........|.+.|.+++|+|-...+||+|+  .|+.|++||..+++              
T Consensus       322 DN~~~Iwd~~~~--------~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL  393 (484)
T KOG0305|consen  322 DNVVFIWDGLSP--------EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSL  393 (484)
T ss_pred             ccceEeccCCCc--------cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeE
Confidence            999999999552        222223678899999999998788999865  58999999876552              


Q ss_pred             -----------------------------EeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          257 -----------------------------LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       257 -----------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                                                   ++..+.+|...|..++++|||..+++|+ .|.++++|++-.
T Consensus       394 ~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a-~DETlrfw~~f~  462 (484)
T KOG0305|consen  394 IWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGA-ADETLRFWNLFD  462 (484)
T ss_pred             EEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEec-ccCcEEeccccC
Confidence                                         2334568999999999999999999999 999999999865

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.5e-28  Score=199.41  Aligned_cols=213  Identities=16%  Similarity=0.235  Sum_probs=177.4

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccc----eEEEeecCCeEEEEeecCc
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE----ASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~  130 (304)
                      ...+|.+.|+.++.+||+..++|||.|.+|++||..-....         ++.....    ..-.+.-...|.++.+   
T Consensus       449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~---------~gt~~k~lsl~~~rtLel~ddvL~v~~---  516 (888)
T KOG0306|consen  449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV---------PGTQKKVLSLKHTRTLELEDDVLCVSV---  516 (888)
T ss_pred             hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc---------CcccceeeeeccceEEeccccEEEEEE---
Confidence            56789999999999999999999999999999997521100         0000000    0012223356666655   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                          ||||++|+++--|.++++|-+.+-+....+-+|.-     +|.||..+||++.+++| .|.+|++|-+.-      
T Consensus       517 ----Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL-----PV~smDIS~DSklivTgSADKnVKiWGLdF------  581 (888)
T KOG0306|consen  517 ----SPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL-----PVLSMDISPDSKLIVTGSADKNVKIWGLDF------  581 (888)
T ss_pred             ----cCCCcEEEEEeccCeEEEEEecceeeeeeeccccc-----ceeEEeccCCcCeEEeccCCCceEEecccc------
Confidence                89999999999999999999999887777776665     99999999999999966 999999999876      


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCe
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY  289 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~  289 (304)
                        ......+.+|...|.++.|.| ...++++++.|+.|+-||-...+.+..+.+|...|++++.+|+|.++++++ .|.+
T Consensus       582 --GDCHKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s-hD~s  657 (888)
T KOG0306|consen  582 --GDCHKSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS-HDKS  657 (888)
T ss_pred             --chhhhhhhcccCceeEEEEcc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc-CCce
Confidence              334444578999999999999 888999999999999999999999999999999999999999999999999 9999


Q ss_pred             EEEEecccc
Q 022019          290 ILCWDLRKA  298 (304)
Q Consensus       290 i~vwd~~~~  298 (304)
                      |++|.....
T Consensus       658 IRlwE~tde  666 (888)
T KOG0306|consen  658 IRLWERTDE  666 (888)
T ss_pred             eEeeeccCc
Confidence            999987654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1.9e-27  Score=211.87  Aligned_cols=220  Identities=13%  Similarity=0.176  Sum_probs=164.1

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      +..|++....      .+..+.+|.+.|++++|+| ++.+|++|+.||+|++||+.++....                  
T Consensus       557 v~lWd~~~~~------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~------------------  612 (793)
T PLN00181        557 VQVWDVARSQ------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG------------------  612 (793)
T ss_pred             EEEEECCCCe------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE------------------
Confidence            3456655433      2346789999999999997 78999999999999999997543211                  


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCe-eeEEeecccccccccceEEEEECCCCcEEE-EEc
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY  192 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~  192 (304)
                      .......+.++.|.      ++++.+|++|+.||.|++||+++.. ....+..|.     ..|.++.|. ++.+++ ++.
T Consensus       613 ~~~~~~~v~~v~~~------~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~-----~~V~~v~f~-~~~~lvs~s~  680 (793)
T PLN00181        613 TIKTKANICCVQFP------SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS-----KTVSYVRFV-DSSTLVSSST  680 (793)
T ss_pred             EEecCCCeEEEEEe------CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCC-----CCEEEEEEe-CCCEEEEEEC
Confidence            11223467777763      3478899999999999999998765 344454444     389999997 566676 459


Q ss_pred             CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEe-----------
Q 022019          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-----------  261 (304)
Q Consensus       193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------  261 (304)
                      |+.|++||++.......  ........+|...+..++|+| .+.+|++|+.|+.|++|+.....++..+           
T Consensus       681 D~~ikiWd~~~~~~~~~--~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~  757 (793)
T PLN00181        681 DNTLKLWDLSMSISGIN--ETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL  757 (793)
T ss_pred             CCEEEEEeCCCCccccC--CcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccc
Confidence            99999999975321100  111122367888899999999 6779999999999999998765444322           


Q ss_pred             --ccccCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          262 --HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       262 --~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                        ..|...|.+++|+|++.+|++|+ .||.|++|++
T Consensus       758 ~~~~~~~~V~~v~ws~~~~~lva~~-~dG~I~i~~~  792 (793)
T PLN00181        758 EVDDASQFISSVCWRGQSSTLVAAN-STGNIKILEM  792 (793)
T ss_pred             ccCCCCcEEEEEEEcCCCCeEEEec-CCCcEEEEec
Confidence              23445699999999999999999 9999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=1.6e-29  Score=189.47  Aligned_cols=197  Identities=18%  Similarity=0.323  Sum_probs=167.5

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      ..+.|.|+.+  |...+++|..|++|+|||..+.....                 ...+|.+.|.++.|         +.
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~-----------------~L~GHtGSVLCLqy---------d~  247 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK-----------------ILTGHTGSVLCLQY---------DE  247 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH-----------------hhhcCCCcEEeeec---------cc
Confidence            4567999998  45689999999999999987544322                 45667799999988         77


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCccceeeeeeecc
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGN  217 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~  217 (304)
                      +.+++|+.|.+|++||+.+++++.++-.|-.     .|..+.|+.  .+++ ++.|.++.+||+..+..     ..+...
T Consensus       248 rviisGSSDsTvrvWDv~tge~l~tlihHce-----aVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~-----it~rrV  315 (499)
T KOG0281|consen  248 RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE-----AVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD-----ITLRRV  315 (499)
T ss_pred             eEEEecCCCceEEEEeccCCchhhHHhhhcc-----eeEEEEEeC--CEEEEecCCceeEEEeccCchH-----HHHHHH
Confidence            7999999999999999999999988876654     899999973  4555 66999999999987531     344455


Q ss_pred             ccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       218 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      ..+|...|..+.|+.   +++++++.|.+|++|++.+++.+.++.+|..+|.|+.+  .|+++++|+ .|.+|++||+..
T Consensus       316 LvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGS-SDntIRlwdi~~  389 (499)
T KOG0281|consen  316 LVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS-SDNTIRLWDIEC  389 (499)
T ss_pred             Hhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecC-CCceEEEEeccc
Confidence            688999999999975   39999999999999999999999999999999999998  589999999 999999999999


Q ss_pred             ceee
Q 022019          298 AVQV  301 (304)
Q Consensus       298 ~~~~  301 (304)
                      |.++
T Consensus       390 G~cL  393 (499)
T KOG0281|consen  390 GACL  393 (499)
T ss_pred             cHHH
Confidence            9765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5.8e-28  Score=179.10  Aligned_cols=246  Identities=19%  Similarity=0.233  Sum_probs=161.9

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcc--------cc---cccccc
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY--------DV---NACSLA  104 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~--------~~---~~~~~~  104 (304)
                      ...|+.......++ -.+..+++|.+.|++++|+.||++|+|++.|++|+||++++.....        +.   ....+.
T Consensus        63 ~~~~k~~q~~f~Hp-l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fa  141 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHP-LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFA  141 (420)
T ss_pred             hhhhcccCCCcccc-hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEEC
Confidence            33444444333333 3445889999999999999999999999999999999998643210        00   000011


Q ss_pred             ccCCccceEEEeecCCeE---------------EEEeecC-----------ccceeCCCccEEEEEeCCCCEEEEEcCCC
Q 022019          105 KDQDSYEASLVVTEGESV---------------YDFCWFP-----------HMSASDPTSCVFASTTRDHPIHLWDATTG  158 (304)
Q Consensus       105 ~~~~~~~~~~~~~~~~~v---------------~~~~~~~-----------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  158 (304)
                      ++-...  .+....+..+               ..+.|..           ....+-.++.+|++++.|..|.+|+++ |
T Consensus       142 pDc~s~--vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G  218 (420)
T KOG2096|consen  142 PDCKSV--VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G  218 (420)
T ss_pred             CCcceE--EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C
Confidence            110000  0111111111               1111100           001223467899999999999999998 8


Q ss_pred             eeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCC-ccceeeeeeeccccccccceeEEEeecCCCc
Q 022019          159 LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPG-RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG  236 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  236 (304)
                      +.+..+.....     .-+..+.+|+|++++ +|.---|++|.+--.. ..++.. .-...+.+|...|..++|+| +..
T Consensus       219 q~L~~idtnq~-----~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev-~rvf~LkGH~saV~~~aFsn-~S~  291 (420)
T KOG2096|consen  219 QLLQSIDTNQS-----SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEV-KRVFSLKGHQSAVLAAAFSN-SST  291 (420)
T ss_pred             ceeeeeccccc-----cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhh-hhhheeccchhheeeeeeCC-Ccc
Confidence            87777665443     445788999999999 4588889999874321 111111 11223488999999999999 788


Q ss_pred             EEEEEecCCeEEEEecCCc----------------------eEe-------------------EEe------------cc
Q 022019          237 MLAIGSYSQTSAIYREDNM----------------------ELL-------------------YVL------------HG  263 (304)
Q Consensus       237 ~l~~~~~dg~i~i~d~~~~----------------------~~~-------------------~~~------------~~  263 (304)
                      .+++.+.||+++|||++-.                      .++                   ..+            ..
T Consensus       292 r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~  371 (420)
T KOG2096|consen  292 RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI  371 (420)
T ss_pred             eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh
Confidence            9999999999999997411                      010                   001            13


Q ss_pred             ccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       264 ~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      |...|.+++|+++|++++++|  |..++++.
T Consensus       372 h~~~Is~is~~~~g~~~atcG--dr~vrv~~  400 (420)
T KOG2096|consen  372 HSTTISSISYSSDGKYIATCG--DRYVRVIR  400 (420)
T ss_pred             hcCceeeEEecCCCcEEeeec--ceeeeeec
Confidence            677899999999999999998  88888876

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=3.3e-28  Score=190.90  Aligned_cols=227  Identities=17%  Similarity=0.248  Sum_probs=170.1

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      -..+.+|...|.++++.|.|..|++|+.|.+|++||+........            ....+.-.....+.++.|     
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~------------~fr~l~P~E~h~i~sl~y-----  222 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR------------SFRQLQPCETHQINSLQY-----  222 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccch------------hhhccCcccccccceeee-----
Confidence            346789999999999999999999999999999999975432111            111123334577888888     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecc-------cccccccceEEEEECCCCc--EEEEEcCCeEEEEEcCC
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-------DAVDEITAAFSVAFNPTGT--KIFAGYNKSVRVFDVHR  203 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~~~~~v~~i~~~~~~~--~l~~~~d~~i~v~d~~~  203 (304)
                        ++.|..|++.+.....+|+|-...+.....++.       ...+|...+++.+|+|..+  +|.++.||++++||+..
T Consensus       223 --s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~  300 (641)
T KOG0772|consen  223 --SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN  300 (641)
T ss_pred             --cCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence              668888888888889999996544433333321       2235777899999999754  34467999999999987


Q ss_pred             CCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce--EeEE-eccccC--CeEEEEECCCCc
Q 022019          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYV-LHGQEG--GVTHVQFSRDGN  278 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~-~~~~~~--~v~~~~~~~~~~  278 (304)
                      .....+.+....  ..+..-++++++|+| ++.+||+|+.||.|.+|+..+..  +... -.+|..  .|+++.||+||+
T Consensus       301 ~k~q~qVik~k~--~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~  377 (641)
T KOG0772|consen  301 TKSQLQVIKTKP--AGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN  377 (641)
T ss_pred             chhheeEEeecc--CCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence            554433332222  134556789999999 77789999999999999986543  2222 246766  899999999999


Q ss_pred             EEEEeeccCCeEEEEecccceeee
Q 022019          279 YLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       279 ~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      +|++=| .|+++++||++..++.+
T Consensus       378 ~LlSRg-~D~tLKvWDLrq~kkpL  400 (641)
T KOG0772|consen  378 YLLSRG-FDDTLKVWDLRQFKKPL  400 (641)
T ss_pred             hhhhcc-CCCceeeeeccccccch
Confidence            999999 99999999999876654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=5.3e-28  Score=177.52  Aligned_cols=223  Identities=19%  Similarity=0.305  Sum_probs=174.1

Q ss_pred             eecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccc-cccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYD-VNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ..+.|.+.|+++...+ .|+|+++|+.||.|.+||+++...-.. ...+.   ..-.........|...|.++.|.|.  
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k---~~c~v~~~h~~~Hky~iss~~WyP~--  112 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK---HKCIVAKQHENGHKYAISSAIWYPI--  112 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeh---eeeeccccCCccceeeeeeeEEeee--
Confidence            4568999999999998 899999999999999999975431000 00000   0000011123346678999999887  


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC---CcEEEEE-cCCeEEEEEcCCCCccc
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT---GTKIFAG-YNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~-~d~~i~v~d~~~~~~~~  208 (304)
                          |...|.+++.|.++++||..+.+....+....      .|++-+++|-   ..++|+| .+-.|++.|+..+    
T Consensus       113 ----DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----  178 (397)
T KOG4283|consen  113 ----DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----  178 (397)
T ss_pred             ----cCceeecccccceEEEeecccceeeEEeecCc------eeehhhcChhhhcceEEEEecCCCcEEEEeccCC----
Confidence                66689999999999999999988887777665      7889999984   3466677 8889999999873    


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-eEeEEe--------------ccccCCeEEEEE
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVL--------------HGQEGGVTHVQF  273 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~--------------~~~~~~v~~~~~  273 (304)
                          .+...+.+|...|.++.|+|.....|++|+.||.|++||++.. .+...+              ..|.+.|.+++|
T Consensus       179 ----s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~  254 (397)
T KOG4283|consen  179 ----SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAW  254 (397)
T ss_pred             ----cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeee
Confidence                3444558999999999999988889999999999999999754 233332              256778999999


Q ss_pred             CCCCcEEEEeeccCCeEEEEecccceee
Q 022019          274 SRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       274 ~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +.+|.++++.+ .|..+++|+..+|+.-
T Consensus       255 tSd~~~l~~~g-td~r~r~wn~~~G~nt  281 (397)
T KOG4283|consen  255 TSDARYLASCG-TDDRIRVWNMESGRNT  281 (397)
T ss_pred             cccchhhhhcc-CccceEEeecccCccc
Confidence            99999999999 9999999999988654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1e-27  Score=203.24  Aligned_cols=236  Identities=18%  Similarity=0.314  Sum_probs=182.8

Q ss_pred             cceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccc-cccccCCccceEEEeecCCeEEEEeec
Q 022019           50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC-SLAKDQDSYEASLVVTEGESVYDFCWF  128 (304)
Q Consensus        50 ~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~  128 (304)
                      .+.+-....|.+.|+|+.|+|||++||+|++|+.|.||..........+... ................|...|.+++| 
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W-  137 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW-  137 (942)
T ss_pred             chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc-
Confidence            3455578899999999999999999999999999999998751111111110 11112233445567779999999999 


Q ss_pred             CccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCc-
Q 022019          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGR-  206 (304)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~-  206 (304)
                            +|++.+|++++.|++|.+|+..+.+....+..|..     .|..+.|+|-|++||+ +.|++|+||++..-+- 
T Consensus       138 ------sp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s-----~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~  206 (942)
T KOG0973|consen  138 ------SPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS-----LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE  206 (942)
T ss_pred             ------CCCccEEEEecccceEEEEccccceeeeeeecccc-----cccceEECCccCeeeeecCCceEEEEEcccceee
Confidence                  77999999999999999999999988888887776     8999999999999996 5999999999644110 


Q ss_pred             -----cc----------------------------------e----eeeeeeccccccccceeEEEeecC----C-----
Q 022019          207 -----DF----------------------------------E----KYSTLKGNKEGQAGIMSAIAFSPT----H-----  234 (304)
Q Consensus       207 -----~~----------------------------------~----~~~~~~~~~~~~~~~v~~~~~~p~----~-----  234 (304)
                           ++                                  .    ........+.+|.+++.++.|+|.    .     
T Consensus       207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~  286 (942)
T KOG0973|consen  207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT  286 (942)
T ss_pred             EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC
Confidence                 00                                  0    000111245679999999999983    1     


Q ss_pred             ---C----cEEEEEecCCeEEEEecCCceEeEEec-cccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          235 ---T----GMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       235 ---~----~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                         .    ..+|+|+.|++|.||.....+|+..+. -....|..++|+|||..|++++ .||+|.+..++..
T Consensus       287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS-~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  287 STQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS-LDGTVALIHFEEK  357 (942)
T ss_pred             ccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe-cCCeEEEEEcchH
Confidence               1    178899999999999998888876654 2356899999999999999999 9999999998764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.2e-27  Score=175.58  Aligned_cols=216  Identities=17%  Similarity=0.282  Sum_probs=168.6

Q ss_pred             ceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      .++..+..|.++|++++.+  +.++|+|+.|-+|+|||+.....                 ......|...++++.|.+.
T Consensus        34 ~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q-----------------lg~ll~HagsitaL~F~~~   94 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ-----------------LGILLSHAGSITALKFYPP   94 (362)
T ss_pred             eccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhh-----------------hcceeccccceEEEEecCC
Confidence            4455778999999999995  89999999999999999985432                 2355667789999998653


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCccce
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~  209 (304)
                      .     ....|++|+.||.|.+|+...-..+.+++.|..     .|+.++.+|.+++.+ +|.|+.+++|++-.+...+.
T Consensus        95 ~-----S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-----~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v  164 (362)
T KOG0294|consen   95 L-----SKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-----QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV  164 (362)
T ss_pred             c-----chhheeeecCCCcEEEEEcCCeEEeeeeccccc-----ccceeEecCCCceEEEEcCCceeeeehhhcCcccee
Confidence            2     122799999999999999998888888888776     899999999999888 78999999999976432211


Q ss_pred             ee----eee---ec----------------------ccc--ccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEe
Q 022019          210 KY----STL---KG----------------------NKE--GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL  258 (304)
Q Consensus       210 ~~----~~~---~~----------------------~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~  258 (304)
                      ..    ...   ..                      .+.  .....+.++.|.  ++..|++|.+|+.|.+||..+..+.
T Consensus       165 ~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~  242 (362)
T KOG0294|consen  165 LNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL--DGSELLVGGDNEWISLKDTDSDTPL  242 (362)
T ss_pred             eccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec--CCceEEEecCCceEEEeccCCCccc
Confidence            00    000   00                      000  001123444444  5668899999999999999999999


Q ss_pred             EEeccccCCeEEEEE--CCCCcEEEEeeccCCeEEEEecccc
Q 022019          259 YVLHGQEGGVTHVQF--SRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       259 ~~~~~~~~~v~~~~~--~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      ..+.+|...|.++.+  .|++.+|++++ .||.|+|||++..
T Consensus       243 ~~~~AH~~RVK~i~~~~~~~~~~lvTaS-SDG~I~vWd~~~~  283 (362)
T KOG0294|consen  243 TEFLAHENRVKDIASYTNPEHEYLVTAS-SDGFIKVWDIDME  283 (362)
T ss_pred             eeeecchhheeeeEEEecCCceEEEEec-cCceEEEEEcccc
Confidence            999999999999985  67889999999 9999999999876

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=8.9e-27  Score=183.28  Aligned_cols=210  Identities=18%  Similarity=0.222  Sum_probs=169.1

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+..|...++-.+|+|.|.|+|+|...|+|||||....+...+               .....-..+|.++.|       
T Consensus        54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLK---------------nef~v~aG~I~Di~W-------  111 (603)
T KOG0318|consen   54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILK---------------NEFQVLAGPIKDISW-------  111 (603)
T ss_pred             eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeee---------------eeeeeccccccccee-------
Confidence            6788999999999999999999999999999999875322111               011112368888888       


Q ss_pred             CCCccEEEEEeCC--CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcE-EEEE-cCCeEEEEEcCCCCcccee
Q 022019          135 DPTSCVFASTTRD--HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK-IFAG-YNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       135 ~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~-~d~~i~v~d~~~~~~~~~~  210 (304)
                      +++++.|++.++.  +..+++-.++|..+..+..|..     .|.+++|-|...+ ++++ .|++|.+|+-.    +   
T Consensus       112 d~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr-----~ins~~~KpsRPfRi~T~sdDn~v~ffeGP----P---  179 (603)
T KOG0318|consen  112 DFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSR-----RINSVDFKPSRPFRIATGSDDNTVAFFEGP----P---  179 (603)
T ss_pred             CCCCcEEEEEecCccceeEEEEecCCCccceeeccce-----eEeeeeccCCCceEEEeccCCCeEEEeeCC----C---
Confidence            7788888777653  2334444456777778887775     8999999998755 4454 99999999842    2   


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec---cccCCeEEEEECCCCcEEEEeeccC
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH---GQEGGVTHVQFSRDGNYLYTGGRKD  287 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~d  287 (304)
                       ..+......|..-|.++.|+| ++.++++++.||+|.+||-.+++.+..+.   +|++.|.+++|+||+..+++++ .|
T Consensus       180 -FKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S-aD  256 (603)
T KOG0318|consen  180 -FKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS-AD  256 (603)
T ss_pred             -eeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec-CC
Confidence             344455577888999999999 68899999999999999999999999998   8999999999999999999999 99


Q ss_pred             CeEEEEecccceee
Q 022019          288 PYILCWDLRKAVQV  301 (304)
Q Consensus       288 ~~i~vwd~~~~~~~  301 (304)
                      .+++|||+.+.+.+
T Consensus       257 kt~KIWdVs~~slv  270 (603)
T KOG0318|consen  257 KTIKIWDVSTNSLV  270 (603)
T ss_pred             ceEEEEEeeccceE
Confidence            99999999988554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=5e-27  Score=180.57  Aligned_cols=205  Identities=20%  Similarity=0.283  Sum_probs=170.4

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      +.+++||...|+.+.|+|+...+++++.|..|+||......                 .......|..+|+.+.-     
T Consensus       254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-----------------~~~~~~~h~~~V~~ls~-----  311 (506)
T KOG0289|consen  254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-----------------EPTSSRPHEEPVTGLSL-----  311 (506)
T ss_pred             hhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-----------------Cccccccccccceeeee-----
Confidence            44789999999999999999999999999999999876432                 22244556678888766     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                        +|.|.+|++++.||+..+.|++++..........   ....+++.+|+|||..+.+| .|+.++|||+...       
T Consensus       312 --h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~---s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~-------  379 (506)
T KOG0289|consen  312 --HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDET---SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ-------  379 (506)
T ss_pred             --ccCCcEEEEecCCceEEEEEccCCcEEEEEeecc---ccceeEEeeEcCCceEEeccCCCceEEEEEcCCc-------
Confidence              6789999999999999999999998776655421   11268999999999999988 9999999999873       


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccc-cCCeEEEEECCCCcEEEEeeccCCeE
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-EGGVTHVQFSRDGNYLYTGGRKDPYI  290 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~d~~i  290 (304)
                       .....+.+|.++|..++|+. +|.+|+++++|+.|++||++..+...++.-. ..++.++.|.+.|.+|+.+| .|=.|
T Consensus       380 -~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g-~~l~V  456 (506)
T KOG0289|consen  380 -TNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG-SDLQV  456 (506)
T ss_pred             -cccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec-ceeEE
Confidence             33444588999999999999 9999999999999999999988877777632 23799999999999999998 77666


Q ss_pred             EEEe
Q 022019          291 LCWD  294 (304)
Q Consensus       291 ~vwd  294 (304)
                      ++++
T Consensus       457 y~~~  460 (506)
T KOG0289|consen  457 YICK  460 (506)
T ss_pred             EEEe
Confidence            6666

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=2.1e-28  Score=182.09  Aligned_cols=212  Identities=16%  Similarity=0.322  Sum_probs=169.3

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      +.++.+-|..|+|||+||++|+.||.|.+||..+++......-         ....-..-+..+|.+++|       +.|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkY---------QAqd~fMMmd~aVlci~F-------SRD  274 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKY---------QAQDNFMMMDDAVLCISF-------SRD  274 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhh---------hhhcceeecccceEEEee-------ccc
Confidence            4567799999999999999999999999999988876433211         011123345578888877       889


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEee-cccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCccceeeeeee
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYR-AYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      ...+++|+.||.|++|.+.+|.++..+. .|.     ..|+++.|+.|+..+.+ +.|.++++--+..+        ...
T Consensus       275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHt-----kGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG--------K~L  341 (508)
T KOG0275|consen  275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHT-----KGVTCLSFSRDNSQILSASFDQTVRIHGLKSG--------KCL  341 (508)
T ss_pred             HHHhhccCcCCcEEEEEEecchHHHHhhhhhc-----cCeeEEEEccCcchhhcccccceEEEeccccc--------hhH
Confidence            9999999999999999999999988775 333     38999999999998884 59999999998763        233


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc--------------------------------
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--------------------------------  263 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------------------  263 (304)
                      ..+.+|.+.|+...|.+ ++..+++++.||+|++|+.++.+++.+++.                                
T Consensus       342 KEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im  420 (508)
T KOG0275|consen  342 KEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM  420 (508)
T ss_pred             HHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence            34488999999999999 788999999999999999876654433321                                


Q ss_pred             ---------------ccCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          264 ---------------QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       264 ---------------~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                                     ..+...+++.+|.|.++++.+ .|+.++.|.+.+|+.
T Consensus       421 n~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig-ED~vlYCF~~~sG~L  471 (508)
T KOG0275|consen  421 NMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG-EDGVLYCFSVLSGKL  471 (508)
T ss_pred             eccceEEeeeccCCccCCceEEEEecCCCcEEEEEc-cCcEEEEEEeecCce
Confidence                           123456677899999999999 999999999888753

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=1.7e-26  Score=191.84  Aligned_cols=216  Identities=12%  Similarity=0.159  Sum_probs=161.7

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC-C
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP-T  137 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~  137 (304)
                      |-..|.....++++..+++++.+.....|+...+.........    +..........+|...|.+++|       +| +
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~----G~~~~~~~~l~GH~~~V~~v~f-------sP~d   87 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDY----GKLASNPPILLGQEGPIIDVAF-------NPFD   87 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeecccc----ccCCCCCceEeCCCCCEEEEEE-------cCCC
Confidence            4445666777788888888998888899987654322111110    1111112345678899999999       55 6


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCe-------eeEEeecccccccccceEEEEECCCC-cEEEE-EcCCeEEEEEcCCCCccc
Q 022019          138 SCVFASTTRDHPIHLWDATTGL-------LRCTYRAYDAVDEITAAFSVAFNPTG-TKIFA-GYNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~-~~d~~i~v~d~~~~~~~~  208 (304)
                      +++|++|+.|++|++||+.++.       .+..+..|.     ..|.+++|+|++ .+|++ +.|+.|+|||++...   
T Consensus        88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-----~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~---  159 (493)
T PTZ00421         88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT-----KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK---  159 (493)
T ss_pred             CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC-----CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe---
Confidence            7899999999999999997652       234444443     489999999986 57775 499999999998631   


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCC-eEEEEECCCCcEEEEee---
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG-VTHVQFSRDGNYLYTGG---  284 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~---  284 (304)
                           ......+|...|.+++|+| ++.+|++++.|+.|+|||+++++.+.++.+|.+. +..+.|.+++..|++++   
T Consensus       160 -----~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~  233 (493)
T PTZ00421        160 -----AVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSK  233 (493)
T ss_pred             -----EEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCC
Confidence                 1122256788899999999 7789999999999999999999999999988765 45788999988888765   


Q ss_pred             ccCCeEEEEecccce
Q 022019          285 RKDPYILCWDLRKAV  299 (304)
Q Consensus       285 ~~d~~i~vwd~~~~~  299 (304)
                      ..|+.|++||+++..
T Consensus       234 s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        234 SQQRQIMLWDTRKMA  248 (493)
T ss_pred             CCCCeEEEEeCCCCC
Confidence            147899999998754

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=3.2e-27  Score=182.52  Aligned_cols=217  Identities=19%  Similarity=0.340  Sum_probs=165.6

Q ss_pred             ecCCCCceeEEEEcCCC-CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           56 SSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .-.|.+.|+.+++.|.. ..+|+.+..+.|.|||..+..-......       .-.....+.+|...-+.++|++.    
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-------~~~Pdl~L~gH~~eg~glsWn~~----  188 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-------ECRPDLRLKGHEKEGYGLSWNRQ----  188 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-------cCCCceEEEeecccccccccccc----
Confidence            35699999999999954 5677788899999999875432221110       11122244556566788899654    


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCee-------eEEeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCCC
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLL-------RCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPG  205 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~--~~~d~~i~v~d~~~~~  205 (304)
                        ....+++++.|++|++||+.....       ...+..     |...|..++|++-...++  +|.|+.+.|||+|...
T Consensus       189 --~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~-----h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~  261 (422)
T KOG0264|consen  189 --QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG-----HEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT  261 (422)
T ss_pred             --cceeEeeccCCCcEEEEeccccccCCccccceEEeec-----CCcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence              344799999999999999975432       223333     444899999999765555  5699999999999621


Q ss_pred             ccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-eEeEEeccccCCeEEEEECCCCc-EEEEe
Q 022019          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGN-YLYTG  283 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~  283 (304)
                            ........+|.+.+.|++|+|.++.+||+|+.|++|++||+|+. +++.++.+|+..|..+.|+|... .|+++
T Consensus       262 ------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS  335 (422)
T KOG0264|consen  262 ------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS  335 (422)
T ss_pred             ------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec
Confidence                  23333447899999999999999999999999999999999985 48899999999999999999765 56666


Q ss_pred             eccCCeEEEEeccc
Q 022019          284 GRKDPYILCWDLRK  297 (304)
Q Consensus       284 ~~~d~~i~vwd~~~  297 (304)
                      | .|+.+.|||+..
T Consensus       336 g-~D~rl~vWDls~  348 (422)
T KOG0264|consen  336 G-TDRRLNVWDLSR  348 (422)
T ss_pred             c-cCCcEEEEeccc
Confidence            6 999999999965

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=8.2e-26  Score=160.30  Aligned_cols=225  Identities=18%  Similarity=0.256  Sum_probs=163.8

Q ss_pred             eeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccc------------ccccccccCCccceE--------
Q 022019           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV------------NACSLAKDQDSYEAS--------  113 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~------------~~~~~~~~~~~~~~~--------  113 (304)
                      +.-+.|++.|.|.+|+|+|.++++|+.|++|++..+.........            ....+..+.......        
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd  162 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD  162 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence            355789999999999999999999999999999876543321111            111111111111000        


Q ss_pred             ---------------EEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeec--ccccccccce
Q 022019          114 ---------------LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA--YDAVDEITAA  176 (304)
Q Consensus       114 ---------------~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~v  176 (304)
                                     ...+|...|..+        ++-++-.+++|+.|.+|++||++-..++.++..  +...-..+.|
T Consensus       163 c~iy~tdc~~g~~~~a~sghtghilal--------yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessav  234 (350)
T KOG0641|consen  163 CKIYITDCGRGQGFHALSGHTGHILAL--------YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAV  234 (350)
T ss_pred             ceEEEeecCCCCcceeecCCcccEEEE--------EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccccee
Confidence                           011111111111        123677899999999999999998877776643  2222344689


Q ss_pred             EEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc
Q 022019          177 FSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (304)
Q Consensus       177 ~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~  255 (304)
                      .+++.+|.|++|++| .|....+||++.+        .+...+..|...|.++.|+| +..++++|+.|..|++-|+...
T Consensus       235 aav~vdpsgrll~sg~~dssc~lydirg~--------r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  235 AAVAVDPSGRLLASGHADSSCMLYDIRGG--------RMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             EEEEECCCcceeeeccCCCceEEEEeeCC--------ceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccc
Confidence            999999999999998 9999999999873        22233367888999999999 9999999999999999998642


Q ss_pred             ----eEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          256 ----ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       256 ----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                          -++...-.|+..+..+.|+|..--+++.+ .|.++.+|-+.
T Consensus       306 la~el~~~vv~ehkdk~i~~rwh~~d~sfisss-adkt~tlwa~~  349 (350)
T KOG0641|consen  306 LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSS-ADKTATLWALN  349 (350)
T ss_pred             hhhcCceEEEEeccCceEEEEecCccceeeecc-CcceEEEeccC
Confidence                24455567999999999999988888888 99999999764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=1e-27  Score=188.20  Aligned_cols=217  Identities=19%  Similarity=0.293  Sum_probs=164.5

Q ss_pred             eeeeecCCCCceeEEEEcCCC-CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           52 QFRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        52 ~~~~~~~h~~~V~~i~~s~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      .+..-+||...++|.+|+|+. ..|+|++.||++||||+.+.+....+....           ......-+++.++|   
T Consensus       260 Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k-----------~~~g~Rv~~tsC~~---  325 (641)
T KOG0772|consen  260 DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK-----------PAGGKRVPVTSCAW---  325 (641)
T ss_pred             hhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec-----------cCCCcccCceeeec---
Confidence            344568999999999999954 579999999999999998654321111111           00112235566666   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCccce
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~  209 (304)
                          ++++.+||+|+.||+|.+|+.........+.....+.....|+||.|+++|++|++ |.|+++++||++....++.
T Consensus       326 ----nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~  401 (641)
T KOG0772|consen  326 ----NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN  401 (641)
T ss_pred             ----CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchh
Confidence                88999999999999999999865444444444443344448999999999999995 7999999999998655544


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEec------CCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEe
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG  283 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  283 (304)
                      ....+..     ..+-+.++|+| +..+|++|+.      .|.+.+||..+...+..+.-....|..+.|+|.=+.|++|
T Consensus       402 ~~tgL~t-----~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g  475 (641)
T KOG0772|consen  402 VRTGLPT-----PFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG  475 (641)
T ss_pred             hhcCCCc-----cCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence            3333322     23457899999 7779999875      4679999999999999998778889999999998889999


Q ss_pred             eccCCeEEEE
Q 022019          284 GRKDPYILCW  293 (304)
Q Consensus       284 ~~~d~~i~vw  293 (304)
                      + .||.+++|
T Consensus       476 s-gdG~~~vy  484 (641)
T KOG0772|consen  476 S-GDGTAHVY  484 (641)
T ss_pred             c-CCCceEEE
Confidence            8 89999887

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4e-26  Score=177.98  Aligned_cols=204  Identities=17%  Similarity=0.216  Sum_probs=168.2

Q ss_pred             eeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           53 FRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      ++.+.+|..+|..+.|+| ++..|++|++|+.+++||+.+..                 +......|...|.+.+|.|. 
T Consensus       103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-----------------v~~~l~~htDYVR~g~~~~~-  164 (487)
T KOG0310|consen  103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-----------------VQAELSGHTDYVRCGDISPA-  164 (487)
T ss_pred             HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-----------------EEEEecCCcceeEeeccccC-
Confidence            347889999999999999 56688899999999999998542                 22245567789999988654 


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCe-eeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCcccee
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~  210 (304)
                           ++.++++|+.||.|++||++... .+..+.      |..+|.++.+-|.|..|+++....|++||+-+++.    
T Consensus       165 -----~~hivvtGsYDg~vrl~DtR~~~~~v~eln------hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~q----  229 (487)
T KOG0310|consen  165 -----NDHIVVTGSYDGKVRLWDTRSLTSRVVELN------HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQ----  229 (487)
T ss_pred             -----CCeEEEecCCCceEEEEEeccCCceeEEec------CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCce----
Confidence                 55689999999999999999763 333332      33399999999999999988899999999987532    


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeE
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI  290 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i  290 (304)
                         .......|...|+|+++.. ++..|++|+-|+.|++||+.+.+.+..+. ..++|.+++.+|++..++.|. .||.+
T Consensus       230 ---ll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGm-snGlv  303 (487)
T KOG0310|consen  230 ---LLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGM-SNGLV  303 (487)
T ss_pred             ---ehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEec-cccee
Confidence               2222245888899999999 67899999999999999999999999997 578999999999999999999 89988


Q ss_pred             EEEec
Q 022019          291 LCWDL  295 (304)
Q Consensus       291 ~vwd~  295 (304)
                      .+=+.
T Consensus       304 ~~rr~  308 (487)
T KOG0310|consen  304 SIRRR  308 (487)
T ss_pred             eeehh
Confidence            76643

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=2.7e-27  Score=180.91  Aligned_cols=214  Identities=19%  Similarity=0.247  Sum_probs=166.5

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      ...|++...+...      ++.||.+.|+++.|......+++|+.|.+|++||+...........               
T Consensus       243 ~r~Wnvd~~r~~~------TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~---------------  301 (459)
T KOG0288|consen  243 LRLWNVDSLRLRH------TLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP---------------  301 (459)
T ss_pred             eeeeeccchhhhh------hhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc---------------
Confidence            3455556555554      7889999999999998776799999999999999986443222211               


Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCC
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNK  194 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~  194 (304)
                         ...+.+++-         ....+++|..|++|++||.++..+....+.++      .|+++..++++..+.+ +.|.
T Consensus       302 ---~S~cnDI~~---------~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg------~vtSl~ls~~g~~lLsssRDd  363 (459)
T KOG0288|consen  302 ---GSQCNDIVC---------SISDVISGHFDKKVRFWDIRSADKTRSVPLGG------RVTSLDLSMDGLELLSSSRDD  363 (459)
T ss_pred             ---cccccceEe---------cceeeeecccccceEEEeccCCceeeEeecCc------ceeeEeeccCCeEEeeecCCC
Confidence               123333332         23468899999999999999999988888766      8999999999998885 5999


Q ss_pred             eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC--CeEEEE
Q 022019          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG--GVTHVQ  272 (304)
Q Consensus       195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~  272 (304)
                      ++.+.|+++.+    ...++...........+.+.||| ++.++++|+.||.|+||+..++++...+.....  .|++++
T Consensus       364 tl~viDlRt~e----I~~~~sA~g~k~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~  438 (459)
T KOG0288|consen  364 TLKVIDLRTKE----IRQTFSAEGFKCASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLS  438 (459)
T ss_pred             ceeeeeccccc----EEEEeeccccccccccceeEECC-CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEE
Confidence            99999998742    11222211112223388999999 888999999999999999999999888875444  599999


Q ss_pred             ECCCCcEEEEeeccCCeEEEEe
Q 022019          273 FSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       273 ~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      |+|.|..|++++ .++.+.+|.
T Consensus       439 W~~sG~~Llsad-k~~~v~lW~  459 (459)
T KOG0288|consen  439 WNPSGSGLLSAD-KQKAVTLWT  459 (459)
T ss_pred             EcCCCchhhccc-CCcceEecC
Confidence            999999999999 999999993

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=1.7e-26  Score=174.87  Aligned_cols=212  Identities=20%  Similarity=0.338  Sum_probs=162.4

Q ss_pred             eeecCCCCceeEEEEcCCC---CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           54 RTSSIPNNFLKGIKWSPDG---SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~---~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      ..+.||.++|.+++|.-..   ..|++++.|.++++|.++.+........             ...+|...|.++..   
T Consensus       138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~-------------~~~GHk~~V~sVsv---  201 (423)
T KOG0313|consen  138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK-------------VCRGHKRSVDSVSV---  201 (423)
T ss_pred             EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh-------------HhcccccceeEEEe---
Confidence            3788999999998886433   3699999999999999886654322211             11267788888765   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCC-------------------------eeeEEeecccccccccceEEEEECCCC
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTG-------------------------LLRCTYRAYDAVDEITAAFSVAFNPTG  185 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------------------~~~~~~~~~~~~~~~~~v~~i~~~~~~  185 (304)
                          .++|..+++|+.|..|.+|+..+.                         .++.++.     +|..+|.++.|++. 
T Consensus       202 ----~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~-----GHt~~Vs~V~w~d~-  271 (423)
T KOG0313|consen  202 ----DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE-----GHTEPVSSVVWSDA-  271 (423)
T ss_pred             ----cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec-----ccccceeeEEEcCC-
Confidence                779999999999999999993211                         1122222     35559999999984 


Q ss_pred             cEEE-EEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce---EeEEe
Q 022019          186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVL  261 (304)
Q Consensus       186 ~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~  261 (304)
                      ..++ ++-|.+|+.||+.+++.....         .....+.++..+| ...+|++|+.|..|++||.+++.   +.++|
T Consensus       272 ~v~yS~SwDHTIk~WDletg~~~~~~---------~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~  341 (423)
T KOG0313|consen  272 TVIYSVSWDHTIKVWDLETGGLKSTL---------TTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSL  341 (423)
T ss_pred             CceEeecccceEEEEEeecccceeee---------ecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEee
Confidence            4555 679999999999885332221         1234589999999 78899999999999999998764   67788


Q ss_pred             ccccCCeEEEEECCCCcE-EEEeeccCCeEEEEecccceeee
Q 022019          262 HGQEGGVTHVQFSRDGNY-LYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       262 ~~~~~~v~~~~~~~~~~~-l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      .+|.+.|.++.|+|...+ |++++ .|+++++||+++.+-.+
T Consensus       342 ~gH~nwVssvkwsp~~~~~~~S~S-~D~t~klWDvRS~k~pl  382 (423)
T KOG0313|consen  342 IGHKNWVSSVKWSPTNEFQLVSGS-YDNTVKLWDVRSTKAPL  382 (423)
T ss_pred             ecchhhhhheecCCCCceEEEEEe-cCCeEEEEEeccCCCcc
Confidence            999999999999998776 55666 99999999999987443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1.8e-26  Score=192.08  Aligned_cols=201  Identities=19%  Similarity=0.302  Sum_probs=171.1

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+.||.+.|+++++...+.+|++|+.|.++++||..++....                 ....|...+.++..       
T Consensus       244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~-----------------~l~gh~stv~~~~~-------  299 (537)
T KOG0274|consen  244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH-----------------SLQGHTSSVRCLTI-------  299 (537)
T ss_pred             eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE-----------------EecCCCceEEEEEc-------
Confidence            489999999999998878899999999999999988765532                 34456678888765       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                        ....+++|+.|.+|++|++.++..+..+..|..     +|.++..+  +.++++| .|++|++||+.+        ..
T Consensus       300 --~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~-----~V~~v~~~--~~~lvsgs~d~~v~VW~~~~--------~~  362 (537)
T KOG0274|consen  300 --DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG-----PVNCVQLD--EPLLVSGSYDGTVKVWDPRT--------GK  362 (537)
T ss_pred             --cCceEeeccCCceEEEEeccCcceEEEeccccc-----cEEEEEec--CCEEEEEecCceEEEEEhhh--------ce
Confidence              445788899999999999999999988886554     99999998  6677755 999999999985        34


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-eEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                      +.....+|...|+++.+.+ . ..+++|+.|+.|++||+++. +++.++.+|..-+..+.+  .+++|++++ .|++|++
T Consensus       363 cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~-aD~~Ik~  437 (537)
T KOG0274|consen  363 CLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS-ADGTIKL  437 (537)
T ss_pred             eeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc-ccccEEE
Confidence            4444578999999998877 3 68999999999999999999 999999999998877666  578899999 9999999


Q ss_pred             Eecccceee
Q 022019          293 WDLRKAVQV  301 (304)
Q Consensus       293 wd~~~~~~~  301 (304)
                      ||..+++++
T Consensus       438 WD~~~~~~~  446 (537)
T KOG0274|consen  438 WDAEEGECL  446 (537)
T ss_pred             eecccCcee
Confidence            999998775

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.2e-26  Score=178.50  Aligned_cols=207  Identities=15%  Similarity=0.256  Sum_probs=164.9

Q ss_pred             ecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC
Q 022019           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (304)
                      +....+.|.+++|-.||++||.|+..|.|+|||+++.....                 ....|..++....|+|.     
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR-----------------~~~ah~apv~~~~f~~~-----  121 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR-----------------QLYAHQAPVHVTKFSPQ-----  121 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH-----------------HHhhccCceeEEEeccc-----
Confidence            34456789999999999999999999999999976422221                 33456688888888665     


Q ss_pred             CCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeee
Q 022019          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       136 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                       ++..|++|++|+.+++||+.+......+..|..     .|.+.+|+|....++ +| .||.|++||++......   ..
T Consensus       122 -d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD-----YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v---~e  192 (487)
T KOG0310|consen  122 -DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD-----YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV---VE  192 (487)
T ss_pred             -CCeEEEecCCCceEEEEEcCCcEEEEEecCCcc-----eeEeeccccCCCeEEEecCCCceEEEEEeccCCcee---EE
Confidence             677899999999999999998876445555554     999999999877555 66 99999999999743111   11


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC-ceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                           ..|..+|..+.+-| ++.++++++. ..|++||+-+ ++.+..+..|...|+|+.+..++..|++++ -|+.+++
T Consensus       193 -----lnhg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s-LD~~VKV  264 (487)
T KOG0310|consen  193 -----LNHGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS-LDRHVKV  264 (487)
T ss_pred             -----ecCCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc-cccceEE
Confidence                 45788899999999 7778888764 5799999985 455666666999999999999999999999 9999999


Q ss_pred             Eecccceee
Q 022019          293 WDLRKAVQV  301 (304)
Q Consensus       293 wd~~~~~~~  301 (304)
                      ||+.+-+.+
T Consensus       265 fd~t~~Kvv  273 (487)
T KOG0310|consen  265 FDTTNYKVV  273 (487)
T ss_pred             EEccceEEE
Confidence            998776543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=3.5e-25  Score=166.96  Aligned_cols=212  Identities=12%  Similarity=0.140  Sum_probs=179.4

Q ss_pred             ceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      ..+..+..|++.|.+++.+|+.++++||+.|..-.||++.++...                 .....|+..|.++.|   
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-----------------~eltgHKDSVt~~~F---  114 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-----------------GELTGHKDSVTCCSF---  114 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-----------------eEecCCCCceEEEEE---
Confidence            344578899999999999999999999999999999999876532                 245567799999988   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                          +.+|.+||+|.-+|.|+||...++.....+...-.     .+.=+.|+|.+..|++| .||.+.+|.+...     
T Consensus       115 ----shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~-----dieWl~WHp~a~illAG~~DGsvWmw~ip~~-----  180 (399)
T KOG0296|consen  115 ----SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE-----DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-----  180 (399)
T ss_pred             ----ccCceEEEecCCCccEEEEEcccCceEEEeecccC-----ceEEEEecccccEEEeecCCCcEEEEECCCc-----
Confidence                88999999999999999999999987777652222     67789999999999977 9999999999762     


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc-CCeEEEEECCCCcEEEEeeccCC
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQFSRDGNYLYTGGRKDP  288 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~d~  288 (304)
                         .......+|..++++=.|.| +++.++++..||+|++||+.++.++..+.+.. ....++.++..+..++.|+ .++
T Consensus       181 ---~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~-~e~  255 (399)
T KOG0296|consen  181 ---ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN-SEG  255 (399)
T ss_pred             ---ceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc-CCc
Confidence               12222378999999999999 68899999999999999999999999987433 3578899999999999998 999


Q ss_pred             eEEEEecccceee
Q 022019          289 YILCWDLRKAVQV  301 (304)
Q Consensus       289 ~i~vwd~~~~~~~  301 (304)
                      .+++-+..+|+.+
T Consensus       256 ~~~~~~~~sgKVv  268 (399)
T KOG0296|consen  256 VACGVNNGSGKVV  268 (399)
T ss_pred             cEEEEccccceEE
Confidence            9999998888765

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=6.3e-25  Score=183.59  Aligned_cols=182  Identities=18%  Similarity=0.300  Sum_probs=136.9

Q ss_pred             ecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCC
Q 022019           78 SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT  157 (304)
Q Consensus        78 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  157 (304)
                      |+.++.|++|+....                 ........|...|.+++|+|.      ++.+|++|+.||+|++||+.+
T Consensus        50 GG~~gvI~L~~~~r~-----------------~~v~~L~gH~~~V~~lafsP~------~~~lLASgS~DgtIrIWDi~t  106 (568)
T PTZ00420         50 GGLIGAIRLENQMRK-----------------PPVIKLKGHTSSILDLQFNPC------FSEILASGSEDLTIRVWEIPH  106 (568)
T ss_pred             CCceeEEEeeecCCC-----------------ceEEEEcCCCCCEEEEEEcCC------CCCEEEEEeCCCeEEEEECCC
Confidence            556778888876532                 112244567789999999442      367999999999999999986


Q ss_pred             Cee--------eEEeecccccccccceEEEEECCCCcEE-EE-EcCCeEEEEEcCCCCccceeeeeeeccccccccceeE
Q 022019          158 GLL--------RCTYRAYDAVDEITAAFSVAFNPTGTKI-FA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA  227 (304)
Q Consensus       158 ~~~--------~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~  227 (304)
                      +..        ...+..|     ...|.+++|+|++..+ ++ +.|+.|++||++.....    ..+     .+...|.+
T Consensus       107 ~~~~~~~i~~p~~~L~gH-----~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~----~~i-----~~~~~V~S  172 (568)
T PTZ00420        107 NDESVKEIKDPQCILKGH-----KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA----FQI-----NMPKKLSS  172 (568)
T ss_pred             CCccccccccceEEeecC-----CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE----EEE-----ecCCcEEE
Confidence            421        2233333     3489999999998765 44 48999999999874211    111     13456999


Q ss_pred             EEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEE-----EEECCCCcEEEEeeccCC----eEEEEecccc
Q 022019          228 IAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH-----VQFSRDGNYLYTGGRKDP----YILCWDLRKA  298 (304)
Q Consensus       228 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~~d~----~i~vwd~~~~  298 (304)
                      ++|+| ++.+|++++.|+.|+|||+++++.+.++.+|.+.+..     ..|++++.+|+++| .|+    .|+|||+++.
T Consensus       173 lswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG-~d~~~~R~VkLWDlr~~  250 (568)
T PTZ00420        173 LKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTG-FSKNNMREMKLWDLKNT  250 (568)
T ss_pred             EEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEE-cCCCCccEEEEEECCCC
Confidence            99999 7779999999999999999999999999999876433     34568999999988 664    7999999963

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=9.8e-26  Score=173.55  Aligned_cols=203  Identities=20%  Similarity=0.313  Sum_probs=168.9

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      ...++++...|....++||+.|..+.++|...+....                 +..+|...|..+.+       +|+..
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~-----------------~~~Gh~kki~~v~~-------~~~~~  274 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA-----------------TLKGHTKKITSVKF-------HKDLD  274 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhh-----------------hccCcceEEEEEEe-------ccchh
Confidence            3568888888887899999999999999988665433                 34455578888877       66777


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCccceeeeeeeccc
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                      .+++++.|..|++|.............|..     +|+.+..+|.|.||+. +.|+++.+.|++.+.    .+.....  
T Consensus       275 ~v~~aSad~~i~vws~~~~s~~~~~~~h~~-----~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~----~lt~vs~--  343 (506)
T KOG0289|consen  275 TVITASADEIIRVWSVPLSSEPTSSRPHEE-----PVTGLSLHPTGEYLLSASNDGTWAFSDISSGS----QLTVVSD--  343 (506)
T ss_pred             heeecCCcceEEeeccccccCccccccccc-----cceeeeeccCCcEEEEecCCceEEEEEccCCc----EEEEEee--
Confidence            899999999999999887666656665554     9999999999999995 599999999998752    1122111  


Q ss_pred             cccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       219 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      ....-.+++.+|+| ++.+|.+|+.||.|+|||+.+...+..|.+|.++|..++|+.+|-||++++ +|+.|++||+|..
T Consensus       344 ~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl  421 (506)
T KOG0289|consen  344 ETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKL  421 (506)
T ss_pred             ccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhh
Confidence            12334589999999 888999999999999999999999999999999999999999999999999 9999999999976


Q ss_pred             e
Q 022019          299 V  299 (304)
Q Consensus       299 ~  299 (304)
                      +
T Consensus       422 ~  422 (506)
T KOG0289|consen  422 K  422 (506)
T ss_pred             c
Confidence            5

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=3.3e-26  Score=172.42  Aligned_cols=243  Identities=16%  Similarity=0.259  Sum_probs=173.8

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccc---------c-
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSL---------A-  104 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~---------~-  104 (304)
                      .+..|++.......      .+..|.+.|.+|++..  ..+++++.|++|+.|-+..... ..+.....         . 
T Consensus        90 ~VkiWnlsqR~~~~------~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~-~tilg~s~~~gIdh~~~~~  160 (433)
T KOG0268|consen   90 EVKIWNLSQRECIR------TFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPL-HTILGKSVYLGIDHHRKNS  160 (433)
T ss_pred             eEEEEehhhhhhhh------eeecccCceeeEEecc--cceEEecCCcceeeeeccCCcc-eeeeccccccccccccccc
Confidence            34455555554443      7889999999999986  6789999999999998654211 00000000         0 


Q ss_pred             --ccCCccceEEEeecCCeEEEEeecCc---cceeCCCc-cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEE
Q 022019          105 --KDQDSYEASLVVTEGESVYDFCWFPH---MSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS  178 (304)
Q Consensus       105 --~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~  178 (304)
                        ................++.++.|...   ++.|+|.. ..|++|+.|+.|.+||++++.++.......      .-+.
T Consensus       161 ~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m------RTN~  234 (433)
T KOG0268|consen  161 VFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM------RTNT  234 (433)
T ss_pred             cccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec------cccc
Confidence              00011112233344556777777443   34556654 467788899999999999998887665543      4568


Q ss_pred             EEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE
Q 022019          179 VAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL  257 (304)
Q Consensus       179 i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~  257 (304)
                      |+|+|.+-.++++ .|..++.||++...       .......+|.+.|.+++|+| .|.-+++||.|.+|+||..+.+..
T Consensus       235 IswnPeafnF~~a~ED~nlY~~DmR~l~-------~p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~S  306 (433)
T KOG0268|consen  235 ICWNPEAFNFVAANEDHNLYTYDMRNLS-------RPLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHS  306 (433)
T ss_pred             eecCccccceeeccccccceehhhhhhc-------ccchhhcccceeEEEeccCC-CcchhccccccceEEEeecCCCcc
Confidence            9999977666666 99999999998753       33344478999999999999 788999999999999999987754


Q ss_pred             eEEeccc-cCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          258 LYVLHGQ-EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       258 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      -..+... -..|.++.||.|.+|+++|+ +|+.|++|.....+++
T Consensus       307 RdiYhtkRMq~V~~Vk~S~Dskyi~SGS-dd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  307 RDIYHTKRMQHVFCVKYSMDSKYIISGS-DDGNVRLWKAKASEKL  350 (433)
T ss_pred             hhhhhHhhhheeeEEEEeccccEEEecC-CCcceeeeecchhhhc
Confidence            4333211 23699999999999999999 9999999988765543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.6e-25  Score=162.89  Aligned_cols=249  Identities=18%  Similarity=0.314  Sum_probs=178.5

Q ss_pred             cHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcC--CCCeEEEecCCCeEEEeeCCCCCCccccc
Q 022019           22 TEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVN   99 (304)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~   99 (304)
                      .++++.++....|     +..  ..-..+......+.|.+.|..+.|.+  -|+.+|+++.|++++||.-.......   
T Consensus        28 mAtCSsDq~vkI~-----d~~--~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~---   97 (361)
T KOG2445|consen   28 MATCSSDQTVKIW-----DST--SDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA---   97 (361)
T ss_pred             eeeccCCCcEEEE-----ecc--CCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccc---
Confidence            3445555555544     321  11223344557789999999999976  68999999999999999753211110   


Q ss_pred             cccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccccc--------c
Q 022019          100 ACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV--------D  171 (304)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~  171 (304)
                           .+...............|++++|.|..     -|-.+++++.||.++||+.-..-.+..+......        .
T Consensus        98 -----~~~~Wv~~ttl~DsrssV~DV~FaP~h-----lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   98 -----HGRRWVRRTTLVDSRSSVTDVKFAPKH-----LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             -----ccceeEEEEEeecCCcceeEEEecchh-----cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence                 011223334555667899999998854     4568999999999999987654333322221111        2


Q ss_pred             cccceEEEEECCC---CcEEEEEcCC------eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCC---cEEE
Q 022019          172 EITAAFSVAFNPT---GTKIFAGYNK------SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT---GMLA  239 (304)
Q Consensus       172 ~~~~v~~i~~~~~---~~~l~~~~d~------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~  239 (304)
                      +..+..|+.|+|.   ..+|++|.|.      .++||......+.......+    .+|..+|++++|.|+-+   .+||
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L----~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL----PDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc----CCCCCcceeeeeccccCCceeeEE
Confidence            3447789999985   4678888665      89999987766555444443    58899999999999644   4899


Q ss_pred             EEecCCeEEEEecCCc--------------------eEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          240 IGSYSQTSAIYREDNM--------------------ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       240 ~~~~dg~i~i~d~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      +++.|| |+||.++..                    +.+..+..|.+.|..+.|+-.|..|++.| .||+|++|...
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStG-dDG~VRLWkan  318 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTG-DDGCVRLWKAN  318 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecC-CCceeeehhhh
Confidence            999999 999998631                    34566779999999999999999999999 99999999753

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.7e-25  Score=160.16  Aligned_cols=215  Identities=18%  Similarity=0.244  Sum_probs=164.0

Q ss_pred             ceeeeecCCCCceeEEEEcC--CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeec
Q 022019           51 NQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF  128 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  128 (304)
                      +.+..+.||.++|+.++|..  -|..||++++||.|.||.-.++.....               .....|...|.+++|.
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~---------------~e~~~h~~SVNsV~wa  111 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA---------------YEHAAHSASVNSVAWA  111 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh---------------hhhhhhcccceeeccc
Confidence            44668999999999999976  899999999999999998876533211               1233466899999998


Q ss_pred             CccceeCCCccEEEEEeCCCCEEEEEcCCC-ee--eEEeecccccccccceEEEEECCC---C-----------cEEEE-
Q 022019          129 PHMSASDPTSCVFASTTRDHPIHLWDATTG-LL--RCTYRAYDAVDEITAAFSVAFNPT---G-----------TKIFA-  190 (304)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~--~~~~~~~~~~~~~~~v~~i~~~~~---~-----------~~l~~-  190 (304)
                      |+.     -|-.|++++.||.|.|.+.+.. ..  ......     |...|++++|.|.   |           +.|++ 
T Consensus       112 phe-----ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a-----H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg  181 (299)
T KOG1332|consen  112 PHE-----YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA-----HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG  181 (299)
T ss_pred             ccc-----cceEEEEeeCCCcEEEEEEcCCCCccchhhhhc-----cccccceeeecCcCCCccccccCcccccceeecc
Confidence            853     4558999999999999998754 11  111222     3348999999986   4           45775 


Q ss_pred             EcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCC---CcEEEEEecCCeEEEEecCCce---EeEEeccc
Q 022019          191 GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH---TGMLAIGSYSQTSAIYREDNME---LLYVLHGQ  264 (304)
Q Consensus       191 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~  264 (304)
                      |.|..|+||+.....      ..+...+.+|.+.|+.++|.|..   ...|++++.||++.||..+...   ....++..
T Consensus       182 GcDn~VkiW~~~~~~------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f  255 (299)
T KOG1332|consen  182 GCDNLVKIWKFDSDS------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF  255 (299)
T ss_pred             CCccceeeeecCCcc------hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC
Confidence            599999999997641      22333358999999999999954   3589999999999999776321   12233345


Q ss_pred             cCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       265 ~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      ...+..++||+.|..|+.++ .|+.+.+|.-+.
T Consensus       256 ~~~~w~vSWS~sGn~LaVs~-GdNkvtlwke~~  287 (299)
T KOG1332|consen  256 PDVVWRVSWSLSGNILAVSG-GDNKVTLWKENV  287 (299)
T ss_pred             CcceEEEEEeccccEEEEec-CCcEEEEEEeCC
Confidence            56899999999999999999 999999997654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=2e-26  Score=176.20  Aligned_cols=205  Identities=18%  Similarity=0.268  Sum_probs=162.1

Q ss_pred             eeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      .++.|..++|+++.|.+++.++++++.|+.+++|++.......                 .+.+|...|+++.|.-    
T Consensus       213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~-----------------TLsGHtdkVt~ak~~~----  271 (459)
T KOG0288|consen  213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH-----------------TLSGHTDKVTAAKFKL----  271 (459)
T ss_pred             hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh-----------------hhcccccceeeehhhc----
Confidence            3677889999999999999999999999999999998654433                 3334668888887732    


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeee
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~  212 (304)
                         ....+++|+.|.+|++||+....+..++-...      .+..|..+  ...+++| .|++|++||++.....    .
T Consensus       272 ---~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S------~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~----~  336 (459)
T KOG0288|consen  272 ---SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS------QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKT----R  336 (459)
T ss_pred             ---cccceeeccccchhhhhhhhhhheeccccccc------cccceEec--ceeeeecccccceEEEeccCCcee----e
Confidence               33349999999999999999887776655433      55566665  4455677 9999999999874211    1


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccc----cCCeEEEEECCCCcEEEEeeccCC
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ----EGGVTHVQFSRDGNYLYTGGRKDP  288 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~d~  288 (304)
                      .    .+ -.+.|+++..++ ++..+++++.|.++.++|+++.+....+...    ....+.+.|||++.|+++|+ .||
T Consensus       337 s----v~-~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-~dg  409 (459)
T KOG0288|consen  337 S----VP-LGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-ADG  409 (459)
T ss_pred             E----ee-cCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc-CCC
Confidence            1    12 234799999999 7778888899999999999999887777632    23488999999999999999 999


Q ss_pred             eEEEEecccceee
Q 022019          289 YILCWDLRKAVQV  301 (304)
Q Consensus       289 ~i~vwd~~~~~~~  301 (304)
                      .|+||++.+++..
T Consensus       410 sv~iW~v~tgKlE  422 (459)
T KOG0288|consen  410 SVYIWSVFTGKLE  422 (459)
T ss_pred             cEEEEEccCceEE
Confidence            9999999998764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.7e-24  Score=160.49  Aligned_cols=210  Identities=21%  Similarity=0.277  Sum_probs=158.0

Q ss_pred             ceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      +-++-+.||...|++|+.+|-++.+++++.|++|++||++..+...                 +....         .+.
T Consensus        91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg-----------------~l~~~---------~~p  144 (311)
T KOG1446|consen   91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG-----------------LLNLS---------GRP  144 (311)
T ss_pred             ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce-----------------EEecC---------CCc
Confidence            4566889999999999999988999999999999999998443211                 11111         122


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCC--eeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcc
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRD  207 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~  207 (304)
                      ..+++|+|-++|++.....|++||++.-  .+..++....  ......+.|.|+|+|++|+.+ ..+.+++.|.-.+.  
T Consensus       145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~--  220 (311)
T KOG1446|consen  145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD--NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT--  220 (311)
T ss_pred             ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc--
Confidence            3466999999999998889999999853  3444444432  222378899999999999966 88899999987643  


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc-ccCCeEEEEECCCCcEEEEeecc
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQFSRDGNYLYTGGRK  286 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~  286 (304)
                        ....+.....+... ..+.+|+| +++++++|+.||+|++|+++++..+..+.+ +.+++.++.|+|.-.++++++  
T Consensus       221 --~~~tfs~~~~~~~~-~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--  294 (311)
T KOG1446|consen  221 --VKSTFSGYPNAGNL-PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--  294 (311)
T ss_pred             --EeeeEeeccCCCCc-ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--
Confidence              11222222122222 25788999 788999999999999999999999999998 688999999999877777654  


Q ss_pred             CCeEEEEeccc
Q 022019          287 DPYILCWDLRK  297 (304)
Q Consensus       287 d~~i~vwd~~~  297 (304)
                       ..+.+|=...
T Consensus       295 -s~l~fw~p~~  304 (311)
T KOG1446|consen  295 -SNLVFWLPDE  304 (311)
T ss_pred             -ceEEEEeccc
Confidence             5788886654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=3.2e-25  Score=181.46  Aligned_cols=206  Identities=17%  Similarity=0.328  Sum_probs=165.0

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      .+.+..|.|.++++++|...|.+.+||+........+                 ..|...+++++-       +||+..+
T Consensus       414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti-----------------~AHdgaIWsi~~-------~pD~~g~  469 (888)
T KOG0306|consen  414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETI-----------------RAHDGAIWSISL-------SPDNKGF  469 (888)
T ss_pred             cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhh-----------------hccccceeeeee-------cCCCCce
Confidence            6777777777777777777777888877654433222                 245577877765       8899999


Q ss_pred             EEEeCCCCEEEEEcCC-----CeeeE--EeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeee
Q 022019          142 ASTTRDHPIHLWDATT-----GLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       142 ~~~~~dg~i~i~d~~~-----~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      ++|+.|.+|++||+.-     +....  .+.......-...|.|+.+||||+++++| -|++|+||-+.+        ..
T Consensus       470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt--------lK  541 (888)
T KOG0306|consen  470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT--------LK  541 (888)
T ss_pred             EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc--------ee
Confidence            9999999999999741     21111  11111112223489999999999999999 999999999987        33


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEE
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW  293 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vw  293 (304)
                      +.-...||.-||.||..+| ++.++++||.|..|++|-++-|.+-.++.+|...|.++.|-|+...++++| .|+.|+-|
T Consensus       542 FflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~g-KD~kvKqW  619 (888)
T KOG0306|consen  542 FFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCG-KDGKVKQW  619 (888)
T ss_pred             eeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEec-CcceEEee
Confidence            4444589999999999999 788999999999999999999999999999999999999999999999999 99999999


Q ss_pred             ecccceee
Q 022019          294 DLRKAVQV  301 (304)
Q Consensus       294 d~~~~~~~  301 (304)
                      |-...+++
T Consensus       620 Dg~kFe~i  627 (888)
T KOG0306|consen  620 DGEKFEEI  627 (888)
T ss_pred             chhhhhhh
Confidence            98876655

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3e-26  Score=184.52  Aligned_cols=242  Identities=19%  Similarity=0.261  Sum_probs=187.2

Q ss_pred             hcHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccc
Q 022019           21 VTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA  100 (304)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~  100 (304)
                      +..+++.|.....|..     ..............+..|.+.|+.+....+|+-|++++.|-+|++|+.....       
T Consensus        39 yLfTgGRDg~i~~W~~-----~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-------  106 (735)
T KOG0308|consen   39 YLFTGGRDGIIRLWSV-----TQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-------  106 (735)
T ss_pred             eEEecCCCceEEEecc-----ccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-------
Confidence            4555666666666643     3222211111234778999999999999999999999999999999987442       


Q ss_pred             ccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCee--eEEeec---cccc-cccc
Q 022019          101 CSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL--RCTYRA---YDAV-DEIT  174 (304)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~---~~~~-~~~~  174 (304)
                              .........|...|.++++.      -++..++|+|+-|+.|++||+.++..  +..+..   .... ++..
T Consensus       107 --------~~c~stir~H~DYVkcla~~------ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~  172 (735)
T KOG0308|consen  107 --------TFCMSTIRTHKDYVKCLAYI------AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD  172 (735)
T ss_pred             --------chhHhhhhcccchheeeeec------ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence                    11112344566788888763      34778999999999999999998732  222211   1111 4556


Q ss_pred             ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC
Q 022019          175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~  253 (304)
                      .|++++-++.|..|++| ..+.+++||.++..+.    ..    ..+|...|.++..++ +|..+++++.||+|++||+.
T Consensus       173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki----mk----LrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLg  243 (735)
T KOG0308|consen  173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI----MK----LRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLG  243 (735)
T ss_pred             ceeeeecCCcceEEEecCcccceEEeccccccce----ee----eeccccceEEEEEcC-CCCeEeecCCCceEEeeecc
Confidence            89999999999888865 9999999999885321    11    268999999999999 78899999999999999999


Q ss_pred             CceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          254 NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       254 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      ..+++.++..|+..|+++..+|+-.++++|+ .||.|..=|+++.
T Consensus       244 qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  244 QQRCLATYIVHKEGVWALQSSPSFTHVYSGG-RDGNIYRTDLRNP  287 (735)
T ss_pred             ccceeeeEEeccCceEEEeeCCCcceEEecC-CCCcEEecccCCc
Confidence            9999999999999999999999999999999 9999999999883

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.1e-25  Score=170.86  Aligned_cols=215  Identities=18%  Similarity=0.250  Sum_probs=171.8

Q ss_pred             cceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC
Q 022019           50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (304)
Q Consensus        50 ~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (304)
                      .....++..|.+.|+-+.||++|+||||++.|.+..+|++.....              -.......+|..+|..+.|  
T Consensus       214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~--------------~kl~~tlvgh~~~V~yi~w--  277 (519)
T KOG0293|consen  214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH--------------FKLKKTLVGHSQPVSYIMW--  277 (519)
T ss_pred             chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc--------------eeeeeeeecccCceEEEEE--
Confidence            345568889999999999999999999999999999999764321              1122356678889999988  


Q ss_pred             ccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccc
Q 022019          130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~  208 (304)
                           |||.+++++|+.|..+.+||+.+|.....+...    +...+.+.+|.|||..+++| .|++|..||+...  ..
T Consensus       278 -----SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~----~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn--~~  346 (519)
T KOG0293|consen  278 -----SPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG----LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN--IL  346 (519)
T ss_pred             -----CCCCCeEEecCchHheeeccCCcchhhhhcccC----cCCCcceeEEccCCceeEecCCCCcEEEecCCcc--hh
Confidence                 889999999999999999999999887766543    12378899999999999977 9999999999752  11


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCC
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP  288 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~  288 (304)
                         ......   ....|.+++.++ ++..+++.+.|..|++|+.........+. ...+|++++.|.||+++++.- .+.
T Consensus       347 ---~~W~gv---r~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL-~~q  417 (519)
T KOG0293|consen  347 ---GNWEGV---RDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL-QDQ  417 (519)
T ss_pred             ---hccccc---ccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc-ccC
Confidence               122111   123488999999 66777778899999999988766555444 457899999999999998888 899


Q ss_pred             eEEEEeccccee
Q 022019          289 YILCWDLRKAVQ  300 (304)
Q Consensus       289 ~i~vwd~~~~~~  300 (304)
                      .+++||+...+.
T Consensus       418 ei~LWDl~e~~l  429 (519)
T KOG0293|consen  418 EIHLWDLEENKL  429 (519)
T ss_pred             eeEEeecchhhH
Confidence            999999986543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.6e-26  Score=183.46  Aligned_cols=219  Identities=15%  Similarity=0.274  Sum_probs=162.8

Q ss_pred             CCCcee---EEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           59 PNNFLK---GIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        59 h~~~V~---~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      |...|.   .+..++ .++||+|||.||.|++|++....-.....           .......|..-|.++..       
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-----------~~asme~HsDWVNDiiL-------   81 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-----------YIASMEHHSDWVNDIIL-------   81 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc-----------hhhhhhhhHhHHhhHHh-------
Confidence            444555   455554 67789999999999999986432210000           01112223333444332       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCC--eeeEEeecccccccccceEEEEE-CCCCcEEEEE-cCCeEEEEEcCCCCc-cce
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAF-NPTGTKIFAG-YNKSVRVFDVHRPGR-DFE  209 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~l~~~-~d~~i~v~d~~~~~~-~~~  209 (304)
                      ..+++.|++++.|-+|++|+...+  -+..++..|..     .|.|+++ -++...+++| -|+.|.+||++.+.. ...
T Consensus        82 ~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~D-----YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~  156 (735)
T KOG0308|consen   82 CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKD-----YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVA  156 (735)
T ss_pred             hcCCCceEEecCCceEEEeecccCcchhHhhhhcccc-----hheeeeecccCceeEEecCCCccEEEEEccCcchhhhh
Confidence            457889999999999999999877  35555665554     8999999 6666777754 999999999987522 110


Q ss_pred             eee--eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccC
Q 022019          210 KYS--TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD  287 (304)
Q Consensus       210 ~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d  287 (304)
                      ...  +......++...|++++.++ .+.++++|+.++.+++||.++++.+..+.||...|..+..++||+.+++++ .|
T Consensus       157 s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s-SD  234 (735)
T KOG0308|consen  157 SFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS-SD  234 (735)
T ss_pred             hccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC-CC
Confidence            011  11111237888899999999 778999999999999999999999999999999999999999999999999 99


Q ss_pred             CeEEEEecccceeee
Q 022019          288 PYILCWDLRKAVQVV  302 (304)
Q Consensus       288 ~~i~vwd~~~~~~~~  302 (304)
                      |+|++||+...+++.
T Consensus       235 gtIrlWdLgqQrCl~  249 (735)
T KOG0308|consen  235 GTIRLWDLGQQRCLA  249 (735)
T ss_pred             ceEEeeeccccceee
Confidence            999999999887763

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1.4e-24  Score=156.92  Aligned_cols=235  Identities=16%  Similarity=0.172  Sum_probs=159.2

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccc----------
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSL----------  103 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~----------  103 (304)
                      .+..|++...+...    -....+|.+.|-.++|+| ....|++++.|.+|++||+..++....+.....          
T Consensus        43 tv~v~n~e~~r~~~----~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g  118 (313)
T KOG1407|consen   43 TVSVWNLERDRFRK----ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDG  118 (313)
T ss_pred             ceEEEEecchhhhh----hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCC
Confidence            44455555553222    125679999999999998 667999999999999999987765322221100          


Q ss_pred             ----cccCCccceEEEee---------cCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccccc
Q 022019          104 ----AKDQDSYEASLVVT---------EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV  170 (304)
Q Consensus       104 ----~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  170 (304)
                          ..+.+.....+...         ....+..++|       +.++.+|+.....|+|.|.....-+++..+..|.  
T Consensus       119 ~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w-------~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~--  189 (313)
T KOG1407|consen  119 EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISW-------NNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP--  189 (313)
T ss_pred             CEEEEecCcccEEEEEecccceeehhcccceeeeeee-------cCCCCEEEEecCCceEEEEeccccccccccccCC--
Confidence                00000000000000         0011222222       3344445544445556665555555555555544  


Q ss_pred             ccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEE
Q 022019          171 DEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAI  249 (304)
Q Consensus       171 ~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  249 (304)
                         ..+.||.|+|+|+++|+| .|..+.+||+...    .+...    +..+.-+|+.+.|+- ++++||+||+|..|-|
T Consensus       190 ---snCicI~f~p~GryfA~GsADAlvSLWD~~EL----iC~R~----isRldwpVRTlSFS~-dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  190 ---SNCICIEFDPDGRYFATGSADALVSLWDVDEL----ICERC----ISRLDWPVRTLSFSH-DGRMLASASEDHFIDI  257 (313)
T ss_pred             ---cceEEEEECCCCceEeeccccceeeccChhHh----hhhee----eccccCceEEEEecc-CcceeeccCccceEEe
Confidence               388999999999999977 9999999999642    11122    245677899999999 8889999999999999


Q ss_pred             EecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccC---------CeEEEEecc
Q 022019          250 YREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD---------PYILCWDLR  296 (304)
Q Consensus       250 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d---------~~i~vwd~~  296 (304)
                      -+.++|..+..++ +.++...++|+|...+||-++ +|         |.+++|-+.
T Consensus       258 A~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~-ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  258 AEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYAC-DDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             EecccCCeEEEee-ccCCceeEEecCCCceeeEEe-cCCCCccccccceeEEecCC
Confidence            9999999999998 788999999999999998777 33         567776554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.5e-26  Score=187.52  Aligned_cols=202  Identities=17%  Similarity=0.301  Sum_probs=157.5

Q ss_pred             eeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           63 LKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        63 V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      +..++|.. +.++|||++..|.|.+||+....              ..........|...+.++.|++.      ...+|
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--------------rnk~l~~f~EH~Rs~~~ldfh~t------ep~il  149 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI--------------RNKLLTVFNEHERSANKLDFHST------EPNIL  149 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccc--------------cchhhhHhhhhccceeeeeeccC------CccEE
Confidence            55688876 66799999999999999997421              11111244567789999999865      44589


Q ss_pred             EEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC-CcEEEEE-cCCeEEEEEcCCCCccceeeeeeecccc
Q 022019          142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (304)
Q Consensus       142 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~  219 (304)
                      ++|++||.|++||++..+...++.....     .|..+.|+|. +..++++ ..|.+.+||+|.+.+..       ..+.
T Consensus       150 iSGSQDg~vK~~DlR~~~S~~t~~~nSE-----SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~-------~k~~  217 (839)
T KOG0269|consen  150 ISGSQDGTVKCWDLRSKKSKSTFRSNSE-----SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE-------KKLT  217 (839)
T ss_pred             EecCCCceEEEEeeecccccccccccch-----hhhceeeccCCCceEEEecCCceEEEeeccCchhHH-------HHhh
Confidence            9999999999999998887777766443     8999999995 5666666 88999999999864333       3337


Q ss_pred             ccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce--EeEEeccccCCeEEEEECCCCcEE-EEee-ccCCeEEEEec
Q 022019          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRDGNYL-YTGG-RKDPYILCWDL  295 (304)
Q Consensus       220 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l-~~~~-~~d~~i~vwd~  295 (304)
                      +|.++|.++.|+| ++.+||+|+.|+.|+|||..+.+  ++.++. ...+|..+.|-|..++. ++++ -.|-.|+|||+
T Consensus       218 AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv  295 (839)
T KOG0269|consen  218 AHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV  295 (839)
T ss_pred             cccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEee
Confidence            8999999999999 88899999999999999997654  444444 34689999999988764 4443 25778999999


Q ss_pred             ccc
Q 022019          296 RKA  298 (304)
Q Consensus       296 ~~~  298 (304)
                      +..
T Consensus       296 rRP  298 (839)
T KOG0269|consen  296 RRP  298 (839)
T ss_pred             ccc
Confidence            864

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=4.3e-25  Score=167.21  Aligned_cols=226  Identities=17%  Similarity=0.239  Sum_probs=160.9

Q ss_pred             eecCCCCceeEEEEcCCC--CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           55 TSSIPNNFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~--~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ..-+|.+.++.+.-++-+  .+.++-+..|.|.||++.............. ........-....|+..-+.++|+|.  
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~-~~s~~~Pl~t~~ghk~EGy~LdWSp~--  222 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEV-KDSEFRPLFTFNGHKGEGYGLDWSPI--  222 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccc-cccccCceEEecccCccceeeecccc--
Confidence            345788899999988854  4677778899999999864322111111100 01122222344556778889999663  


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCc-EEE-EEcCCeEEEEEcCCCCcccee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIF-AGYNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~-~~~d~~i~v~d~~~~~~~~~~  210 (304)
                          ....|++|.--+.|++|...++....--.  ...+|...|..++|+|..+ .|+ ++.||+|+|||+|........
T Consensus       223 ----~~g~LlsGDc~~~I~lw~~~~g~W~vd~~--Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~  296 (440)
T KOG0302|consen  223 ----KTGRLLSGDCVKGIHLWEPSTGSWKVDQR--PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV  296 (440)
T ss_pred             ----cccccccCccccceEeeeeccCceeecCc--cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence                12247788777889999998875432211  1223555899999999754 444 459999999999985332221


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC---ceEeEEeccccCCeEEEEECCCC-cEEEEeecc
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN---MELLYVLHGQEGGVTHVQFSRDG-NYLYTGGRK  286 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~  286 (304)
                      . .     .+|.+.|..+.|+.. -.+|++|+.||+++|||+++   ++++.+|+-|..+|+++.|+|.. ..|+++| .
T Consensus       297 ~-~-----kAh~sDVNVISWnr~-~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-~  368 (440)
T KOG0302|consen  297 S-T-----KAHNSDVNVISWNRR-EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-E  368 (440)
T ss_pred             E-e-----eccCCceeeEEccCC-cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-C
Confidence            1 1     678889999999994 44999999999999999985   46899999999999999999965 4566666 8


Q ss_pred             CCeEEEEeccc
Q 022019          287 DPYILCWDLRK  297 (304)
Q Consensus       287 d~~i~vwd~~~  297 (304)
                      |..|.+||+.-
T Consensus       369 D~QitiWDlsv  379 (440)
T KOG0302|consen  369 DNQITIWDLSV  379 (440)
T ss_pred             CCcEEEEEeec
Confidence            99999999964

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=4.1e-25  Score=163.59  Aligned_cols=218  Identities=16%  Similarity=0.210  Sum_probs=169.2

Q ss_pred             cccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEE
Q 022019           46 TYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF  125 (304)
Q Consensus        46 ~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  125 (304)
                      ....+...+++-.|.+.|+++.|+|....|++|+.|++|++||+.........               ..+....+|.++
T Consensus       158 ~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~---------------K~~qd~~~vrsi  222 (430)
T KOG0640|consen  158 TQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAF---------------KVFQDTEPVRSI  222 (430)
T ss_pred             cccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHH---------------HHhhccceeeeE
Confidence            33445567788899999999999999999999999999999998743221111               122334688888


Q ss_pred             eecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCC
Q 022019          126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP  204 (304)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~  204 (304)
                      .|       +|.|.++++|.+-..+++||+.+-++...-.  ....|...|+++.+++.+++.+++ .||.|++||--..
T Consensus       223 Sf-------HPsGefllvgTdHp~~rlYdv~T~Qcfvsan--Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~  293 (430)
T KOG0640|consen  223 SF-------HPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN--PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN  293 (430)
T ss_pred             ee-------cCCCceEEEecCCCceeEEeccceeEeeecC--cccccccceeEEEecCCccEEEEeccCCcEEeeccccH
Confidence            77       6689999999999999999999887755444  223567799999999999999965 9999999997542


Q ss_pred             Cccceeeeeeeccccccc-cceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec---------------------
Q 022019          205 GRDFEKYSTLKGNKEGQA-GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH---------------------  262 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------------  262 (304)
                       +   ++..+.   .+|. ..|.+..|.. +++++++.+.|..+++|.+.+++++..+.                     
T Consensus       294 -r---Cv~t~~---~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEd  365 (430)
T KOG0640|consen  294 -R---CVRTIG---NAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTED  365 (430)
T ss_pred             -H---HHHHHH---hhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccc
Confidence             2   222222   3333 4589999999 88899999999999999998876665432                     


Q ss_pred             ----------------------------cccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          263 ----------------------------GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       263 ----------------------------~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                                                  +|.+.+..+.-||.+.-+++++ .|-.+++|--+
T Consensus       366 yVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcs-dD~raRFWyrr  426 (430)
T KOG0640|consen  366 YVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCS-DDFRARFWYRR  426 (430)
T ss_pred             eEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeec-ccceeeeeeec
Confidence                                        4677788888888888888888 88899998654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.6e-25  Score=165.25  Aligned_cols=223  Identities=17%  Similarity=0.214  Sum_probs=171.0

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccc------------cc----ccccc-----cc-CC-c
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD------------VN----ACSLA-----KD-QD-S  109 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~------------~~----~~~~~-----~~-~~-~  109 (304)
                      +..+.||.+.|++|+|++.+.++++++.|++..||...-+-....            ..    .....     .+ +. .
T Consensus       183 L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR  262 (481)
T KOG0300|consen  183 LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR  262 (481)
T ss_pred             eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee
Confidence            347889999999999999999999999999999997321100000            00    00000     00 00 1


Q ss_pred             cceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE
Q 022019          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (304)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  189 (304)
                      ....-+.+|...|.+..|       -..|+.+++++.|.+..+||+++++.+..+.+|..     ..+.++-+|..++++
T Consensus       263 vPl~~ltgH~~vV~a~dW-------L~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~-----ELtHcstHptQrLVv  330 (481)
T KOG0300|consen  263 VPLMRLTGHRAVVSACDW-------LAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS-----ELTHCSTHPTQRLVV  330 (481)
T ss_pred             eeeeeeeccccceEehhh-------hcCcceeeeeeccccceeeeeccCceeccccCcch-----hccccccCCcceEEE
Confidence            111223456667777777       34788999999999999999999999999988876     788888999988888


Q ss_pred             EE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce-EeEEeccccCC
Q 022019          190 AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGG  267 (304)
Q Consensus       190 ~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~  267 (304)
                      ++ .|.+.++||++..       ......+.+|...|+++.|..++  .+++|+.|.+|++||+++.. ++.++. ..++
T Consensus       331 TsSrDtTFRLWDFRea-------I~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~  400 (481)
T KOG0300|consen  331 TSSRDTTFRLWDFREA-------IQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSP  400 (481)
T ss_pred             EeccCceeEeccchhh-------cceeeeecccccceeEEEEecCC--ceeecCCCceEEEeeeccccCcceeee-cCCc
Confidence            65 9999999999842       22333458999999999999733  68999999999999999865 778887 4678


Q ss_pred             eEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          268 VTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       268 v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      ++.++.+..++.|+.-- ++..|++||++..
T Consensus       401 ~NRvavs~g~~iIAiPh-DNRqvRlfDlnG~  430 (481)
T KOG0300|consen  401 ANRVAVSKGHPIIAIPH-DNRQVRLFDLNGN  430 (481)
T ss_pred             cceeEeecCCceEEecc-CCceEEEEecCCC
Confidence            99999998888999888 8899999999653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.7e-24  Score=151.02  Aligned_cols=223  Identities=20%  Similarity=0.312  Sum_probs=156.8

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      ....|.+++|.|.|.+.+.|+..++++|-....-...  ...+.....+......-...|...|++.+|       +|+|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~--r~~hea~~~pp~v~~kr~khhkgsiyc~~w-------s~~g  101 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL--RHAHEAAKQPPSVLCKRNKHHKGSIYCTAW-------SPCG  101 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCc--ccccccccCCCeEEeeeccccCccEEEEEe-------cCcc
Confidence            4567999999999999999999999998765321110  011111111122222334567789999999       8899


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeE-----Eeecccc------------------------------------------cc
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRC-----TYRAYDA------------------------------------------VD  171 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~------------------------------------------~~  171 (304)
                      +++++|+.|.+|++..++...+..     .+..|..                                          .+
T Consensus       102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg  181 (350)
T KOG0641|consen  102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG  181 (350)
T ss_pred             CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence            999999999999997665322111     1111111                                          01


Q ss_pred             cccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccc---cccceeEEEeecCCCcEEEEEecCCeE
Q 022019          172 EITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEG---QAGIMSAIAFSPTHTGMLAIGSYSQTS  247 (304)
Q Consensus       172 ~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~dg~i  247 (304)
                      |...|.++ ++-++-.+++| .|.+|++||++.+.    ....+...+.+   ....|.+++..| .+++|++|..|...
T Consensus       182 htghilal-yswn~~m~~sgsqdktirfwdlrv~~----~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc  255 (350)
T KOG0641|consen  182 HTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS----CVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSC  255 (350)
T ss_pred             CcccEEEE-EEecCcEEEccCCCceEEEEeeeccc----eeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCce
Confidence            12222222 12234566655 89999999998742    22222222221   236799999999 88999999999999


Q ss_pred             EEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          248 AIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       248 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      .+||++.+++++.+..|...|.++.|+|.-.|+++++ .|..|++-|+..
T Consensus       256 ~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s-yd~~ikltdlqg  304 (350)
T KOG0641|consen  256 MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS-YDMKIKLTDLQG  304 (350)
T ss_pred             EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec-ccceEEEeeccc
Confidence            9999999999999999999999999999999999999 999999999854

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=5.7e-26  Score=171.15  Aligned_cols=210  Identities=19%  Similarity=0.223  Sum_probs=153.2

Q ss_pred             eecCCCCceeEEEEcCCC-CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC----
Q 022019           55 TSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP----  129 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----  129 (304)
                      .+.||.+.|.|++=+|.. ..+++|+.||.|+|||+.+......+..+                 .+.|..+++.-    
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH-----------------~G~V~Gi~v~~~~~~  123 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAH-----------------EGLVRGICVTQTSFF  123 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecc-----------------cCceeeEEecccceE
Confidence            678999999999999966 78999999999999999876554333322                 23333333310    


Q ss_pred             ---------------------------ccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEEC
Q 022019          130 ---------------------------HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN  182 (304)
Q Consensus       130 ---------------------------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~  182 (304)
                                                 ..+.-+..+..+++++++  |.|||.....++..+.....     .+.++.|+
T Consensus       124 tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~D-----ti~svkfN  196 (433)
T KOG0268|consen  124 TVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGAD-----SISSVKFN  196 (433)
T ss_pred             EecCCcceeeeeccCCcceeeeccccccccccccccccccccCce--eeecccccCCccceeecCCC-----ceeEEecC
Confidence                                       001111223345555443  56666655555555554433     78899999


Q ss_pred             CCCcEEE-EE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce-EeE
Q 022019          183 PTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLY  259 (304)
Q Consensus       183 ~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~  259 (304)
                      |....|+ ++ .|+.|.+||++.....-+....         ..-..++|+| ....+++|++|..++.||++... ++.
T Consensus       197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~---------mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~  266 (433)
T KOG0268|consen  197 PVETSILASCASDRSIVLYDLRQASPLKKVILT---------MRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLN  266 (433)
T ss_pred             CCcchheeeeccCCceEEEecccCCccceeeee---------ccccceecCc-cccceeeccccccceehhhhhhcccch
Confidence            9776555 44 9999999999985332222211         2246799999 88899999999999999999764 788


Q ss_pred             EeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          260 VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       260 ~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      ...+|.+.|.++.|||.|+-+++|+ .|.+|+||.++.+.
T Consensus       267 v~~dhvsAV~dVdfsptG~Efvsgs-yDksIRIf~~~~~~  305 (433)
T KOG0268|consen  267 VHKDHVSAVMDVDFSPTGQEFVSGS-YDKSIRIFPVNHGH  305 (433)
T ss_pred             hhcccceeEEEeccCCCcchhcccc-ccceEEEeecCCCc
Confidence            8889999999999999999999999 99999999998764

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-24  Score=168.68  Aligned_cols=203  Identities=15%  Similarity=0.214  Sum_probs=161.6

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      -.++|.+++-+|+|.+|+.|+-.|.+.+|.+.++.+.....                 .|-.+|+++.|       +.||
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-----------------aHYQ~ITcL~f-------s~dg  135 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS-----------------AHYQSITCLKF-------SDDG  135 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-----------------hhccceeEEEE-------eCCC
Confidence            35779999999999999988899999999999987765443                 34488999987       8899


Q ss_pred             cEEEEEeCCCCEEEEEcCC---------CeeeEEeecccccccccceEEEEECCC--CcEEE-EEcCCeEEEEEcCCCCc
Q 022019          139 CVFASTTRDHPIHLWDATT---------GLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AGYNKSVRVFDVHRPGR  206 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~-~~~d~~i~v~d~~~~~~  206 (304)
                      .+|++|+.||.|.+|.+.+         -++...+..|.     -+|+++...+.  ..+++ ++.|.++++||+..+. 
T Consensus       136 s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht-----lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-  209 (476)
T KOG0646|consen  136 SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT-----LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-  209 (476)
T ss_pred             cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc-----ceeEEEEecCCCccceEEEecCCceEEEEEeccce-
Confidence            9999999999999998742         23334444443     48999988764  34555 6699999999998741 


Q ss_pred             cceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc----------------eEeEEeccccC--Ce
Q 022019          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM----------------ELLYVLHGQEG--GV  268 (304)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~----------------~~~~~~~~~~~--~v  268 (304)
                         .+..     ......+.+++.+| .+..+++|+.+|.|.+.++...                ..+..+.||.+  .|
T Consensus       210 ---LLlt-----i~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I  280 (476)
T KOG0646|consen  210 ---LLLT-----ITFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI  280 (476)
T ss_pred             ---eeEE-----EecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence               1111     12345689999999 8889999999999999876432                34556778988  99


Q ss_pred             EEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          269 THVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       269 ~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +|++.+-||..|++|+ .||.++|||+.+.+++
T Consensus       281 TcLais~DgtlLlSGd-~dg~VcvWdi~S~Q~i  312 (476)
T KOG0646|consen  281 TCLAISTDGTLLLSGD-EDGKVCVWDIYSKQCI  312 (476)
T ss_pred             eEEEEecCccEEEeeC-CCCCEEEEecchHHHH
Confidence            9999999999999999 9999999999887654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=7.2e-27  Score=173.99  Aligned_cols=164  Identities=18%  Similarity=0.280  Sum_probs=139.9

Q ss_pred             CccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccc---cccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCC
Q 022019          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA---VDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP  204 (304)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~  204 (304)
                      +.+..|+|||++|++|+.||.|-+||..+|+....++....   .-...+|.|+.|+.|...+++| .||.|++|.++++
T Consensus       216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG  295 (508)
T KOG0275|consen  216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG  295 (508)
T ss_pred             hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc
Confidence            34455699999999999999999999999887655443221   1123489999999999999977 9999999999885


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                             ..+.....+|...|+++.|+. ++..+++++.|.+++|.-+++|+++..++||.+.|+.+.|++||.++++++
T Consensus       296 -------~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS  367 (508)
T KOG0275|consen  296 -------QCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISAS  367 (508)
T ss_pred             -------hHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence                   222223357888999999999 666888999999999999999999999999999999999999999999999


Q ss_pred             ccCCeEEEEecccceee
Q 022019          285 RKDPYILCWDLRKAVQV  301 (304)
Q Consensus       285 ~~d~~i~vwd~~~~~~~  301 (304)
                       .||+|++|+..+++++
T Consensus       368 -sDgtvkvW~~KtteC~  383 (508)
T KOG0275|consen  368 -SDGTVKVWHGKTTECL  383 (508)
T ss_pred             -CCccEEEecCcchhhh
Confidence             9999999999998875

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.9e-24  Score=159.19  Aligned_cols=208  Identities=17%  Similarity=0.291  Sum_probs=164.5

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      ....|.++|.+++|+.||..+++|+.|+.+++||+.+++.                  .....|..+|..+.|.+.    
T Consensus        67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~------------------~~v~~Hd~pvkt~~wv~~----  124 (347)
T KOG0647|consen   67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV------------------SQVAAHDAPVKTCHWVPG----  124 (347)
T ss_pred             hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe------------------eeeeecccceeEEEEecC----
Confidence            4557999999999999999999999999999999986643                  244567789999999653    


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                       +....|++|+.|++|+.||.+...++.++..+.      .++++..-  ..+++++ .++.|.+|+++.+...++....
T Consensus       125 -~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe------RvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~S  195 (347)
T KOG0647|consen  125 -MNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE------RVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIES  195 (347)
T ss_pred             -CCcceeEecccccceeecccCCCCeeeeeeccc------eeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcC
Confidence             234589999999999999999999888888766      66776653  3466655 9999999999876544443322


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc--eEeEEeccccC---------CeEEEEECCCCcEEEE
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--ELLYVLHGQEG---------GVTHVQFSRDGNYLYT  282 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~---------~v~~~~~~~~~~~l~~  282 (304)
                      .      ..-.+++++..+ +....+.|+-+|.+.|..+..+  +.-++|+.|..         .|++++|+|....|+|
T Consensus       196 p------Lk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT  268 (347)
T KOG0647|consen  196 P------LKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT  268 (347)
T ss_pred             c------ccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence            2      233478999888 5556699999999999988876  45566666763         5888999999999999


Q ss_pred             eeccCCeEEEEecccceee
Q 022019          283 GGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       283 ~~~~d~~i~vwd~~~~~~~  301 (304)
                      +| .||+..+||-....++
T Consensus       269 aG-sDGtf~FWDkdar~kL  286 (347)
T KOG0647|consen  269 AG-SDGTFSFWDKDARTKL  286 (347)
T ss_pred             ec-CCceEEEecchhhhhh
Confidence            99 9999999998765444

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=6.6e-25  Score=170.37  Aligned_cols=235  Identities=17%  Similarity=0.198  Sum_probs=178.0

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      +++.|.+..+..+.      .+.+|-..|+|+.|+.||.+|+||+.||.|.+|.+.+-.-        ............
T Consensus       104 ~lYlWelssG~LL~------v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~--------a~~~~~~~p~~~  169 (476)
T KOG0646|consen  104 NLYLWELSSGILLN------VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS--------ADNDHSVKPLHI  169 (476)
T ss_pred             cEEEEEeccccHHH------HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc--------cccCCCccceee
Confidence            67888889888777      5678999999999999999999999999999999753211        011112233345


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  193 (304)
                      ...|.-+|+++...+     .+....+++++.|.++++||+..+..+.++..+.      .+.+++.+|.++.+++| .+
T Consensus       170 f~~HtlsITDl~ig~-----Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~------si~av~lDpae~~~yiGt~~  238 (476)
T KOG0646|consen  170 FSDHTLSITDLQIGS-----GGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS------SIKAVALDPAERVVYIGTEE  238 (476)
T ss_pred             eccCcceeEEEEecC-----CCccceEEEecCCceEEEEEeccceeeEEEecCC------cceeEEEcccccEEEecCCc
Confidence            667778888887633     3345689999999999999999999988887766      88999999999999987 99


Q ss_pred             CeEEEEEcCCCCcc--------ceeeeeeecccccccc--ceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc
Q 022019          194 KSVRVFDVHRPGRD--------FEKYSTLKGNKEGQAG--IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (304)
Q Consensus       194 ~~i~v~d~~~~~~~--------~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  263 (304)
                      |.|.+.++......        .....+-.....+|.+  .|+|++.+- ++.+|++|+.||.|.|||+.+.++++++..
T Consensus       239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~  317 (476)
T KOG0646|consen  239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQT  317 (476)
T ss_pred             ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence            99999988654311        1111222233466776  899999999 788999999999999999999999999886


Q ss_pred             ccCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       264 ~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      ..++|+.+.+.|--+-.+.+......+-.|++
T Consensus       318 ~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  318 SKGPVTNLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             hccccceeEeeccccceecccccCccCCchHh
Confidence            78899999997654433332213334444443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5e-24  Score=178.03  Aligned_cols=232  Identities=17%  Similarity=0.278  Sum_probs=167.2

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCC-Cccccc-cc-----------cccc-cCCccceEEEeecC---C
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG-ISYDVN-AC-----------SLAK-DQDSYEASLVVTEG---E  120 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~-~~-----------~~~~-~~~~~~~~~~~~~~---~  120 (304)
                      +|+..-+.|+|.|+|.+|++++.||.|++|+..... ....+. ..           .+.. .....+....+...   .
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~   90 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT   90 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc
Confidence            689999999999999999999999999999976552 211111 00           0000 00111111111111   1


Q ss_pred             eEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEE
Q 022019          121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVF  199 (304)
Q Consensus       121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~  199 (304)
                      -+..+....+.++++.+|+++|.|+.|-.|++-++.+......+..+..     +|.++.|+|.+++||++ .||.|++|
T Consensus        91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-----pVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-----PVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC-----ceeeeeEcCCCCEEEEEecCceEEEE
Confidence            1222333334456688999999999999999999999888888888776     99999999999999965 99999999


Q ss_pred             EcCCCCccceeeeeeecccccc-ccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc--ccCCeEEEEECCC
Q 022019          200 DVHRPGRDFEKYSTLKGNKEGQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--QEGGVTHVQFSRD  276 (304)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~  276 (304)
                      |+..... ...+..+....... ...+..++|+|+++ .+++.+.|+.|++|+..++.+...+..  +...+..+.|+|+
T Consensus       166 ~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn  243 (933)
T KOG1274|consen  166 DLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN  243 (933)
T ss_pred             Ecccchh-hhhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence            9986321 11111111111112 45577899999555 566677789999999999999888863  3445999999999


Q ss_pred             CcEEEEeeccCCeEEEEeccc
Q 022019          277 GNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       277 ~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      |+|||+++ .||.|.|||+.+
T Consensus       244 G~YiAAs~-~~g~I~vWnv~t  263 (933)
T KOG1274|consen  244 GKYIAAST-LDGQILVWNVDT  263 (933)
T ss_pred             CcEEeeec-cCCcEEEEeccc
Confidence            99999999 999999999985

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.7e-25  Score=183.66  Aligned_cols=205  Identities=17%  Similarity=0.266  Sum_probs=172.2

Q ss_pred             ecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC
Q 022019           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (304)
                      +...+..|.+++|+|...+++++-..|.|++||.+-+.+...                 ...|.++|..+.|       +
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~r-----------------FdeHdGpVRgv~F-------H   60 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR-----------------FDEHDGPVRGVDF-------H   60 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhh-----------------hhccCCccceeee-------c
Confidence            445567899999999999999999999999999875544332                 2346689999988       5


Q ss_pred             CCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCccceeeeee
Q 022019          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       136 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      |.+.+|++|++|-.|++|+..+.+++.++.+|..     .|..+.|++.-..|++ +.|.+|+||+..+        ...
T Consensus        61 ~~qplFVSGGDDykIkVWnYk~rrclftL~GHlD-----YVRt~~FHheyPWIlSASDDQTIrIWNwqs--------r~~  127 (1202)
T KOG0292|consen   61 PTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD-----YVRTVFFHHEYPWILSASDDQTIRIWNWQS--------RKC  127 (1202)
T ss_pred             CCCCeEEecCCccEEEEEecccceehhhhccccc-----eeEEeeccCCCceEEEccCCCeEEEEeccC--------Cce
Confidence            5677999999999999999999999888887776     8999999999999995 5999999999987        233


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce-----------------------------EeEEecccc
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-----------------------------LLYVLHGQE  265 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~  265 (304)
                      .....+|...|.|..|+| ...+++++|-|.+|++||+...+                             ..+.+.||.
T Consensus       128 iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD  206 (1202)
T KOG0292|consen  128 IAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD  206 (1202)
T ss_pred             EEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc
Confidence            333488999999999999 77899999999999999984210                             123457899


Q ss_pred             CCeEEEEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       266 ~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      ..|+-++|+|.-..|++|+ +|..|++|.+...+
T Consensus       207 RGVNwaAfhpTlpliVSG~-DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  207 RGVNWAAFHPTLPLIVSGA-DDRQVKLWRMNETK  239 (1202)
T ss_pred             cccceEEecCCcceEEecC-CcceeeEEEecccc
Confidence            9999999999999999999 99999999987654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.6e-25  Score=159.16  Aligned_cols=214  Identities=18%  Similarity=0.270  Sum_probs=166.6

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .-..|++.|.++...--|++||||+.|++|+|+.+.++..              ......+.+|..+|..+.|..     
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------------s~ll~~L~Gh~GPVwqv~wah-----   66 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------------SKLLAELTGHSGPVWKVAWAH-----   66 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------------ceeeeEecCCCCCeeEEeecc-----
Confidence            4568999999999988999999999999999999885532              123335667889999999932     


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCC--cEEEEE-cCCeEEEEEcCCCCccceee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                      -.-|.+|++++.||.|.||.-..++..+...   ...|...|++++|.|.+  -.|+++ .||.|.|++.+..+.     
T Consensus        67 Pk~G~iLAScsYDgkVIiWke~~g~w~k~~e---~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~-----  138 (299)
T KOG1332|consen   67 PKFGTILASCSYDGKVIIWKEENGRWTKAYE---HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-----  138 (299)
T ss_pred             cccCcEeeEeecCceEEEEecCCCchhhhhh---hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC-----
Confidence            2268899999999999999987774332221   12344589999999964  556655 999999999987421     


Q ss_pred             eeeeccccccccceeEEEeecCC--C-----------cEEEEEecCCeEEEEecCCce--EeEEeccccCCeEEEEECCC
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTH--T-----------GMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRD  276 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~--~-----------~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~  276 (304)
                      .........|.-.+++++|.|..  +           +.|++|+.|..|+||+..+++  ...++.+|.+.|+.++|.|.
T Consensus       139 w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~  218 (299)
T KOG1332|consen  139 WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS  218 (299)
T ss_pred             ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc
Confidence            12222236788889999999931  2           469999999999999988753  45568899999999999996


Q ss_pred             C----cEEEEeeccCCeEEEEecc
Q 022019          277 G----NYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       277 ~----~~l~~~~~~d~~i~vwd~~  296 (304)
                      -    .+|++++ .||++.||-.+
T Consensus       219 ~gl~~s~iAS~S-qDg~viIwt~~  241 (299)
T KOG1332|consen  219 VGLPKSTIASCS-QDGTVIIWTKD  241 (299)
T ss_pred             cCCCceeeEEec-CCCcEEEEEec
Confidence            4    5799999 99999999876

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=2.1e-26  Score=187.52  Aligned_cols=209  Identities=18%  Similarity=0.305  Sum_probs=178.6

Q ss_pred             eeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      +....|...|.++..-..++.+++|+.|..+.+|.+......                 .-+..|..+|.++.|      
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i-----------------~S~~~hespIeSl~f------   78 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI-----------------TSLTGHESPIESLTF------   78 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh-----------------heeeccCCcceeeec------
Confidence            345578899999998778899999999999999987632211                 124567788988887      


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeee
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~  212 (304)
                       ++...+|++|+.+|+|++||+..++.+.++.++..     .+.++.|+|-+.+.+.| .|+.+++||++..+       
T Consensus        79 -~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~-----~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-------  145 (825)
T KOG0267|consen   79 -DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLL-----NITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-------  145 (825)
T ss_pred             -CcchhhhcccccCCceeeeehhhhhhhhhhhcccc-----CcceeeeccceEEeccccccccceehhhhccC-------
Confidence             66788999999999999999999998888887765     88899999999999966 99999999998632       


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                       +.....+|...+..+.|+| ++.+++.|++|..++|||+..++.+..|+.|.+.+.++.|+|..-.+++|+ .|+++++
T Consensus       146 -c~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs-~d~tv~f  222 (825)
T KOG0267|consen  146 -CSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS-SDRTVRF  222 (825)
T ss_pred             -ceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC-CCceeee
Confidence             2222356888899999999 888999999999999999999999999999999999999999999999999 9999999


Q ss_pred             Eecccceee
Q 022019          293 WDLRKAVQV  301 (304)
Q Consensus       293 wd~~~~~~~  301 (304)
                      ||+++.+.+
T Consensus       223 ~dletfe~I  231 (825)
T KOG0267|consen  223 WDLETFEVI  231 (825)
T ss_pred             eccceeEEe
Confidence            999976554

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.7e-24  Score=167.76  Aligned_cols=201  Identities=13%  Similarity=0.172  Sum_probs=165.1

Q ss_pred             cCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC
Q 022019           57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (304)
Q Consensus        57 ~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (304)
                      ++|.+.|.+++.++||+|||+|+.|..|.||+..+.+....                 ...|...|.+++|.       .
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~-----------------~~ghr~~V~~L~fr-------~  254 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV-----------------FKGHRGAVSSLAFR-------K  254 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhc-----------------ccccccceeeeeee-------c
Confidence            48999999999999999999999999999999987654332                 34566889999884       3


Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeee
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      ....+++++.|++|++|++.....+.++-.|..     .|.+|....-++.+.+| .|+++++|++....         .
T Consensus       255 gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-----~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---------q  320 (479)
T KOG0299|consen  255 GTSELYSASADRSVKVWSIDQLSYVETLYGHQD-----GVLGIDALSRERCVTVGGRDRTVRLWKIPEES---------Q  320 (479)
T ss_pred             CccceeeeecCCceEEEehhHhHHHHHHhCCcc-----ceeeechhcccceEEeccccceeEEEeccccc---------e
Confidence            445799999999999999987777666665554     88899888878888877 99999999994321         1


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-cc-----------cCCeEEEEECCCCcEEEEe
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQ-----------EGGVTHVQFSRDGNYLYTG  283 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~-----------~~~v~~~~~~~~~~~l~~~  283 (304)
                      ..+.++.+.+.|++|-.  ...+++|+.||.|.+|++...+++++.. .|           ..+|++++..|...++++|
T Consensus       321 lifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asG  398 (479)
T KOG0299|consen  321 LIFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASG  398 (479)
T ss_pred             eeeeCCCCCeeeEEEec--ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEec
Confidence            11256677899999986  3478999999999999999999888764 22           1289999999999999999


Q ss_pred             eccCCeEEEEecccc
Q 022019          284 GRKDPYILCWDLRKA  298 (304)
Q Consensus       284 ~~~d~~i~vwd~~~~  298 (304)
                      + .+|+|++|.+.++
T Consensus       399 S-~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  399 S-WSGCVRLWKIEDG  412 (479)
T ss_pred             C-CCCceEEEEecCC
Confidence            9 9999999999988

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.93  E-value=7.6e-24  Score=176.53  Aligned_cols=213  Identities=15%  Similarity=0.294  Sum_probs=171.8

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      +..|+...+....      .+.+|.+.|.++...  ..++++|+.|.+|++|++.++...                 .+.
T Consensus       273 ~rvWd~~sg~C~~------~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l-----------------~l~  327 (537)
T KOG0274|consen  273 ERVWDCSTGECTH------SLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACL-----------------NLL  327 (537)
T ss_pred             EEeEecCCCcEEE------EecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceE-----------------EEe
Confidence            4455555555444      788999999999885  457888999999999999855432                 133


Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCC
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNK  194 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~  194 (304)
                      .+|..+|.++..         ++.++++|+.|++|++||+.+++++.++..|..     .|+++.+.+. ..++. +.|+
T Consensus       328 ~~h~~~V~~v~~---------~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-----~V~sl~~~~~-~~~~Sgs~D~  392 (537)
T KOG0274|consen  328 RGHTGPVNCVQL---------DEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-----RVYSLIVDSE-NRLLSGSLDT  392 (537)
T ss_pred             ccccccEEEEEe---------cCCEEEEEecCceEEEEEhhhceeeeeecCCcc-----eEEEEEecCc-ceEEeeeecc
Confidence            337789999977         577999999999999999999999999998776     9999988876 66665 5999


Q ss_pred             eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc-ccCCeEEEEE
Q 022019          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQF  273 (304)
Q Consensus       195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~  273 (304)
                      +|++||++...       .......+|...+..+.+.   +.+|++++.|+.|++||...++++..+.+ |...|+.+++
T Consensus       393 ~IkvWdl~~~~-------~c~~tl~~h~~~v~~l~~~---~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~  462 (537)
T KOG0274|consen  393 TIKVWDLRTKR-------KCIHTLQGHTSLVSSLLLR---DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALAL  462 (537)
T ss_pred             ceEeecCCchh-------hhhhhhcCCcccccccccc---cceeEeccccccEEEeecccCceeeeeccCCcccEEEeec
Confidence            99999998742       3333446777777666553   45899999999999999999999999998 6788999998


Q ss_pred             CCCCcEEEEeeccCCeEEEEecccceee
Q 022019          274 SRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       274 ~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      .  ...+++++ .||.+.+||+++++.+
T Consensus       463 ~--~~~il~s~-~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  463 G--KEEILCSS-DDGSVKLWDLRSGTLI  487 (537)
T ss_pred             C--cceEEEEe-cCCeeEEEecccCchh
Confidence            6  45677788 8999999999998754

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=3.9e-24  Score=165.84  Aligned_cols=225  Identities=17%  Similarity=0.283  Sum_probs=175.1

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccc-cccccccc-cCCccceEEEeecCCeEEEEeecCc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD-VNACSLAK-DQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      +.....|.-+|.+++++|++++.++++.||+|.=|++.++..... ........ ........- ..|...+.+++.   
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~av---  210 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAV---  210 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEE---
Confidence            446778999999999999999999999999999999988774411 11110000 000000000 245566666654   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCccce
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~  209 (304)
                          ++||++|++|+.|..|.||+.++.+.+..+..|..     .|.+++|-.....++ ++.|+.|++|++..      
T Consensus       211 ----S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~-----~V~~L~fr~gt~~lys~s~Drsvkvw~~~~------  275 (479)
T KOG0299|consen  211 ----SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG-----AVSSLAFRKGTSELYSASADRSVKVWSIDQ------  275 (479)
T ss_pred             ----cCCCcEEEecCCCceEEEecCcccchhhccccccc-----ceeeeeeecCccceeeeecCCceEEEehhH------
Confidence                89999999999999999999999999988887776     999999987666666 66999999999976      


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCe
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY  289 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~  289 (304)
                        ........+|.+.|.++.-.. -++.+.+|+.|+++++|++.. +....+.+|.+.+-+++|-. ...+++|+ ++|.
T Consensus       276 --~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGS-dnG~  349 (479)
T KOG0299|consen  276 --LSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGS-DNGS  349 (479)
T ss_pred             --hHHHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeecc-CCce
Confidence              334445588999999998877 677777788999999999943 44456778899999999974 45789999 9999


Q ss_pred             EEEEecccceeee
Q 022019          290 ILCWDLRKAVQVV  302 (304)
Q Consensus       290 i~vwd~~~~~~~~  302 (304)
                      |.+|++.+.+.++
T Consensus       350 IaLWs~~KKkplf  362 (479)
T KOG0299|consen  350 IALWSLLKKKPLF  362 (479)
T ss_pred             EEEeeecccCcee
Confidence            9999999887764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.1e-24  Score=178.90  Aligned_cols=225  Identities=15%  Similarity=0.222  Sum_probs=169.2

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (304)
                      .+..||+.....-   +.+..+..|...|++++|++ ...+|++|+.||+|++||++...-..                 
T Consensus       111 ~i~vWdlnk~~rn---k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~-----------------  170 (839)
T KOG0269|consen  111 VISVWDLNKSIRN---KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS-----------------  170 (839)
T ss_pred             cEEEEecCccccc---hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc-----------------
Confidence            3445665542111   22346788999999999998 66789999999999999998553322                 


Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCC-eeeEEeecccccccccceEEEEECCCCcEEEEE-
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-  191 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-  191 (304)
                      ........|.++.|.|.      .+..|+++.+.|.+.+||++.. ++...+..|.+     +|.++.|+|++.+||+| 
T Consensus       171 t~~~nSESiRDV~fsp~------~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-----pV~c~nwhPnr~~lATGG  239 (839)
T KOG0269|consen  171 TFRSNSESIRDVKFSPG------YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-----PVLCLNWHPNREWLATGG  239 (839)
T ss_pred             cccccchhhhceeeccC------CCceEEEecCCceEEEeeccCchhHHHHhhcccC-----ceEEEeecCCCceeeecC
Confidence            22334578999999886      4778999999999999999864 34444555544     99999999999999966 


Q ss_pred             cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec--CCeEEEEecCCce-EeEEeccccCCe
Q 022019          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--SQTSAIYREDNME-LLYVLHGQEGGV  268 (304)
Q Consensus       192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~i~i~d~~~~~-~~~~~~~~~~~v  268 (304)
                      .|+.|+|||+..+..  ....++     ....++..++|-|.....|++++.  |-.|+|||++..- |-.++..|...+
T Consensus       240 RDK~vkiWd~t~~~~--~~~~tI-----nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~v  312 (839)
T KOG0269|consen  240 RDKMVKIWDMTDSRA--KPKHTI-----NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSV  312 (839)
T ss_pred             CCccEEEEeccCCCc--cceeEE-----eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccc
Confidence            999999999975321  111221     234569999999988888888875  6789999997654 677888999999


Q ss_pred             EEEEECC-CCcEEEEeeccCCeEEEEecccc
Q 022019          269 THVQFSR-DGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       269 ~~~~~~~-~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      +.++|.. |-..|.+++ .||+|..-.++++
T Consensus       313 t~i~W~~~d~~~l~s~s-KD~tv~qh~~kna  342 (839)
T KOG0269|consen  313 TGIAWDSGDRINLWSCS-KDGTVLQHLFKNA  342 (839)
T ss_pred             cceeccCCCceeeEeec-CccHHHHhhhhcc
Confidence            9999965 445688888 9998876555443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=1.6e-23  Score=178.07  Aligned_cols=217  Identities=18%  Similarity=0.278  Sum_probs=164.3

Q ss_pred             CCCCceeEEEEcCCCCeEEEec--CCCeEEEeeCCCCCCccccccccccccC-CccceEEEeecCCeEEEEeecCcccee
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSS--EDKTLRIFSLPENGISYDVNACSLAKDQ-DSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+...|.+|+.+|+|..++||+  .||.++||+.+.-......      ... ..........|...|.++.|       
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~------~~~~l~k~l~~m~~h~~sv~CVR~-------   77 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEE------KNENLPKHLCTMDDHDGSVNCVRF-------   77 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhh------hhcccchhheeeccccCceeEEEE-------
Confidence            3456799999999999999999  8999999997532110000      001 12334456678899999998       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCC-------C-----------eeeEEeecccccccccceEEEEECCCCcEEEE-EcCCe
Q 022019          135 DPTSCVFASTTRDHPIHLWDATT-------G-----------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKS  195 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~-------~-----------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~  195 (304)
                      +|||++||+|++|+.|.+|....       +           +....+..|     ...|..+.|+|++.++++ |.|++
T Consensus        78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H-----~~DV~Dv~Wsp~~~~lvS~s~Dns  152 (942)
T KOG0973|consen   78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH-----DSDVLDVNWSPDDSLLVSVSLDNS  152 (942)
T ss_pred             CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecC-----CCccceeccCCCccEEEEecccce
Confidence            88999999999999999999772       0           133344444     449999999999999995 59999


Q ss_pred             EEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE------------------
Q 022019          196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL------------------  257 (304)
Q Consensus       196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~------------------  257 (304)
                      |.+|+.++.        .......+|.+.|..+.|+| -+++|++-+.|++|+||++.+...                  
T Consensus       153 Viiwn~~tF--------~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~  223 (942)
T KOG0973|consen  153 VIIWNAKTF--------ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL  223 (942)
T ss_pred             EEEEccccc--------eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence            999999763        33333488999999999999 888999999999999998644211                  


Q ss_pred             ----------------------------------eEEeccccCCeEEEEECCC--------C-----c----EEEEeecc
Q 022019          258 ----------------------------------LYVLHGQEGGVTHVQFSRD--------G-----N----YLYTGGRK  286 (304)
Q Consensus       258 ----------------------------------~~~~~~~~~~v~~~~~~~~--------~-----~----~l~~~~~~  286 (304)
                                                        -..|-||..++.++.|+|.        |     .    .+|+|+ .
T Consensus       224 RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS-q  302 (942)
T KOG0973|consen  224 RLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS-Q  302 (942)
T ss_pred             ecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec-C
Confidence                                              1224578889999999872        1     1    466677 9


Q ss_pred             CCeEEEEecccceeee
Q 022019          287 DPYILCWDLRKAVQVV  302 (304)
Q Consensus       287 d~~i~vwd~~~~~~~~  302 (304)
                      |++|.||.....+.++
T Consensus       303 DrSlSVW~T~~~RPl~  318 (942)
T KOG0973|consen  303 DRSLSVWNTALPRPLF  318 (942)
T ss_pred             CccEEEEecCCCCchh
Confidence            9999999997776654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=4e-23  Score=152.71  Aligned_cols=222  Identities=19%  Similarity=0.340  Sum_probs=158.5

Q ss_pred             cCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccc------cccccc-------cCCc---------cceEE
Q 022019           57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVN------ACSLAK-------DQDS---------YEASL  114 (304)
Q Consensus        57 ~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~------~~~~~~-------~~~~---------~~~~~  114 (304)
                      ....+.|++|.|+|.++.|+.+++||++++||+....+.....      .+.+..       .-+.         .....
T Consensus        10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~   89 (323)
T KOG1036|consen   10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQ   89 (323)
T ss_pred             CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCccee
Confidence            3567889999999988888889999999999998764422211      111111       1111         11123


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcC
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN  193 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d  193 (304)
                      ...|...+.++.+       .+....+++|+.|++|++||.+.......+....      .|.++...  +..|++ +.+
T Consensus        90 igth~~~i~ci~~-------~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k------kVy~~~v~--g~~LvVg~~~  154 (323)
T KOG1036|consen   90 IGTHDEGIRCIEY-------SYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK------KVYCMDVS--GNRLVVGTSD  154 (323)
T ss_pred             eccCCCceEEEEe-------eccCCeEEEcccCccEEEEeccccccccccccCc------eEEEEecc--CCEEEEeecC
Confidence            3456667777777       4456679999999999999998754444443322      78888765  556665 599


Q ss_pred             CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc----eEeEEeccccC---
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM----ELLYVLHGQEG---  266 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~---  266 (304)
                      ..|.+||++.....+.      .........++++++-| ++.=+++++-||.|.+=.++..    +.-..|+.|..   
T Consensus       155 r~v~iyDLRn~~~~~q------~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~  227 (323)
T KOG1036|consen  155 RKVLIYDLRNLDEPFQ------RRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK  227 (323)
T ss_pred             ceEEEEEcccccchhh------hccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC
Confidence            9999999997543331      11133455689999999 6667888999999887655544    34556666643   


Q ss_pred             ------CeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          267 ------GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       267 ------~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                            +|++++|+|-...|+||| .||.|.+||+.+.+.+
T Consensus       228 ~~~~~yPVNai~Fhp~~~tfaTgG-sDG~V~~Wd~~~rKrl  267 (323)
T KOG1036|consen  228 DTEIIYPVNAIAFHPIHGTFATGG-SDGIVNIWDLFNRKRL  267 (323)
T ss_pred             CceEEEEeceeEeccccceEEecC-CCceEEEccCcchhhh
Confidence                  799999999999999999 9999999999988765

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=6.9e-24  Score=164.43  Aligned_cols=215  Identities=15%  Similarity=0.211  Sum_probs=165.4

Q ss_pred             eeeeecCCCCceeEEEEcCCC--CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC
Q 022019           52 QFRTSSIPNNFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (304)
Q Consensus        52 ~~~~~~~h~~~V~~i~~s~~~--~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (304)
                      .....+.|.++|++++|+|..  +.+|+|..-|.|-+||+.+.+.             +.....+...|..+|.++.|.|
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-------------d~d~v~~f~~hs~~Vs~l~F~P  244 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-------------DKDGVYLFTPHSGPVSGLKFSP  244 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-------------ccCceEEeccCCccccceEecC
Confidence            334667889999999999943  5788899999999999963321             2222235567788999999977


Q ss_pred             ccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCccc
Q 022019          130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~  208 (304)
                      .      +-..+++.+.||+|++-|++.+.....+....   ....+.++.|+.+...++. ..=|...+||+++++...
T Consensus       245 ~------n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~---d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~  315 (498)
T KOG4328|consen  245 A------NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDT---DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY  315 (498)
T ss_pred             C------ChhheeeeccCceeeeeeecchhhHHHhhcCc---cceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence            6      44579999999999999998765443333311   1126778899887766664 466799999999976544


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce----EeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME----LLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      ..+       .-|...|++++++|....+|++++.|++.+|||++...    ++...-.|...|.++.|||+|..|+|.+
T Consensus       316 ~~~-------~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~  388 (498)
T KOG4328|consen  316 ENL-------RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC  388 (498)
T ss_pred             hhh-------hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec
Confidence            333       34556799999999889999999999999999998643    2233346999999999999998899999


Q ss_pred             ccCCeEEEEecc
Q 022019          285 RKDPYILCWDLR  296 (304)
Q Consensus       285 ~~d~~i~vwd~~  296 (304)
                       .|..|+|||..
T Consensus       389 -~D~~IRv~dss  399 (498)
T KOG4328|consen  389 -QDNEIRVFDSS  399 (498)
T ss_pred             -cCCceEEeecc
Confidence             99999999984

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=3.8e-25  Score=180.27  Aligned_cols=192  Identities=18%  Similarity=0.341  Sum_probs=163.9

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+.+|..+|.++.|+++..+|++|+.+|+|++||+.+.+....                 +..|...+..+.|       
T Consensus        65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt-----------------Ltgh~~~~~sv~f-------  120 (825)
T KOG0267|consen   65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT-----------------LTGHLLNITSVDF-------  120 (825)
T ss_pred             eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhh-----------------hhccccCcceeee-------
Confidence            4789999999999999999999999999999999986654332                 2334456666666       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      +|-+.++++|+.|..+.+||.+..-+...+..+..     .|..+.|+|+|++++.+ .|..++|||+..        ..
T Consensus       121 ~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~-----vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a--------gk  187 (825)
T KOG0267|consen  121 HPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR-----VVDVLRLSPDGRWVASGGEDNTVKIWDLTA--------GK  187 (825)
T ss_pred             ccceEEeccccccccceehhhhccCceeeecCCcc-----eeEEEeecCCCceeeccCCcceeeeecccc--------cc
Confidence            66788999999999999999997777777776543     78899999999999966 789999999976        34


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      +...+..|.+.+.++.|+| ...+++.|+.|+++++||+++.+.+.........|.+..|+|++..+++|.
T Consensus       188 ~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  188 LSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE  257 (825)
T ss_pred             cccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence            4444577889999999999 788999999999999999999999988888888999999999999988876

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=6.9e-24  Score=163.82  Aligned_cols=255  Identities=14%  Similarity=0.262  Sum_probs=177.3

Q ss_pred             hhhcHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcC-------CCCeEEEecCCCeEEEeeCCC
Q 022019           19 TEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-------DGSSFLTSSEDKTLRIFSLPE   91 (304)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-------~~~~l~s~~~dg~v~vwd~~~   91 (304)
                      ..++..+..........++.++......|..+..  .+   ...-.|++|..       .|+|+|.|+.|..|-|||+.-
T Consensus       137 DnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~--il---pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI  211 (463)
T KOG0270|consen  137 DNLILCARNEDDVSYLEVYVYNEEEENLYVHHDF--IL---PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDI  211 (463)
T ss_pred             CcEEEEeeccCCceEEEEEEEcCCCcceeEecce--ec---cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEecccc
Confidence            3344444555555555677777665444432111  11   12235666642       367999999999999999873


Q ss_pred             CCCccccccccccccC----CccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecc
Q 022019           92 NGISYDVNACSLAKDQ----DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY  167 (304)
Q Consensus        92 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  167 (304)
                      ...............+    .........+|...|..+.|+-.      ..+.||+|+.|.+|++||+.++++..++..+
T Consensus       212 ~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~------~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~  285 (463)
T KOG0270|consen  212 VDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN------FRNVLASGSADKTVKLWDVDTGKPKSSITHH  285 (463)
T ss_pred             ccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc------cceeEEecCCCceEEEEEcCCCCcceehhhc
Confidence            3221111111100000    00111122346666777777432      3468999999999999999999999999876


Q ss_pred             cccccccceEEEEECCCC-cEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC
Q 022019          168 DAVDEITAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ  245 (304)
Q Consensus       168 ~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  245 (304)
                      ..     .|.++.|+|.. .+|++| .|++|.+.|.|..+.....+.        ..+.|..++|+|.....+++++.||
T Consensus       286 ~k-----~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--------~~g~VEkv~w~~~se~~f~~~tddG  352 (463)
T KOG0270|consen  286 GK-----KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--------FDGEVEKVAWDPHSENSFFVSTDDG  352 (463)
T ss_pred             CC-----ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--------eccceEEEEecCCCceeEEEecCCc
Confidence            65     99999999965 555566 999999999996433333222        2355889999998888999999999


Q ss_pred             eEEEEecCCc-eEeEEeccccCCeEEEEECCCCc-EEEEeeccCCeEEEEecccc
Q 022019          246 TSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       246 ~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~d~~i~vwd~~~~  298 (304)
                      +|+-+|+|+. +++.+++.|.++|.++++++.-+ +|++++ .|+.|++|++...
T Consensus       353 ~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s-~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  353 TVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS-TDKVVKLWKFDVD  406 (463)
T ss_pred             eEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc-ccceEEEEeecCC
Confidence            9999999975 89999999999999999988765 466666 9999999998653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=3.3e-23  Score=168.32  Aligned_cols=197  Identities=17%  Similarity=0.294  Sum_probs=161.0

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      +..+++|...|+|+....++. +++||.|.++++|.......                   ...+|...|+.+...|   
T Consensus        94 ~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~-------------------~l~gH~asVWAv~~l~---  150 (745)
T KOG0301|consen   94 LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY-------------------SLQGHTASVWAVASLP---  150 (745)
T ss_pred             hhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhc-------------------ccCCcchheeeeeecC---
Confidence            448899999999999988887 99999999999997653221                   2456778888887644   


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~  212 (304)
                          ++ .+++|+.|.+|++|.-  ++...++..|..     .|.++++-+++.++.++.||.|++|++..  ..+    
T Consensus       151 ----e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD-----~VRgL~vl~~~~flScsNDg~Ir~w~~~g--e~l----  212 (745)
T KOG0301|consen  151 ----EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTD-----CVRGLAVLDDSHFLSCSNDGSIRLWDLDG--EVL----  212 (745)
T ss_pred             ----CC-cEEeccCcceeeeccC--Cchhhhhccchh-----heeeeEEecCCCeEeecCCceEEEEeccC--cee----
Confidence                33 8999999999999974  777888887765     99999999998999899999999999943  111    


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                         ....+|...++++...+ +...++++++|++++||+..  ++.+.+.-....|+++.+-++|. |++|+ .||.|+|
T Consensus       213 ---~~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~-SDG~VrV  284 (745)
T KOG0301|consen  213 ---LEMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGG-SDGRVRV  284 (745)
T ss_pred             ---eeeeccceEEEEEEecC-CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEec-cCceEEE
Confidence               22278999999999777 56699999999999999976  77777775556899999998988 66677 7999999


Q ss_pred             Eecccc
Q 022019          293 WDLRKA  298 (304)
Q Consensus       293 wd~~~~  298 (304)
                      |-.+..
T Consensus       285 fT~~k~  290 (745)
T KOG0301|consen  285 FTVDKD  290 (745)
T ss_pred             EEeccc
Confidence            988643

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.2e-23  Score=161.07  Aligned_cols=209  Identities=18%  Similarity=0.303  Sum_probs=159.9

Q ss_pred             ecCCCCceeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           56 SSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      ..+|++.|..+.|+.. .+.||+||.|.+|++||+.+++...                 ....|+..|.++.|+|.    
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~-----------------s~~~~~k~Vq~l~wh~~----  297 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS-----------------SITHHGKKVQTLEWHPY----  297 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce-----------------ehhhcCCceeEEEecCC----
Confidence            4579999999999985 4589999999999999999765422                 33457799999999876    


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCC-eeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                        ....|++|+.|++|.+.|++.. ..-..++..+      .|..++|+|.....+ ++ .||+++-+|+|..+.+... 
T Consensus       298 --~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g------~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt-  368 (463)
T KOG0270|consen  298 --EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDG------EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT-  368 (463)
T ss_pred             --CceEEEeccccceEEeeeccCccccCceEEecc------ceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE-
Confidence              5568999999999999999942 2223344433      788999999765544 66 9999999999987643322 


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec--cccCCeEEEEECCCCcE-EEEeeccCC
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNY-LYTGGRKDP  288 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~-l~~~~~~d~  288 (304)
                            ..+|.++|.++++++....++++++.|+.|++|++....+-....  -.-+...|.++.|+-.+ ++.|| ..+
T Consensus       369 ------~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG-~k~  441 (463)
T KOG0270|consen  369 ------LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG-EKA  441 (463)
T ss_pred             ------EEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecC-ccc
Confidence                  278999999999999888899999999999999987544322111  11234677888887765 55566 788


Q ss_pred             eEEEEecccceee
Q 022019          289 YILCWDLRKAVQV  301 (304)
Q Consensus       289 ~i~vwd~~~~~~~  301 (304)
                      .++|||+.+...+
T Consensus       442 ~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  442 VLRVWDIFTNSPV  454 (463)
T ss_pred             eEEEeecccChhH
Confidence            9999999876543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=1.9e-23  Score=158.34  Aligned_cols=216  Identities=16%  Similarity=0.246  Sum_probs=159.6

Q ss_pred             ccceeeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEee
Q 022019           49 FYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW  127 (304)
Q Consensus        49 ~~~~~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  127 (304)
                      ..+++.++.+|.+.=.+|+||| ....|+||.--+.|++|...++.......              -...|...|-+++|
T Consensus       200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~--------------Pf~gH~~SVEDLqW  265 (440)
T KOG0302|consen  200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR--------------PFTGHTKSVEDLQW  265 (440)
T ss_pred             ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCc--------------cccccccchhhhcc
Confidence            3467778999999999999999 33368888888899999988765432211              23347789999999


Q ss_pred             cCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCc
Q 022019          128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGR  206 (304)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~  206 (304)
                      +|+      ....|++|+-||+|+|||++.+.....+..   ..|...|+.|.|+....+|++| .||+++|||+|.-..
T Consensus       266 Spt------E~~vfaScS~DgsIrIWDiRs~~~~~~~~~---kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~  336 (440)
T KOG0302|consen  266 SPT------EDGVFASCSCDGSIRIWDIRSGPKKAAVST---KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS  336 (440)
T ss_pred             CCc------cCceEEeeecCceEEEEEecCCCccceeEe---eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC
Confidence            775      456899999999999999998843332222   1233489999999988888876 999999999987422


Q ss_pred             cceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce----------------EeEEeccc--cCCe
Q 022019          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME----------------LLYVLHGQ--EGGV  268 (304)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~--~~~v  268 (304)
                           ..+...+.-|..+|+++.|+|.....|++++.|..|.|||+....                +.+.+-.|  ...+
T Consensus       337 -----~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~  411 (440)
T KOG0302|consen  337 -----GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEV  411 (440)
T ss_pred             -----CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHh
Confidence                 233334477899999999999888899999999999999985211                11122234  3468


Q ss_pred             EEEEECCCC-cEEEEeeccCCeEEEEe
Q 022019          269 THVQFSRDG-NYLYTGGRKDPYILCWD  294 (304)
Q Consensus       269 ~~~~~~~~~-~~l~~~~~~d~~i~vwd  294 (304)
                      ..+.|++.- .+|++.+ .|| +.||.
T Consensus       412 KevhWH~QiPG~lvsTa-~dG-fnVfk  436 (440)
T KOG0302|consen  412 KEVHWHRQIPGLLVSTA-IDG-FNVFK  436 (440)
T ss_pred             hhheeccCCCCeEEEec-ccc-eeEEE
Confidence            889999864 3566666 788 44553

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=3.1e-23  Score=166.02  Aligned_cols=239  Identities=17%  Similarity=0.288  Sum_probs=166.4

Q ss_pred             cCCCccccccc--ceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccc-----------------
Q 022019           40 DVPPHRTYHFY--NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA-----------------  100 (304)
Q Consensus        40 ~~~~~~~~~~~--~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-----------------  100 (304)
                      +++....+.++  .....+.||.+.|.+|...|.|.+|++|+.||+|+||.+.++.+......                 
T Consensus       378 kLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~v  457 (733)
T KOG0650|consen  378 KLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCV  457 (733)
T ss_pred             cCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCcee
Confidence            34444444433  34447799999999999999999999999999999999988754211000                 


Q ss_pred             -------------------------------c-----------ccccc---CCccceEEEeecCCeEEEEeecCc-----
Q 022019          101 -------------------------------C-----------SLAKD---QDSYEASLVVTEGESVYDFCWFPH-----  130 (304)
Q Consensus       101 -------------------------------~-----------~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~-----  130 (304)
                                                     .           .....   ......++.+.+...|..+.|+-.     
T Consensus       458 LAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla  537 (733)
T KOG0650|consen  458 LAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA  537 (733)
T ss_pred             EEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Confidence                                           0           00000   011113456677778888888432     


Q ss_pred             ---------------------------------cceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceE
Q 022019          131 ---------------------------------MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAF  177 (304)
Q Consensus       131 ---------------------------------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  177 (304)
                                                       .+.|+|...+|++++. ..|++||+..+..+..+....     ..|.
T Consensus       538 tV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~-----kwiS  611 (733)
T KOG0650|consen  538 TVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGS-----KWIS  611 (733)
T ss_pred             EeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCC-----eeee
Confidence                                             1334444444444443 345556555544443333222     2788


Q ss_pred             EEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC---
Q 022019          178 SVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---  253 (304)
Q Consensus       178 ~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~---  253 (304)
                      +++.+|.|..|++| .|+.+..||+.....+.+.+       ..|...+++++|++ .-.++++|+.||++.||.-.   
T Consensus       612 ~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l-------r~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~  683 (733)
T KOG0650|consen  612 SMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL-------RLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYN  683 (733)
T ss_pred             eeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh-------hhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeeh
Confidence            99999999888865 99999999998764444322       66888899999999 66699999999999998532   


Q ss_pred             ---C---ceEeEEeccccCC----eEEEEECCCCcEEEEeeccCCeEEEE
Q 022019          254 ---N---MELLYVLHGQEGG----VTHVQFSRDGNYLYTGGRKDPYILCW  293 (304)
Q Consensus       254 ---~---~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~~d~~i~vw  293 (304)
                         .   --++..+.+|...    |..+.|+|...+|+++| .||+|++|
T Consensus       684 Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAG-Ad~tirlf  732 (733)
T KOG0650|consen  684 DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAG-ADGTIRLF  732 (733)
T ss_pred             hhhcCCceEeeeeccCceeecccceEeecccCCCceEEecC-CCceEEee
Confidence               1   1367788888765    99999999999999999 99999998

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.8e-22  Score=149.86  Aligned_cols=197  Identities=18%  Similarity=0.320  Sum_probs=156.6

Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEE
Q 022019           63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (304)
Q Consensus        63 V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (304)
                      -.|+.|++.|.+||+|+.||.|.|||+.+...                 ......|..+|.+++|       |++|+.|+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-----------------ar~lsaH~~pi~sl~W-------S~dgr~Ll   81 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-----------------ARMLSAHVRPITSLCW-------SRDGRKLL   81 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch-----------------hhhhhccccceeEEEe-------cCCCCEee
Confidence            78999999999999999999999999986542                 2245566789999999       88999999


Q ss_pred             EEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeeeeeccccc
Q 022019          143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEG  220 (304)
Q Consensus       143 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  220 (304)
                      +++.|..|.+||+..|.+...+....      +|+...|+|.....+ +. .+..-.+.++..+..     ..+.....+
T Consensus        82 tsS~D~si~lwDl~~gs~l~rirf~s------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-----~~Lp~d~d~  150 (405)
T KOG1273|consen   82 TSSRDWSIKLWDLLKGSPLKRIRFDS------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-----SVLPKDDDG  150 (405)
T ss_pred             eecCCceeEEEeccCCCceeEEEccC------ccceeeeccccCCeEEEEEecCCcEEEEecCCce-----eeccCCCcc
Confidence            99999999999999999998888776      999999999644333 33 555566666653211     111111111


Q ss_pred             c-ccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc-CCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          221 Q-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       221 ~-~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      . .....+..|++ .+.++++|...|.+.++|..+.+++..++... ..|..+.++..|++|+.-+ .|..|+.|+++
T Consensus       151 dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt-sDRvIR~ye~~  226 (405)
T KOG1273|consen  151 DLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT-SDRVIRTYEIS  226 (405)
T ss_pred             ccccccccccccC-CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec-CCceEEEEehh
Confidence            1 11123346888 88899999999999999999999999988655 7899999999999999999 99999999986

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=2.3e-23  Score=163.68  Aligned_cols=228  Identities=20%  Similarity=0.361  Sum_probs=174.3

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      +.+|++.......+...+. .....+.|.++...|||+.|++|+.-.++.|||+.......+....              
T Consensus       442 VKVWdis~pg~k~PvsqLd-cl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt--------------  506 (705)
T KOG0639|consen  442 VKVWDISQPGNKSPVSQLD-CLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT--------------  506 (705)
T ss_pred             EEEeeccCCCCCCcccccc-ccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC--------------
Confidence            4567765442222212221 2234678999999999999999999999999999854332111110              


Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCC
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK  194 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~  194 (304)
                       ......+.       ++++||.++.+++..||.|.|||+.+...+..+..|..     .+.||.++++|..|.+| -|+
T Consensus       507 -ssapaCyA-------La~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD-----GascIdis~dGtklWTGGlDn  573 (705)
T KOG0639|consen  507 -SSAPACYA-------LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-----GASCIDISKDGTKLWTGGLDN  573 (705)
T ss_pred             -Ccchhhhh-------hhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC-----CceeEEecCCCceeecCCCcc
Confidence             00112222       35599999999999999999999999999999998776     88999999999999976 999


Q ss_pred             eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEEC
Q 022019          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS  274 (304)
Q Consensus       195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  274 (304)
                      +|+.||++....       +..  ......|.++..+| .+.++++|.+++.+.|-.... .....+.-|++.|.++.|.
T Consensus       574 tvRcWDlregrq-------lqq--hdF~SQIfSLg~cP-~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa  642 (705)
T KOG0639|consen  574 TVRCWDLREGRQ-------LQQ--HDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFA  642 (705)
T ss_pred             ceeehhhhhhhh-------hhh--hhhhhhheecccCC-CccceeeecccCcEEEEecCC-ccceeecccccEEEEEEec
Confidence            999999987421       111  22345689999999 788999999999999988743 4445677799999999999


Q ss_pred             CCCcEEEEeeccCCeEEEEecccceeeee
Q 022019          275 RDGNYLYTGGRKDPYILCWDLRKAVQVVY  303 (304)
Q Consensus       275 ~~~~~l~~~~~~d~~i~vwd~~~~~~~~~  303 (304)
                      +.|+++++.| .|+.+..|.+--|..|++
T Consensus       643 ~cGkwfvStG-kDnlLnawrtPyGasiFq  670 (705)
T KOG0639|consen  643 YCGKWFVSTG-KDNLLNAWRTPYGASIFQ  670 (705)
T ss_pred             ccCceeeecC-chhhhhhccCccccceee
Confidence            9999999999 999999999888777653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.91  E-value=3.1e-22  Score=152.75  Aligned_cols=218  Identities=21%  Similarity=0.356  Sum_probs=165.7

Q ss_pred             ceeeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC
Q 022019           51 NQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (304)
                      +.+-...||+++|..++|+| +...+|+||.|.+|.||.+.++.+.....          .....+.+|...|--+.|+|
T Consensus        72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt----------epvv~L~gH~rrVg~V~wHP  141 (472)
T KOG0303|consen   72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT----------EPVVELYGHQRRVGLVQWHP  141 (472)
T ss_pred             CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc----------cceEEEeecceeEEEEeecc
Confidence            34446789999999999999 66789999999999999998776543332          22346778889999999998


Q ss_pred             ccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCccc
Q 022019          130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~  208 (304)
                      .      ..+.|++++.|.+|.+||+.+|+...++. |.     ..|+++.|+.+|.++++ +.|..|+|||.+++.   
T Consensus       142 t------A~NVLlsag~Dn~v~iWnv~tgeali~l~-hp-----d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~---  206 (472)
T KOG0303|consen  142 T------APNVLLSAGSDNTVSIWNVGTGEALITLD-HP-----DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT---  206 (472)
T ss_pred             c------chhhHhhccCCceEEEEeccCCceeeecC-CC-----CeEEEEEeccCCceeeeecccceeEEEcCCCCc---
Confidence            7      34479999999999999999999877766 33     38999999999999995 599999999999842   


Q ss_pred             eeeeeeecccccccc-ceeEEEeecCCCcEEEEEe---cCCeEEEEecCCceE---eEEeccccCCeEEEEECCCCcEEE
Q 022019          209 EKYSTLKGNKEGQAG-IMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNMEL---LYVLHGQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~  281 (304)
                           +.....+|.+ ....+.|-. ++.++.+|.   .+..+.+||..+.+.   ..++. ..+.|.---|.||...|+
T Consensus       207 -----~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivY  279 (472)
T KOG0303|consen  207 -----VVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVY  279 (472)
T ss_pred             -----EeeecccccCCCcceeEEec-cCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEE
Confidence                 2111133332 234456666 555555553   367899999876542   33444 345677778899999998


Q ss_pred             EeeccCCeEEEEeccccee
Q 022019          282 TGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       282 ~~~~~d~~i~vwd~~~~~~  300 (304)
                      .+|..|+.|+.|++.+...
T Consensus       280 l~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  280 LCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             EEecCCcceEEEEecCCCc
Confidence            8887899999999987654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=4.3e-23  Score=153.54  Aligned_cols=218  Identities=16%  Similarity=0.246  Sum_probs=171.5

Q ss_pred             cceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC
Q 022019           50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (304)
Q Consensus        50 ~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (304)
                      ++..+.+.||++.|+.++-......+.+++.|.+.+||.++++.+..                 ...+|.+.|.++.|  
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~-----------------~Y~GH~GSVNsikf--  198 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA-----------------TYTGHTGSVNSIKF--  198 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecccccee-----------------eecccccceeeEEe--
Confidence            34566789999999999998877799999999999999999776533                 34456688999988  


Q ss_pred             ccceeCCCccEEEEEeCCCCEEEEEc------CCC--------e--e-------------------eEEeeccccccccc
Q 022019          130 HMSASDPTSCVFASTTRDHPIHLWDA------TTG--------L--L-------------------RCTYRAYDAVDEIT  174 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~~~dg~i~i~d~------~~~--------~--~-------------------~~~~~~~~~~~~~~  174 (304)
                           ++.+.++++++.|++-+||..      ...        +  .                   ....+.....+|..
T Consensus       199 -----h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~  273 (481)
T KOG0300|consen  199 -----HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRA  273 (481)
T ss_pred             -----ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecccc
Confidence                 668889999999999999972      110        0  0                   00000111123445


Q ss_pred             ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC
Q 022019          175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~  253 (304)
                      .|.+..|-..|+.++++ -|.+..+||+++        ..+...+.+|....+.++-+| ..+++++++.|.+.++||++
T Consensus       274 vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt--------ge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFR  344 (481)
T KOG0300|consen  274 VVSACDWLAGGQQMVTASWDRTANLWDVET--------GEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFR  344 (481)
T ss_pred             ceEehhhhcCcceeeeeeccccceeeeecc--------CceeccccCcchhccccccCC-cceEEEEeccCceeEeccch
Confidence            77888888888888855 999999999988        344455588999999999999 88899999999999999998


Q ss_pred             Cc-eEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          254 NM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       254 ~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      .. ..+..|.||...|+++.|..+. .+++|+ +|.+|++||+++.+..+
T Consensus       345 eaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgS-DDrTvKvWdLrNMRspl  392 (481)
T KOG0300|consen  345 EAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGS-DDRTVKVWDLRNMRSPL  392 (481)
T ss_pred             hhcceeeeecccccceeEEEEecCC-ceeecC-CCceEEEeeeccccCcc
Confidence            43 3577889999999999998765 488899 99999999999876543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.5e-22  Score=163.32  Aligned_cols=196  Identities=19%  Similarity=0.317  Sum_probs=157.9

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEE
Q 022019           65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST  144 (304)
Q Consensus        65 ~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  144 (304)
                      -+.|+. .+.||.|. ...|.+|+..++...                 .+...+...|+++.|       +++|.+|++|
T Consensus       182 lldWss-~n~laVal-g~~vylW~~~s~~v~-----------------~l~~~~~~~vtSv~w-------s~~G~~LavG  235 (484)
T KOG0305|consen  182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVT-----------------ELCSFGEELVTSVKW-------SPDGSHLAVG  235 (484)
T ss_pred             Hhhccc-CCeEEEEe-cceEEEEecCCCceE-----------------EeEecCCCceEEEEE-------CCCCCEEEEe
Confidence            377873 44666654 447999998765421                 122122578999988       7899999999


Q ss_pred             eCCCCEEEEEcCCCeeeEEeec-ccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccc
Q 022019          145 TRDHPIHLWDATTGLLRCTYRA-YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA  222 (304)
Q Consensus       145 ~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  222 (304)
                      ..+|.|.|||..+.+....+.. |..     .|-+++|+  +..+.+| .++.|..+|++.......       ...+|.
T Consensus       236 ~~~g~v~iwD~~~~k~~~~~~~~h~~-----rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-------~~~~H~  301 (484)
T KOG0305|consen  236 TSDGTVQIWDVKEQKKTRTLRGSHAS-----RVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-------TLQGHR  301 (484)
T ss_pred             ecCCeEEEEehhhccccccccCCcCc-----eeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-------hhhccc
Confidence            9999999999998888777776 443     89999998  5566666 999999999998543222       247889


Q ss_pred             cceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCC-CcEEEEee-ccCCeEEEEeccccee
Q 022019          223 GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD-GNYLYTGG-RKDPYILCWDLRKAVQ  300 (304)
Q Consensus       223 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-~~d~~i~vwd~~~~~~  300 (304)
                      ..|..++|++ ++.++|+|+.|+.+.|||.....++..+..|...|..++|+|- ...||+|+ ..|++|++||+.+++.
T Consensus       302 qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~  380 (484)
T KOG0305|consen  302 QEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR  380 (484)
T ss_pred             ceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE
Confidence            9999999999 7889999999999999999888999999999999999999995 45677765 4799999999999876


Q ss_pred             e
Q 022019          301 V  301 (304)
Q Consensus       301 ~  301 (304)
                      +
T Consensus       381 i  381 (484)
T KOG0305|consen  381 I  381 (484)
T ss_pred             e
Confidence            5

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.6e-23  Score=178.97  Aligned_cols=217  Identities=15%  Similarity=0.218  Sum_probs=170.5

Q ss_pred             ceeeeecCCCCceeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC
Q 022019           51 NQFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (304)
                      ..+.....|.+.|..+.|++. +++||+|+.||.|.|||+.+.+......               .......|.+++|+-
T Consensus       107 ~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---------------~~~~~~eI~~lsWNr  171 (1049)
T KOG0307|consen  107 EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---------------SQAPPSEIKCLSWNR  171 (1049)
T ss_pred             HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---------------CCCCcccceEeccch
Confidence            345567889999999999995 5599999999999999998644322211               111236789999953


Q ss_pred             ccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCC-cEEE-EE-cC--CeEEEEEcCCC
Q 022019          130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIF-AG-YN--KSVRVFDVHRP  204 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~-~~-~d--~~i~v~d~~~~  204 (304)
                      .      ....|++++.+|.+.|||++..+.+..+..+...   ..+..++|+|++ ..++ ++ .|  -.|.+||+|..
T Consensus       172 k------vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~---~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a  242 (1049)
T KOG0307|consen  172 K------VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR---MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA  242 (1049)
T ss_pred             h------hhHHhhccCCCCCceeccccCCCcccccccCCCc---cceeeeeeCCCCceeeeeecCCCCCceeEeeccccc
Confidence            2      4457999999999999999988777666655432   257899999986 3344 44 33  46999999875


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCc-EEEEe
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-YLYTG  283 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~  283 (304)
                      ....+       ...+|...|.++.|++.+.+++++++.|+.|.+|+.++++.+..+.....++..+.|+|... .++++
T Consensus       243 ssP~k-------~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~a  315 (1049)
T KOG0307|consen  243 SSPLK-------ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAA  315 (1049)
T ss_pred             CCchh-------hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhh
Confidence            43333       23788999999999998889999999999999999999999999998888999999999887 55556


Q ss_pred             eccCCeEEEEecccce
Q 022019          284 GRKDPYILCWDLRKAV  299 (304)
Q Consensus       284 ~~~d~~i~vwd~~~~~  299 (304)
                      + .||.|.||.+..+.
T Consensus       316 s-fdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  316 S-FDGKISIYSLQGTD  330 (1049)
T ss_pred             e-eccceeeeeeecCC
Confidence            6 99999999997654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.3e-21  Score=143.50  Aligned_cols=223  Identities=16%  Similarity=0.254  Sum_probs=157.3

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      ...+|.+-|.++.|.+-|+.+|||+.|++|+|||.....-             ......-...|...|..+.|.+     
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-------------~W~~Ts~Wrah~~Si~rV~WAh-----   69 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-------------TWSCTSSWRAHDGSIWRVVWAH-----   69 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-------------ceEEeeeEEecCCcEEEEEecC-----
Confidence            3468999999999999999999999999999999754321             2222334556788999999954     


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCe--e--eEEeecccccccccceEEEEECCC--CcEEE-EEcCCeEEEEEcCCCCcc
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGL--L--RCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AGYNKSVRVFDVHRPGRD  207 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~--~--~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~-~~~d~~i~v~d~~~~~~~  207 (304)
                      ..-|+.+|+++.|+++.||.=....  .  ..-............|+.+.|.|.  |-.++ ++.||.++||+.-.+...
T Consensus        70 PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL  149 (361)
T KOG2445|consen   70 PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL  149 (361)
T ss_pred             ccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc
Confidence            3468899999999999999742110  0  000111111123348999999995  56666 459999999998653221


Q ss_pred             c-----eeeeeeeccccccccceeEEEeecCC--CcEEEEEecC-----CeEEEEecCC----ceEeEEeccccCCeEEE
Q 022019          208 F-----EKYSTLKGNKEGQAGIMSAIAFSPTH--TGMLAIGSYS-----QTSAIYREDN----MELLYVLHGQEGGVTHV  271 (304)
Q Consensus       208 ~-----~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~d-----g~i~i~d~~~----~~~~~~~~~~~~~v~~~  271 (304)
                      .     ..++.+......+..+..|+.|+|..  ..+|++|+.+     +.+.||....    ...+.++.+|..+|+++
T Consensus       150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di  229 (361)
T KOG2445|consen  150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDI  229 (361)
T ss_pred             ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceee
Confidence            1     11111222233456678899999832  3578888876     4788886543    34677788999999999


Q ss_pred             EECCCC----cEEEEeeccCCeEEEEeccc
Q 022019          272 QFSRDG----NYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       272 ~~~~~~----~~l~~~~~~d~~i~vwd~~~  297 (304)
                      +|.|+-    ..||+++ .|| |+||+++.
T Consensus       230 ~wAPn~Gr~y~~lAvA~-kDg-v~I~~v~~  257 (361)
T KOG2445|consen  230 SWAPNIGRSYHLLAVAT-KDG-VRIFKVKV  257 (361)
T ss_pred             eeccccCCceeeEEEee-cCc-EEEEEEee
Confidence            999963    4688888 999 99999985

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=1.4e-20  Score=150.30  Aligned_cols=252  Identities=15%  Similarity=0.155  Sum_probs=155.5

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeE-EEecCCCeEEEeeCCCCCCccccccc------cccccC
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNAC------SLAKDQ  107 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~------~~~~~~  107 (304)
                      .+..|+........      .+..|. .+.+++|+|+++.+ ++++.++.|++||..+++........      ....+.
T Consensus        12 ~v~~~d~~t~~~~~------~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g   84 (300)
T TIGR03866        12 TISVIDTATLEVTR------TFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNG   84 (300)
T ss_pred             EEEEEECCCCceEE------EEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCC
Confidence            34556665544332      444443 36789999999876 56778899999999876543221110      000000


Q ss_pred             ---------CccceEEEeecCCeEEEEe--ecCccceeCCCccEEEEEeCCC-CEEEEEcCCCeeeEEeecccccccccc
Q 022019          108 ---------DSYEASLVVTEGESVYDFC--WFPHMSASDPTSCVFASTTRDH-PIHLWDATTGLLRCTYRAYDAVDEITA  175 (304)
Q Consensus       108 ---------~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~  175 (304)
                               ......+.......+..+.  ..+..++++|++.++++++.++ .+.+||..+++.........      .
T Consensus        85 ~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~  158 (300)
T TIGR03866        85 KILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ------R  158 (300)
T ss_pred             CEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC------C
Confidence                     0111111111111121111  1245567789999999888765 46778988776655443221      4


Q ss_pred             eEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC
Q 022019          176 AFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (304)
Q Consensus       176 v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~  253 (304)
                      +.++.|+|+++.++ ++ .++.|++||+++.. ....+................++|+|++...+++.+.++.+.+||++
T Consensus       159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRK-VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             ccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence            56799999999886 44 68999999998642 11111100000000111245688999544444555567789999999


Q ss_pred             CceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          254 NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       254 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +++.+..+. +...+.+++|+|+|.+|++++..+|.|.+||+++++.+
T Consensus       238 ~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~  284 (300)
T TIGR03866       238 TYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI  284 (300)
T ss_pred             CCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            888776654 44578999999999999987536999999999998764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.90  E-value=1.5e-23  Score=150.89  Aligned_cols=206  Identities=19%  Similarity=0.269  Sum_probs=169.1

Q ss_pred             eecCCCCceeEEEEcC---CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           55 TSSIPNNFLKGIKWSP---DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~---~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      +..||..+|..++|||   +|-+|++++.||.-.+-+=+++...                 ....+|...|+..+.    
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi-----------------gtfeghkgavw~~~l----   67 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI-----------------GTFEGHKGAVWSATL----   67 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE-----------------EeeeccCcceeeeec----
Confidence            5679999999999997   7889999999998777655554432                 245566788887765    


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcccee
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~  210 (304)
                         +.+....++++.|-+-++||.-+|..+..+....      -|..++|+.|.++|++| .+.-++|||++.+..+...
T Consensus        68 ---~~na~~aasaaadftakvw~a~tgdelhsf~hkh------ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E  138 (334)
T KOG0278|consen   68 ---NKNATRAASAAADFTAKVWDAVTGDELHSFEHKH------IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE  138 (334)
T ss_pred             ---Cchhhhhhhhcccchhhhhhhhhhhhhhhhhhhh------eeeeEEecccchhhhccchHHHhhhhhccCCCCCchh
Confidence               4455678899999999999999998877665332      78999999999999966 9999999999886544433


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeE
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI  290 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i  290 (304)
                      +       .+|.+.|..+.|.. ..+.|+++++|++||+||.+++..++++. ...+|+++..+++|++|.++  ..+.|
T Consensus       139 ~-------~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia--~gssV  207 (334)
T KOG0278|consen  139 I-------SGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA--YGSSV  207 (334)
T ss_pred             h-------cCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe--cCcee
Confidence            3       78999999999999 66677888999999999999999999998 56789999999999977766  57899


Q ss_pred             EEEecccceee
Q 022019          291 LCWDLRKAVQV  301 (304)
Q Consensus       291 ~vwd~~~~~~~  301 (304)
                      .+||..+...+
T Consensus       208 ~Fwdaksf~~l  218 (334)
T KOG0278|consen  208 KFWDAKSFGLL  218 (334)
T ss_pred             EEeccccccce
Confidence            99999886554

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=2.5e-22  Score=147.90  Aligned_cols=173  Identities=18%  Similarity=0.327  Sum_probs=138.7

Q ss_pred             ecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           56 SSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      -.+|+-.|..+.|-| |...|.+++-|.+++|||..+.+..                  ..+.-...|++.+|.|-..  
T Consensus        97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a------------------~~F~me~~VYshamSp~a~--  156 (397)
T KOG4283|consen   97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA------------------VDFKMEGKVYSHAMSPMAM--  156 (397)
T ss_pred             CccceeeeeeeEEeeecCceeecccccceEEEeecccceee------------------EEeecCceeehhhcChhhh--
Confidence            357888999999999 7778899999999999999865432                  3344457888888877532  


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~  212 (304)
                        ...++|+|..|-.|++.|+.+|....++.+|..     .|.++.|+|...+++ +| .||.|++||++....++..+.
T Consensus       157 --sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-----~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD  229 (397)
T KOG4283|consen  157 --SHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-----GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLD  229 (397)
T ss_pred             --cceEEEEecCCCcEEEEeccCCcceeeeccccC-----ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEee
Confidence              345788999999999999999999999998776     999999999988777 55 999999999997655443332


Q ss_pred             ee-------eccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce
Q 022019          213 TL-------KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (304)
Q Consensus       213 ~~-------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~  256 (304)
                      .-       .....+|.+.+.+++|+. ++.++++++.|..+++|+..+|+
T Consensus       230 ~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  230 QHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             cccCccCccccccccccceeeeeeecc-cchhhhhccCccceEEeecccCc
Confidence            21       123467888999999999 78899999999999999987663

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=8.8e-23  Score=160.16  Aligned_cols=203  Identities=18%  Similarity=0.245  Sum_probs=164.2

Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEE
Q 022019           63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (304)
Q Consensus        63 V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (304)
                      -.|++......|+++|+..+.|+|||++...+                 ......|...|+++.|       +....+||
T Consensus        82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~-----------------hr~lkdh~stvt~v~Y-------N~~DeyiA  137 (673)
T KOG4378|consen   82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLI-----------------HRFLKDHQSTVTYVDY-------NNTDEYIA  137 (673)
T ss_pred             HHHHhhhhcceeeeccCcCceeeehhhHHHHH-----------------hhhccCCcceeEEEEe-------cCCcceeE
Confidence            34555555558999999999999999973322                 2234456688888887       55778999


Q ss_pred             EEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCCCccceeeeeeeccccc
Q 022019          143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEG  220 (304)
Q Consensus       143 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  220 (304)
                      +++..|.|.|..+.++.....+.....    ..|.-+.|+|..++++  ++.+|.|.+||+...       .........
T Consensus       138 svs~gGdiiih~~~t~~~tt~f~~~sg----qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-------sp~~~~~~~  206 (673)
T KOG4378|consen  138 SVSDGGDIIIHGTKTKQKTTTFTIDSG----QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-------SPIFHASEA  206 (673)
T ss_pred             EeccCCcEEEEecccCccccceecCCC----CeEEEeecccccceeeEeeccCCeEEEEeccCC-------Ccccchhhh
Confidence            999999999999999887776765533    2667899999988888  459999999999753       223333477


Q ss_pred             cccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       221 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      |..+...++|+|.+..+|++.+.|..|.+||++..+....+. ...+.+.++|+++|.+|++|. ..|.|..||++..+.
T Consensus       207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~-s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGN-SKGELIAYDMRSTKA  284 (673)
T ss_pred             ccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeec-CCceEEEEecccCCC
Confidence            899999999999888999999999999999999877777775 467899999999999999999 999999999998765


Q ss_pred             ee
Q 022019          301 VV  302 (304)
Q Consensus       301 ~~  302 (304)
                      .+
T Consensus       285 Pv  286 (673)
T KOG4378|consen  285 PV  286 (673)
T ss_pred             Cc
Confidence            43

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6.8e-22  Score=146.86  Aligned_cols=248  Identities=16%  Similarity=0.210  Sum_probs=173.8

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccc------cccccCC
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC------SLAKDQD  108 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~------~~~~~~~  108 (304)
                      .+..||..+.....      .+.+|-.+|++++||+||+.|+|++.|..|.+||+..+.....+...      .+.+...
T Consensus        46 ~vvI~D~~T~~iar------~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~  119 (405)
T KOG1273|consen   46 RVVIYDFDTFRIAR------MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKR  119 (405)
T ss_pred             cEEEEEccccchhh------hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccC
Confidence            56678877766444      78899999999999999999999999999999999988765443321      1222222


Q ss_pred             ccceEEEeecCCeEEEE----------------eecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccccccc
Q 022019          109 SYEASLVVTEGESVYDF----------------CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE  172 (304)
Q Consensus       109 ~~~~~~~~~~~~~v~~~----------------~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  172 (304)
                      +......+.....+..+                ...+.+..|++.|+++++|...|.+.++|..+.+++..++....   
T Consensus       120 n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~---  196 (405)
T KOG1273|consen  120 NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSV---  196 (405)
T ss_pred             CeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechh---
Confidence            22222222111111111                11222334678899999999999999999999998888876552   


Q ss_pred             ccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcc-----ceeeeeeeccccccccceeEEEeecCCCcEEEEEec-CC
Q 022019          173 ITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRD-----FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQ  245 (304)
Q Consensus       173 ~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg  245 (304)
                       ..|..+.++..|++++.- .|+.|+.|+++.-...     ......+...  -....-.+++|+. ++.++++|+. -.
T Consensus       197 -~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv--VNk~~Wk~ccfs~-dgeYv~a~s~~aH  272 (405)
T KOG1273|consen  197 -QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV--VNKLQWKKCCFSG-DGEYVCAGSARAH  272 (405)
T ss_pred             -eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH--HhhhhhhheeecC-CccEEEeccccce
Confidence             288899999999999965 9999999998731110     1100111000  0112246789999 5656666553 45


Q ss_pred             eEEEEecCCceEeEEecccc-CCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          246 TSAIYREDNMELLYVLHGQE-GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       246 ~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      .++||....|.+++.+.|.+ .....+.|+|-...|++..  .|.+++|....
T Consensus       273 aLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~--sg~v~iw~~~~  323 (405)
T KOG1273|consen  273 ALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA--SGVVYIWAVVQ  323 (405)
T ss_pred             eEEEEecCCcceeeeecCCchhheeecccccceeeeeecc--CCceEEEEeec
Confidence            69999999999999999887 4688899999988888774  89999998754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.90  E-value=8.4e-22  Score=144.70  Aligned_cols=233  Identities=16%  Similarity=0.265  Sum_probs=167.4

Q ss_pred             ceeeecCCCccc---ccccceeeeec-CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCc-cccccccccccCCc
Q 022019           35 PLIRFDVPPHRT---YHFYNQFRTSS-IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS-YDVNACSLAKDQDS  109 (304)
Q Consensus        35 ~~~~~~~~~~~~---~~~~~~~~~~~-~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~~~~~~  109 (304)
                      ...+|.++....   +..+..+..+. .+-+.|.|+.|.|++..+++-. |..|.+|++.+.... ..+...        
T Consensus        94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss--------  164 (370)
T KOG1007|consen   94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSS--------  164 (370)
T ss_pred             eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccc--------
Confidence            456677664432   23334444444 5667999999999999998766 789999999866442 111111        


Q ss_pred             cceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE
Q 022019          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (304)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  189 (304)
                          ....+....++-+|.|+     .+++.+++. .|+++..||+++.+....+..    .|...|..+.|+|+.++++
T Consensus       165 ----~s~e~~~~ftsg~WspH-----Hdgnqv~tt-~d~tl~~~D~RT~~~~~sI~d----AHgq~vrdlDfNpnkq~~l  230 (370)
T KOG1007|consen  165 ----ESAEMRHSFTSGAWSPH-----HDGNQVATT-SDSTLQFWDLRTMKKNNSIED----AHGQRVRDLDFNPNKQHIL  230 (370)
T ss_pred             ----ccccccceecccccCCC-----CccceEEEe-CCCcEEEEEccchhhhcchhh----hhcceeeeccCCCCceEEE
Confidence                11123456777788773     377777766 478999999998766555442    2333899999999987766


Q ss_pred             -E-EcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc------------
Q 022019          190 -A-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM------------  255 (304)
Q Consensus       190 -~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~------------  255 (304)
                       + |.||.|++||.|....+.       ....+|..++.++.|+|....++++|+.|..|.+|...+-            
T Consensus       231 vt~gDdgyvriWD~R~tk~pv-------~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~de  303 (370)
T KOG1007|consen  231 VTCGDDGYVRIWDTRKTKFPV-------QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDE  303 (370)
T ss_pred             EEcCCCccEEEEeccCCCccc-------cccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccccc
Confidence             3 499999999999864333       3347899999999999988889999999999999964211            


Q ss_pred             -----------------eEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          256 -----------------ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       256 -----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                                       ..+.++..|+..|++++||.-.+++++.=+.||++.|=.+..
T Consensus       304 se~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  304 SESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence                             134467789999999999988887665544999998876644

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=5.6e-22  Score=162.19  Aligned_cols=258  Identities=15%  Similarity=0.175  Sum_probs=173.6

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCC-----------CCeEEEecCCCeEEEeeCCCCCCccc----cc
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD-----------GSSFLTSSEDKTLRIFSLPENGISYD----VN   99 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~-----------~~~l~s~~~dg~v~vwd~~~~~~~~~----~~   99 (304)
                      .++.||+........   ....--|...|+++.--|.           ...|+||+.|++||+|++....-...    +.
T Consensus       347 SlYvWDvrD~~kvgk---~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil  423 (1080)
T KOG1408|consen  347 SLYVWDVRDVNKVGK---CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL  423 (1080)
T ss_pred             eEEEEeccccccccc---eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence            567888876655432   2244468889999887661           13689999999999999986221100    00


Q ss_pred             cc---cccccCCccc------eEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccccc
Q 022019          100 AC---SLAKDQDSYE------ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV  170 (304)
Q Consensus       100 ~~---~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  170 (304)
                      ..   ..........      ..+.........+-.+-..+++++|+|++|++|..-|.+++|++...+....+..|.. 
T Consensus       424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHes-  502 (1080)
T KOG1408|consen  424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHES-  502 (1080)
T ss_pred             hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccc-
Confidence            00   0000000000      0000000111112222233445699999999999999999999998887777777665 


Q ss_pred             ccccceEEEEECCC---CcEEEE-EcCCeEEEEEcCCCCccceeee-------------------ee-------------
Q 022019          171 DEITAAFSVAFNPT---GTKIFA-GYNKSVRVFDVHRPGRDFEKYS-------------------TL-------------  214 (304)
Q Consensus       171 ~~~~~v~~i~~~~~---~~~l~~-~~d~~i~v~d~~~~~~~~~~~~-------------------~~-------------  214 (304)
                          .|.|+.|+..   .++|++ +.|+.|.|||+...-.....+.                   .+             
T Consensus       503 ----EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~  578 (1080)
T KOG1408|consen  503 ----EILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVN  578 (1080)
T ss_pred             ----eeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehh
Confidence                9999999863   466774 5999999999864311000000                   00             


Q ss_pred             e----------ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec---cccCCeEEEEECCCCcEEE
Q 022019          215 K----------GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH---GQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       215 ~----------~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~  281 (304)
                      .          ....-....++.|+..| ...++++++.|..|+|||+.+++..+.|+   +|++....+...|.|-||+
T Consensus       579 qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a  657 (1080)
T KOG1408|consen  579 QKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA  657 (1080)
T ss_pred             ccccCceeccccccccccceEEEeeeCC-CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEE
Confidence            0          00011123477888888 67799999999999999999999999997   4667888999999999999


Q ss_pred             EeeccCCeEEEEecccceeee
Q 022019          282 TGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       282 ~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      +.+ .|.+|.++|+-+|+++.
T Consensus       658 tSc-sdktl~~~Df~sgEcvA  677 (1080)
T KOG1408|consen  658 TSC-SDKTLCFVDFVSGECVA  677 (1080)
T ss_pred             Eee-cCCceEEEEeccchhhh
Confidence            999 99999999999998874

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=1.1e-21  Score=162.63  Aligned_cols=199  Identities=18%  Similarity=0.195  Sum_probs=166.0

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      -...+++++.++.|++.+.|...|+|-+|++..+-......              -...|..+|+.++.       +.-+
T Consensus       447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~--------------~~~ah~~~V~gla~-------D~~n  505 (910)
T KOG1539|consen  447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG--------------DSPAHKGEVTGLAV-------DGTN  505 (910)
T ss_pred             cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc--------------cCccccCceeEEEe-------cCCC
Confidence            34789999999999999999999999999998664322211              11246678888865       5567


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeecc
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~  217 (304)
                      +.+++++.+|-+++||..+......+....      .+.++..+.....++.+ .|-.|+++|+.+        ..+...
T Consensus       506 ~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~------~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t--------~kvvR~  571 (910)
T KOG1539|consen  506 RLLVSAGADGILKFWDFKKKVLKKSLRLGS------SITGIVYHRVSDLLAIALDDFSIRVVDVVT--------RKVVRE  571 (910)
T ss_pred             ceEEEccCcceEEEEecCCcceeeeeccCC------CcceeeeeehhhhhhhhcCceeEEEEEchh--------hhhhHH
Confidence            889999999999999999888777766544      77888998888888855 889999999976        455566


Q ss_pred             ccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccC-CeEEEEec
Q 022019          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD-PYILCWDL  295 (304)
Q Consensus       218 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-~~i~vwd~  295 (304)
                      +.+|...|++++||| ++++|++++.|++|++||+.++.++..+. -..+++++.|+|+|.+|||+. .| .-|++|-=
T Consensus       572 f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~H-vd~~gIylWsN  647 (910)
T KOG1539|consen  572 FWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVH-VDQNGIYLWSN  647 (910)
T ss_pred             hhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEE-ecCceEEEEEc
Confidence            689999999999999 88999999999999999999999998886 467889999999999999999 55 67999953

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=1.9e-22  Score=158.56  Aligned_cols=207  Identities=14%  Similarity=0.208  Sum_probs=162.6

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE-eecCCeEEEEeecCccceeCC
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV-VTEGESVYDFCWFPHMSASDP  136 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~  136 (304)
                      .|..-|..+.+|...++++||+. |.|+|||+....-.             ..+..+. ......+.++..       .|
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k-------------~PvsqLdcl~rdnyiRSckL-------~p  475 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK-------------SPVSQLDCLNRDNYIRSCKL-------LP  475 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC-------------CccccccccCcccceeeeEe-------cC
Confidence            58889999999999999999985 68999999754221             1111111 113345555554       77


Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeee
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      ||+.|++|++-.++.|||+.........+....   ...++.++.+||.+..+++ .||.|.|||+..        +.+.
T Consensus       476 dgrtLivGGeastlsiWDLAapTprikaeltss---apaCyALa~spDakvcFsccsdGnI~vwDLhn--------q~~V  544 (705)
T KOG0639|consen  476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSS---APACYALAISPDAKVCFSCCSDGNIAVWDLHN--------QTLV  544 (705)
T ss_pred             CCceEEeccccceeeeeeccCCCcchhhhcCCc---chhhhhhhcCCccceeeeeccCCcEEEEEccc--------ceee
Confidence            999999999999999999987654433332221   1167889999999998855 999999999987        5666


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      ..+.+|.+.+.|+..++ ++..|.+|+-|++|+-||++.+..+.... ..+.|.++..+|.+.+|+.|- .++.+-|-..
T Consensus       545 rqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGM-ens~vevlh~  621 (705)
T KOG0639|consen  545 RQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHT  621 (705)
T ss_pred             ecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeec-ccCcEEEEec
Confidence            67799999999999999 78899999999999999999988765554 456799999999999999999 8988888777


Q ss_pred             ccce
Q 022019          296 RKAV  299 (304)
Q Consensus       296 ~~~~  299 (304)
                      ...+
T Consensus       622 skp~  625 (705)
T KOG0639|consen  622 SKPE  625 (705)
T ss_pred             CCcc
Confidence            6543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=3.7e-21  Score=142.37  Aligned_cols=199  Identities=20%  Similarity=0.190  Sum_probs=147.7

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+..|..+|.||.+++....+++|++|++|++||.......                  .....+..|+++..       
T Consensus        89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~------------------~~~d~~kkVy~~~v-------  143 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV------------------GTFDQGKKVYCMDV-------  143 (323)
T ss_pred             eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc------------------cccccCceEEEEec-------
Confidence            45679999999999998889999999999999998852221                  11223357777744       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCccceeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                        .++.|++|+.|..+.+||+++..........   .-.-.+.++++-|++.-++ ++-||.|.+=.++...........
T Consensus       144 --~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS---~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya  218 (323)
T KOG1036|consen  144 --SGNRLVVGTSDRKVLIYDLRNLDEPFQRRES---SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA  218 (323)
T ss_pred             --cCCEEEEeecCceEEEEEcccccchhhhccc---cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence              6779999999999999999976543322111   1112678999999876666 559999988766653111111111


Q ss_pred             eec-----cccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          214 LKG-----NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       214 ~~~-----~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      ++.     .....-.+|.+++|+| -...|++|+.||.|.+||+.+.+.+..+......|.+++|+.+|..||+++
T Consensus       219 FkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  219 FKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             EEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence            111     1112235799999999 567899999999999999999999999988888899999999999999987

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.89  E-value=1.1e-21  Score=144.06  Aligned_cols=220  Identities=17%  Similarity=0.193  Sum_probs=161.3

Q ss_pred             eecCCCCceeEEEEcC-CCCeEEEecCC-------CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEe
Q 022019           55 TSSIPNNFLKGIKWSP-DGSSFLTSSED-------KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC  126 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~-~~~~l~s~~~d-------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  126 (304)
                      .+..|.+.|+.|+-+| +.+.|+|+-.+       -.+-||.+.+.........       -..+..+...+-..+.++.
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~t-------lE~v~~Ldteavg~i~cve  130 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSST-------LECVASLDTEAVGKINCVE  130 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccch-------hhHhhcCCHHHhCceeeEE
Confidence            5678899999999999 55677776442       2467999875432211000       0111112222234788898


Q ss_pred             ecCccceeCCCccEEEEEeCCCCEEEEEcCCCee-eEEeecccccccccceEEEEECC--CCcEEEEEcCCeEEEEEcCC
Q 022019          127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNP--TGTKIFAGYNKSVRVFDVHR  203 (304)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~d~~i~v~d~~~  203 (304)
                      |       .|++..+++-. |..|.+|++..+.. ...+.......+....++-+|+|  +++.+++..|+++..||+|+
T Consensus       131 w-------~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT  202 (370)
T KOG1007|consen  131 W-------EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRT  202 (370)
T ss_pred             E-------cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccc
Confidence            8       55777787765 78899999987765 44444333333444778899999  78899999999999999997


Q ss_pred             CCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-eEeEEeccccCCeEEEEECCCC-cEEE
Q 022019          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDG-NYLY  281 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~  281 (304)
                      ...       ......+|...+..+.|+|+...+|++|+.||.|+|||.+.- .+++++.+|..+|.++.|+|.. ..|+
T Consensus       203 ~~~-------~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiL  275 (370)
T KOG1007|consen  203 MKK-------NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLIL  275 (370)
T ss_pred             hhh-------hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEE
Confidence            422       222236788889999999988889999999999999999864 5899999999999999999965 5677


Q ss_pred             EeeccCCeEEEEeccc
Q 022019          282 TGGRKDPYILCWDLRK  297 (304)
Q Consensus       282 ~~~~~d~~i~vwd~~~  297 (304)
                      +|| .|..|.+|....
T Consensus       276 s~~-SDs~V~Lsca~s  290 (370)
T KOG1007|consen  276 SGG-SDSAVNLSCASS  290 (370)
T ss_pred             ecC-CCceeEEEeccc
Confidence            888 999999997653

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=6.9e-23  Score=175.10  Aligned_cols=215  Identities=17%  Similarity=0.281  Sum_probs=159.0

Q ss_pred             CCceeEEEEcCCCCe----EEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC
Q 022019           60 NNFLKGIKWSPDGSS----FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~----l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (304)
                      ...-+.++|.+.|..    +|.|..||.|.+||...-..           +...........|.+.|..+.|++.     
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----------~~~~~~la~~~~h~G~V~gLDfN~~-----  127 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----------NASEEVLATKSKHTGPVLGLDFNPF-----  127 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------CcchHHHhhhcccCCceeeeecccc-----
Confidence            345778999997765    88889999999999874211           1111122234457788998888543     


Q ss_pred             CCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeee
Q 022019          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       136 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                       .+++|++|+.||.|.|||+..-+......   .......|.+++|+..-.+|+ ++ .+|.+.|||++.....+.    
T Consensus       128 -q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~----  199 (1049)
T KOG0307|consen  128 -QGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK----  199 (1049)
T ss_pred             -CCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc----
Confidence             45599999999999999998754333332   222345899999999776666 44 788999999997522111    


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCC---eEEEEecCCc-eEeEEeccccCCeEEEEECCCC-cEEEEeeccCC
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDG-NYLYTGGRKDP  288 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~d~  288 (304)
                      +..  ......+..++|+|++...+++++.|.   .|.+||+|.. .+++.+.+|..+|.++.|++.+ .+|++++ .|+
T Consensus       200 ls~--~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~  276 (1049)
T KOG0307|consen  200 LSD--TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDN  276 (1049)
T ss_pred             ccc--CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc-CCC
Confidence            111  112244789999998888888888765   4999999864 5888899999999999999977 7888888 999


Q ss_pred             eEEEEecccceee
Q 022019          289 YILCWDLRKAVQV  301 (304)
Q Consensus       289 ~i~vwd~~~~~~~  301 (304)
                      .|.+|+.++++.+
T Consensus       277 ~ii~wN~~tgEvl  289 (1049)
T KOG0307|consen  277 RIICWNPNTGEVL  289 (1049)
T ss_pred             CeeEecCCCceEe
Confidence            9999999998764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=1.5e-21  Score=159.67  Aligned_cols=215  Identities=16%  Similarity=0.203  Sum_probs=167.6

Q ss_pred             eecCCCCceeEEEEcC---CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           55 TSSIPNNFLKGIKWSP---DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~---~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      ....|...|.|+.|+.   ..++||+++.|.-|.|||+..+-                ........|...|+++.|..  
T Consensus       496 ~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny----------------~l~qtld~HSssITsvKFa~--  557 (1080)
T KOG1408|consen  496 FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY----------------DLVQTLDGHSSSITSVKFAC--  557 (1080)
T ss_pred             heecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc----------------chhhhhcccccceeEEEEee--
Confidence            5689999999999986   45689999999999999987432                12224456778999998832  


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCcccee
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~  210 (304)
                         +.-...+++++.|+.|++--.........+.-+........++.|+..|..+++++ +.|..|+|||+..+.    .
T Consensus       558 ---~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK----q  630 (1080)
T KOG1408|consen  558 ---NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK----Q  630 (1080)
T ss_pred             ---cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc----e
Confidence               33346799999999886544332222222333322233347899999999999995 599999999998742    2


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeE
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI  290 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i  290 (304)
                      ...++.. .+|.+....+...| .+.++++.+.|.++.+||.-+++++..+.||...|+.+.|.+|-+.|++.+ .||+|
T Consensus       631 ~k~FKgs-~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvs-gDgCI  707 (1080)
T KOG1408|consen  631 VKSFKGS-RDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVS-GDGCI  707 (1080)
T ss_pred             eeeeccc-ccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeec-CCceE
Confidence            2233322 45667778899999 888999999999999999999999999999999999999999999999999 99999


Q ss_pred             EEEeccc
Q 022019          291 LCWDLRK  297 (304)
Q Consensus       291 ~vwd~~~  297 (304)
                      .||.+..
T Consensus       708 FvW~lp~  714 (1080)
T KOG1408|consen  708 FVWKLPL  714 (1080)
T ss_pred             EEEECch
Confidence            9999865

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.89  E-value=2e-21  Score=158.09  Aligned_cols=201  Identities=17%  Similarity=0.294  Sum_probs=161.3

Q ss_pred             eeecCCCCceeE-EEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           54 RTSSIPNNFLKG-IKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        54 ~~~~~h~~~V~~-i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      ..+.+|.+.|.+ +++.+ ++-.+++|+.|+++.+|.+.......                 ++.+|...|.++.-    
T Consensus        51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~-----------------~LkgH~snVC~ls~----  109 (745)
T KOG0301|consen   51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLY-----------------TLKGHKSNVCSLSI----  109 (745)
T ss_pred             eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchh-----------------hhhccccceeeeec----
Confidence            356678888888 89886 55579999999999999987654432                 44556678877753    


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceee
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~  211 (304)
                         ..++. +++||.|.++++|..  +++...+..|..     .|+++..-|++.++.++.|.+|++|.-.+        
T Consensus       110 ---~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a-----sVWAv~~l~e~~~vTgsaDKtIklWk~~~--------  170 (745)
T KOG0301|consen  110 ---GEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTA-----SVWAVASLPENTYVTGSADKTIKLWKGGT--------  170 (745)
T ss_pred             ---CCcCc-eEecccccceEEecc--hhhhcccCCcch-----heeeeeecCCCcEEeccCcceeeeccCCc--------
Confidence               23444 899999999999975  455555666555     99999999999666667999999998632        


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                        ....+.+|.+.|+.+++-| +. .+++++.||.|++|++ +++.+.++.+|...|++++..+++..++++| .|++++
T Consensus       171 --~l~tf~gHtD~VRgL~vl~-~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g-EDrtlr  244 (745)
T KOG0301|consen  171 --LLKTFSGHTDCVRGLAVLD-DS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG-EDRTLR  244 (745)
T ss_pred             --hhhhhccchhheeeeEEec-CC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec-CCceEE
Confidence              2233478999999999998 43 4789999999999999 8889999999999999999888888999999 999999


Q ss_pred             EEeccccee
Q 022019          292 CWDLRKAVQ  300 (304)
Q Consensus       292 vwd~~~~~~  300 (304)
                      +|+.....+
T Consensus       245 iW~~~e~~q  253 (745)
T KOG0301|consen  245 IWKKDECVQ  253 (745)
T ss_pred             EeecCceEE
Confidence            999875433

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.89  E-value=3.9e-21  Score=147.23  Aligned_cols=260  Identities=16%  Similarity=0.253  Sum_probs=175.9

Q ss_pred             hcHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccc
Q 022019           21 VTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA  100 (304)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~  100 (304)
                      ...+++.+...+.|.+..-......  ....-+..+..|...|+++.|+|+|..||+|+.+|.|.+|-....... ....
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~--~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-~~d~  104 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGD--MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-DADT  104 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCc--eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-cccc
Confidence            6677888888888865444433321  122335588999999999999999999999999999999987642221 1111


Q ss_pred             ccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEE
Q 022019          101 CSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA  180 (304)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~  180 (304)
                      ..........+......|...++.++|       +|++..+++++-|..+++||+..|+....+..|..     -+..++
T Consensus       105 e~~~~ke~w~v~k~lr~h~~diydL~W-------s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-----yvqgva  172 (434)
T KOG1009|consen  105 EADLNKEKWVVKKVLRGHRDDIYDLAW-------SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-----YVQGVA  172 (434)
T ss_pred             hhhhCccceEEEEEecccccchhhhhc-------cCCCceeeeeeccceEEEEEeccceeEeecccccc-----ccceee
Confidence            111111223344555668899999999       77899999999999999999999999888887765     888999


Q ss_pred             ECCCCcEEEE-EcCCeEEEEEcCCCCccceeee--eee------------------------------------------
Q 022019          181 FNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYS--TLK------------------------------------------  215 (304)
Q Consensus       181 ~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~--~~~------------------------------------------  215 (304)
                      |+|-++++++ +.|...+.+.+...... ....  .+.                                          
T Consensus       173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~-~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~  251 (434)
T KOG1009|consen  173 WDPLNQYVASKSSDRHPEGFSAKLKQVI-KRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL  251 (434)
T ss_pred             cchhhhhhhhhccCcccceeeeeeeeee-eeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence            9999988884 56766666555331100 0000  000                                          


Q ss_pred             ------------------------ccccccccceeEEEeecC-----------------CCcEEEEEecCCeEEEEecCC
Q 022019          216 ------------------------GNKEGQAGIMSAIAFSPT-----------------HTGMLAIGSYSQTSAIYREDN  254 (304)
Q Consensus       216 ------------------------~~~~~~~~~v~~~~~~p~-----------------~~~~l~~~~~dg~i~i~d~~~  254 (304)
                                              ........+...+.|+|-                 .+..+++++. ..|+|||.++
T Consensus       252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~  330 (434)
T KOG1009|consen  252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQT  330 (434)
T ss_pred             eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEecccc
Confidence                                    000111112233333320                 2233444443 4688888887


Q ss_pred             ceEeEEec-cccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          255 MELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       255 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      ..++.... -|-..|+.++|++||.+|+..+ .||...+-.++..
T Consensus       331 ~~P~~~v~nihy~~iTDiaws~dg~~l~vSS-~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  331 LEPLAVVDNIHYSAITDIAWSDDGSVLLVSS-TDGFCSLVTFEPW  374 (434)
T ss_pred             ccceEEEeeeeeeeecceeecCCCcEEEEec-cCCceEEEEEcch
Confidence            77766654 5778999999999999999999 9998888776654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.1e-20  Score=150.84  Aligned_cols=229  Identities=15%  Similarity=0.278  Sum_probs=169.5

Q ss_pred             ceeeecCCCcccccccceeeeec-CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSS-IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (304)
                      .+-.|++...-...     ..+. +.+..|.+++|++ +..|++.+.+|.|.-||+.+.+......              
T Consensus        48 ~IEiwN~~~~w~~~-----~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d--------------  107 (691)
T KOG2048|consen   48 NIEIWNLSNNWFLE-----PVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNID--------------  107 (691)
T ss_pred             cEEEEccCCCceee-----EEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEec--------------
Confidence            34456655532222     1333 4467899999994 5578888999999999998765433222              


Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-c
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~  192 (304)
                         ..+..+++++-       +|.+..++.|++||.++.++...++.........   ..+.|.+++|+|++..+++| .
T Consensus       108 ---~~gg~IWsiai-------~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r---q~sRvLslsw~~~~~~i~~Gs~  174 (691)
T KOG2048|consen  108 ---SNGGAIWSIAI-------NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR---QKSRVLSLSWNPTGTKIAGGSI  174 (691)
T ss_pred             ---CCCcceeEEEe-------CCccceEEeecCCceEEEEecCCceEEEEeeccc---ccceEEEEEecCCccEEEeccc
Confidence               23467888876       6677899999999988888877766544333222   22489999999999999977 9


Q ss_pred             CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEE
Q 022019          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ  272 (304)
Q Consensus       193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~  272 (304)
                      ||.|++||...+.........+.........-|.++.|-. ++ .|++|..-|+|.+||...+.++..+..|...|.+++
T Consensus       175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~La  252 (691)
T KOG2048|consen  175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALA  252 (691)
T ss_pred             CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEE
Confidence            9999999998754332111111122222344577888776 33 789999999999999999999999999999999999


Q ss_pred             ECCCCcEEEEeeccCCeEEEEecccce
Q 022019          273 FSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       273 ~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      ..+++.+++++| .|+.|.-|...+.+
T Consensus       253 v~~~~d~vfsaG-vd~~ii~~~~~~~~  278 (691)
T KOG2048|consen  253 VADNEDRVFSAG-VDPKIIQYSLTTNK  278 (691)
T ss_pred             EcCCCCeEEEcc-CCCceEEEEecCCc
Confidence            999999999999 99999988877653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.88  E-value=2.6e-21  Score=142.26  Aligned_cols=214  Identities=18%  Similarity=0.310  Sum_probs=157.4

Q ss_pred             CCCCceeEEEEcCCC-----CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           58 IPNNFLKGIKWSPDG-----SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~-----~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      .|.-+++.+.|.|+.     ++|||++.  .+|+|.+...+.........        ..........+++++.|+..  
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L--------~~~kns~~~aPlTSFDWne~--  161 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVL--------NNNKNSEFCAPLTSFDWNEV--  161 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhh--------ccCcccccCCcccccccccC--
Confidence            678899999999975     35666543  79999987542211111110        00012234468889988643  


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCee---eEEeecccccccccceEEEEECCCCcEEE--EEcCCeEEEEEcCCCCcc
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRD  207 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~i~~~~~~~~l~--~~~d~~i~v~d~~~~~~~  207 (304)
                          +-+++.+++-|-+..|||++++..   ...+-.|..     .|+.++|...+..++  +|.||.+++||+|.... 
T Consensus       162 ----dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK-----EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH-  231 (364)
T KOG0290|consen  162 ----DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK-----EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH-  231 (364)
T ss_pred             ----CcceeEeecccCeEEEEEEeeccccceeeEEEecCc-----ceeEEEeccCccceEEEecCCCcEEEEEeccccc-
Confidence                566999999999999999998732   444555554     999999999765444  57999999999997432 


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecC-CeEEEEecCCc-eEeEEeccccCCeEEEEECCCC-cEEEEee
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDG-NYLYTGG  284 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~  284 (304)
                          .++.........+...++|++++.+++|+-..| ..|.|.|++.. .++..+.+|.+.|+.++|.|.. ..|+++|
T Consensus       232 ----STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG  307 (364)
T KOG0290|consen  232 ----STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG  307 (364)
T ss_pred             ----ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC
Confidence                222222233356688999999888899886665 56999999974 6899999999999999999964 6789999


Q ss_pred             ccCCeEEEEecccc
Q 022019          285 RKDPYILCWDLRKA  298 (304)
Q Consensus       285 ~~d~~i~vwd~~~~  298 (304)
                       +|..+.+||+...
T Consensus       308 -DD~qaliWDl~q~  320 (364)
T KOG0290|consen  308 -DDCQALIWDLQQM  320 (364)
T ss_pred             -CcceEEEEecccc
Confidence             9999999999753

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=8.5e-21  Score=140.18  Aligned_cols=203  Identities=18%  Similarity=0.264  Sum_probs=150.6

Q ss_pred             eecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      .-.+..+.|.+|+||| ...+++.++.||+||+|++.....               ........+..+|.+++|      
T Consensus        22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~---------------~~~ka~~~~~~PvL~v~W------   80 (347)
T KOG0647|consen   22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ---------------LVPKAQQSHDGPVLDVCW------   80 (347)
T ss_pred             cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCc---------------ccchhhhccCCCeEEEEE------
Confidence            4556788999999999 455666889999999999985311               111244556789999999      


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCc--EEEEE-cCCeEEEEEcCCCCcccee
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT--KIFAG-YNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~-~d~~i~v~d~~~~~~~~~~  210 (304)
                       +.+|..+++|+.|+.+++||+.+++. ..+..|..     +|.++.|-+...  .|++| -|.+|+.||.|... +.. 
T Consensus        81 -sddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~-----pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~-  151 (347)
T KOG0647|consen   81 -SDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDA-----PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVA-  151 (347)
T ss_pred             -ccCCceEEeeccCCceEEEEccCCCe-eeeeeccc-----ceeEEEEecCCCcceeEecccccceeecccCCCC-eee-
Confidence             77999999999999999999999954 44555555     899999987654  66776 99999999999632 111 


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec--cccCCeEEEEECCCCcEEEEeeccCC
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDP  288 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~d~  288 (304)
                        .+     .....++++..-   ..+++++..++.|.+|+++++.......  .-+-.+++++..+|....+.|+ -+|
T Consensus       152 --t~-----~LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs-iEG  220 (347)
T KOG0647|consen  152 --TL-----QLPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS-IEG  220 (347)
T ss_pred             --ee-----eccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee-ecc
Confidence              11     122345665542   2388999999999999998764322211  1223578899888888788899 999


Q ss_pred             eEEEEecccc
Q 022019          289 YILCWDLRKA  298 (304)
Q Consensus       289 ~i~vwd~~~~  298 (304)
                      .+-+..+..+
T Consensus       221 rv~iq~id~~  230 (347)
T KOG0647|consen  221 RVAIQYIDDP  230 (347)
T ss_pred             eEEEEecCCC
Confidence            9999988875

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=1.8e-21  Score=154.92  Aligned_cols=260  Identities=16%  Similarity=0.216  Sum_probs=177.6

Q ss_pred             hhhcHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccc
Q 022019           19 TEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV   98 (304)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~   98 (304)
                      +.....+..+....+|++..   .........+++.++.+|.++|.|++..+++..+++|+-||+|+.|++..+.-....
T Consensus       306 ep~lit~sed~~lk~WnLqk---~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds  382 (577)
T KOG0642|consen  306 EPVLITASEDGTLKLWNLQK---AKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDS  382 (577)
T ss_pred             CCeEEEeccccchhhhhhcc---cCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccc
Confidence            33444566777777776522   222223334667789999999999999999999999999999999988633222111


Q ss_pred             ccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEE
Q 022019           99 NACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS  178 (304)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~  178 (304)
                      .       ..........+|...++.+++       ++....|++++.||++++|+.....+ .++......+   ...+
T Consensus       383 ~-------dp~vl~~~l~Ghtdavw~l~~-------s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g---~Pls  444 (577)
T KOG0642|consen  383 Y-------DPSVLSGTLLGHTDAVWLLAL-------SSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG---YPLS  444 (577)
T ss_pred             c-------Ccchhccceeccccceeeeee-------cccccceeeecCCceEEeeccCCcCc-cccCCccccC---Ccce
Confidence            1       112233467788899988887       55666799999999999999876655 4443332211   3345


Q ss_pred             EEECCCC-cEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce
Q 022019          179 VAFNPTG-TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (304)
Q Consensus       179 i~~~~~~-~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~  256 (304)
                      +++-... .+.+++ .-+.-.++++.... .+..+.............+.-+.++| +..+.+++..|+.|+++|..++.
T Consensus       445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s-~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  445 VDRTSSRPAHSLASFRFGYTSIDDMEVVS-DLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             EeeccchhHhhhhhcccccccchhhhhhh-heeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccc
Confidence            5554433 222222 33333344443311 11111111111111123467788999 67899999999999999999999


Q ss_pred             EeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          257 LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       257 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      ++.....|...++++++.|+|.+|++++ .||.+++|.+....+++
T Consensus       523 ~l~s~~a~~~svtslai~~ng~~l~s~s-~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  523 ILHSMVAHKDSVTSLAIDPNGPYLMSGS-HDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             cchheeeccceecceeecCCCceEEeec-CCceeehhhccchheee
Confidence            9999999999999999999999999999 99999999998776654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=5.7e-21  Score=154.15  Aligned_cols=225  Identities=17%  Similarity=0.282  Sum_probs=153.1

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      +.....|.+.|..+.|.|....|++++.|.++++||+++..+..               ..+.++|...|.++||.|.  
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G---------------~~~~~GH~~SvkS~cf~~~--  155 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG---------------GRLNLGHTGSVKSECFMPT--  155 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec---------------ceeecccccccchhhhccC--
Confidence            44667899999999999966789999999999999998664421               1156788899999999876  


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeee-------EEee---------------cccccccccceEE---EEECCCCcE
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLR-------CTYR---------------AYDAVDEITAAFS---VAFNPTGTK  187 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~---------------~~~~~~~~~~v~~---i~~~~~~~~  187 (304)
                          +...|++|+.||.|.|||++-....       ....               .+....+...+.+   +.+..|...
T Consensus       156 ----n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t  231 (720)
T KOG0321|consen  156 ----NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST  231 (720)
T ss_pred             ----CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce
Confidence                4458999999999999999742200       0000               0000011123333   455567777


Q ss_pred             EE-EE-cCCeEEEEEcCCCCccceeeeeeecccccc---ccceeEEEeecCCCcEEEEEecCCeEEEEecCCc--eEeEE
Q 022019          188 IF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ---AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--ELLYV  260 (304)
Q Consensus       188 l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~--~~~~~  260 (304)
                      |+ +| .|+.|+|||++......+....-......+   ...+.++..+. .|.+|++.+.|+.|++|++...  .++..
T Consensus       232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~  310 (720)
T KOG0321|consen  232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAE  310 (720)
T ss_pred             eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhh
Confidence            77 56 699999999998644332211111111112   33467777777 4455555566999999999864  36666


Q ss_pred             eccccCC--eEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          261 LHGQEGG--VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       261 ~~~~~~~--v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      +.++...  -..-..+||+.+|++|+ .|...++|.+.+.+.
T Consensus       311 ~sg~~~~sf~vks~lSpd~~~l~SgS-sd~~ayiw~vs~~e~  351 (720)
T KOG0321|consen  311 FSGKLNSSFYVKSELSPDDCSLLSGS-SDEQAYIWVVSSPEA  351 (720)
T ss_pred             ccCcccceeeeeeecCCCCceEeccC-CCcceeeeeecCccC
Confidence            6655432  12234689999999999 999999999987643

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.5e-19  Score=146.93  Aligned_cols=210  Identities=19%  Similarity=0.244  Sum_probs=162.6

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      ...--..+|.+|+|+.+.+.||.+-.||.|-+|++..+-.               ....+..+....+..++|.      
T Consensus        20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~---------------~~~vi~g~~drsIE~L~W~------   78 (691)
T KOG2048|consen   20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF---------------LEPVIHGPEDRSIESLAWA------   78 (691)
T ss_pred             EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCce---------------eeEEEecCCCCceeeEEEc------
Confidence            4445577899999999999999999999999999985321               1222444556789999993      


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                        ++..|++.+.+|.|.-||+.+++....+...+.     .|++++.+|.+..+++| .||.++.++....  .    ..
T Consensus        79 --e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg-----~IWsiai~p~~~~l~IgcddGvl~~~s~~p~--~----I~  145 (691)
T KOG2048|consen   79 --EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGG-----AIWSIAINPENTILAIGCDDGVLYDFSIGPD--K----IT  145 (691)
T ss_pred             --cCCeEEeecCCceEEEEecccCceeEEecCCCc-----ceeEEEeCCccceEEeecCCceEEEEecCCc--e----EE
Confidence              456788899999999999999998888776665     99999999999999977 8997777766542  1    12


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec--------cccCCeEEEEECCCCcEEEEeec
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--------GQEGGVTHVQFSRDGNYLYTGGR  285 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~  285 (304)
                      ....+....+.+.+++|+| .+..+++|+.||.|++||...+..+....        +...-|+++.|-.++ .|++|. 
T Consensus       146 ~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD-  222 (691)
T KOG2048|consen  146 YKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD-  222 (691)
T ss_pred             EEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec-
Confidence            2222234467899999999 77789999999999999999887766221        122347888887665 588888 


Q ss_pred             cCCeEEEEecccceee
Q 022019          286 KDPYILCWDLRKAVQV  301 (304)
Q Consensus       286 ~d~~i~vwd~~~~~~~  301 (304)
                      .-|+|.+||...+..+
T Consensus       223 S~G~V~FWd~~~gTLi  238 (691)
T KOG2048|consen  223 SAGTVTFWDSIFGTLI  238 (691)
T ss_pred             CCceEEEEcccCcchh
Confidence            8999999999888654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.87  E-value=7.2e-20  Score=149.08  Aligned_cols=223  Identities=14%  Similarity=0.231  Sum_probs=168.9

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      +++.+|...+...+      .+++|++.|.|++|+.||+.||+|+.|+.|.+|+..-..                   .+
T Consensus        34 rlliyD~ndG~llq------tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-------------------~L   88 (1081)
T KOG1538|consen   34 RLLVYDTSDGTLLQ------PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-------------------IL   88 (1081)
T ss_pred             EEEEEeCCCccccc------ccccccceEEEEEEccCCceeccCCCceeEEEecccccc-------------------ee
Confidence            56677777776666      788999999999999999999999999999999865322                   25


Q ss_pred             EeecCCeEEEEeecCcc--------------------------------ceeCCCccEEEEEeCCCCEEEEEcCCCeeeE
Q 022019          115 VVTEGESVYDFCWFPHM--------------------------------SASDPTSCVFASTTRDHPIHLWDATTGLLRC  162 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~--------------------------------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  162 (304)
                      ...|+..+.++.|+|..                                .+++.||++++.|-.+|+|.+-+- .++...
T Consensus        89 kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~  167 (1081)
T KOG1538|consen   89 KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKV  167 (1081)
T ss_pred             eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcce
Confidence            56677777777776631                                355779999999999999999874 455444


Q ss_pred             EeecccccccccceEEEEECCCC-----cEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCc
Q 022019          163 TYRAYDAVDEITAAFSVAFNPTG-----TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG  236 (304)
Q Consensus       163 ~~~~~~~~~~~~~v~~i~~~~~~-----~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  236 (304)
                      .+.-++  +..++|++++|+|..     ..+++. -..++.+|.+...         .........-...|+.+.| +|.
T Consensus       168 ~I~Rpg--g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~---------~Igk~r~L~FdP~CisYf~-NGE  235 (1081)
T KOG1538|consen  168 KIERPG--GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK---------QIGKDRALNFDPCCISYFT-NGE  235 (1081)
T ss_pred             EEeCCC--CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---------eecccccCCCCchhheecc-CCc
Confidence            444433  233489999999963     345543 6677778777531         1111122223356889999 788


Q ss_pred             EEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       237 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      +++.|+.|+.+++|- +.|-.+.++-....+|+.+...|++.+++.|+ .||+|-.|++-.
T Consensus       236 y~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GC-qDGTiACyNl~f  294 (1081)
T KOG1538|consen  236 YILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGC-QDGTIACYNLIF  294 (1081)
T ss_pred             EEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEE-ccCeeehhhhHH
Confidence            999999999999997 46777777776788999999999999999999 999999998743

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=7.6e-20  Score=142.42  Aligned_cols=205  Identities=17%  Similarity=0.175  Sum_probs=154.6

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      .-.++|++|.|+|....|++|+.||+++||.++...- .             ... -..-...++.+.+|       .|+
T Consensus       211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-~-------------~lq-S~~l~~fPi~~a~f-------~p~  268 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-P-------------KLQ-SIHLEKFPIQKAEF-------APN  268 (514)
T ss_pred             cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccC-h-------------hhe-eeeeccCccceeee-------cCC
Confidence            3467899999999999999999999999999873311 1             111 11122356666666       668


Q ss_pred             cc-EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCccceeeeeee
Q 022019          138 SC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       138 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      |. .+++++....++.||+.+.+....-+....  ....+..+..+|++++|+ .|..|.|.+....+..    .+..  
T Consensus       269 G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~--e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e----li~s--  340 (514)
T KOG2055|consen  269 GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGV--EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE----LITS--  340 (514)
T ss_pred             CceEEEecccceEEEEeeccccccccccCCCCc--ccchhheeEecCCCCeEEEcccCceEEeehhhhhh----hhhe--
Confidence            87 899999999999999988776544333221  123677899999999999 6799999999887631    1111  


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC-CeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG-GVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                         ....+.+..++|+. ++..|++++.+|.|.+||++...++..+....+ .-++++.+++|.|||+|+ ..|.|.|||
T Consensus       341 ---~KieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd  415 (514)
T KOG2055|consen  341 ---FKIEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS-DSGIVNIYD  415 (514)
T ss_pred             ---eeeccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc-CcceEEEec
Confidence               12356699999998 667888888899999999999999988873221 236788889999999999 999999999


Q ss_pred             ccc
Q 022019          295 LRK  297 (304)
Q Consensus       295 ~~~  297 (304)
                      ..+
T Consensus       416 ~~s  418 (514)
T KOG2055|consen  416 GNS  418 (514)
T ss_pred             cch
Confidence            654

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.87  E-value=2.2e-20  Score=155.08  Aligned_cols=157  Identities=17%  Similarity=0.252  Sum_probs=130.9

Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCcccee
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~  210 (304)
                      ++.++.|++.+.|+..|.|-+|++.+|-....+..  ...|..+|++++.+.-++.++ +|.+|-+++||+....     
T Consensus       454 v~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~--~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-----  526 (910)
T KOG1539|consen  454 VCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD--SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-----  526 (910)
T ss_pred             EEEeccCceEEEeccCCeEEEEEcccCeeeccccc--CccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-----
Confidence            45678899999999999999999999987777631  123444999999999888888 5599999999997631     


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeE
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI  290 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i  290 (304)
                         +... -.-...+.++..+. ...+++++..|-.|+++|..+.+.+..|.+|...|++++|||||++|++++ .|++|
T Consensus       527 ---l~~~-l~l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas-mD~tI  600 (910)
T KOG1539|consen  527 ---LKKS-LRLGSSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS-MDSTI  600 (910)
T ss_pred             ---eeee-eccCCCcceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee-cCCcE
Confidence               1111 11234477888888 667899999999999999999999999999999999999999999999999 99999


Q ss_pred             EEEecccceee
Q 022019          291 LCWDLRKAVQV  301 (304)
Q Consensus       291 ~vwd~~~~~~~  301 (304)
                      ++||+-++.++
T Consensus       601 r~wDlpt~~lI  611 (910)
T KOG1539|consen  601 RTWDLPTGTLI  611 (910)
T ss_pred             EEEeccCccee
Confidence            99999998765

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.6e-20  Score=144.19  Aligned_cols=224  Identities=13%  Similarity=0.184  Sum_probs=167.0

Q ss_pred             eeeecCCCcccccccceeeeecCC-CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIP-NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+.||+...+.....    ...++ ...+.....+|++++|+..+..|-|.|....+++....+                
T Consensus       282 ~ysyDle~ak~~k~~----~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~----------------  341 (514)
T KOG2055|consen  282 LYSYDLETAKVTKLK----PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF----------------  341 (514)
T ss_pred             EEEeecccccccccc----CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee----------------
Confidence            456777655444321    22233 356778899999999999999999999988777654332                


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  193 (304)
                        .-...|.+++|       +.+++.|++++.+|.|.+||++...+...+...+..    .-++++.++++.++|+| ..
T Consensus       342 --KieG~v~~~~f-------sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~~  408 (514)
T KOG2055|consen  342 --KIEGVVSDFTF-------SSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGSDS  408 (514)
T ss_pred             --eeccEEeeEEE-------ecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEeccCc
Confidence              23367888887       678899999999999999999999888888765532    34678888999999988 88


Q ss_pred             CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec--CCeEEEEecCCceEeEEeccc---cCCe
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--SQTSAIYREDNMELLYVLHGQ---EGGV  268 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~---~~~v  268 (304)
                      |-|.|||..+.-...  ...+..........|+++.|+| +..+||.+|.  ...+++..+.+......+...   -+.|
T Consensus       409 GiVNIYd~~s~~~s~--~PkPik~~dNLtt~Itsl~Fn~-d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v  485 (514)
T KOG2055|consen  409 GIVNIYDGNSCFAST--NPKPIKTVDNLTTAITSLQFNH-DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV  485 (514)
T ss_pred             ceEEEeccchhhccC--CCCchhhhhhhheeeeeeeeCc-chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence            999999975421100  0111111233445699999999 7788888876  567999998887777666533   2469


Q ss_pred             EEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          269 THVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       269 ~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      +|++|+|.|.+|+.|. .+|.+.+|.+.
T Consensus       486 tc~aFSP~sG~lAvGN-e~grv~l~kL~  512 (514)
T KOG2055|consen  486 TCMAFSPNSGYLAVGN-EAGRVHLFKLH  512 (514)
T ss_pred             EEEEecCCCceEEeec-CCCceeeEeec
Confidence            9999999999999999 99999999874

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.86  E-value=4.3e-19  Score=139.87  Aligned_cols=232  Identities=18%  Similarity=0.257  Sum_probs=158.9

Q ss_pred             ccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccccc------c-
Q 022019           31 EYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS------L-  103 (304)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~------~-  103 (304)
                      +....+..|+....+...      ....|++.|.+++...+|.+ ++|+.|+.|..||-. -....+...+.      . 
T Consensus       264 DS~G~i~Iw~~~~~~~~k------~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv  335 (626)
T KOG2106|consen  264 DSGGNILIWSKGTNRISK------QVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTV  335 (626)
T ss_pred             cCCceEEEEeCCCceEEe------EeeecCCceEEEEEecCccE-eecCccceEEecccc-ccccccccCchhcCCeeEE
Confidence            344456677763333222      33389999999999999965 459999999999932 11111111000      0 


Q ss_pred             cc-----------------cCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeec
Q 022019          104 AK-----------------DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA  166 (304)
Q Consensus       104 ~~-----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  166 (304)
                      ..                 .-..........|+.....++-       .|+.+.+++++.|+.+++|+  ..++..+...
T Consensus       336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~-------hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~  406 (626)
T KOG2106|consen  336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT-------HPSKNQLLTCGQDKHVRLWN--DHKLEWTKII  406 (626)
T ss_pred             ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc-------CCChhheeeccCcceEEEcc--CCceeEEEEe
Confidence            00                 0011122233444555555544       67888999999999999999  4455544444


Q ss_pred             ccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC
Q 022019          167 YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ  245 (304)
Q Consensus       167 ~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  245 (304)
                      ..      ++.++.|+|.| .+++| ..|...+.|.++.        .+...... ..++++++|+| ++.+||+|+.|+
T Consensus       407 ~d------~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~--------~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~  469 (626)
T KOG2106|consen  407 ED------PAECADFHPSG-VVAVGTATGRWFVLDTETQ--------DLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDN  469 (626)
T ss_pred             cC------ceeEeeccCcc-eEEEeeccceEEEEecccc--------eeEEEEec-CCceEEEEEcC-CCCEEEEecCCC
Confidence            33      78899999999 77776 9999999999862        11111122 67799999999 788999999999


Q ss_pred             eEEEEecCCc-eEeEEec-cccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          246 TSAIYREDNM-ELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       246 ~i~i~d~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      .|+||.+... ....... .+..+|+.+.|++|+++|.+-+ .|-.|..|....
T Consensus       470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S-~d~eiLyW~~~~  522 (626)
T KOG2106|consen  470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS-GDYEILYWKPSE  522 (626)
T ss_pred             eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc-CceEEEEEcccc
Confidence            9999988654 3322222 2347999999999999999999 899999995443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=6.1e-20  Score=149.54  Aligned_cols=255  Identities=18%  Similarity=0.313  Sum_probs=179.9

Q ss_pred             hhhcHHhhccccccCcceeeecCCC-------------ccccccccee-------eeecCCCCceeEEEEcCCCCeEEEe
Q 022019           19 TEVTEAAQENQQEYTWPLIRFDVPP-------------HRTYHFYNQF-------RTSSIPNNFLKGIKWSPDGSSFLTS   78 (304)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-------~~~~~h~~~V~~i~~s~~~~~l~s~   78 (304)
                      .-+..++++|.-.++|++..++...             ...+.....+       ..+.||.+.|.++.|.|.+..|+++
T Consensus       206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA  285 (764)
T KOG1063|consen  206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA  285 (764)
T ss_pred             cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheec
Confidence            4456778899999999998888322             0011111111       2345999999999999999999999


Q ss_pred             cCCCeEEEeeCCCCCCccccccccccccCCccceEEEee----cCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEE
Q 022019           79 SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT----EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWD  154 (304)
Q Consensus        79 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  154 (304)
                      +.|.++.+|...+..-.              .+....++    .....+...|       +|+++.+++-+..|-.++|.
T Consensus       286 SaDksmiiW~pd~~tGi--------------Wv~~vRlGe~gg~a~GF~g~lw-------~~n~~~ii~~g~~Gg~hlWk  344 (764)
T KOG1063|consen  286 SADKSMIIWKPDENTGI--------------WVDVVRLGEVGGSAGGFWGGLW-------SPNSNVIIAHGRTGGFHLWK  344 (764)
T ss_pred             ccCcceEEEecCCccce--------------EEEEEEeecccccccceeeEEE-------cCCCCEEEEecccCcEEEEe
Confidence            99999999987644211              11111111    1123566666       77888999999999999998


Q ss_pred             cCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCcccee-----------------------
Q 022019          155 ATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK-----------------------  210 (304)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~-----------------------  210 (304)
                      ......-....  ...+|...|.+++|+|.|.+|+ +|.|-+-++|-.-..+.....                       
T Consensus       345 t~d~~~w~~~~--~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F  422 (764)
T KOG1063|consen  345 TKDKTFWTQEP--VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF  422 (764)
T ss_pred             ccCccceeecc--ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence            33222111111  1225666999999999999998 678888877643200000000                       


Q ss_pred             ------------------------------------------------------------------eeee----------
Q 022019          211 ------------------------------------------------------------------YSTL----------  214 (304)
Q Consensus       211 ------------------------------------------------------------------~~~~----------  214 (304)
                                                                                        ....          
T Consensus       423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e  502 (764)
T KOG1063|consen  423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE  502 (764)
T ss_pred             eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence                                                                              0000          


Q ss_pred             ---------------eccccccccceeEEEeecCCCcEEEEEecCC-----eEEEEecCCceEeEEeccccCCeEEEEEC
Q 022019          215 ---------------KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----TSAIYREDNMELLYVLHGQEGGVTHVQFS  274 (304)
Q Consensus       215 ---------------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  274 (304)
                                     .....+|...|++++.+| .++++|+++...     .|++|+..+...+..+.+|.-.|+.++||
T Consensus       503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS  581 (764)
T KOG1063|consen  503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS  581 (764)
T ss_pred             CChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence                           013456777799999999 888999998653     59999999999999999999999999999


Q ss_pred             CCCcEEEEeeccCCeEEEEecccc
Q 022019          275 RDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       275 ~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      |||++|++++ .|.++.+|+....
T Consensus       582 pdg~~LLsvs-RDRt~sl~~~~~~  604 (764)
T KOG1063|consen  582 PDGRYLLSVS-RDRTVSLYEVQED  604 (764)
T ss_pred             CCCcEEEEee-cCceEEeeeeecc
Confidence            9999999999 9999999988554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.86  E-value=2.9e-19  Score=135.59  Aligned_cols=225  Identities=16%  Similarity=0.189  Sum_probs=158.1

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccc--------------ccccc-cccCCccceEEEeecCCeEEE
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV--------------NACSL-AKDQDSYEASLVVTEGESVYD  124 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~~v~~  124 (304)
                      ...+..+.|+.+...|..|+.|| -++|+..........              ..... ...+......+.......+..
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe   83 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICE   83 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEE
Confidence            34577778998888888888887 478876543221000              00000 011112222233333333444


Q ss_pred             EeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE--EE-cCCeEEEEEc
Q 022019          125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AG-YNKSVRVFDV  201 (304)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~--~~-~d~~i~v~d~  201 (304)
                      +.|....+++--+.+.|+++-++. |+|||+++.+.+.++....  .+...+..+++++.+.+++  .+ ..|.|.+||+
T Consensus        84 ~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~--~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~  160 (391)
T KOG2110|consen   84 IFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTP--PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT  160 (391)
T ss_pred             EecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccC--CCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence            444333333334666788777665 9999999999888876542  2233677788888888998  45 7899999999


Q ss_pred             CCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCe-EEEEecCCceEeEEecccc--CCeEEEEECCCCc
Q 022019          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-SAIYREDNMELLYVLHGQE--GGVTHVQFSRDGN  278 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~  278 (304)
                      ..-        ........|.+.+.+++|+| +|.+||++|+.|+ ||||.+.+++.+.+|+...  ..|.+++|+|++.
T Consensus       161 ~nl--------~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~  231 (391)
T KOG2110|consen  161 INL--------QPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ  231 (391)
T ss_pred             ccc--------eeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC
Confidence            762        22233368999999999999 8889999999998 7999999999999998433  3689999999999


Q ss_pred             EEEEeeccCCeEEEEecccc
Q 022019          279 YLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       279 ~l~~~~~~d~~i~vwd~~~~  298 (304)
                      +|++.+ ..++|++|.++..
T Consensus       232 ~L~~sS-~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  232 FLAASS-NTETVHIFKLEKV  250 (391)
T ss_pred             eEEEec-CCCeEEEEEeccc
Confidence            999999 8999999998764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.86  E-value=3.9e-20  Score=143.82  Aligned_cols=238  Identities=14%  Similarity=0.084  Sum_probs=163.7

Q ss_pred             ccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccC
Q 022019           29 QQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ  107 (304)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  107 (304)
                      .+++...+..|++.....-.  ..+..+.+|..+|.+|.|+| +...+++.++||+|++-|++......-....      
T Consensus       205 ~GdK~G~VG~Wn~~~~~~d~--d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~------  276 (498)
T KOG4328|consen  205 VGDKGGQVGLWNFGTQEKDK--DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD------  276 (498)
T ss_pred             EccCCCcEEEEecCCCCCcc--CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC------
Confidence            34445566777773211111  12336789999999999999 5668999999999999999865331111100      


Q ss_pred             CccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCee-eEEeecccccccccceEEEEECCCCc
Q 022019          108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNPTGT  186 (304)
Q Consensus       108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~~  186 (304)
                               .....+..+.       |+.+...++.+..=|...+||++++.. ...+..|..     .|.+++++|...
T Consensus       277 ---------~d~~~fs~~d-------~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-----KI~sv~~NP~~p  335 (498)
T KOG4328|consen  277 ---------TDNIWFSSLD-------FSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-----KITSVALNPVCP  335 (498)
T ss_pred             ---------ccceeeeecc-------ccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-----ccceeecCCCCc
Confidence                     0111223333       355666677777767899999997654 344555544     899999999765


Q ss_pred             E-EEE-EcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC----CceEeEE
Q 022019          187 K-IFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED----NMELLYV  260 (304)
Q Consensus       187 ~-l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~----~~~~~~~  260 (304)
                      + +++ |.|++.+|||+|.......   . ......|...|.+..|+|.++. |++.+.|..|+|||..    ...+..+
T Consensus       336 ~~laT~s~D~T~kIWD~R~l~~K~s---p-~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~  410 (498)
T KOG4328|consen  336 WFLATASLDQTAKIWDLRQLRGKAS---P-FLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGT  410 (498)
T ss_pred             hheeecccCcceeeeehhhhcCCCC---c-ceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccce
Confidence            4 444 4999999999987543322   1 1122568888999999997776 8999999999999983    3345555


Q ss_pred             eccccC------CeEEEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          261 LHGQEG------GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       261 ~~~~~~------~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      +. |..      ......|.|+..++++|. .-..|-|+|-..++.++
T Consensus       411 I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~-~~r~IDv~~~~~~q~v~  456 (498)
T KOG4328|consen  411 IP-HNNRTGRWLTPFKAAWDPDYNLIVVGR-YPRPIDVFDGNGGQMVC  456 (498)
T ss_pred             ee-ccCcccccccchhheeCCCccEEEEec-cCcceeEEcCCCCEEee
Confidence            54 332      245578999999999998 88899999998887443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.86  E-value=5.3e-20  Score=148.64  Aligned_cols=243  Identities=16%  Similarity=0.199  Sum_probs=157.2

Q ss_pred             eeecCCCcccccccceeeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccc--ccccc-----c---cc
Q 022019           37 IRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYD--VNACS-----L---AK  105 (304)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~--~~~~~-----~---~~  105 (304)
                      ..|++.......    .+.+.||.+.|.+++|.| +...|++|+.||.|.|||+........  .....     .   ..
T Consensus       125 r~Wdvk~s~l~G----~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps  200 (720)
T KOG0321|consen  125 RPWDVKTSRLVG----GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS  200 (720)
T ss_pred             eeeeeccceeec----ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence            345555544433    124679999999999999 556899999999999999976542100  00000     0   00


Q ss_pred             cCCccceEEEeecCCe----EEEEeecCccceeCCCccEEEEEeC-CCCEEEEEcCCCeeeE------Eeeccccccccc
Q 022019          106 DQDSYEASLVVTEGES----VYDFCWFPHMSASDPTSCVFASTTR-DHPIHLWDATTGLLRC------TYRAYDAVDEIT  174 (304)
Q Consensus       106 ~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~------~~~~~~~~~~~~  174 (304)
                      ............+...    |+.+.|        .|...||+++. |+.|+|||++......      ....+.......
T Consensus       201 kp~~kr~~k~kA~s~ti~ssvTvv~f--------kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~  272 (720)
T KOG0321|consen  201 KPLKKRIRKWKAASNTIFSSVTVVLF--------KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSV  272 (720)
T ss_pred             chhhccccccccccCceeeeeEEEEE--------eccceeeeccCCCcceEEEeecccccccccCCCcccCccCccccee
Confidence            0000111111222222    333333        47778999887 9999999998754322      222222212233


Q ss_pred             ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccc--cceeEEEeecCCCcEEEEEecCCeEEEEe
Q 022019          175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA--GIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  251 (304)
                      .+.++..+..|.+++++ .|+.|++|++...+....  ..+    .++.  .....-..+| ++.++++|+.|...++|.
T Consensus       273 G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~--~~~----sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~  345 (720)
T KOG0321|consen  273 GQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV--AEF----SGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWV  345 (720)
T ss_pred             eeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch--hhc----cCcccceeeeeeecCC-CCceEeccCCCcceeeee
Confidence            67889999999998865 999999999986432111  111    1111  1122334678 778999999999999999


Q ss_pred             cCCce-EeEEeccccCCeEEEEECCCC-cEEEEeeccCCeEEEEecccce
Q 022019          252 EDNME-LLYVLHGQEGGVTHVQFSRDG-NYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       252 ~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      +.+.+ +...+.+|.-.|++++|.|.. .-+++++ +|-.+++|++.++-
T Consensus       346 vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcS-dD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  346 VSSPEAPPALLLGHTREVTTVRWLPSATTPVATCS-DDFRVKIWRLSNGL  394 (720)
T ss_pred             ecCccCChhhhhCcceEEEEEeeccccCCCceeec-cCcceEEEeccCch
Confidence            98765 566778999999999998753 3367778 99999999997653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=8.9e-20  Score=140.56  Aligned_cols=201  Identities=23%  Similarity=0.304  Sum_probs=150.4

Q ss_pred             eEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEE
Q 022019           64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS  143 (304)
Q Consensus        64 ~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  143 (304)
                      .+++|+++|..|++++.||++|||++.......                 ....|...|.++.|       +|||+.|++
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-----------------~e~~~~~eV~DL~F-------S~dgk~las  203 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-----------------EEIAHHAEVKDLDF-------SPDGKFLAS  203 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhh-----------------hhHhhcCcccccee-------CCCCcEEEE
Confidence            679999999999999999999999976443322                 22345578888877       889999999


Q ss_pred             EeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCC---c-EEEEE--cCCeEEEEEcCCCCccceeeeeeecc
Q 022019          144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG---T-KIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (304)
Q Consensus       144 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---~-~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~  217 (304)
                      .+.| ..+||+++++..+........   ......+.|+.++   . ++++.  ..+.|+.||+...... . +......
T Consensus       204 ig~d-~~~VW~~~~g~~~a~~t~~~k---~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~-~l~~~~~  277 (398)
T KOG0771|consen  204 IGAD-SARVWSVNTGAALARKTPFSK---DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-N-FLRLRKK  277 (398)
T ss_pred             ecCC-ceEEEEeccCchhhhcCCccc---chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-c-ccchhhh
Confidence            9999 899999999976665553221   1245577887766   2 33333  5677888887543221 0 0111111


Q ss_pred             ccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-cccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       218 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                       ......|++++.++ ++++++.|+.||.|.|++..+.+.+.-++ .|...|+.+.|+||.+++++.+ .|..+.|..+.
T Consensus       278 -~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svS-s~~~~~v~~l~  354 (398)
T KOG0771|consen  278 -IKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVS-SDNEAAVTKLA  354 (398)
T ss_pred             -hhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccc-cCCceeEEEEe
Confidence             11233599999999 88899999999999999999888777665 7889999999999999999998 89988888775


Q ss_pred             c
Q 022019          297 K  297 (304)
Q Consensus       297 ~  297 (304)
                      -
T Consensus       355 v  355 (398)
T KOG0771|consen  355 V  355 (398)
T ss_pred             e
Confidence            4

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.85  E-value=4.2e-19  Score=147.41  Aligned_cols=241  Identities=18%  Similarity=0.162  Sum_probs=167.3

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (304)
                      ..+.|++........     .+ .-...|+|++|+| +..++|.|+.+|.|.+||+.......           ......
T Consensus       223 ~~~vW~~~~p~~Pe~-----~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-----------~s~ls~  285 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPEL-----VL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-----------PSGLSA  285 (555)
T ss_pred             eEEEEecCCCCCceE-----EE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-----------Cccccc
Confidence            466777765532221     11 2467899999999 77789999999999999998664421           122233


Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeee-EEeecc------cccccccceEEEEECCCC-
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR-CTYRAY------DAVDEITAAFSVAFNPTG-  185 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~------~~~~~~~~v~~i~~~~~~-  185 (304)
                      ....|..++..+.|..     ++.+.-|++++.||.|..|+++.-... ......      ........+++++|.+.. 
T Consensus       286 ~~~sh~~~v~~vvW~~-----~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p  360 (555)
T KOG1587|consen  286 LEVSHSEPVTAVVWLQ-----NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP  360 (555)
T ss_pred             ccccCCcCeEEEEEec-----cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC
Confidence            5566778999999965     333456999999999999988753321 111110      011222378899999854 


Q ss_pred             cEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC-CceEeEEecc
Q 022019          186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELLYVLHG  263 (304)
Q Consensus       186 ~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~  263 (304)
                      ..+++| .+|.|.--+-...................|.++|+++.++|-...++++++ |.+++||... ...++..+..
T Consensus       361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~  439 (555)
T KOG1587|consen  361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS  439 (555)
T ss_pred             ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh
Confidence            444466 889887744332222221222333344678899999999997776777666 9999999988 7778888888


Q ss_pred             ccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       264 ~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      +...|++++|||-..-++.+...||.|.+||+...
T Consensus       440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             ccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence            88889999999988776666648999999999653

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=3.6e-20  Score=147.42  Aligned_cols=224  Identities=16%  Similarity=0.245  Sum_probs=159.4

Q ss_pred             eeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        52 ~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      .-+.+.||.+.|+|+.|+.+|.+|++|+.|-.+.|||....+.                .-.+..+|...|.++.|.|. 
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------lhsI~TgHtaNIFsvKFvP~-  104 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------LHSISTGHTANIFSVKFVPY-  104 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------eeeeecccccceeEEeeecc-
Confidence            3447889999999999999999999999999999999864332                33366678899999999884 


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCe----------eeEEeecccccccccceEEEEECCCCcE-EE-EEcCCeEEEE
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGL----------LRCTYRAYDAVDEITAAFSVAFNPTGTK-IF-AGYNKSVRVF  199 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~-~~~d~~i~v~  199 (304)
                          .+.+++++|..|..|++||+...+          ....+..     |...|..++-.|++.. +. ++.||+|+-+
T Consensus       105 ----tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~c-----ht~rVKria~~p~~PhtfwsasEDGtirQy  175 (758)
T KOG1310|consen  105 ----TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSC-----HTDRVKRIATAPNGPHTFWSASEDGTIRQY  175 (758)
T ss_pred             ----CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhh-----hhhhhhheecCCCCCceEEEecCCcceeee
Confidence                366789999999999999998521          1112222     3347888999998844 44 5699999999


Q ss_pred             EcCCCCccceeeeeee--ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc--------e----------EeE
Q 022019          200 DVHRPGRDFEKYSTLK--GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--------E----------LLY  259 (304)
Q Consensus       200 d~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~--------~----------~~~  259 (304)
                      |++.+-.+........  .......-...++..+|....+|++|+.|-..++||.+..        .          ++.
T Consensus       176 DiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~  255 (758)
T KOG1310|consen  176 DIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVR  255 (758)
T ss_pred             cccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhh
Confidence            9997432221110000  0001112236789999999999999999999999994311        1          122


Q ss_pred             Eec-ccc-----------CCeEEEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          260 VLH-GQE-----------GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       260 ~~~-~~~-----------~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      .+. +|-           ..++.+.|+|+|.-|+..- ....|+++|+..++...
T Consensus       256 yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~-~gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  256 YFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSW-GGEHVYLFDVNEDKSPT  309 (758)
T ss_pred             eecCccccCcccccccceeeeEEEEECCCCcEEEEee-CCeEEEEEeecCCCCce
Confidence            221 221           1257788999998777665 56789999999887654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=1.9e-19  Score=141.70  Aligned_cols=200  Identities=15%  Similarity=0.232  Sum_probs=150.7

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      +-+||+......      +.+++|.+.|+++.++-...|||+++..|.|.|..+.++....+                +.
T Consensus       103 Vkiwdl~~kl~h------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~----------------f~  160 (673)
T KOG4378|consen  103 VKIWDLRAKLIH------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT----------------FT  160 (673)
T ss_pred             eeehhhHHHHHh------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccc----------------ee
Confidence            345665533222      36789999999999999999999999999999999987644322                22


Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE--EEcC
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYN  193 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~--~~~d  193 (304)
                      ...+..|.-+.|+|.      ...+|.+++++|.|.+||+....+...+..    .|..+...|+|+|.+..|+  +|.|
T Consensus       161 ~~sgqsvRll~ys~s------kr~lL~~asd~G~VtlwDv~g~sp~~~~~~----~HsAP~~gicfspsne~l~vsVG~D  230 (673)
T KOG4378|consen  161 IDSGQSVRLLRYSPS------KRFLLSIASDKGAVTLWDVQGMSPIFHASE----AHSAPCRGICFSPSNEALLVSVGYD  230 (673)
T ss_pred             cCCCCeEEEeecccc------cceeeEeeccCCeEEEEeccCCCcccchhh----hccCCcCcceecCCccceEEEeccc
Confidence            233456667777442      234678889999999999987666544321    2334888999999876666  5799


Q ss_pred             CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-eEeEEeccccCCeEEEE
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQ  272 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~  272 (304)
                      ..|.+||++.... .   ..     .....+...++|.+ +|.+|++|+..|.|..||++.. .|+..+..|...|++++
T Consensus       231 kki~~yD~~s~~s-~---~~-----l~y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va  300 (673)
T KOG4378|consen  231 KKINIYDIRSQAS-T---DR-----LTYSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA  300 (673)
T ss_pred             ceEEEeecccccc-c---ce-----eeecCCcceeeecC-CceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence            9999999985211 1   11     12345688999999 8899999999999999999864 58999999999999999


Q ss_pred             ECCCC
Q 022019          273 FSRDG  277 (304)
Q Consensus       273 ~~~~~  277 (304)
                      |-|.-
T Consensus       301 fq~s~  305 (673)
T KOG4378|consen  301 FQPSP  305 (673)
T ss_pred             eeecc
Confidence            97654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.84  E-value=1.3e-19  Score=131.71  Aligned_cols=150  Identities=17%  Similarity=0.305  Sum_probs=114.0

Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeeccc-----ccccccceEEEEECCCCcE-EEEEcCCeEEEEEcCCCCccceeeee
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYD-----AVDEITAAFSVAFNPTGTK-IFAGYNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~v~~i~~~~~~~~-l~~~~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      ++++|.++|.+.+||+.++.....++...     ...+..+|.++.|.+.-.. +..|.+..+..|.+.........-..
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e  246 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE  246 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence            47788899999999999875443332211     1234558999999875433 33457788889988754222111111


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEE
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW  293 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vw  293 (304)
                      .    .-....+..+..-| +++++|+++.|+.||||+.++..++..++-|...|.+++|+|+...+|+++ .|++|.+|
T Consensus       247 ~----~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas-kD~rISLW  320 (323)
T KOG0322|consen  247 I----TLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS-KDARISLW  320 (323)
T ss_pred             E----EecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc-CCceEEee
Confidence            1    11123377889999 888999999999999999999999999999999999999999999999999 99999999


Q ss_pred             ec
Q 022019          294 DL  295 (304)
Q Consensus       294 d~  295 (304)
                      ++
T Consensus       321 kL  322 (323)
T KOG0322|consen  321 KL  322 (323)
T ss_pred             ec
Confidence            86

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.6e-19  Score=134.50  Aligned_cols=197  Identities=13%  Similarity=0.193  Sum_probs=145.0

Q ss_pred             CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEE
Q 022019           73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHL  152 (304)
Q Consensus        73 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  152 (304)
                      ..+|++-..|.|++||..++.....+....                 ..+..+.|..     ......+.+|+.||+|++
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~-----------------~~~N~vrf~~-----~ds~h~v~s~ssDG~Vr~   98 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP-----------------ATTNGVRFIS-----CDSPHGVISCSSDGTVRL   98 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCC-----------------CcccceEEec-----CCCCCeeEEeccCCeEEE
Confidence            568888889999999999876655444332                 3333444421     114457999999999999


Q ss_pred             EEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-----cCCeEEEEEcCCCCccceeeeeeeccccccccceeE
Q 022019          153 WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-----YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA  227 (304)
Q Consensus       153 ~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-----~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~  227 (304)
                      ||++.......+......  ..+..+++.+-.++.+++|     .+..|.+||+|.....      +......|...|++
T Consensus        99 wD~Rs~~e~a~~~~~~~~--~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~------l~~~~eSH~DDVT~  170 (376)
T KOG1188|consen   99 WDIRSQAESARISWTQQS--GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL------LRQLNESHNDDVTQ  170 (376)
T ss_pred             EEeecchhhhheeccCCC--CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch------hhhhhhhccCccee
Confidence            999976555444433221  2266778877778888865     4678999999985432      33334789999999


Q ss_pred             EEeecCCCcEEEEEecCCeEEEEecCCce----EeEEeccccCCeEEEEECCCC-cEEEEeeccCCeEEEEecccceee
Q 022019          228 IAFSPTHTGMLAIGSYSQTSAIYREDNME----LLYVLHGQEGGVTHVQFSRDG-NYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       228 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      ++|+|.+..+|++||.||.|.|||+....    ++..+. |...|..+.|..++ +.|.+-+ ..+...+|+++.+.+.
T Consensus       171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~~~~ykrI~clT-H~Etf~~~ele~~~~~  247 (376)
T KOG1188|consen  171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWLSKKYKRIMCLT-HMETFAIYELEDGSEE  247 (376)
T ss_pred             EEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeeecCCcceEEEEE-ccCceeEEEccCCChh
Confidence            99999999999999999999999997543    333443 77789999998877 4577777 8999999999988654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=9.7e-19  Score=130.87  Aligned_cols=213  Identities=21%  Similarity=0.327  Sum_probs=156.3

Q ss_pred             CCCCceeEEEEcCC----CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           58 IPNNFLKGIKWSPD----GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        58 ~h~~~V~~i~~s~~----~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      .|...-..++|+-+    ..++|.|+.-|.|+|.|+.+++...                 ...+|+..|..+.++|.   
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~-----------------~~~ghG~sINeik~~p~---  146 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK-----------------NYRGHGGSINEIKFHPD---  146 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc-----------------ceeccCccchhhhcCCC---
Confidence            47777888888753    3488999999999999998654422                 45678899999999876   


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCcc-----
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRD-----  207 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~-----  207 (304)
                         ..+++++++.|.+|++|++++..++..+-+..  +|...|.++.|+++|.+|+ +|.|..+++|++..++-.     
T Consensus       147 ---~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e--gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~  221 (385)
T KOG1034|consen  147 ---RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE--GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL  221 (385)
T ss_pred             ---CCcEEEEecCCceEEEEeccCCeEEEEecccc--cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhh
Confidence               44699999999999999999999988876554  4666999999999999999 569999999999732100     


Q ss_pred             ------------ce----eeeee--------------------------------ec-----c----------------c
Q 022019          208 ------------FE----KYSTL--------------------------------KG-----N----------------K  218 (304)
Q Consensus       208 ------------~~----~~~~~--------------------------------~~-----~----------------~  218 (304)
                                  +.    .+..+                                ..     .                .
T Consensus       222 s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~  301 (385)
T KOG1034|consen  222 SITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEF  301 (385)
T ss_pred             hcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEe
Confidence                        00    00000                                00     0                0


Q ss_pred             cccc--cceeEEEeecCCCcEEEEEecCCeEEEEecCCceEe--EEec--cccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          219 EGQA--GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL--YVLH--GQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       219 ~~~~--~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                      .-..  .+....+|+| -+++|+.|...|.|++||+++..+.  .++.  .....|...+|+.||..|+..+ +|++|.-
T Consensus       302 ~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc-dd~~Vwr  379 (385)
T KOG1034|consen  302 DYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC-DDGTVWR  379 (385)
T ss_pred             ccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEe-CCCcEEE
Confidence            0000  0122345566 5678999999999999999987653  2222  1234799999999999999999 9999999


Q ss_pred             Eeccc
Q 022019          293 WDLRK  297 (304)
Q Consensus       293 wd~~~  297 (304)
                      ||..+
T Consensus       380 wdrv~  384 (385)
T KOG1034|consen  380 WDRVS  384 (385)
T ss_pred             EEeec
Confidence            98643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.83  E-value=4.5e-18  Score=135.89  Aligned_cols=187  Identities=13%  Similarity=0.188  Sum_probs=131.5

Q ss_pred             CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE-EEEeCCCCE
Q 022019           72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPI  150 (304)
Q Consensus        72 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i  150 (304)
                      +..+++++.|+.|++||+.+++...                  .......+..+.|       +|+++.+ ++++.++.|
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~------------------~~~~~~~~~~l~~-------~~dg~~l~~~~~~~~~v   55 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTR------------------TFPVGQRPRGITL-------SKDGKLLYVCASDSDTI   55 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEE------------------EEECCCCCCceEE-------CCCCCEEEEEECCCCeE
Confidence            3578899999999999997653221                  1111122334444       7888866 566788999


Q ss_pred             EEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEE
Q 022019          151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI  228 (304)
Q Consensus       151 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~  228 (304)
                      ++||+.+++....+..+.      .+..+.|+|+++.+++ + .++.+++||++...    .+..+.     ....+.++
T Consensus        56 ~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~----~~~~~~-----~~~~~~~~  120 (300)
T TIGR03866        56 QVIDLATGEVIGTLPSGP------DPELFALHPNGKILYIANEDDNLVTVIDIETRK----VLAEIP-----VGVEPEGM  120 (300)
T ss_pred             EEEECCCCcEEEeccCCC------CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe----EEeEee-----CCCCcceE
Confidence            999999887766554332      3467899999998774 4 68999999997631    111111     12235789


Q ss_pred             EeecCCCcEEEEEecCC-eEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          229 AFSPTHTGMLAIGSYSQ-TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       229 ~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      +|+| ++.++++++.++ .+.+||.++++.+..+.. ......++|+|+|++|++++..++.|++||+++++.
T Consensus       121 ~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~  191 (300)
T TIGR03866       121 AVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV  191 (300)
T ss_pred             EECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence            9999 677788777765 577889988877665542 334578999999998866553699999999998764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.4e-18  Score=145.90  Aligned_cols=199  Identities=16%  Similarity=0.253  Sum_probs=149.1

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      .-.-++++++|+.+|+++|.||.|-.|++-++.+...                 .....+|..+|.++.|       +|+
T Consensus        94 Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-----------------~~~lrgh~apVl~l~~-------~p~  149 (933)
T KOG1274|consen   94 RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-----------------EKVLRGHDAPVLQLSY-------DPK  149 (933)
T ss_pred             eeeccceEEEEecCCcEEEeecCceeEEEEeccccch-----------------heeecccCCceeeeeE-------cCC
Confidence            3456799999999999999999999999999875432                 2255567789999988       779


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEeeccccc---ccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCccceeeee
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV---DEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      +++||+.+-||.|++||+.++....++......   .....+..++|+|++..++ .+.|+.|++|+.......+    .
T Consensus       150 ~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f----~  225 (933)
T KOG1274|consen  150 GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF----K  225 (933)
T ss_pred             CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehe----e
Confidence            999999999999999999998877666543221   1123677899999965555 6799999999987643222    2


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                      +..  ..+...+..+.|+| .|.+||+++.||.|.|||.++...    ......|++++|.|+..-|-... ..|...+
T Consensus       226 Lr~--~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~-~~g~~~~  296 (933)
T KOG1274|consen  226 LRD--KLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLIT-ALGTLGV  296 (933)
T ss_pred             ecc--cccccceEEEEEcC-CCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEe-ecccccc
Confidence            221  23344489999999 799999999999999999987222    22345799999999987654443 3444333

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.83  E-value=1.4e-18  Score=128.02  Aligned_cols=205  Identities=16%  Similarity=0.224  Sum_probs=155.0

Q ss_pred             cCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC
Q 022019           57 SIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        57 ~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (304)
                      ..+..++++..|+. +.+++.+++-|-+..|||+.++.              ...+...++.|...|++++|...     
T Consensus       147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~--------------~~~vkTQLIAHDKEV~DIaf~~~-----  207 (364)
T KOG0290|consen  147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV--------------SGTVKTQLIAHDKEVYDIAFLKG-----  207 (364)
T ss_pred             cccCCcccccccccCCcceeEeecccCeEEEEEEeecc--------------ccceeeEEEecCcceeEEEeccC-----
Confidence            45678999999998 88899999999999999998651              22334467789999999999532     


Q ss_pred             CCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCC-cEEE-EE-cCCeEEEEEcCCCCccceeee
Q 022019          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIF-AG-YNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       136 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~-~~-~d~~i~v~d~~~~~~~~~~~~  212 (304)
                       ..+.||+++.||++++||++..+....+-...  ....+...++|++.. +++| .+ ....|.|.|+|.+...     
T Consensus       208 -s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p--~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp-----  279 (364)
T KOG0290|consen  208 -SRDVFASVGADGSVRMFDLRSLEHSTIIYEDP--SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP-----  279 (364)
T ss_pred             -ccceEEEecCCCcEEEEEecccccceEEecCC--CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc-----
Confidence             33589999999999999999765433222111  112378899999854 6666 34 6788999999987433     


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc------eEeEEeccccCCeEEEEECC-CCcEEEEeec
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM------ELLYVLHGQEGGVTHVQFSR-DGNYLYTGGR  285 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  285 (304)
                        ...+.+|.+.|.+++|.|.....|++++.|..+.|||+...      .++..+. ..+.|..+.|++ .+.+|+.+. 
T Consensus       280 --va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-  355 (364)
T KOG0290|consen  280 --VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-  355 (364)
T ss_pred             --eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-
Confidence              33448899999999999988899999999999999999753      2444444 467899999996 566787775 


Q ss_pred             cCCeEEEE
Q 022019          286 KDPYILCW  293 (304)
Q Consensus       286 ~d~~i~vw  293 (304)
                       ++++.+.
T Consensus       356 -~kkleiL  362 (364)
T KOG0290|consen  356 -GKKLEIL  362 (364)
T ss_pred             -cCeeeEE
Confidence             5555543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.83  E-value=1.8e-19  Score=146.02  Aligned_cols=211  Identities=17%  Similarity=0.353  Sum_probs=150.5

Q ss_pred             CCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           60 NNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        60 ~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      ...|+++.|.| |...||.++.||.|++|.+..+.........          ..+...|...|+.+.|+|-..      
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP----------e~~lt~h~eKI~slRfHPLAa------  690 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP----------EKILTIHGEKITSLRFHPLAA------  690 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc----------ceeeecccceEEEEEecchhh------
Confidence            45699999999 8889999999999999999877654332222          236677889999999998743      


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCccceeeeeeecc
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGN  217 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~  217 (304)
                      ..|++++.|.+|++||+.+++....+..|..     .|.+++|+|+|+.++ ++.||+|++|..+........-..... 
T Consensus       691 dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd-----qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg-  764 (1012)
T KOG1445|consen  691 DVLAVASYDSTIELWDLANAKLYSRLVGHTD-----QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVG-  764 (1012)
T ss_pred             hHhhhhhccceeeeeehhhhhhhheeccCcC-----ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCcc-
Confidence            3799999999999999999988888887765     999999999999999 689999999999876544332222211 


Q ss_pred             ccccccceeEEEeecCCCcEEEEEecC----CeEEEEecCCc--eEeEEeccc-cCCeEEEEECCCCcEEEEeeccCCeE
Q 022019          218 KEGQAGIMSAIAFSPTHTGMLAIGSYS----QTSAIYREDNM--ELLYVLHGQ-EGGVTHVQFSRDGNYLYTGGRKDPYI  290 (304)
Q Consensus       218 ~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~i~d~~~~--~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~d~~i  290 (304)
                           ..-..+.|.= +++++++.+.|    ..|.+||..+.  .++.+..-. ...+.--.+.+|...|+..|..|..|
T Consensus       765 -----tRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v  838 (1012)
T KOG1445|consen  765 -----TRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFV  838 (1012)
T ss_pred             -----CcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceE
Confidence                 1123456666 55566665554    45888987653  333333211 11222334566666655444489999


Q ss_pred             EEEecccc
Q 022019          291 LCWDLRKA  298 (304)
Q Consensus       291 ~vwd~~~~  298 (304)
                      .+|++-..
T Consensus       839 ~~yEv~~e  846 (1012)
T KOG1445|consen  839 NMYEVIYE  846 (1012)
T ss_pred             EEEEecCC
Confidence            99987543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.82  E-value=2.3e-18  Score=128.42  Aligned_cols=211  Identities=19%  Similarity=0.238  Sum_probs=161.8

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      -..+|+|.+|++|+..+|.+.....|-||.......              .........|...|+.++|       +|..
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------w~~~htls~Hd~~vtgvdW-------ap~s   67 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------WEPAHTLSEHDKIVTGVDW-------APKS   67 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------ceeceehhhhCcceeEEee-------cCCC
Confidence            356799999999999999999999999998875432              1122244567788999999       6678


Q ss_pred             cEEEEEeCCCCEEEEEc-CCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeec
Q 022019          139 CVFASTTRDHPIHLWDA-TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~  216 (304)
                      +.|++|+.|..-++|.. ..++...++....   ....++++.|+|.++.+++| ....|.||-++...    .....+.
T Consensus        68 nrIvtcs~drnayVw~~~~~~~WkptlvLlR---iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN----dWWVsKh  140 (361)
T KOG1523|consen   68 NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLR---INRAATCVKWSPKENKFAVGSGARLISVCYYEQEN----DWWVSKH  140 (361)
T ss_pred             CceeEccCCCCccccccCCCCeeccceeEEE---eccceeeEeecCcCceEEeccCccEEEEEEEeccc----ceehhhh
Confidence            88999999999999998 5555444333221   11288999999999999977 78889999887532    1222233


Q ss_pred             cccccccceeEEEeecCCCcEEEEEecCCeEEEEecC------------------CceEeEEeccccCCeEEEEECCCCc
Q 022019          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED------------------NMELLYVLHGQEGGVTHVQFSRDGN  278 (304)
Q Consensus       217 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~  278 (304)
                      ....+...|++++|+| ++-+|++|+.|+..++|..-                  -|+++.++....+.+..+.|+|+|.
T Consensus       141 ikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~  219 (361)
T KOG1523|consen  141 IKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN  219 (361)
T ss_pred             hCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence            3355677899999999 88899999999999999641                  1234445545567899999999999


Q ss_pred             EEEEeeccCCeEEEEecccce
Q 022019          279 YLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       279 ~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      .|+-.+ .|+.+.+=|.....
T Consensus       220 ~lawv~-Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  220 RLAWVG-HDSTVSFVDAAGPS  239 (361)
T ss_pred             EeeEec-CCCceEEeecCCCc
Confidence            999999 99999999887664

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.6e-19  Score=132.77  Aligned_cols=165  Identities=16%  Similarity=0.322  Sum_probs=114.0

Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeee--------------------------------
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR--------------------------------  161 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------------------------------  161 (304)
                      .+.+|+..|++++|       +.||+.|++++.|++|++|+++.-...                                
T Consensus        81 ~LKgH~~~vt~~~F-------sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~  153 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAF-------SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR  153 (420)
T ss_pred             hhhccCCceeeeEE-------cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc
Confidence            55678899999988       889999999999999999999752110                                


Q ss_pred             ----EEeecccc------------------cccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCccceeeeeeeccc
Q 022019          162 ----CTYRAYDA------------------VDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       162 ----~~~~~~~~------------------~~~~~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                          ..+.....                  ..+...+..+-....+.+|++ +.|..|.+|+++.  +.+.   .+    
T Consensus       154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG--q~L~---~i----  224 (420)
T KOG2096|consen  154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG--QLLQ---SI----  224 (420)
T ss_pred             CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC--ceee---ee----
Confidence                00000000                  001112223333334455553 3667777777752  1111   11    


Q ss_pred             cccccceeEEEeecCCCcEEEEEecCCeEEEEecC---C-----ceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeE
Q 022019          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---N-----MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI  290 (304)
Q Consensus       219 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~---~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i  290 (304)
                      ......-+..+.+| +|+++++++..-.|++|.+-   .     -..+..++||...|..++|+|+.+.+++.+ .||++
T Consensus       225 dtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS-kDG~w  302 (420)
T KOG2096|consen  225 DTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS-KDGKW  302 (420)
T ss_pred             ccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-cCCcE
Confidence            22333356778999 88899999999999999863   2     235678899999999999999999999999 99999


Q ss_pred             EEEecc
Q 022019          291 LCWDLR  296 (304)
Q Consensus       291 ~vwd~~  296 (304)
                      ++||++
T Consensus       303 riwdtd  308 (420)
T KOG2096|consen  303 RIWDTD  308 (420)
T ss_pred             EEeecc
Confidence            999985

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.6e-18  Score=124.75  Aligned_cols=210  Identities=12%  Similarity=0.188  Sum_probs=148.2

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      .|.+-+|+|.+++|+.|..+|.|-++.++.......       .............|..+++.++|+         ..+|
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------~~~gk~~iv~eqahdgpiy~~~f~---------d~~L   75 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------EPPGKLKIVPEQAHDGPIYYLAFH---------DDFL   75 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------CCCCCcceeeccccCCCeeeeeee---------hhhe
Confidence            366778999999999999999999999874322111       111122222336788899999984         3367


Q ss_pred             EEEeCCCCEEEEEcCCCee----eE----EeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCccceeee
Q 022019          142 ASTTRDHPIHLWDATTGLL----RC----TYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       142 ~~~~~dg~i~i~d~~~~~~----~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~  212 (304)
                      ++|+ ||.|+-|..+....    ..    ..+.+........|+++...|..+-++ +|.|+.++-||+++        .
T Consensus        76 ls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~--------G  146 (325)
T KOG0649|consen   76 LSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED--------G  146 (325)
T ss_pred             eecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC--------C
Confidence            7766 59999998764321    01    111112123344789999998655544 78999999999988        4


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc----------CCeEEEEECCCCcEEEE
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE----------GGVTHVQFSRDGNYLYT  282 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~  282 (304)
                      .+.....+|.+.+.++.--. ....+++|++||++++||.++++.+..+...+          .+|-+++-  +..+|++
T Consensus       147 ~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvC  223 (325)
T KOG0649|consen  147 RIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVC  223 (325)
T ss_pred             EEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEe
Confidence            44555589999999998755 44478999999999999999999888775322          24555554  5678998


Q ss_pred             eeccCCeEEEEecccceee
Q 022019          283 GGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       283 ~~~~d~~i~vwd~~~~~~~  301 (304)
                      |+  ...+.+|+++..++.
T Consensus       224 Gg--Gp~lslwhLrsse~t  240 (325)
T KOG0649|consen  224 GG--GPKLSLWHLRSSEST  240 (325)
T ss_pred             cC--CCceeEEeccCCCce
Confidence            87  678999999987654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=4.1e-18  Score=126.84  Aligned_cols=192  Identities=13%  Similarity=0.167  Sum_probs=132.4

Q ss_pred             eEEEecCCCeEEEeeCCCCCCccccccccccccCCccc-eEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEE
Q 022019           74 SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE-ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHL  152 (304)
Q Consensus        74 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  152 (304)
                      .|+.|++...|.-+++...... .....     ..... .-....|..++++++.         ++.++|+|+.|-+|+|
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~-~~~s~-----~~~l~~lF~~~aH~~sitavAV---------s~~~~aSGssDetI~I   67 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKG-CTDSV-----KPTLKPLFAFSAHAGSITALAV---------SGPYVASGSSDETIHI   67 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccc-ccccc-----ceeeeccccccccccceeEEEe---------cceeEeccCCCCcEEE
Confidence            4677888887777776533200 00000     00000 1123456778888876         7889999999999999


Q ss_pred             EEcCCCeeeEEeecccccccccceEEEEECCCCc--EEE-EEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEE
Q 022019          153 WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT--KIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA  229 (304)
Q Consensus       153 ~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  229 (304)
                      ||+++......+-.|.+     .|+++.|.+.-.  .|+ ++.||.|.+|+...        ........+|.+.|+.++
T Consensus        68 YDm~k~~qlg~ll~Hag-----sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~--------W~~~~slK~H~~~Vt~ls  134 (362)
T KOG0294|consen   68 YDMRKRKQLGILLSHAG-----SITALKFYPPLSKSHLLSGSDDGHIIIWRVGS--------WELLKSLKAHKGQVTDLS  134 (362)
T ss_pred             Eeccchhhhcceecccc-----ceEEEEecCCcchhheeeecCCCcEEEEEcCC--------eEEeeeecccccccceeE
Confidence            99998888777776655     999999999763  566 55999999999865        455555688999999999


Q ss_pred             eecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       230 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      .+| .+++.++.+.|+.++.||+-.++.-..++- ...-+.+.|+|.|.+++.++  -..|-+|.+.+
T Consensus       135 iHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~  198 (362)
T KOG0294|consen  135 IHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSG--RNKIDIYQLDN  198 (362)
T ss_pred             ecC-CCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEe--ccEEEEEeccc
Confidence            999 888999999999999999977765444431 11223366666655555444  22355555443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.2e-18  Score=133.66  Aligned_cols=222  Identities=11%  Similarity=0.120  Sum_probs=163.0

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+.+|.+.|++|.|+.++++|++|+.|..+++|++...-....          .+......-+|...|.+++|       
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~----------~KPI~~~~~~H~SNIF~L~F-------  113 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT----------PKPIGVMEHPHRSNIFSLEF-------  113 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC----------CCCceeccCccccceEEEEE-------
Confidence            6779999999999999999999999999999999864321111          11122233345578999987       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCccceeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      +..+..+++|..+++|.+.|+++.+.+..+....   ..+.|+.+..+|..+.+++ +.++.|.+||.+........+..
T Consensus       114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~---~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~  190 (609)
T KOG4227|consen  114 DLENRFLYSGERWGTVIKHDIETKQSIYVANENN---NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP  190 (609)
T ss_pred             ccCCeeEecCCCcceeEeeecccceeeeeecccC---cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee
Confidence            6678899999999999999999887766554332   3348999999998888874 59999999999975444433222


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce-EeEEec------cccCCeEEEEECCCCcEEEEeecc
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLH------GQEGGVTHVQFSRDGNYLYTGGRK  286 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~~  286 (304)
                           .........+.|+|-...+|++.+..+-+-+||++... ++....      .....-.++.|+|+|..+++-- .
T Consensus       191 -----AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR-R  264 (609)
T KOG4227|consen  191 -----ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR-R  264 (609)
T ss_pred             -----cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-c
Confidence                 22334577899999888899999999999999998543 222221      1122346788999999988776 5


Q ss_pred             CCeEEEEecccceeee
Q 022019          287 DPYILCWDLRKAVQVV  302 (304)
Q Consensus       287 d~~i~vwd~~~~~~~~  302 (304)
                      ...-.+||+-+.++.+
T Consensus       265 ~~~P~~~D~~S~R~~V  280 (609)
T KOG4227|consen  265 GKCPLYFDFISQRCFV  280 (609)
T ss_pred             cCCCEEeeeeccccee
Confidence            5566777877765554

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=2.6e-18  Score=128.44  Aligned_cols=193  Identities=15%  Similarity=0.215  Sum_probs=141.8

Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEE
Q 022019           63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (304)
Q Consensus        63 V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (304)
                      -.+++|+|||.+|+.| ....|++||+...............         -..+...-+.+++++|.      +...++
T Consensus       161 AhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~---------~k~gq~giisc~a~sP~------~~~~~a  224 (406)
T KOG2919|consen  161 AHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK---------GKFGQKGIISCFAFSPM------DSKTLA  224 (406)
T ss_pred             heeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhc---------ccccccceeeeeeccCC------CCccee
Confidence            4589999999999854 5679999999543332222111110         01222356677777665      455899


Q ss_pred             EEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCccceeeeeeeccccc
Q 022019          143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEG  220 (304)
Q Consensus       143 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  220 (304)
                      .|+....+-||.-..+.+...+-.+..     .|+.+.|.++|+.|++|  .+..|-.||+|......-.+       ..
T Consensus       225 ~gsY~q~~giy~~~~~~pl~llggh~g-----GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L-------~r  292 (406)
T KOG2919|consen  225 VGSYGQRVGIYNDDGRRPLQLLGGHGG-----GVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL-------ER  292 (406)
T ss_pred             eecccceeeeEecCCCCceeeecccCC-----CeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh-------hh
Confidence            999999999999888888887776655     99999999999999966  89999999998753322211       22


Q ss_pred             ccc-cee--EEEeecCCCcEEEEEecCCeEEEEecCC-ceEeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          221 QAG-IMS--AIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       221 ~~~-~v~--~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      |.. .-.  -+...| .+.+|++|+.||.|++||++. +..+..+..+...++.++++|--.++++++
T Consensus       293 hv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  293 HVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS  359 (406)
T ss_pred             hccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence            222 111  245567 788999999999999999988 677778888899999999999988888776

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.80  E-value=5.5e-17  Score=128.17  Aligned_cols=199  Identities=19%  Similarity=0.280  Sum_probs=152.6

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      ...+|.+..+.++..|+...|+|++.|+.+++|+  +.+..                  ....-..++.+..|       
T Consensus       363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~------------------wt~~~~d~~~~~~f-------  415 (626)
T KOG2106|consen  363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE------------------WTKIIEDPAECADF-------  415 (626)
T ss_pred             EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee------------------EEEEecCceeEeec-------
Confidence            4568999999999999999999999999999998  22211                  11222356666665       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      +|.| .++.|...|...+.|.++...+..... ..     ++.+++|+|+|.+||+| .|+.|+||-+...+........
T Consensus       416 hpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~-----~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k  488 (626)
T KOG2106|consen  416 HPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NE-----QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK  488 (626)
T ss_pred             cCcc-eEEEeeccceEEEEecccceeEEEEec-CC-----ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence            6677 899999999999999998665544443 32     89999999999999976 9999999999887766655544


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc--------------------------------------
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--------------------------------------  255 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~--------------------------------------  255 (304)
                      .      +..+|+.+.|++ +++++.+-+-|-.|..|.....                                      
T Consensus       489 ~------~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~  561 (626)
T KOG2106|consen  489 C------SGSPITHLDWSS-DSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH  561 (626)
T ss_pred             e------cCceeEEeeecC-CCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh
Confidence            3      227799999999 6778888887777877742111                                      


Q ss_pred             -------------------------eEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          256 -------------------------ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       256 -------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                                               .+...+.+|.+-|++++|..+...+++.+ .|..|..|++
T Consensus       562 ~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg-~D~Si~qW~l  625 (626)
T KOG2106|consen  562 CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTG-KDTSIMQWRL  625 (626)
T ss_pred             hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecC-CCceEEEEEe
Confidence                                     11223446778899999998888888888 9999999986

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.80  E-value=3.9e-19  Score=144.06  Aligned_cols=154  Identities=18%  Similarity=0.229  Sum_probs=123.6

Q ss_pred             eCCCCEEEEEcCCC-eeeE-EeecccccccccceEEEEECC-CCcEEEE-EcCCeEEEEEcCCCCccceeeeeeeccccc
Q 022019          145 TRDHPIHLWDATTG-LLRC-TYRAYDAVDEITAAFSVAFNP-TGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEG  220 (304)
Q Consensus       145 ~~dg~i~i~d~~~~-~~~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  220 (304)
                      +..|.|-||+++.. +... .+..   ......|+.+.|+| |...|++ +.||.|++|.+..++-.. ...+.......
T Consensus       600 g~gG~iai~el~~PGrLPDgv~p~---l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e-~~~tPe~~lt~  675 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGVMPG---LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE-NEMTPEKILTI  675 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCcccccc---cccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc-ccCCcceeeec
Confidence            55789999999752 2211 1111   12233899999999 6677775 599999999998754322 22333444577


Q ss_pred             cccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       221 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      |...|+++.|+|-...+|+++++|-+|++||+++++....+.+|.+.|.+++|||||+.+++.+ .||+|++|+.++++.
T Consensus       676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc-KDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVC-KDGTLRVYEPRSREQ  754 (1012)
T ss_pred             ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeee-cCceEEEeCCCCCCC
Confidence            8899999999998888999999999999999999999999999999999999999999999999 999999999998877


Q ss_pred             eee
Q 022019          301 VVY  303 (304)
Q Consensus       301 ~~~  303 (304)
                      .+|
T Consensus       755 pv~  757 (1012)
T KOG1445|consen  755 PVY  757 (1012)
T ss_pred             ccc
Confidence            654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.79  E-value=7.6e-18  Score=126.16  Aligned_cols=173  Identities=18%  Similarity=0.315  Sum_probs=132.2

Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC----CcEEE
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT----GTKIF  189 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~l~  189 (304)
                      +...++.+++.++|++....  .+-..+++++ ...+.+|.....-..+.++......+....+.++|+-+    +.+++
T Consensus        33 l~ed~~~~I~gv~fN~~~~~--~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la  109 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGC--DEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLA  109 (385)
T ss_pred             hhccCCCccceeeeehhcCC--CCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEE
Confidence            55567788999988654322  1223455555 44688888765433344443333344456777888653    34666


Q ss_pred             -EEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec---ccc
Q 022019          190 -AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH---GQE  265 (304)
Q Consensus       190 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~  265 (304)
                       +|.-|.|+|.|+.+        .++.....+|...|..+.|+|+..++++++|.|..|++|++++..++..|-   +|.
T Consensus       110 ~~G~~GvIrVid~~~--------~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr  181 (385)
T KOG1034|consen  110 AGGYLGVIRVIDVVS--------GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR  181 (385)
T ss_pred             eecceeEEEEEecch--------hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccccc
Confidence             45899999999986        444555588999999999999888999999999999999999999988874   799


Q ss_pred             CCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       266 ~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      ..|.++.|+++|.+|+++| .|.+|++|++...
T Consensus       182 deVLSvD~~~~gd~i~ScG-mDhslk~W~l~~~  213 (385)
T KOG1034|consen  182 DEVLSVDFSLDGDRIASCG-MDHSLKLWRLNVK  213 (385)
T ss_pred             CcEEEEEEcCCCCeeeccC-CcceEEEEecChh
Confidence            9999999999999999999 9999999999843

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.78  E-value=4.4e-17  Score=135.53  Aligned_cols=249  Identities=13%  Similarity=0.116  Sum_probs=168.6

Q ss_pred             cccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCC--eEEEecCCCeEEEeeCCCCCCccccccccccccC
Q 022019           30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGS--SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ  107 (304)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~--~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  107 (304)
                      +.+...+..||............-.....|..+|+.+.|..+-.  -|++++.||.|..|+++.-.............  
T Consensus       261 G~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~--  338 (555)
T KOG1587|consen  261 GCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK--  338 (555)
T ss_pred             eccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc--
Confidence            33444677788776655322233335678999999999987444  49999999999999876443322211111000  


Q ss_pred             CccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeee--EEeecc-cccccccceEEEEECCC
Q 022019          108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR--CTYRAY-DAVDEITAAFSVAFNPT  184 (304)
Q Consensus       108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~-~~~~~~~~v~~i~~~~~  184 (304)
                         ...........++.+.|.+.      +-..|++|+++|.|+--+....+..  ..++.+ ....|.++|+++.++|-
T Consensus       339 ---~~~~~~~~~~~~t~~~F~~~------~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF  409 (555)
T KOG1587|consen  339 ---HKGQQSSKAVGATSLKFEPT------DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF  409 (555)
T ss_pred             ---ccccccccccceeeEeeccC------CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCC
Confidence               00111222356777888665      4457999999998877443322211  122222 12235559999999997


Q ss_pred             CcEEE-EEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc--eEeEEe
Q 022019          185 GTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--ELLYVL  261 (304)
Q Consensus       185 ~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~  261 (304)
                      +..++ ++.|.+++||.......+       ......+...+++++|||.....++++..||.|.|||+...  .++.+.
T Consensus       410 ~~k~fls~gDW~vriWs~~~~~~P-------l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~  482 (555)
T KOG1587|consen  410 YPKNFLSVGDWTVRIWSEDVIASP-------LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ  482 (555)
T ss_pred             ccceeeeeccceeEeccccCCCCc-------chhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc
Confidence            76555 557999999998632211       11224455569999999977789999999999999999654  567777


Q ss_pred             ccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          262 HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       262 ~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      ..+....+.+.|++.|+.|++|. ..|.+.+|++..
T Consensus       483 ~~~~~~l~~~~~s~~g~~lavGd-~~G~~~~~~l~~  517 (555)
T KOG1587|consen  483 KVCSPALTRVRWSPNGKLLAVGD-ANGTTHILKLSE  517 (555)
T ss_pred             cccccccceeecCCCCcEEEEec-CCCcEEEEEcCc
Confidence            66667788899999999999999 999999999964

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.78  E-value=4.6e-19  Score=138.31  Aligned_cols=230  Identities=19%  Similarity=0.269  Sum_probs=171.6

Q ss_pred             cccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCc
Q 022019           30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS  109 (304)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  109 (304)
                      ....|.+..-++...-..........+.-..-.-..+.++.+|++|+.|+.-|.|-.+|+.+..+..++..         
T Consensus        99 ~EkT~~v~Q~~Ia~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---------  169 (545)
T KOG1272|consen   99 LEKTYKVRQDDIAENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV---------  169 (545)
T ss_pred             CcceeeeEHhhhhhhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh---------
Confidence            34444444444433333322222223333344567899999999999999999999999998766544332         


Q ss_pred             cceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE
Q 022019          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (304)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  189 (304)
                               ...|.++.|..       +.++||+ .....++|||- .|..+..+..+.      .|..+.|-|..-+|+
T Consensus       170 ---------~Etv~Dv~~LH-------neq~~AV-AQK~y~yvYD~-~GtElHClk~~~------~v~rLeFLPyHfLL~  225 (545)
T KOG1272|consen  170 ---------METVRDVTFLH-------NEQFFAV-AQKKYVYVYDN-NGTELHCLKRHI------RVARLEFLPYHFLLV  225 (545)
T ss_pred             ---------hhhhhhhhhhc-------chHHHHh-hhhceEEEecC-CCcEEeehhhcC------chhhhcccchhheee
Confidence                     35677777732       3344544 46778999994 566666666555      788999999988888


Q ss_pred             EE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCe
Q 022019          190 AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV  268 (304)
Q Consensus       190 ~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v  268 (304)
                      ++ ..|.++.-|+..+        .+...+....+.+..++-+| ..-++-+|..+|+|.+|.....+++..+-.|.++|
T Consensus       226 ~~~~~G~L~Y~DVS~G--------klVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V  296 (545)
T KOG1272|consen  226 AASEAGFLKYQDVSTG--------KLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPV  296 (545)
T ss_pred             ecccCCceEEEeechh--------hhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCc
Confidence            54 8899999999874        22223344556688899999 67799999999999999999999999998999999


Q ss_pred             EEEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          269 THVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       269 ~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      .++++.++|+|++|+| .|..++|||+++..++.
T Consensus       297 ~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~~ql~  329 (545)
T KOG1272|consen  297 SSIAVDRGGRYMATTG-LDRKVKIWDLRNFYQLH  329 (545)
T ss_pred             ceEEECCCCcEEeecc-cccceeEeeeccccccc
Confidence            9999999999999999 99999999999876553

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.1e-17  Score=125.89  Aligned_cols=213  Identities=17%  Similarity=0.295  Sum_probs=139.9

Q ss_pred             eeeecCCCCceeEEEEcC--CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           53 FRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      +..+++|...++.++|..  .+..+.+|+.||+|++||++.......+.-              ....+.+..++.-   
T Consensus        63 l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~--------------~~~~~~~f~~ld~---  125 (376)
T KOG1188|consen   63 LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW--------------TQQSGTPFICLDL---  125 (376)
T ss_pred             hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec--------------cCCCCCcceEeec---
Confidence            347889999999999987  456899999999999999986533211110              0011123333322   


Q ss_pred             cceeCCCccEEEEEeC----CCCEEEEEcCCCee-eEEeecccccccccceEEEEECCCC-cEEEEE-cCCeEEEEEcCC
Q 022019          131 MSASDPTSCVFASTTR----DHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHR  203 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d~~i~v~d~~~  203 (304)
                          +..++.+++|..    +-.|.+||++..+. +..+..    .|...|+++.|+|.. +.|++| .||.|.+||+..
T Consensus       126 ----nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e----SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~  197 (376)
T KOG1188|consen  126 ----NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE----SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK  197 (376)
T ss_pred             ----cCcCCeEEeccccccCceEEEEEEeccccchhhhhhh----hccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence                445667777743    56799999997665 333322    233489999999965 555566 999999999986


Q ss_pred             CCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE--------------------------
Q 022019          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL--------------------------  257 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--------------------------  257 (304)
                      ....-.....     -.+...|..+.|....=..|.+-+..+...+|+++.+.+                          
T Consensus       198 d~EeDaL~~v-----iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~  272 (376)
T KOG1188|consen  198 DNEEDALLHV-----INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE  272 (376)
T ss_pred             CcchhhHHHh-----hcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec
Confidence            5322111111     234555778888763334577777777788887653311                          


Q ss_pred             -----------------------------------eEEecc-ccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          258 -----------------------------------LYVLHG-QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       258 -----------------------------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                                                         +..+.+ |..-|+++.|...+.+++||| .||.+.+|...
T Consensus       273 ~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGG-EDG~l~~Wk~~  346 (376)
T KOG1188|consen  273 HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGG-EDGLLQAWKVE  346 (376)
T ss_pred             ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccC-CCceEEEEecC
Confidence                                               111222 344567777777788999999 99999999853

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=4.9e-18  Score=130.09  Aligned_cols=176  Identities=20%  Similarity=0.275  Sum_probs=131.6

Q ss_pred             CeEEEEeecCccceeCCCccEEEEE---eCCCCEEEEEcC-CCeeeEEeecccccccccceEEEEECCCC-cEEEEE-cC
Q 022019          120 ESVYDFCWFPHMSASDPTSCVFAST---TRDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG-YN  193 (304)
Q Consensus       120 ~~v~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~d  193 (304)
                      -.|....|...+.+++|.  +++..   +..|...+.-+. .|+....++..  .+|..+|..++|+|-+ ..||+| .|
T Consensus        28 IrVs~~tWDS~fcavNPk--fiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v--~GHt~~vLDi~w~PfnD~vIASgSeD  103 (472)
T KOG0303|consen   28 IRVSRVTWDSSFCAVNPK--FVAVIIEASGGGAFLVIPLVKTGRMDASYPLV--CGHTAPVLDIDWCPFNDCVIASGSED  103 (472)
T ss_pred             eeeeeeeccccccccCCc--eEEEEEecCCCcceeecccccccccCCCCCCc--cCccccccccccCccCCceeecCCCC
Confidence            356677777666666553  44433   334455555443 34333333222  2456699999999954 556655 99


Q ss_pred             CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEE
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF  273 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  273 (304)
                      .+|.||++-..+.... .......+.+|...|.-++|+|...+.|++++.|..|.+|+..+++.+.++. |..-|++++|
T Consensus       104 ~~v~vW~IPe~~l~~~-ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sf  181 (472)
T KOG0303|consen  104 TKVMVWQIPENGLTRD-LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSF  181 (472)
T ss_pred             ceEEEEECCCcccccC-cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEe
Confidence            9999999976432221 2233334578999999999999888999999999999999999999988888 9999999999


Q ss_pred             CCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          274 SRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       274 ~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      +-||.+|++++ .|..|+|||.++++.+.
T Consensus       182 n~dGs~l~Ttc-kDKkvRv~dpr~~~~v~  209 (472)
T KOG0303|consen  182 NRDGSLLCTTC-KDKKVRVIDPRRGTVVS  209 (472)
T ss_pred             ccCCceeeeec-ccceeEEEcCCCCcEee
Confidence            99999999999 99999999999997653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.78  E-value=1.9e-17  Score=131.71  Aligned_cols=177  Identities=17%  Similarity=0.240  Sum_probs=125.9

Q ss_pred             CCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCC
Q 022019           70 PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHP  149 (304)
Q Consensus        70 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~  149 (304)
                      |.+--|+.|-.-|.|.+.|....+....++.             -.......|+++.|.|.      +...++++-.+|.
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne-------------~r~i~ktsvT~ikWvpg------~~~~Fl~a~~sGn  243 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNE-------------ERLINKSSVTCIKWVPG------SDSLFLVAHASGN  243 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhh-------------cccccccceEEEEEEeC------CCceEEEEEecCc
Confidence            3455566777778888888764222111111             11112278999999775      4457778888999


Q ss_pred             EEEEEcCC--------------CeeeEEee--cccc-------cccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCC
Q 022019          150 IHLWDATT--------------GLLRCTYR--AYDA-------VDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPG  205 (304)
Q Consensus       150 i~i~d~~~--------------~~~~~~~~--~~~~-------~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~  205 (304)
                      +++||..-              +.......  ....       .-....|..++|+|||++|| ++.||.++|||..+  
T Consensus       244 lyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt--  321 (636)
T KOG2394|consen  244 LYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT--  321 (636)
T ss_pred             eEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH--
Confidence            99997631              11111110  0000       00123688999999999999 68999999999976  


Q ss_pred             ccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEEC
Q 022019          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS  274 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  274 (304)
                            ..+.......-+...|++|+| ++++|++|++|.-|.||.+...+.+..-.+|+++|..++|.
T Consensus       322 ------~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  322 ------QELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             ------HHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence                  334343455566799999999 88899999999999999999999999999999999999998

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=3.1e-19  Score=148.54  Aligned_cols=223  Identities=14%  Similarity=0.247  Sum_probs=159.2

Q ss_pred             ccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEE
Q 022019           45 RTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD  124 (304)
Q Consensus        45 ~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  124 (304)
                      ..++..+..+.+.+|.++|.|+.|...|.++++|+.|..++||..++..+.....                 +|...+++
T Consensus       175 tmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-----------------Ghs~ditd  237 (1113)
T KOG0644|consen  175 TMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-----------------GHSGDITD  237 (1113)
T ss_pred             HHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-----------------CCccccch
Confidence            3444445666788999999999999999999999999999999988765544333                 33356666


Q ss_pred             EeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCC
Q 022019          125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP  204 (304)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~  204 (304)
                      ++.       +.++..+++++.|..|++|.+..+.++..+..|.+     .|++++|+|-.   .++.||++++||.+-.
T Consensus       238 lav-------s~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg-----avtaiafsP~~---sss~dgt~~~wd~r~~  302 (1113)
T KOG0644|consen  238 LAV-------SSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTG-----AVTAIAFSPRA---SSSDDGTCRIWDARLE  302 (1113)
T ss_pred             hcc-------chhhhhhhhcccCceEEEEecCCCchHHHHhcccc-----ceeeeccCccc---cCCCCCceEecccccc
Confidence            654       66777899999999999999999999988887765     99999999965   5569999999999821


Q ss_pred             Cccce----------eeeee------------eccccccccceeEEEeecCCCcEEE-----------EEecCCeEEEEe
Q 022019          205 GRDFE----------KYSTL------------KGNKEGQAGIMSAIAFSPTHTGMLA-----------IGSYSQTSAIYR  251 (304)
Q Consensus       205 ~~~~~----------~~~~~------------~~~~~~~~~~v~~~~~~p~~~~~l~-----------~~~~dg~i~i~d  251 (304)
                      .....          ....+            .....+....+..++|.. ....++           ++-.+-.+.+|+
T Consensus       303 ~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-~~lif~t~ssd~~~~~~~ar~~~~~~vwn  381 (1113)
T KOG0644|consen  303 PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS-NLLIFVTRSSDLSSIVVTARNDHRLCVWN  381 (1113)
T ss_pred             ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhc-cceEEEeccccccccceeeeeeeEeeeee
Confidence            11000          00000            000000011122233332 222233           333445678899


Q ss_pred             cCCceEeEEeccccCCeEEEEECCCCcEE-EEeeccCCeEEEEecccceee
Q 022019          252 EDNMELLYVLHGQEGGVTHVQFSRDGNYL-YTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       252 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +.++...+.+.+|...+..+.++|-...+ .+++ .||...|||+-.|..+
T Consensus       382 l~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag-~dgst~iwdi~eg~pi  431 (1113)
T KOG0644|consen  382 LYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG-YDGSTIIWDIWEGIPI  431 (1113)
T ss_pred             cccchhhhhhcccccceeeeeecCCCcHhhhhcc-CCCceEeeecccCCcc
Confidence            98998888899999999999999977655 4666 9999999999887655

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=1.7e-17  Score=132.13  Aligned_cols=183  Identities=21%  Similarity=0.309  Sum_probs=139.5

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      ....|.+.|.+-.|+|||.-|+|++.||.|++|.-...                  ..........+|++++|.|     
T Consensus        99 sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM------------------LRStl~Q~~~~v~c~~W~p-----  155 (737)
T KOG1524|consen   99 SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM------------------LRSTVVQNEESIRCARWAP-----  155 (737)
T ss_pred             hhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch------------------HHHHHhhcCceeEEEEECC-----
Confidence            56789999999999999999999999999999975422                  1223344557999999955     


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                        +.+.++.+. .+.+.|=.+.....+..++.|++     -|.++.|++....+++| .|-..++||-..         .
T Consensus       156 --~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDG-----iiL~~~W~~~s~lI~sgGED~kfKvWD~~G---------~  218 (737)
T KOG1524|consen  156 --NSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDG-----LVLSLSWSTQSNIIASGGEDFRFKIWDAQG---------A  218 (737)
T ss_pred             --CCCceEEec-CCeEEEeecccccceeEEeccCc-----EEEEeecCccccceeecCCceeEEeecccC---------c
Confidence              554555543 45688888877777777887776     89999999999999965 999999999753         1


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                      .......|..+|++++|+| + ..++.++.+ +.+           --+...+.|..++||+||..++.|. ..|.+.+
T Consensus       219 ~Lf~S~~~ey~ITSva~np-d-~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt-~~G~v~~  282 (737)
T KOG1524|consen  219 NLFTSAAEEYAITSVAFNP-E-KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGT-STGQLIV  282 (737)
T ss_pred             ccccCChhccceeeeeecc-c-cceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccc-cCceEEE
Confidence            1122266888999999999 5 567777753 333           1123457899999999999999998 7887654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=1e-16  Score=133.51  Aligned_cols=196  Identities=14%  Similarity=0.124  Sum_probs=128.2

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCC---CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      .+..|...+...+|+|||+.|+.++.+   ..|.+||+.++....                 + ..........+     
T Consensus       198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-----------------l-~~~~g~~~~~~-----  254 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-----------------V-ASFRGHNGAPA-----  254 (429)
T ss_pred             EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-----------------E-ecCCCccCcee-----
Confidence            456788889999999999999987653   469999987543210                 0 00011112334     


Q ss_pred             ceeCCCccEEEEEe-CCCCEEEE--EcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCc
Q 022019          132 SASDPTSCVFASTT-RDHPIHLW--DATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGR  206 (304)
Q Consensus       132 ~~~~~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~  206 (304)
                        |+|||+.|+.++ .+|.+.||  |+.++... .+..+..     .+....|+|||+.|+ ++ .++...||++...+.
T Consensus       255 --wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~-----~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~  326 (429)
T PRK01742        255 --FSPDGSRLAFASSKDGVLNIYVMGANGGTPS-QLTSGAG-----NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG  326 (429)
T ss_pred             --ECCCCCEEEEEEecCCcEEEEEEECCCCCeE-eeccCCC-----CcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence              488999888764 67765554  66665543 3332221     567899999999877 55 678888888765332


Q ss_pred             cceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeecc
Q 022019          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK  286 (304)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  286 (304)
                      ....   +     .+..  ....|+| ++..|+.++.++ +.+||+.+++.......+  ...++.|+|||++|+.++ .
T Consensus       327 ~~~~---l-----~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s-~  391 (429)
T PRK01742        327 GASL---V-----GGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSS-T  391 (429)
T ss_pred             CeEE---e-----cCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEE-c
Confidence            2211   1     1122  3578999 566676666654 566999887654322222  235688999999999999 8


Q ss_pred             CCeEEEEecc
Q 022019          287 DPYILCWDLR  296 (304)
Q Consensus       287 d~~i~vwd~~  296 (304)
                      ++.+.+|++.
T Consensus       392 ~g~~~~l~~~  401 (429)
T PRK01742        392 QGLGKVLQLV  401 (429)
T ss_pred             CCCceEEEEE
Confidence            8888888763

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=5.3e-16  Score=125.45  Aligned_cols=209  Identities=15%  Similarity=0.170  Sum_probs=132.8

Q ss_pred             CceeEEEEcCCCCeEEEecC-CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           61 NFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      +....++|+|++++|++++. ++.|.+|++++........              ......       ..|+.++++|+++
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~--------------~~~~~~-------~~~~~~~~~p~g~  138 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI--------------QIIEGL-------EGCHSANIDPDNR  138 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce--------------eeccCC-------CcccEeEeCCCCC
Confidence            35678999999998888764 8899999986432111000              000011       1244455688998


Q ss_pred             EEEEEe-CCCCEEEEEcCCCeeeE-----EeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCccceee
Q 022019          140 VFASTT-RDHPIHLWDATTGLLRC-----TYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       140 ~l~~~~-~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~  211 (304)
                      ++++++ .++.|.+||+.+.....     ......    ......+.|+|+++++++.  .++.|.+||+..........
T Consensus       139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~----g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~  214 (330)
T PRK11028        139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE----GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV  214 (330)
T ss_pred             EEEEeeCCCCEEEEEEECCCCcccccCCCceecCC----CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence            876554 56899999997632211     111111    1245689999999999854  58999999997432233333


Q ss_pred             eeeecccc--ccccceeEEEeecCCCcEEEEEe-cCCeEEEEecCCce----EeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          212 STLKGNKE--GQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNME----LLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       212 ~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      ..+.....  ........+.++| ++++++++. .++.|.+|++....    .+..... ......+.|+|+|++|++++
T Consensus       215 ~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~  292 (330)
T PRK11028        215 QTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAG  292 (330)
T ss_pred             EEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEE
Confidence            33221111  1122334688999 566666664 47899999986433    2333322 12456789999999999988


Q ss_pred             ccCCeEEEEecc
Q 022019          285 RKDPYILCWDLR  296 (304)
Q Consensus       285 ~~d~~i~vwd~~  296 (304)
                      ..+++|.+|+++
T Consensus       293 ~~~~~v~v~~~~  304 (330)
T PRK11028        293 QKSHHISVYEID  304 (330)
T ss_pred             ccCCcEEEEEEc
Confidence            569999999875

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=1.9e-16  Score=121.28  Aligned_cols=213  Identities=16%  Similarity=0.258  Sum_probs=155.4

Q ss_pred             ecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC
Q 022019           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (304)
                      .....++|.+++.. || .|++|-.+|.+.+|..+.+...              .........+..+..+.-.+.     
T Consensus       101 ~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~h--------------ss~l~~la~g~g~~~~r~~~~-----  159 (412)
T KOG3881|consen  101 VSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLH--------------SSKLIKLATGPGLYDVRQTDT-----  159 (412)
T ss_pred             cccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccc--------------cccceeeecCCceeeeccCCC-----
Confidence            34445566666654 33 7888889999999998854321              011123333355555554332     


Q ss_pred             CCccEEEEEeCC--CCEEEEEcCCCeeeEEeeccc----ccccccceEEEEECCC--CcEEEEE-cCCeEEEEEcCCCCc
Q 022019          136 PTSCVFASTTRD--HPIHLWDATTGLLRCTYRAYD----AVDEITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVHRPGR  206 (304)
Q Consensus       136 ~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~----~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~v~d~~~~~~  206 (304)
                       ....+++|+..  ..+.+||+...+.+..-....    ...-+-.++++.|-+.  ...|+++ .-+.+++||.+...+
T Consensus       160 -~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR  238 (412)
T KOG3881|consen  160 -DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR  238 (412)
T ss_pred             -CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc
Confidence             33467778888  789999999875443322211    1112336788999887  7778855 899999999997655


Q ss_pred             cceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEE-eccccCCeEEEEECCCCcEEEEeec
Q 022019          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVQFSRDGNYLYTGGR  285 (304)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~  285 (304)
                      ++..+       .-...+++++...| ++.++++|..-|.+..||++.++.... +.+-.+.|+++..+|.+++|+++| 
T Consensus       239 PV~~f-------d~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G-  309 (412)
T KOG3881|consen  239 PVAQF-------DFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG-  309 (412)
T ss_pred             ceeEe-------ccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec-
Confidence            55443       33356799999999 888999999999999999999998776 888999999999999999999999 


Q ss_pred             cCCeEEEEecccce
Q 022019          286 KDPYILCWDLRKAV  299 (304)
Q Consensus       286 ~d~~i~vwd~~~~~  299 (304)
                      -|..|+|+|+.+.+
T Consensus       310 LDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  310 LDRYVRIHDIKTRK  323 (412)
T ss_pred             cceeEEEeecccch
Confidence            99999999999943

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=4.5e-17  Score=117.31  Aligned_cols=165  Identities=12%  Similarity=0.102  Sum_probs=118.8

Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCe-----eeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCcc
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGL-----LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRD  207 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~  207 (304)
                      +++|.+++|++|+.+|.|.++.+++-.     ............|..+++.++|.  ..+|+++.||.|+-|..+...+.
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es   94 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEES   94 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhh
Confidence            348899999999999999999986411     11111111112344599999998  56777888899999987653221


Q ss_pred             c--eeeee---eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEE
Q 022019          208 F--EKYST---LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT  282 (304)
Q Consensus       208 ~--~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  282 (304)
                      .  +....   +.......-..|+++...|..+.+|.+| .|+.++-||+++++...++++|...|.++.--.....+++
T Consensus        95 ~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qils  173 (325)
T KOG0649|consen   95 LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILS  173 (325)
T ss_pred             ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceee
Confidence            1  11111   1111011123488999999655555544 8999999999999999999999999999998556667999


Q ss_pred             eeccCCeEEEEecccceee
Q 022019          283 GGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       283 ~~~~d~~i~vwd~~~~~~~  301 (304)
                      |+ .||++++||+++++++
T Consensus       174 G~-EDGtvRvWd~kt~k~v  191 (325)
T KOG0649|consen  174 GA-EDGTVRVWDTKTQKHV  191 (325)
T ss_pred             cC-CCccEEEEecccccee
Confidence            99 9999999999999876

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=1.2e-16  Score=136.62  Aligned_cols=236  Identities=18%  Similarity=0.206  Sum_probs=152.9

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcC--CCCeEEEecCCCeEEEeeCCCCCC-ccc-cccccccccCCcc
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGI-SYD-VNACSLAKDQDSY  110 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--~~~~l~s~~~dg~v~vwd~~~~~~-~~~-~~~~~~~~~~~~~  110 (304)
                      .+..|+.+..+.+..+.   .-......|+.+.+-.  |..++++|+.||.||||+-..... ..+ +......      
T Consensus      1087 ~i~vwd~e~~~~l~~F~---n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~L------ 1157 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRLLNGFD---NGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSL------ 1157 (1387)
T ss_pred             eEEEEecccCceecccc---CCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccc------
Confidence            34556666555554322   2234567899999976  556899999999999997543221 000 0000000      


Q ss_pred             ceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECC-CCcEEE
Q 022019          111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIF  189 (304)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~  189 (304)
                      ........ +.-.-+.|       .....+|+++++-..|+|||.........++....    ..|+++.-+- .|+.++
T Consensus      1158 s~~~~~~r-~~~~v~dW-------qQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~----t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1158 SDQLPGAR-GTGLVVDW-------QQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS----TLVTALSADLVHGNIIA 1225 (1387)
T ss_pred             cccCccCC-CCCeeeeh-------hhhCCeEEecCCeeEEEEEecccceeEeecccCCC----ccceeecccccCCceEE
Confidence            00000000 11122334       44455666666788999999998877777665432    2667776554 368888


Q ss_pred             EE-cCCeEEEEEcCCCCccceeeeeeeccccccccc--eeEEEeecCCCcEEEEEecCCeEEEEecCCceEeE--Eeccc
Q 022019          190 AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI--MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY--VLHGQ  264 (304)
Q Consensus       190 ~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~  264 (304)
                      +| .||.|++||.|.....     ........|...  |..+.+.+.+-..|++|+.||.|++||++......  ++..|
T Consensus      1226 AGfaDGsvRvyD~R~a~~d-----s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPD-----SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred             EeecCCceEEeecccCCcc-----ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence            88 9999999999975432     111222445555  89999999544569999999999999999743222  22233


Q ss_pred             c--C-CeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          265 E--G-GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       265 ~--~-~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      -  + .++++..+++...+|+|+ . +.|.||++...
T Consensus      1301 ~~yGs~lTal~VH~hapiiAsGs-~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGS-A-QLIKIYSLSGE 1335 (1387)
T ss_pred             cccCccceeeeeccCCCeeeecC-c-ceEEEEecChh
Confidence            2  3 599999999999999998 6 99999999654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.75  E-value=2.4e-16  Score=129.00  Aligned_cols=234  Identities=13%  Similarity=0.242  Sum_probs=166.2

Q ss_pred             ccceeeeecCCCCceeEEEEcCCCC---eEEEecCCCeEEEeeCCCCCCcc----ccccccccccCCcc-----------
Q 022019           49 FYNQFRTSSIPNNFLKGIKWSPDGS---SFLTSSEDKTLRIFSLPENGISY----DVNACSLAKDQDSY-----------  110 (304)
Q Consensus        49 ~~~~~~~~~~h~~~V~~i~~s~~~~---~l~s~~~dg~v~vwd~~~~~~~~----~~~~~~~~~~~~~~-----------  110 (304)
                      .++....+.||.+.|.+++|...+.   +|||+|.|..||||.+.-+....    +...... ......           
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~-~~~~~f~~l~~i~~~is  258 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTL-SNLPVFMILEEIQYRIS  258 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccc-cCCceeeeeeeEEEEEe
Confidence            4466778999999999999987443   88999999999999975433111    1100000 000000           


Q ss_pred             ceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCC--eeeEEeecccccccccceEEEEECCCCcEE
Q 022019          111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKI  188 (304)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  188 (304)
                      ...+..+|..-|+++.|       +|.+..|++++.|.++.+|.-.+.  -.+.........+.....++..|+|+++.+
T Consensus       259 ~eall~GHeDWV~sv~W-------~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i  331 (764)
T KOG1063|consen  259 FEALLMGHEDWVYSVWW-------HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI  331 (764)
T ss_pred             hhhhhcCcccceEEEEE-------ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence            01234578889999999       556778999999999999987643  333333332222223367899999999888


Q ss_pred             EE-EcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC----CceEeEEecc
Q 022019          189 FA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED----NMELLYVLHG  263 (304)
Q Consensus       189 ~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~  263 (304)
                      ++ |..|..++|....     ...........+|...|++++|+| .+.+|++.+.|.+-|+|-.-    +...+..-.-
T Consensus       332 i~~g~~Gg~hlWkt~d-----~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQi  405 (764)
T KOG1063|consen  332 IAHGRTGGFHLWKTKD-----KTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQI  405 (764)
T ss_pred             EEecccCcEEEEeccC-----ccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeeccccc
Confidence            85 5999999998332     122444455589999999999999 78899999999999998653    2234444456


Q ss_pred             ccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       264 ~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      |...++|++|-+....+++|+ +...+|+|+...
T Consensus       406 HGyDl~c~~~vn~~~~FVSgA-dEKVlRvF~aPk  438 (764)
T KOG1063|consen  406 HGYDLTCLSFVNEDLQFVSGA-DEKVLRVFEAPK  438 (764)
T ss_pred             ccccceeeehccCCceeeecc-cceeeeeecCcH
Confidence            888899999988656677787 888999998743

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.1e-16  Score=119.19  Aligned_cols=199  Identities=18%  Similarity=0.265  Sum_probs=136.6

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      +-.+..++|++.-..||++..|-+|++||-... .                ...+.......|.+++|.|..      +.
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~----------------pt~Lks~sQrnvtclawRPls------as  154 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-C----------------PTKLKSVSQRNVTCLAWRPLS------AS  154 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCC-C----------------CceecchhhcceeEEEeccCC------cc
Confidence            445788999997778899999999999987641 1                111222334689999998863      33


Q ss_pred             EEEEEeCCCCEEEEEcCCC-eeeEE--------eecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccc
Q 022019          140 VFASTTRDHPIHLWDATTG-LLRCT--------YRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~-~~~~~--------~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~  208 (304)
                      .|++|+..| |.+|..... .....        .......+| ..|+++.|++||..++ ++ .|..|.|||..++... 
T Consensus       155 elavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~-  231 (445)
T KOG2139|consen  155 ELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI-  231 (445)
T ss_pred             eeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc-
Confidence            688888777 999987531 11110        011111122 3899999999999999 45 8899999999874321 


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC-CceEeEEeccccCCeEEEEECCCCcEEEEeeccC
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD  287 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d  287 (304)
                          .+.   ....+.++-+.|+| ++.+|++++-|+..++|... +.....-.- ..+.|...+|+|+|++|+.+.  .
T Consensus       232 ----pL~---~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~--s  300 (445)
T KOG2139|consen  232 ----PLI---PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFAC--S  300 (445)
T ss_pred             ----ccc---ccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEE--c
Confidence                111   12234588899999 77899999999999999554 333333333 355899999999999987776  3


Q ss_pred             CeEEEEec
Q 022019          288 PYILCWDL  295 (304)
Q Consensus       288 ~~i~vwd~  295 (304)
                      |.-++|.+
T Consensus       301 gsp~lysl  308 (445)
T KOG2139|consen  301 GSPRLYSL  308 (445)
T ss_pred             CCceEEEE
Confidence            34445544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=5e-15  Score=119.75  Aligned_cols=210  Identities=11%  Similarity=0.164  Sum_probs=131.6

Q ss_pred             CCceeEEEEcCCCCeEEEec-CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           60 NNFLKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      .+....++++|++++|++++ .++.|.+|++.........               .......       .|..++++|++
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~---------------~~~~~~~-------~p~~i~~~~~g   91 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA---------------AESPLPG-------SPTHISTDHQG   91 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe---------------eeecCCC-------CceEEEECCCC
Confidence            45577899999999887664 5788999998632110000               0000111       23445668999


Q ss_pred             cEEEEEeC-CCCEEEEEcCC-CeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeeee
Q 022019          139 CVFASTTR-DHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       139 ~~l~~~~~-dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      +++++++. ++.|.+|++.+ +..........   ....+.+++++|++++++ +. .++.|.+||+...+.........
T Consensus        92 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~---~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~  168 (330)
T PRK11028         92 RFLFSASYNANCVSVSPLDKDGIPVAPIQIIE---GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE  168 (330)
T ss_pred             CEEEEEEcCCCeEEEEEECCCCCCCCceeecc---CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence            98888764 78999999964 32211111100   111456789999999987 44 78999999997632111000000


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEec-CCeEEEEecCC--c--eEeEEeccc------cCCeEEEEECCCCcEEEEe
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAIYREDN--M--ELLYVLHGQ------EGGVTHVQFSRDGNYLYTG  283 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~--~--~~~~~~~~~------~~~v~~~~~~~~~~~l~~~  283 (304)
                      ... . .......++|+| ++++++++.. ++.|.+|++..  +  +.+..+..+      ......+.++|+|++|+++
T Consensus       169 ~~~-~-~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~  245 (330)
T PRK11028        169 VTT-V-EGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC  245 (330)
T ss_pred             eec-C-CCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence            000 1 122356899999 5666666655 89999999973  2  334444321      1223468899999999998


Q ss_pred             eccCCeEEEEeccc
Q 022019          284 GRKDPYILCWDLRK  297 (304)
Q Consensus       284 ~~~d~~i~vwd~~~  297 (304)
                      .+.++.|.+|++..
T Consensus       246 ~~~~~~I~v~~i~~  259 (330)
T PRK11028        246 DRTASLISVFSVSE  259 (330)
T ss_pred             cCCCCeEEEEEEeC
Confidence            75689999999964

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.74  E-value=4.9e-17  Score=125.02  Aligned_cols=178  Identities=17%  Similarity=0.208  Sum_probs=136.1

Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeE---Eeeccc-ccccccceEEEEECCCCcEEE
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC---TYRAYD-AVDEITAAFSVAFNPTGTKIF  189 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~-~~~~~~~v~~i~~~~~~~~l~  189 (304)
                      +..+...+++.+.|.+.      ..+.+++|+.|..|++|-+..+....   ...... -..|...|+++.|+|+|..++
T Consensus         8 i~wH~~~pv~s~dfq~n------~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLA   81 (434)
T KOG1009|consen    8 ISWHDHEPVYSVDFQKN------SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLA   81 (434)
T ss_pred             EEecCCCceEEEEeccC------cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeee
Confidence            34445578888888553      22289999999999999987543222   222211 113555999999999999999


Q ss_pred             EE-cCCeEEEEEcCC--------CCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEE
Q 022019          190 AG-YNKSVRVFDVHR--------PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV  260 (304)
Q Consensus       190 ~~-~d~~i~v~d~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~  260 (304)
                      +| .+|.|.+|-...        .....+..........+|...+..++|+| ++.++++++.|+.+++||+..|.....
T Consensus        82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~  160 (434)
T KOG1009|consen   82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAI  160 (434)
T ss_pred             ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEee
Confidence            76 889999998761        11111222333444567888999999999 788999999999999999999999999


Q ss_pred             eccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          261 LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       261 ~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      +..|...+..++|.|-++++++-+ .|...+.+.+...+
T Consensus       161 ~~dh~~yvqgvawDpl~qyv~s~s-~dr~~~~~~~~~~~  198 (434)
T KOG1009|consen  161 LDDHEHYVQGVAWDPLNQYVASKS-SDRHPEGFSAKLKQ  198 (434)
T ss_pred             ccccccccceeecchhhhhhhhhc-cCcccceeeeeeee
Confidence            999999999999999999999999 88877777776543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=1.2e-16  Score=136.64  Aligned_cols=256  Identities=14%  Similarity=0.219  Sum_probs=167.5

Q ss_pred             hhcCCCchhhcHHhhccccccCcceeeecCCCcccccccceeeee-cCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCC
Q 022019           12 QQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTS-SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLP   90 (304)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~   90 (304)
                      +..++....+...++.+...+.|..+.-...+......+..+... .+..+.=.-+.|.....+|+++|.-..|+|||..
T Consensus      1116 ~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1116 ELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred             eeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc
Confidence            334455666777888999999997654433333333333322221 2222222457888766677777778899999998


Q ss_pred             CCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCe---eeEEeecc
Q 022019           91 ENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAY  167 (304)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~  167 (304)
                      .......+                .......++++.-.      ...|+.+++|..||.|++||.+...   .+..++.|
T Consensus      1196 ~E~~~~di----------------P~~s~t~vTaLS~~------~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h 1253 (1387)
T KOG1517|consen 1196 KEQVVADI----------------PYGSSTLVTALSAD------LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREH 1253 (1387)
T ss_pred             cceeEeec----------------ccCCCccceeeccc------ccCCceEEEeecCCceEEeecccCCccccceeeccc
Confidence            65443222                22223444544321      3357899999999999999988643   34455555


Q ss_pred             cccccccceEEEEECCCCcE-EEE-EcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC
Q 022019          168 DAVDEITAAFSVAFNPTGTK-IFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ  245 (304)
Q Consensus       168 ~~~~~~~~v~~i~~~~~~~~-l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  245 (304)
                      ..   ..+|..+.+.+.|-. |++ +.+|.|++||+|....  ..+...... ....+.++++..++ ...++|+|+. +
T Consensus      1254 ~~---~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~--e~~~~iv~~-~~yGs~lTal~VH~-hapiiAsGs~-q 1325 (1387)
T KOG1517|consen 1254 ND---VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK--ETFLTIVAH-WEYGSALTALTVHE-HAPIIASGSA-Q 1325 (1387)
T ss_pred             CC---cccceeEEeecCCCcceeeeccCCeEEEEecccCcc--cccceeeec-cccCccceeeeecc-CCCeeeecCc-c
Confidence            43   224889999987643 664 5999999999998411  111111111 11123589999999 7779999998 9


Q ss_pred             eEEEEecCCceEeEEeccc-------cCCeEEEEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          246 TSAIYREDNMELLYVLHGQ-------EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       246 ~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      .|+||++. |+.+..++.+       .+.+.+++|+|..-.|++|+ .|.+|.||...++.
T Consensus      1326 ~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~-~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1326 LIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS-ADSTVSIYSCEKPR 1384 (1387)
T ss_pred             eEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhcc-CCceEEEeecCCcC
Confidence            99999984 4444444322       34689999999999999998 99999999887653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.73  E-value=1.8e-14  Score=120.52  Aligned_cols=209  Identities=27%  Similarity=0.414  Sum_probs=153.5

Q ss_pred             eecCCC-CceeEEEE-cCCCC-eEEEecC-CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           55 TSSIPN-NFLKGIKW-SPDGS-SFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        55 ~~~~h~-~~V~~i~~-s~~~~-~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      .+.++. ..+..+.+ ++++. .++..+. |+.+.+|+...                ..........|...+..+.|   
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~---  163 (466)
T COG2319         103 SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST----------------PGKLIRTLEGHSESVTSLAF---  163 (466)
T ss_pred             EEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC----------------CCeEEEEEecCcccEEEEEE---
Confidence            444433 47888888 88887 5555455 99999999874                01122244556677777776   


Q ss_pred             cceeCCCccEEEEEeC-CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCc-EEEE-EcCCeEEEEEcCCCCcc
Q 022019          131 MSASDPTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFA-GYNKSVRVFDVHRPGRD  207 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~-~~d~~i~v~d~~~~~~~  207 (304)
                          +|++..+++++. |+.+++|++..+.....+..+..     .+.+++|+|++. .+++ +.|+.|++||.... ..
T Consensus       164 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~  233 (466)
T COG2319         164 ----SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD-----PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KL  233 (466)
T ss_pred             ----CCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC-----ceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cE
Confidence                678878888885 99999999998777777766443     899999999998 5555 59999999987632 11


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE-eEEeccccCCeEEEEECCCCcEEEEeecc
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLHGQEGGVTHVQFSRDGNYLYTGGRK  286 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  286 (304)
                      .   ..   ...+|.... ...|+| .+.++++++.|+.+++|+++.... +..+.+|...+.++.|+|++..+++++ .
T Consensus       234 ~---~~---~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~  304 (466)
T COG2319         234 L---RS---TLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS-S  304 (466)
T ss_pred             E---ee---ecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee-C
Confidence            1   10   224455543 338999 557888999999999999986654 444467888999999999999999887 7


Q ss_pred             CCeEEEEecccceee
Q 022019          287 DPYILCWDLRKAVQV  301 (304)
Q Consensus       287 d~~i~vwd~~~~~~~  301 (304)
                      |+.+.+|+..+....
T Consensus       305 d~~~~~~~~~~~~~~  319 (466)
T COG2319         305 DGTVRLWDLETGKLL  319 (466)
T ss_pred             CCcEEEEEcCCCceE
Confidence            899999998876543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=1.9e-14  Score=107.74  Aligned_cols=223  Identities=13%  Similarity=0.151  Sum_probs=141.0

Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcc----------------ccccccccccCC------ccceEEEeecCC
Q 022019           63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY----------------DVNACSLAKDQD------SYEASLVVTEGE  120 (304)
Q Consensus        63 V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~----------------~~~~~~~~~~~~------~~~~~~~~~~~~  120 (304)
                      ..+++|+.|...++.|..+| .+||+.+.-+...                ..+-.....+..      ..+....-....
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~   86 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER   86 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence            44589999999998887776 7999986432200                000000000000      011111111112


Q ss_pred             eEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcC-CCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEE
Q 022019          121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVR  197 (304)
Q Consensus       121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~  197 (304)
                      .+..+.|.....++.-....+++.- .+.|++|... +.+....+.....   +..+.++.=..+..+|+ =| .-|.|.
T Consensus        87 ~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~N---PkGlC~~~~~~~k~~LafPg~k~GqvQ  162 (346)
T KOG2111|consen   87 CIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSN---PKGLCSLCPTSNKSLLAFPGFKTGQVQ  162 (346)
T ss_pred             EEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccC---CCceEeecCCCCceEEEcCCCccceEE
Confidence            2333333222111111344666664 5679999987 4444454443331   12344444333445666 35 779999


Q ss_pred             EEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCe-EEEEecCCceEeEEeccc--cCCeEEEEEC
Q 022019          198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-SAIYREDNMELLYVLHGQ--EGGVTHVQFS  274 (304)
Q Consensus       198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~--~~~v~~~~~~  274 (304)
                      |-|+......      ......+|...|.+++.+- .|.++|++|..|+ |||||..+++++.+++..  ...|.+++||
T Consensus       163 i~dL~~~~~~------~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS  235 (346)
T KOG2111|consen  163 IVDLASTKPN------APSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS  235 (346)
T ss_pred             EEEhhhcCcC------CceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence            9999764221      1122378999999999999 7889999999998 899999999999999733  3479999999


Q ss_pred             CCCcEEEEeeccCCeEEEEecccc
Q 022019          275 RDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       275 ~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      |++.+|++++ +.|+|+++.++..
T Consensus       236 p~~s~LavsS-dKgTlHiF~l~~~  258 (346)
T KOG2111|consen  236 PNSSWLAVSS-DKGTLHIFSLRDT  258 (346)
T ss_pred             CCccEEEEEc-CCCeEEEEEeecC
Confidence            9999999999 9999999998763

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.72  E-value=2.5e-15  Score=130.40  Aligned_cols=224  Identities=15%  Similarity=0.181  Sum_probs=150.7

Q ss_pred             eeeeecCCCCceeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE-eecCCeEEEEeecC
Q 022019           52 QFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV-VTEGESVYDFCWFP  129 (304)
Q Consensus        52 ~~~~~~~h~~~V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~  129 (304)
                      .++.+..|...|..++.++. +.+|+|||.||+|++|+...-....           ........ ...+..+..+..  
T Consensus      1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-----------~s~rS~ltys~~~sr~~~vt~-- 1106 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-----------GSARSELTYSPEGSRVEKVTM-- 1106 (1431)
T ss_pred             EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-----------ceeeeeEEEeccCCceEEEEe--
Confidence            44567789999999999884 5999999999999999987432211           11111122 225566666655  


Q ss_pred             ccceeCCCccEEEEEeCCCCEEEEEcCCC--eeeE--EeecccccccccceEEEEECCC-Cc-EEEE-EcCCeEEEEEcC
Q 022019          130 HMSASDPTSCVFASTTRDHPIHLWDATTG--LLRC--TYRAYDAVDEITAAFSVAFNPT-GT-KIFA-GYNKSVRVFDVH  202 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~--~~~~~~~~~~~~~v~~i~~~~~-~~-~l~~-~~d~~i~v~d~~  202 (304)
                           -+.+..+|+++.||.|.+.++...  ....  .............|..-+|... +. .++. ...+.|..||++
T Consensus      1107 -----~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1107 -----CGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred             -----ccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence                 447889999999999999998752  1111  1111111111112333344332 33 4444 488999999998


Q ss_pred             CCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-cccCCeEEEEECCC---Cc
Q 022019          203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRD---GN  278 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~---~~  278 (304)
                      +......    .+  .....+.|++++.+| .+.++++|+..|.+.+||++-+.++..+. ++..++..+..+|-   ..
T Consensus      1182 ~~~~~w~----lk--~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1182 MRHDAWR----LK--NQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQES 1254 (1431)
T ss_pred             hhhhHHh----hh--cCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCc
Confidence            7432221    11  133456799999999 88899999999999999999999998886 44567777777653   35


Q ss_pred             EEEEeec-cCCeEEEEeccccee
Q 022019          279 YLYTGGR-KDPYILCWDLRKAVQ  300 (304)
Q Consensus       279 ~l~~~~~-~d~~i~vwd~~~~~~  300 (304)
                      ..++++. ..+.|.+|++.+|.+
T Consensus      1255 ~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1255 VSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             eEEEecccCCCceeeeecccCcc
Confidence            6666663 578999999998854

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.72  E-value=3.3e-15  Score=122.36  Aligned_cols=201  Identities=14%  Similarity=0.295  Sum_probs=144.4

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      .|..++|-|||..|+.+..+ .+.+||..++....+                 ..+|...|++++|       +.+|+.+
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqt-----------------LKgHKDtVycVAy-------s~dGkrF   68 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQP-----------------LKGHKDTVYCVAY-------AKDGKRF   68 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcccccc-----------------cccccceEEEEEE-------ccCCcee
Confidence            79999999999988877644 799999997766543                 3456689999998       8899999


Q ss_pred             EEEeCCCCEEEEEcCC-C-------eeeEEeeccc------------------------ccccccceEEEEECCCCcEEE
Q 022019          142 ASTTRDHPIHLWDATT-G-------LLRCTYRAYD------------------------AVDEITAAFSVAFNPTGTKIF  189 (304)
Q Consensus       142 ~~~~~dg~i~i~d~~~-~-------~~~~~~~~~~------------------------~~~~~~~v~~i~~~~~~~~l~  189 (304)
                      ++|+.|..|.+|+-.- |       ..++.+....                        .......+.+.+|..||++++
T Consensus        69 ASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqyla  148 (1081)
T KOG1538|consen   69 ASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLA  148 (1081)
T ss_pred             ccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEE
Confidence            9999999999998542 1       1111111100                        011234688999999999999


Q ss_pred             EE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCC----cEEEEEecCCeEEEEecCCceEeEEeccc
Q 022019          190 AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT----GMLAIGSYSQTSAIYREDNMELLYVLHGQ  264 (304)
Q Consensus       190 ~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  264 (304)
                      .| .+|+|.+-+-..  .+    ........+...+|.+++|+|..+    ..+++.....++.+|.+. |+.+..-+.-
T Consensus       149 lG~~nGTIsiRNk~g--Ee----k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L  221 (1081)
T KOG1538|consen  149 LGMFNGTISIRNKNG--EE----KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRAL  221 (1081)
T ss_pred             EeccCceEEeecCCC--Cc----ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccC
Confidence            88 999999975432  21    112222356778899999999543    367777777788888773 4444333323


Q ss_pred             cCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       265 ~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      .-.-.++.+.|+|.+++.|| .|+.+.+|--
T Consensus       222 ~FdP~CisYf~NGEy~LiGG-sdk~L~~fTR  251 (1081)
T KOG1538|consen  222 NFDPCCISYFTNGEYILLGG-SDKQLSLFTR  251 (1081)
T ss_pred             CCCchhheeccCCcEEEEcc-CCCceEEEee
Confidence            33457899999999999999 9999998853

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.72  E-value=3.3e-15  Score=110.18  Aligned_cols=113  Identities=20%  Similarity=0.381  Sum_probs=86.9

Q ss_pred             ceEEEEECCCCcEEE--EE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec---CCeEE
Q 022019          175 AAFSVAFNPTGTKIF--AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQTSA  248 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~--~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~  248 (304)
                      +|.+++|+|+|+.++  .| .++.|.+||++.     ..+..+      ....+..+.|+| .++++++|+.   .|.|.
T Consensus        61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-----~~i~~~------~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~  128 (194)
T PF08662_consen   61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-----KKIFSF------GTQPRNTISWSP-DGRFLVLAGFGNLNGDLE  128 (194)
T ss_pred             ceEEEEECcCCCEEEEEEccCCcccEEEcCcc-----cEeEee------cCCCceEEEECC-CCCEEEEEEccCCCcEEE
Confidence            699999999999877  34 678999999963     121221      234577899999 6777777764   46799


Q ss_pred             EEecCCceEeEEeccccCCeEEEEECCCCcEEEEeec-----cCCeEEEEecccceeee
Q 022019          249 IYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR-----KDPYILCWDLRKAVQVV  302 (304)
Q Consensus       249 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~d~~i~vwd~~~~~~~~  302 (304)
                      +||.++.+.+.+.. |. .++.++|+|||++|+++..     .|+.++||+.. |+++.
T Consensus       129 ~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~  184 (194)
T PF08662_consen  129 FWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY  184 (194)
T ss_pred             EEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence            99999999888776 33 4789999999999999873     37889999994 65543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.71  E-value=1.7e-16  Score=126.50  Aligned_cols=147  Identities=14%  Similarity=0.212  Sum_probs=112.9

Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~  212 (304)
                      .++|+|.-|+++++||.|++|. ++|....++.....     +|+|++|.|+.+.++-+..+.+.|=.+......+    
T Consensus       111 RW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~-----~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i----  180 (737)
T KOG1524|consen  111 RWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEE-----SIRCARWAPNSNSIVFCQGGHISIKPLAANSKII----  180 (737)
T ss_pred             ccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCc-----eeEEEEECCCCCceEEecCCeEEEeeccccccee----
Confidence            3488999999999999999998 55655544443333     8999999999888886666777776665432211    


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                          ...+|.+.|.++.|+| ...++++|++|-..+|||. .|.+++.-..|+.+|++++|.|+ +.++.++  -+++++
T Consensus       181 ----~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S--~nt~R~  251 (737)
T KOG1524|consen  181 ----RWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWS--YNTARF  251 (737)
T ss_pred             ----EEeccCcEEEEeecCc-cccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeee--eeeeee
Confidence                1268999999999999 7789999999999999996 67788888889999999999999 5555555  455665


Q ss_pred             Eecccc
Q 022019          293 WDLRKA  298 (304)
Q Consensus       293 wd~~~~  298 (304)
                      =..+.|
T Consensus       252 ~~p~~G  257 (737)
T KOG1524|consen  252 SSPRVG  257 (737)
T ss_pred             cCCCcc
Confidence            444444

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.71  E-value=2e-14  Score=120.22  Aligned_cols=209  Identities=28%  Similarity=0.457  Sum_probs=154.3

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCC-CccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG-ISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      ....|...+.++.+.+.+..++.++.|+.+.+|+..... ....                +...+...+..+.+     .
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~-----~  118 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS----------------LEGLHDSSVSKLAL-----S  118 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEE----------------EeccCCCceeeEEE-----E
Confidence            456899999999999999999999999999999988653 1110                11101123333333     1


Q ss_pred             eCCCcc-EEEEEeC-CCCEEEEEcCC-CeeeEEeecccccccccceEEEEECCCCcEEEEE-c-CCeEEEEEcCCCCccc
Q 022019          134 SDPTSC-VFASTTR-DHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y-NKSVRVFDVHRPGRDF  208 (304)
Q Consensus       134 ~~~~~~-~l~~~~~-dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d~~i~v~d~~~~~~~~  208 (304)
                       ++++. .++..+. |+.+.+|+... ......+..+..     .|..+.|+|++..++.+ . ++.+++|++...    
T Consensus       119 -~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  188 (466)
T COG2319         119 -SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE-----SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG----  188 (466)
T ss_pred             -CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcc-----cEEEEEECCCCCEEEecCCCCCceEEEEcCCC----
Confidence             33444 4555444 99999999987 666666666654     88899999999877755 4 999999999761    


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeE-EeccccCCeEEEEECCCCcEEEEeeccC
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVQFSRDGNYLYTGGRKD  287 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~d  287 (304)
                      .....    ..+|...+.+++|+|++..++++++.|+.|++||...+..+. .+.+|.... ...|+|++.++++++ .|
T Consensus       189 ~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d  262 (466)
T COG2319         189 KPLST----LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS-SD  262 (466)
T ss_pred             ceEEe----eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec-CC
Confidence            11111    244788899999999444355555899999999998777777 688888775 448999998888888 99


Q ss_pred             CeEEEEeccccee
Q 022019          288 PYILCWDLRKAVQ  300 (304)
Q Consensus       288 ~~i~vwd~~~~~~  300 (304)
                      +.+++|+++....
T Consensus       263 ~~~~~~~~~~~~~  275 (466)
T COG2319         263 GTIRLWDLRSSSS  275 (466)
T ss_pred             CcEEEeeecCCCc
Confidence            9999999987654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.8e-15  Score=121.51  Aligned_cols=228  Identities=15%  Similarity=0.190  Sum_probs=152.9

Q ss_pred             CCCCceeEEEEcCCCCeE-EEecCCCeEEEeeCCCCCCcccccc----ccccccCCccceEEEeecCC------------
Q 022019           58 IPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNA----CSLAKDQDSYEASLVVTEGE------------  120 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------------  120 (304)
                      .|...-+.|..+|||+|+ |||.+--.|++||+.+..+..+...    ..+..-.+.....+.+....            
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            578888999999999975 5677889999999986544221110    00000001111111111111            


Q ss_pred             ------eEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC
Q 022019          121 ------SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (304)
Q Consensus       121 ------~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  193 (304)
                            .-.+++++      .|... |.+++....|+=++++.|..+..+.....     .++++..++...+|++| .+
T Consensus       129 ~~RIP~~GRDm~y~------~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~-----~lN~v~in~~hgLla~Gt~~  196 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYH------KPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSG-----ELNVVSINEEHGLLACGTED  196 (703)
T ss_pred             eeecCcCCcccccc------CCCcc-EEEeecCcceEEEEccccccccccccccc-----cceeeeecCccceEEecccC
Confidence                  11122221      12233 44555566799999999998888876654     89999999999999988 79


Q ss_pred             CeEEEEEcCCCCccceeeeeeecccccc-----ccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-cccCC
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQ-----AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGG  267 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~  267 (304)
                      |.|..||.+..+.........  ....+     ...|+++.|+. ++..+++|+.+|.+.|||++..+++..-. +..-+
T Consensus       197 g~VEfwDpR~ksrv~~l~~~~--~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p  273 (703)
T KOG2321|consen  197 GVVEFWDPRDKSRVGTLDAAS--SVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP  273 (703)
T ss_pred             ceEEEecchhhhhheeeeccc--ccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccc
Confidence            999999999854432221111  11222     23499999998 68899999999999999999998876554 33458


Q ss_pred             eEEEEECCC--CcEEEEeeccCCeEEEEecccceeee
Q 022019          268 VTHVQFSRD--GNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       268 v~~~~~~~~--~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      |..+.|.+.  +..|++.  +...++|||-.+|+...
T Consensus       274 i~~l~~~~~~~q~~v~S~--Dk~~~kiWd~~~Gk~~a  308 (703)
T KOG2321|consen  274 IKKLDWQDTDQQNKVVSM--DKRILKIWDECTGKPMA  308 (703)
T ss_pred             eeeecccccCCCceEEec--chHHhhhcccccCCcee
Confidence            999999775  4566665  47789999999998654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.70  E-value=4.3e-15  Score=111.25  Aligned_cols=213  Identities=16%  Similarity=0.228  Sum_probs=152.2

Q ss_pred             cceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC
Q 022019           50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (304)
Q Consensus        50 ~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (304)
                      ++..+++..|...|++|+|+|..+.|++|+.|..-.||....+              .........+.++...+++.|  
T Consensus        45 w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~--------------~~WkptlvLlRiNrAAt~V~W--  108 (361)
T KOG1523|consen   45 WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG--------------GTWKPTLVLLRINRAATCVKW--  108 (361)
T ss_pred             ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC--------------CeeccceeEEEeccceeeEee--
Confidence            4566788999999999999999999999999999999987422              123334467778889999999  


Q ss_pred             ccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcc-
Q 022019          130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRD-  207 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~-  207 (304)
                           +|.++.|++|+..+.|.||-++....-..-+. -.....+.|.+++|+|++-++++| .|+..+||..--.+-. 
T Consensus       109 -----sP~enkFAVgSgar~isVcy~E~ENdWWVsKh-ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vde  182 (361)
T KOG1523|consen  109 -----SPKENKFAVGSGARLISVCYYEQENDWWVSKH-IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDE  182 (361)
T ss_pred             -----cCcCceEEeccCccEEEEEEEecccceehhhh-hCCccccceeeeeccCCcceecccccCcceeEEEEeeecccc
Confidence                 77899999999999999999876543321111 111233489999999999999976 9999999976321100 


Q ss_pred             ---------ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce-EeEEeccccCCeEEEEECCCC
Q 022019          208 ---------FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGGVTHVQFSRDG  277 (304)
Q Consensus       208 ---------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~  277 (304)
                               ...+..+........+.+..+.|+| .+..|+-.+.|+.+.+-|..... .+..+....-+..++.|-.+.
T Consensus       183 kpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~  261 (361)
T KOG1523|consen  183 KPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN  261 (361)
T ss_pred             CCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC
Confidence                     0111222222234567899999999 77788999999999999987654 344444344677888886544


Q ss_pred             cEEEEeeccC
Q 022019          278 NYLYTGGRKD  287 (304)
Q Consensus       278 ~~l~~~~~~d  287 (304)
                      . ++.++ .|
T Consensus       262 ~-vv~ag-~~  269 (361)
T KOG1523|consen  262 S-VVAAG-YD  269 (361)
T ss_pred             c-eeecC-CC
Confidence            3 33344 44

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.5e-14  Score=120.46  Aligned_cols=198  Identities=12%  Similarity=0.091  Sum_probs=122.1

Q ss_pred             ecCCCCceeEEEEcCCCCeEEEec---CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           56 SSIPNNFLKGIKWSPDGSSFLTSS---EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~~~l~s~~---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      +..+...+...+|+|||+.|+..+   .+..|.+|++.+++...-                  ......+....      
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l------------------~~~~~~~~~~~------  249 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV------------------ASFPRHNGAPA------  249 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc------------------cCCCCCcCCeE------
Confidence            345667899999999999888654   245788999875532100                  00011122334      


Q ss_pred             eeCCCccEEEEE-eCCC--CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEE--EcCCCC
Q 022019          133 ASDPTSCVFAST-TRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVF--DVHRPG  205 (304)
Q Consensus       133 ~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~--d~~~~~  205 (304)
                       |+|||+.|+.. +.+|  .|++||+.+++....... .     ..+....|+|+|+.|+ ++ .++...||  |+..+ 
T Consensus       250 -~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~-----~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-  321 (429)
T PRK03629        250 -FSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-R-----SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-  321 (429)
T ss_pred             -ECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-C-----CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-
Confidence             48899888765 4455  489999988765443222 1     1567899999999887 55 34444555  55432 


Q ss_pred             ccceeeeeeeccccccccceeEEEeecCCCcEEEEEe-cC--CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEE
Q 022019          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YS--QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT  282 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  282 (304)
                       ...   .+.    ..........|+|+ +..|+..+ .+  ..|.+||+.+++.. .+.. ........|+|||++|+.
T Consensus       322 -~~~---~lt----~~~~~~~~~~~SpD-G~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~  390 (429)
T PRK03629        322 -APQ---RIT----WEGSQNQDADVSSD-GKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIY  390 (429)
T ss_pred             -CeE---Eee----cCCCCccCEEECCC-CCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEE
Confidence             111   111    11223457889994 55555544 33  35888999877643 3332 123456889999999998


Q ss_pred             eeccCCe---EEEEeccc
Q 022019          283 GGRKDPY---ILCWDLRK  297 (304)
Q Consensus       283 ~~~~d~~---i~vwd~~~  297 (304)
                      ++ .++.   +.++++..
T Consensus       391 ~s-~~~~~~~l~~~~~~G  407 (429)
T PRK03629        391 SS-SQGMGSVLNLVSTDG  407 (429)
T ss_pred             EE-cCCCceEEEEEECCC
Confidence            88 6653   67777743

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=6.2e-16  Score=124.70  Aligned_cols=70  Identities=20%  Similarity=0.329  Sum_probs=62.8

Q ss_pred             cceeEEEeecCCCcEEEEEecCCeEEEEecCCc-eEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          223 GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       223 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      ..|..++.+| +|..|++|+.|+.+..||+.-. ++.+++.-|...+++++|++.-.++++|+ .||++.|+.
T Consensus       608 kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~s-dDgtv~Vfh  678 (733)
T KOG0650|consen  608 KWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGS-DDGTVIVFH  678 (733)
T ss_pred             eeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeec-CCCcEEEEe
Confidence            3488999999 7888999999999999999754 68888999999999999999999999999 999999984

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=2.5e-14  Score=119.50  Aligned_cols=201  Identities=15%  Similarity=0.117  Sum_probs=124.5

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCC---CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      .+..|...+.+.+|+|||+.|+.++.+   ..|.+||+.++...                  ............      
T Consensus       198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~------------------~l~~~~g~~~~~------  253 (433)
T PRK04922        198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE------------------LVASFRGINGAP------  253 (433)
T ss_pred             EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE------------------EeccCCCCccCc------
Confidence            345677789999999999999887643   46999998755321                  000011112233      


Q ss_pred             ceeCCCccEEE-EEeCCC--CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCe--EEEEEcCCC
Q 022019          132 SASDPTSCVFA-STTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKS--VRVFDVHRP  204 (304)
Q Consensus       132 ~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~--i~v~d~~~~  204 (304)
                       +|+|+|+.++ +.+.+|  .|++||+.+++... +..+..     .....+|+|||+.|+ ++ .++.  |+++|+..+
T Consensus       254 -~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~-----~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g  326 (433)
T PRK04922        254 -SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFG-----IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG  326 (433)
T ss_pred             -eECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCC-----CccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence             4488998765 445555  59999998876543 322221     345789999999888 44 4454  666666442


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC-C--eEEEEecCCceEeEEeccccCCeEEEEECCCCcEEE
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-Q--TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  281 (304)
                      .  ..   .+..  .  .......+|+| ++..|+..+.+ +  .|.+||+.+++.. .+. +........|+|||++|+
T Consensus       327 ~--~~---~lt~--~--g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~  394 (433)
T PRK04922        327 S--AE---RLTF--Q--GNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVL  394 (433)
T ss_pred             C--eE---Eeec--C--CCCccCEEECC-CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEE
Confidence            1  11   1111  1  12244689999 55555554433 3  5999999877654 343 233456789999999988


Q ss_pred             Eeecc--CCeEEEEecccc
Q 022019          282 TGGRK--DPYILCWDLRKA  298 (304)
Q Consensus       282 ~~~~~--d~~i~vwd~~~~  298 (304)
                      ..+..  .+.|.++++..+
T Consensus       395 ~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        395 YATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EEEecCCceEEEEEECCCC
Confidence            77622  246778887543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.68  E-value=1.1e-15  Score=115.59  Aligned_cols=231  Identities=15%  Similarity=0.259  Sum_probs=155.0

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCC-ccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGI-SYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      ..+-|.++.|...|.+||||..+|.|.++.-..... .+...... ........-.....-...|..+.|.+.     .+
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~f-qshepEFDYLkSleieEKinkIrw~~~-----~n   97 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEF-QSHEPEFDYLKSLEIEEKINKIRWLDD-----GN   97 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeee-eccCcccchhhhhhhhhhhhhceecCC-----CC
Confidence            456799999999999999999999999997543321 11110000 000001111111222356777888653     34


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeE---------------Ee-----eccc-----------ccccccceEEEEECCCCc
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRC---------------TY-----RAYD-----------AVDEITAAFSVAFNPTGT  186 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~---------------~~-----~~~~-----------~~~~~~~v~~i~~~~~~~  186 (304)
                      ...++....|.+|++|.+.......               .+     ..+.           ...|...|.+|.++.|+.
T Consensus        98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E  177 (433)
T KOG1354|consen   98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE  177 (433)
T ss_pred             ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence            4567778889999999886422111               00     0000           123555789999999999


Q ss_pred             EEEEEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE------eEE
Q 022019          187 KIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL------LYV  260 (304)
Q Consensus       187 ~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~------~~~  260 (304)
                      .++++.|=.|.+|.++.....+..+.............|++..|+|....+++-.+..|+|++.|++...+      +..
T Consensus       178 t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE  257 (433)
T KOG1354|consen  178 TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE  257 (433)
T ss_pred             eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence            99999999999999987766666555444444445566999999998788899999999999999985421      111


Q ss_pred             e----------ccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          261 L----------HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       261 ~----------~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      .          ..--..|..+.|+++|+|+++-.  =-+|++||+..
T Consensus       258 epedp~~rsffseiIsSISDvKFs~sGryilsRD--yltvk~wD~nm  302 (433)
T KOG1354|consen  258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD--YLTVKLWDLNM  302 (433)
T ss_pred             cccCCcchhhHHHHhhhhhceEEccCCcEEEEec--cceeEEEeccc
Confidence            1          11123688999999999999754  47899999943

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=5e-14  Score=117.92  Aligned_cols=202  Identities=14%  Similarity=0.145  Sum_probs=126.9

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecC---CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSE---DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      .+..|...+.+.+|+|||+.|+..+.   +..|.+||+.++...                  ........+....|    
T Consensus       196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~------------------~l~~~~g~~~~~~~----  253 (435)
T PRK05137        196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE------------------LVGNFPGMTFAPRF----  253 (435)
T ss_pred             EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE------------------EeecCCCcccCcEE----
Confidence            45678889999999999998887653   468999999755321                  11111223334444    


Q ss_pred             ceeCCCccEEE-EEeCCCC--EEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCC--eEEEEEcCCC
Q 022019          132 SASDPTSCVFA-STTRDHP--IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRP  204 (304)
Q Consensus       132 ~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~--~i~v~d~~~~  204 (304)
                         +|+|+.|+ +.+.++.  |++||+.++.... +..+..     ......|+|||+.|+ ++ .++  .|+++|+...
T Consensus       254 ---SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~-----~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        254 ---SPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPA-----IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             ---CCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCCC-----ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence               88998765 4555554  7788988776543 332221     455789999999888 44 333  6778887542


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC---CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEE
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  281 (304)
                        ...   .+.    .....+....|+| ++..|+..+.+   ..|.+||+..+.. ..+. ....+..+.|+|||++|+
T Consensus       325 --~~~---~lt----~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~  392 (435)
T PRK05137        325 --NPR---RIS----FGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIM  392 (435)
T ss_pred             --CeE---Eee----cCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEE
Confidence              111   111    1123356688999 45555554433   3588888755433 3333 223467899999999987


Q ss_pred             EeeccC-----CeEEEEecccce
Q 022019          282 TGGRKD-----PYILCWDLRKAV  299 (304)
Q Consensus       282 ~~~~~d-----~~i~vwd~~~~~  299 (304)
                      ..+...     ..|.++|+..+.
T Consensus       393 ~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        393 FFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             EEEccCCCCCcceEEEEECCCCc
Confidence            765222     368888886643

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=4.1e-14  Score=119.06  Aligned_cols=216  Identities=16%  Similarity=0.228  Sum_probs=146.9

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+.-|.+.|+++.|+++|.+|++|+..|.+.+|.+.+++.                  .++..-+.+|..+.+       
T Consensus       246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k------------------qfLPRLgs~I~~i~v-------  300 (792)
T KOG1963|consen  246 LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK------------------QFLPRLGSPILHIVV-------  300 (792)
T ss_pred             EEEecccccceeEEecCCceEeecccceEEEEEeecCCCc------------------ccccccCCeeEEEEE-------
Confidence            6678999999999999999999999999999999987652                  133344578888877       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccccc------ccccceEEEEECCC-CcEEEEEcCCeEEEEEcCCCCcc
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV------DEITAAFSVAFNPT-GTKIFAGYNKSVRVFDVHRPGRD  207 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~~v~~i~~~~~-~~~l~~~~d~~i~v~d~~~~~~~  207 (304)
                      +||+.+.+....|..|.+-...+.....++.+....      ....-.+.+.++|. +..++.|..+.|.+||+.+....
T Consensus       301 S~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i  380 (792)
T KOG1963|consen  301 SPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI  380 (792)
T ss_pred             cCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence            789999999999999999987655443333322111      12234567888884 44444678888888887553211


Q ss_pred             ceeeeee-------------------------------------------------------------ecccccccccee
Q 022019          208 FEKYSTL-------------------------------------------------------------KGNKEGQAGIMS  226 (304)
Q Consensus       208 ~~~~~~~-------------------------------------------------------------~~~~~~~~~~v~  226 (304)
                      . .+...                                                             ......|...+.
T Consensus       381 ~-~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~v  459 (792)
T KOG1963|consen  381 Y-KLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFV  459 (792)
T ss_pred             e-eEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeE
Confidence            0 00000                                                             001133444444


Q ss_pred             EEEeecCCCc-EEEEEecCCeEEEEecCCc----------eEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          227 AIAFSPTHTG-MLAIGSYSQTSAIYREDNM----------ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       227 ~~~~~p~~~~-~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      ..++.+.... .+++++.||.++||-+...          .+...-.-|..++++++|+.||..|+. + .|++|.+||.
T Consensus       460 at~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~-s-~~~~Itiwd~  537 (792)
T KOG1963|consen  460 ATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV-S-FDDTITIWDY  537 (792)
T ss_pred             EEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE-e-cCCEEEEecC
Confidence            4444432343 8899999999999987322          222222247889999999999976655 4 6999999999


Q ss_pred             ccc
Q 022019          296 RKA  298 (304)
Q Consensus       296 ~~~  298 (304)
                      .+.
T Consensus       538 ~~~  540 (792)
T KOG1963|consen  538 DTK  540 (792)
T ss_pred             CCh
Confidence            884

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.67  E-value=5.1e-15  Score=118.11  Aligned_cols=165  Identities=21%  Similarity=0.284  Sum_probs=119.0

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCcc-----
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD-----  207 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~-----  207 (304)
                      .+.+--++.|-..|.|.+.|....+....+.... ......|+++.|-|.+..++ ++ .+|.+++||.......     
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r-~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~  260 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEER-LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY  260 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcc-cccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence            4566678888889999999876533222222211 12234899999999554433 44 9999999987432110     


Q ss_pred             --------ceeeee-------eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEE
Q 022019          208 --------FEKYST-------LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ  272 (304)
Q Consensus       208 --------~~~~~~-------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~  272 (304)
                              +.....       ......--.+.|..++|+| ++.+||+.+.||.++|||..+.+++..++..-+...|++
T Consensus       261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvc  339 (636)
T KOG2394|consen  261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVC  339 (636)
T ss_pred             cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEE
Confidence                    000000       0000111234688999999 888999999999999999999998888887788999999


Q ss_pred             ECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          273 FSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       273 ~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      |||||+||++|| .|.-|.||.+...+.+.
T Consensus       340 WSPDGKyIvtGG-EDDLVtVwSf~erRVVA  368 (636)
T KOG2394|consen  340 WSPDGKYIVTGG-EDDLVTVWSFEERRVVA  368 (636)
T ss_pred             EcCCccEEEecC-CcceEEEEEeccceEEE
Confidence            999999999999 99999999998886653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.4e-14  Score=111.59  Aligned_cols=209  Identities=17%  Similarity=0.209  Sum_probs=145.6

Q ss_pred             cCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecC---CeEEEEeecCccce
Q 022019           57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG---ESVYDFCWFPHMSA  133 (304)
Q Consensus        57 ~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~  133 (304)
                      ..|...|.|++|....+++.+|+.+++|.+.|+.+.+..                  ....+.   ..|+.+..      
T Consensus       102 ~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi------------------~V~~~~~~~~~VY~m~~------  157 (609)
T KOG4227|consen  102 HPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI------------------YVANENNNRGDVYHMDQ------  157 (609)
T ss_pred             CccccceEEEEEccCCeeEecCCCcceeEeeecccceee------------------eeecccCcccceeeccc------
Confidence            467799999999999999999999999999999865432                  222222   36777766      


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceee
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                       +|..+.|++.+.+|.|.+||.+.......+....  .......++.|+|....|+ +. ..+.+.+||++....+....
T Consensus       158 -~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A--N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~  234 (609)
T KOG4227|consen  158 -HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA--NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQR  234 (609)
T ss_pred             -CCCCceEEEEecCceEEEEeccCCCCCCceeeec--CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhh
Confidence             5567789999999999999998654222221111  1223778999999765544 54 77889999998754321110


Q ss_pred             eeee------------------------------------------cccc----c--cccceeEEEeecCCCcEEEEEec
Q 022019          212 STLK------------------------------------------GNKE----G--QAGIMSAIAFSPTHTGMLAIGSY  243 (304)
Q Consensus       212 ~~~~------------------------------------------~~~~----~--~~~~v~~~~~~p~~~~~l~~~~~  243 (304)
                      ....                                          ....    +  ....+.+++|-.  ..-+++|+.
T Consensus       235 ~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD  312 (609)
T KOG4227|consen  235 SMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID--DYTVATGSD  312 (609)
T ss_pred             hccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec--ceeeeccCc
Confidence            0000                                          0000    0  011255666664  335899999


Q ss_pred             CCeEEEEecCCc-----------------------eEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          244 SQTSAIYREDNM-----------------------ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       244 dg~i~i~d~~~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      +-.|++|.+...                       +.+..+++|..-+..+.|+|...+|++.| -.+.+++|.-
T Consensus       313 ~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSG-VE~~~KlWS~  386 (609)
T KOG4227|consen  313 HWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSG-VENSFKLWSD  386 (609)
T ss_pred             ccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccc-hhhheecccc
Confidence            999999986411                       23456789999999999999999999988 8999999964

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=4.4e-14  Score=117.73  Aligned_cols=200  Identities=15%  Similarity=0.172  Sum_probs=121.0

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCC---CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      .+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.++....                 + ...........     
T Consensus       190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-----------------l-~~~~g~~~~~~-----  246 (427)
T PRK02889        190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-----------------V-ANFKGSNSAPA-----  246 (427)
T ss_pred             EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-----------------e-ecCCCCccceE-----
Confidence            344677889999999999998877643   459999997653210                 0 01112223344     


Q ss_pred             ceeCCCccEEE-EEeCCCCEEEEE--cCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCc
Q 022019          132 SASDPTSCVFA-STTRDHPIHLWD--ATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGR  206 (304)
Q Consensus       132 ~~~~~~~~~l~-~~~~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~  206 (304)
                        |+|||+.|+ +.+.+|...||.  +..+.. ..+..+..     ......|+|||+.|+ ++ .++...+|.+...+.
T Consensus       247 --~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~-----~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g  318 (427)
T PRK02889        247 --WSPDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQSSG-----IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG  318 (427)
T ss_pred             --ECCCCCEEEEEEccCCCceEEEEECCCCCc-EECCCCCC-----CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence              488998776 456777766654  444442 33332221     345678999999888 55 456667776643222


Q ss_pred             cceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC---eEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEe
Q 022019          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG  283 (304)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  283 (304)
                      ....+   ..  .+  .......|+| +++.|+..+.++   .|.+||+.+++.. .+.. ........|+|||++|+.+
T Consensus       319 ~~~~l---t~--~g--~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~-~~~~~~p~~spdg~~l~~~  388 (427)
T PRK02889        319 AAQRV---TF--TG--SYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQVT-ALTD-TTRDESPSFAPNGRYILYA  388 (427)
T ss_pred             ceEEE---ec--CC--CCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCCeE-EccC-CCCccCceECCCCCEEEEE
Confidence            21111   11  11  2234578999 555666555443   5999999877644 3332 2334678999999999888


Q ss_pred             eccCCe--EEEEec
Q 022019          284 GRKDPY--ILCWDL  295 (304)
Q Consensus       284 ~~~d~~--i~vwd~  295 (304)
                      +...|.  +.+.++
T Consensus       389 ~~~~g~~~l~~~~~  402 (427)
T PRK02889        389 TQQGGRSVLAAVSS  402 (427)
T ss_pred             EecCCCEEEEEEEC
Confidence            733333  555555

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=4.8e-14  Score=118.64  Aligned_cols=236  Identities=14%  Similarity=0.100  Sum_probs=155.7

Q ss_pred             eeecCCCCceeEEEEcCCC---CeEEEecCCCeEEEeeCCCCCCcccccccc------cccc-CCccceE---------E
Q 022019           54 RTSSIPNNFLKGIKWSPDG---SSFLTSSEDKTLRIFSLPENGISYDVNACS------LAKD-QDSYEAS---------L  114 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~---~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~------~~~~-~~~~~~~---------~  114 (304)
                      +.+.+|..+++.+.+.|..   .++.+++.||.|++||..++.+...+....      .... -+.....         +
T Consensus        51 ~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~  130 (792)
T KOG1963|consen   51 TSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSIL  130 (792)
T ss_pred             hhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceee
Confidence            3788999999999999844   478899999999999998876533221110      0000 0000000         0


Q ss_pred             E---ee---------------cCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccce
Q 022019          115 V---VT---------------EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAA  176 (304)
Q Consensus       115 ~---~~---------------~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v  176 (304)
                      .   ..               ....+....-.|..+..++.|......- +..+++|+..++. ...........|...+
T Consensus       131 ~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~  208 (792)
T KOG1963|consen  131 TTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH-MCKIHIYFVPKHT-KHTSSRDITVHHTFNI  208 (792)
T ss_pred             eecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE-eeeEEEEEecccc-eeeccchhhhhhcccc
Confidence            0   00               0000000000134455566666555554 4568899887755 2222222233444468


Q ss_pred             EEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc
Q 022019          177 FSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (304)
Q Consensus       177 ~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~  255 (304)
                      ++.+++|.++++++| .||.|.+|.--..+........+    .-|...|.+++|++ +|.+|++|+..|.+-+|.+.++
T Consensus       209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l----HWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~  283 (792)
T KOG1963|consen  209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL----HWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETG  283 (792)
T ss_pred             eeEEeccccceEEEeccCCcEEEEeccccccccccceEE----EecccccceeEEec-CCceEeecccceEEEEEeecCC
Confidence            999999999999988 99999999654311111111111    34667899999999 7779999999999999999998


Q ss_pred             eEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       256 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      + .+-++.-.++|..+.++||+.+.+... .|+.|.+....+.
T Consensus       284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~-~DNqI~li~~~dl  324 (792)
T KOG1963|consen  284 K-KQFLPRLGSPILHIVVSPDSDLYSLVL-EDNQIHLIKASDL  324 (792)
T ss_pred             C-cccccccCCeeEEEEEcCCCCeEEEEe-cCceEEEEeccch
Confidence            8 444566778999999999999999888 8999999877543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.2e-13  Score=105.38  Aligned_cols=210  Identities=18%  Similarity=0.191  Sum_probs=133.1

Q ss_pred             CCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           60 NNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        60 ~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      ...|+|++|-| .++-|+.|+.. -|.+|..+..........    .........+......+|+++.|       ++||
T Consensus       140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~----~~s~~~~qvl~~pgh~pVtsmqw-------n~dg  207 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIR----MMSTHHLQVLQDPGHNPVTSMQW-------NEDG  207 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccc----cccccchhheeCCCCceeeEEEE-------cCCC
Confidence            45799999999 55678888765 589998763321111000    00111111223333468999999       6688


Q ss_pred             cEEEEEeC-CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeec
Q 022019          139 CVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (304)
Q Consensus       139 ~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~  216 (304)
                      ..+++++. |..|.|||..++...........     .+.-+.|+||+.+|+++ -|+..++|.....       .....
T Consensus       208 t~l~tAS~gsssi~iWdpdtg~~~pL~~~glg-----g~slLkwSPdgd~lfaAt~davfrlw~e~q~-------wt~er  275 (445)
T KOG2139|consen  208 TILVTASFGSSSIMIWDPDTGQKIPLIPKGLG-----GFSLLKWSPDGDVLFAATCDAVFRLWQENQS-------WTKER  275 (445)
T ss_pred             CEEeecccCcceEEEEcCCCCCcccccccCCC-----ceeeEEEcCCCCEEEEecccceeeeehhccc-------ceecc
Confidence            88998875 67899999999887655432222     77889999999999865 9999999965431       11110


Q ss_pred             cccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC--c-------------eEeEEec-----c----ccCCeEEEE
Q 022019          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--M-------------ELLYVLH-----G----QEGGVTHVQ  272 (304)
Q Consensus       217 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--~-------------~~~~~~~-----~----~~~~v~~~~  272 (304)
                      . .-..+.|...+|+|.+..+|++++..-.  +|.+..  .             .++..+.     .    ..+++.+++
T Consensus       276 w-~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~la  352 (445)
T KOG2139|consen  276 W-ILGSGRVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLA  352 (445)
T ss_pred             e-eccCCceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceee
Confidence            0 1123479999999977767777665443  443321  0             1111121     1    145789999


Q ss_pred             ECCCCcEEEEeeccCC--------eEEEEeccc
Q 022019          273 FSRDGNYLYTGGRKDP--------YILCWDLRK  297 (304)
Q Consensus       273 ~~~~~~~l~~~~~~d~--------~i~vwd~~~  297 (304)
                      |.|.|.+|++.- +.+        .|.+||.+.
T Consensus       353 wDpsGeyLav~f-Kg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  353 WDPSGEYLAVIF-KGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             ECCCCCEEEEEE-cCCchhhhhhhhhhhhcccc
Confidence            999999999876 433        356666654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.64  E-value=1e-13  Score=102.26  Aligned_cols=156  Identities=21%  Similarity=0.399  Sum_probs=102.2

Q ss_pred             eEEEEcCCCCeEEEecC----------CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           64 KGIKWSPDGSSFLTSSE----------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        64 ~~i~~s~~~~~l~s~~~----------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      ..+.|+|+|++|+.-..          -|...+|-++..               ......+......+|.+++|      
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~---------------~~~~~~i~l~~~~~I~~~~W------   67 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK---------------NIPVESIELKKEGPIHDVAW------   67 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecC---------------CCccceeeccCCCceEEEEE------
Confidence            46889999997765332          123455554322               12223344444567999999      


Q ss_pred             eCCCccEEEEE--eCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-Ec---CCeEEEEEcCCCCcc
Q 022019          134 SDPTSCVFAST--TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY---NKSVRVFDVHRPGRD  207 (304)
Q Consensus       134 ~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~---d~~i~v~d~~~~~~~  207 (304)
                       +|+|+.|++.  ..++.|.+||++ ++.+..+.  ..     .+..+.|+|+|+++++ |.   .|.|.+||++..   
T Consensus        68 -sP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~-----~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~---  135 (194)
T PF08662_consen   68 -SPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQ-----PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK---  135 (194)
T ss_pred             -CcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CC-----CceEEEECCCCCEEEEEEccCCCcEEEEEECCCC---
Confidence             6788776555  356799999996 54444443  22     6678999999999994 42   477999999852   


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEec------CCeEEEEecCCceEeEEe
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLYVL  261 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~  261 (304)
                       +.+..     ..| ..++.++|+| +++++++++.      |+.++||+. .|+.+...
T Consensus       136 -~~i~~-----~~~-~~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  136 -KKIST-----FEH-SDATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             -EEeec-----ccc-CcEEEEEEcC-CCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence             11111     112 2378999999 6667777664      788999998 46655544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.63  E-value=6.7e-13  Score=107.58  Aligned_cols=226  Identities=18%  Similarity=0.220  Sum_probs=139.2

Q ss_pred             CCceeEEEEcCCCCeEEEecC-CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      ......++++|++++|+++.. +|+|.++++..............          .......+.....-+|+.+.++|++
T Consensus        86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~----------~~g~g~~~~rq~~~h~H~v~~~pdg  155 (345)
T PF10282_consen   86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVR----------HEGSGPNPDRQEGPHPHQVVFSPDG  155 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEE----------SEEEESSTTTTSSTCEEEEEE-TTS
T ss_pred             CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecc----------cCCCCCcccccccccceeEEECCCC
Confidence            345567999999999998875 89999999986422111100000          0000000000112234455669999


Q ss_pred             cEEEEEeC-CCCEEEEEcCCCe--eeE--EeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceee
Q 022019          139 CVFASTTR-DHPIHLWDATTGL--LRC--TYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       139 ~~l~~~~~-dg~i~i~d~~~~~--~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                      +++++... ...|++|++....  ...  .+...    .......+.|+|++++++ +. .++.|.+|++......+...
T Consensus       156 ~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~----~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~  231 (345)
T PF10282_consen  156 RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP----PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI  231 (345)
T ss_dssp             SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS----TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             CEEEEEecCCCEEEEEEEeCCCceEEEeeccccc----cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence            98887643 3469999997654  322  22222    223678999999999998 45 88999999998433344444


Q ss_pred             eeeecccccc--ccceeEEEeecCCCcEEEEEecCCeEEEEecCC--c--eEeEEeccccCCeEEEEECCCCcEEEEeec
Q 022019          212 STLKGNKEGQ--AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--M--ELLYVLHGQEGGVTHVQFSRDGNYLYTGGR  285 (304)
Q Consensus       212 ~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  285 (304)
                      ........+.  ......++++|++..++++...++.|.+|++..  +  +.+..+.......+.+.++|+|++|++++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~  311 (345)
T PF10282_consen  232 QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ  311 (345)
T ss_dssp             EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred             EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence            4333221111  124778999995554555555678899999932  2  445555544455799999999999999987


Q ss_pred             cCCeEEEEecc--cce
Q 022019          286 KDPYILCWDLR--KAV  299 (304)
Q Consensus       286 ~d~~i~vwd~~--~~~  299 (304)
                      .++.|.+|++.  +|+
T Consensus       312 ~s~~v~vf~~d~~tG~  327 (345)
T PF10282_consen  312 DSNTVSVFDIDPDTGK  327 (345)
T ss_dssp             TTTEEEEEEEETTTTE
T ss_pred             CCCeEEEEEEeCCCCc
Confidence            88899999874  453

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.63  E-value=1.6e-15  Score=126.86  Aligned_cols=210  Identities=16%  Similarity=0.209  Sum_probs=148.9

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ++...||.+.|+.++.+.+..++++++.|..|++|.+.++...                 .+..+|.+.|++++|.|.  
T Consensus       225 lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv-----------------svLrghtgavtaiafsP~--  285 (1113)
T KOG0644|consen  225 LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV-----------------SVLRGHTGAVTAIAFSPR--  285 (1113)
T ss_pred             hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH-----------------HHHhccccceeeeccCcc--
Confidence            3478899999999999999999999999999999999865432                 255667799999999663  


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCc--------------------------
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT--------------------------  186 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--------------------------  186 (304)
                               .+.+.||++++||.+- ......+-+.......-+.++.|...+.                          
T Consensus       286 ---------~sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~l  355 (1113)
T KOG0644|consen  286 ---------ASSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLL  355 (1113)
T ss_pred             ---------ccCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccce
Confidence                     3678899999999871 1110000000000001122222222111                          


Q ss_pred             EEE-----------EE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC
Q 022019          187 KIF-----------AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (304)
Q Consensus       187 ~l~-----------~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  254 (304)
                      .++           ++ .+..+.+|++..        ..+.....+|...+..+.++|-+..+..+++.||...|||+-.
T Consensus       356 if~t~ssd~~~~~~~ar~~~~~~vwnl~~--------g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e  427 (1113)
T KOG0644|consen  356 IFVTRSSDLSSIVVTARNDHRLCVWNLYT--------GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE  427 (1113)
T ss_pred             EEEeccccccccceeeeeeeEeeeeeccc--------chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence            111           22 344566666654        2333445778888999999998888899999999999999999


Q ss_pred             ceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       255 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      +.+++.+......+....||+||..++... .-|.+.+.....++.
T Consensus       428 g~pik~y~~gh~kl~d~kFSqdgts~~lsd-~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  428 GIPIKHYFIGHGKLVDGKFSQDGTSIALSD-DHGQLYILGTGQSKS  472 (1113)
T ss_pred             CCcceeeecccceeeccccCCCCceEecCC-CCCceEEeccCCCcc
Confidence            988877764456788899999999999888 889999988766544

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=5.8e-15  Score=118.31  Aligned_cols=223  Identities=13%  Similarity=0.172  Sum_probs=147.4

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      ++..|.+.|+.+.|.|-...|++|+.||++++|++......         ..........+..|..+|.+++.       
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------~~~~~epi~tfraH~gPVl~v~v-------  352 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------AEKDVEPILTFRAHEGPVLCVVV-------  352 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------cccceeeeEEEecccCceEEEEe-------
Confidence            77889999999999998899999999999999999431100         01111222245668889999987       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCC------eeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCcc
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTG------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRD  207 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~  207 (304)
                      .+++..+++|+-||+|+.|++...      .....+..+ -.+|...|+.+++++....|+ ++.||++++|+...... 
T Consensus       353 ~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~-l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-  430 (577)
T KOG0642|consen  353 PSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGT-LLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-  430 (577)
T ss_pred             cCCceEEEeeccCceeeeeccCCCCCcccccCcchhccc-eeccccceeeeeecccccceeeecCCceEEeeccCCcCc-
Confidence            779999999999999999976521      111111111 124555999999999888888 56999999999865321 


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccc-------cCCeEEEEECCCCcEE
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-------EGGVTHVQFSRDGNYL  280 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l  280 (304)
                          ..+.  .....+...++++-.....+.++...-+.--+++......+..+...       ...+..+.++|.+.+.
T Consensus       431 ----~~f~--~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~  504 (577)
T KOG0642|consen  431 ----CTFG--EPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADIT  504 (577)
T ss_pred             ----cccC--CccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCee
Confidence                1111  11122334566665422223333333333334444444433333211       1347789999999999


Q ss_pred             EEeeccCCeEEEEecccceeee
Q 022019          281 YTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       281 ~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      +++. .|+.|+++|..+++.+.
T Consensus       505 ~~~h-ed~~Ir~~dn~~~~~l~  525 (577)
T KOG0642|consen  505 FTAH-EDRSIRFFDNKTGKILH  525 (577)
T ss_pred             Eecc-cCCceecccccccccch
Confidence            9999 99999999999987653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=4.2e-14  Score=117.96  Aligned_cols=177  Identities=18%  Similarity=0.242  Sum_probs=111.8

Q ss_pred             CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCC---CCEEEEEcCC
Q 022019           81 DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATT  157 (304)
Q Consensus        81 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~  157 (304)
                      +..|.+||.+....                  .....+...+....|       +|+|+.|+.++.+   ..|++||+.+
T Consensus       183 ~~~i~i~d~dg~~~------------------~~lt~~~~~v~~p~w-------SPDG~~la~~s~~~~~~~i~i~dl~t  237 (429)
T PRK01742        183 PYEVRVADYDGFNQ------------------FIVNRSSQPLMSPAW-------SPDGSKLAYVSFENKKSQLVVHDLRS  237 (429)
T ss_pred             eEEEEEECCCCCCc------------------eEeccCCCccccceE-------cCCCCEEEEEEecCCCcEEEEEeCCC
Confidence            46899998763321                  122334456777777       8899999888654   3699999988


Q ss_pred             CeeeEEeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCC
Q 022019          158 GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT  235 (304)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  235 (304)
                      ++.........      ....++|+|||+.|+. + .+|.+.||.+.......   ..+    ..+...+....|+|++.
T Consensus       238 g~~~~l~~~~g------~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~---~~l----t~~~~~~~~~~wSpDG~  304 (429)
T PRK01742        238 GARKVVASFRG------HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP---SQL----TSGAGNNTEPSWSPDGQ  304 (429)
T ss_pred             CceEEEecCCC------ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe---Eee----ccCCCCcCCEEECCCCC
Confidence            76433222111      2346899999998884 4 67776665443222211   111    23344577899999554


Q ss_pred             cEEEEEecCCeEEEEecCCc-eEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          236 GMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       236 ~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      .+++++..+|...||++... .....+ .+..  ..+.|+|||++|+.++ .++ +.+||+.+++.
T Consensus       305 ~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~-~~~-i~~~Dl~~g~~  365 (429)
T PRK01742        305 SILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMIN-GDN-VVKQDLTSGST  365 (429)
T ss_pred             EEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEc-CCC-EEEEECCCCCe
Confidence            45555556788888876432 222223 3333  4678999999999888 655 56699988753

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=6.8e-15  Score=113.97  Aligned_cols=159  Identities=19%  Similarity=0.208  Sum_probs=111.9

Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCcccee
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~  210 (304)
                      ++++++|..+++++.||++++|++.+.........+..     .|.++.|+|||++|+ .|.| ..+||+.+++ ..+..
T Consensus       150 vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~-----eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~  222 (398)
T KOG0771|consen  150 VAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHA-----EVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALAR  222 (398)
T ss_pred             EEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcC-----ccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhh
Confidence            56688999999999999999999876655544444443     899999999999999 5777 9999999875 11111


Q ss_pred             eeeeeccccccccceeEEEeecCC---CcEEEE-EecCCeEEEEecCCceE-----eEEeccccCCeEEEEECCCCcEEE
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTH---TGMLAI-GSYSQTSAIYREDNMEL-----LYVLHGQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~~-~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~  281 (304)
                      ...     ......+..+.|+.++   ..++++ -..-+.|+.||+.....     ..+...-...|++++.+++|++++
T Consensus       223 ~t~-----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A  297 (398)
T KOG0771|consen  223 KTP-----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA  297 (398)
T ss_pred             cCC-----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence            110     2233346678888743   223333 33345677777654322     111112234799999999999999


Q ss_pred             EeeccCCeEEEEecccceeeee
Q 022019          282 TGGRKDPYILCWDLRKAVQVVY  303 (304)
Q Consensus       282 ~~~~~d~~i~vwd~~~~~~~~~  303 (304)
                      .|+ .||.|.+++..+.+.+.+
T Consensus       298 lGT-~dGsVai~~~~~lq~~~~  318 (398)
T KOG0771|consen  298 LGT-MDGSVAIYDAKSLQRLQY  318 (398)
T ss_pred             Eec-cCCcEEEEEeceeeeeEe
Confidence            999 999999999988876643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.62  E-value=6.3e-14  Score=113.13  Aligned_cols=200  Identities=16%  Similarity=0.222  Sum_probs=146.4

Q ss_pred             CCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeec------Cc-------cceeCC
Q 022019           70 PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF------PH-------MSASDP  136 (304)
Q Consensus        70 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~-------~~~~~~  136 (304)
                      |.+.|+|....||.+++|+...++...++.......              +...+..|.      |.       ....+.
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s--------------~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~   68 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLS--------------GTCTYTKWGLSADYSPMKWLSLEKAKKASL   68 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhcc--------------CcceeEEEEEEeccchHHHHhHHHHhhccC
Confidence            456799999999999999998876644433322111              122222221      10       011134


Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCccceeeeeee
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      +...++-|...|.|.+|++..++....+...   .|...|.++.++.+-..|.+ |.|..+..|+....        ...
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~---~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~--------~~~  137 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTD---KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK--------VII  137 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecC---CCCCcceeeecccccCceEecCCceeEEEEecccc--------eee
Confidence            5567888999999999999999988777643   23448999999988888884 59999999998762        111


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCC-----CcEEEEeeccCCeE
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD-----GNYLYTGGRKDPYI  290 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~~d~~i  290 (304)
                      .........+.+++.+| ++..+++++  +.|++||+++.+.+.+|.+|.++|.++.|..+     |.+++++...+.-+
T Consensus       138 ~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i  214 (541)
T KOG4547|consen  138 RIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI  214 (541)
T ss_pred             eeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence            12234455588999999 577888887  78999999999999999999999999999876     77777665467778


Q ss_pred             EEEeccc
Q 022019          291 LCWDLRK  297 (304)
Q Consensus       291 ~vwd~~~  297 (304)
                      .+|-++.
T Consensus       215 ~~w~v~~  221 (541)
T KOG4547|consen  215 TVWVVEK  221 (541)
T ss_pred             eEEEEEc
Confidence            8887765

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.61  E-value=1.2e-15  Score=119.54  Aligned_cols=188  Identities=14%  Similarity=0.183  Sum_probs=138.9

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      .|.++.|-.+.++||++- ..-+.|||-...++                   ..+.....|..+.|.|.       .-+|
T Consensus       172 tv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtEl-------------------HClk~~~~v~rLeFLPy-------HfLL  224 (545)
T KOG1272|consen  172 TVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTEL-------------------HCLKRHIRVARLEFLPY-------HFLL  224 (545)
T ss_pred             hhhhhhhhcchHHHHhhh-hceEEEecCCCcEE-------------------eehhhcCchhhhcccch-------hhee
Confidence            345555555556666554 34678887542221                   11222356667777554       3479


Q ss_pred             EEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccc
Q 022019          142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEG  220 (304)
Q Consensus       142 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  220 (304)
                      ++++..|.++.-|+.+|+.+..+.....     .+..+.-+|-+..+-.| ..|+|.+|......        ..-....
T Consensus       225 ~~~~~~G~L~Y~DVS~GklVa~~~t~~G-----~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske--------PLvKiLc  291 (545)
T KOG1272|consen  225 VAASEAGFLKYQDVSTGKLVASIRTGAG-----RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE--------PLVKILC  291 (545)
T ss_pred             eecccCCceEEEeechhhhhHHHHccCC-----ccchhhcCCccceEEEcCCCceEEecCCCCcc--------hHHHHHh
Confidence            9999999999999999999888776554     77789999988888887 99999999987632        2222356


Q ss_pred             cccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       221 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      |.++|.++++.| +|.+++|.+.|..++|||++....+.++.. ..+...+++|..|  +++.+ ....+.+|.
T Consensus       292 H~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~-~G~~v~iw~  360 (545)
T KOG1272|consen  292 HRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALS-YGDHVQIWK  360 (545)
T ss_pred             cCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeee-cCCeeeeeh
Confidence            889999999999 899999999999999999999887777765 5567889998766  33344 566789994

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=2.5e-14  Score=112.90  Aligned_cols=249  Identities=13%  Similarity=0.175  Sum_probs=153.0

Q ss_pred             ccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccc--------cccc----------cCCcc
Q 022019           49 FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC--------SLAK----------DQDSY  110 (304)
Q Consensus        49 ~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--------~~~~----------~~~~~  110 (304)
                      .+.....+.+|.+.|..+.|+..|..|++|+.|..|.+||+........+...        .+.+          ..++.
T Consensus       131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            34555678999999999999999999999999999999998765432111100        0000          00000


Q ss_pred             c-------------eEEEeecCCeEEEEeecCcc------------------------------------------ceeC
Q 022019          111 E-------------ASLVVTEGESVYDFCWFPHM------------------------------------------SASD  135 (304)
Q Consensus       111 ~-------------~~~~~~~~~~v~~~~~~~~~------------------------------------------~~~~  135 (304)
                      +             ......|..+|..++..|..                                          ++.+
T Consensus       211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence            0             11223344445554443321                                          1112


Q ss_pred             CCc-cEEEEEeCCCCEEEEEcCCCeee------EEeec-ccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCc
Q 022019          136 PTS-CVFASTTRDHPIHLWDATTGLLR------CTYRA-YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGR  206 (304)
Q Consensus       136 ~~~-~~l~~~~~dg~i~i~d~~~~~~~------~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~  206 (304)
                      |-. ..+++++.|-.+++||.+.-...      ..+.. +........|++++|+.++.-+.++ .|-.|++|.-..+..
T Consensus       291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G  370 (559)
T KOG1334|consen  291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG  370 (559)
T ss_pred             CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence            211 23445555555555554321110      11110 1111223468899999877666655 889999995443221


Q ss_pred             --c--ceee-eeeecccccccc--ceeEEEe-ecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCc
Q 022019          207 --D--FEKY-STLKGNKEGQAG--IMSAIAF-SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN  278 (304)
Q Consensus       207 --~--~~~~-~~~~~~~~~~~~--~v~~~~~-~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  278 (304)
                        +  .... .......++|..  .|..+-| -| ...++++|+.-|.|.||+-.+++.+..+.+-..-|+|+.-+|--.
T Consensus       371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~P  449 (559)
T KOG1334|consen  371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLP  449 (559)
T ss_pred             CCCCCCcchhhccchhhcccccccccceeeeccC-ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCc
Confidence              0  0000 111111344433  3666665 46 678999999999999999999999988888777999999999999


Q ss_pred             EEEEeeccCCeEEEEecccce
Q 022019          279 YLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       279 ~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      .||++| -|.-|+||-..+.+
T Consensus       450 vLAsSG-id~DVKIWTP~~~e  469 (559)
T KOG1334|consen  450 VLASSG-IDHDVKIWTPLTAE  469 (559)
T ss_pred             hhhccC-CccceeeecCCccc
Confidence            999999 99999999875443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.60  E-value=2.5e-12  Score=104.20  Aligned_cols=195  Identities=15%  Similarity=0.159  Sum_probs=125.8

Q ss_pred             EEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEE
Q 022019           75 FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWD  154 (304)
Q Consensus        75 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  154 (304)
                      +++-..+|.|.+.|..+.+....+.                  .+..+..      ...++|||+++++++.||.|.++|
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~------------------~~~~~h~------~~~~s~Dgr~~yv~~rdg~vsviD   64 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIP------------------TGGAPHA------GLKFSPDGRYLYVANRDGTVSVID   64 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-------------------STTEEE------EEE-TT-SSEEEEEETTSEEEEEE
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEc------------------CCCCcee------EEEecCCCCEEEEEcCCCeEEEEE
Confidence            3455678999999988654432211                  1122211      123488999999999999999999


Q ss_pred             cCCCeeeEEeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeec
Q 022019          155 ATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP  232 (304)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  232 (304)
                      +.+++.+.++....      ...++++++||++++++  ..+.+.++|.++. +..+.+.............+.++..+|
T Consensus        65 ~~~~~~v~~i~~G~------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~  137 (369)
T PF02239_consen   65 LATGKVVATIKVGG------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASP  137 (369)
T ss_dssp             TTSSSEEEEEE-SS------EEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-S
T ss_pred             CCcccEEEEEecCC------CcceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccccccCCCceeEEecC
Confidence            99999988887654      56789999999999955  7899999999773 222222211111112345577888888


Q ss_pred             CCCcEEEEEecCCeEEEEecCCceEe--EEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          233 THTGMLAIGSYSQTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       233 ~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      ....++++--+.+.|.+.|....+.+  ..+. .........|+|++++++.+...++.|-++|..+++.+
T Consensus       138 ~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v  207 (369)
T PF02239_consen  138 GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV  207 (369)
T ss_dssp             SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccccCcccceeeecccccceeEEEeeccceEE
Confidence            44445555555688999998765433  2333 34567889999999998877657889999999988765

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.58  E-value=1.8e-13  Score=103.21  Aligned_cols=186  Identities=18%  Similarity=0.269  Sum_probs=123.7

Q ss_pred             EEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE-EEE
Q 022019           66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-AST  144 (304)
Q Consensus        66 i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~  144 (304)
                      .+|||+|+++|+++.- .+.|=|..+-+...-....                  ..|.-+.|       ..+..++ ...
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl------------------dki~yieW-------~ads~~ilC~~   67 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL------------------DKIVYIEW-------KADSCHILCVA   67 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH------------------HHhhheee-------eccceeeeeee
Confidence            6899999999998865 7777777655432211111                  34555566       3355454 445


Q ss_pred             eCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeeeeeccccccc
Q 022019          145 TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA  222 (304)
Q Consensus       145 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  222 (304)
                      ..|+.|.+|++...+....+.....     ++.++.|+|||+.|. ++ .+-.|.+|.+.+...     .-+    .-..
T Consensus        68 yk~~~vqvwsl~Qpew~ckIdeg~a-----gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-----~~~----~~pK  133 (447)
T KOG4497|consen   68 YKDPKVQVWSLVQPEWYCKIDEGQA-----GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-----YLL----PHPK  133 (447)
T ss_pred             eccceEEEEEeecceeEEEeccCCC-----cceeeeECCCcceEeeeecceeEEEEEEecccee-----EEe----cccc
Confidence            6788999999998887777766554     888999999998888 55 899999999987321     111    1112


Q ss_pred             cceeEEEeecCCCcEEEEEecCC------------------------------------eEEEEecCCceEeEEeccccC
Q 022019          223 GIMSAIAFSPTHTGMLAIGSYSQ------------------------------------TSAIYREDNMELLYVLHGQEG  266 (304)
Q Consensus       223 ~~v~~~~~~p~~~~~l~~~~~dg------------------------------------~i~i~d~~~~~~~~~~~~~~~  266 (304)
                      ..+..++|+| ++++.+.++.-.                                    .+.+||.--...+..+. -.-
T Consensus       134 ~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~l  211 (447)
T KOG4497|consen  134 TNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGL  211 (447)
T ss_pred             cCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-ecc
Confidence            2357788888 666666665321                                    23334321111122221 124


Q ss_pred             CeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          267 GVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       267 ~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      ++..++|+|.+++|+.|+ .|+.+++.+
T Consensus       212 G~k~v~wsP~~qflavGs-yD~~lrvln  238 (447)
T KOG4497|consen  212 GLKFVEWSPCNQFLAVGS-YDQMLRVLN  238 (447)
T ss_pred             ceeEEEeccccceEEeec-cchhhhhhc
Confidence            688999999999999999 999998765

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.56  E-value=3.6e-13  Score=115.43  Aligned_cols=199  Identities=16%  Similarity=0.186  Sum_probs=147.4

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      .|..-.+.-+...++.++.++.+.+||........+......                ...++.    ....++++.-++
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er----------------~~l~~~----~~~g~s~~~~~i  148 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER----------------CTLYSS----LIIGDSAEELYI  148 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCce----------------EEEEeE----EEEeccCcEEEE
Confidence            344444445566788888888999999886654433322210                011111    112336677789


Q ss_pred             EEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCccceeeeeeeccccc
Q 022019          142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEG  220 (304)
Q Consensus       142 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  220 (304)
                      ++|+.-+.|.+|+....+....+..|     .+.+.++.|+.+|++++ ++.|.++++|++.+.+...       ....+
T Consensus       149 ~~gsv~~~iivW~~~~dn~p~~l~GH-----eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------~~~fg  216 (967)
T KOG0974|consen  149 ASGSVFGEIIVWKPHEDNKPIRLKGH-----EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------CTGFG  216 (967)
T ss_pred             EeccccccEEEEeccccCCcceeccc-----CCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------ccccc
Confidence            99999999999998743333334444     44999999999999999 5799999999998743221       33478


Q ss_pred             cccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC-CeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG-GVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       221 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      |...+..++|.| +  .+++++.|-+.++|+. +++.+..+.+|.. .+..++..++...++|++ .|+.+++|++..
T Consensus       217 HsaRvw~~~~~~-n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g-~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  217 HSARVWACCFLP-N--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG-NDSTLKLWDLNG  289 (967)
T ss_pred             ccceeEEEEecc-c--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeec-cCcchhhhhhhc
Confidence            999999999999 4  8999999999999975 4555568888865 699999999999999999 999999999865

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.56  E-value=1.8e-11  Score=97.25  Aligned_cols=216  Identities=12%  Similarity=0.134  Sum_probs=135.4

Q ss_pred             EcCCCCeEEEecC----------CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           68 WSPDGSSFLTSSE----------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        68 ~s~~~~~l~s~~~----------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      ++|||+.|+.+..          +..|.+||..+.+...++....                 .+-....-.|...+++||
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~-----------------~p~~~~~~~~~~~~ls~d  115 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE-----------------GPRFLVGTYPWMTSLTPD  115 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC-----------------CchhhccCccceEEECCC
Confidence            9999998777654          7899999999876654433211                 000001112233456888


Q ss_pred             ccEEEEEe-C-CCCEEEEEcCCCeeeEEeecccccc-------------------c-------ccceEEE----------
Q 022019          138 SCVFASTT-R-DHPIHLWDATTGLLRCTYRAYDAVD-------------------E-------ITAAFSV----------  179 (304)
Q Consensus       138 ~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~~-------------------~-------~~~v~~i----------  179 (304)
                      |+++++.. . +..|.+.|+.+++.+..+.......                   .       ...+...          
T Consensus       116 gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v  195 (352)
T TIGR02658       116 NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYL  195 (352)
T ss_pred             CCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcccc
Confidence            88877665 3 5778888888776665544322100                   0       0001111          


Q ss_pred             ----EECC-CCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccc----cccccceeEEEeecCCCcEEEEEe--------
Q 022019          180 ----AFNP-TGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK----EGQAGIMSAIAFSPTHTGMLAIGS--------  242 (304)
Q Consensus       180 ----~~~~-~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~--------  242 (304)
                          .|.+ +|+.++++..|.|++.|+.................    .-..+.+.-++++|+++++++...        
T Consensus       196 ~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk  275 (352)
T TIGR02658       196 INHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHK  275 (352)
T ss_pred             ccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccccc
Confidence                1233 78888888669999999765332221111111000    012233455999995555444332        


Q ss_pred             -cCCeEEEEecCCceEeEEeccccCCeEEEEECCCCc-EEEEeeccCCeEEEEecccceee
Q 022019          243 -YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       243 -~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                       ..+.|.++|..+++.+..+.. ...+..++++|||+ +|++....++.|.++|+.+++.+
T Consensus       276 ~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i  335 (352)
T TIGR02658       276 TASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL  335 (352)
T ss_pred             CCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence             124799999999999999874 45789999999999 88877756889999999998765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=2.6e-12  Score=106.70  Aligned_cols=205  Identities=14%  Similarity=0.090  Sum_probs=115.4

Q ss_pred             CCCCceeEEEEcCCCCe--E-EEecCCC--eEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           58 IPNNFLKGIKWSPDGSS--F-LTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~--l-~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      .....+..-+|+|||+.  + ++...+|  .|.+.++.++...                  ............       
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~------------------~lt~~~g~~~~p-------  236 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK------------------KILALQGNQLMP-------  236 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce------------------EeecCCCCccce-------
Confidence            34556678899999975  2 2444444  4666676644221                  000011122223       


Q ss_pred             eeCCCccEEEEEeC-CC----CEEEEEcCCC---eeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEE--
Q 022019          133 ASDPTSCVFASTTR-DH----PIHLWDATTG---LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFD--  200 (304)
Q Consensus       133 ~~~~~~~~l~~~~~-dg----~i~i~d~~~~---~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d--  200 (304)
                      +++|||+.|+..+. +|    .+.+|++..+   ...........     ......|+|||+.|+ ++ .+|...+|.  
T Consensus       237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~-----~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFG-----TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCC-----CcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence            45899988877653 23    3344676653   22222221111     335689999999888 55 566555554  


Q ss_pred             cCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC--CeEEEEecCCceEeEEeccccCCeEEEEECCCCc
Q 022019          201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS--QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN  278 (304)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  278 (304)
                      +...+...   ..+    ......+....|+|++..+++++..+  ..|.+||+.+++... +......+....|+|||+
T Consensus       312 ~~~~g~~~---~~l----t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~  383 (428)
T PRK01029        312 IDPEGQSP---RLL----TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSL  383 (428)
T ss_pred             Ccccccce---EEe----ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCC
Confidence            43211111   111    11223456789999544444444433  369999998876543 333344567899999999


Q ss_pred             EEEEeecc--CCeEEEEeccccee
Q 022019          279 YLYTGGRK--DPYILCWDLRKAVQ  300 (304)
Q Consensus       279 ~l~~~~~~--d~~i~vwd~~~~~~  300 (304)
                      +|+..+..  ...|.++|+..++.
T Consensus       384 ~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        384 HLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             EEEEEECCCCCceEEEEECCCCCE
Confidence            88755412  35788899877643

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.55  E-value=8e-14  Score=101.88  Aligned_cols=171  Identities=15%  Similarity=0.152  Sum_probs=115.3

Q ss_pred             CCCCceeEEEEcC-CCC--eEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           58 IPNNFLKGIKWSP-DGS--SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        58 ~h~~~V~~i~~s~-~~~--~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      +..+.|.|..+.. +++  +|+.|-.+|.+.+||+.++.....+..       ......-...|..+|.++.|.+     
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~-------~~kv~~~~ash~qpvlsldyas-----  215 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ-------SSKVESPNASHKQPVLSLDYAS-----  215 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc-------ccccccchhhccCcceeeeech-----
Confidence            4466788888654 444  455667799999999997643222211       1122223445678888888843     


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCccceeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                        .-..=++|+.+..+..|++........+.......+ ..|..+.+-||++.+| +|-|+.|+||..++.        .
T Consensus       216 --~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl--------~  284 (323)
T KOG0322|consen  216 --SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRTL--------N  284 (323)
T ss_pred             --hhcCCcCCCccccceeeeeccccCcccccceEEecC-CCccceEEccCCcEEeecccCCcEEEEEeccC--------C
Confidence              222345667777788888864321111111111111 1678899999999999 569999999999873        2


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEec
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~  252 (304)
                      ......-|.+.|.+++|+| +..++|+++.|+.|.+|++
T Consensus       285 pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  285 PLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL  322 (323)
T ss_pred             chhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence            2333366888999999999 6779999999999999986

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.55  E-value=1.1e-13  Score=103.71  Aligned_cols=235  Identities=14%  Similarity=0.243  Sum_probs=153.0

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCC-CccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG-ISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      ..+.|+++.|...|.||++|...|.|.+|.-.... +.+.+... +........-.-...-...|..+.|...     ..
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~te-FQshe~EFDYLkSleieEKin~I~w~~~-----t~   98 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTE-FQSHELEFDYLKSLEIEEKINAIEWFDD-----TG   98 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhh-hcccccchhhhhhccHHHHhhheeeecC-----CC
Confidence            45679999999999999999999999999765332 11110000 0000000000011112245667777432     12


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeE---------------------------Eeecc-----------cccccccceEEE
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRC---------------------------TYRAY-----------DAVDEITAAFSV  179 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~---------------------------~~~~~-----------~~~~~~~~v~~i  179 (304)
                      ...++..+.|++|++|.+.......                           .+..+           ....|...+.++
T Consensus        99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi  178 (460)
T COG5170          99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI  178 (460)
T ss_pred             cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence            3467777789999999886431100                           00000           011344568899


Q ss_pred             EECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE--
Q 022019          180 AFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL--  257 (304)
Q Consensus       180 ~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--  257 (304)
                      .|+.|...++++.|=.|.+|++......+................|++..|+|....++.-.+..|.|++-|++...+  
T Consensus       179 S~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd  258 (460)
T COG5170         179 SFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD  258 (460)
T ss_pred             eecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence            999999999999999999999987766655544433333444556899999997778888899999999999984321  


Q ss_pred             ----eEE----------eccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          258 ----LYV----------LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       258 ----~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                          +..          +.+-...|..+.|+++|+++++-.  =-++++||++..+..
T Consensus       259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd--yltvkiwDvnm~k~p  314 (460)
T COG5170         259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD--YLTVKIWDVNMAKNP  314 (460)
T ss_pred             CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec--cceEEEEecccccCC
Confidence                111          112234688899999999999765  568999999876543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=3.9e-12  Score=106.68  Aligned_cols=201  Identities=13%  Similarity=0.090  Sum_probs=119.9

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCC---CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      .+..+...+...+|+|||+.|+..+.+   ..|.+||+.++....                 + ...........     
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-----------------l-~~~~g~~~~~~-----  249 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-----------------I-TNFEGLNGAPA-----  249 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-----------------c-cCCCCCcCCeE-----
Confidence            344567789999999999998876543   368888987653210                 0 00011122334     


Q ss_pred             ceeCCCccEEEE-EeCCC--CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCC--eEEEEEcCCC
Q 022019          132 SASDPTSCVFAS-TTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRP  204 (304)
Q Consensus       132 ~~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~--~i~v~d~~~~  204 (304)
                        |+|+|+.|+. .+.+|  .|+++|+.+++... +.....     ......|+|+|+.|+ ++ .++  .|+++|+..+
T Consensus       250 --~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~-----~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g  321 (430)
T PRK00178        250 --WSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPA-----IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG  321 (430)
T ss_pred             --ECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCC-----CcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence              4889987764 44455  58888998876543 322221     345678999999887 44 343  5677776543


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEe-cCC--eEEEEecCCceEeEEeccccCCeEEEEECCCCcEEE
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQ--TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  281 (304)
                      .  ...   +..  .+  .......|+|++ ..++..+ .++  .|.++|+.+++.. .+.. ........|+|||++|+
T Consensus       322 ~--~~~---lt~--~~--~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~  389 (430)
T PRK00178        322 R--AER---VTF--VG--NYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLI  389 (430)
T ss_pred             C--EEE---eec--CC--CCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEE
Confidence            2  111   111  11  123457899954 4555444 344  4888998877543 3331 22233568999999998


Q ss_pred             EeeccCC--eEEEEecccc
Q 022019          282 TGGRKDP--YILCWDLRKA  298 (304)
Q Consensus       282 ~~~~~d~--~i~vwd~~~~  298 (304)
                      .++..++  .|.++++..+
T Consensus       390 ~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        390 YATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             EEEecCCceEEEEEECCCC
Confidence            7763333  4667777543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.54  E-value=3.2e-11  Score=97.83  Aligned_cols=214  Identities=16%  Similarity=0.182  Sum_probs=125.2

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+......-..+.|+|||+++++++.||.|.++|+.+.+....+                  ..+.....+       ++
T Consensus        31 ~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i------------------~~G~~~~~i-------~~   85 (369)
T PF02239_consen   31 RIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI------------------KVGGNPRGI-------AV   85 (369)
T ss_dssp             EEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE------------------E-SSEEEEE-------EE
T ss_pred             EEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE------------------ecCCCcceE-------EE
Confidence            44433333455789999999999999999999999876543221                  222333334       55


Q ss_pred             CCCccEEEEEe-CCCCEEEEEcCCCeeeEEeecccccc--cccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCccce
Q 022019          135 DPTSCVFASTT-RDHPIHLWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       135 ~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~  209 (304)
                      ++||++++++. ..+.+.++|.++.+.+..+.......  ....+.++..+|....++..  ..+.|.+.|.......  
T Consensus        86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~--  163 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL--  163 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE--
T ss_pred             cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc--
Confidence            89999988775 68899999999999888876543211  23367788888888866644  4588888887654211  


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEe----------------------------
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL----------------------------  261 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------------------------  261 (304)
                      ....+     ..........|+|++..++++...++.|-++|.++++.+..+                            
T Consensus       164 ~~~~i-----~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~  238 (369)
T PF02239_consen  164 KVTTI-----KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGL  238 (369)
T ss_dssp             EEEEE-----E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBS
T ss_pred             ceeee-----cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccc
Confidence            11111     122335678999944444454556677888887766443321                            


Q ss_pred             ---------------------------ccccCCeEEEEECCCCcEEEEe---eccCCeEEEEecccceee
Q 022019          262 ---------------------------HGQEGGVTHVQFSRDGNYLYTG---GRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       262 ---------------------------~~~~~~v~~~~~~~~~~~l~~~---~~~d~~i~vwd~~~~~~~  301 (304)
                                                 ....++ .-+.-+|++++|++.   +...+.|.++|.++.+.+
T Consensus       239 ~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~  307 (369)
T PF02239_consen  239 GYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV  307 (369)
T ss_dssp             SSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE
T ss_pred             cceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCccee
Confidence                                       111122 446668999999988   425689999999987544

...

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=3.6e-12  Score=106.36  Aligned_cols=161  Identities=19%  Similarity=0.217  Sum_probs=99.4

Q ss_pred             cCCeEEEEeecCccceeCCCccEEEEEeCC---CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-c
Q 022019          118 EGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-Y  192 (304)
Q Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~  192 (304)
                      +...+...+|       +|+|+.|+..+.+   ..|++||+.+++.........      ......|+|||+.|+ +. .
T Consensus       194 ~~~~v~~p~w-------SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g------~~~~~~~SPDG~~la~~~~~  260 (427)
T PRK02889        194 SPEPIISPAW-------SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG------SNSAPAWSPDGRTLAVALSR  260 (427)
T ss_pred             CCCCcccceE-------cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC------CccceEECCCCCEEEEEEcc
Confidence            3355666666       8899988887643   359999999887543322211      445789999999887 44 6


Q ss_pred             CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEec--CCceEeEEeccccCCeEE
Q 022019          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE--DNMELLYVLHGQEGGVTH  270 (304)
Q Consensus       193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~  270 (304)
                      ++...||.+...+....   .+    ..+........|+|++..+++++..+|...||.+  ..+... .+..+......
T Consensus       261 ~g~~~Iy~~d~~~~~~~---~l----t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~  332 (427)
T PRK02889        261 DGNSQIYTVNADGSGLR---RL----TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTS  332 (427)
T ss_pred             CCCceEEEEECCCCCcE---EC----CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCc
Confidence            77766666543222211   11    2223345678899954444444444566666644  444322 22222333456


Q ss_pred             EEECCCCcEEEEeeccCC---eEEEEeccccee
Q 022019          271 VQFSRDGNYLYTGGRKDP---YILCWDLRKAVQ  300 (304)
Q Consensus       271 ~~~~~~~~~l~~~~~~d~---~i~vwd~~~~~~  300 (304)
                      ..|+|||++|+..+ .++   .|.+||+.+++.
T Consensus       333 ~~~SpDG~~Ia~~s-~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        333 PRISPDGKLLAYIS-RVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             eEECCCCCEEEEEE-ccCCcEEEEEEECCCCCe
Confidence            89999999998777 443   699999987653

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.54  E-value=5.5e-12  Score=105.60  Aligned_cols=199  Identities=16%  Similarity=0.153  Sum_probs=122.7

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCC---CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      .+..+...+...+|+|||++|+.++.+   ..|.+||+.++...                  ........+...+|    
T Consensus       184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~------------------~~~~~~~~~~~~~~----  241 (417)
T TIGR02800       184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE------------------KVASFPGMNGAPAF----  241 (417)
T ss_pred             EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE------------------EeecCCCCccceEE----
Confidence            444567779999999999999877643   47999998765321                  11111123333444    


Q ss_pred             ceeCCCccEEEE-EeCCC--CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCC--eEEEEEcCCC
Q 022019          132 SASDPTSCVFAS-TTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRP  204 (304)
Q Consensus       132 ~~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~--~i~v~d~~~~  204 (304)
                         +|+|+.|+. .+.++  .|++||+.++.... +..+..     ......|+|+|+.|+ ++ .++  .|+++|+...
T Consensus       242 ---spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~-----~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~  312 (417)
T TIGR02800       242 ---SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPG-----IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG  312 (417)
T ss_pred             ---CCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCC-----CCCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence               888887664 44444  58999988775433 222221     334678999999887 44 333  5777777642


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC---eEEEEecCCceEeEEeccccCCeEEEEECCCCcEEE
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  281 (304)
                      .  .   ..+    ..+......+.|+| ++.+++.++.++   .|.+||+.++... .+... .......|+|+|++|+
T Consensus       313 ~--~---~~l----~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~  380 (417)
T TIGR02800       313 E--V---RRL----TFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMIL  380 (417)
T ss_pred             C--E---EEe----ecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEE
Confidence            1  1   111    11223456789999 566676666665   7889998775432 33322 2345678999999998


Q ss_pred             EeeccCC--eEEEEecc
Q 022019          282 TGGRKDP--YILCWDLR  296 (304)
Q Consensus       282 ~~~~~d~--~i~vwd~~  296 (304)
                      .++..++  .+.+.+..
T Consensus       381 ~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       381 YATTRGGRGVLGLVSTD  397 (417)
T ss_pred             EEEeCCCcEEEEEEECC
Confidence            8873332  45555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=5e-12  Score=105.85  Aligned_cols=199  Identities=13%  Similarity=0.089  Sum_probs=115.4

Q ss_pred             ecCCCCceeEEEEcCCCCeEEEecC-CC--eEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           56 SSIPNNFLKGIKWSPDGSSFLTSSE-DK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      +..+...+.+..|+|||+.|+..+. ++  .|.+||+.+++...                 + ..........       
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-----------------l-t~~~g~~~~~-------  267 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-----------------V-TSFPGINGAP-------  267 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-----------------e-cCCCCCcCCe-------
Confidence            3445667889999999998887654 23  57888887543210                 0 0000111223       


Q ss_pred             eeCCCccEEEE-EeCCCC--EEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCC--eEEEEEcCCCC
Q 022019          133 ASDPTSCVFAS-TTRDHP--IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRPG  205 (304)
Q Consensus       133 ~~~~~~~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~--~i~v~d~~~~~  205 (304)
                      +++|+|+.|+. .+.+|.  |+++|+.+++... +..+..     ......|+|||+.|+ ++ .++  .|+++|+..+.
T Consensus       268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~-----~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~  341 (448)
T PRK04792        268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHRA-----IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK  341 (448)
T ss_pred             eECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCCC-----CccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            44889987765 455664  7888888776543 222221     446789999999888 44 344  46666665421


Q ss_pred             ccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC--eEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEe
Q 022019          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG  283 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  283 (304)
                        ..   .+.  ..+  ......+|+|++..++++...++  .|.++|+.+++.. .+... .......|+|||++|+..
T Consensus       342 --~~---~Lt--~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~  410 (448)
T PRK04792        342 --VS---RLT--FEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYS  410 (448)
T ss_pred             --EE---EEe--cCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEE
Confidence              11   111  111  11335689995554444444445  3566787776543 33322 122356899999998776


Q ss_pred             eccCCe--EEEEecc
Q 022019          284 GRKDPY--ILCWDLR  296 (304)
Q Consensus       284 ~~~d~~--i~vwd~~  296 (304)
                      ...++.  +.+++..
T Consensus       411 ~~~~g~~~l~~~~~~  425 (448)
T PRK04792        411 TTYQGKQVLAAVSID  425 (448)
T ss_pred             EecCCceEEEEEECC
Confidence            634443  6677764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.53  E-value=5.6e-12  Score=96.55  Aligned_cols=148  Identities=14%  Similarity=0.217  Sum_probs=110.2

Q ss_pred             EEEEEeCC--CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeecc
Q 022019          140 VFASTTRD--HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN  217 (304)
Q Consensus       140 ~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  217 (304)
                      ++|..+.+  +.+++++++.+..++.+....      .|.++.++.  +.|++.-...|+|||++..    +.+.++...
T Consensus        58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt------~IL~VrmNr--~RLvV~Lee~IyIydI~~M----klLhTI~t~  125 (391)
T KOG2110|consen   58 LVAIVSIKQPRKLKVVHFKKKTTICEIFFPT------SILAVRMNR--KRLVVCLEESIYIYDIKDM----KLLHTIETT  125 (391)
T ss_pred             eeEEEecCCCceEEEEEcccCceEEEEecCC------ceEEEEEcc--ceEEEEEcccEEEEecccc----eeehhhhcc
Confidence            55555544  459999999988888887766      888999875  4677665556999999863    222222221


Q ss_pred             ccccccceeEEEeecCCCcEEEEEe--cCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCC-eEEEEe
Q 022019          218 KEGQAGIMSAIAFSPTHTGMLAIGS--YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP-YILCWD  294 (304)
Q Consensus       218 ~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~-~i~vwd  294 (304)
                       ..+...+.++.+++ .+.+++.-+  ..|.|.|||..+.+++..+..|++.+.+++|+++|.+|||++ +.| .|||+.
T Consensus       126 -~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATAS-eKGTVIRVf~  202 (391)
T KOG2110|consen  126 -PPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATAS-EKGTVIRVFS  202 (391)
T ss_pred             -CCCccceEeeccCC-CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEec-cCceEEEEEE
Confidence             22334455666666 444666532  368999999999999999999999999999999999999999 666 589999


Q ss_pred             cccceeee
Q 022019          295 LRKAVQVV  302 (304)
Q Consensus       295 ~~~~~~~~  302 (304)
                      +.+|+++.
T Consensus       203 v~~G~kl~  210 (391)
T KOG2110|consen  203 VPEGQKLY  210 (391)
T ss_pred             cCCccEee
Confidence            99997764

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=7e-13  Score=102.09  Aligned_cols=189  Identities=18%  Similarity=0.253  Sum_probs=133.2

Q ss_pred             CceeEEEEcCCCC-eEEEecCC--CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           61 NFLKGIKWSPDGS-SFLTSSED--KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        61 ~~V~~i~~s~~~~-~l~s~~~d--g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      ..+..|.-++... .+|+|+..  ..+.+||+...+..........  +      .+.+.-.--++++.|.+.    + .
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn--D------~L~LrVPvW~tdi~Fl~g----~-~  215 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPN--D------RLGLRVPVWITDIRFLEG----S-P  215 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCC--c------cccceeeeeeccceecCC----C-C
Confidence            3466666666444 56668888  8899999987644333322211  0      011111122334444332    1 1


Q ss_pred             ccEEEEEeCCCCEEEEEcCCC-eeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeee
Q 022019          138 SCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      ...|++++.-+.+++||.+.+ +++..+.....     +++++...|+++++++| ..+.+..||++..       ..+.
T Consensus       216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~-----~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~-------kl~g  283 (412)
T KOG3881|consen  216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN-----PISSTGLTPSGNFIYTGNTKGQLAKFDLRGG-------KLLG  283 (412)
T ss_pred             CceEEEEecceeEEEecCcccCcceeEeccccC-----cceeeeecCCCcEEEEecccchhheecccCc-------eeec
Confidence            678999999999999999865 35566665544     89999999999999988 8999999999974       2233


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCC
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD  276 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  276 (304)
                      ..+.+..+.++++..+| ...++++++-|..+||+|+++.+++.... -...++++.+.++
T Consensus       284 ~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  284 CGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             cccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence            33577788899999999 78899999999999999999977766554 2455677777654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=7.3e-13  Score=106.89  Aligned_cols=153  Identities=14%  Similarity=0.201  Sum_probs=116.3

Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccc------cccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCc
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA------VDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGR  206 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~  206 (304)
                      +++...+|++|+.+|.|-.||.+......++.....      ......|+++.|+.+|-.+++| .+|.|.|||++... 
T Consensus       183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~-  261 (703)
T KOG2321|consen  183 INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK-  261 (703)
T ss_pred             ecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-
Confidence            366778999999999999999998766655544332      1223359999999999999988 99999999999852 


Q ss_pred             cceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeecc
Q 022019          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK  286 (304)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  286 (304)
                            .+.....+...+|..+.|.+.+..--++......++|||-.++++...+.. ...+..+++-|++.+++++. .
T Consensus       262 ------pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~An-e  333 (703)
T KOG2321|consen  262 ------PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTAN-E  333 (703)
T ss_pred             ------ceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEec-C
Confidence                  222222445667999999885444444445557799999999999988874 55699999999999999998 7


Q ss_pred             CCeEEEEec
Q 022019          287 DPYILCWDL  295 (304)
Q Consensus       287 d~~i~vwd~  295 (304)
                      ++.+..|=+
T Consensus       334 ~~~m~~yyi  342 (703)
T KOG2321|consen  334 SSKMHTYYI  342 (703)
T ss_pred             CCcceeEEc
Confidence            777766644

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.52  E-value=6.8e-12  Score=93.34  Aligned_cols=198  Identities=17%  Similarity=0.192  Sum_probs=136.3

Q ss_pred             CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc-EEEEEeCCCCEEEEEcCCC
Q 022019           80 EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTG  158 (304)
Q Consensus        80 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~  158 (304)
                      ..|.+.+|++.+.+...              ...+.......+..+.|.....    +|. .++-+..+|.|.++.....
T Consensus        44 R~Gkl~Lys~~d~~~~~--------------l~~~q~~dts~~~dm~w~~~~~----~g~~~l~~a~a~G~i~~~r~~~~  105 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSP--------------LDTLQCTDTSTEFDMLWRIRET----DGDFNLLDAHARGQIQLYRNDED  105 (339)
T ss_pred             eccceEEEeecccccCc--------------cceeeeecccccceeeeeeccC----CccceeeeccccceEEEEeeccc
Confidence            34678888887655432              1112233345677788865432    233 5677778899999987765


Q ss_pred             eeeEEeecccccccc-cceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCc
Q 022019          159 LLRCTYRAYDAVDEI-TAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG  236 (304)
Q Consensus       159 ~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  236 (304)
                      .....+.......-. ....++.|++.+..++++ .+|.+.+-+...  ...+.    ....+.|........|+-....
T Consensus       106 ~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~--~~le~----vq~wk~He~E~Wta~f~~~~pn  179 (339)
T KOG0280|consen  106 ESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETE--MVLEK----VQTWKVHEFEAWTAKFSDKEPN  179 (339)
T ss_pred             eeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecce--eeeee----cccccccceeeeeeecccCCCc
Confidence            555555544432211 125688999999999988 888888555432  11111    1233678888888999987788


Q ss_pred             EEEEEecCCeEEEEecC-CceEeEE-eccccCCeEEEEECC-CCcEEEEeeccCCeEEEEecccceeee
Q 022019          237 MLAIGSYSQTSAIYRED-NMELLYV-LHGQEGGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       237 ~l~~~~~dg~i~i~d~~-~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      ++.+|++|+.+..||++ .++.+.. .+.|...|.++.-+| .+.+|++|+ .|..|++||.++-.+.+
T Consensus       180 lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs-YDe~i~~~DtRnm~kPl  247 (339)
T KOG0280|consen  180 LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS-YDECIRVLDTRNMGKPL  247 (339)
T ss_pred             eEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec-cccceeeeehhcccCcc
Confidence            99999999999999999 3444443 457888999999876 577899999 99999999999644443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.51  E-value=9.7e-11  Score=89.94  Aligned_cols=220  Identities=17%  Similarity=0.204  Sum_probs=144.0

Q ss_pred             eEEEEcCCCCeEEEecC-CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEE
Q 022019           64 KGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (304)
Q Consensus        64 ~~i~~s~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (304)
                      +.++++++|++++++.+ -|.|.++-+.+..............+           .+.....-.-+++...++|++++++
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g-----------~~p~~rQ~~~h~H~a~~tP~~~~l~  160 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTG-----------SGPHERQESPHVHSANFTPDGRYLV  160 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCC-----------CCCCccccCCccceeeeCCCCCEEE
Confidence            88999999999999876 58999999875433222111100000           0000122222345556799999998


Q ss_pred             EEeC-CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeeeeecccc
Q 022019          143 STTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (304)
Q Consensus       143 ~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~  219 (304)
                      +..- --.|.+|++..|.....-...-  ........|.|+|++++.+ +. -+++|.+|........+..++.+.....
T Consensus       161 v~DLG~Dri~~y~~~dg~L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~  238 (346)
T COG2706         161 VPDLGTDRIFLYDLDDGKLTPADPAEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE  238 (346)
T ss_pred             EeecCCceEEEEEcccCcccccccccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence            8853 2359999999876543322211  2223667899999999999 56 8999999999876566666665544333


Q ss_pred             cc--ccceeEEEeecCCCcEEEEEec-CCeEEEEecCC--ce--EeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          220 GQ--AGIMSAIAFSPTHTGMLAIGSY-SQTSAIYREDN--ME--LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       220 ~~--~~~v~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                      ..  .....++..+| ++++|.++.. ...|.+|.+..  ++  .+.....+...-+...|+|.|++|++++.++..|.+
T Consensus       239 dF~g~~~~aaIhis~-dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~v  317 (346)
T COG2706         239 DFTGTNWAAAIHISP-DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITV  317 (346)
T ss_pred             ccCCCCceeEEEECC-CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEE
Confidence            22  23466788999 6666665543 45788887754  32  222333445556899999999999999977778999


Q ss_pred             Eeccc
Q 022019          293 WDLRK  297 (304)
Q Consensus       293 wd~~~  297 (304)
                      |....
T Consensus       318 f~~d~  322 (346)
T COG2706         318 FERDK  322 (346)
T ss_pred             EEEcC
Confidence            97754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=9.5e-14  Score=111.42  Aligned_cols=172  Identities=20%  Similarity=0.259  Sum_probs=124.4

Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC--CcEEEEE
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG  191 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~  191 (304)
                      .+.+|.+.|.++.|       +.+|.+|++|++|-.+.|||....+++..+..    +|...|.++.|-|.  ++.+++|
T Consensus        45 eL~GH~GCVN~LeW-------n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T----gHtaNIFsvKFvP~tnnriv~sg  113 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEW-------NADGELLASGSDDTRLIVWDPFEYKLLHSIST----GHTANIFSVKFVPYTNNRIVLSG  113 (758)
T ss_pred             hhccccceecceee-------cCCCCEEeecCCcceEEeecchhcceeeeeec----ccccceeEEeeeccCCCeEEEec
Confidence            34567788999999       77999999999999999999987777766643    45558999999993  4555566


Q ss_pred             -cCCeEEEEEcCCCCcccee--eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE-------eEEe
Q 022019          192 -YNKSVRVFDVHRPGRDFEK--YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-------LYVL  261 (304)
Q Consensus       192 -~d~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~  261 (304)
                       .|..|++||+.........  ......-...|...|..++-.|.+...+.++++||+|+-||++....       ...+
T Consensus       114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l  193 (758)
T KOG1310|consen  114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL  193 (758)
T ss_pred             cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence             9999999999852211100  01111112456777888999997779999999999999999986321       1111


Q ss_pred             ---ccccCCeEEEEECCCCc-EEEEeeccCCeEEEEeccc
Q 022019          262 ---HGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       262 ---~~~~~~v~~~~~~~~~~-~l~~~~~~d~~i~vwd~~~  297 (304)
                         ...--...++..+|... +|+.|+ .|-..++||.+.
T Consensus       194 ~ny~~~lielk~ltisp~rp~~laVGg-sdpfarLYD~Rr  232 (758)
T KOG1310|consen  194 VNYNPQLIELKCLTISPSRPYYLAVGG-SDPFARLYDRRR  232 (758)
T ss_pred             HHhchhhheeeeeeecCCCCceEEecC-CCchhhhhhhhh
Confidence               11123578899999765 577777 999999999654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.50  E-value=1.2e-12  Score=99.37  Aligned_cols=237  Identities=15%  Similarity=0.195  Sum_probs=141.9

Q ss_pred             CCceeEEEEcCCCC--eEEEecCCCeEEEeeCCCCCCccccccccc--cccCCccc-eEEEeecCC-------eE--EEE
Q 022019           60 NNFLKGIKWSPDGS--SFLTSSEDKTLRIFSLPENGISYDVNACSL--AKDQDSYE-ASLVVTEGE-------SV--YDF  125 (304)
Q Consensus        60 ~~~V~~i~~s~~~~--~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~-------~v--~~~  125 (304)
                      ...|..|.|.+++.  .++..+.|.+|++|.+..............  ........ ......+..       .+  ...
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            45688999998654  677788999999999876544321110000  00000000 000011110       01  112


Q ss_pred             eecCccceeCCCccEEEEEeCCCCEEEEEcCCCee---eEEeecccccccccceEEEEECCCC-cEEE-EEcCCeEEEEE
Q 022019          126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNPTG-TKIF-AGYNKSVRVFD  200 (304)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~-~~~d~~i~v~d  200 (304)
                      .++...++++.|+..++++. |-.|.+|+++--..   +.-++.+....-..-|++..|+|.. +.++ ++..|+|++.|
T Consensus       164 tyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD  242 (433)
T KOG1354|consen  164 TYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD  242 (433)
T ss_pred             eeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence            33344456688888888874 66799999873221   1122222221223367899999965 3444 66999999999


Q ss_pred             cCCCCccceeeeeeec--------cccccccceeEEEeecCCCcEEEEEecCCeEEEEec-CCceEeEEeccccC-----
Q 022019          201 VHRPGRDFEKYSTLKG--------NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE-DNMELLYVLHGQEG-----  266 (304)
Q Consensus       201 ~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~-----  266 (304)
                      +|...-+...-..+..        .+...-..|..+.|++ .|+++++-.. -+|++||+ ...+++.++..|..     
T Consensus       243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL  320 (433)
T KOG1354|consen  243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL  320 (433)
T ss_pred             chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence            9853211111011100        0111223488899999 7778876544 68999999 45677777776642     


Q ss_pred             -------C---eEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          267 -------G---VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       267 -------~---v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                             .   -..++|+-++.+++||+ ..+..+++++..|..
T Consensus       321 c~lYEnD~IfdKFec~~sg~~~~v~TGs-y~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  321 CSLYENDAIFDKFECSWSGNDSYVMTGS-YNNVFRVFNLARGSK  363 (433)
T ss_pred             HHHhhccchhheeEEEEcCCcceEeccc-ccceEEEecCCCCcc
Confidence                   2   25588999999999999 999999999766643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.50  E-value=7.8e-11  Score=95.61  Aligned_cols=212  Identities=19%  Similarity=0.243  Sum_probs=134.7

Q ss_pred             CceeEEEEcCCCCeEEEecC----CCeEEEeeCCCCC-CccccccccccccCCccceEEEeecCCeEEEEeecCccceeC
Q 022019           61 NFLKGIKWSPDGSSFLTSSE----DKTLRIFSLPENG-ISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~----dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (304)
                      ....-++++|++++|.++..    +|.|..|++.... ....                +     ..+....-.|..++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~----------------~-----~~~~~~g~~p~~i~~~   95 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL----------------L-----NSVPSGGSSPCHIAVD   95 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE----------------E-----EEEEESSSCEEEEEEC
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE----------------e-----eeeccCCCCcEEEEEe
Confidence            34567899999999888765    5789999876431 1000                0     0111111223344568


Q ss_pred             CCccEEEEEe-CCCCEEEEEcCC-CeeeEEeecc--------cccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCC
Q 022019          136 PTSCVFASTT-RDHPIHLWDATT-GLLRCTYRAY--------DAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHR  203 (304)
Q Consensus       136 ~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~~~~~--------~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~v~d~~~  203 (304)
                      |++++|+++. .+|.|.++++.. +.........        ..........++.|+|+++++++.  ....|.+|++..
T Consensus        96 ~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~  175 (345)
T PF10282_consen   96 PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDD  175 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-T
T ss_pred             cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            9999988887 489999999986 4433321111        001123357799999999999854  677899999987


Q ss_pred             CCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC--Cce--EeEEeccc------cCCeEEEEE
Q 022019          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--NME--LLYVLHGQ------EGGVTHVQF  273 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~--~~~--~~~~~~~~------~~~v~~~~~  273 (304)
                      ....+.....+.   .......+.++|+|++..++++...++.|.+|++.  .+.  .+..+...      ......+.+
T Consensus       176 ~~~~l~~~~~~~---~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i  252 (345)
T PF10282_consen  176 DTGKLTPVDSIK---VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI  252 (345)
T ss_dssp             TS-TEEEEEEEE---CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE
T ss_pred             CCceEEEeeccc---cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEE
Confidence            543333322221   22344578999999555556666678899999987  332  33333311      125788999


Q ss_pred             CCCCcEEEEeeccCCeEEEEecc
Q 022019          274 SRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       274 ~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      +|||++|+++.+.++.|.+|++.
T Consensus       253 spdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  253 SPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             -TTSSEEEEEECTTTEEEEEEEC
T ss_pred             ecCCCEEEEEeccCCEEEEEEEe
Confidence            99999999998788999999993

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.1e-11  Score=103.88  Aligned_cols=159  Identities=16%  Similarity=0.156  Sum_probs=101.3

Q ss_pred             cCCeEEEEeecCccceeCCCccEEEEEeCC---CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-E-Ec
Q 022019          118 EGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A-GY  192 (304)
Q Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~-~~  192 (304)
                      +...+....|       +|+|+.|+.++.+   ..|++||+.+++....... ..     ...++.|+|+|+.++ + +.
T Consensus       202 ~~~~v~~p~w-------SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-~g-----~~~~~~~SpDG~~l~~~~s~  268 (433)
T PRK04922        202 SAEPILSPAW-------SPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF-RG-----INGAPSFSPDGRRLALTLSR  268 (433)
T ss_pred             CCCccccccC-------CCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-CC-----CccCceECCCCCEEEEEEeC
Confidence            3445666666       8899998887743   3699999988765432221 11     344789999999887 3 34


Q ss_pred             CC--eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEe-cCCe--EEEEecCCceEeEEeccccCC
Q 022019          193 NK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQT--SAIYREDNMELLYVLHGQEGG  267 (304)
Q Consensus       193 d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~  267 (304)
                      ++  .|++||+..+.  .   ..+    ..+.......+|+|+ +..|+.++ .+|.  |+++|+.+++.. .+..+...
T Consensus       269 ~g~~~Iy~~d~~~g~--~---~~l----t~~~~~~~~~~~spD-G~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~  337 (433)
T PRK04922        269 DGNPEIYVMDLGSRQ--L---TRL----TNHFGIDTEPTWAPD-GKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNY  337 (433)
T ss_pred             CCCceEEEEECCCCC--e---EEC----ccCCCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCC
Confidence            44  69999987632  1   111    222333567899995 55555444 4554  666777665532 23223344


Q ss_pred             eEEEEECCCCcEEEEeeccCC--eEEEEeccccee
Q 022019          268 VTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQ  300 (304)
Q Consensus       268 v~~~~~~~~~~~l~~~~~~d~--~i~vwd~~~~~~  300 (304)
                      ...++|+|||++|+..+..++  .|.+||+.+++.
T Consensus       338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~  372 (433)
T PRK04922        338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV  372 (433)
T ss_pred             ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence            557899999999987762332  699999987653

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.48  E-value=2.1e-11  Score=106.71  Aligned_cols=252  Identities=14%  Similarity=0.145  Sum_probs=156.5

Q ss_pred             hhcHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccc
Q 022019           20 EVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVN   99 (304)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~   99 (304)
                      .+..+++.|+..+.|+...-.-..    ...+...++..-.+.+.++...+.++.+|.++.||.|++.+++.........
T Consensus      1062 s~FvsgS~DGtVKvW~~~k~~~~~----~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEG----GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred             ceEEEecCCceEEEeeehhhhcCc----ceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccccee
Confidence            455666777777777542222111    1122223444567889999999999999999999999999987531110000


Q ss_pred             cccccccCCccceEEEeecCCeEEEE-eecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEE
Q 022019          100 ACSLAKDQDSYEASLVVTEGESVYDF-CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS  178 (304)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~  178 (304)
                      ...         ........+.+.++ ++..     ......++.+..-+.|..||+++......++....   .+.|++
T Consensus      1138 ~~~---------ri~n~~~~g~vv~m~a~~~-----~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~---hG~vTS 1200 (1431)
T KOG1240|consen 1138 TQV---------RIPNLKKDGVVVSMHAFTA-----IVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR---HGLVTS 1200 (1431)
T ss_pred             eee---------ecccccCCCceEEeecccc-----cccceeEEEEEeccceEEecchhhhhHHhhhcCcc---ccceeE
Confidence            000         00001111222222 2211     11123678888889999999988766555543322   228999


Q ss_pred             EEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCC--cEEEE-Ee-cCCeEEEEecC
Q 022019          179 VAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT--GMLAI-GS-YSQTSAIYRED  253 (304)
Q Consensus       179 i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~-~~-~dg~i~i~d~~  253 (304)
                      ++.+|.+..++.| ..|.+.+||+|-..       .......++..+++.+..+|..+  ...++ ++ ..+.|.+|++.
T Consensus      1201 i~idp~~~WlviGts~G~l~lWDLRF~~-------~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRV-------PILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred             EEecCCceEEEEecCCceEEEEEeecCc-------eeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence            9999999999988 88999999998731       11111234456788888877544  34444 44 57889999999


Q ss_pred             CceEeEEeccc-------------------cCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          254 NMELLYVLHGQ-------------------EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       254 ~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      ++.+...+...                   .-......+..-+..+++|+ .|..|+.||....+.
T Consensus      1274 ~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltgg-sd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1274 TGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGG-SDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             cCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecC-CccceeeccCCCccc
Confidence            88766555422                   11122334444567889999 999999999987654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=4.3e-11  Score=100.35  Aligned_cols=158  Identities=15%  Similarity=0.149  Sum_probs=103.3

Q ss_pred             ecCCeEEEEeecCccceeCCCccEEEEEeC---CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-
Q 022019          117 TEGESVYDFCWFPHMSASDPTSCVFASTTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-  191 (304)
Q Consensus       117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-  191 (304)
                      .+...+....|       +|||+.|+..+.   +..|++||+.+++... +.....     .+....|+|||+.|+ +. 
T Consensus       199 ~~~~~v~~p~w-------SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g-----~~~~~~~SPDG~~la~~~~  265 (435)
T PRK05137        199 DGSSLVLTPRF-------SPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPG-----MTFAPRFSPDGRKVVMSLS  265 (435)
T ss_pred             cCCCCeEeeEE-------CCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCC-----cccCcEECCCCCEEEEEEe
Confidence            34456777777       889998888764   4679999998886543 222221     556889999999887 43 


Q ss_pred             cCC--eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEe-cCC--eEEEEecCCceEeEEeccccC
Q 022019          192 YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQ--TSAIYREDNMELLYVLHGQEG  266 (304)
Q Consensus       192 ~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~  266 (304)
                      .++  .|++||+..+.  .   ..+    ..+........|+|+ +..|+..+ .+|  .|+++|+..++. ..+..+..
T Consensus       266 ~~g~~~Iy~~d~~~~~--~---~~L----t~~~~~~~~~~~spD-G~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~  334 (435)
T PRK05137        266 QGGNTDIYTMDLRSGT--T---TRL----TDSPAIDTSPSYSPD-GSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGG  334 (435)
T ss_pred             cCCCceEEEEECCCCc--e---EEc----cCCCCccCceeEcCC-CCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCC
Confidence            454  47777886531  1   111    223344567899995 55555544 344  588888876544 33433455


Q ss_pred             CeEEEEECCCCcEEEEeeccC--CeEEEEecccc
Q 022019          267 GVTHVQFSRDGNYLYTGGRKD--PYILCWDLRKA  298 (304)
Q Consensus       267 ~v~~~~~~~~~~~l~~~~~~d--~~i~vwd~~~~  298 (304)
                      .+....|+|||++|+..+...  ..|.+||+..+
T Consensus       335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~  368 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS  368 (435)
T ss_pred             cccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence            667789999999998776222  36888887554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=6.2e-11  Score=98.93  Aligned_cols=158  Identities=15%  Similarity=0.126  Sum_probs=101.2

Q ss_pred             cCCeEEEEeecCccceeCCCccEEEEEeC---CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-c
Q 022019          118 EGESVYDFCWFPHMSASDPTSCVFASTTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-Y  192 (304)
Q Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~  192 (304)
                      +...+...+|       +|||+.|+..+.   +..|++|++.+++.........      .+..+.|+|||+.|+ +. .
T Consensus       197 ~~~~~~~p~w-------SPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~------~~~~~~~SPDG~~La~~~~~  263 (429)
T PRK03629        197 SPQPLMSPAW-------SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR------HNGAPAFSPDGSKLAFALSK  263 (429)
T ss_pred             CCCceeeeEE-------cCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC------CcCCeEECCCCCEEEEEEcC
Confidence            3456667777       889998887643   3469999998876543322221      344689999999888 43 4


Q ss_pred             CC--eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec-CCe--EEEEecCCceEeEEeccccCC
Q 022019          193 NK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQT--SAIYREDNMELLYVLHGQEGG  267 (304)
Q Consensus       193 d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~  267 (304)
                      ++  .|++||+..+.  .   ..+    ..+...+....|+| ++..|+..+. ++.  |+++|+.++.. ..+..+...
T Consensus       264 ~g~~~I~~~d~~tg~--~---~~l----t~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~  332 (429)
T PRK03629        264 TGSLNLYVMDLASGQ--I---RQV----TDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQ  332 (429)
T ss_pred             CCCcEEEEEECCCCC--E---EEc----cCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCC
Confidence            44  58889987531  1   111    11223467899999 5555555544 444  55556665543 334334445


Q ss_pred             eEEEEECCCCcEEEEeeccC--CeEEEEecccce
Q 022019          268 VTHVQFSRDGNYLYTGGRKD--PYILCWDLRKAV  299 (304)
Q Consensus       268 v~~~~~~~~~~~l~~~~~~d--~~i~vwd~~~~~  299 (304)
                      .....|+|||++|+..+..+  ..|.+||+.+++
T Consensus       333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~  366 (429)
T PRK03629        333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  366 (429)
T ss_pred             ccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            66789999999998776233  358889988775

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.46  E-value=4e-11  Score=90.84  Aligned_cols=74  Identities=15%  Similarity=0.133  Sum_probs=57.6

Q ss_pred             ceeEEEeecCCCcEEEEEecC--CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          224 IMSAIAFSPTHTGMLAIGSYS--QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       224 ~v~~~~~~p~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      .+.-++|++ +..++++-.+.  +.+.+||+++.+....+. ...+|....|+|....|+.+. ....+++|...-...
T Consensus       320 g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vct-g~srLY~W~psg~~~  395 (447)
T KOG4497|consen  320 GAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCT-GKSRLYFWAPSGPRV  395 (447)
T ss_pred             ccceeeecC-CceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEc-CCceEEEEcCCCceE
Confidence            467799999 77777776543  569999998877655554 467899999999998888777 677899998765443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=9.6e-11  Score=94.61  Aligned_cols=202  Identities=19%  Similarity=0.312  Sum_probs=129.3

Q ss_pred             cCCCCceeEEEEcCCCC--eEEE-----ecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC
Q 022019           57 SIPNNFLKGIKWSPDGS--SFLT-----SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (304)
Q Consensus        57 ~~h~~~V~~i~~s~~~~--~l~s-----~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (304)
                      .-|...|+.+.+||.+.  .+|+     .|.-+.|+||...............             +.. ..-..+.|++
T Consensus       162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ks-------------FFk-adkvqm~WN~  227 (566)
T KOG2315|consen  162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKS-------------FFK-ADKVQMKWNK  227 (566)
T ss_pred             eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcc-------------ccc-cceeEEEecc
Confidence            34677899999999643  4443     3556789999876333221111110             001 1223455644


Q ss_pred             ccceeCCCccEEEEEeCC---------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE--E-cCCeEE
Q 022019          130 HMSASDPTSCVFASTTRD---------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA--G-YNKSVR  197 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~--~-~d~~i~  197 (304)
                      ...++    -.|++..-|         .++++.++........+...      ++|.++.|+|+++.+++  | .-..+.
T Consensus       228 ~gt~L----LvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~------GPVhdv~W~~s~~EF~VvyGfMPAkvt  297 (566)
T KOG2315|consen  228 LGTAL----LVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE------GPVHDVTWSPSGREFAVVYGFMPAKVT  297 (566)
T ss_pred             CCceE----EEEEEEeecCCCccccccceEEEEEecCceEEEecCCC------CCceEEEECCCCCEEEEEEecccceEE
Confidence            32111    012222223         35778887733333333222      29999999999988883  6 778999


Q ss_pred             EEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec---CCeEEEEecCCceEeEEeccccCCeEEEEEC
Q 022019          198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQTSAIYREDNMELLYVLHGQEGGVTHVQFS  274 (304)
Q Consensus       198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  274 (304)
                      |||++..        .+.   .-..++-.++-|+| .+++|+.++-   -|.+.|||..+.+++..+....  -+-+.|+
T Consensus       298 ifnlr~~--------~v~---df~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~  363 (566)
T KOG2315|consen  298 IFNLRGK--------PVF---DFPEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWS  363 (566)
T ss_pred             EEcCCCC--------EeE---eCCCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEc
Confidence            9999852        111   12345567899999 6667776665   3789999999999998887543  4668999


Q ss_pred             CCCcEEEEee-----ccCCeEEEEecc
Q 022019          275 RDGNYLYTGG-----RKDPYILCWDLR  296 (304)
Q Consensus       275 ~~~~~l~~~~-----~~d~~i~vwd~~  296 (304)
                      |||.+++|+.     +-|+.++||+..
T Consensus       364 PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  364 PDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CCCcEEEEEeccccEEecCCeEEEEec
Confidence            9999999987     247889999984

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.43  E-value=8.5e-13  Score=119.11  Aligned_cols=194  Identities=18%  Similarity=0.281  Sum_probs=145.2

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      ..+.|-..|.++.=+|...+.+||+.||.|++|....+..                +..........|+.+.|       
T Consensus      2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~----------------v~~~rt~g~s~vtr~~f------- 2259 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ----------------VVCFRTAGNSRVTRSRF------- 2259 (2439)
T ss_pred             EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe----------------EEEeeccCcchhhhhhh-------
Confidence            3445667788888889888999999999999998864322                22222233345555544       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE---cCCeEEEEEcCCCCcccee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~---~d~~i~v~d~~~~~~~~~~  210 (304)
                      +.+|+.+..+..||.+.+|... .++....+.|..     ....+.|-.  ..++ +|   .++.+.+||...+....- 
T Consensus      2260 ~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk-----~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~- 2330 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNK-----ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL- 2330 (2439)
T ss_pred             cccCCceeeeccCCceeecccC-CcceeccccCCc-----cccceeeee--hhhhccccCCCCCcccchhcccCcccce-
Confidence            7789999999999999999986 445555555554     556677765  4555 33   678999999876432211 


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeE
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI  290 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i  290 (304)
                          ..  ..|.+.++++++-| ...+|++|+.+|.|++||++..++++++..         ++ ...++++|+ ..|.|
T Consensus      2331 ----v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~s-s~g~i 2392 (2439)
T KOG1064|consen 2331 ----VH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGS-SEGNI 2392 (2439)
T ss_pred             ----ee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccC-cccce
Confidence                11  67888899999999 888999999999999999999888877764         44 567899999 99999


Q ss_pred             EEEecccc
Q 022019          291 LCWDLRKA  298 (304)
Q Consensus       291 ~vwd~~~~  298 (304)
                      +||++...
T Consensus      2393 kIw~~s~~ 2400 (2439)
T KOG1064|consen 2393 KIWRLSEF 2400 (2439)
T ss_pred             EEEEcccc
Confidence            99999876

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.40  E-value=5.4e-10  Score=84.31  Aligned_cols=176  Identities=19%  Similarity=0.267  Sum_probs=110.8

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCC-CccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG-ISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~  113 (304)
                      .++.||-...+...      .+ .-..+|.++.+.++  .+++.- .+.|.||...++. ....+....           
T Consensus        76 kviIWDD~k~~~i~------el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~-----------  134 (346)
T KOG2111|consen   76 KVIIWDDLKERCII------EL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRS-----------  134 (346)
T ss_pred             eEEEEecccCcEEE------EE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeeccc-----------
Confidence            56788844443332      22 24667999999765  455443 5689999987432 111111110           


Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEE-EeCCCCEEEEEcCCCee--eEEeecccccccccceEEEEECCCCcEEEE
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFAS-TTRDHPIHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPTGTKIFA  190 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~  190 (304)
                          ....+.++  .|     ..+..+||. |-.-|.|.|-|+...+.  ...+..|..     .|.+++.+-+|..+|+
T Consensus       135 ----NPkGlC~~--~~-----~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s-----~Iacv~Ln~~Gt~vAT  198 (346)
T KOG2111|consen  135 ----NPKGLCSL--CP-----TSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS-----DIACVALNLQGTLVAT  198 (346)
T ss_pred             ----CCCceEee--cC-----CCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccC-----ceeEEEEcCCccEEEE
Confidence                01112222  11     112223333 33568999999986655  355565554     9999999999999995


Q ss_pred             E-cCCe-EEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC
Q 022019          191 G-YNKS-VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (304)
Q Consensus       191 ~-~d~~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  254 (304)
                      + ..|+ |+|||..++..    +..+..  ......|.+++|+| +..+|+++|+.|+++||.++.
T Consensus       199 aStkGTLIRIFdt~~g~~----l~E~RR--G~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  199 ASTKGTLIRIFDTEDGTL----LQELRR--GVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             eccCcEEEEEEEcCCCcE----eeeeec--CCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence            4 5555 89999988532    222221  22345699999999 788999999999999998864

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.40  E-value=2.1e-10  Score=96.12  Aligned_cols=157  Identities=20%  Similarity=0.227  Sum_probs=102.6

Q ss_pred             cCCeEEEEeecCccceeCCCccEEEEEeCC---CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-c
Q 022019          118 EGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-Y  192 (304)
Q Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~  192 (304)
                      ++..+....|       +|+|++|+.+..+   ..|++||+.+++....... ..     .+.++.|+|+|+.|+ +. .
T Consensus       188 ~~~~~~~p~~-------Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~~-----~~~~~~~spDg~~l~~~~~~  254 (417)
T TIGR02800       188 SREPILSPAW-------SPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-PG-----MNGAPAFSPDGSKLAVSLSK  254 (417)
T ss_pred             CCCceecccC-------CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-CC-----CccceEECCCCCEEEEEECC
Confidence            3344555555       8899999887654   4799999988765433222 11     456789999998877 43 3


Q ss_pred             CC--eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEe-cCC--eEEEEecCCceEeEEeccccCC
Q 022019          193 NK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQ--TSAIYREDNMELLYVLHGQEGG  267 (304)
Q Consensus       193 d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~  267 (304)
                      ++  .|++||+..+.  .   ..+    ..+........|+| ++..|+..+ .++  .|+++|+.+++.. .+..+...
T Consensus       255 ~~~~~i~~~d~~~~~--~---~~l----~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~  323 (417)
T TIGR02800       255 DGNPDIYVMDLDGKQ--L---TRL----TNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGY  323 (417)
T ss_pred             CCCccEEEEECCCCC--E---EEC----CCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCC
Confidence            33  58888887531  1   111    11223345678999 455554444 344  5788888766543 44445566


Q ss_pred             eEEEEECCCCcEEEEeeccCC---eEEEEecccce
Q 022019          268 VTHVQFSRDGNYLYTGGRKDP---YILCWDLRKAV  299 (304)
Q Consensus       268 v~~~~~~~~~~~l~~~~~~d~---~i~vwd~~~~~  299 (304)
                      +..+.|+|+|++|+.++ .++   .|.+||+.++.
T Consensus       324 ~~~~~~spdg~~i~~~~-~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       324 NASPSWSPDGDLIAFVH-REGGGFNIAVMDLDGGG  357 (417)
T ss_pred             ccCeEECCCCCEEEEEE-ccCCceEEEEEeCCCCC
Confidence            78899999999999888 565   78999987753

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=8.2e-13  Score=106.59  Aligned_cols=222  Identities=18%  Similarity=0.224  Sum_probs=145.5

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      +..+.||...|..++--.+.+.+++++.|++|++|.++...-......+.          -....|..+|.++.|.    
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQ----------fTY~aHkk~i~~igfL----  793 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQ----------FTYQAHKKPIHDIGFL----  793 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceee----------eEhhhccCcccceeee----
Confidence            34678999999999887788899999999999999998543322211121          1344577788887763    


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE--EcCCeEEEEEcCCCCcccee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~--~~d~~i~v~d~~~~~~~~~~  210 (304)
                         .+.+++++  .||-|++||.--++...........+....|.++.- -+...+.+  +...+|+++|.+..+-.. .
T Consensus       794 ---~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~-E  866 (1034)
T KOG4190|consen  794 ---ADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTC-E  866 (1034)
T ss_pred             ---eccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEeccc-Ccchheeeeccchhhheeeeccccccee-e
Confidence               34445554  578899999877776654433322222223444331 12333333  388999999998743211 1


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeE
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI  290 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i  290 (304)
                      +..  ....+....+.+++..| .++.++++-.+|+|.+.|.++|+.+..++.-+-....++ .|....|+... .|.++
T Consensus       867 ~kV--cna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sa-ldHsl  941 (1034)
T KOG4190|consen  867 LKV--CNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSA-LDHSL  941 (1034)
T ss_pred             EEe--ccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhc-cccee
Confidence            111  11234456688999999 788999999999999999999999988875544444444 34555666666 67777


Q ss_pred             EE-Eeccccee
Q 022019          291 LC-WDLRKAVQ  300 (304)
Q Consensus       291 ~v-wd~~~~~~  300 (304)
                      .+ |..-+|..
T Consensus       942 aVnWhaldgim  952 (1034)
T KOG4190|consen  942 AVNWHALDGIM  952 (1034)
T ss_pred             EeeehhcCCee
Confidence            77 76655543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.37  E-value=3.8e-10  Score=83.29  Aligned_cols=204  Identities=14%  Similarity=0.101  Sum_probs=131.4

Q ss_pred             eEEEEcC-----CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           64 KGIKWSP-----DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        64 ~~i~~s~-----~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      ..|.|-|     ...+||.|+..|...+|...+++.....-                ..+...|.-+   ...   .-..
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~c----------------d~snn~v~~~---~r~---cd~~  128 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQC----------------DVSNNDVTLV---KRY---CDLK  128 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeee----------------cccccchhhh---hhh---cccc
Confidence            4566666     33589999999999999988654321110                0011111100   000   0011


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCccceeeeeeecc
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGN  217 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~  217 (304)
                      .-+..++.|.++++.+++.+...........     .+.++++++++++++ +|....|..|.+...+.....+..    
T Consensus       129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~-----~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~----  199 (344)
T KOG4532|consen  129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNL-----TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE----  199 (344)
T ss_pred             cceeeccCCcceeEEEEecCcccceeecccc-----ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe----
Confidence            2366778888899988876544333332211     478999999999999 678899999999875443332111    


Q ss_pred             ccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE-eEEe----ccccCCeEEEEECCCCcE--EEEeeccCCeE
Q 022019          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVL----HGQEGGVTHVQFSRDGNY--LYTGGRKDPYI  290 (304)
Q Consensus       218 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~----~~~~~~v~~~~~~~~~~~--l~~~~~~d~~i  290 (304)
                       ......--+..|+. ....+|+++.||.+.|||++.... ....    ..|.+.+..+.|++-|..  |+..- .=+.+
T Consensus       200 -a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE-hfs~~  276 (344)
T KOG4532|consen  200 -APTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE-HFSRV  276 (344)
T ss_pred             -cccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec-CcceE
Confidence             11222245678888 677999999999999999997653 2222    358889999999987642  33333 56789


Q ss_pred             EEEecccceee
Q 022019          291 LCWDLRKAVQV  301 (304)
Q Consensus       291 ~vwd~~~~~~~  301 (304)
                      .+-|+++++..
T Consensus       277 hv~D~R~~~~~  287 (344)
T KOG4532|consen  277 HVVDTRNYVNH  287 (344)
T ss_pred             EEEEcccCcee
Confidence            99999987643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.36  E-value=1.1e-10  Score=100.70  Aligned_cols=220  Identities=14%  Similarity=0.104  Sum_probs=142.5

Q ss_pred             CceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc----------
Q 022019           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH----------  130 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------  130 (304)
                      +++++.++-.  +||+.|. --.+.+||+..+..............+ .............|+...+.+.          
T Consensus         8 ~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H-~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~   83 (967)
T KOG0974|consen    8 GPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH-RGEGKVKLLSGKIVTCAKSDEVYVKEASNQII   83 (967)
T ss_pred             ccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccc-cccccceeccceEEEEEeecceeecchhhhhh
Confidence            4455555543  5666544 346999999887765444333322222 0000011111112222221110          


Q ss_pred             --------cceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEc
Q 022019          131 --------MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDV  201 (304)
Q Consensus       131 --------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~  201 (304)
                              ...+.-+...++.+..+..+.+||...+............ .-....-+-++++.-++++| .-+.|.+|+.
T Consensus        84 ~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~-~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~  162 (967)
T KOG0974|consen   84 ERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERC-TLYSSLIIGDSAEELYIASGSVFGEIIVWKP  162 (967)
T ss_pred             hhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceE-EEEeEEEEeccCcEEEEEeccccccEEEEec
Confidence                    0122335566888888889999999877655444332210 00122334556677778876 8899999999


Q ss_pred             CCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeE-EeccccCCeEEEEECCCCcEE
Q 022019          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVQFSRDGNYL  280 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l  280 (304)
                      .....+        ....+|.+.+.++.|+- ++.++++.|+|.++++|++++.+... ..-+|...|..+.|.|+  .+
T Consensus       163 ~~dn~p--------~~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i  231 (967)
T KOG0974|consen  163 HEDNKP--------IRLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI  231 (967)
T ss_pred             cccCCc--------ceecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence            732211        13488999999999999 78899999999999999999887655 66689999999999998  89


Q ss_pred             EEeeccCCeEEEEeccc
Q 022019          281 YTGGRKDPYILCWDLRK  297 (304)
Q Consensus       281 ~~~~~~d~~i~vwd~~~  297 (304)
                      ++++ .|.+.++|+...
T Consensus       232 ~t~g-edctcrvW~~~~  247 (967)
T KOG0974|consen  232 ITVG-EDCTCRVWGVNG  247 (967)
T ss_pred             EEec-cceEEEEEeccc
Confidence            9999 999999996543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.34  E-value=3.3e-11  Score=93.41  Aligned_cols=159  Identities=13%  Similarity=0.184  Sum_probs=109.1

Q ss_pred             cCccceeCCCccEEEEEeCCCCEEEEEcCCCee----eEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcC
Q 022019          128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLL----RCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVH  202 (304)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~  202 (304)
                      .+.....++.+++++++..+....++++.....    ........      ..+++.|..+.....++ .-|-++-+|+-
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~------~~~ai~~~~~~~sv~v~dkagD~~~~di~  137 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK------RPTAISFIREDTSVLVADKAGDVYSFDIL  137 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc------CcceeeeeeccceEEEEeecCCceeeeee
Confidence            334445588999999998888877877764432    22222221      33455665555444432 33444444432


Q ss_pred             CCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-cccCCeEEEEECCCCcEEE
Q 022019          203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~  281 (304)
                      ....      .......+|-..++.++|+| ++++|+++..|..|++-.......+..+- ||+.-|..++.-++. .|+
T Consensus       138 s~~~------~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~Ll  209 (390)
T KOG3914|consen  138 SADS------GRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLL  209 (390)
T ss_pred             cccc------cCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eee
Confidence            2110      11112267888999999999 67899999999999998887766666664 799999999998654 588


Q ss_pred             EeeccCCeEEEEecccceee
Q 022019          282 TGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       282 ~~~~~d~~i~vwd~~~~~~~  301 (304)
                      ++| .|++|++||+.+|+++
T Consensus       210 S~s-GD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  210 SGS-GDKTLRLWDITSGKLL  228 (390)
T ss_pred             ecC-CCCcEEEEecccCCcc
Confidence            888 8999999999999876

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.34  E-value=7.5e-11  Score=89.79  Aligned_cols=219  Identities=14%  Similarity=0.254  Sum_probs=145.5

Q ss_pred             ceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      ..++.++||.+.|++...-|...-+++.+.|.+++||--.+..               .+-..+......++.++.+   
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~---------------q~wpsI~~~mP~~~~~~~y---   76 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSG---------------QYWPSIYHYMPSPCSAMEY---   76 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccc---------------ccCchhhhhCCCCceEeee---
Confidence            3455788999999999999988889999999999999543221               1111122223355666665   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCe--------------
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKS--------------  195 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~--------------  195 (304)
                          .++...|++|-..|++.-+.+...-....+ ......|...+..+-|+-....++ +|.|..              
T Consensus        77 ----~~e~~~L~vg~~ngtvtefs~sedfnkm~~-~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~  151 (404)
T KOG1409|consen   77 ----VSESRRLYVGQDNGTVTEFALSEDFNKMTF-LKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGG  151 (404)
T ss_pred             ----eccceEEEEEEecceEEEEEhhhhhhhcch-hhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccc
Confidence                556778888888898888876532111111 001112223555555554444444 223322              


Q ss_pred             -------------------------EEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEE
Q 022019          196 -------------------------VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY  250 (304)
Q Consensus       196 -------------------------i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~  250 (304)
                                               |.+..+...      ...+.....+|.+.+++++|.| ...+|++|..|..+.+|
T Consensus       152 Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~------~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~w  224 (404)
T KOG1409|consen  152 YNFETPASALQFDALYAFVGDHSGQITMLKLEQN------GCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMW  224 (404)
T ss_pred             eEeeccCCCCceeeEEEEecccccceEEEEEeec------CCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEE
Confidence                                     211111110      0112234477889999999999 88899999999999999


Q ss_pred             ecCCce-EeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          251 REDNME-LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       251 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      |+...+ ....+.+|...|..+..-+--+.|++++ .||.|.+||++....
T Consensus       225 digg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~-edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  225 DIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG-EDGGIVVWNMNVKRV  274 (404)
T ss_pred             eccCCcceeeeeccchhhhhhhhhhhhheeeeecc-CCCeEEEEeccceee
Confidence            997554 5567778999999999888888999999 999999999976543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=7.2e-10  Score=92.99  Aligned_cols=158  Identities=14%  Similarity=0.129  Sum_probs=96.4

Q ss_pred             CCeEEEEeecCccceeCCCccEEEEEeCC-C--CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cC
Q 022019          119 GESVYDFCWFPHMSASDPTSCVFASTTRD-H--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN  193 (304)
Q Consensus       119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d  193 (304)
                      ...+....|       +|||+.|+..+.+ +  .|++||+.+++.........      ......|+|||+.|+ +. .+
T Consensus       217 ~~~~~~p~w-------SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g------~~~~~~wSPDG~~La~~~~~~  283 (448)
T PRK04792        217 PEPLMSPAW-------SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG------INGAPRFSPDGKKLALVLSKD  283 (448)
T ss_pred             CCcccCceE-------CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC------CcCCeeECCCCCEEEEEEeCC
Confidence            345555555       8899988876543 3  58899998876543222211      334689999999887 43 55


Q ss_pred             Ce--EEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC--eEEEEecCCceEeEEeccccCCeE
Q 022019          194 KS--VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGVT  269 (304)
Q Consensus       194 ~~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~  269 (304)
                      +.  |+++|+..+.  .   ..+    ..+.......+|+|++..++++...++  .|+++|+.+++... +........
T Consensus       284 g~~~Iy~~dl~tg~--~---~~l----t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~  353 (448)
T PRK04792        284 GQPEIYVVDIATKA--L---TRI----TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNL  353 (448)
T ss_pred             CCeEEEEEECCCCC--e---EEC----ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCc
Confidence            64  7777876531  1   111    122334567899995554545544444  46667777665432 221222345


Q ss_pred             EEEECCCCcEEEEeeccCC--eEEEEecccce
Q 022019          270 HVQFSRDGNYLYTGGRKDP--YILCWDLRKAV  299 (304)
Q Consensus       270 ~~~~~~~~~~l~~~~~~d~--~i~vwd~~~~~  299 (304)
                      ..+|+|||++|+..+..++  .|.++|+.+++
T Consensus       354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~  385 (448)
T PRK04792        354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGA  385 (448)
T ss_pred             CeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence            6799999999988763444  45567777664

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.30  E-value=4.9e-10  Score=83.66  Aligned_cols=187  Identities=17%  Similarity=0.257  Sum_probs=123.8

Q ss_pred             CCceeEEEEcC---CCC-eEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC
Q 022019           60 NNFLKGIKWSP---DGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        60 ~~~V~~i~~s~---~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (304)
                      ...+..|.|.-   +|. .++-+..+|.|.++..................        +..   ....++       .++
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k--------i~~---~~~lsl-------D~~  130 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK--------ISV---VEALSL-------DIS  130 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh--------hhh---eeeeEE-------Eee
Confidence            44577788864   555 56667788999999776433222211111000        000   011233       346


Q ss_pred             CCccEEEEEeCCCCEEEEEcCCCeee--EEeecccccccccceEEEEECCCCc-EEEEE-cCCeEEEEEcCCCCccceee
Q 022019          136 PTSCVFASTTRDHPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGT-KIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       136 ~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                      +.+..++++..+|.+.+-+.......  +.++.|..     +++...|+.... .+++| .|+.+..||+|.+..     
T Consensus       131 ~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~-----E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-----  200 (339)
T KOG0280|consen  131 TSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF-----EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-----  200 (339)
T ss_pred             ccCceEEEEcCCCcEEEEecceeeeeecccccccce-----eeeeeecccCCCceEEecCCCceEEEEEecCCcc-----
Confidence            67778999999999986665544333  35565554     888889987554 45566 999999999995431     


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC-ceEeEEeccccCCeEEEEECCC
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVQFSRD  276 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~  276 (304)
                       .+-....-|...|.++.-+|..+.++++|++|..|++||.++ +++++.-. -.+.|..+.++|.
T Consensus       201 -~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  201 -FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPE  264 (339)
T ss_pred             -eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecch
Confidence             111122457778999999987889999999999999999995 56665554 3478899998884

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.30  E-value=7.2e-09  Score=79.90  Aligned_cols=214  Identities=13%  Similarity=0.184  Sum_probs=137.0

Q ss_pred             ecCCCCceeEEEEcCCCCeEEEecC---CCeEEEeeCCCC--CCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           56 SSIPNNFLKGIKWSPDGSSFLTSSE---DKTLRIFSLPEN--GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~~~l~s~~~---dg~v~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      +-.+.+.++-|+|+|++++|.++..   +|.|..|.++..  .+. .++.             .... +.       .|.
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-~ln~-------------~~~~-g~-------~p~   92 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-FLNR-------------QTLP-GS-------PPC   92 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-Eeec-------------cccC-CC-------CCe
Confidence            3456777899999999999988754   577888877642  210 0000             0000 11       113


Q ss_pred             cceeCCCccEEEEEeC-CCCEEEEEcCC-CeeeEE---eecccc----cccccceEEEEECCCCcEEEE-E-cCCeEEEE
Q 022019          131 MSASDPTSCVFASTTR-DHPIHLWDATT-GLLRCT---YRAYDA----VDEITAAFSVAFNPTGTKIFA-G-YNKSVRVF  199 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~~~---~~~~~~----~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~v~  199 (304)
                      .++++++|++++++.. .|.|.++-+.. |.....   ......    ......+....+.|+++++++ . .-..|.+|
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y  172 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY  172 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence            3466899999988865 57899999865 433222   211111    111223778999999999995 4 66789999


Q ss_pred             EcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEE-EecCCeEEEEecCCc----eEeEEec------cccCCe
Q 022019          200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI-GSYSQTSAIYREDNM----ELLYVLH------GQEGGV  268 (304)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~i~i~d~~~~----~~~~~~~------~~~~~v  268 (304)
                      ++..+.-.......     .......+.|.|+| ++++..+ .--+++|.+|.....    +.++.+.      ....+.
T Consensus       173 ~~~dg~L~~~~~~~-----v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~  246 (346)
T COG2706         173 DLDDGKLTPADPAE-----VKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA  246 (346)
T ss_pred             EcccCccccccccc-----cCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence            99853221111111     12334578999999 5555544 555899999988763    2233222      123467


Q ss_pred             EEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          269 THVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       269 ~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      ..+..+|||++|+++.+....|.+|.+..
T Consensus       247 aaIhis~dGrFLYasNRg~dsI~~f~V~~  275 (346)
T COG2706         247 AAIHISPDGRFLYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             eEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            88999999999999987778898888765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.30  E-value=3.3e-09  Score=97.19  Aligned_cols=227  Identities=13%  Similarity=0.179  Sum_probs=134.6

Q ss_pred             ceeEEEEcCCCCeEEEec-CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCC-eEEEEeecCccceeCC-Cc
Q 022019           62 FLKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE-SVYDFCWFPHMSASDP-TS  138 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~-~~  138 (304)
                      ...+|++++++..|+.+. ..+.|+++|+.++....-......  ...       ...+. .....-..|..++++| ++
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~--g~~-------~~gg~~~~~~~ln~P~gVa~dp~~g  695 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTK--GSD-------YQGGKKGTSQVLNSPWDVCFEPVNE  695 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcc--cCC-------CCCChhhhHhhcCCCeEEEEecCCC
Confidence            357889998887665554 457899999875432110000000  000       00000 0000112344556687 56


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccc----------cccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCc
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDA----------VDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGR  206 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~  206 (304)
                      .++++.+.++.|++||..++... .+.....          .........|+++|++..|+ +. .++.|++||+.++..
T Consensus       696 ~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~  774 (1057)
T PLN02919        696 KVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS  774 (1057)
T ss_pred             eEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE
Confidence            67777778899999998876543 2211100          00112456899999998666 43 779999999876432


Q ss_pred             cceeeee-----eeccc--------cccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-c---------
Q 022019          207 DFEKYST-----LKGNK--------EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-G---------  263 (304)
Q Consensus       207 ~~~~~~~-----~~~~~--------~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~---------  263 (304)
                      .......     .....        .........++++| ++.++++-+.++.|++||..++....... +         
T Consensus       775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~  853 (1057)
T PLN02919        775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA  853 (1057)
T ss_pred             EEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence            1100000     00000        00111246889999 66788888899999999998776543221 1         


Q ss_pred             ---ccCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          264 ---QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       264 ---~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                         .-.....++++++|+.+++-+ .+++|++||+++++.
T Consensus       854 ~~a~l~~P~GIavd~dG~lyVaDt-~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        854 LKAQLSEPAGLALGENGRLFVADT-NNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cccccCCceEEEEeCCCCEEEEEC-CCCEEEEEECCCCcc
Confidence               112467899999999777777 899999999988754

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=1.5e-09  Score=91.13  Aligned_cols=161  Identities=14%  Similarity=0.118  Sum_probs=101.4

Q ss_pred             ecCCeEEEEeecCccceeCCCccEEEEEeCC---CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-
Q 022019          117 TEGESVYDFCWFPHMSASDPTSCVFASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-  191 (304)
Q Consensus       117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-  191 (304)
                      .+...+....|       +|+|+.|+..+.+   ..|++||+.+++....... ..     .+....|+|+|+.|+ +. 
T Consensus       196 ~~~~~~~~p~w-------SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~g-----~~~~~~~SpDG~~la~~~~  262 (430)
T PRK00178        196 QSREPILSPRW-------SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-EG-----LNGAPAWSPDGSKLAFVLS  262 (430)
T ss_pred             cCCCceeeeeE-------CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-CC-----CcCCeEECCCCCEEEEEEc
Confidence            34456666666       8899988877643   3689999988865432221 11     344689999999887 33 


Q ss_pred             cCC--eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC--eEEEEecCCceEeEEeccccCC
Q 022019          192 YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGG  267 (304)
Q Consensus       192 ~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~  267 (304)
                      .++  .|++||+..+.  .   ..+    ..+........|+|++..++++...+|  .|+++|+.+++... +......
T Consensus       263 ~~g~~~Iy~~d~~~~~--~---~~l----t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~  332 (430)
T PRK00178        263 KDGNPEIYVMDLASRQ--L---SRV----TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNY  332 (430)
T ss_pred             cCCCceEEEEECCCCC--e---EEc----ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCC
Confidence            444  68888987632  1   111    122334566789995555555544444  47777887765432 2212233


Q ss_pred             eEEEEECCCCcEEEEeeccCC--eEEEEeccccee
Q 022019          268 VTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQ  300 (304)
Q Consensus       268 v~~~~~~~~~~~l~~~~~~d~--~i~vwd~~~~~~  300 (304)
                      .....|+|||++|+..+..++  .|.+||+.+++.
T Consensus       333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             ccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence            456789999999988773333  588899887643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.28  E-value=6e-10  Score=90.61  Aligned_cols=155  Identities=19%  Similarity=0.239  Sum_probs=119.7

Q ss_pred             CCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEE------CC--------------CCcEEEEE-cCC
Q 022019          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF------NP--------------TGTKIFAG-YNK  194 (304)
Q Consensus       136 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~------~~--------------~~~~l~~~-~d~  194 (304)
                      |...++|....||.+++|+...++....+........  ...+..|      +|              +...++-| ..|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~--t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g   80 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSG--TCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG   80 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccC--cceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence            4556899999999999999998887776654332211  2333333      22              22345556 889


Q ss_pred             eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEEC
Q 022019          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS  274 (304)
Q Consensus       195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  274 (304)
                      .|.+|++..++      .........|.+.|.++.++. .-..|.+++.|+.+..|+......+..+.+....+.+++.+
T Consensus        81 ~v~~ys~~~g~------it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is  153 (541)
T KOG4547|consen   81 SVLLYSVAGGE------ITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCIS  153 (541)
T ss_pred             cEEEEEecCCe------EEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEc
Confidence            99999997642      112222367889999999988 66689999999999999999999999999888899999999


Q ss_pred             CCCcEEEEeeccCCeEEEEecccceeee
Q 022019          275 RDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       275 ~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      |||..|++++   +.|++||+++++.+.
T Consensus       154 ~D~~~l~~as---~~ik~~~~~~kevv~  178 (541)
T KOG4547|consen  154 PDGKILLTAS---RQIKVLDIETKEVVI  178 (541)
T ss_pred             CCCCEEEecc---ceEEEEEccCceEEE
Confidence            9999999887   579999999998765

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.28  E-value=6e-09  Score=77.95  Aligned_cols=203  Identities=11%  Similarity=0.156  Sum_probs=113.7

Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC-ccEE
Q 022019           63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT-SCVF  141 (304)
Q Consensus        63 V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~l  141 (304)
                      =..++||||+..||.+...|+|++||+....+. .+.....          ....-...|..+.|.+...  ++. ...|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~----------~~~d~~~Aiagl~Fl~~~~--s~~ws~EL  112 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMS----------FPGDLSDAIAGLIFLEYKK--SAQWSYEL  112 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccc----------cCCccccceeeeEeecccc--ccccceeE
Confidence            456899999999999999999999999754332 1111110          0011234566666654431  222 2346


Q ss_pred             EEEeCCCCEEEEEcCCC-----eeeEEeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCccceeeeee
Q 022019          142 ASTTRDHPIHLWDATTG-----LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       142 ~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      ++...+|.++-|-+..+     +....+....  ..+..|.++.++|..++|++|  ....-....              
T Consensus       113 lvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~--~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~--------------  176 (282)
T PF15492_consen  113 LVINYRGQLRSYLVSVGTNQGYQENHSFSFSS--HYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK--------------  176 (282)
T ss_pred             EEEeccceeeeEEEEcccCCcceeeEEEEecc--cCCCceeEEEEcCCCCEEEEeccCCCCCcccc--------------
Confidence            67778888887776432     2333333322  233489999999998888844  322100110              


Q ss_pred             eccccccccceeEEEeecCCCcEEEE-EecCCe------EEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccC
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAI-GSYSQT------SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD  287 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~------i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d  287 (304)
                           +....+++-..-.+...+..+ ...|+.      ..+|.+-+.+...........|..|..||||..|++.. .+
T Consensus       177 -----a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih-~s  250 (282)
T PF15492_consen  177 -----ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH-FS  250 (282)
T ss_pred             -----ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE-cC
Confidence                 011112222221111112211 221211      12333332222222223466899999999999999999 99


Q ss_pred             CeEEEEeccccee
Q 022019          288 PYILCWDLRKAVQ  300 (304)
Q Consensus       288 ~~i~vwd~~~~~~  300 (304)
                      |.|.+|++-+-++
T Consensus       251 G~lsLW~iPsL~~  263 (282)
T PF15492_consen  251 GSLSLWEIPSLRL  263 (282)
T ss_pred             CeEEEEecCcchh
Confidence            9999999976543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.24  E-value=6.9e-11  Score=98.64  Aligned_cols=168  Identities=16%  Similarity=0.248  Sum_probs=119.4

Q ss_pred             ceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCee-eEEeecccccccccceEEEEECCC-CcEE
Q 022019          111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNPT-GTKI  188 (304)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~i~~~~~-~~~l  188 (304)
                      ..-..-+|+..++++.|+|.    +|+  .+++++.|-.+..||+++... ...+..-..     ....++|+.. +..+
T Consensus       106 Ief~lhghsraitd~n~~~q----~pd--Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s-----~asqVkwnyk~p~vl  174 (1081)
T KOG0309|consen  106 IEFVLHGHSRAITDINFNPQ----HPD--VLATCSVDTYVHAWDMRSPHRPFYSTSSWRS-----AASQVKWNYKDPNVL  174 (1081)
T ss_pred             eEEEEecCccceeccccCCC----CCc--ceeeccccccceeeeccCCCcceeeeecccc-----cCceeeecccCcchh
Confidence            33445667788999999876    333  799999999999999987542 222222111     5567899874 4555


Q ss_pred             EEEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-------------
Q 022019          189 FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-------------  255 (304)
Q Consensus       189 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-------------  255 (304)
                      +.+..+.|.+||++.++.+...+       ++|...+..++|+......+++++.||+|++||....             
T Consensus       175 asshg~~i~vwd~r~gs~pl~s~-------K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~p  247 (1081)
T KOG0309|consen  175 ASSHGNDIFVWDLRKGSTPLCSL-------KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFP  247 (1081)
T ss_pred             hhccCCceEEEeccCCCcceEEe-------cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCc
Confidence            56688899999999875444332       5577778888888755567888999999999985321             


Q ss_pred             ------------------------------------------eEeEEeccccCCeEEEEECCCC----------cEEEEe
Q 022019          256 ------------------------------------------ELLYVLHGQEGGVTHVQFSRDG----------NYLYTG  283 (304)
Q Consensus       256 ------------------------------------------~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~  283 (304)
                                                                +++.+|.||...|....|-..+          -.|+|=
T Consensus       248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTW  327 (1081)
T KOG0309|consen  248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTW  327 (1081)
T ss_pred             ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEe
Confidence                                                      3556677787777666663322          258888


Q ss_pred             eccCCeEEEEeccc
Q 022019          284 GRKDPYILCWDLRK  297 (304)
Q Consensus       284 ~~~d~~i~vwd~~~  297 (304)
                      + .|..+++|-+.+
T Consensus       328 S-kD~~lrlWpI~~  340 (1081)
T KOG0309|consen  328 S-KDQTLRLWPIDS  340 (1081)
T ss_pred             e-cCCceEeeeccH
Confidence            8 999999998765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=2e-08  Score=83.25  Aligned_cols=193  Identities=13%  Similarity=0.062  Sum_probs=111.6

Q ss_pred             ceeEEEEcCCCCe-EEEecC---CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           62 FLKGIKWSPDGSS-FLTSSE---DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        62 ~V~~i~~s~~~~~-l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      .+....|+|||+. ++..+.   +..|.++|+.+++..                  .............|       +||
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~------------------~lt~~~g~~~~~~~-------SPD  243 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE------------------KIASSQGMLVVSDV-------SKD  243 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE------------------EEecCCCcEEeeEE-------CCC
Confidence            6778999999984 554443   346888888654321                  11111222333444       889


Q ss_pred             ccEEEEE-eCC--CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCC--eEEEEEcCCCCcccee
Q 022019          138 SCVFAST-TRD--HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRPGRDFEK  210 (304)
Q Consensus       138 ~~~l~~~-~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~--~i~v~d~~~~~~~~~~  210 (304)
                      |+.++.. +.+  ..|+++|+.+++... +.....     ......|+|||+.|+ ++ ..+  .|++.|+..+..    
T Consensus       244 G~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~-----~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~----  313 (419)
T PRK04043        244 GSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPG-----IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV----  313 (419)
T ss_pred             CCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCC-----ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe----
Confidence            9766554 333  468888988776443 322221     123568999999888 54 333  577777765321    


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecC--------CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEE
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS--------QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT  282 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  282 (304)
                       ..+..  .+.    ....|+|++..++++....        ..|.+.|+.++.. ..+... .......|+|||+.|+.
T Consensus       314 -~rlt~--~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f  384 (419)
T PRK04043        314 -EQVVF--HGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMF  384 (419)
T ss_pred             -EeCcc--CCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEE
Confidence             11111  111    1248999555555554433        3688889877754 344432 23346899999998876


Q ss_pred             eeccCC--eEEEEecccc
Q 022019          283 GGRKDP--YILCWDLRKA  298 (304)
Q Consensus       283 ~~~~d~--~i~vwd~~~~  298 (304)
                      .....+  .|.+.++...
T Consensus       385 ~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        385 IKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEccCCcEEEEEEecCCC
Confidence            652323  4666676553

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.22  E-value=7.4e-09  Score=82.59  Aligned_cols=174  Identities=16%  Similarity=0.166  Sum_probs=121.7

Q ss_pred             EcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeC
Q 022019           68 WSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR  146 (304)
Q Consensus        68 ~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  146 (304)
                      |++ +|.+++..|. |...|.+...+-                   .+...+...|.-..+       ..+++-++.|..
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~-------------------~iqv~~~~~VrY~r~-------~~~~e~~vigt~  379 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGY-------------------SIQVGKKGGVRYRRI-------QVDPEGDVIGTN  379 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCe-------------------eEEcCCCCceEEEEE-------ccCCcceEEecc
Confidence            444 6888888775 566666544221                   133344444544443       445667888999


Q ss_pred             CC-CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccc
Q 022019          147 DH-PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI  224 (304)
Q Consensus       147 dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (304)
                      || .+-++|..+++........+      .|.++..+|+|++++++ ....+.+.|+.++..        ........+-
T Consensus       380 dgD~l~iyd~~~~e~kr~e~~lg------~I~av~vs~dGK~~vvaNdr~el~vididngnv--------~~idkS~~~l  445 (668)
T COG4946         380 DGDKLGIYDKDGGEVKRIEKDLG------NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV--------RLIDKSEYGL  445 (668)
T ss_pred             CCceEEEEecCCceEEEeeCCcc------ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe--------eEecccccce
Confidence            98 89999999887665444333      88999999999999988 667899999987421        1111344567


Q ss_pred             eeEEEeecCCCcEEEEEecCC----eEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          225 MSAIAFSPTHTGMLAIGSYSQ----TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       225 v~~~~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      |+.++||| +++++|-+--+|    .|++||+..++... .......=.+-+|.|||++|+--+
T Consensus       446 Itdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~-vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         446 ITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYD-VTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             eEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEE-ecCCcccccCcccCCCCcEEEEEe
Confidence            99999999 888999887765    59999998876543 333344446789999999987665

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.21  E-value=5.6e-10  Score=86.74  Aligned_cols=164  Identities=15%  Similarity=0.135  Sum_probs=104.6

Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEE
Q 022019           63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (304)
Q Consensus        63 V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (304)
                      +..+..++.+++||.+..+....++++.........                     ..+.++.-.|....+-.+.....
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl---------------------~~~~~v~~~~~ai~~~~~~~sv~  123 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKL---------------------LDVSCVPKRPTAISFIREDTSVL  123 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCccee---------------------eeEeecccCcceeeeeeccceEE
Confidence            445667788888988888877777777644220000                     11222222222222222333344


Q ss_pred             EEeCCC---CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccc
Q 022019          143 STTRDH---PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       143 ~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                      .+..-|   .+.+|....+...      ...+|.+.++.++|+||+++|+++ .|..|++-.....       ..+....
T Consensus       124 v~dkagD~~~~di~s~~~~~~~------~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-------f~Iesfc  190 (390)
T KOG3914|consen  124 VADKAGDVYSFDILSADSGRCE------PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-------FVIESFC  190 (390)
T ss_pred             EEeecCCceeeeeecccccCcc------hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-------cchhhhc
Confidence            443334   4444444333222      223555689999999999999987 9999999776432       2233334


Q ss_pred             cccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec
Q 022019          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH  262 (304)
Q Consensus       219 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  262 (304)
                      .||...|..++.-+ + +.|++|+.|+++++||+.+++.+.++.
T Consensus       191 lGH~eFVS~isl~~-~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  191 LGHKEFVSTISLTD-N-YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             cccHhheeeeeecc-C-ceeeecCCCCcEEEEecccCCcccccc
Confidence            78999999999987 3 368999999999999999998776653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=1.9e-09  Score=90.07  Aligned_cols=213  Identities=17%  Similarity=0.188  Sum_probs=139.2

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      +.+....|+.|+....++|.|+.||.++|-.+.+.........  ......-.......+|+..|..+.|       +.+
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--laa~snLsmNQtLeGH~~sV~vvTW-------Ne~   82 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG--LAAASNLSMNQTLEGHNASVMVVTW-------NEN   82 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc--cccccccchhhhhccCcceEEEEEe-------ccc
Confidence            3455688999999999999999999999998876554333222  1122223334466788899999999       557


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCC--------Cccc
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP--------GRDF  208 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~--------~~~~  208 (304)
                      .+.|-+...+|-|.+|-+-.|+....+...   ...+.|.+++|+.+|..|+.. .||.|.+=.+...        +...
T Consensus        83 ~QKLTtSDt~GlIiVWmlykgsW~EEMiNn---RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l  159 (1189)
T KOG2041|consen   83 NQKLTTSDTSGLIIVWMLYKGSWCEEMINN---RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLL  159 (1189)
T ss_pred             cccccccCCCceEEEEeeecccHHHHHhhC---cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhec
Confidence            778989999999999999877643332221   233478899999999888844 7877755433221        0000


Q ss_pred             ------------------------------------eeeeeeeccccccccceeEEEee--------cCCCcEEEEEecC
Q 022019          209 ------------------------------------EKYSTLKGNKEGQAGIMSAIAFS--------PTHTGMLAIGSYS  244 (304)
Q Consensus       209 ------------------------------------~~~~~~~~~~~~~~~~v~~~~~~--------p~~~~~l~~~~~d  244 (304)
                                                          .+..............+..+.|.        | +...|+++-.+
T Consensus       160 ~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~p-drP~lavcy~n  238 (1189)
T KOG2041|consen  160 AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPP-DRPRLAVCYAN  238 (1189)
T ss_pred             cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCC-CCCEEEEEEcC
Confidence                                                00000000111111224455554        3 45688999999


Q ss_pred             CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       245 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      |.+.|..-.+......+.. ...+..+.|+++|..|+.+|
T Consensus       239 Gr~QiMR~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG  277 (1189)
T KOG2041|consen  239 GRMQIMRSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCG  277 (1189)
T ss_pred             ceehhhhhcCCCCCeEEec-ccEeecceecCCCcEEEEcc
Confidence            9999887655443333432 36789999999999999998

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.17  E-value=1.3e-08  Score=84.86  Aligned_cols=156  Identities=13%  Similarity=0.090  Sum_probs=91.2

Q ss_pred             eeCCCccE--E-EEEeCCC--CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCC----eEEEEEc
Q 022019          133 ASDPTSCV--F-ASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK----SVRVFDV  201 (304)
Q Consensus       133 ~~~~~~~~--l-~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~----~i~v~d~  201 (304)
                      .|+|||+.  + ++...+|  .|++.++.+++.........      ......|+|||+.|+ ++ .+|    .+.+|++
T Consensus       191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g------~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~  264 (428)
T PRK01029        191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG------NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSL  264 (428)
T ss_pred             eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC------CccceEECCCCCEEEEEECCCCCcceeEEEeec
Confidence            34889875  2 2343443  58888998876544333222      344689999999988 44 233    3344666


Q ss_pred             CCCC-ccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEE--ecCC-ceEeEEeccccCCeEEEEECCCC
Q 022019          202 HRPG-RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY--REDN-MELLYVLHGQEGGVTHVQFSRDG  277 (304)
Q Consensus       202 ~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~--d~~~-~~~~~~~~~~~~~v~~~~~~~~~  277 (304)
                      ..+. ...   ..+.   ..........+|+|++..++++...+|...||  ++.. +.....+..+...+....|+|||
T Consensus       265 ~~g~~g~~---~~lt---~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG  338 (428)
T PRK01029        265 ETGAIGKP---RRLL---NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG  338 (428)
T ss_pred             ccCCCCcc---eEee---cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence            5421 111   1111   11122345679999544445455456654555  4432 23344455455567889999999


Q ss_pred             cEEEEeeccC--CeEEEEeccccee
Q 022019          278 NYLYTGGRKD--PYILCWDLRKAVQ  300 (304)
Q Consensus       278 ~~l~~~~~~d--~~i~vwd~~~~~~  300 (304)
                      ++|+..+..+  ..|.+||+.+++.
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~  363 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRD  363 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCe
Confidence            9998776233  3799999987754

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.17  E-value=1.3e-09  Score=80.11  Aligned_cols=109  Identities=14%  Similarity=0.130  Sum_probs=79.3

Q ss_pred             ceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEec
Q 022019          175 AAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~  252 (304)
                      .|.+++-+|..+.++ +| .||.+.+||.+..       ..+......|+.++..+-|+|.++..|+++++||.+.-||.
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-------~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda  253 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-------AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA  253 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccc-------cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence            588999999776666 66 8999999999874       23333447889999999999999999999999999999997


Q ss_pred             CCceEeEEe---ccc----------------------cCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          253 DNMELLYVL---HGQ----------------------EGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       253 ~~~~~~~~~---~~~----------------------~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      .+ +.+..-   ..+                      ...|++  |.--|..|++|+ +-+.|++++
T Consensus       254 s~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgt-d~eaIyl~~  316 (319)
T KOG4714|consen  254 ST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGT-DAEAIYLTR  316 (319)
T ss_pred             CC-ceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEecc-ccceEEEec
Confidence            63 211100   001                      112333  333588899998 888888875

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.16  E-value=3.4e-09  Score=81.00  Aligned_cols=159  Identities=12%  Similarity=0.107  Sum_probs=101.3

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      ....|...|..+-|+....++++.+.|..+.-.-.+.+.....                ..+      .+.   +....+
T Consensus       109 ~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~----------------Y~~------~~~---~t~~~~  163 (404)
T KOG1409|consen  109 DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGG----------------YNF------ETP---ASALQF  163 (404)
T ss_pred             hhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccc----------------eEe------ecc---CCCCce
Confidence            4457888888998988888888888886654333332211100                000      000   000000


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCC--eeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                        +-.+...|...|.|.+..+...  ..+.++..+.     ..+.++.|.|....+++| .|..+.+||+-..       
T Consensus       164 --d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~-----~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~-------  229 (404)
T KOG1409|consen  164 --DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHT-----GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR-------  229 (404)
T ss_pred             --eeEEEEecccccceEEEEEeecCCceEEEEcCcc-----cceEEEEEcCCCcEEEeccccCceEEEeccCC-------
Confidence              1114555666677766665433  3334444433     499999999998888877 9999999999643       


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~  253 (304)
                      ........+|...|..+..-+ --+.+.+++.||.|.+|+.+
T Consensus       230 ~g~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  230 KGTAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             cceeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEecc
Confidence            112222367777888888877 66789999999999999875

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=1.5e-08  Score=85.58  Aligned_cols=219  Identities=14%  Similarity=0.232  Sum_probs=148.0

Q ss_pred             ceeeeecCCCCceeEEEEcCCC------C------eEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeec
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDG------S------SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE  118 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~------~------~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (304)
                      +.+..+.-|...|+.+.|.|-.      .      .||++...|.|.+||........                 ....+
T Consensus        46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~-----------------~l~~~  108 (1062)
T KOG1912|consen   46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN-----------------WLSHS  108 (1062)
T ss_pred             hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh-----------------hhcCC
Confidence            3444778899999999998731      1      57778888999999987553322                 23345


Q ss_pred             CCeEEEEeecCccceeCCCc-cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECC-CCcEEE-EEcCCe
Q 022019          119 GESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIF-AGYNKS  195 (304)
Q Consensus       119 ~~~v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~-~~~d~~  195 (304)
                      ..++.+++|.+.    .++. ..|++-....++.+|+..+|+....+.....     ...|+.++| |.+.+. .|..|.
T Consensus       109 ~~~~qdl~W~~~----rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-----iLs~f~~DPfd~rh~~~l~s~g~  179 (1062)
T KOG1912|consen  109 NDSVQDLCWVPA----RDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-----ILSCFRVDPFDSRHFCVLGSKGF  179 (1062)
T ss_pred             Ccchhheeeeec----cCcchheeEEecCCcEEEEEEccCCceeeccccCCc-----ceeeeeeCCCCcceEEEEccCce
Confidence            578899999775    3344 4677777788999999999998776665443     566799999 556666 567888


Q ss_pred             EEEEEcCCCCcc---ceeeeeeecc-c-----------ccccc---------ceeEEEeecCCCcEEEEEecCCeEEEEe
Q 022019          196 VRVFDVHRPGRD---FEKYSTLKGN-K-----------EGQAG---------IMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (304)
Q Consensus       196 i~v~d~~~~~~~---~~~~~~~~~~-~-----------~~~~~---------~v~~~~~~p~~~~~l~~~~~dg~i~i~d  251 (304)
                      +.+.+.-....+   .+.++..... .           ..+..         ....++|+|.-.+ ++-......+.++|
T Consensus       180 vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn-~lfi~~prellv~d  258 (1062)
T KOG1912|consen  180 VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN-ILFITFPRELLVFD  258 (1062)
T ss_pred             EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc-eEEEEeccceEEEc
Confidence            877776432221   1111111000 0           00000         0224678884444 44455678899999


Q ss_pred             cCCceEeEEeccccCCeEEEEECCCC--cEEEEeeccCCeEEEEeccc
Q 022019          252 EDNMELLYVLHGQEGGVTHVQFSRDG--NYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       252 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~d~~i~vwd~~~  297 (304)
                      ++-..++....-..+.+.-+.|-|++  ..|++.- .||.+.+|-.+.
T Consensus       259 le~~~~l~vvpier~~akfv~vlP~~~rd~LfclH-~nG~ltirvrk~  305 (1062)
T KOG1912|consen  259 LEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLH-SNGRLTIRVRKE  305 (1062)
T ss_pred             chhhceeEEEEeccCCcceeEeccCCCcceEEEEe-cCCeEEEEEeec
Confidence            99888888887667777777887766  4689898 999999997655

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.12  E-value=2.8e-10  Score=60.55  Aligned_cols=38  Identities=32%  Similarity=0.553  Sum_probs=35.3

Q ss_pred             ceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEee
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFS   88 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd   88 (304)
                      +.++.+.+|.+.|++|+|+|++.+|++|+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            34568899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.12  E-value=4.3e-07  Score=70.40  Aligned_cols=190  Identities=16%  Similarity=0.274  Sum_probs=115.8

Q ss_pred             eeEEEEc-CCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEee-cCCeEEEEeecCccceeCCCccE
Q 022019           63 LKGIKWS-PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EGESVYDFCWFPHMSASDPTSCV  140 (304)
Q Consensus        63 V~~i~~s-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~  140 (304)
                      ..++.+. +++.+++ +..++ +.++|+.+++.........             .. ......++       +++++|++
T Consensus        42 ~~G~~~~~~~g~l~v-~~~~~-~~~~d~~~g~~~~~~~~~~-------------~~~~~~~~ND~-------~vd~~G~l   99 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYV-ADSGG-IAVVDPDTGKVTVLADLPD-------------GGVPFNRPNDV-------AVDPDGNL   99 (246)
T ss_dssp             EEEEEEECTTSEEEE-EETTC-EEEEETTTTEEEEEEEEET-------------TCSCTEEEEEE-------EE-TTS-E
T ss_pred             CceEEEEccCCEEEE-EEcCc-eEEEecCCCcEEEEeeccC-------------CCcccCCCceE-------EEcCCCCE
Confidence            6677777 5655544 44444 5555877653211110000             00 11233344       45889998


Q ss_pred             EEEEeCC--------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCcccee
Q 022019          141 FASTTRD--------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       141 l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~~~  210 (304)
                      .++....        |.|..++.. ++.........      ..+.|+|+|+++.|++ . ..+.|..|++.........
T Consensus       100 y~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~------~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~  172 (246)
T PF08450_consen  100 YVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG------FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN  172 (246)
T ss_dssp             EEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES------SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE
T ss_pred             EEEecCCCccccccccceEEECCC-CeEEEEecCcc------cccceEECCcchheeecccccceeEEEeccccccceee
Confidence            8776654        457777766 55443333222      5679999999998874 3 7888999999754432322


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEE-CCCCcEEEEee
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF-SRDGNYLYTGG  284 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~  284 (304)
                      ...+.. .....+..-.+++.. +++++++....+.|.++|.+ ++.+..+......+++++| .|+.+.|+..+
T Consensus       173 ~~~~~~-~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  173 RRVFID-FPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEEE--SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             eeeEEE-cCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            222211 122223477899999 77788877788999999987 8888888765568999999 57777766554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.10  E-value=5e-10  Score=59.56  Aligned_cols=39  Identities=28%  Similarity=0.610  Sum_probs=37.1

Q ss_pred             ceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       255 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      ++++.++.+|.+.|++++|+|++.+|++++ .|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~-~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGS-SDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeC-CCCEEEEEC
Confidence            468899999999999999999999999999 999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.10  E-value=2.7e-10  Score=83.60  Aligned_cols=147  Identities=15%  Similarity=0.229  Sum_probs=99.6

Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeee-EEeecccccccccceEEEEECCCCcEEEEEcC------CeEEEEEcCCCCccce
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLR-CTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN------KSVRVFDVHRPGRDFE  209 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d------~~i~v~d~~~~~~~~~  209 (304)
                      -++-+++++.||.+.+++.+..... ........     .-.+..+...++++.++.=      +..+.|+++..     
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~-----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~-----  169 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHS-----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPI-----  169 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccc-----cccccceeecccEEecCCcceEeeccceeeeccccc-----
Confidence            4556999999999999997652111 11111000     1123334445556654433      44566666542     


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce-EeEEeccccCCeEEEEECCC-CcEEEEeeccC
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGGVTHVQFSRD-GNYLYTGGRKD  287 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~d  287 (304)
                        ..+....... ..|++++-+|...+++++|+.||.+.+||.++.. +...+..|+.++..+-|+|. +..|++++ .|
T Consensus       170 --~t~~~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s-ed  245 (319)
T KOG4714|consen  170 --KTLIPSKKAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS-ED  245 (319)
T ss_pred             --cccccccccc-ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec-CC
Confidence              1111111222 2389999999778899999999999999999875 55667899999999999995 56899999 99


Q ss_pred             CeEEEEeccc
Q 022019          288 PYILCWDLRK  297 (304)
Q Consensus       288 ~~i~vwd~~~  297 (304)
                      |.+-.||..+
T Consensus       246 Gslw~wdas~  255 (319)
T KOG4714|consen  246 GSLWHWDAST  255 (319)
T ss_pred             CcEEEEcCCC
Confidence            9999999875

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.09  E-value=2.5e-09  Score=80.80  Aligned_cols=231  Identities=15%  Similarity=0.203  Sum_probs=132.5

Q ss_pred             CceeEEEEcCCCC--eEEEecCCCeEEEeeCCCCCCcccc--------ccc--------c-ccccCCccceEEEeecCCe
Q 022019           61 NFLKGIKWSPDGS--SFLTSSEDKTLRIFSLPENGISYDV--------NAC--------S-LAKDQDSYEASLVVTEGES  121 (304)
Q Consensus        61 ~~V~~i~~s~~~~--~l~s~~~dg~v~vwd~~~~~~~~~~--------~~~--------~-~~~~~~~~~~~~~~~~~~~  121 (304)
                      ..|..|.|..++.  .++..+.|++|++|.+.+..+....        ...        . .....-.....+.......
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r  165 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR  165 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence            4588899976543  5666788999999998765321000        000        0 0000000000111111111


Q ss_pred             EE--EEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCee---eEEeecccccccccceEEEEECCCCcEEE--EEcCC
Q 022019          122 VY--DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNK  194 (304)
Q Consensus       122 v~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~i~~~~~~~~l~--~~~d~  194 (304)
                      |+  ...++...++++.|.+.++++ .|-.|.+|++.-...   +..++.+....-...|++..|+|....++  ++..|
T Consensus       166 vyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG  244 (460)
T COG5170         166 VYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG  244 (460)
T ss_pred             eccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence            11  223333445567788878776 466799999874321   12223332222233678999999754444  66999


Q ss_pred             eEEEEEcCCCCccceeeeeee--------ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-eEeEEecccc
Q 022019          195 SVRVFDVHRPGRDFEKYSTLK--------GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQE  265 (304)
Q Consensus       195 ~i~v~d~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~  265 (304)
                      .|++-|+|...-+........        ..+.+....|..+.|+| +++++++-.. -+|+|||.+.. .|+.++.-|.
T Consensus       245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~  322 (460)
T COG5170         245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC  322 (460)
T ss_pred             cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence            999999985322111111111        11122334588899999 7777776554 68999999864 4777776553


Q ss_pred             ------------CCe---EEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          266 ------------GGV---THVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       266 ------------~~v---~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                                  ..|   ..+.||-|.+.+++|+ ..+..-+|-+
T Consensus       323 ~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs-y~NNfgiyp~  366 (460)
T COG5170         323 DLMDELNDVYENDAIFDKFEISFSGDDKHVLSGS-YSNNFGIYPT  366 (460)
T ss_pred             HHHHHHHhhhhccceeeeEEEEecCCcccccccc-cccceeeecc
Confidence                        223   3478898989999998 7776666653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.09  E-value=8.4e-08  Score=71.19  Aligned_cols=162  Identities=8%  Similarity=0.037  Sum_probs=110.9

Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCe-eeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccc
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~  208 (304)
                      .++++++++++++.++...|..|.+.... ..........   ...-.+..|+.....+|++ .||++.|||+|....+.
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t---~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT---SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc---CCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence            44669999999999999999999987532 2222121111   1244688999988888866 99999999999755433


Q ss_pred             eeeeeeeccccccccceeEEEeecCCC-cEEEEEecCCeEEEEecCCceEeEEec-------ccc-CCeEEEEECCCCcE
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHT-GMLAIGSYSQTSAIYREDNMELLYVLH-------GQE-GGVTHVQFSRDGNY  279 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~-~~v~~~~~~~~~~~  279 (304)
                      ..   .......|.+.++.+.|+|.+. .+|+..-.-+.+.+.|++++.....+.       .|. ..|....|+.++.-
T Consensus       240 ~~---~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s  316 (344)
T KOG4532|consen  240 AE---ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES  316 (344)
T ss_pred             hh---hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc
Confidence            22   2233366899999999998332 255555556789999999886444332       222 34888889888888


Q ss_pred             EEEeeccCCeEEEEeccccee
Q 022019          280 LYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       280 l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      +.+.. . -.+.-|++.+...
T Consensus       317 ~~v~~-e-~~~ae~ni~srsR  335 (344)
T KOG4532|consen  317 NDVKN-E-LQGAEYNILSRSR  335 (344)
T ss_pred             ccccc-c-hhhheeeccccce
Confidence            77776 3 3456666655443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.08  E-value=5.3e-09  Score=87.53  Aligned_cols=211  Identities=10%  Similarity=0.123  Sum_probs=137.9

Q ss_pred             eeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      .++.||+..|.-+.|+.+.+.|-|...+|.|.||-+-.+....+.               +.-...+.|.+++|      
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM---------------iNnRnKSvV~SmsW------  123 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM---------------INNRNKSVVVSMSW------  123 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH---------------hhCcCccEEEEEEE------
Confidence            378999999999999999999999999999999998766543222               22233467889999      


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeE-EeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCC-------
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP-------  204 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~-------  204 (304)
                       +.+|..+.....||.|.+=.++..+.-. .++..       ....+.|++|.+.+..+ .+|.+.+||....       
T Consensus       124 -n~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~-------~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~  195 (1189)
T KOG2041|consen  124 -NLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ-------LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEK  195 (1189)
T ss_pred             -cCCCcEEEEEEccCCEEEEeeccceecchhcchh-------eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhh
Confidence             6788899999999988877665433211 11111       23356677766655544 5666666664320       


Q ss_pred             C-------------ccceeeee-------------------------eec-------cccccccceeEEEeecCCCcEEE
Q 022019          205 G-------------RDFEKYST-------------------------LKG-------NKEGQAGIMSAIAFSPTHTGMLA  239 (304)
Q Consensus       205 ~-------------~~~~~~~~-------------------------~~~-------~~~~~~~~v~~~~~~p~~~~~l~  239 (304)
                      .             ..+..+..                         +..       ......-.+....|+| +|.+|+
T Consensus       196 ~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh-~G~vLA  274 (1189)
T KOG2041|consen  196 DCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNH-NGAVLA  274 (1189)
T ss_pred             ceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecC-CCcEEE
Confidence            0             00000000                         000       0001113377889999 777888


Q ss_pred             EEecC---------CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          240 IGSYS---------QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       240 ~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      +++.+         +.|.+|.. -|+.+.+++.....|++++|-..|-.++.+-  |+.|++=+++.
T Consensus       275 vcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av--dsfiyfanIRP  338 (1189)
T KOG2041|consen  275 VCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV--DSFIYFANIRP  338 (1189)
T ss_pred             EccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEe--cceEEEEeecc
Confidence            88754         25777764 5777888888888999999988777777664  77777666654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=8.2e-10  Score=84.34  Aligned_cols=148  Identities=13%  Similarity=0.216  Sum_probs=107.3

Q ss_pred             EEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccc
Q 022019          142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEG  220 (304)
Q Consensus       142 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  220 (304)
                      ++.+.+-.|-+-|+.+|... .+..      .+.|.++.|...++++..| .+|.|..+|+|...... .   ......-
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~s------ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~-~---~~a~rly  296 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQS------KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN-G---WCAQRLY  296 (425)
T ss_pred             ecccccceeEEEEeeccccc-cccc------chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC-C---cceEEEE
Confidence            45556677888888877432 2222      1278899999988999977 99999999998741110 0   0111134


Q ss_pred             cccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE---eEEeccccCCeEE--EEECCCCcEEEEeeccCCeEEEEec
Q 022019          221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL---LYVLHGQEGGVTH--VQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       221 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~--~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      |...|+++..-...+..|++.+.+|+|++||++.-++   +.++.||...-.-  +...+....++++| +|...++|.+
T Consensus       297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G-dDcytRiWsl  375 (425)
T KOG2695|consen  297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG-DDCYTRIWSL  375 (425)
T ss_pred             cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc-CeeEEEEEec
Confidence            6677888876654567889999999999999998776   8888888654333  33456777899999 9999999999


Q ss_pred             ccceee
Q 022019          296 RKAVQV  301 (304)
Q Consensus       296 ~~~~~~  301 (304)
                      +.|..+
T Consensus       376 ~~ghLl  381 (425)
T KOG2695|consen  376 DSGHLL  381 (425)
T ss_pred             ccCcee
Confidence            988544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.03  E-value=3.4e-07  Score=84.32  Aligned_cols=222  Identities=13%  Similarity=0.126  Sum_probs=127.4

Q ss_pred             eEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEE
Q 022019           64 KGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (304)
Q Consensus        64 ~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (304)
                      ..+++++ ++..+++-+.++.|++||...... ..+....    ....      ..+..-...-..|..++++++++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i-~~ig~~g----~~G~------~dG~~~~a~f~~P~GIavd~~gn~LY  639 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI-VQIGSTG----EEGL------RDGSFEDATFNRPQGLAYNAKKNLLY  639 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEE-EEEccCC----CcCC------CCCchhccccCCCcEEEEeCCCCEEE
Confidence            4688887 466777777888999999764321 1110000    0000      00000011122466677788877665


Q ss_pred             EEe-CCCCEEEEEcCCCeeeEEeeccccc------------ccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCcc
Q 022019          143 STT-RDHPIHLWDATTGLLRCTYRAYDAV------------DEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD  207 (304)
Q Consensus       143 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~------------~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~  207 (304)
                      ++. ..+.|+.+|+.++.. .++......            ........++++|++..++ +. .++.|++||...+.. 
T Consensus       640 VaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v-  717 (1057)
T PLN02919        640 VADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT-  717 (1057)
T ss_pred             EEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE-
Confidence            554 456799999877653 233211000            0011346899999554444 44 788999999865311 


Q ss_pred             ceeeee--eeccc------cccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEe-------------ccc--
Q 022019          208 FEKYST--LKGNK------EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-------------HGQ--  264 (304)
Q Consensus       208 ~~~~~~--~~~~~------~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------~~~--  264 (304)
                       ..+..  .....      .........++++|+++.++++-+.++.|++||+.++......             -..  
T Consensus       718 -~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG  796 (1057)
T PLN02919        718 -RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG  796 (1057)
T ss_pred             -EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence             00000  00000      0111235679999955557777778899999999865432111             000  


Q ss_pred             ------cCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          265 ------EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       265 ------~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                            -.....++++++|..+++-. .+++|++||..++..
T Consensus       797 ~g~~~~l~~P~Gvavd~dG~LYVADs-~N~rIrviD~~tg~v  837 (1057)
T PLN02919        797 VGSEVLLQHPLGVLCAKDGQIYVADS-YNHKIKKLDPATKRV  837 (1057)
T ss_pred             chhhhhccCCceeeEeCCCcEEEEEC-CCCEEEEEECCCCeE
Confidence                  01236889999998777777 899999999987653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.00  E-value=4e-07  Score=82.44  Aligned_cols=206  Identities=15%  Similarity=0.214  Sum_probs=129.2

Q ss_pred             CCCceeEEEEcCCCCeEEEecC---C---CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSE---D---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~---d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      +.+.-..|+|-.||.|||+.+.   .   ..+|||+-+ +.+.......                 .+--..++|     
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v-----------------~gLe~~l~W-----  264 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV-----------------DGLEGALSW-----  264 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC-----------------CCccCCccC-----
Confidence            5566778999999999998764   2   579999875 2221111000                 011223445     


Q ss_pred             eeCCCccEEEEEeC---CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccce
Q 022019          133 ASDPTSCVFASTTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       133 ~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~  209 (304)
                        .|.|+++|+...   ...|.+|. ++|..-..+..... .....|..+.|++++..||+-....|.+|-...-  -+-
T Consensus       265 --rPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~-~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NY--HWY  338 (928)
T PF04762_consen  265 --RPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFD-PEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNY--HWY  338 (928)
T ss_pred             --CCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCC-CCCceeeEEEECCCCCEEEEEecCCceEEEeeCC--EEE
Confidence              778999998865   34566666 44544444444321 1223789999999999999774555999988541  111


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC----Cc--------eEeEEec---------------
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED----NM--------ELLYVLH---------------  262 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~----~~--------~~~~~~~---------------  262 (304)
                      ..+.+.   ......+..+.|+|.....|.+.+.+|.+..++..    .+        ..+..+.               
T Consensus       339 LKqei~---~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP  415 (928)
T PF04762_consen  339 LKQEIR---FSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP  415 (928)
T ss_pred             EEEEEE---ccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC
Confidence            111111   11222345599999878888888887877666532    11        0111111               


Q ss_pred             --------cccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          263 --------GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       263 --------~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                              .-...|.+++|++++..+++-. .||.|.+|....
T Consensus       416 PPMs~~~l~~~~~v~~vaf~~~~~~~avl~-~d~~l~~~~~~~  457 (928)
T PF04762_consen  416 PPMSSYELELPSPVNDVAFSPSNSRFAVLT-SDGSLSIYEWDL  457 (928)
T ss_pred             chHhceEEcCCCCcEEEEEeCCCCeEEEEE-CCCCEEEEEecC
Confidence                    1245799999999998888888 899999998644

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.99  E-value=4.5e-06  Score=64.69  Aligned_cols=196  Identities=18%  Similarity=0.227  Sum_probs=119.6

Q ss_pred             EEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC-CCccEEE
Q 022019           65 GIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD-PTSCVFA  142 (304)
Q Consensus        65 ~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~  142 (304)
                      ++.|.+ ++.++++--..+.|..|+..++...                   ...... ...+.       +. +++.++ 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-------------------~~~~~~-~~G~~-------~~~~~g~l~-   55 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-------------------VIDLPG-PNGMA-------FDRPDGRLY-   55 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-------------------EEESSS-EEEEE-------EECTTSEEE-
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-------------------EEecCC-CceEE-------EEccCCEEE-
Confidence            578988 7777777778899999998755321                   111111 22332       24 455544 


Q ss_pred             EEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC--------CeEEEEEcCCCCccceeeee
Q 022019          143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN--------KSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       143 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d--------~~i~v~d~~~~~~~~~~~~~  213 (304)
                      .+...+ +.++|+.+++.................+.++++|+|++.++. ..        |.|..++...  . .   ..
T Consensus        56 v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~--~-~---~~  128 (246)
T PF08450_consen   56 VADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG--K-V---TV  128 (246)
T ss_dssp             EEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS--E-E---EE
T ss_pred             EEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC--e-E---EE
Confidence            444444 666699988766555542211123378899999999977754 22        4566676651  1 1   11


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC--c-----eEeEEeccccCCeEEEEECCCCcEEEEeecc
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--M-----ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK  286 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  286 (304)
                      ..    ........++|+|++..++++-+..+.|..|++..  .     +....+....+..-.+++..+|+..++.. .
T Consensus       129 ~~----~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~  203 (246)
T PF08450_consen  129 VA----DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-G  203 (246)
T ss_dssp             EE----EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-T
T ss_pred             Ee----cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-C
Confidence            11    11233679999995555666778889999999853  2     12223333233478899999998777666 7


Q ss_pred             CCeEEEEecccceee
Q 022019          287 DPYILCWDLRKAVQV  301 (304)
Q Consensus       287 d~~i~vwd~~~~~~~  301 (304)
                      .+.|.+++.+ |+.+
T Consensus       204 ~~~I~~~~p~-G~~~  217 (246)
T PF08450_consen  204 GGRIVVFDPD-GKLL  217 (246)
T ss_dssp             TTEEEEEETT-SCEE
T ss_pred             CCEEEEECCC-ccEE
Confidence            8999999987 6543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.98  E-value=5.7e-09  Score=95.37  Aligned_cols=159  Identities=14%  Similarity=0.254  Sum_probs=120.0

Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCC
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK  194 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~  194 (304)
                      .++-..|..+.-+       |...+.++|+.||.+++|....++.+..+...+.    ..|+.+.|+.+|+.+..+ .||
T Consensus      2205 k~~v~~v~r~~sH-------p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~----s~vtr~~f~~qGnk~~i~d~dg 2273 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSH-------PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN----SRVTRSRFNHQGNKFGIVDGDG 2273 (2439)
T ss_pred             ecccCceeeecCC-------CCCceEEecCCCceEEEEeccCCCeEEEeeccCc----chhhhhhhcccCCceeeeccCC
Confidence            3334556666554       4455899999999999999998888877765443    388999999999999866 999


Q ss_pred             eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEe---cCCeEEEEecCCc---eEeEEeccccCCe
Q 022019          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNM---ELLYVLHGQEGGV  268 (304)
Q Consensus       195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~i~d~~~~---~~~~~~~~~~~~v  268 (304)
                      .+.+|.+..  +.+   .    ....|......+.|-.   ..+++++   .++.+.+||.--.   .++.  ..|.+.+
T Consensus      2274 ~l~l~q~~p--k~~---~----s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~ga 2339 (2439)
T KOG1064|consen 2274 DLSLWQASP--KPY---T----SWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGA 2339 (2439)
T ss_pred             ceeecccCC--cce---e----ccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCc
Confidence            999999862  111   1    1145666677777764   3566654   4678999996422   2343  6799999


Q ss_pred             EEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          269 THVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       269 ~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      +++++-|....|++|| .+|.|++||++..+.
T Consensus      2340 T~l~~~P~~qllisgg-r~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2340 TVLAYAPKHQLLISGG-RKGEVCLFDIRQRQL 2370 (2439)
T ss_pred             eEEEEcCcceEEEecC-CcCcEEEeehHHHHH
Confidence            9999999999999999 999999999987644

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=1.9e-09  Score=85.90  Aligned_cols=165  Identities=16%  Similarity=0.217  Sum_probs=122.1

Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC--CcEEE-EEc
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIF-AGY  192 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~-~~~  192 (304)
                      ..|.+.|..+.|       +..|..+++|+.|..|.+||+..++....+..    +|...|....|-|.  .+.++ ++.
T Consensus       139 ~~H~GcVntV~F-------N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S----GH~~NvfQaKFiP~s~d~ti~~~s~  207 (559)
T KOG1334|consen  139 NKHKGCVNTVHF-------NQRGDVLASGSDDLQVVVWDWVSGSPKLSFES----GHCNNVFQAKFIPFSGDRTIVTSSR  207 (559)
T ss_pred             cCCCCccceeee-------cccCceeeccCccceEEeehhhccCccccccc----ccccchhhhhccCCCCCcCceeccc
Confidence            345556666655       77899999999999999999998877665543    23335666667663  35555 569


Q ss_pred             CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec---cccC---
Q 022019          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH---GQEG---  266 (304)
Q Consensus       193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~---  266 (304)
                      ||.+++=.+...+....     ......|.++|..++.-|+...-|.+++.|+.+.-+|++...+...+.   .+..   
T Consensus       208 dgqvr~s~i~~t~~~e~-----t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v  282 (559)
T KOG1334|consen  208 DGQVRVSEILETGYVEN-----TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV  282 (559)
T ss_pred             cCceeeeeeccccceec-----ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Confidence            99999987765332111     122256888899999999888899999999999999999876544443   3333   


Q ss_pred             CeEEEEECCCCc-EEEEeeccCCeEEEEeccc
Q 022019          267 GVTHVQFSRDGN-YLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       267 ~v~~~~~~~~~~-~l~~~~~~d~~i~vwd~~~  297 (304)
                      ....++..|... .+++++ .|..+++||.+.
T Consensus       283 ~L~~Ia~~P~nt~~faVgG-~dqf~RvYD~R~  313 (559)
T KOG1334|consen  283 GLYTIAVDPRNTNEFAVGG-SDQFARVYDQRR  313 (559)
T ss_pred             eeeeEecCCCCccccccCC-hhhhhhhhcccc
Confidence            578899999877 677788 999999999875

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=9.4e-08  Score=77.85  Aligned_cols=114  Identities=18%  Similarity=0.289  Sum_probs=77.0

Q ss_pred             ceEEEEECCCCcEEE--EE--cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEE---ecCCeE
Q 022019          175 AAFSVAFNPTGTKIF--AG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG---SYSQTS  247 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~--~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~---~~dg~i  247 (304)
                      .|...+|.|.|..++  .|  ...++.+|.+++.....+.+..+.      ....+.+-|+| .|++++++   |..|.+
T Consensus       447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d------k~~~N~vfwsP-kG~fvvva~l~s~~g~l  519 (698)
T KOG2314|consen  447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD------KKFANTVFWSP-KGRFVVVAALVSRRGDL  519 (698)
T ss_pred             heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc------ccccceEEEcC-CCcEEEEEEecccccce
Confidence            788999999998887  34  457899999986444444333332      13367899999 66666655   347889


Q ss_pred             EEEecCCceEeEEec-cccCCeEEEEECCCCcEEEEeec-----cCCeEEEEecc
Q 022019          248 AIYREDNMELLYVLH-GQEGGVTHVQFSRDGNYLYTGGR-----KDPYILCWDLR  296 (304)
Q Consensus       248 ~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----~d~~i~vwd~~  296 (304)
                      .++|+....+..+-. .| ...+.+.|.|.|+|++++++     .|.--++|+++
T Consensus       520 ~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  520 EFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             EEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence            999987533322222 23 34688999999999999882     23345666654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.96  E-value=5e-07  Score=72.48  Aligned_cols=146  Identities=11%  Similarity=0.075  Sum_probs=107.2

Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCC-eEEEEEcCCCCccceeeeee
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK-SVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~-~i~v~d~~~~~~~~~~~~~~  214 (304)
                      +|.+++..|. |...+.+...+-.++.-       +...|.-..+..+++-++.| .|| .+-|||.+....     ..+
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~-------~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-----kr~  397 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQVG-------KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-----KRI  397 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEEcC-------CCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-----EEe
Confidence            6778888875 56778776655443321       11256667777777777766 777 899999986321     111


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCC----eE
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP----YI  290 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~----~i  290 (304)
                          ...-+.|.++..+| +++.++++.....|.++|+.++.+...=+...+-|+.+.|||+++++|-+- -+|    .|
T Consensus       398 ----e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf-P~gy~tq~I  471 (668)
T COG4946         398 ----EKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF-PEGYYTQSI  471 (668)
T ss_pred             ----eCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec-CcceeeeeE
Confidence                33456699999999 788899999999999999999987655455567899999999999999776 554    69


Q ss_pred             EEEecccceee
Q 022019          291 LCWDLRKAVQV  301 (304)
Q Consensus       291 ~vwd~~~~~~~  301 (304)
                      +++|+..++..
T Consensus       472 klydm~~~Kiy  482 (668)
T COG4946         472 KLYDMDGGKIY  482 (668)
T ss_pred             EEEecCCCeEE
Confidence            99999887643

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.96  E-value=1.7e-06  Score=69.34  Aligned_cols=192  Identities=11%  Similarity=0.117  Sum_probs=117.1

Q ss_pred             CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeC----------CCCEE
Q 022019           82 KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR----------DHPIH  151 (304)
Q Consensus        82 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~  151 (304)
                      ++|.+.|..+.+....                         ....+.|+.. ++||++.+.++..          +..|.
T Consensus        27 ~~v~ViD~~~~~v~g~-------------------------i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~   80 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGM-------------------------TDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVE   80 (352)
T ss_pred             ceEEEEECCCCEEEEE-------------------------EEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEE
Confidence            7899999886543211                         2233455554 6999988777755          78899


Q ss_pred             EEEcCCCeeeEEeecccccc--cccceEEEEECCCCcEEEEE--c-CCeEEEEEcCCCCccceeeeeee-----------
Q 022019          152 LWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIFAG--Y-NKSVRVFDVHRPGRDFEKYSTLK-----------  215 (304)
Q Consensus       152 i~d~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~--~-d~~i~v~d~~~~~~~~~~~~~~~-----------  215 (304)
                      +||+.+.+....+.......  .......++++|||+++++.  . +..|.+.|+.+... ...+....           
T Consensus        81 v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-v~ei~vp~~~~vy~t~e~~  159 (352)
T TIGR02658        81 VIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-VRMMDVPDCYHIFPTANDT  159 (352)
T ss_pred             EEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-EEEEeCCCCcEEEEecCCc
Confidence            99999999988887643211  11234578999999999965  3 78999999976421 11000000           


Q ss_pred             -------ccc-------cccccceeEE--------------EeecCCCcEEEEEecCCeEEEEecCCc-----eEeEEec
Q 022019          216 -------GNK-------EGQAGIMSAI--------------AFSPTHTGMLAIGSYSQTSAIYREDNM-----ELLYVLH  262 (304)
Q Consensus       216 -------~~~-------~~~~~~v~~~--------------~~~p~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~  262 (304)
                             ...       .+. ......              .|.+.++.++++..+ |.|.+.|+...     ..+..+.
T Consensus       160 ~~~~~~Dg~~~~v~~d~~g~-~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~  237 (352)
T TIGR02658       160 FFMHCRDGSLAKVGYGTKGN-PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFT  237 (352)
T ss_pred             cEEEeecCceEEEEecCCCc-eEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecc
Confidence                   000       000 001111              233424556665555 99999996432     3333322


Q ss_pred             c-------ccCCeEEEEECCCCcEEEEee-c--------cCCeEEEEecccceeee
Q 022019          263 G-------QEGGVTHVQFSRDGNYLYTGG-R--------KDPYILCWDLRKAVQVV  302 (304)
Q Consensus       263 ~-------~~~~v~~~~~~~~~~~l~~~~-~--------~d~~i~vwd~~~~~~~~  302 (304)
                      .       ..+.+.-++++|+|+.++... .        ..+.|.++|..+++.+-
T Consensus       238 ~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~  293 (352)
T TIGR02658       238 EAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR  293 (352)
T ss_pred             ccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
Confidence            1       123455599999999988742 0        22589999999987653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.95  E-value=3.9e-06  Score=64.00  Aligned_cols=212  Identities=14%  Similarity=0.151  Sum_probs=110.4

Q ss_pred             eecCCCCceeEEEEcCCCC-eEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           55 TSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      .+.+-.+.+.+|+|+|+.. ++++....+.|...+.. ++....                +.+..-...-.+++      
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~----------------i~l~g~~D~EgI~y------   72 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRR----------------IPLDGFGDYEGITY------   72 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEE----------------EE-SS-SSEEEEEE------
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEE----------------EeCCCCCCceeEEE------
Confidence            4445566699999999755 66666777888777764 322111                22222233444444      


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCe------eeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCC--C
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGL------LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR--P  204 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~--~  204 (304)
                       ..++.++++--.++.+.++++....      ....+...........+.+++|+|.++.|++. ...-..+|.++.  .
T Consensus        73 -~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~  151 (248)
T PF06977_consen   73 -LGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG  151 (248)
T ss_dssp             --STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-
T ss_pred             -ECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC
Confidence             4466666655568899999884321      11222221111222368899999987777755 555566776654  1


Q ss_pred             Cccceeeeeee-ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc---------CCeEEEEEC
Q 022019          205 GRDFEKYSTLK-GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---------GGVTHVQFS  274 (304)
Q Consensus       205 ~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~~  274 (304)
                      ........... .........+.++.++|..+++++....+..|..+| ..++++..+.-..         ...-.|+|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d  230 (248)
T PF06977_consen  152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD  230 (248)
T ss_dssp             SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred             ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC
Confidence            11111111100 001223334789999998888999999999999999 5777766554211         246789999


Q ss_pred             CCCcEEEEeeccCCeEEEE
Q 022019          275 RDGNYLYTGGRKDPYILCW  293 (304)
Q Consensus       275 ~~~~~l~~~~~~d~~i~vw  293 (304)
                      ++|+ |+..+ .-+..++|
T Consensus       231 ~~G~-LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  231 PDGN-LYIVS-EPNLFYRF  247 (248)
T ss_dssp             TT---EEEEE-TTTEEEEE
T ss_pred             CCCC-EEEEc-CCceEEEe
Confidence            9985 66666 66655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=4.8e-08  Score=82.80  Aligned_cols=185  Identities=12%  Similarity=0.097  Sum_probs=127.7

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      .++.++|++++  +++|+-|+.+|.|++++......                   ..+.|...             +-+|
T Consensus        38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~-------------------~~~~~s~~-------------~~~G   83 (846)
T KOG2066|consen   38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNPK-------------------TNFDHSSS-------------ILEG   83 (846)
T ss_pred             hhhHHHHHHhh--cceeeeccccceEEEEecCCccc-------------------cccccccc-------------ccCC
Confidence            35668888886  67899999999999998763310                   11111111             3478


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC-----CcEEEEE-cCCeEEEEEcCCCCccceeee
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-----GTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~l~~~-~d~~i~v~d~~~~~~~~~~~~  212 (304)
                      .++++|+.||+|.|-.+-+.+...++....      ++.+++++|+     .+.+++| ..| +.++.-+--+.....  
T Consensus        84 ey~asCS~DGkv~I~sl~~~~~~~~~df~r------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--  154 (846)
T KOG2066|consen   84 EYVASCSDDGKVVIGSLFTDDEITQYDFKR------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--  154 (846)
T ss_pred             ceEEEecCCCcEEEeeccCCccceeEecCC------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--
Confidence            999999999999999998888777777655      8899999998     3455555 555 777765432221111  


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC------CeEEEEECCCCcEEEEeecc
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG------GVTHVQFSRDGNYLYTGGRK  286 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~~~  286 (304)
                          ......++|.++.|..   .++|-++.+| |++||+...+.+..+.....      .-..+.|.++.+ |+.|-  
T Consensus       155 ----~l~~~eG~I~~i~W~g---~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW--  223 (846)
T KOG2066|consen  155 ----VLSEGEGPIHSIKWRG---NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW--  223 (846)
T ss_pred             ----eeecCccceEEEEecC---cEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEec--
Confidence                1244567899999964   4788887666 99999998888777763333      235578876655 55453  


Q ss_pred             CCeEEEEeccc
Q 022019          287 DPYILCWDLRK  297 (304)
Q Consensus       287 d~~i~vwd~~~  297 (304)
                      ..+|++..++.
T Consensus       224 ~d~v~i~~I~~  234 (846)
T KOG2066|consen  224 GDSVKICSIKK  234 (846)
T ss_pred             CCeEEEEEEec
Confidence            45788888873

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=6.3e-09  Score=84.66  Aligned_cols=152  Identities=18%  Similarity=0.244  Sum_probs=104.2

Q ss_pred             CccEEEEEeCCCCEEEEEcCCC-------eeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccce
Q 022019          137 TSCVFASTTRDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~  209 (304)
                      +.+.+++++.|++|++|.++..       .+..++..|.     .+|.++.|-.+.++++ +.||.|.+||.-.+ +...
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk-----k~i~~igfL~~lr~i~-ScD~giHlWDPFig-r~La  818 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK-----KPIHDIGFLADLRSIA-SCDGGIHLWDPFIG-RLLA  818 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccCccccceeeeEhhhcc-----Ccccceeeeeccceee-eccCcceeeccccc-chhH
Confidence            5567999999999999999742       1333344443     3888999988777665 45889999997542 1111


Q ss_pred             eeeeeeccccccccceeEEEeecC-CCcEEEE-EecCCeEEEEecCCceEeEEec-----cccCCeEEEEECCCCcEEEE
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPT-HTGMLAI-GSYSQTSAIYREDNMELLYVLH-----GQEGGVTHVQFSRDGNYLYT  282 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~  282 (304)
                        +.......+   .+..+..-|+ +..++.+ ++...+|+++|.+.++-...++     +....+.+++..|.|+++++
T Consensus       819 --q~~dapk~~---a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa  893 (1034)
T KOG4190|consen  819 --QMEDAPKEG---AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAA  893 (1034)
T ss_pred             --hhhcCcccC---CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhH
Confidence              011111122   2233333332 3334444 4778999999999987666665     33456899999999999999


Q ss_pred             eeccCCeEEEEecccceee
Q 022019          283 GGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       283 ~~~~d~~i~vwd~~~~~~~  301 (304)
                      +- .+|+|.+.|.++|+.+
T Consensus       894 ~L-SnGci~~LDaR~G~vI  911 (1034)
T KOG4190|consen  894 AL-SNGCIAILDARNGKVI  911 (1034)
T ss_pred             Hh-cCCcEEEEecCCCcee
Confidence            98 9999999999999754

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.93  E-value=9.3e-07  Score=68.39  Aligned_cols=194  Identities=15%  Similarity=0.129  Sum_probs=117.2

Q ss_pred             EEEcCCCCeEEEe-----cCCCeEEEeeCCCC-CCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           66 IKWSPDGSSFLTS-----SEDKTLRIFSLPEN-GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        66 i~~s~~~~~l~s~-----~~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      -.||+||++|++.     +..|.|-|||.... ....+                        ....-.-|+.+.+.|||+
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E------------------------~~s~GIGPHel~l~pDG~  111 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGE------------------------FPSHGIGPHELLLMPDGE  111 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeE------------------------ecCCCcChhhEEEcCCCC
Confidence            6899999999986     34689999999722 11111                        111112233344466776


Q ss_pred             EEEEEeC------------------CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCC------
Q 022019          140 VFASTTR------------------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK------  194 (304)
Q Consensus       140 ~l~~~~~------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~------  194 (304)
                      .|+++..                  +-++.+.|..+|+.+........ .+...+..++++++|..+++. ..|      
T Consensus       112 tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~-~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~  190 (305)
T PF07433_consen  112 TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD-LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAP  190 (305)
T ss_pred             EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc-ccccceeeEEecCCCcEEEEEecCCCCCccC
Confidence            6666522                  33466667778887766554322 223378899999999888754 222      


Q ss_pred             -eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEE
Q 022019          195 -SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF  273 (304)
Q Consensus       195 -~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  273 (304)
                       -+.+++...   .+..+.............+-+|++++++..+.+++=.-|.+.+||..+++.+....-  ..+..++-
T Consensus       191 PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~  265 (305)
T PF07433_consen  191 PLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAP  265 (305)
T ss_pred             CeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--Cceeeeee
Confidence             133443322   122222211122334567899999995444555555678899999999998876653  34677777


Q ss_pred             CCCCcEEEEeeccCCeEEE
Q 022019          274 SRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       274 ~~~~~~l~~~~~~d~~i~v  292 (304)
                      .+++ ++++.+  .|.+..
T Consensus       266 ~~~~-f~~ssG--~G~~~~  281 (305)
T PF07433_consen  266 TDDG-FLVSSG--QGQLIR  281 (305)
T ss_pred             cCCc-eEEeCC--CccEEE
Confidence            7777 677666  454433

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.92  E-value=6.2e-08  Score=83.33  Aligned_cols=141  Identities=18%  Similarity=0.264  Sum_probs=105.7

Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEc---------CCeEEEEEcCCCCc
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY---------NKSVRVFDVHRPGR  206 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~---------d~~i~v~d~~~~~~  206 (304)
                      +++.+++|...|+|.+-|.++-+.+.++..|..     .+..  |+-.|+.|+ +|.         |.-|+|||+|+-. 
T Consensus       186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~-----siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr-  257 (1118)
T KOG1275|consen  186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG-----SISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR-  257 (1118)
T ss_pred             cCcEEEeecccceEEeecCCcCceeeeeecccc-----ceee--eeccCCeEEEeecccccccccccchhhhhhhhhhh-
Confidence            778999999999999999999999999998875     5544  445677877 553         4558999998731 


Q ss_pred             cceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC---Cc-eEeEEeccccCCeEEEEECCCCcEEEE
Q 022019          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---NM-ELLYVLHGQEGGVTHVQFSRDGNYLYT  282 (304)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~---~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~  282 (304)
                      .+.   .+    .-+.+ ..-+.|+|.-...+++++..|...+.|..   +. .-+..+......+..++++++|..++.
T Consensus       258 al~---PI----~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alaf  329 (1118)
T KOG1275|consen  258 ALS---PI----QFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAF  329 (1118)
T ss_pred             ccC---Cc----ccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEE
Confidence            111   11    11111 24578999778889999999999999943   32 223344444556999999999999999


Q ss_pred             eeccCCeEEEEe
Q 022019          283 GGRKDPYILCWD  294 (304)
Q Consensus       283 ~~~~d~~i~vwd  294 (304)
                      |. .+|.|.+|.
T Consensus       330 gd-~~g~v~~wa  340 (1118)
T KOG1275|consen  330 GD-HEGHVNLWA  340 (1118)
T ss_pred             ec-ccCcEeeec
Confidence            99 999999997

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.92  E-value=7.1e-07  Score=72.11  Aligned_cols=131  Identities=21%  Similarity=0.293  Sum_probs=88.9

Q ss_pred             CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE--EE-cCCeEEEEEcCCCCccceeeeeeeccccccccc
Q 022019          148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI  224 (304)
Q Consensus       148 g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~--~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (304)
                      ..++|+++......... ...     ++|..+.|.|.++.++  .| ....+.++|++..         +..  ......
T Consensus       255 snLyl~~~~e~~i~V~~-~~~-----~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---------l~~--~~Pe~~  317 (561)
T COG5354         255 SNLYLLRITERSIPVEK-DLK-----DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---------LRF--YFPEQK  317 (561)
T ss_pred             ceEEEEeecccccceec-ccc-----ccceeeeecccCCceeEEecccccceeecccccc---------eEE--ecCCcc
Confidence            45788887744333222 212     2899999999988777  45 8899999999863         110  111222


Q ss_pred             eeEEEeecCCCcEEEEEecC---CeEEEEecCCceE-eEEeccccCCeEEEEECCCCcEEEEee-----ccCCeEEEEec
Q 022019          225 MSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMEL-LYVLHGQEGGVTHVQFSRDGNYLYTGG-----RKDPYILCWDL  295 (304)
Q Consensus       225 v~~~~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~d~~i~vwd~  295 (304)
                      =..+.|+| .+++++.++-|   |.|-+||...... +..+.+.  ..+-+.|+|||.++.+..     +.|..|.|||+
T Consensus       318 rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v  394 (561)
T COG5354         318 RNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV  394 (561)
T ss_pred             cccccccC-cccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence            34678999 66677776654   6799999876544 4366643  346678999999987764     35788999998


Q ss_pred             ccc
Q 022019          296 RKA  298 (304)
Q Consensus       296 ~~~  298 (304)
                      ...
T Consensus       395 ~g~  397 (561)
T COG5354         395 YGA  397 (561)
T ss_pred             cCc
Confidence            654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.92  E-value=9.2e-07  Score=80.17  Aligned_cols=201  Identities=13%  Similarity=0.205  Sum_probs=130.7

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEe----eCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIF----SLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      ..+.|.++.|-++...++.+..+|.|.+.    +..+..                  ..+...-...|.+++|       
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~------------------~E~VG~vd~GI~a~~W-------  128 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE------------------IEIVGSVDSGILAASW-------  128 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce------------------eEEEEEEcCcEEEEEE-------
Confidence            45789999999999988889999999998    333221                  1133334467888888       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeE------------------------Eeeccccc----------------c---
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRC------------------------TYRAYDAV----------------D---  171 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------------------~~~~~~~~----------------~---  171 (304)
                      |||+.+|+.+..++++.+.+- +..++.                        .+.+..+.                +   
T Consensus       129 SPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s  207 (928)
T PF04762_consen  129 SPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS  207 (928)
T ss_pred             CCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc
Confidence            889999999999998877643 111111                        11110000                0   


Q ss_pred             cccceEEEEECCCCcEEEEE-c---C---CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec-
Q 022019          172 EITAAFSVAFNPTGTKIFAG-Y---N---KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-  243 (304)
Q Consensus       172 ~~~~v~~i~~~~~~~~l~~~-~---d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-  243 (304)
                      ....-..|+|-.||.++|++ .   .   +.++||+-+.         .+....+.-.+--.+++|.| .|.+||+... 
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG---------~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~  277 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG---------ELQSTSEPVDGLEGALSWRP-SGNLIASSQRL  277 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc---------eEEeccccCCCccCCccCCC-CCCEEEEEEEc
Confidence            11134578999999999953 2   2   5789998642         11111122222345789999 7778887765 


Q ss_pred             --CCeEEEEecCCceEeEEec----cccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          244 --SQTSAIYREDNMELLYVLH----GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       244 --dg~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                        ...|.+|. ++|-.-..|.    .....|..+.|++|+..||..- .|. |.+|-..+-
T Consensus       278 ~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-~~~-vqLWt~~NY  335 (928)
T PF04762_consen  278 PDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-EDR-VQLWTRSNY  335 (928)
T ss_pred             CCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-cCC-ceEEEeeCC
Confidence              34577777 4554333332    3456799999999999999876 554 999987764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=2.1e-07  Score=75.88  Aligned_cols=136  Identities=18%  Similarity=0.286  Sum_probs=90.4

Q ss_pred             eEEEeecCCeEEEEeecCccceeCCCccEEEEE--eCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE
Q 022019          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFAST--TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (304)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  189 (304)
                      ..+.+...++|+++.|       +|+++-|+++  -.--.+.|||++ +.++..+..  +     +=+++-|+|.|++|+
T Consensus       263 ~~V~L~k~GPVhdv~W-------~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e--g-----pRN~~~fnp~g~ii~  327 (566)
T KOG2315|consen  263 VSVPLLKEGPVHDVTW-------SPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE--G-----PRNTAFFNPHGNIIL  327 (566)
T ss_pred             EEEecCCCCCceEEEE-------CCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC--C-----CccceEECCCCCEEE
Confidence            3455556789999999       5677666555  345679999986 445444432  2     446899999999999


Q ss_pred             -EE---cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec------CCeEEEEecCCceEeE
Q 022019          190 -AG---YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLY  259 (304)
Q Consensus       190 -~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~  259 (304)
                       +|   .-|.|-|||+...    +.+..+    .  ...-+-+.|+| +|.++++++.      |+.++||+. +|..+.
T Consensus       328 lAGFGNL~G~mEvwDv~n~----K~i~~~----~--a~~tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~  395 (566)
T KOG2315|consen  328 LAGFGNLPGDMEVWDVPNR----KLIAKF----K--AANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHY-TGSLLH  395 (566)
T ss_pred             EeecCCCCCceEEEeccch----hhcccc----c--cCCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEe-cCceee
Confidence             66   4589999999762    111211    1  22256789999 6778887764      688999998 555554


Q ss_pred             EeccccCCeEEEEECC
Q 022019          260 VLHGQEGGVTHVQFSR  275 (304)
Q Consensus       260 ~~~~~~~~v~~~~~~~  275 (304)
                      .-.- ...+..+.|-|
T Consensus       396 ~~~f-~sEL~qv~W~P  410 (566)
T KOG2315|consen  396 EKMF-KSELLQVEWRP  410 (566)
T ss_pred             hhhh-hHhHhheeeee
Confidence            3321 11567777765

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.89  E-value=6.4e-06  Score=63.88  Aligned_cols=205  Identities=13%  Similarity=0.157  Sum_probs=124.7

Q ss_pred             eeEEEEcC-CCCeEEEecCCCe-EEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccE
Q 022019           63 LKGIKWSP-DGSSFLTSSEDKT-LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (304)
Q Consensus        63 V~~i~~s~-~~~~l~s~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (304)
                      ...++.+| .+..++.+-.-|+ ..+||..++.....+...                .+...+.      ...||+||++
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~----------------~gRHFyG------Hg~fs~dG~~   64 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP----------------PGRHFYG------HGVFSPDGRL   64 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC----------------CCCEEec------CEEEcCCCCE
Confidence            34677888 5556666666554 678888776543222111                1111111      2356999999


Q ss_pred             EEEEeC-----CCCEEEEEcC-CCeeeEEeecccccccccceEEEEECCCCcEEEEEcCC--------e-----------
Q 022019          141 FASTTR-----DHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK--------S-----------  195 (304)
Q Consensus       141 l~~~~~-----dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~--------~-----------  195 (304)
                      |++.-.     .|.|-|||.. +-+.+..+..+..     ....+.+.|||+.|+++..|        .           
T Consensus        65 LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GI-----GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ps  139 (305)
T PF07433_consen   65 LYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGI-----GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPS  139 (305)
T ss_pred             EEEeccccCCCcEEEEEEECcCCcEEEeEecCCCc-----ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence            998744     4789999998 5556666766654     34468899999777754322        2           


Q ss_pred             EEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCe-------EEEEecCCceEeEEec------
Q 022019          196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-------SAIYREDNMELLYVLH------  262 (304)
Q Consensus       196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~------  262 (304)
                      +.+.|..++    ..+.+.......|.-.+..+++++ ++..++..-..|.       |.+++...  .+..+.      
T Consensus       140 L~~ld~~sG----~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~  212 (305)
T PF07433_consen  140 LVYLDARSG----ALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQW  212 (305)
T ss_pred             eEEEecCCC----ceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHH
Confidence            333333332    111111111133556689999999 5655555444432       44454332  222222      


Q ss_pred             -cccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          263 -GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       263 -~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                       .-.+.+-+|+++++|.++++++-..+.+.+||..+++.+
T Consensus       213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~  252 (305)
T PF07433_consen  213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL  252 (305)
T ss_pred             HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence             234679999999999988766657889999999998765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=9e-07  Score=75.97  Aligned_cols=201  Identities=14%  Similarity=0.141  Sum_probs=122.1

Q ss_pred             EEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeC
Q 022019           67 KWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR  146 (304)
Q Consensus        67 ~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  146 (304)
                      +|++.+..++.|+.+|.|.+.+-.-.. ...+                 ......+...-|      ...+..+|++.+.
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~~-~~~f-----------------qa~~~siv~~L~------~~~~~~~L~sv~E   85 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQL-IRGF-----------------QAYEQSIVQFLY------ILNKQNFLFSVGE   85 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccccee-eehh-----------------eecchhhhhHhh------cccCceEEEEEee
Confidence            467788899999999999888754110 0000                 001111111111      1123356777776


Q ss_pred             CCC-----EEEEEcCCC------eeeEEee--cccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeee
Q 022019          147 DHP-----IHLWDATTG------LLRCTYR--AYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       147 dg~-----i~i~d~~~~------~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~  212 (304)
                      |+.     +++|+++.-      ++.....  .+.......++.+++.+.+-+.+++| .+|.|..+.-.-....... .
T Consensus        86 d~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr-~  164 (933)
T KOG2114|consen   86 DEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSR-Q  164 (933)
T ss_pred             cCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccc-e
Confidence            654     899999743      1221111  11222245588899999999999999 9999999854321111111 0


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE-eEEeccccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                      .   .......+|+.+.+..++...+++++ -..|.+|.+....+ ...+..|..++.|..+++....+++++  +..|.
T Consensus       165 ~---~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~  238 (933)
T KOG2114|consen  165 D---YSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLY  238 (933)
T ss_pred             e---eeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEE
Confidence            1   11234567999999885554445444 35799999975443 444777888999999987666466665  56789


Q ss_pred             EEecccc
Q 022019          292 CWDLRKA  298 (304)
Q Consensus       292 vwd~~~~  298 (304)
                      +|+....
T Consensus       239 fY~sd~~  245 (933)
T KOG2114|consen  239 FYDSDGR  245 (933)
T ss_pred             EEcCCCc
Confidence            9988653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.88  E-value=1.8e-08  Score=77.25  Aligned_cols=136  Identities=13%  Similarity=0.151  Sum_probs=89.4

Q ss_pred             CeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCC-----eeeEEeecccccccccceEEEEECC-CCcEEEE-Ec
Q 022019          120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-----LLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFA-GY  192 (304)
Q Consensus       120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~-~~  192 (304)
                      ..|.++.|       ...+++++.|+..|.|..+|++.+     .+...+ .     |.+.|+++..-. ++++|.+ +.
T Consensus       253 sDVfAlQf-------~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-y-----h~Ssvtslq~Lq~s~q~LmaS~M  319 (425)
T KOG2695|consen  253 SDVFALQF-------AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-Y-----HDSSVTSLQILQFSQQKLMASDM  319 (425)
T ss_pred             hhHHHHHh-------cccCCeeEecccCCcEEEEEeeecccCCCcceEEE-E-----cCcchhhhhhhccccceEeeccC
Confidence            45656555       345678999999999999999865     222222 2     223777877665 5667775 49


Q ss_pred             CCeEEEEEcCCCCccceeeeeeeccccccccce--eEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc----C
Q 022019          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIM--SAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE----G  266 (304)
Q Consensus       193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~  266 (304)
                      +|.|++||+|..... ..+...    .+|...-  .-+-.+| ....+++++.|-..+||.++.+.++.+++-..    .
T Consensus       320 ~gkikLyD~R~~K~~-~~V~qY----eGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~  393 (425)
T KOG2695|consen  320 TGKIKLYDLRATKCK-KSVMQY----EGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEV  393 (425)
T ss_pred             cCceeEeeehhhhcc-cceeee----eccccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCCccccc
Confidence            999999999874221 112222    3443222  2233455 45578889999999999999999998886332    2


Q ss_pred             CeEEEEEC
Q 022019          267 GVTHVQFS  274 (304)
Q Consensus       267 ~v~~~~~~  274 (304)
                      .+.+++|.
T Consensus       394 d~~sv~~~  401 (425)
T KOG2695|consen  394 DIPSVAFD  401 (425)
T ss_pred             cccceehh
Confidence            45566664

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.87  E-value=1.2e-06  Score=72.87  Aligned_cols=150  Identities=10%  Similarity=0.080  Sum_probs=92.2

Q ss_pred             ceeCCCccE-EEEEeCC---CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE---cCCeEEEEEcCC
Q 022019          132 SASDPTSCV-FASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRVFDVHR  203 (304)
Q Consensus       132 ~~~~~~~~~-l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~---~d~~i~v~d~~~  203 (304)
                      ..++|+|+. ++..+.+   ..|+++|+.+++.........      ......|+|||+.++ +.   .+..|+++|+..
T Consensus       193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g------~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG------MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC------cEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            356899984 6654443   469999998887655443222      445678999998887 32   335688888765


Q ss_pred             CCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC--eEEEEecCCceEeEEeccccCCeEEEEECCCCcEEE
Q 022019          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  281 (304)
                      +.  .   ..+.    .+........|+|++..++++....+  .|++.|+.+++....... ..  ....|+|||++|+
T Consensus       267 g~--~---~~LT----~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia  334 (419)
T PRK04043        267 KT--L---TQIT----NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIV  334 (419)
T ss_pred             Cc--E---EEcc----cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEE
Confidence            31  1   1111    11112334579996655666654444  477788877665332221 11  1348999999988


Q ss_pred             EeeccC--------CeEEEEecccce
Q 022019          282 TGGRKD--------PYILCWDLRKAV  299 (304)
Q Consensus       282 ~~~~~d--------~~i~vwd~~~~~  299 (304)
                      ..+...        ..|.+.|+.++.
T Consensus       335 ~~~~~~~~~~~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        335 YSSRETNNEFGKNTFNLYLISTNSDY  360 (419)
T ss_pred             EEEcCCCcccCCCCcEEEEEECCCCC
Confidence            776232        368888887764

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=3.6e-08  Score=78.22  Aligned_cols=210  Identities=12%  Similarity=0.048  Sum_probs=136.2

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      -|++.|+.+.-+ -.+++.+++.||.++.|--..-....-+.              ....|-..+.++       +.+.+
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVK--------------hFraHL~~I~sl-------~~S~d   64 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVK--------------HFRAHLGVILSL-------AVSYD   64 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehh--------------hhHHHHHHHHhh-------hcccc
Confidence            377778777654 56799999999999999654211000000              001111222222       33668


Q ss_pred             ccEEEEEeC-CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCC--cEEEEE--cCCeEEEEEcCCCCccceeee
Q 022019          138 SCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFAG--YNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       138 ~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~--~d~~i~v~d~~~~~~~~~~~~  212 (304)
                      +.++.+.+. |..++++|+.+-....-+....-.    ...++..+|..  ..++++  .++.+.++|-.....+..   
T Consensus        65 g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP----g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~---  137 (558)
T KOG0882|consen   65 GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP----GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG---  137 (558)
T ss_pred             ceeEeeccCcccceeEEEeeccchhhhcccccCC----CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccc---
Confidence            888999887 999999999875544333322210    11122223321  255544  889999999876432211   


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC------ceEeEEe---------ccccCCeEEEEECCCC
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN------MELLYVL---------HGQEGGVTHVQFSRDG  277 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~---------~~~~~~v~~~~~~~~~  277 (304)
                         ....-|..+|..+.++| .+..+++....|.|.-|....      .+....+         .-.+....++.|+|+|
T Consensus       138 ---~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g  213 (558)
T KOG0882|consen  138 ---YFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG  213 (558)
T ss_pred             ---eecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc
Confidence               12255788899999999 777888888889999998762      1111122         1234567899999999


Q ss_pred             cEEEEeeccCCeEEEEecccceee
Q 022019          278 NYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       278 ~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      ..+.+-+ .|..|+++++++|+.+
T Consensus       214 ~qistl~-~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  214 AQISTLN-PDRKVRGFVFKTGKLV  236 (558)
T ss_pred             CcccccC-cccEEEEEEeccchhh
Confidence            9999999 9999999999998754

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=2.6e-09  Score=91.38  Aligned_cols=205  Identities=15%  Similarity=0.172  Sum_probs=136.1

Q ss_pred             ccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEe
Q 022019           47 YHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC  126 (304)
Q Consensus        47 ~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  126 (304)
                      +..++..+.+..|+..-+|++|+.+.++|+.|+-.|.|+++++.++......+.                 |+.+++.+.
T Consensus      1088 FSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-----------------H~SavT~ve 1150 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-----------------HQSAVTLVE 1150 (1516)
T ss_pred             HhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc-----------------ccccccccc
Confidence            344566678889999999999999999999999999999999998765443333                 335555553


Q ss_pred             ecCccceeCCCccEEEEEeCCC--CEEEEEcCC-CeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcC
Q 022019          127 WFPHMSASDPTSCVFASTTRDH--PIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVH  202 (304)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~  202 (304)
                      -       +.+|..+++.+.-.  -..+|++.+ +....++.         .-.++.|+..-..-+.| ......+||+.
T Consensus      1151 P-------s~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~---------ed~~vkFsn~~q~r~~gt~~d~a~~YDvq 1214 (1516)
T KOG1832|consen 1151 P-------SVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD---------EDKAVKFSNSLQFRALGTEADDALLYDVQ 1214 (1516)
T ss_pred             c-------cCCcceeeeeccccCchHHHhccccccCcccccc---------ccceeehhhhHHHHHhcccccceEEEecc
Confidence            3       55676666554433  357999864 44444444         33478898765444444 55678999998


Q ss_pred             CCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEE
Q 022019          203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT  282 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  282 (304)
                      +.......+...    .+....-....|+|++ .+++   .||  .+||.+..+.+..|...... -.-.|+|.|..++.
T Consensus      1215 T~~~l~tylt~~----~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVII 1283 (1516)
T KOG1832|consen 1215 TCSPLQTYLTDT----VTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVII 1283 (1516)
T ss_pred             cCcHHHHhcCcc----hhhhhhccccccCCCc-ceEe---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEe
Confidence            853322211111    1222223678899944 4544   344  48999988877777644322 23469999999988


Q ss_pred             eeccCCeEEEEecccceee
Q 022019          283 GGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       283 ~~~~d~~i~vwd~~~~~~~  301 (304)
                      -+      -|||+++.+.+
T Consensus      1284 NS------EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1284 NS------EIWDMRTFKLL 1296 (1516)
T ss_pred             ec------hhhhhHHHHHH
Confidence            77      48999987543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=4.7e-07  Score=73.92  Aligned_cols=182  Identities=13%  Similarity=0.213  Sum_probs=116.0

Q ss_pred             eEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEE
Q 022019           64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS  143 (304)
Q Consensus        64 ~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  143 (304)
                      +-+.|||-|.||+|-..-| |.+|-=.+                  ......+.| ..|.-+       .|||+.++|++
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~------------------f~r~~RF~H-p~Vq~i-------dfSP~EkYLVT  266 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGES------------------FDRIQRFYH-PGVQFI-------DFSPNEKYLVT  266 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCcc------------------HHHHHhccC-CCceee-------ecCCccceEEE
Confidence            5689999999999988765 78994321                  111122222 223333       44788888887


Q ss_pred             EeC-----------CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeee
Q 022019          144 TTR-----------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       144 ~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~  212 (304)
                      =+.           ...++|||+.+|.....+........  .-.-+.||.|++++|.-....|.||+...        .
T Consensus       267 ~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~--~WP~frWS~DdKy~Arm~~~sisIyEtps--------f  336 (698)
T KOG2314|consen  267 YSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYL--KWPIFRWSHDDKYFARMTGNSISIYETPS--------F  336 (698)
T ss_pred             ecCCccccCcccCCCceEEEEEccccchhcceeccCCCcc--ccceEEeccCCceeEEeccceEEEEecCc--------e
Confidence            643           25799999999998888876432111  12347899999999965558899998754        1


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecC-----CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEe
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG  283 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  283 (304)
                      .+.....-.-..|....|+| .+.+||-=+..     ..+.+..+.+++.+.+-.-+.-.=..+.|-.+|.+|+.-
T Consensus       337 ~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvk  411 (698)
T KOG2314|consen  337 MLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVK  411 (698)
T ss_pred             eeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEE
Confidence            11111112234488899999 67677653321     246667777776666665554333456777888888753

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.84  E-value=4.8e-06  Score=68.95  Aligned_cols=75  Identities=20%  Similarity=0.257  Sum_probs=61.9

Q ss_pred             ccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       220 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      .....+.+++++| ....++.|+.||.|.+||...+...  +....-..+.++|+|+|..+++|+ ..|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s-~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGS-EQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEc-CCceEEEEEeecC
Confidence            4566799999999 7789999999999999998766433  223445678999999999999999 8999999998643

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.81  E-value=1.3e-05  Score=61.82  Aligned_cols=192  Identities=17%  Similarity=0.171  Sum_probs=111.4

Q ss_pred             CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCE
Q 022019           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI  150 (304)
Q Consensus        71 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i  150 (304)
                      ++.++++++.++.+..||..+++............              ..       |     ...+..++++..++.+
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~--------------~~-------~-----~~~~~~v~v~~~~~~l   88 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS--------------GA-------P-----VVDGGRVYVGTSDGSL   88 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG--------------SG-------E-----EEETTEEEEEETTSEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc--------------ce-------e-----eecccccccccceeee
Confidence            56677777899999999998876543322211000              00       0     1134456666688899


Q ss_pred             EEEEcCCCeeeEEe-ecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeecccccccc-----
Q 022019          151 HLWDATTGLLRCTY-RAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG-----  223 (304)
Q Consensus       151 ~i~d~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-----  223 (304)
                      +.+|..+|+..... ................+.  +..++++ .++.|..+|++++....    ...........     
T Consensus        89 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~tG~~~w----~~~~~~~~~~~~~~~~  162 (238)
T PF13360_consen   89 YALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKTGKLLW----KYPVGEPRGSSPISSF  162 (238)
T ss_dssp             EEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEEEEEETTTTEEEE----EEESSTT-SS--EEEE
T ss_pred             EecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcEEEEecCCCcEEE----EeecCCCCCCcceeee
Confidence            99999999988774 322110000111223322  6666655 79999999998753211    11111100001     


Q ss_pred             --ceeEEEeecCCCcEEEEEecCCe-EEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          224 --IMSAIAFSPTHTGMLAIGSYSQT-SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       224 --~v~~~~~~p~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                        ....+.+.  ++ .++.++.++. +.+ |+.+++.+....  ...+..+ ..+++..|+.++ .++.|..||+++|+.
T Consensus       163 ~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~-~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  163 SDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTS-SDGRLYALDLKTGKV  234 (238)
T ss_dssp             TTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred             cccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence              11233333  33 6666777775 555 999998664333  2223331 346788899888 899999999999987


Q ss_pred             ee
Q 022019          301 VV  302 (304)
Q Consensus       301 ~~  302 (304)
                      +-
T Consensus       235 ~W  236 (238)
T PF13360_consen  235 VW  236 (238)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

...

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=2.9e-07  Score=72.20  Aligned_cols=82  Identities=23%  Similarity=0.447  Sum_probs=64.5

Q ss_pred             EEeecCCeEEEEeecCccceeCCCcc-EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcE-EEEE
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK-IFAG  191 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~  191 (304)
                      +...++..|.+++|       +|..+ ++..++.+..|+|.|+++...+..+..+.      .+++++|+-+... |++|
T Consensus       188 ~lp~~g~~Irdlaf-------Sp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~------~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAF-------SPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN------QIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             cccccchhhhhhcc-------CccccceeeeeccCceEEEEecccceeeeheeccC------CceeeeeccCCcceeEEe
Confidence            44455566777766       55555 78899999999999999988888777664      8999999987654 5588


Q ss_pred             -cCCeEEEEEcCCCCccc
Q 022019          192 -YNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       192 -~d~~i~v~d~~~~~~~~  208 (304)
                       ..|.|.|||++.++..+
T Consensus       255 l~nG~VlvyD~R~~~~~~  272 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQPEGPL  272 (463)
T ss_pred             ccCceEEEEEccCCCchH
Confidence             99999999999865443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.75  E-value=1.5e-06  Score=76.09  Aligned_cols=147  Identities=15%  Similarity=0.248  Sum_probs=101.2

Q ss_pred             CccEEEEE-eCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC-------CcEEEEE-cCCeEEEEEcCCCCcc
Q 022019          137 TSCVFAST-TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-------GTKIFAG-YNKSVRVFDVHRPGRD  207 (304)
Q Consensus       137 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-------~~~l~~~-~d~~i~v~d~~~~~~~  207 (304)
                      +.++|+.. .....|+-.|+..|+.+..+..+...    +|..+  .|+       ....+.| .+..+..||.|..+..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~----~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k  565 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI----PVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK  565 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc----ceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCc
Confidence            34444443 34578999999999999999987642    24443  342       2233455 8899999999975422


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccC
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD  287 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d  287 (304)
                      ..  .. ...........+|++-+. +| +||+|+.+|.||+||--..+.-..+.+-..+|.+|..+.||+||++.+  +
T Consensus       566 ~v--~~-~~k~Y~~~~~Fs~~aTt~-~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~  638 (794)
T PF08553_consen  566 LV--DS-QSKQYSSKNNFSCFATTE-DG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--K  638 (794)
T ss_pred             ee--ec-cccccccCCCceEEEecC-Cc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--c
Confidence            11  10 011122334477887776 44 899999999999999533334445667788999999999999999887  7


Q ss_pred             CeEEEEecc
Q 022019          288 PYILCWDLR  296 (304)
Q Consensus       288 ~~i~vwd~~  296 (304)
                      ..|.|++..
T Consensus       639 tyLlLi~t~  647 (794)
T PF08553_consen  639 TYLLLIDTL  647 (794)
T ss_pred             ceEEEEEEe
Confidence            788888863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.71  E-value=1.2e-05  Score=62.03  Aligned_cols=150  Identities=17%  Similarity=0.146  Sum_probs=90.8

Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeec
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG  216 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~  216 (304)
                      ++..+++++.++.++.||..+|+.............  .    ....++..++...++.++.+|..++........... 
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~--~----~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-  107 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG--A----PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-  107 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS--G----EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc--e----eeecccccccccceeeeEecccCCcceeeeeccccc-
Confidence            455677778999999999999998887776432111  1    122234444455788999999877543222111100 


Q ss_pred             cccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCC----------e-EEEEECCCCcEEEEeec
Q 022019          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG----------V-THVQFSRDGNYLYTGGR  285 (304)
Q Consensus       217 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~  285 (304)
                       ............+.   +..++++..++.|..+|+++++.+.........          + ..+.+. ++ .++.++ 
T Consensus       108 -~~~~~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~-  180 (238)
T PF13360_consen  108 -PPAGVRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSS-  180 (238)
T ss_dssp             -CTCSTB--SEEEEE---TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEEC-
T ss_pred             -cccccccccCceEe---cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEc-
Confidence             00011111222222   447778888999999999999998887654322          1 233333 45 666666 


Q ss_pred             cCCe-EEEEecccceee
Q 022019          286 KDPY-ILCWDLRKAVQV  301 (304)
Q Consensus       286 ~d~~-i~vwd~~~~~~~  301 (304)
                      .++. +.+ |+.+++.+
T Consensus       181 ~~g~~~~~-d~~tg~~~  196 (238)
T PF13360_consen  181 GDGRVVAV-DLATGEKL  196 (238)
T ss_dssp             CTSSEEEE-ETTTTEEE
T ss_pred             CCCeEEEE-ECCCCCEE
Confidence            6775 555 99998754

...

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.7e-06  Score=68.07  Aligned_cols=83  Identities=12%  Similarity=0.234  Sum_probs=63.0

Q ss_pred             eeeeecCCCCceeEEEEcCCCC-eEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           52 QFRTSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        52 ~~~~~~~h~~~V~~i~~s~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      ....+.+|...|.+++|||..+ ++..++.+..|+|.|+.+......                  ......+++++|.-.
T Consensus       185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss------------------y~a~~~~wSC~wDld  246 (463)
T KOG1645|consen  185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS------------------YIAYNQIWSCCWDLD  246 (463)
T ss_pred             hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh------------------eeccCCceeeeeccC
Confidence            3446678889999999999766 788899999999999986533211                  122278899999432


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCC
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTG  158 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~  158 (304)
                            +.+++..|...|.|.+||++..
T Consensus       247 ------e~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  247 ------ERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             ------CcceeEEeccCceEEEEEccCC
Confidence                  3567888889999999999853

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.68  E-value=8e-06  Score=72.97  Aligned_cols=178  Identities=16%  Similarity=0.211  Sum_probs=100.7

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccc--------ccccccCCccceEEEeec------------
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA--------CSLAKDQDSYEASLVVTE------------  118 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~------------  118 (304)
                      -.+.|.+++||||+..++..+.++++.+-+-. .........        .....+-......+....            
T Consensus       108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e  186 (1265)
T KOG1920|consen  108 VDNGISAASWSPDEELLALITGRQTLLFMTKD-FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE  186 (1265)
T ss_pred             ccCceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence            46789999999999999988888887765431 111000000        000000000001111000            


Q ss_pred             --------CCeEEEEeecCccceeCCCccEEEEE-----eCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCC
Q 022019          119 --------GESVYDFCWFPHMSASDPTSCVFAST-----TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG  185 (304)
Q Consensus       119 --------~~~v~~~~~~~~~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  185 (304)
                              ...-..++|       -.||+++++.     ...+.|++||-+ |.....-.....     .-.+++|-|.|
T Consensus       187 k~~~~~~~~~~~~~IsW-------RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~-----l~~~LsWkPsg  253 (1265)
T KOG1920|consen  187 KALEQIEQDDHKTSISW-------RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEG-----LQHSLSWKPSG  253 (1265)
T ss_pred             ccccchhhccCCceEEE-------ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccc-----cccceeecCCC
Confidence                    011123444       6689888883     333789999976 543332222111     23489999999


Q ss_pred             cEEEE----EcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEE---EecCCeEEEEecCCce
Q 022019          186 TKIFA----GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI---GSYSQTSAIYREDNME  256 (304)
Q Consensus       186 ~~l~~----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~---~~~dg~i~i~d~~~~~  256 (304)
                      ..+++    +.|+.|.+|.-+...     ...+..........+..++|+. ++.+|++   ......|++|-+.+..
T Consensus       254 s~iA~iq~~~sd~~IvffErNGL~-----hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  254 SLIAAIQCKTSDSDIVFFERNGLR-----HGEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             CeEeeeeecCCCCcEEEEecCCcc-----ccccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCeE
Confidence            99994    266779998764321     1212222233334489999999 7778887   4445569999887653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.66  E-value=6.5e-06  Score=68.16  Aligned_cols=190  Identities=11%  Similarity=0.049  Sum_probs=105.8

Q ss_pred             CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCE
Q 022019           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI  150 (304)
Q Consensus        71 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i  150 (304)
                      .+..+++++.+|.|..+|..+++.........                  .+.   -.|     ..++..+++++.+|.+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~------------------~~~---~~p-----~v~~~~v~v~~~~g~l  117 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDE------------------RLS---GGV-----GADGGLVFVGTEKGEV  117 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCC------------------Ccc---cce-----EEcCCEEEEEcCCCEE
Confidence            46688888889999999988876543322111                  000   001     1145577788889999


Q ss_pred             EEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEe
Q 022019          151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF  230 (304)
Q Consensus       151 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  230 (304)
                      +.+|..+|+.........      .+.+...-.++..++...++.++.||.+++....+...  ......... ..+...
T Consensus       118 ~ald~~tG~~~W~~~~~~------~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~--~~~~~~~~~-~~sp~~  188 (377)
T TIGR03300       118 IALDAEDGKELWRAKLSS------EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSR--VTPALTLRG-SASPVI  188 (377)
T ss_pred             EEEECCCCcEeeeeccCc------eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEcc--CCCceeecC-CCCCEE
Confidence            999999998876655432      11111111134444445899999999987533222110  000000000 011112


Q ss_pred             ecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC----C---e----EEEEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          231 SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG----G---V----THVQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       231 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~---v----~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      .  ++ .++.+..+|.+..+|.++++.+........    .   +    .+..+  .+..+++++ .+|.++.||..+|+
T Consensus       189 ~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~tG~  262 (377)
T TIGR03300       189 A--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLRSGR  262 (377)
T ss_pred             E--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECCCCc
Confidence            2  22 567788889999999988876654321100    0   0    01111  244566666 67778888877775


Q ss_pred             ee
Q 022019          300 QV  301 (304)
Q Consensus       300 ~~  301 (304)
                      .+
T Consensus       263 ~~  264 (377)
T TIGR03300       263 VL  264 (377)
T ss_pred             EE
Confidence            43

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.64  E-value=1.5e-08  Score=83.75  Aligned_cols=205  Identities=15%  Similarity=0.210  Sum_probs=129.8

Q ss_pred             CCceeEEEEcCCCC--eEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           60 NNFLKGIKWSPDGS--SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        60 ~~~V~~i~~s~~~~--~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      ...+.|+++.-+.+  .++.|..+|.|.+-.++...-.               ...+..++..+.++++|.+.      |
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---------------s~E~tp~~ar~Ct~lAwneL------D  114 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---------------SAEVTPGYARPCTSLAWNEL------D  114 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc---------------cceecccccccccccccccc------c
Confidence            44578888876443  6788889999999887643221               11133334467788888654      5


Q ss_pred             ccEEEEEe----CCCCEEEEEcCCC--eeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcccee
Q 022019          138 SCVFASTT----RDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       138 ~~~l~~~~----~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~  210 (304)
                      .++||+|-    .|..+.|||+.++  .+........  .......+++|..+.+.+.+| ....+.++|+|..-.....
T Consensus       115 tn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s  192 (783)
T KOG1008|consen  115 TNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS  192 (783)
T ss_pred             HHHHHhhhhhhcccCCccceecccccCCCcccccccc--ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh
Confidence            56777773    3678999999876  2222222222  122255688999888888888 7789999999842111111


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEe-cCCce-EeEEeccccC----CeEEEEECCCCc-EEEEe
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR-EDNME-LLYVLHGQEG----GVTHVQFSRDGN-YLYTG  283 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d-~~~~~-~~~~~~~~~~----~v~~~~~~~~~~-~l~~~  283 (304)
                      +         ....+..+..+|-.+.+++ ...||.|.+|| .++-+ ++..+...+.    .+..++|.|..+ .+++.
T Consensus       193 v---------nTk~vqG~tVdp~~~nY~c-s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l  262 (783)
T KOG1008|consen  193 V---------NTKYVQGITVDPFSPNYFC-SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVL  262 (783)
T ss_pred             h---------hhhhcccceecCCCCCcee-ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhh
Confidence            1         1223566777774444555 45599999999 44332 3333332222    489999999653 46666


Q ss_pred             eccCCeEEEEeccc
Q 022019          284 GRKDPYILCWDLRK  297 (304)
Q Consensus       284 ~~~d~~i~vwd~~~  297 (304)
                      .+..++|+++++..
T Consensus       263 ~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  263 SRDSITIRLYDICV  276 (783)
T ss_pred             ccCcceEEEecccc
Confidence            66788999999853

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.64  E-value=2.6e-06  Score=68.99  Aligned_cols=202  Identities=11%  Similarity=0.158  Sum_probs=128.5

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      .+-++..++|||.|.+|++....| |.+|.-.....                  ...+.| ..|+.+.|       +|++
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~------------------l~~~~~-~~V~~~~f-------SP~~   83 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAK------------------LVRFRH-PDVKYLDF-------SPNE   83 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhh------------------eeeeec-CCceeccc-------Cccc
Confidence            556789999999999999877664 88997553221                  122222 34555544       7888


Q ss_pred             cEEEEEeCCC---------------CEEEEEcCCCeeeEEeecccccccccceE-EEEECCCCcEEEEEcCCeEEEEEcC
Q 022019          139 CVFASTTRDH---------------PIHLWDATTGLLRCTYRAYDAVDEITAAF-SVAFNPTGTKIFAGYNKSVRVFDVH  202 (304)
Q Consensus       139 ~~l~~~~~dg---------------~i~i~d~~~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~~~~d~~i~v~d~~  202 (304)
                      ++|.+-+..+               .+.+||+.+|..+..+.......   ..+ -+.|+-+.+++|--....++|+++ 
T Consensus        84 kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~---~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-  159 (561)
T COG5354          84 KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY---LGWPVLKFSIDDKYVARVVGSSLYIHEI-  159 (561)
T ss_pred             ceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc---cccceeeeeecchhhhhhccCeEEEEec-
Confidence            8888876543               49999999999988887665411   133 678888888888225567999997 


Q ss_pred             CCCccceeeeeeeccccccccceeEEEeecC-CCcEEEE-----EecCCeEEEEecCCceEeEEeccccCCeEEEEECCC
Q 022019          203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT-HTGMLAI-----GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD  276 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  276 (304)
                      +..-....+..+      ....+....|+|- ++..|+.     ....+.+++|.+..+..+.+-.-..-.=..+.|.+.
T Consensus       160 t~n~~~~p~~~l------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~  233 (561)
T COG5354         160 TDNIEEHPFKNL------RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVL  233 (561)
T ss_pred             CCccccCchhhc------cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecC
Confidence            322111111111      1234788899993 2223332     345778999999877666554433333356889999


Q ss_pred             CcEEEEeec----------cCCeEEEEeccc
Q 022019          277 GNYLYTGGR----------KDPYILCWDLRK  297 (304)
Q Consensus       277 ~~~l~~~~~----------~d~~i~vwd~~~  297 (304)
                      |.+|+.--.          ....++++++..
T Consensus       234 g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e  264 (561)
T COG5354         234 GKYLLVLVMTHTKSNKSYFGESNLYLLRITE  264 (561)
T ss_pred             CceEEEEEEEeeecccceeccceEEEEeecc
Confidence            988764320          124577777653

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.63  E-value=4.7e-06  Score=71.04  Aligned_cols=105  Identities=13%  Similarity=0.146  Sum_probs=79.5

Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE----c------CCeEEEEEcCCCCccce
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG----Y------NKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~----~------d~~i~v~d~~~~~~~~~  209 (304)
                      +++.|...|+|.++|+.++.....+..|..     .|.++.|-...+++..+    .      -+.+.+-|++++-.   
T Consensus       439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~-----~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGls---  510 (1062)
T KOG1912|consen  439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTS-----LVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS---  510 (1062)
T ss_pred             eEEeecCCceEEEEEecchhhhhhhccccc-----ceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccc---
Confidence            588899999999999999988777777665     88999998766665522    1      13467888887522   


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~  255 (304)
                        ..+.........+|+.+..+. .+.+++..-.+.-+.+||+++.
T Consensus       511 --k~fR~l~~~despI~~irvS~-~~~yLai~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  511 --KRFRGLQKPDESPIRAIRVSS-SGRYLAILFRREPLEIWDLKTL  553 (1062)
T ss_pred             --cccccCCCCCcCcceeeeecc-cCceEEEEecccchHHHhhccc
Confidence              222222355677899999999 8889999999999999998644

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.61  E-value=5.3e-05  Score=59.68  Aligned_cols=210  Identities=14%  Similarity=0.132  Sum_probs=117.4

Q ss_pred             eEEEEcCCCCeEEEe--cCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           64 KGIKWSPDGSSFLTS--SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        64 ~~i~~s~~~~~l~s~--~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      ..++++.||++++..  +---+|.|-|+...+...++...                  ....-   .|     + ..+-|
T Consensus        98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P------------------GC~~i---yP-----~-~~~~F  150 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP------------------GCWLI---YP-----S-GNRGF  150 (342)
T ss_dssp             GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT------------------SEEEE---EE-----E-ETTEE
T ss_pred             cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC------------------CEEEE---Ee-----c-CCCce
Confidence            346778888877654  33456888888765443222211                  11111   11     1 12347


Q ss_pred             EEEeCCCCEEEEEcC-CCeeeEEeecccccccccceEEEEECC-CCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccc-
Q 022019          142 ASTTRDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK-  218 (304)
Q Consensus       142 ~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-  218 (304)
                      .+.+.||++.-..+. .|+........-.......+..-++.. .+.+++.+.+|.|+-.|+......+..-..+.... 
T Consensus       151 ~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e  230 (342)
T PF06433_consen  151 SMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAE  230 (342)
T ss_dssp             EEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHH
T ss_pred             EEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccc
Confidence            788899999999887 455543322111111111222334444 34566699999999999976543222111111000 


Q ss_pred             ---cccccceeEEEeecCCCcEEEEEec--CC-------eEEEEecCCceEeEEeccccCCeEEEEECCCCc-EEEEeec
Q 022019          219 ---EGQAGIMSAIAFSPTHTGMLAIGSY--SQ-------TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-YLYTGGR  285 (304)
Q Consensus       219 ---~~~~~~v~~~~~~p~~~~~l~~~~~--dg-------~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~  285 (304)
                         .-..+...-+++++..+++++.-..  +|       .|.+||+.+++.+..+.. ..++.++..+.+.+ +|++.+.
T Consensus       231 ~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~  309 (342)
T PF06433_consen  231 KADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSA  309 (342)
T ss_dssp             HHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEET
T ss_pred             cccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcC
Confidence               0012234568888745544443221  11       488999999999999984 34677999988765 6666543


Q ss_pred             cCCeEEEEecccceee
Q 022019          286 KDPYILCWDLRKAVQV  301 (304)
Q Consensus       286 ~d~~i~vwd~~~~~~~  301 (304)
                      .++.|.+||..+|+.+
T Consensus       310 ~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  310 GDGTLDVYDAATGKLV  325 (342)
T ss_dssp             TTTEEEEEETTT--EE
T ss_pred             CCCeEEEEeCcCCcEE
Confidence            6899999999999765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.61  E-value=4.4e-07  Score=74.87  Aligned_cols=76  Identities=12%  Similarity=0.195  Sum_probs=61.4

Q ss_pred             cCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC
Q 022019           57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (304)
Q Consensus        57 ~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (304)
                      -.....|.|.+++|+.+.|+.|+.||+|.+||...+..                          ......+.|..++++|
T Consensus       256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--------------------------~~~ka~~~P~~iaWHp  309 (545)
T PF11768_consen  256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--------------------------LLAKAEFIPTLIAWHP  309 (545)
T ss_pred             EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--------------------------eeeeecccceEEEEcC
Confidence            35778899999999999999999999999999864311                          1123345566677789


Q ss_pred             CccEEEEEeCCCCEEEEEcCCC
Q 022019          137 TSCVFASTTRDHPIHLWDATTG  158 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~  158 (304)
                      +|..+++|+..|.+.+||+.-.
T Consensus       310 ~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  310 DGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CCcEEEEEcCCceEEEEEeecC
Confidence            9999999999999999998643

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=1.5e-06  Score=69.31  Aligned_cols=243  Identities=13%  Similarity=0.112  Sum_probs=152.3

Q ss_pred             hhhcHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecC-CCeEEEeeCCCCCCccc
Q 022019           19 TEVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYD   97 (304)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~-dg~v~vwd~~~~~~~~~   97 (304)
                      .+++.+++.++..+.|..     ....-..+   ...+..|.+.|.+++.+-+|.++.|.+. |..++++|+.+-....-
T Consensus        20 a~fiiqASlDGh~KFWkK-----s~isGvEf---VKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm   91 (558)
T KOG0882|consen   20 AKFIIQASLDGHKKFWKK-----SRISGVEF---VKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM   91 (558)
T ss_pred             hheEEeeecchhhhhcCC-----CCccceee---hhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhh
Confidence            445556677777777742     11111111   2245678999999999999999999877 99999999986544222


Q ss_pred             cccccccccCCccceEEEeecCCeEEEEeecCcccee-CCCc----cEEEEEeCCCCEEEEEcCCCeee-EEeecccccc
Q 022019           98 VNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS-DPTS----CVFASTTRDHPIHLWDATTGLLR-CTYRAYDAVD  171 (304)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~----~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~  171 (304)
                      +...                         +.|..+.+ ...|    .+-++.-.+|.+.++|-....+. ..+..    -
T Consensus        92 iKL~-------------------------~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk----l  142 (558)
T KOG0882|consen   92 IKLV-------------------------DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK----L  142 (558)
T ss_pred             cccc-------------------------cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc----c
Confidence            1111                         11111111 1111    23334456789999997654322 21111    2


Q ss_pred             cccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccce--eee-----eeeccccccccceeEEEeecCCCcEEEEEec
Q 022019          172 EITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE--KYS-----TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY  243 (304)
Q Consensus       172 ~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~--~~~-----~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  243 (304)
                      |..+|..+.+++.+..+.+. ..|.|.-|.....-...+  ...     +.............++.|+| .+..+.+-+.
T Consensus       143 H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~  221 (558)
T KOG0882|consen  143 HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNP  221 (558)
T ss_pred             ccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCc
Confidence            33499999999999888876 889999999863100000  000     00111123345578999999 7778888889


Q ss_pred             CCeEEEEecCCceEeEEecc--------------------------------cc-CCeEEEEECCCCcEEEEeeccCCeE
Q 022019          244 SQTSAIYREDNMELLYVLHG--------------------------------QE-GGVTHVQFSRDGNYLYTGGRKDPYI  290 (304)
Q Consensus       244 dg~i~i~d~~~~~~~~~~~~--------------------------------~~-~~v~~~~~~~~~~~l~~~~~~d~~i  290 (304)
                      |..|++++.++++.++.+..                                |. ..-+.+.|...|++|+-+. .=| |
T Consensus       222 DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t-~~g-i  299 (558)
T KOG0882|consen  222 DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT-ILG-I  299 (558)
T ss_pred             ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec-cee-E
Confidence            99999999988865544321                                11 1345678888999998887 444 8


Q ss_pred             EEEecccceee
Q 022019          291 LCWDLRKAVQV  301 (304)
Q Consensus       291 ~vwd~~~~~~~  301 (304)
                      +|.++.++..+
T Consensus       300 kvin~~tn~v~  310 (558)
T KOG0882|consen  300 KVINLDTNTVV  310 (558)
T ss_pred             EEEEeecCeEE
Confidence            89998887654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.60  E-value=2.6e-05  Score=64.63  Aligned_cols=147  Identities=14%  Similarity=0.108  Sum_probs=87.4

Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeeccccccc--ccceEEEEECC--CCcEEE-EEcCCeEEEEEcCCCCccceeeee
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE--ITAAFSVAFNP--TGTKIF-AGYNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~v~~i~~~~--~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      ..++.+..+|.+..+|+++|+.............  ......+.-+|  .+..++ ++.++.++.||..++....    .
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W----~  266 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW----K  266 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEE----e
Confidence            3577788889999999999987654432111000  00000011111  234455 5689999999997653211    1


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc-CCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                      ..  ...    .......   +..+++++.+|.+..+|..+++.+....... ....+...  .+..|++++ .+|.|++
T Consensus       267 ~~--~~~----~~~p~~~---~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~-~~G~l~~  334 (377)
T TIGR03300       267 RD--ASS----YQGPAVD---DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD-FEGYLHW  334 (377)
T ss_pred             ec--cCC----ccCceEe---CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe-CCCEEEE
Confidence            11  011    1122222   3366777889999999999998776553211 12222222  366888888 9999999


Q ss_pred             Eecccceee
Q 022019          293 WDLRKAVQV  301 (304)
Q Consensus       293 wd~~~~~~~  301 (304)
                      +|..+|+.+
T Consensus       335 ~d~~tG~~~  343 (377)
T TIGR03300       335 LSREDGSFV  343 (377)
T ss_pred             EECCCCCEE
Confidence            999998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.54  E-value=3.1e-05  Score=69.45  Aligned_cols=203  Identities=11%  Similarity=0.193  Sum_probs=128.1

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      ..+.|.++.|-.++..++.+..+|.|.+-|..+....                  +...-...|.+++|       |||+
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e------------------ivg~vd~GI~aasw-------S~De  121 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE------------------IVGNVDNGISAASW-------SPDE  121 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEccccccee------------------eeeeccCceEEEee-------cCCC
Confidence            3468999999999998888889999999887755332                  22223367788888       7899


Q ss_pred             cEEEEEeCCCCEEEEEcC----CCeee-------------------EEeeccccc-------------c---cccceEEE
Q 022019          139 CVFASTTRDHPIHLWDAT----TGLLR-------------------CTYRAYDAV-------------D---EITAAFSV  179 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~----~~~~~-------------------~~~~~~~~~-------------~---~~~~v~~i  179 (304)
                      ++++..+.++++.+-+-.    ..+..                   ..+.+..+.             +   -...=++|
T Consensus       122 e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~I  201 (1265)
T KOG1920|consen  122 ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSI  201 (1265)
T ss_pred             cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceE
Confidence            999888888777654320    11110                   111110000             0   00112469


Q ss_pred             EECCCCcEEEE-----EcC-CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEe---cCCeEEEE
Q 022019          180 AFNPTGTKIFA-----GYN-KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIY  250 (304)
Q Consensus       180 ~~~~~~~~l~~-----~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~i~  250 (304)
                      .|--||.++++     ..+ ..|+|||-+.         .+........+.-.+++|-| .|.++++-.   .|+.|.+|
T Consensus       202 sWRgDg~~fAVs~~~~~~~~RkirV~drEg---------~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~Ivff  271 (1265)
T KOG1920|consen  202 SWRGDGEYFAVSFVESETGTRKIRVYDREG---------ALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFF  271 (1265)
T ss_pred             EEccCCcEEEEEEEeccCCceeEEEecccc---------hhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEE
Confidence            99999999995     245 7899999751         11111122223345899999 666777643   35679999


Q ss_pred             ecCCceEeEE----eccccCCeEEEEECCCCcEEEE---eeccCCeEEEEecccc
Q 022019          251 REDNMELLYV----LHGQEGGVTHVQFSRDGNYLYT---GGRKDPYILCWDLRKA  298 (304)
Q Consensus       251 d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~---~~~~d~~i~vwd~~~~  298 (304)
                      .- +|-.-..    +......|..++|+.++..|+.   .. ....|.+|-+.+-
T Consensus       272 Er-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~-e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  272 ER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNL-ENSLVQLWTTGNY  324 (1265)
T ss_pred             ec-CCccccccccCCcccccchheeeecCCCCceeeeeccc-ccceEEEEEecCe
Confidence            84 4432222    2223345999999999999887   44 4555999988764

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=1.6e-05  Score=68.04  Aligned_cols=170  Identities=15%  Similarity=0.111  Sum_probs=103.8

Q ss_pred             ceeeeecCCCCceeEEEEcCC-------------CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEee
Q 022019           51 NQFRTSSIPNNFLKGIKWSPD-------------GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT  117 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~-------------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (304)
                      .....+..|.+.|.-..+.-+             |.+++||+.||+|.|-.+.+....                  ....
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~------------------~~~d  110 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEI------------------TQYD  110 (846)
T ss_pred             cceeeeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccc------------------eeEe
Confidence            334456778877777766555             999999999999999887654332                  1222


Q ss_pred             cCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCC-C-eeeEEeecccccccccceEEEEECCCCcEEEEEcCCe
Q 022019          118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-G-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKS  195 (304)
Q Consensus       118 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~  195 (304)
                      -..++.+++++|....  ...+.+++|+..| +.++.-+= | +....+..     ..++|.++.|.  |++||=..|-.
T Consensus       111 f~rpiksial~Pd~~~--~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~-----~eG~I~~i~W~--g~lIAWand~G  180 (846)
T KOG2066|consen  111 FKRPIKSIALHPDFSR--QQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE-----GEGPIHSIKWR--GNLIAWANDDG  180 (846)
T ss_pred             cCCcceeEEeccchhh--hhhhheeecCcce-EEEehhhhhcCccceeeec-----CccceEEEEec--CcEEEEecCCC
Confidence            3357777777665321  2356799999988 77765321 1 11111222     22389999997  77998667777


Q ss_pred             EEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC
Q 022019          196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (304)
Q Consensus       196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~  253 (304)
                      |+|||+..... ...+..... ..........+.|.+ .. .|+.|= ..+|+|..++
T Consensus       181 v~vyd~~~~~~-l~~i~~p~~-~~R~e~fpphl~W~~-~~-~LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  181 VKVYDTPTRQR-LTNIPPPSQ-SVRPELFPPHLHWQD-ED-RLVIGW-GDSVKICSIK  233 (846)
T ss_pred             cEEEeccccce-eeccCCCCC-CCCcccCCCceEecC-CC-eEEEec-CCeEEEEEEe
Confidence            99999976422 111111111 111122245678887 33 455554 4478888876

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.51  E-value=1.7e-05  Score=65.76  Aligned_cols=189  Identities=16%  Similarity=0.155  Sum_probs=103.7

Q ss_pred             cCCCCceeEEEEcCCCCeEEEec---CC-CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           57 SIPNNFLKGIKWSPDGSSFLTSS---ED-KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        57 ~~h~~~V~~i~~s~~~~~l~s~~---~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ..-...+..-+|+|++..++...   .. ..+.++++.++...                         .+..........
T Consensus       189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-------------------------~i~~~~g~~~~P  243 (425)
T COG0823         189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-------------------------VILNFNGNNGAP  243 (425)
T ss_pred             cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-------------------------eeeccCCccCCc
Confidence            33455667778888887655432   22 35777887765432                         111122222233


Q ss_pred             eeCCCccEEEEEe-CCC--CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCcc
Q 022019          133 ASDPTSCVFASTT-RDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD  207 (304)
Q Consensus       133 ~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~  207 (304)
                      +|+|||+.|+.+. .||  .|+++|+..+.... +.....     .-..-.|+|||+.|+ ++ ..|.-.||-....+..
T Consensus       244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~g-----i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~  317 (425)
T COG0823         244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFG-----INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ  317 (425)
T ss_pred             cCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCc-----cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence            5689998776654 555  47777887776433 332221     222678999999999 55 6666555544433322


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCe--EEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      ...+   ..  ....  -..-.|+|++..+++....+|.  |.+.|+.++..+..+. +........|.|+|+.+...+
T Consensus       318 ~~ri---T~--~~~~--~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         318 VTRL---TF--SGGG--NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             eeEe---ec--cCCC--CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence            2211   11  1111  1266899954444444433454  7777776655444443 333445567777777665544

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.51  E-value=1.5e-05  Score=67.68  Aligned_cols=140  Identities=14%  Similarity=0.072  Sum_probs=86.4

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCC-----CeeeEEeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCcc
Q 022019          135 DPTSCVFASTTRDHPIHLWDATT-----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRD  207 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~  207 (304)
                      .++|++...  .++.|.+.|..+     ......+....      ....+.++|||+++++ + .+.+|.|+|+.+....
T Consensus       285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGK------sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~  356 (635)
T PRK02888        285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPK------NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL  356 (635)
T ss_pred             hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCC------CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence            345554444  246688888887     34444454443      6678999999999994 5 8999999999874321


Q ss_pred             ce----eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC----------ceEeEEeccccCCeEE---
Q 022019          208 FE----KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN----------MELLYVLHGQEGGVTH---  270 (304)
Q Consensus       208 ~~----~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~v~~---  270 (304)
                      +.    .-..+.....--. .....+|++ .+..+.+-.-|..|..||+..          ...+..+..|-.+-.-   
T Consensus       357 ~~~~~~~~~~vvaevevGl-GPLHTaFDg-~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~  434 (635)
T PRK02888        357 FDGKIKPRDAVVAEPELGL-GPLHTAFDG-RGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHAS  434 (635)
T ss_pred             hhccCCccceEEEeeccCC-CcceEEECC-CCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeec
Confidence            11    0011111111112 244678998 567888888899999999875          2345555544332211   


Q ss_pred             --EEECCCCcEEEEee
Q 022019          271 --VQFSRDGNYLYTGG  284 (304)
Q Consensus       271 --~~~~~~~~~l~~~~  284 (304)
                        =.-.|||+||++..
T Consensus       435 ~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        435 MGETKEADGKWLVSLN  450 (635)
T ss_pred             CCCcCCCCCCEEEEcc
Confidence              12367888887765

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=0.0003  Score=58.19  Aligned_cols=203  Identities=17%  Similarity=0.199  Sum_probs=131.6

Q ss_pred             eeEEEEcCCCC-eEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           63 LKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        63 V~~i~~s~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      -..++.++.+. .+++...++.|.+.|........                         ...+-..|..++++++++.+
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~-------------------------~~~vG~~P~~~~~~~~~~~v  130 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG-------------------------SIPVGLGPVGLAVDPDGKYV  130 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceee-------------------------EeeeccCCceEEECCCCCEE
Confidence            34678888777 44455556889999855432211                         11111266677779999777


Q ss_pred             EEEeC---CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCccceeeeeeec
Q 022019          142 ASTTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKG  216 (304)
Q Consensus       142 ~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~  216 (304)
                      .++..   ++++.+.|-.+.+..........     + ..++++|+|..+++.  .++.|.++|......  .. ... .
T Consensus       131 YV~n~~~~~~~vsvid~~t~~~~~~~~vG~~-----P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v--~~-~~~-~  200 (381)
T COG3391         131 YVANAGNGNNTVSVIDAATNKVTATIPVGNT-----P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV--VR-GSV-G  200 (381)
T ss_pred             EEEecccCCceEEEEeCCCCeEEEEEecCCC-----c-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce--ec-ccc-c
Confidence            66654   68899999888887776443321     3 789999999988854  689999999765211  10 000 0


Q ss_pred             cccccccceeEEEeecCCCcEEEEEecC--CeEEEEecCCceEeEE-eccccCCeEEEEECCCCcEEEEeeccCCeEEEE
Q 022019          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYS--QTSAIYREDNMELLYV-LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW  293 (304)
Q Consensus       217 ~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vw  293 (304)
                      ...........+.++|++...+++...+  +.+...|..++..... +.........+..+|+|.++++.....+.+.+.
T Consensus       201 ~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vi  280 (381)
T COG3391         201 SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVI  280 (381)
T ss_pred             cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEE
Confidence            0011222346789999555555555444  6899999988876655 222111457789999999999886355889998


Q ss_pred             eccccee
Q 022019          294 DLRKAVQ  300 (304)
Q Consensus       294 d~~~~~~  300 (304)
                      |..+...
T Consensus       281 d~~~~~v  287 (381)
T COG3391         281 DGATDRV  287 (381)
T ss_pred             eCCCCce
Confidence            8877543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=2e-05  Score=64.59  Aligned_cols=145  Identities=17%  Similarity=0.255  Sum_probs=100.3

Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcE-------EEEE-cCCeEEEEEcCCCCccceee
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK-------IFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-------l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                      +|.++.....++-.|++.|+.+..+..+.      .|.-+.+.|+.+.       -+.| .+..|.-||.|..+....  
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl--  419 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFED------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL--  419 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccC------CcceeeccCCcchhcccccccEEeecCCceEEecccccCccee--
Confidence            34455555679999999999999998877      4566777776431       1235 889999999986543211  


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                      ...............|++-..  ..++++||.+|.|++||--....-..+++-..+|..+..+.+|++|++.+  +..|.
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLl  495 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTE--SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLL  495 (644)
T ss_pred             eeeeccccccccccceeeecC--CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEE
Confidence            111111111222355555554  34899999999999999733334456778888999999999999999887  77888


Q ss_pred             EEecc
Q 022019          292 CWDLR  296 (304)
Q Consensus       292 vwd~~  296 (304)
                      +-++.
T Consensus       496 Li~t~  500 (644)
T KOG2395|consen  496 LIDTL  500 (644)
T ss_pred             EEEEe
Confidence            87764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.45  E-value=8.6e-05  Score=56.24  Aligned_cols=147  Identities=14%  Similarity=0.125  Sum_probs=91.9

Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCC--eeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                      +.+.+|++||+. .|..|-|-..++.  ..+.....+...  ...=..++|+||+..||.+ ..|+|++||+...  ...
T Consensus         4 ~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~--~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~--~lf   78 (282)
T PF15492_consen    4 ALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDP--NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS--ELF   78 (282)
T ss_pred             eecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCC--CchheEEEECCCCcEEEEEcCCCeEEEEecccc--eeE
Confidence            346788877765 5667777766543  223333333321  1144689999999999966 9999999999741  111


Q ss_pred             eeeeeeccccccccceeEEEeecCC-----CcEEEEEecCCeEEEEecCC-----ceEeEEec---cccCCeEEEEECCC
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTH-----TGMLAIGSYSQTSAIYREDN-----MELLYVLH---GQEGGVTHVQFSRD  276 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~---~~~~~v~~~~~~~~  276 (304)
                      .+.............|..+.|-+..     ...|++-..+|.++=|-+..     .+...++.   .+...|.++.++|.
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            1111111112233557778776532     33677778888887776532     23333433   24668999999999


Q ss_pred             CcEEEEee
Q 022019          277 GNYLYTGG  284 (304)
Q Consensus       277 ~~~l~~~~  284 (304)
                      .+.|+.||
T Consensus       159 h~LLlVgG  166 (282)
T PF15492_consen  159 HRLLLVGG  166 (282)
T ss_pred             CCEEEEec
Confidence            99988887

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.45  E-value=5.6e-08  Score=80.55  Aligned_cols=171  Identities=14%  Similarity=0.251  Sum_probs=109.6

Q ss_pred             eecCCCCceeEEEEcC-CCCeEEEec----CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC
Q 022019           55 TSSIPNNFLKGIKWSP-DGSSFLTSS----EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~-~~~~l~s~~----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (304)
                      ...+|....++++|++ |.+.||.|-    .|-.+.|||+.+.-.... ....+           .........++||  
T Consensus        97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk-e~~~f-----------s~~~l~gqns~cw--  162 (783)
T KOG1008|consen   97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK-ESPLF-----------SSSTLDGQNSVCW--  162 (783)
T ss_pred             ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc-ccccc-----------ccccccCcccccc--
Confidence            4457888999999999 777888773    466799999986533111 11100           0011233346777  


Q ss_pred             ccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECC-CCcEEEEEcCCeEEEEEc-CCCCcc
Q 022019          130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAGYNKSVRVFDV-HRPGRD  207 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~d~~i~v~d~-~~~~~~  207 (304)
                           -.+.+++.+|...+.++++|++....... ....     ..+..+..+| .+.+++...||.|.+||. +.-+..
T Consensus       163 -----lrd~klvlaGm~sr~~~ifdlRqs~~~~~-svnT-----k~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienp  231 (783)
T KOG1008|consen  163 -----LRDTKLVLAGMTSRSVHIFDLRQSLDSVS-SVNT-----KYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENP  231 (783)
T ss_pred             -----ccCcchhhcccccchhhhhhhhhhhhhhh-hhhh-----hhcccceecCCCCCceeccccCceeeccchhhhccH
Confidence                 34777899999999999999984322111 1111     1566788899 788888778999999994 332222


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecC-CeEEEEecC
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYRED  253 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~  253 (304)
                      +.   .+..........+..++|+|....++++.+.| ++|++||+.
T Consensus       232 l~---~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  232 LQ---IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             HH---HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            21   11111122233588999999766677777765 679999985

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.44  E-value=0.00034  Score=57.65  Aligned_cols=230  Identities=9%  Similarity=0.071  Sum_probs=117.9

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcc-cccccc-----------------------cccc-CCccceEEEe
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY-DVNACS-----------------------LAKD-QDSYEASLVV  116 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~-----------------------~~~~-~~~~~~~~~~  116 (304)
                      .|+.+.|+++..-|+.|...|.|.||.+..++... ......                       .... .........+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            48999999998889999999999999876543321 000000                       0000 1112222222


Q ss_pred             -ecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccc---ccccccceEEEEECC-----CC--
Q 022019          117 -TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD---AVDEITAAFSVAFNP-----TG--  185 (304)
Q Consensus       117 -~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~v~~i~~~~-----~~--  185 (304)
                       ....+|++++.       | |=.++++|..+|.+.|.|++....+..-....   .......++++.|.-     |+  
T Consensus        83 ~~~~g~vtal~~-------S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   83 DAKQGPVTALKN-------S-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             ---S-SEEEEEE---------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             eccCCcEeEEec-------C-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence             22456776664       2 44579999999999999998887766533322   111233577777752     33  


Q ss_pred             -cEEEEE-cCCeEEEEEcCC-CCccceeeeeeeccccccccceeEEE-eecCC-------------------CcEEEEEe
Q 022019          186 -TKIFAG-YNKSVRVFDVHR-PGRDFEKYSTLKGNKEGQAGIMSAIA-FSPTH-------------------TGMLAIGS  242 (304)
Q Consensus       186 -~~l~~~-~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~-~~p~~-------------------~~~l~~~~  242 (304)
                       -.+++| ..|.+.+|.+.- .+..+.  ..+......+.+++..+. |+.+.                   -.-+++..
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~--v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv  232 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFS--VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV  232 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EE--EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceE--EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence             344466 889999998852 111111  111111123344444443 32211                   01234444


Q ss_pred             cCCeEEEEecCCceEeEEeccccCCeEEEEE-----CCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          243 YSQTSAIYREDNMELLYVLHGQEGGVTHVQF-----SRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       243 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      .+..++++...+.+.........-....+.+     ...+..|++-. .+|.|+++.+-.-+.+.
T Consensus       233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~Lkei~  296 (395)
T PF08596_consen  233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSLKEIK  296 (395)
T ss_dssp             -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--EEE
T ss_pred             cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCchHhh
Confidence            5678999999887765554422223334444     23566677777 89999999998776653

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.43  E-value=5.3e-06  Score=71.97  Aligned_cols=151  Identities=11%  Similarity=0.101  Sum_probs=103.9

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      .|+-|+.  ++++|.+|...|+|.+-|..+.+...++.                 .|...+.++         +-.|++|
T Consensus       179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-----------------aHs~siSDf---------Dv~GNlL  230 (1118)
T KOG1275|consen  179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD-----------------AHSGSISDF---------DVQGNLL  230 (1118)
T ss_pred             ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee-----------------ccccceeee---------eccCCeE
Confidence            3555554  57899999999999999988665544333                 344556555         4478899


Q ss_pred             EEEeC---------CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC--CcEEEEEcCCeEEEEEcCCCCcccee
Q 022019          142 ASTTR---------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAGYNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       142 ~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~d~~i~v~d~~~~~~~~~~  210 (304)
                      ++++.         |.-|+|||++.-+.+.-+..+..      ..-+.|+|.  .+.++++..|...+-|....+.+...
T Consensus       231 itCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~------P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~  304 (1118)
T KOG1275|consen  231 ITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG------PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAG  304 (1118)
T ss_pred             EEeecccccccccccchhhhhhhhhhhccCCcccccC------chhhhhcccccceEEEEecccceeeccccccCCCccc
Confidence            98876         55689999998776655554442      245778885  33444679999999995443333222


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEe
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  251 (304)
                      ....    ......+.++++++ ++..++.|..+|.|.+|.
T Consensus       305 ~~~v----~p~~s~i~~fDiSs-n~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  305 VKMV----NPNGSGISAFDISS-NGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeEE----ccCCCcceeEEecC-CCceEEEecccCcEeeec
Confidence            2221    22334489999999 888999999999999997

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.42  E-value=5.6e-05  Score=62.15  Aligned_cols=223  Identities=13%  Similarity=0.137  Sum_probs=113.9

Q ss_pred             cceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC
Q 022019           50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (304)
Q Consensus        50 ~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (304)
                      +.+...+....++|++++.|.=| ++|.|..+|.+.|.|++.....+......         ..........++++.|..
T Consensus        76 f~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~---------~~~~~~~~~~vt~ieF~v  145 (395)
T PF08596_consen   76 FLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE---------SFLSKSSSSYVTSIEFSV  145 (395)
T ss_dssp             EEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG-----------T-SS----EEEEEEEE
T ss_pred             cCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc---------cccccccccCeeEEEEEE
Confidence            34445666679999999998544 99999999999999998766544422211         001111224556666654


Q ss_pred             ccceeCCCc---cEEEEEeCCCCEEEEEcC-C--CeeeEEeecccccccccceEEEE-ECCC-C----------------
Q 022019          130 HMSASDPTS---CVFASTTRDHPIHLWDAT-T--GLLRCTYRAYDAVDEITAAFSVA-FNPT-G----------------  185 (304)
Q Consensus       130 ~~~~~~~~~---~~l~~~~~dg~i~i~d~~-~--~~~~~~~~~~~~~~~~~~v~~i~-~~~~-~----------------  185 (304)
                      ...  ..|+   -.+++|...|.+.+|.+. .  +.....+.... ..+...|..|. ++.+ |                
T Consensus       146 m~~--~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g  222 (395)
T PF08596_consen  146 MTL--GGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQGLSKG  222 (395)
T ss_dssp             EE---TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred             Eec--CCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhccccC
Confidence            222  2232   468889999999999875 1  21111111111 01112333333 3221 1                


Q ss_pred             ----cEEEEEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEee----cCCCcEEEEEecCCeEEEEecCCceE
Q 022019          186 ----TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS----PTHTGMLAIGSYSQTSAIYREDNMEL  257 (304)
Q Consensus       186 ----~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~l~~~~~dg~i~i~d~~~~~~  257 (304)
                          .++++..+..++++..-+.....+   .+     ........+.+-    ...+..|++-..+|.|++|.+-..+.
T Consensus       223 ~~i~g~vVvvSe~~irv~~~~~~k~~~K---~~-----~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke  294 (395)
T PF08596_consen  223 ISIPGYVVVVSESDIRVFKPPKSKGAHK---SF-----DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE  294 (395)
T ss_dssp             ----EEEEEE-SSEEEEE-TT---EEEE---E------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred             CCcCcEEEEEcccceEEEeCCCCcccce---ee-----ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence                245566788899998865321111   11     111112333442    11566788889999999999999988


Q ss_pred             eEEecccc----CCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          258 LYVLHGQE----GGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       258 ~~~~~~~~----~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      +..+....    ..+....++++|..++-.+  ...+.++.+
T Consensus       295 i~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g--psE~~l~sv  334 (395)
T PF08596_consen  295 IKSVSLPPPLDSRRLSSSSISRNGDIFYWTG--PSEIQLFSV  334 (395)
T ss_dssp             EEEEE-SS---HHHHTT-EE-TTS-EEEE-S--SSEEEEEEE
T ss_pred             hhcccCCCccccccccccEECCCCCEEEEeC--cccEEEEEE
Confidence            88776432    2455677899999887776  444444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.41  E-value=1.6e-05  Score=65.97  Aligned_cols=152  Identities=19%  Similarity=0.211  Sum_probs=93.3

Q ss_pred             ceeCCCccEEEEEe---CC-CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCe--EEEEEcCC
Q 022019          132 SASDPTSCVFASTT---RD-HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKS--VRVFDVHR  203 (304)
Q Consensus       132 ~~~~~~~~~l~~~~---~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~--i~v~d~~~  203 (304)
                      .+++|++..++..+   .. ..++++++.+++.........      .-...+|+|||+.++ +. .||.  |+++|+..
T Consensus       198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g------~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~  271 (425)
T COG0823         198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG------NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG  271 (425)
T ss_pred             cccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC------ccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence            34577777655542   22 358999999887666555333      233678999999999 54 6665  56666665


Q ss_pred             CCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCe--EEEEecCCceEeEEeccccCCeEEEEECCCCcEEE
Q 022019          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  281 (304)
                      ..  .   ..+    ....+.-+.-.|+|++..++++.+..|.  |.++|.+.... ..+......-....|+|||++|+
T Consensus       272 ~~--~---~~L----t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~  341 (425)
T COG0823         272 KN--L---PRL----TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIV  341 (425)
T ss_pred             Cc--c---eec----ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEE
Confidence            32  1   111    1122223366899966666666666665  66667765554 33332233223788999999998


Q ss_pred             EeeccCCe--EEEEecccce
Q 022019          282 TGGRKDPY--ILCWDLRKAV  299 (304)
Q Consensus       282 ~~~~~d~~--i~vwd~~~~~  299 (304)
                      ..+..+|.  |.+.|+.++.
T Consensus       342 ~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         342 FESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             EEeccCCceeeEEeccCCCC
Confidence            88733455  6666665543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.37  E-value=4.5e-06  Score=70.79  Aligned_cols=158  Identities=14%  Similarity=0.211  Sum_probs=111.7

Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCC-eeeEEeecccccccccceEEEEECCCC--cEEEEE-cCCeEEEEEcCCCCccce
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                      ++|.|+-++.++.-| +.+-|+... .+..-+. |..   .-.|-.+.|+|..  .+-+++ ....-.+|++....... 
T Consensus        32 i~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~t---pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a-  105 (1081)
T KOG0309|consen   32 INPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HIT---PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA-  105 (1081)
T ss_pred             eccccchhhhhhhcC-eEEEeccCCCCCceeee-ccC---cchhcceecccCCCCceeEEecCcchhhhhhhhcCCccc-
Confidence            477888899888877 677777643 2222221 111   1145677888753  344444 66677789887643322 


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce-EeEEeccccCCeEEEEECCCCcEEEEeeccCC
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP  288 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~  288 (304)
                          +.....+|...++.+.|+|+...++++++.|-.+..||+++.. ++..+..-......+.|+-....+.+.+ ..+
T Consensus       106 ----Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass-hg~  180 (1081)
T KOG0309|consen  106 ----IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS-HGN  180 (1081)
T ss_pred             ----eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc-cCC
Confidence                2222367889999999999999999999999999999999854 6766665566678899987666666666 678


Q ss_pred             eEEEEecccceeee
Q 022019          289 YILCWDLRKAVQVV  302 (304)
Q Consensus       289 ~i~vwd~~~~~~~~  302 (304)
                      .|++||++.|...+
T Consensus       181 ~i~vwd~r~gs~pl  194 (1081)
T KOG0309|consen  181 DIFVWDLRKGSTPL  194 (1081)
T ss_pred             ceEEEeccCCCcce
Confidence            89999999876543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.36  E-value=0.0001  Score=47.97  Aligned_cols=92  Identities=16%  Similarity=0.177  Sum_probs=61.0

Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccc
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                      +.|++|+.|..|++|+-  .+.+..+....      .|.++.-...+++.++-.+|+|-+|+-..      .+...+   
T Consensus        16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~------~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~------RlWRiK---   78 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKG--DEIVAEITETD------KVTSLCSLGGGRFAYALANGTVGVYDRSQ------RLWRIK---   78 (111)
T ss_pred             ceEEEecCCcEEEEEeC--CcEEEEEeccc------ceEEEEEcCCCEEEEEecCCEEEEEeCcc------eeeeec---
Confidence            57999999999999974  45666666554      77888877776655566999999998643      112221   


Q ss_pred             cccccceeEEEee---cCCCcEEEEEecCCeEEE
Q 022019          219 EGQAGIMSAIAFS---PTHTGMLAIGSYSQTSAI  249 (304)
Q Consensus       219 ~~~~~~v~~~~~~---p~~~~~l~~~~~dg~i~i  249 (304)
                      .  ...+.++.+.   .++-.-|++|-.+|.|-+
T Consensus        79 S--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   79 S--KNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             c--CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            1  1124455443   334457889999998743

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=6.1e-06  Score=68.71  Aligned_cols=76  Identities=24%  Similarity=0.288  Sum_probs=68.2

Q ss_pred             ceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeE-EEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT-HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       224 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      .+.-+.|+| ...++|.+..+|.|.+..+. .+.+.++..|...++ +++|.|||+.|+.|- .||+|++-|+.++..+.
T Consensus        22 ~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~-kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   22 NIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGF-KDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEe-cCCeEEEEEccCCCcee
Confidence            377899999 88899999999999999987 888888987777777 999999999999999 99999999999987664

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.24  E-value=0.00016  Score=60.38  Aligned_cols=146  Identities=13%  Similarity=0.150  Sum_probs=80.4

Q ss_pred             EEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEc
Q 022019          122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDV  201 (304)
Q Consensus       122 v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~  201 (304)
                      .......|..+.++|+|+.++++ .||.-.++.....+...  .+        ....+.|.+.+++.+....+.|.++.-
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~--~G--------~g~~~vw~~~n~yAv~~~~~~I~I~kn   96 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA--FG--------SGLSFVWSSRNRYAVLESSSTIKIYKN   96 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE--EE--------E-SEEEE-TSSEEEEE-TTS-EEEEET
T ss_pred             CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc--cC--------ceeEEEEecCccEEEEECCCeEEEEEc
Confidence            33445557777789999998884 57778888743333222  11        345789999776555557888999732


Q ss_pred             CCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEE
Q 022019          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  281 (304)
                      -.. ...+.+.      .  ...+..+-  +  |.+|+..+ ++.|.+||..+++.+..+...  +|..+.|+++|.+++
T Consensus        97 ~~~-~~~k~i~------~--~~~~~~If--~--G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~va  160 (443)
T PF04053_consen   97 FKN-EVVKSIK------L--PFSVEKIF--G--GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVA  160 (443)
T ss_dssp             TEE--TT-------------SS-EEEEE-----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEE
T ss_pred             Ccc-ccceEEc------C--CcccceEE--c--CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEE
Confidence            211 1101110      0  01122222  2  44555554 458999999999999999843  389999999999999


Q ss_pred             EeeccCCeEEEEecc
Q 022019          282 TGGRKDPYILCWDLR  296 (304)
Q Consensus       282 ~~~~~d~~i~vwd~~  296 (304)
                      ..+ .+ .+.+++..
T Consensus       161 l~t-~~-~i~il~~~  173 (443)
T PF04053_consen  161 LVT-KD-SIYILKYN  173 (443)
T ss_dssp             EE--S--SEEEEEE-
T ss_pred             EEe-CC-eEEEEEec
Confidence            998 44 57776653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.22  E-value=2e-05  Score=68.22  Aligned_cols=103  Identities=16%  Similarity=0.187  Sum_probs=76.6

Q ss_pred             CCCccEEEEEe----CCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          135 DPTSCVFASTT----RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       135 ~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                      +|...+|++++    ..|+|.||- ++|++......+      ..+++++|+|..-.|+.| .-|.+.+|.....     
T Consensus        24 HPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P------~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~-----   91 (1416)
T KOG3617|consen   24 HPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP------VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-----   91 (1416)
T ss_pred             CCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc------eehhhhccChHHHHHhhccccceeEEEecCCc-----
Confidence            45555676664    368888885 567654333222      256789999998888888 8899999998762     


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~  253 (304)
                         ........|..+|..+.||| +|..++++..-|.+.+|...
T Consensus        92 ---e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   92 ---ETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ---eeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence               22222367888999999999 77799999999999999765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.20  E-value=0.00015  Score=62.93  Aligned_cols=155  Identities=12%  Similarity=0.163  Sum_probs=98.4

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccc-eEEEEECCCCcEEE-EEcC-C----eEEEEEcCCCCcc
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITA-AFSVAFNPTGTKIF-AGYN-K----SVRVFDVHRPGRD  207 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~-~~~d-~----~i~v~d~~~~~~~  207 (304)
                      ++.+..++.|+.+|.|.+.+- +-+....+.....     . |..+....+..+|+ .|.| +    .++|||++.....
T Consensus        32 ~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~-----siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   32 SSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQ-----SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             cCCCceEEEeeccccEEEecc-cceeeehheecch-----hhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            778889999999998888873 2333344544433     3 44444444445666 5633 3    6999999864211


Q ss_pred             --ceee---eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC----CceEeEEeccccCCeEEEEECCCCc
Q 022019          208 --FEKY---STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED----NMELLYVLHGQEGGVTHVQFSRDGN  278 (304)
Q Consensus       208 --~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~  278 (304)
                        ...+   ............++.+++.+. +-..+++|-.||.|..+.-+    .+....-......+|+.+.+..++.
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~  184 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK  184 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence              2222   122212233467788999998 57789999999999998532    1222222223467899999999988


Q ss_pred             EEEEeeccCCeEEEEeccc
Q 022019          279 YLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       279 ~l~~~~~~d~~i~vwd~~~  297 (304)
                      .++.+. .-..|.+|.+..
T Consensus       185 s~lFv~-Tt~~V~~y~l~g  202 (933)
T KOG2114|consen  185 SVLFVA-TTEQVMLYSLSG  202 (933)
T ss_pred             eeEEEE-ecceeEEEEecC
Confidence            744344 466789998874

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.18  E-value=0.00085  Score=57.47  Aligned_cols=151  Identities=16%  Similarity=0.078  Sum_probs=92.7

Q ss_pred             eCCCccEEEEE-eCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEc--------------------
Q 022019          134 SDPTSCVFAST-TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY--------------------  192 (304)
Q Consensus       134 ~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--------------------  192 (304)
                      ++|+|+.+... -..+.+.+.|..+.+...++....      ....++++|+|++++++.                    
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg------npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~  273 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG------NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWV  273 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC------CcccceECCCCCEEEEeccCcccCcceeeeccccCceE
Confidence            36677665433 335677888888777666665543      334567777777776331                    


Q ss_pred             ---------------------CCeEEEEEcCCCCc-cceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEE
Q 022019          193 ---------------------NKSVRVFDVHRPGR-DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY  250 (304)
Q Consensus       193 ---------------------d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~  250 (304)
                                           ++.|.+.|.++... .......+.     -......+.++||+..+++++..+.+|.|+
T Consensus       274 vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-----VGKsPHGV~vSPDGkylyVanklS~tVSVI  348 (635)
T PRK02888        274 VVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-----VPKNPHGVNTSPDGKYFIANGKLSPTVTVI  348 (635)
T ss_pred             EEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-----CCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence                                 23455555544100 001111111     112256799999666666666779999999


Q ss_pred             ecCCceE------------eEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          251 REDNMEL------------LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       251 d~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      |+.+.+.            +.+..... .-...+|.++|....|-- -|..|..||+.+
T Consensus       349 Dv~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf-~dsqv~kwn~~~  405 (635)
T PRK02888        349 DVRKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLF-LDSQIVKWNIEA  405 (635)
T ss_pred             EChhhhhhhhccCCccceEEEeeccCC-CcceEEECCCCCEEEeEe-ecceeEEEehHH
Confidence            9987542            33444322 345688999998666666 899999999986

>smart00320 WD40 WD40 repeats

Probab=98.16  E-value=7.7e-06  Score=42.54  Aligned_cols=36  Identities=22%  Similarity=0.477  Sum_probs=32.1

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEee
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFS   88 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd   88 (304)
                      ...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345668899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=98.16  E-value=1.1e-05  Score=41.98  Aligned_cols=39  Identities=49%  Similarity=0.732  Sum_probs=34.4

Q ss_pred             ceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       255 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      ++++..+..|...|.++.|++++.++++++ .|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASAS-DDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEec-CCCeEEEcC
Confidence            356667778889999999999999999999 999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.15  E-value=0.00063  Score=56.75  Aligned_cols=201  Identities=9%  Similarity=0.084  Sum_probs=103.2

Q ss_pred             CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCE
Q 022019           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI  150 (304)
Q Consensus        71 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i  150 (304)
                      .+..+++++.+|.+.-+|..+++..........    ...   ........+   .-.|   .  -.+..++.++.+|.+
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~----~~~---~~~~~~~~~---~~~~---~--v~~~~v~v~~~~g~l  132 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEK----DGW---FSKNKSALL---SGGV---T--VAGGKVYIGSEKGQV  132 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCc----ccc---ccccccccc---cccc---E--EECCEEEEEcCCCEE
Confidence            455777788889999999988876544322110    000   000000000   0000   0  134467778889999


Q ss_pred             EEEEcCCCeeeEEeecccccccccceEE-EEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeec-cccccccceeEE
Q 022019          151 HLWDATTGLLRCTYRAYDAVDEITAAFS-VAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG-NKEGQAGIMSAI  228 (304)
Q Consensus       151 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~v~~~  228 (304)
                      +.+|.++|+..........      +.+ .... ++..++...++.+.-+|..++............ ...+...+    
T Consensus       133 ~ald~~tG~~~W~~~~~~~------~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP----  201 (394)
T PRK11138        133 YALNAEDGEVAWQTKVAGE------ALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAP----  201 (394)
T ss_pred             EEEECCCCCCcccccCCCc------eecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCC----
Confidence            9999999998776655431      111 1111 344444458899999999876432221100000 00001111    


Q ss_pred             EeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC-------CeEEEEECC--CCcEEEEeeccCCeEEEEecccce
Q 022019          229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG-------GVTHVQFSR--DGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       229 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      ...  ++ .++.++.+|.+..+|..+++.+........       ....+.-+|  .+..++.++ .+|.+..+|..+|+
T Consensus       202 ~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~  277 (394)
T PRK11138        202 ATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQ  277 (394)
T ss_pred             EEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCC
Confidence            111  22 466677889999899888876544321100       000111112  234555555 67777777777765


Q ss_pred             ee
Q 022019          300 QV  301 (304)
Q Consensus       300 ~~  301 (304)
                      .+
T Consensus       278 ~~  279 (394)
T PRK11138        278 IV  279 (394)
T ss_pred             EE
Confidence            43

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.15  E-value=0.0018  Score=51.49  Aligned_cols=106  Identities=16%  Similarity=0.245  Sum_probs=68.5

Q ss_pred             ceEEEEECCCCcEEEEE--cCCeEEEEEcCC-CCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC-eEEEE
Q 022019          175 AAFSVAFNPTGTKIFAG--YNKSVRVFDVHR-PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-TSAIY  250 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~--~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~i~  250 (304)
                      .-++|+||||++.++..  ..+.|.-|++.. ............  .....+..-.++... ++.+.+++..+| .|..|
T Consensus       164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~--~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~  240 (307)
T COG3386         164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD--FDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRF  240 (307)
T ss_pred             ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE--ccCCCCCCCceEEeC-CCCEEEecccCCceEEEE
Confidence            45689999999988855  558888888762 111111100111  111234455677777 565554444444 89999


Q ss_pred             ecCCceEeEEeccccCCeEEEEE-CCCCcEEEEee
Q 022019          251 REDNMELLYVLHGQEGGVTHVQF-SRDGNYLYTGG  284 (304)
Q Consensus       251 d~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~  284 (304)
                      +.. ++++..+......+++++| .|+.+.|+..+
T Consensus       241 ~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         241 NPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             CCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            987 9999888877678899998 45566666655

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.15  E-value=0.0021  Score=53.70  Aligned_cols=135  Identities=12%  Similarity=0.106  Sum_probs=76.6

Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCccceeeeeeecc
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGN  217 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~  217 (304)
                      ..++.++.+|.+..+|+.+|+.........       ...+..  .+..++ ++.++.+..+|..++.....    ... 
T Consensus       257 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~----~~~-  322 (394)
T PRK11138        257 GVVYALAYNGNLVALDLRSGQIVWKREYGS-------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWS----QSD-  322 (394)
T ss_pred             CEEEEEEcCCeEEEEECCCCCEEEeecCCC-------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEc----ccc-
Confidence            345556667777777777776554433211       111111  233444 45788888888866422111    000 


Q ss_pred             ccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeE-EEEECCCCcEEEEeeccCCeEEEEec
Q 022019          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT-HVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       218 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                       ... ....+....  + ..+++++.+|.++..|..+++.+...+.....+. +..+  .+..|+.++ .||.|+.+++
T Consensus       323 -~~~-~~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t-~~G~l~~~~~  393 (394)
T PRK11138        323 -LLH-RLLTAPVLY--N-GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQA-RDGTVYAITR  393 (394)
T ss_pred             -cCC-CcccCCEEE--C-CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEe-CCceEEEEeC
Confidence             000 011122222  2 3677889999999999999998877764333332 2223  244688888 8999988764

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.13  E-value=0.002  Score=49.46  Aligned_cols=202  Identities=12%  Similarity=0.178  Sum_probs=116.4

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      |-...|.++.|+|+.+.|++......-.|+=..++.....+....+                .....+.|       -.+
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~----------------~DpE~Iey-------ig~  139 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF----------------SDPETIEY-------IGG  139 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc----------------CChhHeEE-------ecC
Confidence            4455599999999999888888777777775555544332221110                11111222       345


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeE-----EeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceee
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRC-----TYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                      |++.++--.++.+.++.+..+....     .++.............++|+|.+..+... .-.-+.||.+..........
T Consensus       140 n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~  219 (316)
T COG3204         140 NQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH  219 (316)
T ss_pred             CEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc
Confidence            6666666678888888876553221     22222211113367899999998888876 55667777665432221111


Q ss_pred             eeee--ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC---------CeEEEEECCCCcEE
Q 022019          212 STLK--GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG---------GVTHVQFSRDGNYL  280 (304)
Q Consensus       212 ~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l  280 (304)
                      ....  ....-.-..+.++.|++..+.+|+-+.+++.+.-.|.. +.++..+.-+.+         ..-.++..++|. |
T Consensus       220 ~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-l  297 (316)
T COG3204         220 ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-L  297 (316)
T ss_pred             cccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC-E
Confidence            1100  00011123478899998778888888888988888874 444444432211         234567776665 4


Q ss_pred             EEee
Q 022019          281 YTGG  284 (304)
Q Consensus       281 ~~~~  284 (304)
                      +..|
T Consensus       298 YIvS  301 (316)
T COG3204         298 YIVS  301 (316)
T ss_pred             EEEe
Confidence            4455

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.12  E-value=2.5e-06  Score=73.88  Aligned_cols=147  Identities=15%  Similarity=0.202  Sum_probs=107.3

Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE--c-CCeEEEEEcCCCCccc
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--Y-NKSVRVFDVHRPGRDF  208 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~-d~~i~v~d~~~~~~~~  208 (304)
                      .+|+.+.++|++|+-.|.|++|++.+|........|..     .|+-+.-+.+|..++++  . .--..+|++.....  
T Consensus      1107 ~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S-----avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~-- 1179 (1516)
T KOG1832|consen 1107 IAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS-----AVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG-- 1179 (1516)
T ss_pred             EEeecCCceEEeeeccceEEEEEccCcccccccccccc-----ccccccccCCcceeeeeccccCchHHHhccccccC--
Confidence            45588889999999999999999999998888877765     88999988899888843  2 33578999865221  


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEe-cc---ccCCeEEEEECCCCcEEEEee
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HG---QEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~l~~~~  284 (304)
                           ....+    ..-.++.|+. ....-+.|+.-....+||+.++.++.++ .+   ..-.-+.+.|+|+...++   
T Consensus      1180 -----~~Hsf----~ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--- 1246 (1516)
T KOG1832|consen 1180 -----PRHSF----DEDKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--- 1246 (1516)
T ss_pred             -----ccccc----cccceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---
Confidence                 11111    1245788988 4555566777778999999999877663 32   122336788999999887   


Q ss_pred             ccCCeEEEEecccceee
Q 022019          285 RKDPYILCWDLRKAVQV  301 (304)
Q Consensus       285 ~~d~~i~vwd~~~~~~~  301 (304)
                       .||  .+||++..+.|
T Consensus      1247 -ndG--vLWDvR~~~aI 1260 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAI 1260 (1516)
T ss_pred             -eCc--eeeeeccHHHH
Confidence             455  58999877543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.06  E-value=0.004  Score=51.99  Aligned_cols=57  Identities=11%  Similarity=0.161  Sum_probs=37.4

Q ss_pred             EEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       237 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      ..+....++.+.+.+....+.   +. ..+++..++.||+|++||.-. .+|.+.+....-.
T Consensus       192 ~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t-~~g~l~v~ssDf~  248 (410)
T PF04841_consen  192 VEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFT-DSGNLWVVSSDFS  248 (410)
T ss_pred             eEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEE-CCCCEEEEECccc
Confidence            344444455566444332211   22 246899999999999999998 8899888865443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.04  E-value=0.00026  Score=53.83  Aligned_cols=200  Identities=14%  Similarity=0.113  Sum_probs=105.6

Q ss_pred             EEEcCCCCeEEEecC-----CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccE
Q 022019           66 IKWSPDGSSFLTSSE-----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (304)
Q Consensus        66 i~~s~~~~~l~s~~~-----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (304)
                      =.|||||.+|...-.     -|.|-|||...+-.                       +-......-.-|+.+.+.+||+.
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq-----------------------rvgE~~t~GiGpHev~lm~DGrt  175 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ-----------------------RVGEFSTHGIGPHEVTLMADGRT  175 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEecccccc-----------------------eecccccCCcCcceeEEecCCcE
Confidence            468999998886533     37889999873211                       00111112223344445778888


Q ss_pred             EEEEeC------------------CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCC----eEE
Q 022019          141 FASTTR------------------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK----SVR  197 (304)
Q Consensus       141 l~~~~~------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~----~i~  197 (304)
                      ++.+..                  .-++.+.|..+|+.+........ .+.-.+..++..+||+.++.+ ..|    .--
T Consensus       176 lvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~-l~~lSiRHld~g~dgtvwfgcQy~G~~~d~pp  254 (366)
T COG3490         176 LVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS-LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPP  254 (366)
T ss_pred             EEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh-hhhcceeeeeeCCCCcEEEEEEeeCCCccCCc
Confidence            887643                  11233444445554443333211 122267788888888887743 222    111


Q ss_pred             EEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCC
Q 022019          198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG  277 (304)
Q Consensus       198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  277 (304)
                      +--...+++.++.+.............|-+++.+.+.+...+++=..+..-+||..++..+..-.-.  .+..++-. .+
T Consensus       255 Lvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva~~-~~  331 (366)
T COG3490         255 LVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVAAA-KG  331 (366)
T ss_pred             ceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--ccccceec-cC
Confidence            1112222333333333322223344567889988856655555555667889999999876544311  12222222 23


Q ss_pred             cEEEEeeccCCeEEEEe
Q 022019          278 NYLYTGGRKDPYILCWD  294 (304)
Q Consensus       278 ~~l~~~~~~d~~i~vwd  294 (304)
                      .+.++.  .+|.+.++.
T Consensus       332 gf~vss--g~G~~~~~s  346 (366)
T COG3490         332 GFAVSS--GQGRIIFYS  346 (366)
T ss_pred             ceEEec--CCceEEecc
Confidence            344444  477777664

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.04  E-value=0.0011  Score=55.58  Aligned_cols=176  Identities=11%  Similarity=0.150  Sum_probs=83.6

Q ss_pred             ecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC
Q 022019           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (304)
                      +....-....+.++|+|++++.+ .||.-.|+......                      ......-....|       .
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r----------------------~k~~G~g~~~vw-------~   77 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR----------------------NKAFGSGLSFVW-------S   77 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTE----------------------EEEEEE-SEEEE--------
T ss_pred             CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCc----------------------ccccCceeEEEE-------e
Confidence            33445557899999999998885 47788888732110                      000123334455       4


Q ss_pred             CCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeee
Q 022019          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       136 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      +.+ .+|+-...++|.++.--+.+....+....      .+..|-.   |..|....++.|.+||+.+.    +.+..+ 
T Consensus        78 ~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~~------~~~~If~---G~LL~~~~~~~i~~yDw~~~----~~i~~i-  142 (443)
T PF04053_consen   78 SRN-RYAVLESSSTIKIYKNFKNEVVKSIKLPF------SVEKIFG---GNLLGVKSSDFICFYDWETG----KLIRRI-  142 (443)
T ss_dssp             TSS-EEEEE-TTS-EEEEETTEE-TT-----SS-------EEEEE----SSSEEEEETTEEEEE-TTT------EEEEE-
T ss_pred             cCc-cEEEEECCCeEEEEEcCccccceEEcCCc------ccceEEc---CcEEEEECCCCEEEEEhhHc----ceeeEE-
Confidence            433 46666668889886322222222333221      2233332   88888776778999999863    112221 


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-----------eEeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-----------ELLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                         .  -.+|..+.|++ ++.+++..+.+ .+.|++....           .....+..-...|.+..|..+ -+++|..
T Consensus       143 ---~--v~~vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~  214 (443)
T PF04053_consen  143 ---D--VSAVKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTS  214 (443)
T ss_dssp             ---S--S-E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T
T ss_pred             ---e--cCCCcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcC
Confidence               1  12378899999 66677777654 5666654322           022222222446777777655 4455443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.04  E-value=4.9e-05  Score=64.37  Aligned_cols=114  Identities=19%  Similarity=0.239  Sum_probs=83.1

Q ss_pred             ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC
Q 022019          175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~  253 (304)
                      .|.--+++..+++++.| .-|.+++|+-..+..       ......+..+.+..+..++ ...++|+|+..|.|.++-+.
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-------~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~  106 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-------RKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLN  106 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhh-------hcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhh
Confidence            44445566778999966 889999998655311       1111123445566777888 78899999999999999886


Q ss_pred             CceEe-----EEe-ccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          254 NMELL-----YVL-HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       254 ~~~~~-----~~~-~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      ...+.     ..+ ..|+..|++++|++++..+++|. ..|+|.+-.+..
T Consensus       107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD-~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD-SQGKVVLTELDS  155 (726)
T ss_pred             ccCCCcceeeccccccCCceEEEEEecccccEEeecC-CCceEEEEEech
Confidence            64321     111 13677899999999999999999 999999888776

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.03  E-value=0.0032  Score=48.35  Aligned_cols=166  Identities=10%  Similarity=0.137  Sum_probs=91.4

Q ss_pred             CeEEEEeecCccceeCCC-ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEE
Q 022019          120 ESVYDFCWFPHMSASDPT-SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVR  197 (304)
Q Consensus       120 ~~v~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~  197 (304)
                      ..+..++|       +|+ +.++++....+.|..++. +|+.+..+.....    .....|++..++.++++. .++.+.
T Consensus        22 ~e~SGLTy-------~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~----~D~EgI~y~g~~~~vl~~Er~~~L~   89 (248)
T PF06977_consen   22 DELSGLTY-------NPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF----GDYEGITYLGNGRYVLSEERDQRLY   89 (248)
T ss_dssp             S-EEEEEE-------ETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-----SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred             CCccccEE-------cCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC----CCceeEEEECCCEEEEEEcCCCcEE
Confidence            45788888       445 456777777888888886 4788777776542    256789998888888877 799999


Q ss_pred             EEEcCCCCcccee--eeeeecc-ccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC---ceEe--EEec------c
Q 022019          198 VFDVHRPGRDFEK--YSTLKGN-KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN---MELL--YVLH------G  263 (304)
Q Consensus       198 v~d~~~~~~~~~~--~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~---~~~~--~~~~------~  263 (304)
                      ++++.........  ...+... ...+...+..++|+| .+..|+++-+..-..||.+..   ...+  ....      .
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence            9999543322211  1222211 123445589999999 444555666766677776653   1111  1111      1


Q ss_pred             ccCCeEEEEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       264 ~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      ....+.+++++|....|+.-+..+..|..+| .+|+
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~  203 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGR  203 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTTTEEEEE--TT--
T ss_pred             eeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCC
Confidence            2335788999997655444443777888888 4444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.02  E-value=2.3e-05  Score=67.83  Aligned_cols=108  Identities=16%  Similarity=0.190  Sum_probs=83.3

Q ss_pred             EEEEECCCCcEEEE-E----cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEe
Q 022019          177 FSVAFNPTGTKIFA-G----YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (304)
Q Consensus       177 ~~i~~~~~~~~l~~-~----~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  251 (304)
                      +-.+|+|...++++ +    ..|.|.||-- +++ +...        ....-.+++++|+| ...+|+.|-.-|.+.+|.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tGE-Pqr~--------Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~   87 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TGE-PQRD--------VTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQK   87 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEec-CCC-CCcc--------cccceehhhhccCh-HHHHHhhccccceeEEEe
Confidence            34689999988883 2    4688888853 221 1111        11122367899999 888999999999999999


Q ss_pred             cCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          252 EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       252 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      ..+.+.-.....|..+|..+.|||+|..|+++. .-|.+.+|...
T Consensus        88 ~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d-~~g~v~lwr~d  131 (1416)
T KOG3617|consen   88 TNTTETHTVVETHPAPIQGLDWSHDGTVLMTLD-NPGSVHLWRYD  131 (1416)
T ss_pred             cCCceeeeeccCCCCCceeEEecCCCCeEEEcC-CCceeEEEEee
Confidence            877766666668999999999999999999999 89999999876

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.99  E-value=0.0036  Score=50.66  Aligned_cols=168  Identities=12%  Similarity=0.161  Sum_probs=95.8

Q ss_pred             EEeecCCeEEEEeecCccceeCC----CccEEEEEeC---------C-CCEEEEEcCCC-eeeEEeecccccccccceEE
Q 022019          114 LVVTEGESVYDFCWFPHMSASDP----TSCVFASTTR---------D-HPIHLWDATTG-LLRCTYRAYDAVDEITAAFS  178 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~l~~~~~---------d-g~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~  178 (304)
                      ..+.....+.+++...    +..    ...++++|..         . |.|.++++... .....+..........+|++
T Consensus        18 ~~l~~~E~~~s~~~~~----l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~a   93 (321)
T PF03178_consen   18 FELEPNEHVTSLCSVK----LKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTA   93 (321)
T ss_dssp             EEEETTEEEEEEEEEE----ETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEE
T ss_pred             EECCCCceEEEEEEEE----EcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceE
Confidence            4445555666554421    122    2467777743         2 88999999884 11111111111122237888


Q ss_pred             EEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC-ceE
Q 022019          179 VAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MEL  257 (304)
Q Consensus       179 i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~  257 (304)
                      +.--  +..++++.++.|.+|++.... .+......     .....+.++....   .++++|.....+.++..+. ...
T Consensus        94 i~~~--~~~lv~~~g~~l~v~~l~~~~-~l~~~~~~-----~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~~~~  162 (321)
T PF03178_consen   94 ICSF--NGRLVVAVGNKLYVYDLDNSK-TLLKKAFY-----DSPFYITSLSVFK---NYILVGDAMKSVSLLRYDEENNK  162 (321)
T ss_dssp             EEEE--TTEEEEEETTEEEEEEEETTS-SEEEEEEE------BSSSEEEEEEET---TEEEEEESSSSEEEEEEETTTE-
T ss_pred             hhhh--CCEEEEeecCEEEEEEccCcc-cchhhhee-----cceEEEEEEeccc---cEEEEEEcccCEEEEEEEccCCE
Confidence            7765  445778888999999998743 11111111     1122456665553   3888898888888775432 222


Q ss_pred             eEEec--cccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          258 LYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       258 ~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      +..+.  .....++++.|-+++..++.+. .+|.+.++....
T Consensus       163 l~~va~d~~~~~v~~~~~l~d~~~~i~~D-~~gnl~~l~~~~  203 (321)
T PF03178_consen  163 LILVARDYQPRWVTAAEFLVDEDTIIVGD-KDGNLFVLRYNP  203 (321)
T ss_dssp             EEEEEEESS-BEEEEEEEE-SSSEEEEEE-TTSEEEEEEE-S
T ss_pred             EEEEEecCCCccEEEEEEecCCcEEEEEc-CCCeEEEEEECC
Confidence            22222  2345689999987777888888 999999998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.97  E-value=7e-05  Score=63.46  Aligned_cols=133  Identities=14%  Similarity=0.150  Sum_probs=90.6

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      +..+++++.|+.-|.+++|+-..++.... +...   ....+.....+++..++|+| ..|.|.++-+.........+  
T Consensus        42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~-~~~~---~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~--  115 (726)
T KOG3621|consen   42 DATEEYLAMGSSAGSVYLYNRHTGEMRKL-KNEG---ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY--  115 (726)
T ss_pred             ecCCceEEEecccceEEEEecCchhhhcc-cccC---ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee--
Confidence            55788999999999999999766654332 2211   11256677888888888866 88999999887633222211  


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc----eEeEEeccccCCeEEEEEC
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM----ELLYVLHGQEGGVTHVQFS  274 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~  274 (304)
                      +......|...|++++|++ ++..+++|...|.|..-.+...    .....+-...+.|..+...
T Consensus       116 ~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  116 VTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             eccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            1222234778899999999 8889999999999998887762    1222222334567777665

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=0.0024  Score=52.94  Aligned_cols=159  Identities=17%  Similarity=0.250  Sum_probs=106.3

Q ss_pred             ecCccceeCCCcc-EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-c---CCeEEEEEc
Q 022019          127 WFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y---NKSVRVFDV  201 (304)
Q Consensus       127 ~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~---d~~i~v~d~  201 (304)
                      +.|...++++.+. .++....+..|.+.|..+...........      ....++++|+++.++++ .   ++.+.+.|.
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~  147 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDA  147 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc------CCceEEECCCCCEEEEEecccCCceEEEEeC
Confidence            5566667788887 45555556889999987776665554433      45689999999888854 3   688888887


Q ss_pred             CCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeE-E----eccccCCeEEEEECCC
Q 022019          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY-V----LHGQEGGVTHVQFSRD  276 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~----~~~~~~~v~~~~~~~~  276 (304)
                      .+...    ....   ..+. .+ ..++++|++...+++-..++.|.++|........ .    +.. ...-..+.++|+
T Consensus       148 ~t~~~----~~~~---~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~  217 (381)
T COG3391         148 ATNKV----TATI---PVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPD  217 (381)
T ss_pred             CCCeE----EEEE---ecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECCC
Confidence            65311    1111   1111 22 7899999655566666688999999977665553 1    222 223467899999


Q ss_pred             CcEEEEeeccC--CeEEEEecccceee
Q 022019          277 GNYLYTGGRKD--PYILCWDLRKAVQV  301 (304)
Q Consensus       277 ~~~l~~~~~~d--~~i~vwd~~~~~~~  301 (304)
                      |.+++.....+  +.+...|..++...
T Consensus       218 g~~~yV~~~~~~~~~v~~id~~~~~v~  244 (381)
T COG3391         218 GNRVYVANDGSGSNNVLKIDTATGNVT  244 (381)
T ss_pred             CCEEEEEeccCCCceEEEEeCCCceEE
Confidence            99887776223  58888888876543

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=7.8e-05  Score=62.42  Aligned_cols=93  Identities=16%  Similarity=0.189  Sum_probs=68.4

Q ss_pred             CeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceE-EEEECCCCcEEEEE-cCCeEE
Q 022019          120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAF-SVAFNPTGTKIFAG-YNKSVR  197 (304)
Q Consensus       120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~~~-~d~~i~  197 (304)
                      ..+.-+.|       +|.-.++|.+..+|.|.++.+. -+.+.+++.++.     .++ +++|.|||+.|++| .||+|+
T Consensus        21 ~~i~~~ew-------nP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~-----~v~~sL~W~~DGkllaVg~kdG~I~   87 (665)
T KOG4640|consen   21 INIKRIEW-------NPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGE-----NVTASLCWRPDGKLLAVGFKDGTIR   87 (665)
T ss_pred             cceEEEEE-------cCccchhheeccCCcEEEEEec-cceeEeccCCCC-----ccceeeeecCCCCEEEEEecCCeEE
Confidence            45666777       5667789999999999999987 555666665554     555 99999999999999 999999


Q ss_pred             EEEcCCCCccceeeeeeeccccccccceeEEEeec
Q 022019          198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP  232 (304)
Q Consensus       198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  232 (304)
                      +-|+.++.....       ........|.++-|+|
T Consensus        88 L~Dve~~~~l~~-------~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   88 LHDVEKGGRLVS-------FLFSVETDISKGIWDR  115 (665)
T ss_pred             EEEccCCCceec-------cccccccchheeeccc
Confidence            999988632211       1122344577777765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.95  E-value=0.0067  Score=49.13  Aligned_cols=187  Identities=13%  Similarity=0.104  Sum_probs=101.6

Q ss_pred             CCeEEEecC----------CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           72 GSSFLTSSE----------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        72 ~~~l~s~~~----------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      ..+|+.|+.          .|.|.++++.+...           ...............+|++++-.        ++. |
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~-----------~~~~l~~i~~~~~~g~V~ai~~~--------~~~-l  101 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPE-----------NNFKLKLIHSTEVKGPVTAICSF--------NGR-L  101 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS----------------EEEEEEEEEESS-EEEEEEE--------TTE-E
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccc-----------cceEEEEEEEEeecCcceEhhhh--------CCE-E
Confidence            457777642          28999999886400           00111112233445778887642        344 4


Q ss_pred             EEEeCCCCEEEEEcCCCe-eeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeecccc
Q 022019          142 ASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (304)
Q Consensus       142 ~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~  219 (304)
                      +++. .+.|++|++...+ ....-.....    ..+.++...  ++++++| ....+.++..+.....+..+..     .
T Consensus       102 v~~~-g~~l~v~~l~~~~~l~~~~~~~~~----~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-----d  169 (321)
T PF03178_consen  102 VVAV-GNKLYVYDLDNSKTLLKKAFYDSP----FYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVAR-----D  169 (321)
T ss_dssp             EEEE-TTEEEEEEEETTSSEEEEEEE-BS----SSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE-----E
T ss_pred             EEee-cCEEEEEEccCcccchhhheecce----EEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe-----c
Confidence            4444 4789999998877 4333222221    145555554  5588877 7777888766543222222221     2


Q ss_pred             ccccceeEEEeecCCCcEEEEEecCCeEEEEecCC-------c----eEeEEeccccCCeEEE---EECCC--Cc-----
Q 022019          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-------M----ELLYVLHGQEGGVTHV---QFSRD--GN-----  278 (304)
Q Consensus       220 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-------~----~~~~~~~~~~~~v~~~---~~~~~--~~-----  278 (304)
                      .....++++.|-+++ ..++++..+|.+.++....       +    .....+. ....|+++   .+.|.  +.     
T Consensus       170 ~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~  247 (321)
T PF03178_consen  170 YQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNR  247 (321)
T ss_dssp             SS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEE
T ss_pred             CCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCccccc
Confidence            234558899998645 5889999999999997652       1    2333443 23457777   55552  22     


Q ss_pred             -EEEEeeccCCeEEEE
Q 022019          279 -YLYTGGRKDPYILCW  293 (304)
Q Consensus       279 -~l~~~~~~d~~i~vw  293 (304)
                       .++.++ .+|.|.+.
T Consensus       248 ~~i~~~T-~~G~Ig~l  262 (321)
T PF03178_consen  248 PQILYGT-VDGSIGVL  262 (321)
T ss_dssp             EEEEEEE-TTS-EEEE
T ss_pred             ceEEEEe-cCCEEEEE
Confidence             366666 78888743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.92  E-value=0.0016  Score=42.49  Aligned_cols=99  Identities=23%  Similarity=0.364  Sum_probs=60.5

Q ss_pred             eeEEEEcC---CC-CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           63 LKGIKWSP---DG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        63 V~~i~~s~---~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      |++|++..   || +.|+.|+.|..||+|+-.+                    ..........+..++..        .+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--------------------~~~Ei~e~~~v~~L~~~--------~~   53 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--------------------IVAEITETDKVTSLCSL--------GG   53 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--------------------EEEEEecccceEEEEEc--------CC
Confidence            66777765   33 4799999999999997542                    22344455667777642        23


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEEC---CCC-cEEEEE-cCCeEE
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN---PTG-TKIFAG-YNKSVR  197 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~---~~~-~~l~~~-~d~~i~  197 (304)
                      ..|+.+..+|+|-+|+-...    .++..+..    .+.++.+.   .+| ..|++| .+|.|-
T Consensus        54 ~~F~Y~l~NGTVGvY~~~~R----lWRiKSK~----~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   54 GRFAYALANGTVGVYDRSQR----LWRIKSKN----QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             CEEEEEecCCEEEEEeCcce----eeeeccCC----CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            56999999999999975322    22222211    34444443   333 356677 888764

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.86  E-value=0.0078  Score=53.70  Aligned_cols=61  Identities=13%  Similarity=0.166  Sum_probs=46.4

Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcC
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVH  202 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~  202 (304)
                      ...+||+|+.+|.|++||--..+....++..+     .+|.+|..+.||+++++..+..+.+++..
T Consensus       587 ~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG-----~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  587 EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLG-----DPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             CCceEEEEeCCCcEEeecccchhhhhcCCCCC-----CCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence            33469999999999999943322222333333     39999999999999999889999999874

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.82  E-value=0.011  Score=51.71  Aligned_cols=112  Identities=9%  Similarity=0.065  Sum_probs=59.5

Q ss_pred             ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC
Q 022019          175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  254 (304)
                      .|..+.|+|||..++.-.++.|++--+.....-...+........+....+.++.|.+ ++.++ ++..++...+|.+.-
T Consensus       449 ~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v~v  526 (591)
T PRK13616        449 PISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYVNL  526 (591)
T ss_pred             CcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec-CCEEE-EEecCCCCceEEEec
Confidence            7899999999999995546777773332211111122111111122333457899999 55544 555555444454332


Q ss_pred             -ceEeEEecc--ccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          255 -MELLYVLHG--QEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       255 -~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                       +.....+..  ....+.+++=+++  .|+.+. .+|.+.
T Consensus       527 DG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~-~~g~~~  563 (591)
T PRK13616        527 DGSNSDALPSRNLSAPVVAVAASPS--TVYVTD-ARAVLQ  563 (591)
T ss_pred             CCccccccCCCCccCceEEEecCCc--eEEEEc-CCceEE
Confidence             222112232  2456777777763  355555 566443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.80  E-value=0.0013  Score=54.05  Aligned_cols=64  Identities=13%  Similarity=0.103  Sum_probs=44.8

Q ss_pred             CCCccEEEEE---------eCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCC
Q 022019          135 DPTSCVFAST---------TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP  204 (304)
Q Consensus       135 ~~~~~~l~~~---------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~  204 (304)
                      |||+++++..         +..+.+.+||+.+++........      ..+....|+|+|+.++-..++.|++++...+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~------~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~   73 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPP------PKLQDAKWSPDGKYIAFVRDNNLYLRDLATG   73 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EE------TTBSEEEE-SSSTEEEEEETTEEEEESSTTS
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCc------cccccceeecCCCeeEEEecCceEEEECCCC
Confidence            4566665553         22467899999998765443331      2677999999999999888899999987653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.77  E-value=0.0098  Score=45.61  Aligned_cols=188  Identities=11%  Similarity=0.198  Sum_probs=112.9

Q ss_pred             CCceeEEEEcCCCCeEEEecCCC--eEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      ....-++.|..+|.++-+.+.-|  .|+.+|+.+++.........      .....-....+..++.+.|          
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~------~~FgEGit~~~d~l~qLTW----------  107 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP------RYFGEGITILGDKLYQLTW----------  107 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT------T--EEEEEEETTEEEEEES----------
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc------cccceeEEEECCEEEEEEe----------
Confidence            34556788877888888887766  78999999876533222111      0011111122344555555          


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeec
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~  216 (304)
                              .++...+||..+-+.+.++....      .-+.++  .++..|+.+ ....++++|..+-.. ...+.....
T Consensus       108 --------k~~~~f~yd~~tl~~~~~~~y~~------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~  170 (264)
T PF05096_consen  108 --------KEGTGFVYDPNTLKKIGTFPYPG------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDN  170 (264)
T ss_dssp             --------SSSEEEEEETTTTEEEEEEE-SS------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EET
T ss_pred             --------cCCeEEEEccccceEEEEEecCC------cceEEE--cCCCEEEEECCccceEEECCcccce-EEEEEEEEC
Confidence                    68889999999988888877653      446676  456777755 888999999765321 111111111


Q ss_pred             cccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc------------c---cCCeEEEEECCCCcEEE
Q 022019          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG------------Q---EGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       217 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------~---~~~v~~~~~~~~~~~l~  281 (304)
                        ...-..+..+.|-  ++.++|=.=....|...|..+|+.+..+.-            .   ..-.+.++|.|....|+
T Consensus       171 --g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~  246 (264)
T PF05096_consen  171 --GRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLF  246 (264)
T ss_dssp             --TEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEE
T ss_pred             --CEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEE
Confidence              1122346677776  466777676778899999999988776531            0   23589999998877776


Q ss_pred             Eee
Q 022019          282 TGG  284 (304)
Q Consensus       282 ~~~  284 (304)
                      ..|
T Consensus       247 vTG  249 (264)
T PF05096_consen  247 VTG  249 (264)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            666

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.68  E-value=0.0032  Score=53.07  Aligned_cols=120  Identities=13%  Similarity=0.168  Sum_probs=73.7

Q ss_pred             ceEEEEECCCC-----cEEEEEcCCeEEEEEcCCCCccceee--eeeeccccccccceeEEEeecCCCcEEEEEecCCeE
Q 022019          175 AAFSVAFNPTG-----TKIFAGYNKSVRVFDVHRPGRDFEKY--STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTS  247 (304)
Q Consensus       175 ~v~~i~~~~~~-----~~l~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i  247 (304)
                      .|.++.|.|-+     .+||+-....|.||.+.........+  ...-...+...--...+.|+| ...+|++-.....-
T Consensus        58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvS  136 (671)
T PF15390_consen   58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVS  136 (671)
T ss_pred             eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCcee
Confidence            78899999853     56778899999999986322111110  011011111122245789999 67777776665554


Q ss_pred             EEEecCC--ceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          248 AIYREDN--MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       248 ~i~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      .+++.+.  ......++ ..+-|.|.+|.+||+.|+.+-...=.-++||-.
T Consensus       137 V~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            5666543  33334454 467899999999999887665133345677643

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.67  E-value=0.013  Score=44.28  Aligned_cols=101  Identities=9%  Similarity=0.064  Sum_probs=68.0

Q ss_pred             CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEE
Q 022019           73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHL  152 (304)
Q Consensus        73 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  152 (304)
                      .+++.|+..+.+.--|..++....+...                  +..+.+-+.     .   -|+.++.|...|.+++
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~il------------------g~RiE~sa~-----v---vgdfVV~GCy~g~lYf   77 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL------------------GVRIECSAI-----V---VGDFVVLGCYSGGLYF   77 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhh------------------CceeeeeeE-----E---ECCEEEEEEccCcEEE
Confidence            4677778888888878776654322111                  111111110     0   2457999999999999


Q ss_pred             EEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCC
Q 022019          153 WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP  204 (304)
Q Consensus       153 ~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~  204 (304)
                      .+.++|+....+......     =.....++++..|++| .|++.+..|.++.
T Consensus        78 l~~~tGs~~w~f~~~~~v-----k~~a~~d~~~glIycgshd~~~yalD~~~~  125 (354)
T KOG4649|consen   78 LCVKTGSQIWNFVILETV-----KVRAQCDFDGGLIYCGSHDGNFYALDPKTY  125 (354)
T ss_pred             EEecchhheeeeeehhhh-----ccceEEcCCCceEEEecCCCcEEEeccccc
Confidence            999999877766655431     1245567889999976 9999999999874

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.60  E-value=0.00028  Score=51.90  Aligned_cols=141  Identities=11%  Similarity=0.141  Sum_probs=84.6

Q ss_pred             EEEEeCCCCEEEEEcCCCeeeEEee-cccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccc
Q 022019          141 FASTTRDHPIHLWDATTGLLRCTYR-AYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       141 l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                      +...+.||.|.-++++..+....-. .+.      ..  ...-.-+..+++| .+|.|++|.....+.-....       
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~------e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~-------   97 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFID------EG--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRV-------   97 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhh------cc--eeecccCceEEeecccceEEEecCCccchHHHhh-------
Confidence            5555678888888876543221111 111      11  1111234556655 99999999986322111111       


Q ss_pred             cccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc-CCeEEEEECCCCcEEEEe--eccCCeEEEEec
Q 022019          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQFSRDGNYLYTG--GRKDPYILCWDL  295 (304)
Q Consensus       219 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~~d~~i~vwd~  295 (304)
                      ......+.++--.-+.+.+.++++.||.|+.|++.-.+.+.....|. .++..+..+..+++|..+  + .|..++.|++
T Consensus        98 ~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S-~d~~~k~W~v  176 (238)
T KOG2444|consen   98 CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTS-HDRVLKKWNV  176 (238)
T ss_pred             hcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccc-cchhhhhcch
Confidence            11112222222222244588999999999999999888887777777 566666666667777777  6 7888888887


Q ss_pred             cc
Q 022019          296 RK  297 (304)
Q Consensus       296 ~~  297 (304)
                      ..
T Consensus       177 e~  178 (238)
T KOG2444|consen  177 EK  178 (238)
T ss_pred             hh
Confidence            64

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.58  E-value=0.025  Score=45.10  Aligned_cols=141  Identities=15%  Similarity=0.132  Sum_probs=81.7

Q ss_pred             EEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcC------------CeEEEEEcCCCCccceeeeeeecc
Q 022019          150 IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN------------KSVRVFDVHRPGRDFEKYSTLKGN  217 (304)
Q Consensus       150 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d------------~~i~v~d~~~~~~~~~~~~~~~~~  217 (304)
                      +.+++.+++.....+............+.....|+|.+.++...            |.++.+|..  +...+..      
T Consensus        87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~--g~~~~l~------  158 (307)
T COG3386          87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD--GGVVRLL------  158 (307)
T ss_pred             cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC--CCEEEee------
Confidence            67777766655333322222122236678899999998885422            334444431  1111111      


Q ss_pred             ccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC--c----e-EeEEeccccCCeEEEEECCCCcEEEEeeccCC-e
Q 022019          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--M----E-LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP-Y  289 (304)
Q Consensus       218 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--~----~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~-~  289 (304)
                       ..+-...+.++|||++..++++=+..+.|+-|++..  +    + ....+....+..-.++...+|.+-+++. .+| .
T Consensus       159 -~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~-~~g~~  236 (307)
T COG3386         159 -DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV-WGGGR  236 (307)
T ss_pred             -cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc-cCCce
Confidence             222334578999996666666666678899888752  1    1 1222223345566778888888765554 444 8


Q ss_pred             EEEEecccceee
Q 022019          290 ILCWDLRKAVQV  301 (304)
Q Consensus       290 i~vwd~~~~~~~  301 (304)
                      |.+|+.. |+.+
T Consensus       237 v~~~~pd-G~l~  247 (307)
T COG3386         237 VVRFNPD-GKLL  247 (307)
T ss_pred             EEEECCC-CcEE
Confidence            9999988 6554

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.55  E-value=0.044  Score=47.18  Aligned_cols=211  Identities=13%  Similarity=0.123  Sum_probs=110.4

Q ss_pred             CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEE
Q 022019           72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH  151 (304)
Q Consensus        72 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  151 (304)
                      +..++.++.++.|.-.|..+++............  .         ....+..     ...++. ++..++.++.++.|+
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~--~---------~~~~~~~-----~g~~~~-~~~~V~v~~~~g~v~  123 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPAD--R---------GCCDVVN-----RGVAYW-DPRKVFFGTFDGRLV  123 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCcc--c---------ccccccc-----CCcEEc-cCCeEEEecCCCeEE
Confidence            4456667778999999998887654433221000  0         0000000     000001 225677788899999


Q ss_pred             EEEcCCCeeeEEeecccccccccceE-EEEECCCCcEEEEE---------cCCeEEEEEcCCCCccceeeeeeec--ccc
Q 022019          152 LWDATTGLLRCTYRAYDAVDEITAAF-SVAFNPTGTKIFAG---------YNKSVRVFDVHRPGRDFEKYSTLKG--NKE  219 (304)
Q Consensus       152 i~d~~~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~~~---------~d~~i~v~d~~~~~~~~~~~~~~~~--~~~  219 (304)
                      -+|.++|+.+..............+. +..+. ++.+++.+         .++.+.-+|..++............  ...
T Consensus       124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~  202 (488)
T cd00216         124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFP  202 (488)
T ss_pred             EEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCC
Confidence            99999999887766543200000010 11111 23333322         2578888898875433321110000  000


Q ss_pred             c---------cc-c-ceeEEEeecCCCcEEEEEecCC------------------eEEEEecCCceEeEEeccccCCe--
Q 022019          220 G---------QA-G-IMSAIAFSPTHTGMLAIGSYSQ------------------TSAIYREDNMELLYVLHGQEGGV--  268 (304)
Q Consensus       220 ~---------~~-~-~v~~~~~~p~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~v--  268 (304)
                      .         .. . .-...++++ .+..+++++.++                  .|.-+|..+++.+-.+..-....  
T Consensus       203 ~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~  281 (488)
T cd00216         203 TWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWD  281 (488)
T ss_pred             CCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcc
Confidence            0         00 0 011344555 344677776665                  79999999999887764211111  


Q ss_pred             ----EEEEEC----CCCc---EEEEeeccCCeEEEEecccceeee
Q 022019          269 ----THVQFS----RDGN---YLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       269 ----~~~~~~----~~~~---~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                          ....+.    -+|.   .++.++ .+|.+...|.++|+.+-
T Consensus       282 ~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~G~l~ald~~tG~~~W  325 (488)
T cd00216         282 YDGPNQPSLADIKPKDGKPVPAIVHAP-KNGFFYVLDRTTGKLIS  325 (488)
T ss_pred             cccCCCCeEEeccccCCCeeEEEEEEC-CCceEEEEECCCCcEee
Confidence                011111    2343   577787 89999999999997653

The alignment model contains an 8-bladed beta-propeller.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.52  E-value=0.0047  Score=51.31  Aligned_cols=124  Identities=14%  Similarity=0.115  Sum_probs=75.2

Q ss_pred             eecCCCCceeEEEEcCCCC--e-----EEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEee
Q 022019           55 TSSIPNNFLKGIKWSPDGS--S-----FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW  127 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~--~-----l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  127 (304)
                      ..+-|.+ |+-+.+.|+.+  .     -+.|-.|..|.-||.+-.... .+.          .........+....|.+ 
T Consensus       371 EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~----------~~q~kqy~~k~nFsc~a-  437 (644)
T KOG2395|consen  371 EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLA----------VVQSKQYSTKNNFSCFA-  437 (644)
T ss_pred             EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eee----------eeeccccccccccceee-
Confidence            3344555 77777887653  2     233556788888988732210 000          00000011112222221 


Q ss_pred             cCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCC
Q 022019          128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR  203 (304)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~  203 (304)
                             .-...++++|+.+|.|++||--..+....++..+.     +|..|..+.+|++|++..+.++.+.++.-
T Consensus       438 -------TT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~-----~I~hVdvtadGKwil~Tc~tyLlLi~t~~  501 (644)
T KOG2395|consen  438 -------TTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGD-----AIKHVDVTADGKWILATCKTYLLLIDTLI  501 (644)
T ss_pred             -------ecCCceEEEeecCCcEEeehhhhhhhhhcccccCC-----ceeeEEeeccCcEEEEecccEEEEEEEec
Confidence                   12344799999999999999633333344555444     89999999999999998899999988764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.52  E-value=0.029  Score=44.29  Aligned_cols=149  Identities=14%  Similarity=0.071  Sum_probs=87.2

Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeee--
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL--  214 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~--  214 (304)
                      .++.|+.|.++| ++++++.............      .|..+...|+-+.+++=.|+.++++++.............  
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~------~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS------SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEeecc------eEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccc
Confidence            567899999999 9999983222222221111      5889999998878776667999999997643222110000  


Q ss_pred             e----ccccccccceeEEE--eecCCCcEEEEEecCCeEEEEecCCc-----eEeEEeccccCCeEEEEECCCCcEEEEe
Q 022019          215 K----GNKEGQAGIMSAIA--FSPTHTGMLAIGSYSQTSAIYREDNM-----ELLYVLHGQEGGVTHVQFSRDGNYLYTG  283 (304)
Q Consensus       215 ~----~~~~~~~~~v~~~~--~~p~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~  283 (304)
                      .    .........+..++  -.+.+...|+ ......|.+|.....     +...++.. ...+.+++|.  ++.|+.|
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~  154 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVG  154 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEE
Confidence            0    00011122233333  1122333444 444558888877542     45566653 4678999998  5667777


Q ss_pred             eccCCeEEEEecccc
Q 022019          284 GRKDPYILCWDLRKA  298 (304)
Q Consensus       284 ~~~d~~i~vwd~~~~  298 (304)
                      .  .....+.|+.++
T Consensus       155 ~--~~~f~~idl~~~  167 (275)
T PF00780_consen  155 T--SKGFYLIDLNTG  167 (275)
T ss_pred             e--CCceEEEecCCC
Confidence            6  334778888754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.48  E-value=0.033  Score=43.96  Aligned_cols=149  Identities=14%  Similarity=0.188  Sum_probs=79.4

Q ss_pred             CCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCC
Q 022019           70 PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHP  149 (304)
Q Consensus        70 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~  149 (304)
                      ..++.|+.|+.+| +.++++......                  ........|..+...       ++-+.+++-+ |+.
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~------------------~~i~~~~~I~ql~vl-------~~~~~llvLs-d~~   57 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKP------------------TRILKLSSITQLSVL-------PELNLLLVLS-DGQ   57 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccc------------------eeEeecceEEEEEEe-------cccCEEEEEc-CCc
Confidence            3578899999888 888888221110                  111112236666553       3444455444 599


Q ss_pred             EEEEEcCCCeeeEEee---c------ccccccccceEEEE---ECCCCcEEEEEcCCeEEEEEcCCCCccc-eeeeeeec
Q 022019          150 IHLWDATTGLLRCTYR---A------YDAVDEITAAFSVA---FNPTGTKIFAGYNKSVRVFDVHRPGRDF-EKYSTLKG  216 (304)
Q Consensus       150 i~i~d~~~~~~~~~~~---~------~~~~~~~~~v~~i~---~~~~~~~l~~~~d~~i~v~d~~~~~~~~-~~~~~~~~  216 (304)
                      ++++++..-.......   .      .........+..++   -......++++....|.+|........+ .....+. 
T Consensus        58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-  136 (275)
T PF00780_consen   58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-  136 (275)
T ss_pred             cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-
Confidence            9999997644333110   0      00111112344444   2233456667777799999987643333 2333322 


Q ss_pred             cccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC
Q 022019          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (304)
Q Consensus       217 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  254 (304)
                          ....+.+++|.+ +  .++.|..+ ...+.|+.+
T Consensus       137 ----lp~~~~~i~~~~-~--~i~v~~~~-~f~~idl~~  166 (275)
T PF00780_consen  137 ----LPDPPSSIAFLG-N--KICVGTSK-GFYLIDLNT  166 (275)
T ss_pred             ----cCCCcEEEEEeC-C--EEEEEeCC-ceEEEecCC
Confidence                224578888885 2  55556543 355555553

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.47  E-value=0.00058  Score=37.18  Aligned_cols=35  Identities=14%  Similarity=0.263  Sum_probs=30.7

Q ss_pred             cCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       265 ~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      ...|..++|+|....||.+. .+|.|.++.+ +++++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t-~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGT-EDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEE-CCCeEEEEEC-CCcCc
Confidence            34699999999999999999 9999999999 66554

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.47  E-value=0.058  Score=46.48  Aligned_cols=150  Identities=15%  Similarity=0.141  Sum_probs=85.7

Q ss_pred             CCCccEEEEEeCCC------------------CEEEEEcCCCeeeEEeeccccc-----cccc-ceEEEEECCCCc---E
Q 022019          135 DPTSCVFASTTRDH------------------PIHLWDATTGLLRCTYRAYDAV-----DEIT-AAFSVAFNPTGT---K  187 (304)
Q Consensus       135 ~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~-----~~~~-~v~~i~~~~~~~---~  187 (304)
                      ++.+..++.++.++                  .|.-+|..+|+....+......     .... .+..+. .-++.   .
T Consensus       225 d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~  303 (488)
T cd00216         225 DPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPA  303 (488)
T ss_pred             eCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEE
Confidence            33456677776665                  6999999999988776532210     0000 111111 11232   4


Q ss_pred             EEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEE-----------------EecCCeEEE
Q 022019          188 IFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI-----------------GSYSQTSAI  249 (304)
Q Consensus       188 l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-----------------~~~dg~i~i  249 (304)
                      ++++ .+|.+..+|.++++...+....           ...++.+| + .+++.                 ...+|.+.-
T Consensus       304 V~~g~~~G~l~ald~~tG~~~W~~~~~-----------~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~A  370 (488)
T cd00216         304 IVHAPKNGFFYVLDRTTGKLISARPEV-----------EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAA  370 (488)
T ss_pred             EEEECCCceEEEEECCCCcEeeEeEee-----------ccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEE
Confidence            4555 8999999999886433321110           01122333 1 12111                 124678888


Q ss_pred             EecCCceEeEEecccc--------CCe--EEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          250 YREDNMELLYVLHGQE--------GGV--THVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       250 ~d~~~~~~~~~~~~~~--------~~v--~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      .|+.+++.+-+.....        .+.  ..+..  .+..|+.++ .||.|+.+|.++|+.+
T Consensus       371 lD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~-~dG~l~ald~~tG~~l  429 (488)
T cd00216         371 LDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGA-ADGYFRAFDATTGKEL  429 (488)
T ss_pred             EeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEEC-CCCeEEEEECCCCcee
Confidence            8998888776665321        111  12222  467888888 8999999999999765

The alignment model contains an 8-bladed beta-propeller.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.45  E-value=0.026  Score=42.81  Aligned_cols=136  Identities=13%  Similarity=0.067  Sum_probs=84.9

Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeec
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~  216 (304)
                      ..+++.|+..+.+.--|..+|+....-....      .+.+-+.- -|.+++.| ..|.+++.+..+++..... ...  
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f-~~~--   92 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNF-VIL--   92 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCc------eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeee-eeh--
Confidence            3478888889999999999988765433322      22221111 36677766 9999999999886432221 111  


Q ss_pred             cccccccce-eEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          217 NKEGQAGIM-SAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       217 ~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                            +.| ......+ ++.++.+|+.|+..+..|.++..++...+...+...+-+..|-...|+.+. ..|.+.
T Consensus        93 ------~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~-t~G~vl  160 (354)
T KOG4649|consen   93 ------ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI-TAGAVL  160 (354)
T ss_pred             ------hhhccceEEcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEe-ccceEE
Confidence                  111 1233455 566999999999999999999999888775444455556666222333333 344433

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.45  E-value=0.025  Score=46.78  Aligned_cols=149  Identities=13%  Similarity=0.101  Sum_probs=75.2

Q ss_pred             CccceeCCCccEEEEEe-----------CCC-CEEEEEcCC--CeeeEEeecccccccccceEEEEECCCCcEEEEEcCC
Q 022019          129 PHMSASDPTSCVFASTT-----------RDH-PIHLWDATT--GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK  194 (304)
Q Consensus       129 ~~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~  194 (304)
                      |..++++++|+++++-.           ..+ .|.+++-.+  |+...........   .....+++.+++ ++++... 
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l---~~p~Gi~~~~~G-lyV~~~~-   90 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL---SMVTGLAVAVGG-VYVATPP-   90 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC---CCccceeEecCC-EEEeCCC-
Confidence            44456688898877753           223 676665432  3322111111111   145789999988 4444444 


Q ss_pred             eEEEE-EcCCCCccceeeeeeeccccc----cccceeEEEeecCCCcEEEEEec-------------------CCeEEEE
Q 022019          195 SVRVF-DVHRPGRDFEKYSTLKGNKEG----QAGIMSAIAFSPTHTGMLAIGSY-------------------SQTSAIY  250 (304)
Q Consensus       195 ~i~v~-d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~~~-------------------dg~i~i~  250 (304)
                      .|..| |.......-.....+......    +......++|.| ++.++++-+.                   .|.|.-+
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            45434 554322111011111111111    233467899999 5555554331                   1445666


Q ss_pred             ecCCceEeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          251 REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       251 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      |...++....-.++ .....++|+|+|.++++-.
T Consensus       170 ~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       170 NPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence            66554432222333 2347899999998876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.44  E-value=0.033  Score=43.08  Aligned_cols=165  Identities=12%  Similarity=0.100  Sum_probs=103.6

Q ss_pred             CeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEE
Q 022019          120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV  198 (304)
Q Consensus       120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v  198 (304)
                      ..+.++.|       +|+.+.|++......-.++=-..|+.+.+++...-.    ....|.+..+|++.++. .++.+.+
T Consensus        86 ~nvS~LTy-------np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~----DpE~Ieyig~n~fvi~dER~~~l~~  154 (316)
T COG3204          86 ANVSSLTY-------NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS----DPETIEYIGGNQFVIVDERDRALYL  154 (316)
T ss_pred             ccccceee-------CCCcceEEEecCCCceEEEEecCCceEEEecccccC----ChhHeEEecCCEEEEEehhcceEEE
Confidence            34677777       778888888888877777776789998888765532    44578888888888887 8999999


Q ss_pred             EEcCCCCccceeee-ee-eccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEe---EEeccc-------cC
Q 022019          199 FDVHRPGRDFEKYS-TL-KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL---YVLHGQ-------EG  266 (304)
Q Consensus       199 ~d~~~~~~~~~~~~-~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~-------~~  266 (304)
                      +.+........... .+ .............++|+| ..+.|+.+=+-.-+.||........   .....+       -.
T Consensus       155 ~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~  233 (316)
T COG3204         155 FTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL  233 (316)
T ss_pred             EEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence            98876433221111 11 111122245578999999 5556666767677777766432211   111111       12


Q ss_pred             CeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       267 ~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      .|.++.|++....|+.-|..++.+.-.|..
T Consensus       234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         234 DVSGLEFNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             ccccceecCCCCcEEEEecCCceEEEEecC
Confidence            477788887554444444266666666554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.40  E-value=0.045  Score=43.69  Aligned_cols=211  Identities=12%  Similarity=0.105  Sum_probs=116.4

Q ss_pred             eEEEEcCCCCeEEEec----------CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           64 KGIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        64 ~~i~~s~~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      -.+..+|+++.+++++          ..-.|.+||..+.....++.                ++.+.....+ -.+...+
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~----------------iP~k~R~~~~-~~~~~~~  101 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE----------------IPPKPRAQVV-PYKNMFA  101 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE----------------ETTS-B--BS---GGGEE
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe----------------cCCcchheec-ccccceE
Confidence            3467899999887643          33468999998654433222                2211111111 1334456


Q ss_pred             eCCCccEEEEEeC--CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceee
Q 022019          134 SDPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       134 ~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~  211 (304)
                      ++.+++++++...  .-+|.|-|+..++.+..+..++.       ..+-=.++..+...+.||.+.-..+...++.....
T Consensus       102 ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC-------~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen  102 LSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC-------WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             E-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE-------EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             EccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE-------EEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence            6888888777643  45799999999998888877652       12211223345557799999999998655543221


Q ss_pred             eeeecccccccc-ceeEEEeecCCCcEEEEEecCCeEEEEecCCceE--eEEeccc----------cCCeEEEEECCCCc
Q 022019          212 STLKGNKEGQAG-IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL--LYVLHGQ----------EGGVTHVQFSRDGN  278 (304)
Q Consensus       212 ~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~----------~~~v~~~~~~~~~~  278 (304)
                      ..   .+..... .+..-++...++ .++--+.+|.|+-.|+.....  ...+..-          .+.-.-+++++...
T Consensus       175 t~---~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~  250 (342)
T PF06433_consen  175 TK---VFDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG  250 (342)
T ss_dssp             EE---ESSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred             cc---ccCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence            11   2222222 233444555334 444478899999999875542  2222210          12344577877665


Q ss_pred             EEEEee-------ccCC--eEEEEecccceeee
Q 022019          279 YLYTGG-------RKDP--YILCWDLRKAVQVV  302 (304)
Q Consensus       279 ~l~~~~-------~~d~--~i~vwd~~~~~~~~  302 (304)
                      .|+..-       -+|+  .|-++|+.+++++.
T Consensus       251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~  283 (342)
T PF06433_consen  251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA  283 (342)
T ss_dssp             EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEE
T ss_pred             eEEEEecCCCCCCccCCceEEEEEECCCCeEEE
Confidence            555442       0122  47777888887763

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=97.39  E-value=0.035  Score=46.31  Aligned_cols=142  Identities=15%  Similarity=0.184  Sum_probs=94.8

Q ss_pred             EEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCC--------cEEEEEcCCeEEEEEcCCCCccceeee
Q 022019          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--------TKIFAGYNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       141 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--------~~l~~~~d~~i~v~d~~~~~~~~~~~~  212 (304)
                      +..|+....++-.|++.|+.+..+..+..      + -+.|.|+.        +.|+.-.+..|.-.|.|..+..+....
T Consensus       483 ~~dg~~~~kLykmDIErGkvveeW~~~dd------v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         483 YLDGGERDKLYKMDIERGKVVEEWDLKDD------V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             EecCCCcccceeeecccceeeeEeecCCc------c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            44455666788889999999999888763      3 57777753        233332777787788877553322211


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                      ...   ........+..-.  ...++++|+..|.|++||--.-..-..+++-...|..+..+.+|.+|++.+  ...|.+
T Consensus       556 sKd---Y~tKn~Fss~~tT--esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL  628 (776)
T COG5167         556 SKD---YKTKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLL  628 (776)
T ss_pred             ehh---ccccccccccccc--cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEE
Confidence            110   1111122233322  334899999999999999654444556777788899999999999999887  667888


Q ss_pred             Eecc
Q 022019          293 WDLR  296 (304)
Q Consensus       293 wd~~  296 (304)
                      -|++
T Consensus       629 ~d~~  632 (776)
T COG5167         629 TDVP  632 (776)
T ss_pred             Eecc
Confidence            8774

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.38  E-value=0.066  Score=45.15  Aligned_cols=200  Identities=19%  Similarity=0.189  Sum_probs=102.3

Q ss_pred             ceeEEEEcCCCCeEEEe-cCC----CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC
Q 022019           62 FLKGIKWSPDGSSFLTS-SED----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~-~~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (304)
                      .+...+++|+|+++|.+ +..    ..++++|+.+++.....               +..   .....+.|       .+
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~---------------i~~---~~~~~~~W-------~~  179 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG---------------IEN---PKFSSVSW-------SD  179 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE---------------EEE---EESEEEEE-------CT
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc---------------ccc---cccceEEE-------eC
Confidence            34468899999988854 222    45999999876332110               000   11112566       66


Q ss_pred             CccEEEEEeCCC-----------CEEEEEcCCCeee--EEeecccccccccceEEEEECCCCcEEEE--E--cC-CeEEE
Q 022019          137 TSCVFASTTRDH-----------PIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFA--G--YN-KSVRV  198 (304)
Q Consensus       137 ~~~~l~~~~~dg-----------~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~--~--~d-~~i~v  198 (304)
                      +++.|+....+.           .|+.|.+.+....  ..+.....   ......+..++++++++.  .  .+ ..+++
T Consensus       180 d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~---~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~  256 (414)
T PF02897_consen  180 DGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDE---PFWFVSVSRSKDGRYLFISSSSGTSESEVYL  256 (414)
T ss_dssp             TSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTC---TTSEEEEEE-TTSSEEEEEEESSSSEEEEEE
T ss_pred             CCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCC---CcEEEEEEecCcccEEEEEEEccccCCeEEE
Confidence            777666654332           3778887765433  33443332   112568899999999883  2  33 45788


Q ss_pred             EEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec---CCeEEEEecCCceE---eEEeccccCC--eEE
Q 022019          199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQTSAIYREDNMEL---LYVLHGQEGG--VTH  270 (304)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~~---~~~~~~~~~~--v~~  270 (304)
                      .|+............+....   .+....+...  ++.+++....   ++.|.-.++.....   ...+..+...  +..
T Consensus       257 ~d~~~~~~~~~~~~~l~~~~---~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~  331 (414)
T PF02897_consen  257 LDLDDGGSPDAKPKLLSPRE---DGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLED  331 (414)
T ss_dssp             EECCCTTTSS-SEEEEEESS---SS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEE
T ss_pred             EeccccCCCcCCcEEEeCCC---CceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEE
Confidence            88875311111122222111   1222233333  4444444432   45677777776542   2244445553  444


Q ss_pred             EEECCCCcEEEEeeccCC--eEEEEecc
Q 022019          271 VQFSRDGNYLYTGGRKDP--YILCWDLR  296 (304)
Q Consensus       271 ~~~~~~~~~l~~~~~~d~--~i~vwd~~  296 (304)
                      +..  .+.+|+.....++  .|+++++.
T Consensus       332 ~~~--~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  332 VSL--FKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred             EEE--ECCEEEEEEEECCccEEEEEECC
Confidence            444  4555555543555  57888887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.38  E-value=0.00086  Score=36.50  Aligned_cols=31  Identities=16%  Similarity=0.370  Sum_probs=28.5

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCC
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLP   90 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~   90 (304)
                      ...|.+++|+|..++||.++.||.|.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999984

>PHA02713 hypothetical protein; Provisional

Probab=97.37  E-value=0.017  Score=50.41  Aligned_cols=63  Identities=6%  Similarity=0.089  Sum_probs=40.4

Q ss_pred             CCcEEEEEecC------CeEEEEecCC---ceEeEEeccccCCeEEEEECCCCcEEEEeeccCC--eEEEEecccce
Q 022019          234 HTGMLAIGSYS------QTSAIYREDN---MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAV  299 (304)
Q Consensus       234 ~~~~l~~~~~d------g~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~--~i~vwd~~~~~  299 (304)
                      ++.+++.|+.+      ..+..||..+   ++.+..+.........+.+  +|+..++|| .||  .+-.||..+.+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg-~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHC-YESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEee-ecceeehhhcCccccc
Confidence            45677878754      2467899876   3445555443334444444  577778888 788  77788877654

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.35  E-value=0.023  Score=49.71  Aligned_cols=151  Identities=12%  Similarity=0.153  Sum_probs=76.5

Q ss_pred             cceeCCCccEEEEEe------CCC--CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCC--eEEEEE
Q 022019          131 MSASDPTSCVFASTT------RDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK--SVRVFD  200 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~--~i~v~d  200 (304)
                      ..+++|+|+.++...      .|.  .|.+++. .+.. ..+.. ..     ....-.|+|+|..++...++  .+++.+
T Consensus       354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~-----~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GH-----SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CC-----CCCCceECCCCCceEEEecCcceEEEec
Confidence            456789998887765      243  4555554 2222 22221 11     35678999998877743222  233322


Q ss_pred             cCCCCccceeeeeeec-cc-cccccceeEEEeecCCCcEEEEEecCCeEEE---EecCCce-Ee---EEec-cccCCeEE
Q 022019          201 VHRPGRDFEKYSTLKG-NK-EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAI---YREDNME-LL---YVLH-GQEGGVTH  270 (304)
Q Consensus       201 ~~~~~~~~~~~~~~~~-~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i---~d~~~~~-~~---~~~~-~~~~~v~~  270 (304)
                      -...+ ..... .... .. ......|..+.|+||+.+++++.  +|.|++   -....+. .+   ..+. +-...+.+
T Consensus       426 ~~~~g-ql~~~-~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        426 DPATG-QLART-PVDASAVASRVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             cCCCc-eEEEE-eccCchhhhccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence            21110 10000 0000 00 01234699999999555444443  477777   4444443 11   1122 22334688


Q ss_pred             EEECCCCcEEEEeeccCCeEEEEec
Q 022019          271 VQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       271 ~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      +.|.+++..+ .+. .++.-.+|.+
T Consensus       502 l~W~~~~~L~-V~~-~~~~~~v~~v  524 (591)
T PRK13616        502 LDWRTGDSLV-VGR-SDPEHPVWYV  524 (591)
T ss_pred             ceEecCCEEE-EEe-cCCCCceEEE
Confidence            9999999855 444 4444445543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.31  E-value=0.07  Score=43.88  Aligned_cols=142  Identities=15%  Similarity=0.143  Sum_probs=75.6

Q ss_pred             CCCccEEEE--EeCCC---CEEEEEcCCCeeeEEeecccccccccceEEEEEC-CCCcEEE-EE-cCCeEEEEEcCCCCc
Q 022019          135 DPTSCVFAS--TTRDH---PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN-PTGTKIF-AG-YNKSVRVFDVHRPGR  206 (304)
Q Consensus       135 ~~~~~~l~~--~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~-~~-~d~~i~v~d~~~~~~  206 (304)
                      .+++..|+.  ..++.   .+.++|..++........... .-......+.|. +++..++ .+ .+|.-+||-+...+.
T Consensus       192 ~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~-~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~  270 (353)
T PF00930_consen  192 SPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD-GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG  270 (353)
T ss_dssp             EETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS-SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS
T ss_pred             cCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC-cceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc
Confidence            556663333  23332   367778877765544433221 111122355554 6665555 55 777665555544332


Q ss_pred             cceeeeeeecccccccccee-EEEeecCCCcEEEEEecCC----eEEEEecCCceEeEEeccccCCeEEEEECCCCcEEE
Q 022019          207 DFEKYSTLKGNKEGQAGIMS-AIAFSPTHTGMLAIGSYSQ----TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  281 (304)
                      ...   .+    ....-.|. -+.++++++.+++++..++    .++..++..+..+..+....+.-..+.|||+|++++
T Consensus       271 ~~~---~l----T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v  343 (353)
T PF00930_consen  271 KPR---QL----TSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYV  343 (353)
T ss_dssp             EEE---ES----S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred             cee---cc----ccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEE
Confidence            211   11    22223353 4778887777778887643    466666662334455654333337999999999987


Q ss_pred             Eee
Q 022019          282 TGG  284 (304)
Q Consensus       282 ~~~  284 (304)
                      ...
T Consensus       344 ~~~  346 (353)
T PF00930_consen  344 DTY  346 (353)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            655

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.30  E-value=0.075  Score=44.16  Aligned_cols=102  Identities=17%  Similarity=0.288  Sum_probs=59.6

Q ss_pred             EEEEcCCCCeEEEecCCCeEEE---eeCCCCCC---ccccccccccccCCccceEEEeecCCeEEEEeecCccce----e
Q 022019           65 GIKWSPDGSSFLTSSEDKTLRI---FSLPENGI---SYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA----S  134 (304)
Q Consensus        65 ~i~~s~~~~~l~s~~~dg~v~v---wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~  134 (304)
                      .++.+|+++.||.+..+..+.+   |+......   .+......          .+....+..|+++.|.|-...    -
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g----------~l~~~~~e~ITsi~clpl~s~~~s~~   75 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSG----------PLDDEPGECITSILCLPLSSQKRSTG   75 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeee----------eccCCCCCEEEEEEEEEeecccccCC
Confidence            4788999999999988776665   54422110   00100000          011112257888888764222    1


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEEC
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN  182 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~  182 (304)
                      .+|...+++|..+|.|++|.. +|..+..-..|..     +|..+.+.
T Consensus        76 ~~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~-----pV~~ik~~  117 (415)
T PF14655_consen   76 GPDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEE-----PVLKIKCR  117 (415)
T ss_pred             CCCcEEEEEEecccEEEEEec-cchHHHHHhcCcc-----ceEEEEec
Confidence            367889999999999999985 5554433333332     56565553

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.29  E-value=0.06  Score=42.77  Aligned_cols=146  Identities=16%  Similarity=0.190  Sum_probs=72.9

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      +++|+++++++......-||--.......-..     ....|.+|.|+|++.+.+++..|.|+.=+.....   ..+...
T Consensus       153 ~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~-----~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~---~~w~~~  224 (302)
T PF14870_consen  153 SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN-----SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG---ETWSEP  224 (302)
T ss_dssp             -TTS-EEEEETTSSEEEEE-TT-SS-EEEE-------SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE---EEE---
T ss_pred             CCCCcEEEEECcccEEEEecCCCccceEEccC-----ccceehhceecCCCCEEEEeCCcEEEEccCCCCc---cccccc
Confidence            67888777776555445666432211111111     1238999999999988888899999888732211   111221


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec---cccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH---GQEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                      ..........+..++|.+ ...+.++|+ .|.+ +...+.++.-..-+   .-...++.+.|.++.+-++.|  .+|.|.
T Consensus       225 ~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG--~~G~ll  299 (302)
T PF14870_consen  225 IIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG--QDGVLL  299 (302)
T ss_dssp             B-TTSS--S-EEEEEESS-SS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE---STTEEE
T ss_pred             cCCcccCceeeEEEEecC-CCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC--CCcEEE
Confidence            111112233478999998 565666554 4544 44445555433333   234568999997666656655  589887


Q ss_pred             EE
Q 022019          292 CW  293 (304)
Q Consensus       292 vw  293 (304)
                      -|
T Consensus       300 ~~  301 (302)
T PF14870_consen  300 RY  301 (302)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=0.0022  Score=57.51  Aligned_cols=102  Identities=19%  Similarity=0.225  Sum_probs=72.1

Q ss_pred             CCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec
Q 022019          184 TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH  262 (304)
Q Consensus       184 ~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  262 (304)
                      .+..++.| ..|.+-..|+...-      .. ......-.++|++++|+. ++.+++.|-.+|.|.+||...+++++.+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL------~~-~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~  169 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNL------GP-LHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVIT  169 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhccc------ch-hhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeee
Confidence            34556655 77888888886521      11 112234467899999999 88899999999999999999999888888


Q ss_pred             cccCCeEE---EEECCCCcEEEEeeccCCeEEEEecc
Q 022019          263 GQEGGVTH---VQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       263 ~~~~~v~~---~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      .|..+.++   +.+..++..++++. ..|.  +|++.
T Consensus       170 e~~ap~t~vi~v~~t~~nS~llt~D-~~Gs--f~~lv  203 (1206)
T KOG2079|consen  170 EHGAPVTGVIFVGRTSQNSKLLTSD-TGGS--FWKLV  203 (1206)
T ss_pred             ecCCccceEEEEEEeCCCcEEEEcc-CCCc--eEEEE
Confidence            66665444   44455666677776 5564  67653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.19  E-value=0.03  Score=47.49  Aligned_cols=125  Identities=12%  Similarity=0.154  Sum_probs=71.9

Q ss_pred             CCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCC-----CeeeEEeecccccccccceEEEEECCCCcEEEEE-c
Q 022019          119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (304)
Q Consensus       119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~  192 (304)
                      -..|..+.|.|...+-.|   .+++......|.+|-+.-     ++........-.....--..+..|+|....|++= .
T Consensus        56 FEhV~GlsW~P~~~~~~p---aLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~  132 (671)
T PF15390_consen   56 FEHVHGLSWAPPCTADTP---ALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA  132 (671)
T ss_pred             cceeeeeeecCcccCCCC---ceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence            368999999887554332   355555677899998852     2222221111100001123478899999888853 3


Q ss_pred             CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC
Q 022019          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (304)
Q Consensus       193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~  253 (304)
                      ...-.+++++..+...+.  .     -...+.|.|.+|.+|+.+++++.+..=.-+|||-.
T Consensus       133 ~dvSV~~sV~~d~srVka--D-----i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSRVKA--D-----IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CceeEeeeeeeCCceEEE--e-----ccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            333345666554322221  1     12356699999999666666555555557888853

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.13  E-value=0.11  Score=42.84  Aligned_cols=219  Identities=12%  Similarity=0.156  Sum_probs=93.5

Q ss_pred             CCC-CceeEEEEcC-----------CCCeEEEec-CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEE
Q 022019           58 IPN-NFLKGIKWSP-----------DGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD  124 (304)
Q Consensus        58 ~h~-~~V~~i~~s~-----------~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  124 (304)
                      ++. +.....-|+.           +.++|+..+ .++.|.|.|+.+......+...            +.  . ..+..
T Consensus        61 p~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~Kv------------Ie--~-~ev~~  125 (461)
T PF05694_consen   61 PNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKV------------IE--P-EEVFE  125 (461)
T ss_dssp             SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEE------------E---H-HHHHH
T ss_pred             CCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEee------------eC--H-HHHHh
Confidence            443 5777777862           345777666 6789999999854321111100            00  0 00000


Q ss_pred             --EeecCccceeCCCccEEEEEeC------CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEc----
Q 022019          125 --FCWFPHMSASDPTSCVFASTTR------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY----  192 (304)
Q Consensus       125 --~~~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~----  192 (304)
                        -.-.|+..-.-|+|+.++++-.      -|-+.+.|-++.+....+.....  ....-+.+-|.|..+.++++.    
T Consensus       126 k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~--~~~~gYDfw~qpr~nvMiSSeWg~P  203 (461)
T PF05694_consen  126 KTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRG--PQPFGYDFWYQPRHNVMISSEWGAP  203 (461)
T ss_dssp             HH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-T--T------EEEETTTTEEEE-B---H
T ss_pred             hcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCC--CCCCCCCeEEcCCCCEEEEeccCCh
Confidence              0001222222567888887632      24578888877777766655332  122456788888888777542    


Q ss_pred             -----------------CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEee--cCCCcEEEEEecCCeEEEEec-
Q 022019          193 -----------------NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS--PTHTGMLAIGSYSQTSAIYRE-  252 (304)
Q Consensus       193 -----------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~dg~i~i~d~-  252 (304)
                                       ..++.+||+...    +..+.+...  .....+..+.|.  |....-++.+.-.+.|..|-- 
T Consensus       204 ~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r----~~~Q~idLg--~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~  277 (461)
T PF05694_consen  204 SMFEKGFNPEDLEAGKYGHSLHVWDWSTR----KLLQTIDLG--EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKD  277 (461)
T ss_dssp             HHHTT---TTTHHHH-S--EEEEEETTTT----EEEEEEES---TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-
T ss_pred             hhcccCCChhHhhcccccCeEEEEECCCC----cEeeEEecC--CCCCceEEEEecCCCCccceEEEEeccceEEEEEEc
Confidence                             357999999873    222222211  111234456664  422333333334445554432 


Q ss_pred             CCce----EeEEeccc-----------------cCCeEEEEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          253 DNME----LLYVLHGQ-----------------EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       253 ~~~~----~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      +.++    .+..+...                 ..-|+.+..|.|.++|+.++-.+|.|+-||+....
T Consensus       278 ~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  278 DDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             CCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence            3332    22223211                 23479999999999999988889999999998743

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.13  E-value=0.13  Score=43.40  Aligned_cols=111  Identities=15%  Similarity=0.148  Sum_probs=63.4

Q ss_pred             eeCCCccEEEEE-eCCC----CEEEEEcCCCeeeEEe-ecccccccccceEEEEECCCCcEEE-EEc-----------CC
Q 022019          133 ASDPTSCVFAST-TRDH----PIHLWDATTGLLRCTY-RAYDAVDEITAAFSVAFNPTGTKIF-AGY-----------NK  194 (304)
Q Consensus       133 ~~~~~~~~l~~~-~~dg----~i~i~d~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~-~~~-----------d~  194 (304)
                      .++|+|++++.+ +..|    .++++|+.+++.+... ...       ....+.|.++++.++ +..           ..
T Consensus       130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-------~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-------KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-------ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-------ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            348999988766 4444    4999999999765432 211       223499999988777 542           22


Q ss_pred             eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEE-EecC---CeEEEEecCCc
Q 022019          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI-GSYS---QTSAIYREDNM  255 (304)
Q Consensus       195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~d---g~i~i~d~~~~  255 (304)
                      .|+.|.+.++...-..+..   . .........+..+++ +++++. ....   ..+++.|+..+
T Consensus       203 ~v~~~~~gt~~~~d~lvfe---~-~~~~~~~~~~~~s~d-~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFE---E-PDEPFWFVSVSRSKD-GRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-----TTCTTSEEEEEE-TT-SSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEEEECCCChHhCeeEEe---e-cCCCcEEEEEEecCc-ccEEEEEEEccccCCeEEEEecccc
Confidence            3777777654322111111   1 111112567888994 455554 3332   34788888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.04  E-value=0.19  Score=43.76  Aligned_cols=209  Identities=12%  Similarity=0.121  Sum_probs=111.1

Q ss_pred             CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEE
Q 022019           72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH  151 (304)
Q Consensus        72 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  151 (304)
                      +..++.++.++.|.-.|..+++............    .         ....+.......+++  .+..++.++.|+.+.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~----~---------~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~  133 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDD----V---------IPVMCCDVVNRGVAL--YDGKVFFGTLDARLV  133 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcc----c---------ccccccccccccceE--ECCEEEEEcCCCEEE
Confidence            4566677778889999998887655433211000    0         000000000000111  233566778899999


Q ss_pred             EEEcCCCeeeEEeecccccccccceEEEEECC---CCcEEEEE------cCCeEEEEEcCCCCccceeeeeeec------
Q 022019          152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNP---TGTKIFAG------YNKSVRVFDVHRPGRDFEKYSTLKG------  216 (304)
Q Consensus       152 i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~~~~------  216 (304)
                      -.|.++|+.+.........    .-..+.-+|   ++..++..      .+|.|.-+|.+++............      
T Consensus       134 ALDa~TGk~~W~~~~~~~~----~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~  209 (527)
T TIGR03075       134 ALDAKTGKVVWSKKNGDYK----AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDK  209 (527)
T ss_pred             EEECCCCCEEeeccccccc----ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccc
Confidence            9999999987665532210    000111122   34444422      2678999998876433221111100      


Q ss_pred             -------cc-----------cccccceeEEEeecCCCcEEEEEecC-----C-----------eEEEEecCCceEeEEec
Q 022019          217 -------NK-----------EGQAGIMSAIAFSPTHTGMLAIGSYS-----Q-----------TSAIYREDNMELLYVLH  262 (304)
Q Consensus       217 -------~~-----------~~~~~~v~~~~~~p~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~  262 (304)
                             ..           .+....-..+++.| ...++..+..+     +           .|.-.|+++++..-.++
T Consensus       210 ~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q  288 (527)
T TIGR03075       210 ADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQ  288 (527)
T ss_pred             cccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeee
Confidence                   00           00011112457777 44455555522     2           56777888998877665


Q ss_pred             cccCCe---------EEEEECCCCc---EEEEeeccCCeEEEEecccceee
Q 022019          263 GQEGGV---------THVQFSRDGN---YLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       263 ~~~~~v---------~~~~~~~~~~---~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      .....+         .-+....+|+   .++.+. ++|.+.+.|-++|+.+
T Consensus       289 ~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       289 TTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHAD-RNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCCCCccccCCCCcEEEEeccCCcEEEEEEEeC-CCceEEEEECCCCcee
Confidence            322211         1222334676   677788 9999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.04  E-value=0.1  Score=40.65  Aligned_cols=153  Identities=16%  Similarity=0.178  Sum_probs=84.1

Q ss_pred             ceeEEEEcCCCCeEEEec---CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           62 FLKGIKWSPDGSSFLTSS---EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      .+...+++++|+.+|...   ....+.++.......                  ...  .+..+....|       ++++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~------------------~~~--~g~~l~~PS~-------d~~g   77 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR------------------PVL--TGGSLTRPSW-------DPDG   77 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce------------------eec--cCCccccccc-------cCCC
Confidence            588999999999776554   233455554332110                  000  2234444444       6677


Q ss_pred             cEEEEEeCCCCEEEEE-cCCCeeeE-EeecccccccccceEEEEECCCCcEEE-EE---cCCeEEEEEcCCCCcc-ceee
Q 022019          139 CVFASTTRDHPIHLWD-ATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRVFDVHRPGRD-FEKY  211 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d-~~~~~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~---~d~~i~v~d~~~~~~~-~~~~  211 (304)
                      ...+....+...+++. ..++.... ....... .  ..|..+.++|||..++ ..   .++.|.+--+...... ...+
T Consensus        78 ~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~-~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l  154 (253)
T PF10647_consen   78 WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGL-R--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL  154 (253)
T ss_pred             CEEEEEcCCCceEEEEecCCCcceeEEeccccc-C--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee
Confidence            6666666666666663 33333221 1222111 0  1789999999999988 32   4678888776543332 1122


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCC
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ  245 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  245 (304)
                      .............++.++|.+ +..+++.+...+
T Consensus       155 ~~~~~~~~~~~~~v~~v~W~~-~~~L~V~~~~~~  187 (253)
T PF10647_consen  155 TGPRRVAPPLLSDVTDVAWSD-DSTLVVLGRSAG  187 (253)
T ss_pred             ccceEecccccCcceeeeecC-CCEEEEEeCCCC
Confidence            222222223345689999999 555555554433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.95  E-value=0.084  Score=46.16  Aligned_cols=110  Identities=5%  Similarity=0.121  Sum_probs=68.0

Q ss_pred             ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEee--cCCCcEEEEEecCCeEEEEe
Q 022019          175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS--PTHTGMLAIGSYSQTSAIYR  251 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~dg~i~i~d  251 (304)
                      .+.-+.-+.-++..++. ....+.|||.+...-      ..... ....+.|.++.|.  | ++..+++.+..+.|.+|.
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l------E~~~~-f~~~~~I~dLDWtst~-d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL------EYEES-FSEDDPIRDLDWTSTP-DGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEE------EEeee-ecCCCceeeceeeecC-CCCEEEEEEcCcEEEEEE
Confidence            33445555555555565 667899999986421      11111 1345678999986  5 455666667778888884


Q ss_pred             cC---------CceEeEEe--cccc-CCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          252 ED---------NMELLYVL--HGQE-GGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       252 ~~---------~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      -.         +..++..+  ..|+ .+|.+..|.++|..++.+   ++.+.|++-
T Consensus       103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s---GNqlfv~dk  155 (631)
T PF12234_consen  103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS---GNQLFVFDK  155 (631)
T ss_pred             ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe---CCEEEEECC
Confidence            31         22344443  2344 579999999999766544   456888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.91  E-value=0.29  Score=44.02  Aligned_cols=94  Identities=15%  Similarity=0.183  Sum_probs=57.9

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccc------ccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV------NACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      ...-.|..|.++|+|++||..|..|.+.+.=.+.......+      ..+....-   ....+.......|..+.|+|. 
T Consensus        82 ~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v---~~~~~~~~~~~~i~qv~WhP~-  157 (717)
T PF10168_consen   82 PPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV---DERFFTSNSSLEIKQVRWHPW-  157 (717)
T ss_pred             CCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe---chhhccCCCCceEEEEEEcCC-
Confidence            34457999999999999999988765444322211110000      00000000   000011233457899999997 


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCC
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTG  158 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~  158 (304)
                         ++++.+|++-..|+++++||+...
T Consensus       158 ---s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  158 ---SESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             ---CCCCCeEEEEecCCEEEEEecCCC
Confidence               667788999999999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.84  E-value=0.0052  Score=32.39  Aligned_cols=31  Identities=19%  Similarity=0.221  Sum_probs=26.5

Q ss_pred             ceeEEEeecCCC--cEEEEEecCCeEEEEecCC
Q 022019          224 IMSAIAFSPTHT--GMLAIGSYSQTSAIYREDN  254 (304)
Q Consensus       224 ~v~~~~~~p~~~--~~l~~~~~dg~i~i~d~~~  254 (304)
                      .+.++.|+|..+  .+|+.+-.-|.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            588999998555  6888888889999999985

It contains a characteristic DLL sequence motif.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.83  E-value=0.031  Score=51.05  Aligned_cols=140  Identities=14%  Similarity=0.117  Sum_probs=82.7

Q ss_pred             CCCccEEEE--EeCCCCEEEEEcCCCeeeE-----Eeeccc-ccccccceEEEEECCCCc--EEEEEcCCeEEEEEcCCC
Q 022019          135 DPTSCVFAS--TTRDHPIHLWDATTGLLRC-----TYRAYD-AVDEITAAFSVAFNPTGT--KIFAGYNKSVRVFDVHRP  204 (304)
Q Consensus       135 ~~~~~~l~~--~~~dg~i~i~d~~~~~~~~-----~~~~~~-~~~~~~~v~~i~~~~~~~--~l~~~~d~~i~v~d~~~~  204 (304)
                      .+|+...++  .+.+-.|..||+++-....     -+..+. .........++.|+|.-.  .+++..|+.|++..+...
T Consensus       109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~  188 (1405)
T KOG3630|consen  109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL  188 (1405)
T ss_pred             ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence            445444333  3444478999997532211     111111 011222456889998643  333448999999887642


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccc----cCCeEEEEECCCCcEE
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ----EGGVTHVQFSRDGNYL  280 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l  280 (304)
                      ......        .......++++|+| .+..+++|-.+|++.-|-.. .+....+.+.    ...|.++.|-....++
T Consensus       189 ~~~v~s--------~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  189 AQNVTS--------FPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhcc--------cCcccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence            211111        12344589999999 88899999999999888753 3333333221    3579999998776666


Q ss_pred             EEee
Q 022019          281 YTGG  284 (304)
Q Consensus       281 ~~~~  284 (304)
                      ++-+
T Consensus       259 vvy~  262 (1405)
T KOG3630|consen  259 VVYG  262 (1405)
T ss_pred             EEec
Confidence            6544

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.80  E-value=0.013  Score=53.22  Aligned_cols=120  Identities=12%  Similarity=0.076  Sum_probs=79.2

Q ss_pred             ceEEEEECCCCcEEEE---EcCCeEEEEEcCCCCcccee-eeeeeccc--cccccceeEEEeecCCCcEEEEEecCCeEE
Q 022019          175 AAFSVAFNPTGTKIFA---GYNKSVRVFDVHRPGRDFEK-YSTLKGNK--EGQAGIMSAIAFSPTHTGMLAIGSYSQTSA  248 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~---~~d~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~  248 (304)
                      .+..+...+|+...++   ..+-.|..||++.-...... ...+....  ........++.|+|.-....+++..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            5667777888777663   25457999999864322111 11111111  112233567889996666778888999999


Q ss_pred             EEecCCceE-eEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          249 IYREDNMEL-LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       249 i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      +..+..... +..+. -....++++|+|.|+.++.|- ..|++.=|...
T Consensus       182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~-nnGt~vQy~P~  228 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGR-NNGTEVQYEPS  228 (1405)
T ss_pred             hhhhhhhhhhhcccC-cccceeeEEeccccceeeEec-CCCeEEEeecc
Confidence            998764432 22333 345789999999999999998 89998877653

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.75  E-value=0.0029  Score=55.90  Aligned_cols=146  Identities=12%  Similarity=0.094  Sum_probs=85.3

Q ss_pred             CCCEEEEEcC--CCeeeEEeecccccccccceEEEEECC---CCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccc
Q 022019          147 DHPIHLWDAT--TGLLRCTYRAYDAVDEITAAFSVAFNP---TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEG  220 (304)
Q Consensus       147 dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  220 (304)
                      -|.+.+||+.  .|+....+..+........+.-+.|.|   +..++..+ .++.|++..+.....         ..+.+
T Consensus       152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~---------~l~rs  222 (1283)
T KOG1916|consen  152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR---------SLFRS  222 (1283)
T ss_pred             hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH---------HHHHh
Confidence            3678899876  455444443332222223445666665   45566677 888999888765321         01122


Q ss_pred             cccceeE-----------EEeecCCCcEEEEEecCCeEEEEec-----CCceEeEEeccccC-CeEEEEECCC-------
Q 022019          221 QAGIMSA-----------IAFSPTHTGMLAIGSYSQTSAIYRE-----DNMELLYVLHGQEG-GVTHVQFSRD-------  276 (304)
Q Consensus       221 ~~~~v~~-----------~~~~p~~~~~l~~~~~dg~i~i~d~-----~~~~~~~~~~~~~~-~v~~~~~~~~-------  276 (304)
                      |...+..           -..+| +|..++.++.||.+++|.+     ....++...+.|.+ +-.|.-++.+       
T Consensus       223 Hs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i  301 (1283)
T KOG1916|consen  223 HSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSI  301 (1283)
T ss_pred             cCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCcc
Confidence            3333222           23688 7889999999999887765     33456667777763 3222223322       


Q ss_pred             C--cEEEEeeccCCeEEEEecccceeee
Q 022019          277 G--NYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       277 ~--~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      +  .++++++..+..+++|....-+|++
T Consensus       302 ~~w~~~Itttd~nre~k~w~~a~w~Cll  329 (1283)
T KOG1916|consen  302 GKWVLRITTTDVNREEKFWAEAPWQCLL  329 (1283)
T ss_pred             ceeEEEEecccCCcceeEeeccchhhhh
Confidence            1  3456666456679999887666654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.70  E-value=0.13  Score=41.93  Aligned_cols=108  Identities=19%  Similarity=0.160  Sum_probs=60.1

Q ss_pred             ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecC---CCcEEEEEecC-------
Q 022019          175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT---HTGMLAIGSYS-------  244 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~d-------  244 (304)
                      ..++|+|.|+|+++++-..|.|++++...  .....+................++++|+   ++.++++.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g--~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDKDG--SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEETTT--EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeCCC--cCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            45789999999988887999999999322  2111122222223344556889999993   35555555432       


Q ss_pred             -CeEEEEecCCc-------eEe-EEecc---ccCCeEEEEECCCCcEEEEee
Q 022019          245 -QTSAIYREDNM-------ELL-YVLHG---QEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       245 -g~i~i~d~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~  284 (304)
                       ..|.-|.....       +.+ ..+..   ....-..|.|.|||.+.++.+
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G  132 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG  132 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence             23333433222       111 12222   234567799999997766666

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA03098 kelch-like protein; Provisional

Probab=96.65  E-value=0.31  Score=42.73  Aligned_cols=146  Identities=15%  Similarity=0.143  Sum_probs=70.8

Q ss_pred             CccEEEEEeCC-----CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-Ec-C-----CeEEEEEcCCC
Q 022019          137 TSCVFASTTRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY-N-----KSVRVFDVHRP  204 (304)
Q Consensus       137 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~-d-----~~i~v~d~~~~  204 (304)
                      ++.+++.|+.+     ..+..||..+++....-..+.. .   .-.+++. -+++..+. |. .     ..+..||..+.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~-r---~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~  416 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP-R---YNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN  416 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC-C---ccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence            56677777765     3477888877654322111111 0   1112222 23555553 42 1     45788888652


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC--------eEEEEecCCce--EeEEeccccCCeEEEEEC
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--------TSAIYREDNME--LLYVLHGQEGGVTHVQFS  274 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--------~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~  274 (304)
                        .+.....+.   .+... . +++..  ++.+++.|+.++        .+.+||..+.+  .+..+.........+.+ 
T Consensus       417 --~W~~~~~~p---~~r~~-~-~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-  486 (534)
T PHA03098        417 --KWSKGSPLP---ISHYG-G-CAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF-  486 (534)
T ss_pred             --eeeecCCCC---ccccC-c-eEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE-
Confidence              222111111   11111 1 22222  456777776532        38889987654  22222211112222333 


Q ss_pred             CCCcEEEEeeccC-----CeEEEEecccce
Q 022019          275 RDGNYLYTGGRKD-----PYILCWDLRKAV  299 (304)
Q Consensus       275 ~~~~~l~~~~~~d-----~~i~vwd~~~~~  299 (304)
                       +++.++.|| .+     +.+.+||..+.+
T Consensus       487 -~~~iyv~GG-~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        487 -NNKIYVVGG-DKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             -CCEEEEEcC-CcCCcccceeEEEeCCCCE
Confidence             567777776 43     478889887764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.62  E-value=0.062  Score=41.46  Aligned_cols=103  Identities=17%  Similarity=0.167  Sum_probs=66.1

Q ss_pred             ceEEEEECCCCcEEE-EE-c-CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec-----CCe
Q 022019          175 AAFSVAFNPTGTKIF-AG-Y-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-----SQT  246 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~-~~-~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----dg~  246 (304)
                      ....|+|+|.-..-+ .. . .-...+||.................+.+      .=.||| ++.+|...-.     -|.
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyG------HGvfs~-dG~~LYATEndfd~~rGV  141 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYG------HGVFSP-DGRLLYATENDFDPNRGV  141 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeec------ccccCC-CCcEEEeecCCCCCCCce
Confidence            344788988654433 34 3 3456789987643322222211122222      347999 5555554433     267


Q ss_pred             EEEEecCCc-eEeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          247 SAIYREDNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       247 i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      |-|||.+.+ ..+.++..|.-.-..+.|.+||+.|+.++
T Consensus       142 iGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         142 IGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             EEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            999999854 46788888888889999999999988775

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.62  E-value=0.34  Score=40.71  Aligned_cols=54  Identities=19%  Similarity=0.198  Sum_probs=38.8

Q ss_pred             ccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccc-cCCeEEEEECCC
Q 022019          222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-EGGVTHVQFSRD  276 (304)
Q Consensus       222 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~  276 (304)
                      .+++..|+.|| +++++|.-..+|.+.+.+.+-.+....+... ......+.|.-+
T Consensus       216 ~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  216 DGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             CCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence            35699999999 7778888889999999887666666666533 234456666543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.61  E-value=0.34  Score=40.51  Aligned_cols=151  Identities=7%  Similarity=0.062  Sum_probs=86.3

Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeee--EEeecccccccccceEEEEECC-----CCcEEEEEcCCeEEEEEcCCCCcc--
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNP-----TGTKIFAGYNKSVRVFDVHRPGRD--  207 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~i~~~~-----~~~~l~~~~d~~i~v~d~~~~~~~--  207 (304)
                      +...+++|+..|.++||+...+...  ..+-...   -..+|..+..-+     +...||+=.-..+.||.+......  
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~---l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ---LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEe---cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence            4568999999999999998653311  1111100   112666665532     334565667888999988543221  


Q ss_pred             ----ceeeeeeeccccccccceeEEEeecC----CCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcE
Q 022019          208 ----FEKYSTLKGNKEGQAGIMSAIAFSPT----HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY  279 (304)
Q Consensus       208 ----~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  279 (304)
                          ..........+   ......++.-|-    +..+|++-+.||.+.+|+-+...-...+.. .--...+.|.+.-..
T Consensus       113 ~g~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDs  188 (418)
T PF14727_consen  113 HGNQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDS  188 (418)
T ss_pred             cCcEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCE
Confidence                11111111111   112334444332    246899999999999999765543334432 111234677777777


Q ss_pred             EEEeeccCCeEEEEec
Q 022019          280 LYTGGRKDPYILCWDL  295 (304)
Q Consensus       280 l~~~~~~d~~i~vwd~  295 (304)
                      +++++ .+..|.-|..
T Consensus       189 fvt~s-ss~~l~~Yky  203 (418)
T PF14727_consen  189 FVTAS-SSWTLECYKY  203 (418)
T ss_pred             EEEec-CceeEEEecH
Confidence            88887 7777777765

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.60  E-value=0.2  Score=37.66  Aligned_cols=98  Identities=12%  Similarity=0.147  Sum_probs=63.6

Q ss_pred             eEEEEECCCCcEEE-E-EcCCeEEEEEcCCCCccc---eeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEE
Q 022019          176 AFSVAFNPTGTKIF-A-GYNKSVRVFDVHRPGRDF---EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY  250 (304)
Q Consensus       176 v~~i~~~~~~~~l~-~-~~d~~i~v~d~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~  250 (304)
                      -+.++|+.+.+.++ . +.+-.|.-||........   +.+..+........-..-.++... .+.++++.-..++|.-+
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKV  238 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEE
Confidence            35799998888777 3 377778778844322111   111112111110111123455555 66677777778899999


Q ss_pred             ecCCceEeEEeccccCCeEEEEEC
Q 022019          251 REDNMELLYVLHGQEGGVTHVQFS  274 (304)
Q Consensus       251 d~~~~~~~~~~~~~~~~v~~~~~~  274 (304)
                      |..+++.+.++.-....|++++|-
T Consensus       239 dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  239 DPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCCCCcEEEEEEcCCCceEEEEec
Confidence            999999999999888899999995

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.59  E-value=0.2  Score=45.90  Aligned_cols=105  Identities=10%  Similarity=0.102  Sum_probs=71.1

Q ss_pred             CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCE
Q 022019           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI  150 (304)
Q Consensus        71 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i  150 (304)
                      .+..++.|+..|.+-..|+..+-..       .         ........+|.+++|       +.+|..++.|-.+|.|
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~-------~---------~~ne~v~~~Vtsvaf-------n~dg~~l~~G~~~G~V  154 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGP-------L---------HQNERVQGPVTSVAF-------NQDGSLLLAGLGDGHV  154 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccch-------h---------hcCCccCCcceeeEe-------cCCCceeccccCCCcE
Confidence            4567888888888888887643110       0         011122367888877       7899999999999999


Q ss_pred             EEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcC
Q 022019          151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVH  202 (304)
Q Consensus       151 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~  202 (304)
                      .+||+..++..+.+..+... + ..|..+.+..++..++++ ..|.  +|.+.
T Consensus       155 ~v~D~~~~k~l~~i~e~~ap-~-t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  155 TVWDMHRAKILKVITEHGAP-V-TGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             EEEEccCCcceeeeeecCCc-c-ceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            99999999888888776642 1 244555555666656666 4454  55553

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.56  E-value=0.25  Score=38.45  Aligned_cols=146  Identities=15%  Similarity=0.085  Sum_probs=79.4

Q ss_pred             ceeCCCccEEEEEe--C-CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEE-cCCCCc
Q 022019          132 SASDPTSCVFASTT--R-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFD-VHRPGR  206 (304)
Q Consensus       132 ~~~~~~~~~l~~~~--~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d-~~~~~~  206 (304)
                      .++++++..++...  . ...++++.  .+........ ..     .+....|++++...++. .+...+++. ...+..
T Consensus        29 ~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~-g~-----~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   29 PAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLT-GG-----SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             eEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeecc-CC-----ccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            35588888777665  2 23444544  3332222211 11     56778999998877765 555556653 222111


Q ss_pred             cceeeeeeeccccccccceeEEEeecCCCcEEEEEe--cCCeEEEEecC---Cc------eEeEEeccccCCeEEEEECC
Q 022019          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS--YSQTSAIYRED---NM------ELLYVLHGQEGGVTHVQFSR  275 (304)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~---~~------~~~~~~~~~~~~v~~~~~~~  275 (304)
                      ...   ....  ......|.++.++|++.++.++..  .++.|.+--+.   .+      .+..........++++.|.+
T Consensus       101 ~~~---~v~~--~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen  101 EPV---EVDW--PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             eeE---Eecc--cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence            111   1110  111117999999996555555442  24666666432   22      11222223345789999999


Q ss_pred             CCcEEEEeeccCCeE
Q 022019          276 DGNYLYTGGRKDPYI  290 (304)
Q Consensus       276 ~~~~l~~~~~~d~~i  290 (304)
                      ++.+++.+...++.+
T Consensus       176 ~~~L~V~~~~~~~~~  190 (253)
T PF10647_consen  176 DSTLVVLGRSAGGPV  190 (253)
T ss_pred             CCEEEEEeCCCCCce
Confidence            998877776344433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.54  E-value=0.29  Score=38.96  Aligned_cols=159  Identities=14%  Similarity=0.134  Sum_probs=76.8

Q ss_pred             cCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC
Q 022019           57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (304)
Q Consensus        57 ~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (304)
                      .+-.+.+..+.-++||++++++..-....-||.-....                 ..........+..+.|       +|
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-----------------~~~~r~~~~riq~~gf-------~~  196 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-----------------QPHNRNSSRRIQSMGF-------SP  196 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS------------------EEEE--SSS-EEEEEE--------T
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccc-----------------eEEccCccceehhcee-------cC
Confidence            34457788888899999998887666666776542111                 1122223367888877       66


Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeec--ccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeee
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRA--YDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      ++.+.+.+ ..|.|++=+....  ...+..  .........+..++|.+++...++|..|.+.+ .. ..++..+.....
T Consensus       197 ~~~lw~~~-~Gg~~~~s~~~~~--~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~-DgGktW~~~~~~  271 (302)
T PF14870_consen  197 DGNLWMLA-RGGQIQFSDDPDD--GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-ST-DGGKTWQKDRVG  271 (302)
T ss_dssp             TS-EEEEE-TTTEEEEEE-TTE--EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ES-STTSS-EE-GGG
T ss_pred             CCCEEEEe-CCcEEEEccCCCC--ccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eC-CCCccceECccc
Confidence            77766644 7888887772211  112211  11101112578999999998888888885544 22 233333322111


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecCCeEEEE
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY  250 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~  250 (304)
                          ......++.+.|.+ ..+-++ -+.+|.|.-|
T Consensus       272 ----~~~~~n~~~i~f~~-~~~gf~-lG~~G~ll~~  301 (302)
T PF14870_consen  272 ----ENVPSNLYRIVFVN-PDKGFV-LGQDGVLLRY  301 (302)
T ss_dssp             ----TTSSS---EEEEEE-TTEEEE-E-STTEEEEE
T ss_pred             ----cCCCCceEEEEEcC-CCceEE-ECCCcEEEEe
Confidence                22334478888876 443444 4567876544

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.53  E-value=0.36  Score=42.93  Aligned_cols=111  Identities=12%  Similarity=0.085  Sum_probs=68.7

Q ss_pred             CccEEEEEeCCCCEEEEEcCC-------C----ee---eEEeecccccccccceEEEEEC--CCCcEEEEE-cCCeEEEE
Q 022019          137 TSCVFASTTRDHPIHLWDATT-------G----LL---RCTYRAYDAVDEITAAFSVAFN--PTGTKIFAG-YNKSVRVF  199 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~-------~----~~---~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~-~d~~i~v~  199 (304)
                      +...|+.|.+||.|.+|.+++       .    ..   .......-.......+++++++  ...++||+| ....|.||
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            456799999999999997632       1    00   0000000111122378999998  788899977 77788888


Q ss_pred             EcCCCCccceeeeeeeccccccccceeEEEeecCC----Cc-EEEEEecCCeEEEEec
Q 022019          200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH----TG-MLAIGSYSQTSAIYRE  252 (304)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~-~l~~~~~dg~i~i~d~  252 (304)
                      -+...........     ...+..-|.+|+|-++.    +. .+++++-.|.+.+|++
T Consensus       193 af~l~~~r~~~~~-----s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVP-----SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecccccccccc-----ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            7654211111100     11244458899998743    22 6777888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.46  E-value=0.17  Score=44.38  Aligned_cols=120  Identities=16%  Similarity=0.129  Sum_probs=75.4

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      -....-+.-|.-++..++-+....+.|||...+...++                ..+.....|.++.|.     ..|+++
T Consensus        29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~----------------~~f~~~~~I~dLDWt-----st~d~q   87 (631)
T PF12234_consen   29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE----------------ESFSEDDPIRDLDWT-----STPDGQ   87 (631)
T ss_pred             CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe----------------eeecCCCceeeceee-----ecCCCC
Confidence            33445555555454444444456899999986643222                222445789999994     478999


Q ss_pred             EEEEEeCCCCEEEEEcC-----C----CeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCC
Q 022019          140 VFASTTRDHPIHLWDAT-----T----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR  203 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~-----~----~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~  203 (304)
                      .+++.+..+.|.+|.-.     .    -..+..+.......  .+|.+..|-++|.+++ |.++.+.|+|-..
T Consensus        88 siLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk~~  157 (631)
T PF12234_consen   88 SILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDKWL  157 (631)
T ss_pred             EEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEE-EeCCEEEEECCCc
Confidence            99999999999998532     1    11223333222211  2788899999886665 4467788887543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.38  E-value=0.39  Score=42.23  Aligned_cols=146  Identities=15%  Similarity=0.253  Sum_probs=75.7

Q ss_pred             CccEEEEEeCCCC-----EEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcC------CeEEEEEcCCC
Q 022019          137 TSCVFASTTRDHP-----IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN------KSVRVFDVHRP  204 (304)
Q Consensus       137 ~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d------~~i~v~d~~~~  204 (304)
                      +|.+.|+|+.||.     +-.||..+.+....-..... .  ..+-...+  +|...++ |.+      ..+..||..+.
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~-r--~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~  454 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR-R--SGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETN  454 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc-e--eeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCC
Confidence            7778999998864     66777766543222111110 0  01112222  3555554 333      35778888762


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCe-----EEEEecCCce--EeEEeccccCCeEEEEECCCC
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-----SAIYREDNME--LLYVLHGQEGGVTHVQFSRDG  277 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-----i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~  277 (304)
                        .+.....+.....++     .++.-  ++.++++|+.|+.     |..||..+.+  .+..+......+..+.+  ++
T Consensus       455 --~W~~~~~M~~~R~~~-----g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~  523 (571)
T KOG4441|consen  455 --TWTLIAPMNTRRSGF-----GVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GG  523 (571)
T ss_pred             --ceeecCCcccccccc-----eEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CC
Confidence              222222222222221     13332  5678899988873     7788887654  33333333333333333  45


Q ss_pred             cEEEEeeccCC-----eEEEEecccce
Q 022019          278 NYLYTGGRKDP-----YILCWDLRKAV  299 (304)
Q Consensus       278 ~~l~~~~~~d~-----~i~vwd~~~~~  299 (304)
                      ...+.|| .||     +|..||..+.+
T Consensus       524 ~ly~vGG-~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  524 KLYAVGG-FDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             EEEEEec-ccCccccceeEEcCCCCCc
Confidence            5666666 665     46777766543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.26  Score=36.37  Aligned_cols=177  Identities=10%  Similarity=0.158  Sum_probs=94.7

Q ss_pred             CCCeEEEecC--CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCC
Q 022019           71 DGSSFLTSSE--DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH  148 (304)
Q Consensus        71 ~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg  148 (304)
                      +|.++.+.+.  ...|++||+.+++.........     +...-.-...-+..++.+.|                  .+|
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-----~~~FgEGit~~gd~~y~LTw------------------~eg  111 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-----DTVFGEGITKLGDYFYQLTW------------------KEG  111 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCC-----ccccccceeeccceEEEEEe------------------ccc
Confidence            5566776654  3469999999776543322210     00000001112234444444                  678


Q ss_pred             CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccc-ccccee
Q 022019          149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEG-QAGIMS  226 (304)
Q Consensus       149 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~v~  226 (304)
                      .-..+|.++-+....+...+      .-+.+.  .|+..|..+ ...+++.-|..+-.    ....+.-...+ .-..+.
T Consensus       112 vaf~~d~~t~~~lg~~~y~G------eGWgLt--~d~~~LimsdGsatL~frdP~tfa----~~~~v~VT~~g~pv~~LN  179 (262)
T COG3823         112 VAFKYDADTLEELGRFSYEG------EGWGLT--SDDKNLIMSDGSATLQFRDPKTFA----ELDTVQVTDDGVPVSKLN  179 (262)
T ss_pred             eeEEEChHHhhhhcccccCC------cceeee--cCCcceEeeCCceEEEecCHHHhh----hcceEEEEECCeeccccc
Confidence            88899988877766665544      334444  455556644 66667666654421    11111111111 111234


Q ss_pred             EEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec------------cccCCeEEEEECCCCcEEEEee
Q 022019          227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------------GQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       227 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      .+.|-  ++.++|-.=.+..|...|..+++.+..+.            .+..-.+.+++.|++..++..|
T Consensus       180 ELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         180 ELEWV--DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ceeee--ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            45554  35566655566667777777776655443            2344678899999885555444

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.28  E-value=0.52  Score=39.14  Aligned_cols=136  Identities=22%  Similarity=0.275  Sum_probs=66.4

Q ss_pred             CCCCEEEEEcCCCeeeEEeecccccccccceEEEEE--CCCCcEEE--EEcCCeEEEEEcCCCCc-cceeeeeeec----
Q 022019          146 RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF--NPTGTKIF--AGYNKSVRVFDVHRPGR-DFEKYSTLKG----  216 (304)
Q Consensus       146 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~--~~~d~~i~v~d~~~~~~-~~~~~~~~~~----  216 (304)
                      ...++.+||+.+.+.++++.......   .+..+.|  +|+..+-+  +.-..+|..|--...+. ..+....+..    
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~---~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~  296 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQ---MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE  296 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEE---EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCC---ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence            45689999999999999988754311   3445666  44454444  33566666554422211 1111111110    


Q ss_pred             ---------cccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc---eEeEEec-c---------------ccCCe
Q 022019          217 ---------NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM---ELLYVLH-G---------------QEGGV  268 (304)
Q Consensus       217 ---------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~-~---------------~~~~v  268 (304)
                               .+..-..-|+.+..|.|+..+++++-.+|.|+.||+...   +++..+. +               -.+..
T Consensus       297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP  376 (461)
T PF05694_consen  297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP  376 (461)
T ss_dssp             SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred             cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence                     001113458899999977777777778999999999753   3333322 1               01234


Q ss_pred             EEEEECCCCcEEEEee
Q 022019          269 THVQFSRDGNYLYTGG  284 (304)
Q Consensus       269 ~~~~~~~~~~~l~~~~  284 (304)
                      .-+..|-||+.|+...
T Consensus       377 qMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  377 QMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             --EEE-TTSSEEEEE-
T ss_pred             CeEEEccCCeEEEEEe
Confidence            6688899999998775

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK13684 Ycf48-like protein; Provisional

Probab=96.23  E-value=0.52  Score=38.48  Aligned_cols=113  Identities=13%  Similarity=0.068  Sum_probs=65.9

Q ss_pred             ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC
Q 022019          175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  254 (304)
                      .++++.+.++++.++++..|.+.+=... .+..+.....   ........+.++.+.| .+.+++ ++.+|.+.. ....
T Consensus       216 ~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G~sW~~~~~---~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~~-S~d~  288 (334)
T PRK13684        216 RLQSMGFQPDGNLWMLARGGQIRFNDPD-DLESWSKPII---PEITNGYGYLDLAYRT-PGEIWA-GGGNGTLLV-SKDG  288 (334)
T ss_pred             cceeeeEcCCCCEEEEecCCEEEEccCC-CCCccccccC---CccccccceeeEEEcC-CCCEEE-EcCCCeEEE-eCCC
Confidence            7889999999998888888876532222 2222221111   0011123477889998 555554 455676553 3344


Q ss_pred             ceEeEEec---cccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          255 MELLYVLH---GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       255 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      ++.-....   .-....+.+.|..+++.+++|  ..|.|.-|+-.
T Consensus       289 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~G~il~~~~~  331 (334)
T PRK13684        289 GKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG--QRGVLLRYVGS  331 (334)
T ss_pred             CCCCeECCcCCCCCcceEEEEEeCCCceEEEC--CCceEEEecCC
Confidence            44333332   222357888888777766655  58988877643

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.23  E-value=0.51  Score=38.38  Aligned_cols=172  Identities=19%  Similarity=0.246  Sum_probs=86.6

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCe------EEEeeCCCCCC-ccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKT------LRIFSLPENGI-SYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~------v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      .-+.+++|.+.+++..+++.+.+|.      +..+++..... .......        ....+....+.+...-...+..
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~L~~~~G~~~~~~~~D~Eg   89 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTIL--------DMIPLRDPDGQPFPKNGLDPEG   89 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEec--------cceeccCCCCCcCCcCCCChhH
Confidence            4567899999976656666677777      55555443100 0000000        0000111111222112223344


Q ss_pred             ceeCCCccEEEEEeCC------CCEEEEEcCCCeeeEEeecccc----------cccccceEEEEECCCCcEEEEE----
Q 022019          132 SASDPTSCVFASTTRD------HPIHLWDATTGLLRCTYRAYDA----------VDEITAAFSVAFNPTGTKIFAG----  191 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~----------~~~~~~v~~i~~~~~~~~l~~~----  191 (304)
                      +++.+++.++++.-.+      ..|+.++.. |+....+..+..          ........+|+++|+|+.|++.    
T Consensus        90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~  168 (326)
T PF13449_consen   90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESP  168 (326)
T ss_pred             eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECcc
Confidence            4555677777777666      778888866 666555533221          1233468899999999955532    


Q ss_pred             --cCC--e-------EEEEEcC--CCCccceeeeeeeccc--cccccceeEEEeecCCCcEEEE
Q 022019          192 --YNK--S-------VRVFDVH--RPGRDFEKYSTLKGNK--EGQAGIMSAIAFSPTHTGMLAI  240 (304)
Q Consensus       192 --~d~--~-------i~v~d~~--~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~  240 (304)
                        .|+  .       ++++...  ..+.....+.......  ......+..+.+-| ++.+|+.
T Consensus       169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~-d~~lLvL  231 (326)
T PF13449_consen  169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP-DGRLLVL  231 (326)
T ss_pred             ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC-CCcEEEE
Confidence              222  1       4555444  3222222222111110  01345588899998 5555543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.23  E-value=0.00055  Score=56.04  Aligned_cols=131  Identities=16%  Similarity=0.240  Sum_probs=89.6

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~  212 (304)
                      .+.+.-++.++.+-.+..||- .++.......+.      ....++|+.++..++ .. ..+.+++||+.+...     +
T Consensus        43 ~~e~~nlavaca~tiv~~YD~-agq~~le~n~tg------~aldm~wDkegdvlavlAek~~piylwd~n~eyt-----q  110 (615)
T KOG2247|consen   43 RPEGHNLAVACANTIVIYYDK-AGQVILELNPTG------KALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-----Q  110 (615)
T ss_pred             ecCCCceehhhhhhHHHhhhh-hcceecccCCch------hHhhhhhccccchhhhhhhcCCCeeechhhhhhH-----H
Confidence            345555888888888889984 344433333322      556789999888877 34 889999999976311     1


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEE
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  281 (304)
                      ++... ..+.  -.-+.|++ +...++.+...|.+.|++....+.+...-.|...+++++|.+.+..+.
T Consensus       111 qLE~g-g~~s--~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  111 QLESG-GTSS--KSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             HHhcc-Ccch--HHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence            11111 1112  22278999 888899999999999999887766555544888999999998876544

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.21  E-value=0.75  Score=40.15  Aligned_cols=56  Identities=9%  Similarity=0.115  Sum_probs=35.7

Q ss_pred             CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       245 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      |.|.-+|+.+++..-..........+... -.|..++.+. .+|.++.+|.++|+.+.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~-t~g~lvf~g~-~~G~l~a~D~~TGe~lw  496 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLA-TAGDLVFYGT-LEGYFKAFDAKTGEELW  496 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceE-ECCcEEEEEC-CCCeEEEEECCCCCEeE
Confidence            45677777777766655422211112111 2455677777 89999999999998764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.02  E-value=0.24  Score=46.33  Aligned_cols=169  Identities=11%  Similarity=0.137  Sum_probs=91.0

Q ss_pred             eeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEE-eecCccceeCCCccE
Q 022019           63 LKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF-CWFPHMSASDPTSCV  140 (304)
Q Consensus        63 V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~  140 (304)
                      =+.+-+-|. ++.-+  +-|+.+.+|+..++..........                 ..|..+ -..|....|.|.=++
T Consensus        81 ~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~s-----------------htIl~V~LvkPkpgvFv~~Iqh  141 (1311)
T KOG1900|consen   81 KTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLS-----------------HTILKVGLVKPKPGVFVPEIQH  141 (1311)
T ss_pred             eeeeccchhhcceEE--EeCCeEEEEEcCCCCccccccchh-----------------hhheeeeeecCCCCcchhhhhe
Confidence            334444453 33333  347889999998743322222111                 111111 122333334444445


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeE-------EeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccce----
Q 022019          141 FASTTRDHPIHLWDATTGLLRC-------TYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFE----  209 (304)
Q Consensus       141 l~~~~~dg~i~i~d~~~~~~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~----  209 (304)
                      +++.+.--.|.++-+.-.+...       .+....   ....|.++....+|+.+++|.||.++=.-......-+.    
T Consensus       142 lLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~---dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~  218 (1311)
T KOG1900|consen  142 LLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV---DGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCR  218 (1311)
T ss_pred             eEEecccceEEEEEEEeccccCcccccccceeeec---CCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccc
Confidence            5555555556666543221110       111111   12278899988899999999888554332222111000    


Q ss_pred             -----------eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC
Q 022019          210 -----------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (304)
Q Consensus       210 -----------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  254 (304)
                                 ....+......+..+|..++... ...++.+-++.|+|.+||+..
T Consensus       219 Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  219 KICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-ccceeeeeccCceEEEEEccC
Confidence                       00111112235667899999998 777999999999999999975

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.00  E-value=0.57  Score=36.87  Aligned_cols=223  Identities=13%  Similarity=0.134  Sum_probs=112.5

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEee------cCCeEEEEeecCcc-cee
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT------EGESVYDFCWFPHM-SAS  134 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~-~~~  134 (304)
                      .-+.|+++|.+.+-++....+...+||..........         ..  ..+.+.      .....+.+.|+... ..+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~---------~~--L~vtiP~~~~~~~~~~PTGiVfN~~~~F~v   92 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ---------DP--LVVVIPAPPPLAAEGTPTGQVFNGSDTFVV   92 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCc---------cc--eEEEecCCCCCCCCCCccEEEEeCCCceEE
Confidence            4678999999988787777889999998622110000         00  001111      01223344443221 111


Q ss_pred             CCC----ccEEEEEeCCCCEEEEEcCCCee---eEEeecccccccccceEEEEECC--CCcEEEEE--cCCeEEEEEcCC
Q 022019          135 DPT----SCVFASTTRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNP--TGTKIFAG--YNKSVRVFDVHR  203 (304)
Q Consensus       135 ~~~----~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~--~d~~i~v~d~~~  203 (304)
                      +..    ...++.+++||+|.-|...-+..   ...+..... .....-..+++-.  .+.+|++.  ..++|.|||-.-
T Consensus        93 t~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s-~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f  171 (336)
T TIGR03118        93 SGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDAS-QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF  171 (336)
T ss_pred             cCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccC-CCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence            221    12478889999999998543222   111111111 0111233455543  46777754  889999998754


Q ss_pred             CCccceeeeeeecc-ccccccc-----------eeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec--cccCCeE
Q 022019          204 PGRDFEKYSTLKGN-KEGQAGI-----------MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVT  269 (304)
Q Consensus       204 ~~~~~~~~~~~~~~-~~~~~~~-----------v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~  269 (304)
                      .....  -..+... ......+           |+-..-.+ +.+.=+.|...|.|-+||+ .+..++.+.  +.-..-+
T Consensus       172 ~~~~~--~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPW  247 (336)
T TIGR03118       172 RPPPL--PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPW  247 (336)
T ss_pred             ccccC--CCCccCCCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCc
Confidence            21100  0000000 0000011           11111122 1222233444578999997 577777774  2222345


Q ss_pred             EEEECC------CCcEEEEeeccCCeEEEEecccceee
Q 022019          270 HVQFSR------DGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       270 ~~~~~~------~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      .|+..|      .|. |+.|.-.||+|..||..+++.+
T Consensus       248 G~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~sG~~~  284 (336)
T TIGR03118       248 GLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQSGAQL  284 (336)
T ss_pred             eeeeChhhhCCCCCC-eEEeecCCceeEEecCCCCcee
Confidence            566644      344 4445558999999999887643

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.95  E-value=0.042  Score=29.00  Aligned_cols=31  Identities=23%  Similarity=0.239  Sum_probs=25.3

Q ss_pred             CCeEEEEECCCCc---EEEEeeccCCeEEEEeccc
Q 022019          266 GGVTHVQFSRDGN---YLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       266 ~~v~~~~~~~~~~---~l~~~~~~d~~i~vwd~~~  297 (304)
                      +.|.++.|+|...   +|+.+- .-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E-~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAE-HQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEc-cCCeEEEEEccc
Confidence            4689999998554   677766 889999999995

It contains a characteristic DLL sequence motif.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.89  E-value=0.059  Score=40.09  Aligned_cols=106  Identities=11%  Similarity=0.108  Sum_probs=58.5

Q ss_pred             CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCE
Q 022019           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI  150 (304)
Q Consensus        71 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i  150 (304)
                      -+..++.|+.+|.|.+|+.............                ....+.++  .|    .-.++.+..+++.||.|
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s----------------~~e~i~~~--Ip----~~~~~~~~c~~~~dg~i  126 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS----------------GEESIDLG--IP----NGRDSSLGCVGAQDGRI  126 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhc----------------ccccceec--cc----cccccceeEEeccCCce
Confidence            3457888999999999988622211111000                00111111  01    12245578889999999


Q ss_pred             EEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-E--EcCCeEEEEEcC
Q 022019          151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A--GYNKSVRVFDVH  202 (304)
Q Consensus       151 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~--~~d~~i~v~d~~  202 (304)
                      +.|++.-.+.+.....+..    .++.....+..+++++ +  +.|..++.|++.
T Consensus       127 r~~n~~p~k~~g~~g~h~~----~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  127 RACNIKPNKVLGYVGQHNF----ESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeeccccCceeeeeccccC----CCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            9999987766655443331    1333334444444444 3  456666666664

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.79  E-value=0.54  Score=35.01  Aligned_cols=146  Identities=13%  Similarity=0.182  Sum_probs=81.2

Q ss_pred             cEEEEEeCCCCEEEEEcCC--CeeeEEeecccccccccceEEEEECCCCcEEEEE----cCC---eEEEE---EcCCCCc
Q 022019          139 CVFASTTRDHPIHLWDATT--GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG----YNK---SVRVF---DVHRPGR  206 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~----~d~---~i~v~---d~~~~~~  206 (304)
                      ..|+.+...+.|.+|++..  .+....+...+      .|..+.++..|+++++=    ...   .+++|   .......
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~------~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~  102 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVG------RVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEEN  102 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchh------heeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccC
Confidence            3454446677899999983  33445555443      88999999999999952    222   45664   2221111


Q ss_pred             cceeeee----------------eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE-eE-----Eec--
Q 022019          207 DFEKYST----------------LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LY-----VLH--  262 (304)
Q Consensus       207 ~~~~~~~----------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~-----~~~--  262 (304)
                      ..-....                +.-..-.-..++.+++-.|..|.++ +|+ ++.+.+|.+..... ..     .|.  
T Consensus       103 ~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~  180 (215)
T PF14761_consen  103 SPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQTIQSEKFSFLDFERS  180 (215)
T ss_pred             CcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEEEecccccEEechhh
Confidence            0000000                0000011233577888888666554 444 46888998764432 11     111  


Q ss_pred             ---cccC-CeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          263 ---GQEG-GVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       263 ---~~~~-~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                         -|.+ ....+++.  +.|+|..+  +-.+++..+.
T Consensus       181 l~~~~~~~~p~~v~ic--~~yiA~~s--~~ev~Vlkl~  214 (215)
T PF14761_consen  181 LIDHIDNFKPTQVAIC--EGYIAVMS--DLEVLVLKLE  214 (215)
T ss_pred             hhheecCceEEEEEEE--eeEEEEec--CCEEEEEEEe
Confidence               1111 24556664  67888876  6778887764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.78  E-value=0.88  Score=37.36  Aligned_cols=150  Identities=16%  Similarity=0.145  Sum_probs=72.7

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEE--CCCCcEEEEE----cC---------------
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF--NPTGTKIFAG----YN---------------  193 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~----~d---------------  193 (304)
                      +++++.++-......|+-.|+++.+....+..+..     .+-...|  +.++..++..    .|               
T Consensus        89 s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~-----~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~  163 (386)
T PF14583_consen   89 SPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDD-----WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE  163 (386)
T ss_dssp             -TTSSEEEEEETTTEEEEEETTT--EEEEEE--TT-----EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred             ecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcc-----cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence            56677776665667889999999887777776654     3333444  5567776621    11               


Q ss_pred             ----CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec------CCeEEEEecCCceEeEEecc
Q 022019          194 ----KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLYVLHG  263 (304)
Q Consensus       194 ----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~  263 (304)
                          ..|.-.|+.+++  .+   .+    ......+..+.|+|.+..+|+-|-+      |..|.+.+.. +.....+..
T Consensus       164 a~p~~~i~~idl~tG~--~~---~v----~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~  233 (386)
T PF14583_consen  164 ARPHCRIFTIDLKTGE--RK---VV----FEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHR  233 (386)
T ss_dssp             C---EEEEEEETTT----EE---EE----EEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS-
T ss_pred             hCCCceEEEEECCCCc--ee---EE----EecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeec
Confidence                124444554421  11   11    1123457789999987877777765      2234444433 333333332


Q ss_pred             cc--CCeEEEEECCCCcEEEEee----ccCCeEEEEecccce
Q 022019          264 QE--GGVTHVQFSRDGNYLYTGG----RKDPYILCWDLRKAV  299 (304)
Q Consensus       264 ~~--~~v~~~~~~~~~~~l~~~~----~~d~~i~vwd~~~~~  299 (304)
                      +.  ..+..=-|.|||..|.--+    ..+..|.-+|+.+++
T Consensus       234 ~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  234 RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             --TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred             CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence            22  2345556899998765432    134567777777764

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.70  E-value=1.2  Score=39.24  Aligned_cols=146  Identities=15%  Similarity=0.212  Sum_probs=74.0

Q ss_pred             CccEEEEEeCC------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCC-----eEEEEEcCCC
Q 022019          137 TSCVFASTTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK-----SVRVFDVHRP  204 (304)
Q Consensus       137 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~-----~i~v~d~~~~  204 (304)
                      ++.++++|+.|      .++..||.+..+... .........  . .+++.. +|...++| .||     +|..||.++.
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~--~-~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~  406 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRS--D-FGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTN  406 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccc--c-ceeEEE-CCEEEEEeccccccccccEEEecCCCC
Confidence            56788899888      357788888776433 221111111  1 112211 35555544 665     4777887652


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC------eEEEEecCCce--EeEEeccccCCeEEEEECCC
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ------TSAIYREDNME--LLYVLHGQEGGVTHVQFSRD  276 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg------~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~  276 (304)
                        .+.....+.    .   .........-++.++++|+.++      ++..||..+++  .+..+..-........+  +
T Consensus       407 --~W~~va~m~----~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~  475 (571)
T KOG4441|consen  407 --KWTPVAPML----T---RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--N  475 (571)
T ss_pred             --cccccCCCC----c---ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--C
Confidence              121111111    1   1112222222677888888654      47788887654  33333322222222333  4


Q ss_pred             CcEEEEeeccCC-----eEEEEecccce
Q 022019          277 GNYLYTGGRKDP-----YILCWDLRKAV  299 (304)
Q Consensus       277 ~~~l~~~~~~d~-----~i~vwd~~~~~  299 (304)
                      +...+.|| .|+     ++..||..+.+
T Consensus       476 ~~iYvvGG-~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  476 GKIYVVGG-FDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             CEEEEECC-ccCCCccceEEEEcCCCCc
Confidence            66666666 665     36667776643

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.64  E-value=1  Score=37.03  Aligned_cols=141  Identities=13%  Similarity=0.044  Sum_probs=69.8

Q ss_pred             ccceeCCCccEEEEEeC-CC--CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCC
Q 022019          130 HMSASDPTSCVFASTTR-DH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPG  205 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~  205 (304)
                      ..-.|.++|+.|+.++. ||  .+++.|+.+++..+.-.....     ...+..++|+++.++ .-.+..++-.|+++.+
T Consensus        39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~-----~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e  113 (386)
T PF14583_consen   39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD-----NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE  113 (386)
T ss_dssp             TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B------TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred             cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC-----CccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence            33456788866555544 54  577888988887665443322     222456678877776 6677789999998742


Q ss_pred             ccceeeeeeeccccccccceeEEEee-cCCCcEEEEEec----------------------CCeEEEEecCCceEeEEec
Q 022019          206 RDFEKYSTLKGNKEGQAGIMSAIAFS-PTHTGMLAIGSY----------------------SQTSAIYREDNMELLYVLH  262 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~----------------------dg~i~i~d~~~~~~~~~~~  262 (304)
                      .  ..+...      ....+....|. +.++..++-.-.                      ...|.-.|+.+++....+.
T Consensus       114 ~--~~vy~~------p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~  185 (386)
T PF14583_consen  114 E--RVVYEV------PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE  185 (386)
T ss_dssp             E--EEEEE--------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE
T ss_pred             E--EEEEEC------CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe
Confidence            1  122222      12223334453 223433322211                      1135556777776544444


Q ss_pred             cccCCeEEEEECCCCcEEEEee
Q 022019          263 GQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       263 ~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                       -..++..+.|+|....+++=+
T Consensus       186 -~~~wlgH~~fsP~dp~li~fC  206 (386)
T PF14583_consen  186 -DTDWLGHVQFSPTDPTLIMFC  206 (386)
T ss_dssp             -ESS-EEEEEEETTEEEEEEEE
T ss_pred             -cCccccCcccCCCCCCEEEEe
Confidence             456788999999776655544

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.58  E-value=0.14  Score=38.74  Aligned_cols=68  Identities=10%  Similarity=0.084  Sum_probs=48.8

Q ss_pred             CCccEEEEEeCCCCEEEEEcCCCeeeEEe-eccccc--------ccccceEEEEECCCCcEEEEEcCCeEEEEEcCC
Q 022019          136 PTSCVFASTTRDHPIHLWDATTGLLRCTY-RAYDAV--------DEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR  203 (304)
Q Consensus       136 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~--------~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~  203 (304)
                      ..+.++++...+|.+++||+.+++....- ....-.        .....|..+.++.+|.-+++=.+|..+.|+...
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L   96 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL   96 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence            36778999999999999999987754332 111100        233478889999888877765678889998765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.56  E-value=0.16  Score=38.45  Aligned_cols=63  Identities=8%  Similarity=0.019  Sum_probs=48.9

Q ss_pred             CCcEEEEEecCCeEEEEecCCceEeEEe-------c-------cccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          234 HTGMLAIGSYSQTSAIYREDNMELLYVL-------H-------GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       234 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      .+.++++-+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-|++-+  +|..+.|+..-+
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls--ng~~y~y~~~L~   97 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS--NGDSYSYSPDLG   97 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe--CCCEEEeccccc
Confidence            5567999999999999999988754332       1       2446789999999998887766  688899987654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.51  E-value=1.1  Score=36.56  Aligned_cols=112  Identities=17%  Similarity=0.202  Sum_probs=53.0

Q ss_pred             CccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecc-c-ccccccceEEEEECCC---CcEEE-EEc-C--------
Q 022019          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-D-AVDEITAAFSVAFNPT---GTKIF-AGY-N--------  193 (304)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~-~~~~~~~v~~i~~~~~---~~~l~-~~~-d--------  193 (304)
                      |..+++.|+|+++++ ...|.|++++ ..+.....+... . ..........++++|+   ..+|+ +.. .        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            334455788877665 5699999999 455442222111 1 1122347789999994   34444 222 1        


Q ss_pred             CeEEEEEcCCCCccceeeeeeecccc---ccccceeEEEeecCCCcEEEEEec
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKE---GQAGIMSAIAFSPTHTGMLAIGSY  243 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~  243 (304)
                      ..|.-|..............+.....   .....-..|.|.| ++.++++.+.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~  133 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCC
Confidence            23444554433112221122211111   1222355799999 5555555544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.43  E-value=0.5  Score=32.21  Aligned_cols=121  Identities=11%  Similarity=0.024  Sum_probs=73.2

Q ss_pred             eEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEE
Q 022019           64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS  143 (304)
Q Consensus        64 ~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  143 (304)
                      ..-+|......|+.++.-|.|.|++..........          .......+.-+..|++++-.+-..  +.+...|+.
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~----------~~~~i~~LNin~~italaaG~l~~--~~~~D~Lli   69 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR----------QDSDISFLNINQEITALAAGRLKP--DDGRDCLLI   69 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCcccccccc----------ccCceeEEECCCceEEEEEEecCC--CCCcCEEEE
Confidence            34567766678888999999999987644321110          111123344456677765433211  234456777


Q ss_pred             EeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECC----CCcEEEEEcCCeEEEEEcCC
Q 022019          144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP----TGTKIFAGYNKSVRVFDVHR  203 (304)
Q Consensus       144 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~----~~~~l~~~~d~~i~v~d~~~  203 (304)
                      |+.. .+..||+.....+.....+.      .|.++.+-.    +...+++|.+..|.-||...
T Consensus        70 Gt~t-~llaYDV~~N~d~Fyke~~D------Gvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G  126 (136)
T PF14781_consen   70 GTQT-SLLAYDVENNSDLFYKEVPD------GVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG  126 (136)
T ss_pred             eccc-eEEEEEcccCchhhhhhCcc------ceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence            7654 59999998776554333333      566666622    34566688888888888754

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.41  E-value=0.77  Score=41.47  Aligned_cols=75  Identities=11%  Similarity=0.092  Sum_probs=49.2

Q ss_pred             ceeEEEeecCCCcEEEEEecCCeEEEEecC---------CceE--e-EEe--------ccccCCeEEEEECCC---CcEE
Q 022019          224 IMSAIAFSPTHTGMLAIGSYSQTSAIYRED---------NMEL--L-YVL--------HGQEGGVTHVQFSRD---GNYL  280 (304)
Q Consensus       224 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~---------~~~~--~-~~~--------~~~~~~v~~~~~~~~---~~~l  280 (304)
                      .|..+.++| .+.+++..+..|.+.+.=.+         .++.  . .++        ..+...|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~-~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNP-TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECC-CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            488999999 67777777776654332211         1111  1 111        123457999999997   4778


Q ss_pred             EEeeccCCeEEEEeccccee
Q 022019          281 YTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       281 ~~~~~~d~~i~vwd~~~~~~  300 (304)
                      +.-. .|+++++||+.....
T Consensus       165 ~vLt-sdn~lR~y~~~~~~~  183 (717)
T PF10168_consen  165 VVLT-SDNTLRLYDISDPQH  183 (717)
T ss_pred             EEEe-cCCEEEEEecCCCCC
Confidence            8777 899999999976543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=95.34  E-value=0.73  Score=33.51  Aligned_cols=36  Identities=19%  Similarity=0.379  Sum_probs=28.7

Q ss_pred             eEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCC
Q 022019          121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT  157 (304)
Q Consensus       121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  157 (304)
                      .+..++|.|..++- ..+.+|++...+|.|.||.-..
T Consensus        87 ~vv~~aWSP~Gl~~-~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGP-NGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCC-CCceEEEEEcCCCeEEEEecCC
Confidence            78899999976642 2467889999999999998663

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.17  E-value=1  Score=34.09  Aligned_cols=117  Identities=11%  Similarity=0.068  Sum_probs=71.7

Q ss_pred             ceEEEEECCCCcEEEEE-cC---------CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC
Q 022019          175 AAFSVAFNPTGTKIFAG-YN---------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS  244 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~-~d---------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  244 (304)
                      ..+.-..+|+|++++.. .|         |.++.|-...   ..+.+       ...-..-..++|+.+...+.++-+.+
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h---~v~~i-------~~~v~IsNgl~Wd~d~K~fY~iDsln  179 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH---QVELI-------WNCVGISNGLAWDSDAKKFYYIDSLN  179 (310)
T ss_pred             ccccCccCCCCceeeeeeccccccccccccEEEEeccCC---Cceee-------ehhccCCccccccccCcEEEEEccCc
Confidence            55677889999996632 22         4455554422   11111       11223346789998667777888888


Q ss_pred             CeEEEEe--cCCc-----eEeEEeccc----cCCeEEEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          245 QTSAIYR--EDNM-----ELLYVLHGQ----EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       245 g~i~i~d--~~~~-----~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      -.|.-||  ..++     +.+..++..    ...--.++...+|...+++- ..++|...|..+|+.++
T Consensus       180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~-ng~~V~~~dp~tGK~L~  247 (310)
T KOG4499|consen  180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF-NGGTVQKVDPTTGKILL  247 (310)
T ss_pred             eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe-cCcEEEEECCCCCcEEE
Confidence            8897787  4444     334444321    11123455566787766666 78899999999998765

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.11  E-value=1.2  Score=34.59  Aligned_cols=146  Identities=11%  Similarity=0.065  Sum_probs=85.5

Q ss_pred             CCccEEEEEeCCC--CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceee
Q 022019          136 PTSCVFASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       136 ~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                      .++.++-+.+.-|  .|+.+|+.+++...........    .-..+....+  .|. .. .++...+||..+.    +..
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~----FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl----~~~  123 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY----FGEGITILGD--KLYQLTWKEGTGFVYDPNTL----KKI  123 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------EEEEEEETT--EEEEEESSSSEEEEEETTTT----EEE
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc----cceeEEEECC--EEEEEEecCCeEEEEccccc----eEE
Confidence            4677788887766  7999999999887766655421    2234555433  444 45 9999999999753    333


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc-----CCeEEEEECCCCcEEEEeecc
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-----GGVTHVQFSRDGNYLYTGGRK  286 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~  286 (304)
                      ..+..  . ..  =..++  . ++..|+.......++++|..+.+....+....     ..++.+.|- +|...|=.= .
T Consensus       124 ~~~~y--~-~E--GWGLt--~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW-~  193 (264)
T PF05096_consen  124 GTFPY--P-GE--GWGLT--S-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW-Q  193 (264)
T ss_dssp             EEEE---S-SS----EEE--E-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET-T
T ss_pred             EEEec--C-Cc--ceEEE--c-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC-C
Confidence            33322  1 12  23455  3 33455555556789999998887766665322     246667775 565444444 6


Q ss_pred             CCeEEEEecccceee
Q 022019          287 DPYILCWDLRKAVQV  301 (304)
Q Consensus       287 d~~i~vwd~~~~~~~  301 (304)
                      ...|...|..+|+.+
T Consensus       194 td~I~~Idp~tG~V~  208 (264)
T PF05096_consen  194 TDRIVRIDPETGKVV  208 (264)
T ss_dssp             SSEEEEEETTT-BEE
T ss_pred             CCeEEEEeCCCCeEE
Confidence            667777788877654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.09  E-value=1.8  Score=36.72  Aligned_cols=58  Identities=12%  Similarity=0.162  Sum_probs=34.4

Q ss_pred             cCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccc--cccccceEEEEECCCC
Q 022019          128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA--VDEITAAFSVAFNPTG  185 (304)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~~  185 (304)
                      .|..++|.|++++|++--..|.|++++..++...........  .........|+++|+-
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            345556688998777655469999998655432221111110  0113478899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.04  E-value=1.8  Score=36.25  Aligned_cols=110  Identities=11%  Similarity=0.042  Sum_probs=65.8

Q ss_pred             ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccce--eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEec
Q 022019          175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFE--KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~  252 (304)
                      .+.++.|.+++..++++..|.+..=+-.  +....  .+.....  ......+.++.|.+ ++..+ +++..|.+..-. 
T Consensus       282 ~l~~v~~~~dg~l~l~g~~G~l~~S~d~--G~~~~~~~f~~~~~--~~~~~~l~~v~~~~-d~~~~-a~G~~G~v~~s~-  354 (398)
T PLN00033        282 RIQNMGWRADGGLWLLTRGGGLYVSKGT--GLTEEDFDFEEADI--KSRGFGILDVGYRS-KKEAW-AAGGSGILLRST-  354 (398)
T ss_pred             ceeeeeEcCCCCEEEEeCCceEEEecCC--CCcccccceeeccc--CCCCcceEEEEEcC-CCcEE-EEECCCcEEEeC-
Confidence            6789999999999998888876553322  11110  1111111  11223478899987 55454 455677666654 


Q ss_pred             CCceEeEEe---ccccCCeEEEEECCCCcEEEEeeccCCeEEEE
Q 022019          253 DNMELLYVL---HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW  293 (304)
Q Consensus       253 ~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vw  293 (304)
                      ..++.-...   ..-...++.+.|.++++.+++|  .+|.|.-|
T Consensus       355 D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G--~~G~il~~  396 (398)
T PLN00033        355 DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG--NDGVLLRY  396 (398)
T ss_pred             CCCcceeEccccCCCCcceeEEEEcCCCceEEEe--CCcEEEEe
Confidence            344432222   2234568999998877766665  58887655

>PHA02790 Kelch-like protein; Provisional

Probab=95.03  E-value=2.1  Score=37.04  Aligned_cols=144  Identities=8%  Similarity=0.012  Sum_probs=69.9

Q ss_pred             CccEEEEEeCC--CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcC---CeEEEEEcCCCCcccee
Q 022019          137 TSCVFASTTRD--HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN---KSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       137 ~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d---~~i~v~d~~~~~~~~~~  210 (304)
                      ++.+.+.|+.+  .++..||..+++....-.....   ......+.+  +|+..+. |.+   ..+..||.++.  .+..
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~---r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~--~W~~  390 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP---RCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHD--QWQF  390 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC---CcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCC--EEEe
Confidence            66777777754  3577888766543322111111   001112222  4555554 433   34677887652  2211


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce--EeEEeccccCCeEEEEECCCCcEEEEeeccC-
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD-  287 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-  287 (304)
                      ...+.   .. .... +++ .- ++.+++.|+   .+.+||.++.+  .+..+.........+.+  +|+..+.|| .+ 
T Consensus       391 ~~~m~---~~-r~~~-~~~-~~-~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG-~~~  457 (480)
T PHA02790        391 GPSTY---YP-HYKS-CAL-VF-GRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGG-FYR  457 (480)
T ss_pred             CCCCC---Cc-cccc-eEE-EE-CCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECC-cCC
Confidence            11111   11 1111 222 22 566777774   57789887654  33333222222333333  567777776 43 


Q ss_pred             ----CeEEEEeccccee
Q 022019          288 ----PYILCWDLRKAVQ  300 (304)
Q Consensus       288 ----~~i~vwd~~~~~~  300 (304)
                          ..+..||..+.+-
T Consensus       458 ~~~~~~ve~Yd~~~~~W  474 (480)
T PHA02790        458 GSYIDTIEVYNNRTYSW  474 (480)
T ss_pred             CcccceEEEEECCCCeE
Confidence                4688888887653

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.01  E-value=0.45  Score=40.24  Aligned_cols=75  Identities=9%  Similarity=0.045  Sum_probs=48.1

Q ss_pred             eeEEEeecCCCcEEEEEecCCeEEEEe---------cCCceEeEEec-----------cccCCeEEEEECCCC---cEEE
Q 022019          225 MSAIAFSPTHTGMLAIGSYSQTSAIYR---------EDNMELLYVLH-----------GQEGGVTHVQFSRDG---NYLY  281 (304)
Q Consensus       225 v~~~~~~p~~~~~l~~~~~dg~i~i~d---------~~~~~~~~~~~-----------~~~~~v~~~~~~~~~---~~l~  281 (304)
                      |..+..+| .|..++-.+.+|.+..+=         ++.+++.-..+           ...-.+..++|+|+.   ..|.
T Consensus       106 V~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  106 VYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            67788889 566677777778655442         12332221111           112257788999976   5666


Q ss_pred             EeeccCCeEEEEecccceee
Q 022019          282 TGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       282 ~~~~~d~~i~vwd~~~~~~~  301 (304)
                      .-. .|++|++||+.....+
T Consensus       185 iL~-sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLT-SDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEe-cCcEEEEEecCCcchh
Confidence            666 7999999999876654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.96  E-value=2.9  Score=38.31  Aligned_cols=221  Identities=14%  Similarity=0.155  Sum_probs=112.3

Q ss_pred             CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc--cc-------eeCCCccEE
Q 022019           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH--MS-------ASDPTSCVF  141 (304)
Q Consensus        71 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~-------~~~~~~~~l  141 (304)
                      .+..|+.++.++.|.-.|..+++.................         .....+.+...  ..       +-...+..+
T Consensus       193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~---------~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV  263 (764)
T TIGR03074       193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQH---------QTCRGVSYYDAPAAAAGPAAPAAPADCARRI  263 (764)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccc---------ccccceEEecCCcccccccccccccccCCEE
Confidence            3557777888899999999888775544332211000000         00011111100  00       001234577


Q ss_pred             EEEeCCCCEEEEEcCCCeeeEEeeccccc------cc-ccceEEEEECC---CCcEEEEEc----------CCeEEEEEc
Q 022019          142 ASTTRDHPIHLWDATTGLLRCTYRAYDAV------DE-ITAAFSVAFNP---TGTKIFAGY----------NKSVRVFDV  201 (304)
Q Consensus       142 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~-~~~v~~i~~~~---~~~~l~~~~----------d~~i~v~d~  201 (304)
                      +.++.|+.+.-.|.++|+....+......      .. ...-..+.-.|   ++..++.+.          +|.|+-+|.
T Consensus       264 ~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da  343 (764)
T TIGR03074       264 ILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDV  343 (764)
T ss_pred             EEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEEC
Confidence            78888999999999999887665432110      00 00001111222   344444321          578999999


Q ss_pred             CCCCccceeeeeeec-c--c-c------ccccceeEEEeecCCCcEEEEEe------------------cCCeEEEEecC
Q 022019          202 HRPGRDFEKYSTLKG-N--K-E------GQAGIMSAIAFSPTHTGMLAIGS------------------YSQTSAIYRED  253 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~-~--~-~------~~~~~v~~~~~~p~~~~~l~~~~------------------~dg~i~i~d~~  253 (304)
                      ++++........-.. .  . .      +....-..++++|..+ +++.+.                  ..+.|.-.|.+
T Consensus       344 ~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~  422 (764)
T TIGR03074       344 NTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDAT  422 (764)
T ss_pred             CCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCcccccceEEEEeCC
Confidence            886543322110000 0  0 0      0001113455666333 333322                  13456667888


Q ss_pred             CceEeEEeccccCCe---------EEEEECC-CCc---EEEEeeccCCeEEEEecccceeee
Q 022019          254 NMELLYVLHGQEGGV---------THVQFSR-DGN---YLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       254 ~~~~~~~~~~~~~~v---------~~~~~~~-~~~---~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      +++..-.++.....+         .-+.+.. +|+   .++.+. ++|.+.+.|-++|+.+.
T Consensus       423 TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~l~  483 (764)
T TIGR03074       423 TGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT-KQGQIYVLDRRTGEPIV  483 (764)
T ss_pred             CCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEEC-CCCEEEEEECCCCCEEe
Confidence            888777665311111         1122322 563   688888 99999999999998764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=94.93  E-value=0.17  Score=26.11  Aligned_cols=30  Identities=20%  Similarity=0.383  Sum_probs=21.6

Q ss_pred             ccCCeEEEEECCCCcEEEEeeccC--CeEEEE
Q 022019          264 QEGGVTHVQFSRDGNYLYTGGRKD--PYILCW  293 (304)
Q Consensus       264 ~~~~v~~~~~~~~~~~l~~~~~~d--~~i~vw  293 (304)
                      ....-....|+|||++|+-++..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            445678899999999988777566  666555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.82  E-value=0.018  Score=51.23  Aligned_cols=99  Identities=11%  Similarity=0.111  Sum_probs=60.7

Q ss_pred             CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecC--CCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEE
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV  271 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~  271 (304)
                      |.+.|||+..-...+.....+ .........+.-+.|.|-  +.-++..+-.++.|++........ ..+.+|..+++.+
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v-~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~  230 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEV-TPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM  230 (1283)
T ss_pred             hhhheeehHhhccccccceEE-eecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence            567888886533222211111 111223334456666652  345667777788888877644322 4455677665554


Q ss_pred             E-----------ECCCCcEEEEeeccCCeEEEEec
Q 022019          272 Q-----------FSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       272 ~-----------~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      +           .||||+.+++++ .||.+++|.+
T Consensus       231 a~~~~g~~~l~~lSpDGtv~a~a~-~dG~v~f~Qi  264 (1283)
T KOG1916|consen  231 AFFAEGVLKLASLSPDGTVFAWAI-SDGSVGFYQI  264 (1283)
T ss_pred             HHHhhchhhheeeCCCCcEEEEee-cCCccceeee
Confidence            4           589999999999 9999999876

>PHA02713 hypothetical protein; Provisional

Probab=94.74  E-value=1.4  Score=38.93  Aligned_cols=144  Identities=8%  Similarity=0.021  Sum_probs=68.2

Q ss_pred             CccEEEEEeCC------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcC-----CeEEEEEcCCC
Q 022019          137 TSCVFASTTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN-----KSVRVFDVHRP  204 (304)
Q Consensus       137 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d-----~~i~v~d~~~~  204 (304)
                      ++.+++.|+.+      ..+..||..+......-.....   .... +++. -+|+..+. |.+     ..+..||..+.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~---R~~~-~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~  377 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN---RCRF-SLAV-IDDTIYAIGGQNGTNVERTIECYTMGDD  377 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch---hhce-eEEE-ECCEEEEECCcCCCCCCceEEEEECCCC
Confidence            56677777753      3477889877654221111110   0011 2222 24555554 444     24788998752


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC-----------------------eEEEEecCCce--EeE
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----------------------TSAIYREDNME--LLY  259 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----------------------~i~i~d~~~~~--~~~  259 (304)
                        .+.....+....    .....+.+   ++.+++.|+.++                       .+..||..+.+  .+.
T Consensus       378 --~W~~~~~mp~~r----~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~  448 (557)
T PHA02713        378 --KWKMLPDMPIAL----SSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP  448 (557)
T ss_pred             --eEEECCCCCccc----ccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC
Confidence              222211111111    11112222   566888887652                       47788877654  233


Q ss_pred             EeccccCCeEEEEECCCCcEEEEeeccC------CeEEEEeccc
Q 022019          260 VLHGQEGGVTHVQFSRDGNYLYTGGRKD------PYILCWDLRK  297 (304)
Q Consensus       260 ~~~~~~~~v~~~~~~~~~~~l~~~~~~d------~~i~vwd~~~  297 (304)
                      .+.........+.+  +|+..+.|| .+      ..+..||..+
T Consensus       449 ~m~~~r~~~~~~~~--~~~IYv~GG-~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        449 NFWTGTIRPGVVSH--KDDIYVVCD-IKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             CCCcccccCcEEEE--CCEEEEEeC-CCCCCccceeEEEecCCC
Confidence            33211111122222  456555565 43      2466788876

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.70  E-value=2  Score=35.70  Aligned_cols=103  Identities=14%  Similarity=0.241  Sum_probs=55.7

Q ss_pred             ceEEEEECCCCcEEEEEc------------CC-eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEE
Q 022019          175 AAFSVAFNPTGTKIFAGY------------NK-SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG  241 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~~------------d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  241 (304)
                      ....|+|+++|+++++..            .+ .|.+++-............+...    ......+++.+ ++ +++ +
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~----l~~p~Gi~~~~-~G-lyV-~   87 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE----LSMVTGLAVAV-GG-VYV-A   87 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC----CCCccceeEec-CC-EEE-e
Confidence            556899999999887631            22 67777644322222222222211    22357889988 66 444 4


Q ss_pred             ecCCeEEEEecCC-------ce-EeEEecc----ccCCeEEEEECCCCcEEEEee
Q 022019          242 SYSQTSAIYREDN-------ME-LLYVLHG----QEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       242 ~~dg~i~i~d~~~-------~~-~~~~~~~----~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      +.....++.|...       .+ .+..+..    +......+.|.|||.+.++.+
T Consensus        88 ~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        88 TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            4443333445432       11 2222322    134578899999998655544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.67  E-value=3.1  Score=37.33  Aligned_cols=165  Identities=8%  Similarity=0.054  Sum_probs=88.2

Q ss_pred             ecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeE------Eeecc-------cc----cccccceEEEEECC--CCcE
Q 022019          127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC------TYRAY-------DA----VDEITAAFSVAFNP--TGTK  187 (304)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~-------~~----~~~~~~v~~i~~~~--~~~~  187 (304)
                      |.-+..+.+. +.+++++. .+.|.||++..-....      .+...       ..    ......|+.|....  ....
T Consensus        39 fKNNLtalsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EV  116 (717)
T PF08728_consen   39 FKNNLTALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEV  116 (717)
T ss_pred             cccceeEEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeE
Confidence            4333333343 55666655 6789999986432211      11000       00    00112455554443  2345


Q ss_pred             EEE-EcCCeEEEEEcCCCCccceee----------eee-eccccccccceeEEEee--cCCCcEEEEEecCCeEEEEecC
Q 022019          188 IFA-GYNKSVRVFDVHRPGRDFEKY----------STL-KGNKEGQAGIMSAIAFS--PTHTGMLAIGSYSQTSAIYRED  253 (304)
Q Consensus       188 l~~-~~d~~i~v~d~~~~~~~~~~~----------~~~-~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~dg~i~i~d~~  253 (304)
                      |++ ..||.|.+|.++.--..+...          ..+ ............+++++  . ..++||+++....|.||-..
T Consensus       117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~  195 (717)
T PF08728_consen  117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFA  195 (717)
T ss_pred             EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEEEEecCCceEEEEEEe
Confidence            554 499999999773210000000          000 00001122357788988  6 67788888888888887554


Q ss_pred             Cc--e-EeEEeccccCCeEEEEECCCC-----c-EEEEeeccCCeEEEEec
Q 022019          254 NM--E-LLYVLHGQEGGVTHVQFSRDG-----N-YLYTGGRKDPYILCWDL  295 (304)
Q Consensus       254 ~~--~-~~~~~~~~~~~v~~~~~~~~~-----~-~l~~~~~~d~~i~vwd~  295 (304)
                      ..  + ....-..|...|-+++|-++.     . +|++++ -.|.+.+|++
T Consensus       196 l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d-I~G~v~~~~I  245 (717)
T PF08728_consen  196 LVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD-ISGEVWTFKI  245 (717)
T ss_pred             ccccccccccccccccCCCeeEeecCCCCCccceEEEEEe-ccCcEEEEEE
Confidence            32  1 111111255678899996543     2 677777 8999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.66  E-value=0.33  Score=35.34  Aligned_cols=31  Identities=19%  Similarity=0.299  Sum_probs=25.5

Q ss_pred             ceeEEEeecC-----CCcEEEEEecCCeEEEEecCC
Q 022019          224 IMSAIAFSPT-----HTGMLAIGSYSQTSAIYREDN  254 (304)
Q Consensus       224 ~v~~~~~~p~-----~~~~l~~~~~dg~i~i~d~~~  254 (304)
                      .+..++|||.     .+-+|++.+.+|.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            6889999993     245899999999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PRK13684 Ycf48-like protein; Provisional

Probab=94.55  E-value=2.2  Score=34.92  Aligned_cols=106  Identities=9%  Similarity=0.117  Sum_probs=62.3

Q ss_pred             ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC
Q 022019          175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  254 (304)
                      .+..+.+.|++.+++++..|.+..- .+..+..+...   .   ......++++.+.| ++.++++| ..|.+.+=..+.
T Consensus       174 ~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~---~---~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~  244 (334)
T PRK13684        174 VVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPH---Q---RNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDD  244 (334)
T ss_pred             eEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEe---e---CCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCC
Confidence            6789999999988888888866542 11222222211   1   22345688999999 56566554 567665433344


Q ss_pred             ceEeEEecc----ccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          255 MELLYVLHG----QEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       255 ~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                      +..-.....    ....+.++.+.|++..++++  .+|.+.
T Consensus       245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G--~~G~v~  283 (334)
T PRK13684        245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG--GNGTLL  283 (334)
T ss_pred             CCccccccCCccccccceeeEEEcCCCCEEEEc--CCCeEE
Confidence            432222221    12357889999988766554  467554

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.43  E-value=1  Score=30.76  Aligned_cols=111  Identities=11%  Similarity=0.115  Sum_probs=64.5

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCe--------eeEEeecccccccccceEEE---EECC--CCcEEEEEcCCeEEEEEc
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGL--------LRCTYRAYDAVDEITAAFSV---AFNP--TGTKIFAGYNKSVRVFDV  201 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~~~~~v~~i---~~~~--~~~~l~~~~d~~i~v~d~  201 (304)
                      +.....|+.++..|+|.|++.....        .+..+....      .|+++   .|.|  ....|+.|....+..||+
T Consensus         7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~------~italaaG~l~~~~~~D~LliGt~t~llaYDV   80 (136)
T PF14781_consen    7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ------EITALAAGRLKPDDGRDCLLIGTQTSLLAYDV   80 (136)
T ss_pred             CCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC------ceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence            3344468888889999999876432        223333322      55555   4443  346777899999999999


Q ss_pred             CCCCccceeeeeeeccccccccceeEEEeec---CCCcEEEEEecCCeEEEEecCCceEeEEe
Q 022019          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP---THTGMLAIGSYSQTSAIYREDNMELLYVL  261 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  261 (304)
                      ......+.         +.-...+.++.+-.   ....+++ .+.+..|.-||....+...+.
T Consensus        81 ~~N~d~Fy---------ke~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   81 ENNSDLFY---------KEVPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             ccCchhhh---------hhCccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCcEEEEEe
Confidence            87543222         11223466665532   1233444 444667888887655554443

>PRK10115 protease 2; Provisional

Probab=94.42  E-value=3.4  Score=37.55  Aligned_cols=111  Identities=7%  Similarity=0.015  Sum_probs=63.4

Q ss_pred             ceEEEEECCCCcEEEEE--cCC----eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC----
Q 022019          175 AAFSVAFNPTGTKIFAG--YNK----SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS----  244 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~--~d~----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----  244 (304)
                      .+..+.++|++++|+.+  .+|    .|++.|+.++..       +.....+.   -..++|.+++..++++...+    
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~-------l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~  197 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW-------YPELLDNV---EPSFVWANDSWTFYYVRKHPVTLL  197 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC-------CCccccCc---ceEEEEeeCCCEEEEEEecCCCCC
Confidence            56678999999999944  222    488888875311       11111111   14589999655555554432    


Q ss_pred             -CeEEEEecCCc--eEeEEeccccCCeE-EEEECCCCcEEEEee--ccCCeEEEEec
Q 022019          245 -QTSAIYREDNM--ELLYVLHGQEGGVT-HVQFSRDGNYLYTGG--RKDPYILCWDL  295 (304)
Q Consensus       245 -g~i~i~d~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~--~~d~~i~vwd~  295 (304)
                       ..|+.+++.++  +-...+........ .+..+.++++++..+  ..++.+.+++.
T Consensus       198 ~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        198 PYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence             35788888876  32223332223233 334455888765444  23457888884

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.31  E-value=2.1  Score=35.80  Aligned_cols=117  Identities=9%  Similarity=0.078  Sum_probs=71.1

Q ss_pred             cceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEec
Q 022019          174 TAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (304)
Q Consensus       174 ~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~  252 (304)
                      ++|.++.|++|.+.+|+- .+..|.+++............    ........|..+.|+. + .-+|..+..| +.+|-.
T Consensus        67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~----~ck~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v  139 (657)
T KOG2377|consen   67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ----ECKTKNANILGFCWTS-S-TEIAFITDQG-IEFYQV  139 (657)
T ss_pred             CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH----HhccCcceeEEEEEec-C-eeEEEEecCC-eEEEEE
Confidence            389999999999999987 999999999854322211111    1122334488899987 4 3455555444 556654


Q ss_pred             CCc-eEeEEeccccCCeEEEEECCCCcEEEEeec-cCCeEEEEeccc
Q 022019          253 DNM-ELLYVLHGQEGGVTHVQFSRDGNYLYTGGR-KDPYILCWDLRK  297 (304)
Q Consensus       253 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~d~~i~vwd~~~  297 (304)
                      ... ..+...+.|.-.|.=..|.++-+.++-++. ..+++.=+.+++
T Consensus       140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             chhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence            332 234445567777777888888776444331 334444444443

>PHA03098 kelch-like protein; Provisional

Probab=94.26  E-value=1.8  Score=38.00  Aligned_cols=146  Identities=11%  Similarity=0.081  Sum_probs=68.2

Q ss_pred             CccEEEEEeCCC------CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcC-----CeEEEEEcCCC
Q 022019          137 TSCVFASTTRDH------PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-----KSVRVFDVHRP  204 (304)
Q Consensus       137 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d-----~~i~v~d~~~~  204 (304)
                      ++.+++.|+.++      .+..||..+.+....-.....   ......+.+  +++.++ +|.+     ..+..||..+.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~  368 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP---RKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGES  368 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc---cccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence            556677776542      577888877665322111111   111222222  455555 4433     34677887652


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC------CeEEEEecCCceE--eEEeccccCCeEEEEECCC
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMEL--LYVLHGQEGGVTHVQFSRD  276 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~  276 (304)
                        .+.....+..   +... . +++..  ++.+++.|+.+      ..+..||+.+.+-  +..+.........+.  .+
T Consensus       369 --~W~~~~~lp~---~r~~-~-~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~  437 (534)
T PHA03098        369 --KWREEPPLIF---PRYN-P-CVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY--HD  437 (534)
T ss_pred             --ceeeCCCcCc---CCcc-c-eEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE--EC
Confidence              2222111111   1111 1 22222  55677777732      4588999876542  222221111112222  24


Q ss_pred             CcEEEEeeccC--------CeEEEEecccce
Q 022019          277 GNYLYTGGRKD--------PYILCWDLRKAV  299 (304)
Q Consensus       277 ~~~l~~~~~~d--------~~i~vwd~~~~~  299 (304)
                      +...+.|| .+        ..+.+||..+.+
T Consensus       438 ~~iyv~GG-~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        438 GKIYVIGG-ISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             CEEEEECC-ccCCCCCcccceEEEecCCCCc
Confidence            56666665 32        237888887654

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.18  E-value=0.37  Score=25.21  Aligned_cols=41  Identities=17%  Similarity=0.128  Sum_probs=27.8

Q ss_pred             cCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEE
Q 022019          232 PTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF  273 (304)
Q Consensus       232 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  273 (304)
                      |+++.++++...++.|.++|..+++.+..+... ..-..+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            434555555666899999999999888887753 22344544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.03  E-value=5  Score=37.08  Aligned_cols=123  Identities=11%  Similarity=0.092  Sum_probs=76.5

Q ss_pred             ceEEEEEC---C----CCcEEEEEcCCeEEEEEcCCC------Ccc-----ceeeeeeeccccccccceeEEEeecCCCc
Q 022019          175 AAFSVAFN---P----TGTKIFAGYNKSVRVFDVHRP------GRD-----FEKYSTLKGNKEGQAGIMSAIAFSPTHTG  236 (304)
Q Consensus       175 ~v~~i~~~---~----~~~~l~~~~d~~i~v~d~~~~------~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  236 (304)
                      +|..|.|.   .    ..+.|++=....+.|+...-.      ...     ...+..+... .....+...++|+|.+..
T Consensus        81 PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~-~tgg~~~aDv~FnP~~~~  159 (765)
T PF10214_consen   81 PIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSS-DTGGFPHADVAFNPWDQR  159 (765)
T ss_pred             CeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechh-hcCCCccceEEeccCccc
Confidence            77788887   2    234666668888888882211      100     1111122111 112345779999998888


Q ss_pred             EEEEEecCCeEEEEecCCc----e-EeEEecccc----------CCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          237 MLAIGSYSQTSAIYREDNM----E-LLYVLHGQE----------GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       237 ~l~~~~~dg~i~i~d~~~~----~-~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      .||+....|...||++...    . .+.....+.          .....+.|.++-..|+.++  -..+.++|+++...
T Consensus       160 q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~--r~~l~~~d~~~~~~  236 (765)
T PF10214_consen  160 QFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN--RSKLMLIDFESNWQ  236 (765)
T ss_pred             eEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc--CCceEEEECCCCCc
Confidence            9999999999999999211    1 111111111          2335788988888888776  66789999987654

These proteins are found in fungi.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.91  E-value=3.1  Score=34.35  Aligned_cols=156  Identities=13%  Similarity=0.195  Sum_probs=84.5

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcE--EE-EE-cC---CeEEEEEcCCCCcc
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK--IF-AG-YN---KSVRVFDVHRPGRD  207 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~--l~-~~-~d---~~i~v~d~~~~~~~  207 (304)
                      +|...+++....++-+.+||+. |+.++.+... ..+...-...+.+.  |+.  |+ ++ .+   ..|++|.+......
T Consensus        65 dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~G-r~NNVDvrygf~l~--g~~vDlavas~R~~g~n~l~~f~id~~~g~  140 (381)
T PF02333_consen   65 DPAKSLIIGTDKKGGLYVYDLD-GKELQSLPVG-RPNNVDVRYGFPLN--GKTVDLAVASDRSDGRNSLRLFRIDPDTGE  140 (381)
T ss_dssp             -GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS--EEEEEEEEEEEET--TEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred             CcccceEEEEeCCCCEEEEcCC-CcEEEeecCC-CcceeeeecceecC--CceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence            4566678888888889999996 5555555422 22222233445553  332  34 44 32   57999988642222


Q ss_pred             ceeeeeeeccccccccceeEEEe--ecCC-CcEEEEEecCCeEEEEecC---Cc----eEeEEeccccCCeEEEEECCCC
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAF--SPTH-TGMLAIGSYSQTSAIYRED---NM----ELLYVLHGQEGGVTHVQFSRDG  277 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~--~p~~-~~~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~v~~~~~~~~~  277 (304)
                      +..+.............++.+|+  +|.. ..++++...+|.+..|.+.   .+    +++++|.. .+.+-.|......
T Consensus       141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~  219 (381)
T PF02333_consen  141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDET  219 (381)
T ss_dssp             EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTT
T ss_pred             ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEeccc
Confidence            22211100000111123566666  4433 3566778889988888664   22    46777764 4468888888887


Q ss_pred             cEEEEeeccCCeEEEEecc
Q 022019          278 NYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       278 ~~l~~~~~~d~~i~vwd~~  296 (304)
                      .+|+.+= .+--|.-|+.+
T Consensus       220 g~LYvgE-E~~GIW~y~Ae  237 (381)
T PF02333_consen  220 GRLYVGE-EDVGIWRYDAE  237 (381)
T ss_dssp             TEEEEEE-TTTEEEEEESS
T ss_pred             CCEEEec-CccEEEEEecC
Confidence            8888876 66555555554

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.88  E-value=5.3  Score=36.91  Aligned_cols=73  Identities=10%  Similarity=0.174  Sum_probs=46.4

Q ss_pred             eeEEEeecCCCcEEEEEec----------CCeEEEEecCCceEeEEecc--ccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          225 MSAIAFSPTHTGMLAIGSY----------SQTSAIYREDNMELLYVLHG--QEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       225 v~~~~~~p~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                      +.++.|..+.+.++++|+.          .|.|.+|.......+.....  -++.+.++.-- +|++||.-   ...|++
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I---n~~vrL  852 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI---NQSVRL  852 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec---CcEEEE
Confidence            5566688865778888873          57888887766333333321  23455555432 57766643   568999


Q ss_pred             Eecccceee
Q 022019          293 WDLRKAVQV  301 (304)
Q Consensus       293 wd~~~~~~~  301 (304)
                      |++.+.+.+
T Consensus       853 ye~t~~~eL  861 (1096)
T KOG1897|consen  853 YEWTTEREL  861 (1096)
T ss_pred             EEcccccee
Confidence            999887543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.58  E-value=1.7  Score=36.43  Aligned_cols=43  Identities=9%  Similarity=-0.038  Sum_probs=35.6

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS   95 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~   95 (304)
                      ...+......+.+|..+|++++.|+...=|.|.++|+.++...
T Consensus       300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv  342 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV  342 (415)
T ss_pred             EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh
Confidence            3356667777999999999999998888899999999877553

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.40  E-value=4.2  Score=34.13  Aligned_cols=114  Identities=12%  Similarity=0.139  Sum_probs=62.3

Q ss_pred             CeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeE--EeecccccccccceEEEEECCCCcEEEEEcCCeEE
Q 022019          120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVR  197 (304)
Q Consensus       120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~  197 (304)
                      ..+..+.+       .+++.+++++ .+|.+ ++....++...  .+...........+.++.|.+++..+++|..|.+.
T Consensus       281 ~~l~~v~~-------~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~  351 (398)
T PLN00033        281 RRIQNMGW-------RADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILL  351 (398)
T ss_pred             cceeeeeE-------cCCCCEEEEe-CCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEE
Confidence            45556655       5577766655 55654 33434443211  12211110111258899999999999999999777


Q ss_pred             EEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEE
Q 022019          198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY  250 (304)
Q Consensus       198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~  250 (304)
                      ...-  .+..+.....    .......++.+.|.+ +++.++ .+.+|.|.-|
T Consensus       352 ~s~D--~G~tW~~~~~----~~~~~~~ly~v~f~~-~~~g~~-~G~~G~il~~  396 (398)
T PLN00033        352 RSTD--GGKSWKRDKG----ADNIAANLYSVKFFD-DKKGFV-LGNDGVLLRY  396 (398)
T ss_pred             EeCC--CCcceeEccc----cCCCCcceeEEEEcC-CCceEE-EeCCcEEEEe
Confidence            7642  2333322110    122334578999877 444444 5567776554

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=93.21  E-value=5.9  Score=35.85  Aligned_cols=92  Identities=15%  Similarity=0.240  Sum_probs=50.6

Q ss_pred             EEEECCCCcEEEE-EcCC-----eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEe
Q 022019          178 SVAFNPTGTKIFA-GYNK-----SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (304)
Q Consensus       178 ~i~~~~~~~~l~~-~~d~-----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  251 (304)
                      .++|-|+|..+++ +.||     .|.++.-+..     ....+.. ..+....+..++|+- ....+++ ...+.+++|-
T Consensus       251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGL-----rHGef~l-r~~~dEk~~~~~wn~-~s~vlav-~~~n~~~lwt  322 (1243)
T COG5290         251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGL-----RHGEFDL-RVGCDEKAFLENWNL-LSTVLAV-AEGNLLKLWT  322 (1243)
T ss_pred             ccccccCCceeeeeccCCCCCcceEEEEccCCc-----ccCCccc-cCCchhhhhhhhhhH-HHHHHHH-hhcceEEEEE
Confidence            4899999999993 4443     3444443211     0011100 022334466778876 4444444 3456899998


Q ss_pred             cCCceEeEEeccccCCeEEEEECCCC
Q 022019          252 EDNMELLYVLHGQEGGVTHVQFSRDG  277 (304)
Q Consensus       252 ~~~~~~~~~~~~~~~~v~~~~~~~~~  277 (304)
                      ..+..--......-..+.-+.|+|..
T Consensus       323 tkNyhWYLK~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         323 TKNYHWYLKVERQIPGISYVKWHPEE  348 (1243)
T ss_pred             ccceEEEEEEeecCCCcceeeecccc
Confidence            87655332222233456778888854

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.96  E-value=1.2  Score=37.81  Aligned_cols=97  Identities=11%  Similarity=0.056  Sum_probs=53.2

Q ss_pred             CceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccc---cccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC---SLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      -.|..+..++.|..++-+|.+|.+.++=.+.......+...   ...+...-....+.....-.+...+|+|+.+    .
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~----~  179 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSI----L  179 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCcc----C
Confidence            45778889999999999999997766542211110000000   0000000000011111223566778988743    2


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeee
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLR  161 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~  161 (304)
                      ...|..-+.|..|++||+.....+
T Consensus       180 D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  180 DPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             CceEEEEecCcEEEEEecCCcchh
Confidence            346777778999999999765433

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.95  E-value=0.61  Score=41.03  Aligned_cols=67  Identities=12%  Similarity=0.189  Sum_probs=41.8

Q ss_pred             CCcEEEEEecCCeEEEEecCC----ceEeEE--ecc--------------------ccCCeEEEEECC----CCcEEEEe
Q 022019          234 HTGMLAIGSYSQTSAIYREDN----MELLYV--LHG--------------------QEGGVTHVQFSR----DGNYLYTG  283 (304)
Q Consensus       234 ~~~~l~~~~~dg~i~i~d~~~----~~~~~~--~~~--------------------~~~~v~~~~~~~----~~~~l~~~  283 (304)
                      +...++++..||.+.......    +.....  +..                    ..+....++.++    +..+|++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            455778888899888877654    111111  110                    113456666766    77899999


Q ss_pred             eccCCeEEEEecccceee
Q 022019          284 GRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       284 ~~~d~~i~vwd~~~~~~~  301 (304)
                      + .|++|++||+.+++++
T Consensus       237 ~-~D~~LRiW~l~t~~~~  253 (547)
T PF11715_consen  237 S-RDHTLRIWSLETGQCL  253 (547)
T ss_dssp             E-TTSEEEEEETTTTCEE
T ss_pred             e-CCCeEEEEECCCCeEE
Confidence            9 9999999999999874

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.78  E-value=7  Score=35.05  Aligned_cols=50  Identities=12%  Similarity=0.162  Sum_probs=36.8

Q ss_pred             CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCC
Q 022019          148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR  203 (304)
Q Consensus       148 g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~  203 (304)
                      -.|+||+.. |+....+.-...     .+-.+.|+.+..+|++..+|++++|++..
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~-----~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHG-----ELIGMGWSDDEELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCC-----CeeeecccCCceEEEEeccceEEEeecch
Confidence            347788764 554444333222     67799999999999999999999999864

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.65  E-value=5.9  Score=33.82  Aligned_cols=108  Identities=16%  Similarity=0.154  Sum_probs=59.1

Q ss_pred             ceEEEEECCCCcEEEEEc-CCeEEEEEcCCCCccceeeeeeeccc-cccccceeEEEeecCC------CcEEEEEec---
Q 022019          175 AAFSVAFNPTGTKIFAGY-NKSVRVFDVHRPGRDFEKYSTLKGNK-EGQAGIMSAIAFSPTH------TGMLAIGSY---  243 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~------~~~l~~~~~---  243 (304)
                      ..+.|+|.|+|++|++-. .|.|++++......  .....+.... .........|+++|+-      +.++++-+.   
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~--~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEV--KVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCce--eeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            567999999998888876 69999998654211  1111111111 1125568899999853      123333211   


Q ss_pred             ------CCeEEEEecCCc-------eEe-EEecc-ccCCeEEEEECCCCcEEEEee
Q 022019          244 ------SQTSAIYREDNM-------ELL-YVLHG-QEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       244 ------dg~i~i~d~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~  284 (304)
                            ...|.-|.+...       +.+ ..+.. ....-..|.|.|||.+.++.+
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~G  164 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIG  164 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEEC
Confidence                  223444544311       111 11211 112345788999998777666

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=92.37  E-value=1.3  Score=27.96  Aligned_cols=42  Identities=12%  Similarity=0.103  Sum_probs=29.3

Q ss_pred             EeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE
Q 022019          144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG  191 (304)
Q Consensus       144 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  191 (304)
                      +..+|.+.-||..+++....+....      ..+.|++++|+.+++.+
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~L~------fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDGLY------FPNGVALSPDESFVLVA   74 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEEES------SEEEEEE-TTSSEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhCCC------ccCeEEEcCCCCEEEEE
Confidence            3447889999999987655554433      56799999999998866

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.31  E-value=0.42  Score=24.96  Aligned_cols=27  Identities=19%  Similarity=0.224  Sum_probs=21.8

Q ss_pred             CCCcEEEEeeccCCeEEEEecccceee
Q 022019          275 RDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       275 ~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      |++++|+++...++.|.++|..+++.+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~   27 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVI   27 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence            678888887767899999999877543

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.28  E-value=0.86  Score=23.39  Aligned_cols=32  Identities=22%  Similarity=0.357  Sum_probs=20.5

Q ss_pred             ecCCCCceeEEEEcCCCCeEEEec-CC--CeEEEe
Q 022019           56 SSIPNNFLKGIKWSPDGSSFLTSS-ED--KTLRIF   87 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~~~l~s~~-~d--g~v~vw   87 (304)
                      +......-....|+|||++|+-++ .+  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            334455678899999999877554 44  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.25  E-value=5.4  Score=32.51  Aligned_cols=105  Identities=19%  Similarity=0.269  Sum_probs=60.1

Q ss_pred             ceEEEEECCCCcEEEEE-cC------CeEEEEEcCCCCccceeeeeeec--------cccccccceeEEEeecCCCcEEE
Q 022019          175 AAFSVAFNPTGTKIFAG-YN------KSVRVFDVHRPGRDFEKYSTLKG--------NKEGQAGIMSAIAFSPTHTGMLA  239 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~-~d------~~i~v~d~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~p~~~~~l~  239 (304)
                      ...+|++.+++.++++. .+      ..|+.++..  +.....+.....        ........+.+++++| ++..|+
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~  162 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLF  162 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEE
Confidence            34578887788888776 66      677777765  333222211111        1122345689999999 555555


Q ss_pred             EEec-----CC--e-------EEE--EecCC-ceEeEE----ecc-----ccCCeEEEEECCCCcEEEE
Q 022019          240 IGSY-----SQ--T-------SAI--YREDN-MELLYV----LHG-----QEGGVTHVQFSRDGNYLYT  282 (304)
Q Consensus       240 ~~~~-----dg--~-------i~i--~d~~~-~~~~~~----~~~-----~~~~v~~~~~~~~~~~l~~  282 (304)
                      ++.+     |+  .       ++|  ||..+ +.+...    +..     ....++.+.+-+++++|+.
T Consensus       163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             EEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            5543     22  1       444  45544 322222    222     3457899999999987653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.91  E-value=4.8  Score=36.98  Aligned_cols=65  Identities=17%  Similarity=0.171  Sum_probs=42.6

Q ss_pred             cEEEEEecCCeEEEEecCCceEeEEeccccCCe-------------EEEEECC--CCcEEEEeec---------cCCeEE
Q 022019          236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV-------------THVQFSR--DGNYLYTGGR---------KDPYIL  291 (304)
Q Consensus       236 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~---------~d~~i~  291 (304)
                      ..++.++.|+.+.-.|.++++....+.. .+.|             ..+.-.|  .+..++.|+.         .+|.|+
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            3677888999999999999998876642 1111             0111112  1335555641         268999


Q ss_pred             EEecccceee
Q 022019          292 CWDLRKAVQV  301 (304)
Q Consensus       292 vwd~~~~~~~  301 (304)
                      -+|.++|+.+
T Consensus       340 A~Da~TGkl~  349 (764)
T TIGR03074       340 AFDVNTGALV  349 (764)
T ss_pred             EEECCCCcEe
Confidence            9999999865

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=91.89  E-value=5.3  Score=31.65  Aligned_cols=102  Identities=12%  Similarity=0.221  Sum_probs=58.2

Q ss_pred             CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEc-------CCeEEEEEcCCCCccceeeeeeeccc-cc
Q 022019          149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY-------NKSVRVFDVHRPGRDFEKYSTLKGNK-EG  220 (304)
Q Consensus       149 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-------d~~i~v~d~~~~~~~~~~~~~~~~~~-~~  220 (304)
                      .|++||..+.+....-...     ...|+++.|..+.+.+++|.       ...+..||+...     .+..+.... ..
T Consensus        17 ~lC~yd~~~~qW~~~g~~i-----~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~-----~w~~~~~~~s~~   86 (281)
T PF12768_consen   17 GLCLYDTDNSQWSSPGNGI-----SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ-----TWSSLGGGSSNS   86 (281)
T ss_pred             EEEEEECCCCEeecCCCCc-----eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC-----eeeecCCccccc
Confidence            4899998876654332222     23899999987777777541       345778888752     112222111 22


Q ss_pred             cccceeEEEeecCCC-cEEEEEe-cCC--eEEEEecCCceEeEE
Q 022019          221 QAGIMSAIAFSPTHT-GMLAIGS-YSQ--TSAIYREDNMELLYV  260 (304)
Q Consensus       221 ~~~~v~~~~~~p~~~-~~l~~~~-~dg--~i~i~d~~~~~~~~~  260 (304)
                      ..+++..+.+...+. .+.+.|. .+|  .|..||-.....+..
T Consensus        87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~  130 (281)
T PF12768_consen   87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS  130 (281)
T ss_pred             CCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence            346788887754343 3554544 233  477777655544433

>PHA02790 Kelch-like protein; Provisional

Probab=91.77  E-value=8.1  Score=33.50  Aligned_cols=104  Identities=7%  Similarity=0.100  Sum_probs=50.0

Q ss_pred             CccEEEEEeCCC---CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeee
Q 022019          137 TSCVFASTTRDH---PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       137 ~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      +|++.+.|+.++   .+..||.++.+....-..... .  .....+.  -+++..+.|  |.+.+||.++.  .+.....
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~-r--~~~~~~~--~~~~IYv~G--G~~e~ydp~~~--~W~~~~~  432 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP-H--YKSCALV--FGRRLFLVG--RNAEFYCESSN--TWTLIDD  432 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc-c--ccceEEE--ECCEEEEEC--CceEEecCCCC--cEeEcCC
Confidence            677778877553   467888876654332111110 0  0111222  235555555  45678888652  2222221


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecC-----CeEEEEecCCce
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNME  256 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~  256 (304)
                      +    ....... +++..  ++.++++|+.+     ..+..||..+++
T Consensus       433 m----~~~r~~~-~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        433 P----IYPRDNP-ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             C----CCCcccc-EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence            1    1111112 22222  55688888764     346667765543

>PRK10115 protease 2; Provisional

Probab=91.76  E-value=10  Score=34.61  Aligned_cols=111  Identities=14%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             ceeEEEEcCCCCeEEEecC-----CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC
Q 022019           62 FLKGIKWSPDGSSFLTSSE-----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~-----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (304)
                      .+..+.|+|||++|+.+..     .-.|++-|+.++.......                 .. .. ..++|       .+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-----------------~~-~~-~~~~w-------~~  181 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-----------------DN-VE-PSFVW-------AN  181 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-----------------cC-cc-eEEEE-------ee
Confidence            4777899999998886532     2357788887553211100                 00 01 33566       55


Q ss_pred             CccEEEEEeCC------CCEEEEEcCCC--eeeEEeecccccccccceE-EEEECCCCcEEE--EE--cCCeEEEEEcCC
Q 022019          137 TSCVFASTTRD------HPIHLWDATTG--LLRCTYRAYDAVDEITAAF-SVAFNPTGTKIF--AG--YNKSVRVFDVHR  203 (304)
Q Consensus       137 ~~~~l~~~~~d------g~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~--~~--~d~~i~v~d~~~  203 (304)
                      |++.|+.+..+      ..|+.+++.++  +....+.....     ... .+..+.++++++  +.  .++.+.+++...
T Consensus       182 D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~-----~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~  256 (686)
T PRK10115        182 DSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDD-----TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL  256 (686)
T ss_pred             CCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCC-----CEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence            66655555332      35788888877  33444443221     122 334455777666  22  556899999644

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.52  E-value=5.8  Score=31.34  Aligned_cols=146  Identities=15%  Similarity=0.119  Sum_probs=85.0

Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeee
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      .+++...+..+.-+++.|+.+............ .  .--+++..  .|++.+++ -|...-+.|+..+..+..     .
T Consensus        95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~--gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~l-----a  164 (370)
T COG5276          95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-D--GYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQL-----A  164 (370)
T ss_pred             cccEEEEEcCCCceEEEeccCCCCcceeccccC-C--ceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCcee-----e
Confidence            455777777777799999987654433322211 0  12334444  48888866 577788899987644321     1


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce-E--eEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-L--LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                      .........-..++.+   +++...+..|+-+.|.|+.+.. +  +.... ....+.++..+++-.+++...  . -+.+
T Consensus       165 grya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~--e-gvli  237 (370)
T COG5276         165 GRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYD--E-GVLI  237 (370)
T ss_pred             eeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcc--c-ceEE
Confidence            1111112222345554   3366777789999999987654 2  22222 233688888887766665443  3 3556


Q ss_pred             Eecccce
Q 022019          293 WDLRKAV  299 (304)
Q Consensus       293 wd~~~~~  299 (304)
                      -|..+.+
T Consensus       238 vd~s~~s  244 (370)
T COG5276         238 VDVSGPS  244 (370)
T ss_pred             EecCCCC
Confidence            6665544

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.03  E-value=6.3  Score=30.84  Aligned_cols=152  Identities=15%  Similarity=0.171  Sum_probs=88.1

Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~  212 (304)
                      +..|||..-+++...+.|--.|-.+|+....--....     ....|..-|||..-++-....|.-+|-++.+  .   .
T Consensus        68 apapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga-----~Phgiv~gpdg~~Witd~~~aI~R~dpkt~e--v---t  137 (353)
T COG4257          68 APAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGA-----SPHGIVVGPDGSAWITDTGLAIGRLDPKTLE--V---T  137 (353)
T ss_pred             ccCCCCceEEecCccccceecCCCCCceEEEecCCCC-----CCceEEECCCCCeeEecCcceeEEecCcccc--e---E
Confidence            4478888888888888888889888886544333222     4557888999887775433366666664422  1   2


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccc-cCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-EGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                      .+....+..........|.+ .+.+-+++.. |.---.|.. ...+..+... ...-+.|+-.|||..-++.- .++.|-
T Consensus       138 ~f~lp~~~a~~nlet~vfD~-~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyasl-agnaia  213 (353)
T COG4257         138 RFPLPLEHADANLETAVFDP-WGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASL-AGNAIA  213 (353)
T ss_pred             EeecccccCCCcccceeeCC-CccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEec-cccceE
Confidence            22222233345577889999 7777777762 211111111 1123333322 22456777888887666654 555565


Q ss_pred             EEecccc
Q 022019          292 CWDLRKA  298 (304)
Q Consensus       292 vwd~~~~  298 (304)
                      ..|..++
T Consensus       214 ridp~~~  220 (353)
T COG4257         214 RIDPFAG  220 (353)
T ss_pred             EcccccC
Confidence            5555443

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.83  E-value=7.1  Score=31.14  Aligned_cols=137  Identities=13%  Similarity=0.141  Sum_probs=68.8

Q ss_pred             eCCCCEEEEEcCCCeeeEEeecccccc--------------cccceEEEEECC---CCcEEEEE--cCCeEEEEEcC---
Q 022019          145 TRDHPIHLWDATTGLLRCTYRAYDAVD--------------EITAAFSVAFNP---TGTKIFAG--YNKSVRVFDVH---  202 (304)
Q Consensus       145 ~~dg~i~i~d~~~~~~~~~~~~~~~~~--------------~~~~v~~i~~~~---~~~~l~~~--~d~~i~v~d~~---  202 (304)
                      +..+-|.++|+.+++..+.+.......              ....+.+++.+|   +++.|+-+  ....++--...   
T Consensus        85 ~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~  164 (287)
T PF03022_consen   85 SGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLR  164 (287)
T ss_dssp             TTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHC
T ss_pred             CCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhh
Confidence            344579999999887665544322111              112356666655   56666633  33333332221   


Q ss_pred             CCCcccee--eeeeecccccc-ccceeEEEeecCCCcEEEEEecCCeEEEEecCCc------eEeEEeccccCCeEEEEE
Q 022019          203 RPGRDFEK--YSTLKGNKEGQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM------ELLYVLHGQEGGVTHVQF  273 (304)
Q Consensus       203 ~~~~~~~~--~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~~~~  273 (304)
                      ........  ...+.  ..+. ......+++++ .+.++++--..+.|..|+....      +.+..-...-..+.++.+
T Consensus       165 ~~~~~~~~~~~~~v~--~lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i  241 (287)
T PF03022_consen  165 DPSLSDAQALASQVQ--DLGDKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKI  241 (287)
T ss_dssp             STT--HHH-HHHT-E--EEEE---SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE
T ss_pred             Cccccccccccccce--eccccCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeee
Confidence            11100000  00000  0111 12456788899 7888888888999999998751      222211111357899999


Q ss_pred             CC--CCcEEEEee
Q 022019          274 SR--DGNYLYTGG  284 (304)
Q Consensus       274 ~~--~~~~l~~~~  284 (304)
                      .+  +|.+-+.+.
T Consensus       242 ~~~~~g~L~v~sn  254 (287)
T PF03022_consen  242 DPEGDGYLWVLSN  254 (287)
T ss_dssp             -T--TS-EEEEE-
T ss_pred             ccccCceEEEEEC
Confidence            98  776555443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=90.77  E-value=7.2  Score=31.06  Aligned_cols=121  Identities=11%  Similarity=0.095  Sum_probs=67.6

Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcC------CC-eeeEEeecccccccccceEEEEECCCC-------------cEEEE
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDAT------TG-LLRCTYRAYDAVDEITAAFSVAFNPTG-------------TKIFA  190 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~------~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~-------------~~l~~  190 (304)
                      .++++|.+.+-++....+...+||..      .. ..+.+++...........+.+.|+...             .+|.+
T Consensus        27 Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~  106 (336)
T TIGR03118        27 GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFV  106 (336)
T ss_pred             eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEE
Confidence            45668888888888888899999986      11 223333322221223356777777432             24667


Q ss_pred             EcCCeEEEEEcCCCCccc-eeeeeeeccccccccceeEEEeecC--CCcEEEEEecCCeEEEEecC
Q 022019          191 GYNKSVRVFDVHRPGRDF-EKYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYRED  253 (304)
Q Consensus       191 ~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~  253 (304)
                      +.||+|.-|......... .....+...  ........+++.+.  +..++++--.+++|.+||-.
T Consensus       107 tEdGTisaW~p~v~~t~~~~~~~~~d~s--~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~  170 (336)
T TIGR03118       107 TEDGTLSGWAPALGTTRMTRAEIVVDAS--QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS  170 (336)
T ss_pred             eCCceEEeecCcCCcccccccEEEEccC--CCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence            899999999864322100 011111111  11223445665532  33455555668999999864

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.33  E-value=1.7  Score=32.46  Aligned_cols=48  Identities=23%  Similarity=0.353  Sum_probs=38.1

Q ss_pred             cEEEEEecCCeEEEEecC--CceEeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          236 GMLAIGSYSQTSAIYRED--NMELLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       236 ~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      ..|+.+.....|.+|++.  ...++.+|.. -+.|..+.++..|.||+|-=
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEE
Confidence            456555677889999987  4457777875 37899999999999999875

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.02  E-value=2.2  Score=37.58  Aligned_cols=37  Identities=19%  Similarity=0.173  Sum_probs=27.6

Q ss_pred             eeEEEeec---CCCcEEEEEecCCeEEEEecCCceEeEEe
Q 022019          225 MSAIAFSP---THTGMLAIGSYSQTSAIYREDNMELLYVL  261 (304)
Q Consensus       225 v~~~~~~p---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  261 (304)
                      ..++++++   ++..++++.+.|+.+|+||+.+++++.+.
T Consensus       217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            44455544   25568999999999999999999986655

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=89.40  E-value=18  Score=33.59  Aligned_cols=182  Identities=10%  Similarity=0.078  Sum_probs=98.0

Q ss_pred             CCCCceeEEEEc---C----CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE--eecCCeEEEEeec
Q 022019           58 IPNNFLKGIKWS---P----DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV--VTEGESVYDFCWF  128 (304)
Q Consensus        58 ~h~~~V~~i~~s---~----~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~  128 (304)
                      .-..+|..|+|+   .    ..++|++ -....+.|+...-.+......... ..-.......+.  .-.+.+..+++|+
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~-s~i~~~~l~~i~~~~tgg~~~aDv~Fn  154 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRP-SRIDPNPLLTISSSDTGGFPHADVAFN  154 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCc-cccccceeEEechhhcCCCccceEEec
Confidence            456789999998   2    2235554 445567777733221100000000 000000111111  1134567788887


Q ss_pred             CccceeCCCccEEEEEeCCCCEEEEEcCCCee----eEEee--cccc----cccccceEEEEECCCCcEEEEEcCCeEEE
Q 022019          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLL----RCTYR--AYDA----VDEITAAFSVAFNPTGTKIFAGYNKSVRV  198 (304)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~--~~~~----~~~~~~v~~i~~~~~~~~l~~~~d~~i~v  198 (304)
                      |.      +...||+....|...||++.....    .....  ..+.    ......-..+.|.++...|++.....+.+
T Consensus       155 P~------~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~  228 (765)
T PF10214_consen  155 PW------DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLML  228 (765)
T ss_pred             cC------ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEE
Confidence            65      445899999999999999921110    11111  0010    01112334788998888999888899999


Q ss_pred             EEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC
Q 022019          199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (304)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  254 (304)
                      +|++.......    +.  .......|..+.-+|.+..+++.-+. ..|...+...
T Consensus       229 ~d~~~~~~~~~----l~--~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~  277 (765)
T PF10214_consen  229 IDFESNWQTEY----LV--TAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKS  277 (765)
T ss_pred             EECCCCCccch----hc--cCCChhheeeEEecCCccceEEEEec-CeEEEEEccC
Confidence            99986422110    11  12344568888888854444444433 5677777765

These proteins are found in fungi.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=88.97  E-value=3.7  Score=25.82  Aligned_cols=50  Identities=20%  Similarity=0.266  Sum_probs=33.8

Q ss_pred             CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       245 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      +.|..||....+  ....+ -..-+.+.++|++++|+.++...+.|++|+.++
T Consensus        36 ~~Vvyyd~~~~~--~va~g-~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   36 GNVVYYDGKEVK--VVASG-FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             ceEEEEeCCEeE--Eeecc-CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            445556643322  12222 234578999999999998887889999998754

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.85  E-value=4.2  Score=34.12  Aligned_cols=156  Identities=12%  Similarity=0.056  Sum_probs=82.2

Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeEE-eecccccccccceE-EEEECCCCcEEE-EEcCCeEEEE-EcCCCCcc-c
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCT-YRAYDAVDEITAAF-SVAFNPTGTKIF-AGYNKSVRVF-DVHRPGRD-F  208 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~v~-~i~~~~~~~~l~-~~~d~~i~v~-d~~~~~~~-~  208 (304)
                      ..|+|+.+..-+. ..+.++++.+...... +...........|+ .+..-..|..+. ...||.|.-| |.+..+.+ +
T Consensus       228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l  306 (733)
T COG4590         228 LTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHL  306 (733)
T ss_pred             ECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcc
Confidence            4789988877665 6788888876433211 11110000001222 122122344444 4588888766 66553321 1


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCC
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP  288 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~  288 (304)
                      ..+...    .-....+..+.-.. +.+-+++-..+|++.++.....+++. +..--....-+++||.+.+|++-  ..|
T Consensus       307 ~h~R~f----~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~Ll~e--~~g  378 (733)
T COG4590         307 NHIRNF----KLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYLLSE--DQG  378 (733)
T ss_pred             eeeecc----ccCcccceeecccc-ccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchheee--cCC
Confidence            111110    10111222222111 34556667778888877654444332 22223356778999999999876  478


Q ss_pred             eEEEEecccc
Q 022019          289 YILCWDLRKA  298 (304)
Q Consensus       289 ~i~vwd~~~~  298 (304)
                      .++++.+++.
T Consensus       379 ki~~~~l~Nr  388 (733)
T COG4590         379 KIRLAQLENR  388 (733)
T ss_pred             ceEEEEecCC
Confidence            8999998775

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=88.85  E-value=1.6  Score=37.12  Aligned_cols=62  Identities=19%  Similarity=0.224  Sum_probs=48.8

Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCC
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR  203 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~  203 (304)
                      .+.++|+++..|.|++||--.......++..+.     .|..+..+.+|+++++....++.+-|++-
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~-----aIk~idvta~Gk~ilaTCk~yllL~d~~i  633 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD-----AIKHIDVTANGKHILATCKNYLLLTDVPI  633 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCccccc-----ceeeeEeecCCcEEEEeecceEEEEeccc
Confidence            455899999999999999654444444554443     88899999999999988888899988864

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.82  E-value=10  Score=36.42  Aligned_cols=144  Identities=13%  Similarity=0.210  Sum_probs=78.5

Q ss_pred             eCCCCEEEEEcCCCeeeEEeecccccccccceEEEE--------ECCCCcEEE-EEcCCeEEEEEcCCCCccceeeeeee
Q 022019          145 TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA--------FNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       145 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~--------~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      +-|..+.+|+.+++.....+....+     .|..+.        |-|.=+++. .++--.|.++-+......... ..+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~sh-----tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~-~~f~  169 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSH-----TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL-SIFN  169 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhh-----hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc-cccc
Confidence            3578899999998655554443332     333322        222223333 555555666544322111100 0000


Q ss_pred             c--cccccccceeEEEeecCCCcEEEEEecCCeEEE--EecCCc---e-E----------------eEEec-cccCCeEE
Q 022019          216 G--NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAI--YREDNM---E-L----------------LYVLH-GQEGGVTH  270 (304)
Q Consensus       216 ~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i--~d~~~~---~-~----------------~~~~~-~~~~~v~~  270 (304)
                      .  ........|.++.... +|+++++| .||.|+=  |....+   + +                +..+. .+..+|..
T Consensus       170 ~~~~i~~dg~~V~~I~~t~-nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q  247 (1311)
T KOG1900|consen  170 TSFKISVDGVSVNCITYTE-NGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ  247 (1311)
T ss_pred             cceeeecCCceEEEEEecc-CCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence            0  0011234478888555 77666655 4554332  121111   0 0                11223 45679999


Q ss_pred             EEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          271 VQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       271 ~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      +........+++-+ ..|+|.+|++..
T Consensus       248 i~ID~SR~IlY~ls-ek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  248 ITIDNSRNILYVLS-EKGTVSAYDIGG  273 (1311)
T ss_pred             eEeccccceeeeec-cCceEEEEEccC
Confidence            99998888999999 999999999976

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=88.58  E-value=0.06  Score=44.74  Aligned_cols=137  Identities=13%  Similarity=0.193  Sum_probs=82.8

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      |-..-....|-|.+.-++.++.+..+..||-......                   .........+++|       +.++
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~l-------------------e~n~tg~aldm~w-------Dkeg   86 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVIL-------------------ELNPTGKALDMAW-------DKEG   86 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhhhhcceec-------------------ccCCchhHhhhhh-------cccc
Confidence            3333445667787666888888889999986643221                   1111233445555       3344


Q ss_pred             cE-EEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeec
Q 022019          139 CV-FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (304)
Q Consensus       139 ~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~  216 (304)
                      .. ++.+-..+.+.+||+.+... +.+.....  +...  -+.|++....++.+ ..|.+.|++.......        .
T Consensus        87 dvlavlAek~~piylwd~n~eyt-qqLE~gg~--~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~i--------i  153 (615)
T KOG2247|consen   87 DVLAVLAEKTGPIYLWDVNSEYT-QQLESGGT--SSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRI--------I  153 (615)
T ss_pred             chhhhhhhcCCCeeechhhhhhH-HHHhccCc--chHH--HHhhccCCccccccccccceEEEeccchhhh--------h
Confidence            43 44556788999999976432 22222111  1111  27889988888877 8899999998763211        1


Q ss_pred             cccccccceeEEEeecCCC
Q 022019          217 NKEGQAGIMSAIAFSPTHT  235 (304)
Q Consensus       217 ~~~~~~~~v~~~~~~p~~~  235 (304)
                      ....|...++++++.+ .+
T Consensus       154 v~Gkh~RRgtq~av~l-Ed  171 (615)
T KOG2247|consen  154 VMGKHQRRGTQIAVTL-ED  171 (615)
T ss_pred             hhcccccceeEEEecc-cc
Confidence            1133677788999988 44

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=88.57  E-value=16  Score=32.01  Aligned_cols=161  Identities=19%  Similarity=0.280  Sum_probs=90.4

Q ss_pred             ecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCe---eeEEeecccccccccceEEEEECC-CCcEEE-EE
Q 022019          117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNP-TGTKIF-AG  191 (304)
Q Consensus       117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~-~~  191 (304)
                      ..+..|+++.|       -.+.-++++=-+--.+++.|+...+   .+..++.++        .+=-+|| +..+|+ .|
T Consensus       323 a~gE~IysvRF-------~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPG--------fS~YLHP~~e~~LlGiG  387 (521)
T PF09826_consen  323 APGERIYSVRF-------MGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPG--------FSDYLHPYDENHLLGIG  387 (521)
T ss_pred             CCCceEEEEEE-------eCCeEEEEEEeecCceEEEECCCCCCCceeeEEECcc--------chhceeECCCCeEEEEc
Confidence            34567777777       3344566665554568899998744   344444433        2334455 444555 56


Q ss_pred             --cCC----------eEEEEEcCCCCccceeeeeeeccc---cccccceeEEEeecCCCcEEEEEec-------CCeEEE
Q 022019          192 --YNK----------SVRVFDVHRPGRDFEKYSTLKGNK---EGQAGIMSAIAFSPTHTGMLAIGSY-------SQTSAI  249 (304)
Q Consensus       192 --~d~----------~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~-------dg~i~i  249 (304)
                        .+.          .|.+||+.....+...........   ..-...-.++.|++ ...+|+.--.       -..+.+
T Consensus       388 ~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~-~~~ll~~Pv~~~~~~~~~~g~~v  466 (521)
T PF09826_consen  388 KDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDK-EKNLLAFPVSSSYGYFNFQGAYV  466 (521)
T ss_pred             ccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeC-CCCEEEEEEEEccCccccceEEE
Confidence              222          478999988665544333322111   11112245788888 4445544322       134777


Q ss_pred             EecC--Cc-eEeEEeccccC-------CeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          250 YRED--NM-ELLYVLHGQEG-------GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       250 ~d~~--~~-~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      |++.  .+ .....+. |..       .+....+.  +..|++.+  ++.|+++|+++.
T Consensus       467 ~~i~~~~g~~~~g~i~-h~~~~~~~~~~~~R~lyi--~d~lYtvS--~~~i~~~~l~t~  520 (521)
T PF09826_consen  467 FSIDPEDGFTLKGKIT-HPSPDYYYSYQIQRSLYI--GDTLYTVS--DNGIKAYDLNTL  520 (521)
T ss_pred             EEEeCCCCeEEEEEEE-ccCcccccccceeEEEEE--CCEEEEEE--CCEEEEEehHhc
Confidence            7776  22 2344444 433       25666654  56788887  788999999875

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=88.42  E-value=5.2  Score=35.95  Aligned_cols=112  Identities=20%  Similarity=0.346  Sum_probs=64.4

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      ...++++.-+|.|..++.++.||+|++|+...........                  ...+-..+.|         .+.
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~------------------~~~p~~nlv~---------tnh   66 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE------------------EAKPKENLVF---------TNH   66 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh------------------hcCCccceee---------ecc
Confidence            3457788888999999999999999999986432210000                  0011111112         112


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEc
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDV  201 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~  201 (304)
                      -|+++..|+.+.-|. +.|-..+.+.....  ......++..+|..+.++..--|.|.-+|.
T Consensus        67 gl~~~tsdrr~la~~-~dgvvqqqfdyndq--sekefss~~cdptaqnvvgtlcggv~q~dc  125 (1636)
T KOG3616|consen   67 GLVTATSDRRALAWK-EDGVVQQQFDYNDQ--SEKEFSSILCDPTAQNVVGTLCGGVEQFDC  125 (1636)
T ss_pred             ceEEEeccchhheee-ccCcchhhccccch--hhhhccceecCchhhhhhhhhccceeeehH
Confidence            366667777777786 34443344433221  122566788888877776443444555553

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=88.21  E-value=2.6  Score=38.04  Aligned_cols=148  Identities=9%  Similarity=0.068  Sum_probs=83.4

Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeecccc
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  219 (304)
                      .+.+|++++.+.++.-..+........... .....+.++.+++. .+.++.-||++-.|--... .....  .+.....
T Consensus       549 Tic~gtq~ssisissss~~s~ke~~~~~~s-pe~~~v~~l~~ss~-Slgagl~dgt~a~y~rap~-gSwd~--ep~~~~~  623 (925)
T KOG3522|consen  549 TICLGTQTSSISISSSSLDSIKEVTSEPPS-PEHESVKLLLFSSG-SLGAGLIDGTLAVYGRAPS-GSWDG--EPNISIP  623 (925)
T ss_pred             cccccCccceeEEeeccCCcccceeccCCC-Cchhhhhhhhcccc-ccccCccCCccccccCCCC-CCCCC--CCccccc
Confidence            578899999999998663322222211111 22236667776653 2222225555444322111 11100  0111112


Q ss_pred             ccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc---ccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG---QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       220 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      ....++.+.++..+    ++.|+.+|.|.++...+......+..   |...|+++.....|-+++.++ .| .+++++..
T Consensus       624 ~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafas-G~-~~rlfhte  697 (925)
T KOG3522|consen  624 TGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFAS-GD-EERLFHTE  697 (925)
T ss_pred             cCCccccchhhhhc----eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcC-CC-EEEEeccc
Confidence            22345777777662    56688899999999887766555543   455799999998888887776 33 45565655


Q ss_pred             cc
Q 022019          297 KA  298 (304)
Q Consensus       297 ~~  298 (304)
                      +.
T Consensus       698 tl  699 (925)
T KOG3522|consen  698 TL  699 (925)
T ss_pred             cc
Confidence            43

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=88.01  E-value=15  Score=31.05  Aligned_cols=59  Identities=12%  Similarity=0.113  Sum_probs=35.9

Q ss_pred             cEEEEEecCCeEEEEecCCceEeEEeccccCC--eEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGG--VTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       236 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      ..+++++.++.+.||.-.  +++........+  |.-..|..-...|++-+ .+|.|.+-=+.+
T Consensus       301 ~~llV~t~t~~LlVy~d~--~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls-~~G~L~v~YLGT  361 (418)
T PF14727_consen  301 LNLLVGTHTGTLLVYEDT--TLVWSAQLPHVPVALSVANFNGLKGLIVSLS-DEGQLSVSYLGT  361 (418)
T ss_pred             eEEEEEecCCeEEEEeCC--eEEEecCCCCCCEEEEecccCCCCceEEEEc-CCCcEEEEEeCC
Confidence            468899999999999743  333333322222  33333433345677777 899888765554

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.85  E-value=16  Score=31.00  Aligned_cols=111  Identities=7%  Similarity=0.127  Sum_probs=65.7

Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcC
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN  193 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d  193 (304)
                      +.....+++.++.|       |+|.+.+|+--.+.+|.+++....+...... +........|.++.|+.+ .-+|.-.+
T Consensus        61 fdm~d~G~I~SIkF-------SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~-~~ck~k~~~IlGF~W~~s-~e~A~i~~  131 (657)
T KOG2377|consen   61 FDMDDKGEIKSIKF-------SLDNKILAVQRTSKTVDFCNFIPDNSQLEYT-QECKTKNANILGFCWTSS-TEIAFITD  131 (657)
T ss_pred             eeecCCCceeEEEe-------ccCcceEEEEecCceEEEEecCCCchhhHHH-HHhccCcceeEEEEEecC-eeEEEEec
Confidence            44445568999988       8899999999999999999975433222211 111112225888999876 55553344


Q ss_pred             CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEE
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI  240 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  240 (304)
                      ..+-+|......+..+..       +.+...|.=..|+|+..-.|++
T Consensus       132 ~G~e~y~v~pekrslRlV-------ks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  132 QGIEFYQVLPEKRSLRLV-------KSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             CCeEEEEEchhhhhhhhh-------hhcccCccEEEEccccceEeee
Confidence            556777664422222221       3345556677788843333333

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=87.65  E-value=24  Score=32.81  Aligned_cols=78  Identities=14%  Similarity=0.155  Sum_probs=45.7

Q ss_pred             ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCcc--c--------------eeeeeeeccccccccceeEEEeecCCCcEE
Q 022019          175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRD--F--------------EKYSTLKGNKEGQAGIMSAIAFSPTHTGML  238 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~--~--------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  238 (304)
                      .|.++.-+.+|+.+++|..+ +.+|.+.-....  +              ..+.+......-+...|..++... ...+|
T Consensus       183 nV~civs~e~GrIFf~g~~d-~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDq-sRg~l  260 (1263)
T COG5308         183 NVRCIVSEEDGRIFFGGEND-PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQ-SRGLL  260 (1263)
T ss_pred             eeEEEEeccCCcEEEecCCC-CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecc-cccce
Confidence            67888888899999998444 777766421110  0              000000001122345577777776 45577


Q ss_pred             EEEecCCeEEEEecCC
Q 022019          239 AIGSYSQTSAIYREDN  254 (304)
Q Consensus       239 ~~~~~dg~i~i~d~~~  254 (304)
                      .+-+....|+-|.+..
T Consensus       261 y~Lr~kS~Vray~itk  276 (1263)
T COG5308         261 YVLRKKSAVRAYSITK  276 (1263)
T ss_pred             eeecccceeeeEeeec
Confidence            7777777788877643

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=87.64  E-value=15  Score=30.62  Aligned_cols=54  Identities=17%  Similarity=0.042  Sum_probs=27.6

Q ss_pred             EEEEecCCce--EeEEeccccCCeEEEEECCCCcEEEEeeccCC-----eEEEEecccceeee
Q 022019          247 SAIYREDNME--LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP-----YILCWDLRKAVQVV  302 (304)
Q Consensus       247 i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~-----~i~vwd~~~~~~~~  302 (304)
                      +.+||..+.+  .+..+.........+.  -+++.++.||..++     .|..++.+++..++
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~--~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~  374 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQGLAYGVSVS--WNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV  374 (376)
T ss_pred             hheEEecCCcccccCcCCCCccceEEEE--eCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence            4578877654  2222221111222333  35777777772222     57777777755443

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=87.30  E-value=16  Score=30.42  Aligned_cols=144  Identities=18%  Similarity=0.281  Sum_probs=79.4

Q ss_pred             CCEEEEEcC--CCeeeEEeecccc--cccccceEEEEE--CC-CCcEEE-E-EcCCeEEEEEcCCCCcc---ceeeeeee
Q 022019          148 HPIHLWDAT--TGLLRCTYRAYDA--VDEITAAFSVAF--NP-TGTKIF-A-GYNKSVRVFDVHRPGRD---FEKYSTLK  215 (304)
Q Consensus       148 g~i~i~d~~--~~~~~~~~~~~~~--~~~~~~v~~i~~--~~-~~~~l~-~-~~d~~i~v~d~~~~~~~---~~~~~~~~  215 (304)
                      .+|++|.+.  ++.. ..+.....  ......++.+++  +| +|.+.+ + +.+|.+..|-+...+..   ...++.+.
T Consensus       127 n~l~~f~id~~~g~L-~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~  205 (381)
T PF02333_consen  127 NSLRLFRIDPDTGEL-TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK  205 (381)
T ss_dssp             -EEEEEEEETTTTEE-EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred             CeEEEEEecCCCCcc-eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence            468999775  3332 22211110  011124666665  44 455544 4 48899988888642221   12222221


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC-----ceEeEEecc--ccCCeEEEEEC--CCC-cEEEEeec
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-----MELLYVLHG--QEGGVTHVQFS--RDG-NYLYTGGR  285 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~--~~~~v~~~~~~--~~~-~~l~~~~~  285 (304)
                           -...+..|.... ....|+.|-++--|.-|+.+.     +..+....+  ....|-.+++-  ++| .||++++.
T Consensus       206 -----~~sQ~EGCVVDD-e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ  279 (381)
T PF02333_consen  206 -----VGSQPEGCVVDD-ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ  279 (381)
T ss_dssp             ------SS-EEEEEEET-TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred             -----CCCcceEEEEec-ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC
Confidence                 123578888888 566888899998898888762     223333332  33467777763  344 47777776


Q ss_pred             cCCeEEEEecccc
Q 022019          286 KDPYILCWDLRKA  298 (304)
Q Consensus       286 ~d~~i~vwd~~~~  298 (304)
                      .+++..||+.+..
T Consensus       280 G~~sf~Vy~r~~~  292 (381)
T PF02333_consen  280 GDNSFAVYDREGP  292 (381)
T ss_dssp             GGTEEEEEESSTT
T ss_pred             CCCeEEEEecCCC
Confidence            8899999998753

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=87.14  E-value=14  Score=29.56  Aligned_cols=145  Identities=16%  Similarity=0.177  Sum_probs=75.6

Q ss_pred             CEEEEEcCCCeeeEEeeccccccc-ccceEEEEECCCC-----cEEEEE--cCCeEEEEEcCCCCccceeeeeeec----
Q 022019          149 PIHLWDATTGLLRCTYRAYDAVDE-ITAAFSVAFNPTG-----TKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKG----  216 (304)
Q Consensus       149 ~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~-----~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~----  216 (304)
                      +|.+||+.+++.++++..+..... .+.+..+.++...     .+++.+  ..+.|.|+|+.++.. .+.......    
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s-~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKS-WRVLHNSFSPDPD  113 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEE-EEEETCGCTTS-S
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcE-EEEecCCcceecc
Confidence            578899999998888877654332 4577888887732     355544  567899999987421 111110000    


Q ss_pred             --------cccccccceeEEEeecC--CCcEEEEEecCCeEEEEecC-----Cce---------EeEEecccc-CCeEEE
Q 022019          217 --------NKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYRED-----NME---------LLYVLHGQE-GGVTHV  271 (304)
Q Consensus       217 --------~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~-----~~~---------~~~~~~~~~-~~v~~~  271 (304)
                              ........+..++.+|-  +++.|.-+...+ -++|.+.     +..         .+..+ +.. +....+
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~  191 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGM  191 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEE
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccCCCCceE
Confidence                    00001112444555441  112333332221 1222221     110         11111 222 345678


Q ss_pred             EECCCCcEEEEeeccCCeEEEEeccc
Q 022019          272 QFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       272 ~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      +.+++|...++-- ..+.|..|+..+
T Consensus       192 ~~D~~G~ly~~~~-~~~aI~~w~~~~  216 (287)
T PF03022_consen  192 AIDPNGNLYFTDV-EQNAIGCWDPDG  216 (287)
T ss_dssp             EEETTTEEEEEEC-CCTEEEEEETTT
T ss_pred             EECCCCcEEEecC-CCCeEEEEeCCC
Confidence            8899998887777 899999999987

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=86.90  E-value=28  Score=32.90  Aligned_cols=124  Identities=17%  Similarity=0.249  Sum_probs=65.7

Q ss_pred             CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcE--EEEE--c----------CCeEEEEEcCCCCccceeeeee
Q 022019          149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK--IFAG--Y----------NKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       149 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~--l~~~--~----------d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      .|++.|..+++....+..... .....+..+.|+.....  ++++  .          +|.++.|++-..+..++.+.. 
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~n-e~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~-  931 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQN-EAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHK-  931 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCC-cchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeec-
Confidence            378888887777666655443 22235667777764433  3333  1          345777777655443322211 


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec--cccCCeEEEEECCCCcEEEEee
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                          ..-.+++  .+.+|..+ ++++| ....+++||+...+++....  .-...|+.+.+.  +..|+.|.
T Consensus       932 ----T~~~~~v--~Ai~~f~~-~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD  993 (1205)
T KOG1898|consen  932 ----TEIPGPV--GAICPFQG-RVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGD  993 (1205)
T ss_pred             ----cCCCccc--eEEeccCC-EEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEee
Confidence                1122333  45567444 44433 44789999998766544332  113345555552  44455554

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=86.64  E-value=19  Score=30.64  Aligned_cols=30  Identities=30%  Similarity=0.442  Sum_probs=25.1

Q ss_pred             CeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       267 ~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      .|.++...+..+.|++.. .+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~-~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLT-SDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEE-SSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEe-CCCcEEEEEEeC
Confidence            489999998889999999 999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PLN02153 epithiospecifier protein

Probab=86.04  E-value=18  Score=29.73  Aligned_cols=25  Identities=12%  Similarity=0.137  Sum_probs=16.1

Q ss_pred             CccEEEEEeCC-----CCEEEEEcCCCeee
Q 022019          137 TSCVFASTTRD-----HPIHLWDATTGLLR  161 (304)
Q Consensus       137 ~~~~l~~~~~d-----g~i~i~d~~~~~~~  161 (304)
                      ++++++.|+.+     ..+.+||+.+.+..
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~  114 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWT  114 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEE
Confidence            45566676643     35788998876543

>smart00564 PQQ beta-propeller repeat

Probab=86.02  E-value=2.4  Score=20.60  Aligned_cols=25  Identities=20%  Similarity=0.236  Sum_probs=20.4

Q ss_pred             EEEEEecCCeEEEEecCCceEeEEe
Q 022019          237 MLAIGSYSQTSAIYREDNMELLYVL  261 (304)
Q Consensus       237 ~l~~~~~dg~i~i~d~~~~~~~~~~  261 (304)
                      .+++++.+|.+..+|.++++.+..+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5777888999999999888876543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.00  E-value=33  Score=32.90  Aligned_cols=30  Identities=10%  Similarity=0.350  Sum_probs=25.7

Q ss_pred             CceeEEEEcCCCCeEEEecCCCeEEEeeCC
Q 022019           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLP   90 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~   90 (304)
                      .....++|+|.-.++|.+..+|.|.++-..
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEeccc
Confidence            345678999999999999999999999654

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=85.85  E-value=34  Score=32.91  Aligned_cols=103  Identities=12%  Similarity=0.104  Sum_probs=52.7

Q ss_pred             CccEEEEEeCCCCEEEEEcC-CCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeee
Q 022019          137 TSCVFASTTRDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      +|. |+++ ..-.|.+|++. ....+.. .....     +++-....--.++|+.| --..|.+.-.........   .+
T Consensus      1107 ~G~-l~~~-~GqKI~v~~l~r~~~ligV-aFiD~-----~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rls---L~ 1175 (1366)
T KOG1896|consen 1107 RGH-LLSS-QGQKIIVRKLDRDSELIGV-AFIDL-----PLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLS---LL 1175 (1366)
T ss_pred             ccE-EEEc-cCcEEEEEEeccCCcceee-EEecc-----ceeEEehhhhhhheehhhhhhceEEEEEccCceEEE---Ee
Confidence            444 4444 34469999994 4433322 21211     33333333345666655 556676666654222111   11


Q ss_pred             eccccccccceeEEEeecCCCc-EEEEEecCCeEEEEec
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSAIYRE  252 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~i~i~d~  252 (304)
                      ..  ....-.+.++.|--+++. .++++..++.|++|-.
T Consensus      1176 sr--d~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1176 SR--DFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred             ec--CCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence            11  112223677777665544 5667777899988743

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=85.35  E-value=7.3  Score=24.69  Aligned_cols=42  Identities=17%  Similarity=0.121  Sum_probs=28.4

Q ss_pred             ecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          242 SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       242 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      ..+|.+.-||..+++....+.+- ..-+.+++++|+.+|+.+=
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEE
T ss_pred             CCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEe
Confidence            34678999999988765555542 2458999999999877663

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=84.73  E-value=18  Score=28.74  Aligned_cols=78  Identities=23%  Similarity=0.390  Sum_probs=48.3

Q ss_pred             CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEe------cCCeEEEEecCCceEeEEecc----
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS------YSQTSAIYREDNMELLYVLHG----  263 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~----  263 (304)
                      ..|.+||...        ..+.....+-.+.|+++.|.. +..+++.|.      ....+..||..+.. ...+.+    
T Consensus        16 ~~lC~yd~~~--------~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~   85 (281)
T PF12768_consen   16 PGLCLYDTDN--------SQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSN   85 (281)
T ss_pred             CEEEEEECCC--------CEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccc
Confidence            3588999876        222222244567899999986 666777775      34568889987654 223333    


Q ss_pred             -ccCCeEEEEEC-CCCcEEE
Q 022019          264 -QEGGVTHVQFS-RDGNYLY  281 (304)
Q Consensus       264 -~~~~v~~~~~~-~~~~~l~  281 (304)
                       -.++|..+.+. .|+..+.
T Consensus        86 ~ipgpv~a~~~~~~d~~~~~  105 (281)
T PF12768_consen   86 SIPGPVTALTFISNDGSNFW  105 (281)
T ss_pred             cCCCcEEEEEeeccCCceEE
Confidence             23678887773 2343344

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=84.45  E-value=17  Score=28.17  Aligned_cols=140  Identities=16%  Similarity=0.164  Sum_probs=0.0

Q ss_pred             EEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcC----CeEEEEEcCCCCccceeeeeeeccccccccceeE
Q 022019          152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN----KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA  227 (304)
Q Consensus       152 i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~  227 (304)
                      +||+.+++....-.....     .+.+-.+-++|+.+.+|.+    ..+++|+................  -....+..+
T Consensus        50 ~yD~~tn~~rpl~v~td~-----FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~--m~~~RWYpT  122 (243)
T PF07250_consen   50 EYDPNTNTFRPLTVQTDT-----FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND--MQSGRWYPT  122 (243)
T ss_pred             EEecCCCcEEeccCCCCC-----cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc--ccCCCcccc


Q ss_pred             EEeecCCCcEEEEEecCCeEEEEec-CCceEeEEe--------ccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          228 IAFSPTHTGMLAIGSYSQTSAIYRE-DNMELLYVL--------HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       228 ~~~~p~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      ...-|++.-+++.|.......+|.. ........+        .....---.+...|+|+.++.+. .+.  .|||..+.
T Consensus       123 ~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an-~~s--~i~d~~~n  199 (243)
T PF07250_consen  123 ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN-RGS--IIYDYKTN  199 (243)
T ss_pred             ceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc-CCc--EEEeCCCC


Q ss_pred             eee
Q 022019          299 VQV  301 (304)
Q Consensus       299 ~~~  301 (304)
                      +.+
T Consensus       200 ~v~  202 (243)
T PF07250_consen  200 TVV  202 (243)
T ss_pred             eEE

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN02193 nitrile-specifier protein

Probab=84.14  E-value=27  Score=30.26  Aligned_cols=63  Identities=8%  Similarity=0.078  Sum_probs=34.3

Q ss_pred             CCcEEEEEecC----CeEEEEecCCceEeEE--e---ccccCCeEEEEECCCCcEEEEeeccC--------------CeE
Q 022019          234 HTGMLAIGSYS----QTSAIYREDNMELLYV--L---HGQEGGVTHVQFSRDGNYLYTGGRKD--------------PYI  290 (304)
Q Consensus       234 ~~~~l~~~~~d----g~i~i~d~~~~~~~~~--~---~~~~~~v~~~~~~~~~~~l~~~~~~d--------------~~i  290 (304)
                      ++.+++.++.+    ..+.+||+.+.+-...  .   ........++.+  +++.++.|+ .+              +.+
T Consensus       328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG-~~~~~~~~~~~~~~~~ndv  404 (470)
T PLN02193        328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVIFGG-EIAMDPLAHVGPGQLTDGT  404 (470)
T ss_pred             CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEEECC-ccCCccccccCccceeccE
Confidence            44577777655    4589999987653221  1   111111222333  566777777 42              247


Q ss_pred             EEEecccce
Q 022019          291 LCWDLRKAV  299 (304)
Q Consensus       291 ~vwd~~~~~  299 (304)
                      .+||+.+.+
T Consensus       405 ~~~D~~t~~  413 (470)
T PLN02193        405 FALDTETLQ  413 (470)
T ss_pred             EEEEcCcCE
Confidence            777776653

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=83.64  E-value=23  Score=29.08  Aligned_cols=14  Identities=21%  Similarity=0.351  Sum_probs=9.8

Q ss_pred             CCEEEEEcCCCeee
Q 022019          148 HPIHLWDATTGLLR  161 (304)
Q Consensus       148 g~i~i~d~~~~~~~  161 (304)
                      ..+.+||..+.+..
T Consensus       168 ~~v~~YDp~t~~W~  181 (346)
T TIGR03547       168 KNVLSYDPSTNQWR  181 (346)
T ss_pred             ceEEEEECCCCcee
Confidence            46888998776543

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=83.44  E-value=7.4  Score=24.47  Aligned_cols=28  Identities=21%  Similarity=0.440  Sum_probs=23.6

Q ss_pred             ceEEEEECCCCcEEEE-E-cCCeEEEEEcC
Q 022019          175 AAFSVAFNPTGTKIFA-G-YNKSVRVFDVH  202 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~-~-~d~~i~v~d~~  202 (304)
                      ..++|.++|++++|++ + ..+.|++|...
T Consensus        55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   55 FANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            5568999999999994 4 88999999875

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=83.29  E-value=17  Score=28.29  Aligned_cols=78  Identities=9%  Similarity=-0.011  Sum_probs=47.4

Q ss_pred             CeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEEC-CCCcEEEEEcCCeEEE
Q 022019          120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN-PTGTKIFAGYNKSVRV  198 (304)
Q Consensus       120 ~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~d~~i~v  198 (304)
                      ..|++++-.....+-...-..++.|.++|.|+|.|-..-.............  .-...=.|. -|.+.++++.||.|++
T Consensus       177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv--~i~~~G~~devdyRI~Va~Rdg~iy~  254 (257)
T PF14779_consen  177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV--FISVSGQYDEVDYRIVVACRDGKIYT  254 (257)
T ss_pred             ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce--EEEEEeeeeccceEEEEEeCCCEEEE
Confidence            4566665544322211223579999999999999988777766666554310  011222344 4556666779999886


Q ss_pred             E
Q 022019          199 F  199 (304)
Q Consensus       199 ~  199 (304)
                      .
T Consensus       255 i  255 (257)
T PF14779_consen  255 I  255 (257)
T ss_pred             E
Confidence            4

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=83.11  E-value=40  Score=31.36  Aligned_cols=74  Identities=14%  Similarity=-0.023  Sum_probs=43.4

Q ss_pred             cceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcccee---------eeeeecc--ccccccceeEEEeecCCCcEEEEE
Q 022019          174 TAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK---------YSTLKGN--KEGQAGIMSAIAFSPTHTGMLAIG  241 (304)
Q Consensus       174 ~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~---------~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~  241 (304)
                      ..|.++....-+.+++.. .||+|.++|-.+-......         +..+...  .......+..++||| ....++.-
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~~  338 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQI  338 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEEE
Confidence            356777777777778855 9999999998664211111         0000000  001111344588999 66677777


Q ss_pred             ecCCeEE
Q 022019          242 SYSQTSA  248 (304)
Q Consensus       242 ~~dg~i~  248 (304)
                      ..+|.+.
T Consensus       339 ~~~~~~~  345 (753)
T PF11635_consen  339 DEDGKTK  345 (753)
T ss_pred             ecCCCce
Confidence            7788755

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein

Probab=83.06  E-value=7.4  Score=26.83  Aligned_cols=64  Identities=11%  Similarity=0.087  Sum_probs=48.8

Q ss_pred             EEEEEecCCeEEEEecCCceEeEEeccccCC-eEE-----------EEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGG-VTH-----------VQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       237 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~-----------~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +.+.+..||.|.+++..+++.+..+...++. |..           -....+..+-++-- .||.+.+-|..++..+
T Consensus        43 l~f~d~~~G~v~V~~~~~G~~va~~~~g~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~-~dGrltL~Dp~Tg~~i  118 (135)
T TIGR03054        43 LVFEDRPDGAVAVVETPDGRLVAILEPGQNGFVRVMLRGLARARARAGVAAEPPFRLTRY-DNGRLTLTDPATGWSI  118 (135)
T ss_pred             EEEecCCCCeEEEEECCCCCEEEEecCCCCchhhHhHHHHHHHHHHcCCCCCCCEEEEEE-eCCcEEEEcCCCCcEE
Confidence            5667788999999999999999999644432 221           11345677888888 9999999999998765

In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	304
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-08
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-07
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-06
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-05
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-05
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-05
2h9l_A	329	Wdr5delta23 Length = 329		2e-05
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-05
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-05
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-05
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-05
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-05
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-05
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-05
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-05
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-05
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		7e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		7e-04

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSV 196
           +C   S++ D  + LWD  TG    TY+ +  V   +  +SVAF+P   +I  AG  + +
Sbjct: 88  NCFAISSSWDKTLRLWDLRTG---TTYKRF--VGHQSEVYSVAFSPDNRQILSAGAEREI 142
Query: 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--- 253
           +++++        K+S+    KE  +  +S + +SP       +  ++   A    D   
Sbjct: 143 KLWNILGEC----KFSS--AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL 196
Query: 254 -----NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
                N ++ Y     E  V H+  S +G Y+ TGG KD  +L WD+
Sbjct: 197 KVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGG-KDKKLLIWDI 242

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 107/251 (42%), Gaps = 39/251 (15%)
Query: 63  LKGIKWSPDGSSFLTSSEDKTLRIFSLPEN-------------GISYDVNACSLAKDQDS 109
           ++G+ +SPDG +  ++S+DKT+++++                 G+++  +  ++A   D 
Sbjct: 19  VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 78
Query: 110 YEASLVVTEGESVYDFCWFPHMS-----ASDPTSCVFASTTRDHPIHLWDATTGLLRCTY 164
               L    G+ +       H S     A  P     AS + D  + LW+    LL+   
Sbjct: 79  KTVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 136
Query: 165 RAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223
               +V      + VAF+P G  I  A  +K+V++++     R+ +   TL G+     G
Sbjct: 137 GHSSSV------WGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVWG 185
Query: 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG 283
               +AFSP     +A  S  +T  ++   N +LL  L G    V  V FS DG  + + 
Sbjct: 186 ----VAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS- 238
Query: 284 GRKDPYILCWD 294
              D  +  W+
Sbjct: 239 ASDDKTVKLWN 249

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 99/229 (43%), Gaps = 32/229 (13%)
Query: 75  FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134
            +++S DK++ ++ L ++  +Y V    L       E  ++ ++G+      W       
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW------- 450
Query: 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN 193
                       D  + LWD   G+   + R +  V       SVAF+    +I  A  +
Sbjct: 451 ------------DGELRLWDLAAGV---STRRF--VGHTKDVLSVAFSLDNRQIVSASRD 493
Query: 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP-THTGMLAIGSYSQTSAIYRE 252
           +++++++         KY+  +G  EG    +S + FSP T    +   S+ +T  ++  
Sbjct: 494 RTIKLWNTLGEC----KYTISEGG-EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301
            N +L   L G  G V+ V  S DG+   +GG KD  +L WDL +  ++
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWDLAEGKKL 596

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 93/234 (39%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I         +DV          S    L   +G S Y F
Sbjct: 74  VAWSSDSNLLVSASDDKTLKI---------WDV----------SSGKCLKTLKGHSNYVF 114
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG+   T  A+   D ++A   V FN  G
Sbjct: 115 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS--DPVSA---VHFNRDG 164
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 165 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 216
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            T  ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ 270

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 179 VAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM 237
           +A+NP GT + + G ++ +R++     G + + +       EG    +  +A+SP     
Sbjct: 22  LAWNPAGTLLASCGGDRRIRIW-----GTEGDSWICKSVLSEGHQRTVRKVAWSPC-GNY 75
Query: 238 LAIGSYSQTSAIYR--EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
           LA  S+  T+ I++  +D+ E +  L G E  V  V ++  GN L T  R D  +  W++
Sbjct: 76  LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR-DKSVWVWEV 134

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I+ +                   S    L   +G S Y F
Sbjct: 67  VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 107
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG    T  A+   D ++A   V FN  G
Sbjct: 108 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 157
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 158 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 209
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            T  ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 210 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 263

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I+ +                   S    L   +G S Y F
Sbjct: 77  VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 117
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG    T  A+   D ++A   V FN  G
Sbjct: 118 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 167
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 168 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 219
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            T  ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 220 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I+ +                   S    L   +G S Y F
Sbjct: 88  VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 128
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG    T  A+   D ++A   V FN  G
Sbjct: 129 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 178
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 179 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 230
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            T  ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 231 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 284

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I+ +                   S    L   +G S Y F
Sbjct: 71  VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 111
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG    T  A+   D ++A   V FN  G
Sbjct: 112 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 161
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 162 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 213
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            T  ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 214 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I+ +                   S    L   +G S Y F
Sbjct: 71  VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 111
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG    T  A+   D ++A   V FN  G
Sbjct: 112 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 161
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 162 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 213
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            T  ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 214 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I         +DV          S    L   +G S Y F
Sbjct: 77  VAWSSDSNLLVSASDDKTLKI---------WDV----------SSGKCLKTLKGHSNYVF 117
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG    T  A+   D ++A   V FN  G
Sbjct: 118 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 167
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 168 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 219
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            T  ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 220 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I+ +                   S    L   +G S Y F
Sbjct: 76  VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 116
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG    T  A+   D ++A   V FN  G
Sbjct: 117 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 166
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 167 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 218
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            T  ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 219 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 272

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I+ +                   S    L   +G S Y F
Sbjct: 93  VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 133
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG    T  A+   D ++A   V FN  G
Sbjct: 134 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 183
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 184 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 235
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            T  ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 236 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 289

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I+ +                   S    L   +G S Y F
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 114
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG    T  A+   D ++A   V FN  G
Sbjct: 115 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 164
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 165 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 216
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            T  ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I+ +                   S    L   +G S Y F
Sbjct: 72  VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 112
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG    T  A+   D ++A   V FN  G
Sbjct: 113 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 162
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 163 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 214
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            T  ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 215 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 268

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I+ +                   S    L   +G S Y F
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 114
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG    T  A+   D ++A   V FN  G
Sbjct: 115 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 164
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 165 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 216
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            T  ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I         +DV          S    L   +G S Y F
Sbjct: 74  VAWSSDSNLLVSASDDKTLKI---------WDV----------SSGKCLKTLKGHSNYVF 114
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG    T  A+   D ++A   V FN  G
Sbjct: 115 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 164
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 165 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 216
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            T  ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I+ +                   S    L   +G S Y F
Sbjct: 70  VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 110
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG    T  A+   D ++A   V FN  G
Sbjct: 111 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 160
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 161 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 212
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            T  ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 213 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 266

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I         +DV          S    L   +G S Y F
Sbjct: 77  VAWSSDSNLLVSASDDKTLKI---------WDV----------SSGKCLKTLKGHSNYVF 117
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG    T  A+   D ++A   V FN  G
Sbjct: 118 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 167
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 168 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 219
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            T  ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 220 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I+ +                   S    L   +G S Y F
Sbjct: 95  VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 135
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG    T  A+   D ++A   V FN  G
Sbjct: 136 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 185
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 186 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 237
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            T  ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 238 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 291

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 40/234 (17%)
Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS D +  +++S+DKTL+I+ +                   S    L   +G S Y F
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 114
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
           C        +P S +  S + D  + +WD  TG+   T  A+   D ++A   V FN  G
Sbjct: 115 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS--DPVSA---VHFNRDG 164
Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           + I  + Y+   R++D             LK   +     +S + FSP    +LA  +  
Sbjct: 165 SLIVSSSYDGLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLD 216
Query: 245 QTSAIYREDNMELL--YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
               ++     + L  Y  H  E       FS  G      G +D  +  W+L+
Sbjct: 217 NDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ 270

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDN-------MELLYVLHGQEGGVTHVQFSRDG 277
           + ++A+ P HT +LA GS+  T +I+ ++        M+LL ++ G E  V  V +S DG
Sbjct: 61  IRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG 119
Query: 278 NYLYTGGRKDPYILCWD 294
            YL T  R D  +  W+
Sbjct: 120 YYLATCSR-DKSVWIWE 135

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 109/265 (41%), Gaps = 57/265 (21%)
Query: 52  QFRTSSIPNN--FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109
              TSS P++  +++ + +SPDG    T +ED+ +RI+ +    I               
Sbjct: 113 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--------------- 157
Query: 110 YEASLVVTEG--ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY 167
               +++ +G  + +Y   +FP             S + D  + +WD  TG    T    
Sbjct: 158 ----VMILQGHEQDIYSLDYFPSGDK-------LVSGSGDRTVRIWDLRTGQCSLTLSIE 206
Query: 168 DAVDEITAAFSVAFNP-TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIM 225
           D V       +VA +P  G  I AG  +++VRV+D    G   E+  +   +  G    +
Sbjct: 207 DGV------TTVAVSPGDGKYIAAGSLDRAVRVWD-SETGFLVERLDSENESGTGHKDSV 259
Query: 226 SAIAFSPTHTGMLAIGSYSQTSAIYREDNM--------------ELLYVLHGQEGGVTHV 271
            ++ F+     +++ GS  ++  ++   N               E+ Y+  G +  V  V
Sbjct: 260 YSVVFTRDGQSVVS-GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI--GHKDFVLSV 316
Query: 272 QFSRDGNYLYTGGRKDPYILCWDLR 296
             +++  Y+ +G  KD  +L WD +
Sbjct: 317 ATTQNDEYILSGS-KDRGVLFWDKK 340

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 34/226 (15%)
Query: 75  FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134
            L++S DKT+ ++ L  +  +Y +   +L          ++ ++G+      W       
Sbjct: 31  ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW------- 83
Query: 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN 193
                       D  + LWD TTG    T R +  V       SVAF+    +I +G  +
Sbjct: 84  ------------DGTLRLWDLTTG---TTTRRF--VGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYRE 252
           K++++++         KY+      E  +  +S + FSP  +  + +   + +   ++  
Sbjct: 127 KTIKLWNT----LGVCKYTV---QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298
            N +L     G  G +  V  S DG+   +GG KD   + WDL + 
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLNEG 224

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 34/226 (15%)
Query: 75  FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134
            L++S DKT+ ++ L  +  +Y +   +L          ++ ++G+      W       
Sbjct: 54  ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW------- 106
Query: 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN 193
                       D  + LWD TTG    T R +  V       SVAF+    +I +G  +
Sbjct: 107 ------------DGTLRLWDLTTG---TTTRRF--VGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYRE 252
           K++++++         KY+      E  +  +S + FSP  +  + +   + +   ++  
Sbjct: 150 KTIKLWNT----LGVCKYTV---QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 253 DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA 298
            N +L     G  G +  V  S DG+   +GG KD   + WDL + 
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLNEG 247

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 11/172 (6%)
Query: 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIF 189
           ++ S+PT  V+  T     + +WD +    +      D ++      S    P G T I 
Sbjct: 57  VTISNPTRHVY--TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIV 114
Query: 190 AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAI 249
            G   ++ ++D+  P         +K      A    A+A SP      +  S     A+
Sbjct: 115 GGEASTLSIWDLAAP------TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI-AV 167
Query: 250 YREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301
           +   N  L+    G   G + +  S DG  L+TGG  D  +  WDLR+  Q+
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL-DNTVRSWDLREGRQL 218

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	304
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	5e-21
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	8e-10
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	8e-09
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	6e-20
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	2e-12
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	1e-19
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	2e-15
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	8e-14
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	2e-10
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	4e-08
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	2e-04
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	4e-19
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	6e-18
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	1e-07
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	2e-06
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	5e-19
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	2e-12
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	7e-12
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	2e-09
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	6e-19
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	5e-14
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	2e-09
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	2e-09
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	5e-09
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-19
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-18
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-18
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-18
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-18
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-17
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-16
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	8e-16
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-15
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	4e-18
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	3e-17
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	5e-18
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-16
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	6e-16
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-15
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-15
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-14
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-14
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-13
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	8e-11
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-07
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-06
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	3e-17
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	4e-17
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	7e-17
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	3e-06
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	4e-17
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	1e-14
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	4e-12
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	2e-16
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	6e-15
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	2e-14
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	4e-10
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	1e-06
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-16
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-13
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-11
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-11
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	4e-11
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-10
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	7e-10
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-08
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-07
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	5e-05
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	3e-16
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	5e-16
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	1e-14
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	8e-09
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	2e-04
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	4e-16
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	7e-15
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	7e-15
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	9e-08
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	9e-07
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	5e-16
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	7e-15
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	3e-14
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	3e-13
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	3e-07
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	8e-16
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	3e-14
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	6e-13
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-12
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-11
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	2e-04
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	1e-15
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	2e-13
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	2e-09
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	2e-06
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	2e-15
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	3e-10
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	2e-05
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	3e-05
3ow8_A	321	WD repeat-containing protein 61; structural genomi	3e-15
3ow8_A	321	WD repeat-containing protein 61; structural genomi	1e-14
3ow8_A	321	WD repeat-containing protein 61; structural genomi	7e-14
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	5e-15
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	1e-13
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	7e-13
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	8e-13
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	2e-11
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	2e-10
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	7e-15
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	3e-13
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-10
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-07
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	3e-07
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-05
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	8e-15
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	1e-13
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	3e-12
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	4e-09
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	6e-06
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-14
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	6e-14
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	7e-10
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	2e-08
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	3e-07
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	4e-04
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	1e-14
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	5e-12
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	1e-11
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	6e-06
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	1e-14
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	5e-14
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	4e-12
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	5e-12
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	4e-10
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	7e-10
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	2e-14
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	6e-12
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	2e-05
3jrp_A	379	Fusion protein of protein transport protein SEC13	2e-14
3jrp_A	379	Fusion protein of protein transport protein SEC13	2e-08
3jrp_A	379	Fusion protein of protein transport protein SEC13	5e-07
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	3e-14
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	3e-11
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	7e-11
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	1e-07
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	3e-07
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	3e-07
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	3e-14
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	2e-12
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	2e-10
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	3e-08
2pm7_B	297	Protein transport protein SEC13, protein transport	6e-14
2pm7_B	297	Protein transport protein SEC13, protein transport	2e-06
2pm7_B	297	Protein transport protein SEC13, protein transport	1e-05
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	8e-14
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	7e-12
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	1e-07
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	1e-06
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	3e-05
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	8e-14
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	2e-11
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	9e-11
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	2e-04
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	1e-13
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	1e-13
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	2e-11
3jro_A	753	Fusion protein of protein transport protein SEC13	1e-13
3jro_A	753	Fusion protein of protein transport protein SEC13	2e-05
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	1e-13
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	6e-09
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	6e-04
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	2e-13
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	4e-06
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	6e-06
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	2e-13
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-13
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-12
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	9e-08
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	2e-13
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	4e-12
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	4e-12
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	5e-07
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	2e-13
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	3e-13
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	2e-11
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	7e-09
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	8e-08
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	3e-13
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	3e-12
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	2e-09
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	3e-09
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	4e-13
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	2e-12
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	7e-10
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	1e-07
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	5e-13
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	2e-12
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	1e-06
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	5e-04
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	1e-11
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	1e-09
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	5e-07
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	3e-11
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	3e-10
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	8e-08
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	6e-07
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	5e-11
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	8e-07
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	2e-10
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	3e-09
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	4e-09
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	5e-10
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	7e-09
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	6e-08
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	4e-07
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	3e-06
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	5e-10
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	6e-10
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	2e-05
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	1e-04
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	8e-09
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	5e-07
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	3e-06
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	2e-08
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	6e-07
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	5e-04

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 91.3 bits (227), Expect = 5e-21
 Identities = 51/240 (21%), Positives = 81/240 (33%), Gaps = 39/240 (16%)

Query: 66  IKWSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESV 122
           I W P   + + S SED T+ ++ +P+ G+   +               ++  EG  + V
Sbjct: 87  IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP------------VITLEGHTKRV 134

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
               W P          V  S   D+ I +WD  TG    T       D I    SV ++
Sbjct: 135 GIVAWHPT------AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY---SVDWS 185

Query: 183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA-IAFSPTHTGMLAI 240
             G  I     +K VRV +     R     +          G       F      +L  
Sbjct: 186 RDGALICTSCRDKRVRVIEP----RKGTVVAEKDR---PHEGTRPVHAVFVSEGK-ILTT 237

Query: 241 G---SYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
           G      +  A++   ++E    L       GV    F  D N +Y  G+ D  I  +++
Sbjct: 238 GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEI 297

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 58.2 bits (141), Expect = 8e-10
 Identities = 32/224 (14%), Positives = 65/224 (29%), Gaps = 55/224 (24%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + WS DG+   TS  DK +R+          +                     G  V + 
Sbjct: 182 VDWSRDGALICTSCRDKRVRV---------IEPRK------------------GTVVAEK 214

Query: 126 CWFPHMSASDPTSCVFA----------STTRDHPIHLWDATTGLLRCTYRAYDAVDEITA 175
                   + P   VF           S   +  + LWD        + +  D    +  
Sbjct: 215 --DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV-- 270

Query: 176 AFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233
                F+P    ++     + S+R F++      F  Y ++  +KE Q G    + + P 
Sbjct: 271 -LLPFFDPDTNIVYLCGKGDSSIRYFEIT-SEAPFLHYLSMFSSKESQRG----MGYMPK 324

Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYV---LHGQEGGVTHVQFS 274
                   +  + +  Y+    +   +   +  +        + 
Sbjct: 325 R---GLEVNKCEIARFYKLHERKCEPIAMTVPRKSDLFQEDLYP 365

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 55.1 bits (133), Expect = 8e-09
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 13/133 (9%)

Query: 178 SVAFNPTGTKI--FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235
             A NP    +   A    +  V  + + GR  +    + G+    A ++  IA+ P + 
Sbjct: 39  FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHT---APVLD-IAWCPHND 94

Query: 236 GMLAIGSYSQTSAIYR-------EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP 288
            ++A GS   T  ++            E +  L G    V  V +      +      D 
Sbjct: 95  NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154

Query: 289 YILCWDLRKAVQV 301
            IL WD+     V
Sbjct: 155 VILVWDVGTGAAV 167

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 88.3 bits (218), Expect = 6e-20
 Identities = 44/296 (14%), Positives = 84/296 (28%), Gaps = 68/296 (22%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPEN-------GISYDVNACSLAKDQDS-YEASLVVT 117
           ++++  G    T  +   + IF   +           Y+V +   + + +  Y  SL + 
Sbjct: 34  VEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIE 93

Query: 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCT-------------- 163
           E   +    W P        +  F  +T D  I LW  +    R                
Sbjct: 94  E--KINKIRWLP-----QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDP 146

Query: 164 ----------YRAYDAVDEITAA-----------FSVAFNPTGTKIFAGYNKSVRVFDVH 202
                     +R  D + E +              S++ N       +  +  + ++ + 
Sbjct: 147 TTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLE 206

Query: 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY------------ 250
              R F        N E    +++A  F P         S   T  +             
Sbjct: 207 ITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS 266

Query: 251 ----REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV 302
                 ++             ++ V+FS  G Y+ T  R    +  WDL    + V
Sbjct: 267 KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT--RDYLSVKVWDLNMENRPV 320

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 66.3 bits (161), Expect = 2e-12
 Identities = 38/261 (14%), Positives = 85/261 (32%), Gaps = 39/261 (14%)

Query: 60  NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG 119
              +  I  + D  ++L S++D  + ++ L     S+++     A  ++  E        
Sbjct: 177 TYHINSISINSDYETYL-SADDLRINLWHLEITDRSFNIVDIKPANMEELTE-------- 227

Query: 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWD--ATTGLLRCTYRAYDAVDEITAAF 177
             +    + P+          F  ++    I L D  A+    R +    +  D    +F
Sbjct: 228 -VITAAEFHPNSCN------TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSF 280

Query: 178 ---------SVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI---- 224
                     V F+ +G  +      SV+V+D++   R  E Y   +  +     +    
Sbjct: 281 FSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340

Query: 225 ----MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYL 280
                    ++ + + ++  GSY+    ++  +    +  L             +     
Sbjct: 341 CIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVC 398

Query: 281 YTGGRKDPYIL--CWDLRKAV 299
            +G RK   I     D  K +
Sbjct: 399 ASGKRKKDEISVDSLDFNKKI 419

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 87.3 bits (217), Expect = 1e-19
 Identities = 41/247 (16%), Positives = 81/247 (32%), Gaps = 52/247 (21%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVY 123
           +K++ +G    + S+D +  ++    NG                    L   +G   +++
Sbjct: 38  VKYNKEGDLLFSCSKDSSASVWYS-LNG------------------ERLGTLDGHTGTIW 78

Query: 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP 183
                      D  +    + + D+ I LWD + G    T+++   V        V F+P
Sbjct: 79  SIDV-------DCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPV------KRVEFSP 125

Query: 184 TGTKI------FAGYNKSVRVFDVHRP-------GRDFEKYSTLKGNKEGQAGIMSAIAF 230
            G               S+ ++++ R            E    +  + EG      A  +
Sbjct: 126 CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH-EGLDAATVA-GW 183

Query: 231 SPTHTGMLAIGSYSQTSAIY-REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289
           S      +  G      + Y   +N E +  +   E  ++ +QFS D  Y  T   +D  
Sbjct: 184 STKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS-RDTN 241

Query: 290 ILCWDLR 296
               D+ 
Sbjct: 242 SFLVDVS 248

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 34/257 (13%), Positives = 70/257 (27%), Gaps = 60/257 (23%)

Query: 68  WSPDGSSFLTSSED-----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV 122
           +SP G+ FL   ++      ++ I         Y++   S   +        +       
Sbjct: 123 FSPCGNYFLAILDNVMKNPGSINI---------YEIERDSATHELTKVSEEPIHK----- 168

Query: 123 YDFCWFPHMSASDPTSCVF-------ASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEIT 174
                  H      T   +        +  +D  I  +D +       +   ++    I+
Sbjct: 169 ----IITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE--KSIS 222

Query: 175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP- 232
               + F+P  T       + +  + DV       +         E    + +A   +P 
Sbjct: 223 ---DMQFSPDLTYFITSSRDTNSFLVDV----STLQVLKKY----ETDCPLNTA-VITPL 270

Query: 233 ------------THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYL 280
                             +       +  Y +   E +  + G  G +  V  S  G   
Sbjct: 271 KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSY 330

Query: 281 YTGGRKDPYILCWDLRK 297
            +GG  D +I      K
Sbjct: 331 ASGGE-DGFIRLHHFEK 346

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 69.9 bits (172), Expect = 8e-14
 Identities = 30/227 (13%), Positives = 70/227 (30%), Gaps = 36/227 (15%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISY-------DVNACSLAKDQDSYEASLVVTE 118
           I         +T S D +++++ +  NG           V          S   +  +  
Sbjct: 80  IDVDCFTKYCVTGSADYSIKLWDV-SNGQCVATWKSPVPVKRVEF-----SPCGNYFLAI 133

Query: 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS 178
            +         ++  +  +  ++    RD   H     +         ++ +D  T    
Sbjct: 134 LD---------NVMKNPGSINIY-EIERDSATHELTKVSEEPIHKIITHEGLDAAT---V 180

Query: 179 VAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM 237
             ++  G  I AG  +  +  +DV       E   ++  ++      +S + FSP  T  
Sbjct: 181 AGWSTKGKYIIAGHKDGKISKYDV-SNNY--EYVDSIDLHE----KSISDMQFSPDLT-Y 232

Query: 238 LAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284
               S    S +     +++L      +  +     +    ++  GG
Sbjct: 233 FITSSRDTNSFLVDVSTLQVLKKYET-DCPLNTAVITPLKEFIILGG 278

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 20/161 (12%)

Query: 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFD 200
                    +L+   + +       ++    +T    V +N  G  +F    + S  V+ 
Sbjct: 6   HHHHHSSGENLYFQGSHMKAIKLTGHE--RPLT---QVKYNKEGDLLFSCSKDSSASVWY 60

Query: 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV 260
                 + E+  TL G+     G + +I            GS   +  ++   N + +  
Sbjct: 61  SL----NGERLGTLDGHT----GTIWSIDVDCFTK-YCVTGSADYSIKLWDVSNGQCVAT 111

Query: 261 LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC----WDLRK 297
                  V  V+FS  GNY                 +++ +
Sbjct: 112 WKSP-VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER 151

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 17/146 (11%), Positives = 41/146 (28%), Gaps = 33/146 (22%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGI-------SYDVNACSLAKDQDSYEASLVVTE 118
           +++SPD + F+TSS D    +  +               +N   +   ++      ++  
Sbjct: 224 MQFSPDLTYFITSSRDTNSFLVDV-STLQVLKKYETDCPLNTAVITPLKE-----FIILG 277

Query: 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA-YDAVDEITAAF 177
           G                      ++         +           +  +  +       
Sbjct: 278 GGQ------------EAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPL------N 319

Query: 178 SVAFNPTGTKIF-AGYNKSVRVFDVH 202
           +VA +P GT     G +  +R+    
Sbjct: 320 TVAISPQGTSYASGGEDGFIRLHHFE 345

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 228 IAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287
           +  S           +S    +Y + +      L G E  +T V+++++G+ L++   KD
Sbjct: 1   MGSSH------HHHHHSSGENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCS-KD 53

Query: 288 PYILCWDL 295
                W  
Sbjct: 54  SSASVWYS 61

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 85.9 bits (213), Expect = 4e-19
 Identities = 44/253 (17%), Positives = 92/253 (36%), Gaps = 44/253 (17%)

Query: 65  GIKWSPDGSS-FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY 123
           G+ W+P+ +   L++S+D T+ +         +D+NA          +          V 
Sbjct: 186 GLSWNPNLNGYLLSASDDHTICL---------WDINATPKEHRVIDAKNIFTGHTA-VVE 235

Query: 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA-VDEITAAFSVAFN 182
           D  W         +  +F S   D  + +WD             DA   E+     ++FN
Sbjct: 236 DVAWHLL----HES--LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN---CLSFN 286

Query: 183 PTGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
           P    I A    +K+V ++D+        K  + + +K+    I   + +SP +  +LA 
Sbjct: 287 PYSEFILATGSADKTVALWDLRNLK---LKLHSFESHKDE---IFQ-VQWSPHNETILAS 339

Query: 241 GSY--------------SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286
                             Q++    +   ELL++  G    ++   ++ +  ++     +
Sbjct: 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE 399

Query: 287 DPYILCWDLRKAV 299
           D  +  W + + V
Sbjct: 400 DNIMQVWQMAENV 412

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 82.5 bits (204), Expect = 6e-18
 Identities = 46/246 (18%), Positives = 90/246 (36%), Gaps = 40/246 (16%)

Query: 66  IKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESV 122
            ++ P  +  + T +    + +F         D        +        +   G  +  
Sbjct: 134 ARYMPQNACVIATKTPSSDVLVF---------DYTKHPSKPEPSGECQPDLRLRGHQKEG 184

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-------LRCTYRAYDAVDEITA 175
           Y   W P+++          S + DH I LWD             +  +  + AV E   
Sbjct: 185 YGLSWNPNLNG------YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE--- 235

Query: 176 AFSVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233
              VA++     +F     ++ + ++D  R     +   T+  +    A +   ++F+P 
Sbjct: 236 --DVAWHLLHESLFGSVADDQKLMIWDT-RNNNTSKPSHTVDAH---TAEVNC-LSFNPY 288

Query: 234 HTGMLAIGSYSQTSAIYREDNMEL-LYVLHGQEGGVTHVQFSRDG-NYLYTGGRKDPYIL 291
              +LA GS  +T A++   N++L L+     +  +  VQ+S      L + G  D  + 
Sbjct: 289 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT-DRRLH 347

Query: 292 CWDLRK 297
            WDL K
Sbjct: 348 VWDLSK 353

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 21/137 (15%)

Query: 178 SVAFNPTGTKIFA--GYNKSVRVFDV------HRPGRDFEKYSTLKG-NKEGQAGIMSAI 228
              + P    + A    +  V VFD         P  + +    L+G  KEG       +
Sbjct: 133 RARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEG-----YGL 187

Query: 229 AFSPTHTGMLAIGSYSQTSAIY-------REDNMELLYVLHGQEGGVTHVQFSRDGNYLY 281
           +++P   G L   S   T  ++           ++   +  G    V  V +      L+
Sbjct: 188 SWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF 247

Query: 282 TGGRKDPYILCWDLRKA 298
                D  ++ WD R  
Sbjct: 248 GSVADDQKLMIWDTRNN 264

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 14/99 (14%)

Query: 66  IKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESV 122
           ++WSP   + L +S  D+ L ++ L + G        S    +D     L +  G    +
Sbjct: 327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQ-----STEDAEDGPPELLFIHGGHTAKI 381

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR 161
            DF W P+    +P   +  S + D+ + +W     +  
Sbjct: 382 SDFSWNPN----EPW--IICSVSEDNIMQVWQMAENVYN 414

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 85.8 bits (213), Expect = 5e-19
 Identities = 31/242 (12%), Positives = 73/242 (30%), Gaps = 47/242 (19%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSL----------PENGISYDVNACSLAKDQDSYEASLV 115
           +KW+ DG+  ++   +    ++++           +      +NA + + D         
Sbjct: 155 VKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGD--------- 205

Query: 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITA 175
              G    D  W             F        I ++  T          +     I+ 
Sbjct: 206 ---GSLGVDVEWVDDDK--------FVIPGPKGAIFVYQITEKTPTGKLIGHH--GPIS- 251

Query: 176 AFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH 234
              + FN T   +  A  + ++R++            +   G+ +    I+S  ++    
Sbjct: 252 --VLEFNDTNKLLLSASDDGTLRIWHGGNG----NSQNCFYGHSQ---SIVS-ASWVG-- 299

Query: 235 TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294
              +   S   +  ++      LL +       +   + S+DG         D  +  +D
Sbjct: 300 DDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM-DGQVNVYD 358

Query: 295 LR 296
           L+
Sbjct: 359 LK 360

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 34/245 (13%), Positives = 67/245 (27%), Gaps = 36/245 (14%)

Query: 68  WSPDGSSFLTS-SEDKTLRIFSLPE-NGISYDVNACSLAKDQDSYEASLVVTEG--ESVY 123
           W+P   S L    ++   R+  + E +         ++  +     A    +      V 
Sbjct: 53  WNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVT 112

Query: 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFN 182
              W    S          +   +  + LW+ T  LL      +   +       SV +N
Sbjct: 113 CLAW----S---HDGNSIVTGVENGELRLWNKTGALLN-VLNFHRAPI------VSVKWN 158

Query: 183 PTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP--------- 232
             GT I          +++V             +  + G + I +    S          
Sbjct: 159 KDGTHIISMDVENVTILWNVI----SGTVMQHFELKETGGSSINA-ENHSGDGSLGVDVE 213

Query: 233 -THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL 291
                   I        +Y+         L G  G ++ ++F+     L +    D  + 
Sbjct: 214 WVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD-DGTLR 272

Query: 292 CWDLR 296
            W   
Sbjct: 273 IWHGG 277

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 64.6 bits (158), Expect = 7e-12
 Identities = 36/224 (16%), Positives = 66/224 (29%), Gaps = 52/224 (23%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDF 125
           WS DG+S +T  E+  LR+++  + G                  A L V       +   
Sbjct: 116 WSHDGNSIVTGVENGELRLWN--KTG------------------ALLNVLNFHRAPIVSV 155

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE--ITAAFS----- 178
            W       D       S   ++   LW+  +G +   +   +           S     
Sbjct: 156 KWNK-----D--GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSL 208

Query: 179 ---VAFNPTGTKIFAGYNKSVRVFDVH--RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233
              V +      +  G   ++ V+ +    P         L G+      I   + F+ T
Sbjct: 209 GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTG------KLIGH---HGPISV-LEFNDT 258

Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG 277
           +  +L   S   T  I+   N       +G    +    +  D 
Sbjct: 259 NK-LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD 301

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 23/171 (13%), Positives = 54/171 (31%), Gaps = 25/171 (14%)

Query: 142 ASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIFA--GYNKSVR 197
                 + I   D   G ++        D +       S  +NP    I A    N   R
Sbjct: 18  TQEDDTNSIDSSDDLDGFVKILKEIVKLDNI------VSSTWNPLDESILAYGEKNSVAR 71

Query: 198 VFDV------------HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ 245
           +  +                 +      L  +       ++ +A+S      +  G  + 
Sbjct: 72  LARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN-SIVTGVENG 130

Query: 246 TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
              ++ +    LL VL+     +  V++++DG ++ +    +   + W++ 
Sbjct: 131 ELRLWNKTG-ALLNVLNFHRAPIVSVKWNKDGTHIISMDV-ENVTILWNVI 179

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 84.5 bits (210), Expect = 6e-19
 Identities = 52/235 (22%), Positives = 88/235 (37%), Gaps = 42/235 (17%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDF 125
           W+P G+   +   D+ +RI         +           DS+    V++EG   +V   
Sbjct: 24  WNPAGTLLASCGGDRRIRI---------WGTEG-------DSWICKSVLSEGHQRTVRKV 67

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNP 183
            W P            AS + D    +W        C  T   ++  +E+    SVA+ P
Sbjct: 68  AWSPC-------GNYLASASFDATTCIWKKNQDDFECVTTLEGHE--NEVK---SVAWAP 115

Query: 184 TGTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS 242
           +G  +     +KSV V++V     ++E  S L  +      +   + + P+   +LA  S
Sbjct: 116 SGNLLATCSRDKSVWVWEVD-EEDEYECVSVLNSH---TQDVKH-VVWHPSQE-LLASAS 169

Query: 243 YSQTSAIYRED--NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
           Y  T  +YRE+  +      L G E  V  + F   G  L +    D  +  W  
Sbjct: 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD-DRTVRIWRQ 223

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 70.3 bits (173), Expect = 5e-14
 Identities = 47/260 (18%), Positives = 87/260 (33%), Gaps = 63/260 (24%)

Query: 64  KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EG--E 120
           K + W+P G+   T S DK++ +         ++V         +  E   V       +
Sbjct: 109 KSVAWAPSGNLLATCSRDKSVWV---------WEV--------DEEDEYECVSVLNSHTQ 151

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAY-DAVDEITAAF 177
            V    W P          + AS + D  + L+        C  T   +   V      +
Sbjct: 152 DVKHVVWHPSQE-------LLASASYDDTVKLYREEEDDWVCCATLEGHESTV------W 198

Query: 178 SVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYS-----------TLKGNKEGQAGIM 225
           S+AF+P+G ++     +++VR++  + PG +                TL G       I 
Sbjct: 199 SLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR--TIY 256

Query: 226 SAIAFSPTHTGMLAIGSYSQTSAIYREDN---------MELLYVLHGQEGGVTHVQFS-R 275
             IA+    TG LA         +++ED              ++       V  V ++ +
Sbjct: 257 D-IAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK 314

Query: 276 DGNYLYTGGRKDPYILCWDL 295
           +   L +    D  +  W  
Sbjct: 315 EPGLLASCSD-DGEVAFWKY 333

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 26/155 (16%), Positives = 43/155 (27%), Gaps = 18/155 (11%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127
           + P G    + S+D+T+RI+     G    V              +L      ++YD  W
Sbjct: 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS-WKCICTLSGFHSRTIYDIAW 260

Query: 128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITA----AFSVAFNP 183
                     +   A+   D  I ++                     A       VA+NP
Sbjct: 261 ----C---QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP 313

Query: 184 TGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKG 216
               + A    +  V  +   RP    E       
Sbjct: 314 KEPGLLASCSDDGEVAFWKYQRP----EGLHHHHH 344

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 34/222 (15%), Positives = 75/222 (33%), Gaps = 53/222 (23%)

Query: 64  KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EG--E 120
           K + W P      ++S D T++++                   ++  +     T EG   
Sbjct: 154 KHVVWHPSQELLASASYDDTVKLY------------------REEEDDWVCCATLEGHES 195

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT---------------TGLLRCTYR 165
           +V+   +       DP+    AS + D  + +W                  +    CT  
Sbjct: 196 TVWSLAF-------DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS 248

Query: 166 AY--DAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNK-EGQ 221
            +    +      + +A+      +  A  + ++RVF         +   +L  +  +  
Sbjct: 249 GFHSRTI------YDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH 302

Query: 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG 263
           +  ++ +A++P   G+LA  S     A ++    E L+  H 
Sbjct: 303 SQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHHHH 344

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 55.3 bits (134), Expect = 5e-09
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 9/111 (8%)

Query: 178 SVAFNPTGTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG 236
            +A+NP GT +   G ++ +R++     G  +   S L    EG    +  +A+SP    
Sbjct: 21  FLAWNPAGTLLASCGGDRRIRIWGTE--GDSWICKSVLS---EGHQRTVRKVAWSPCGN- 74

Query: 237 MLAIGSYSQTSAI--YREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR 285
            LA  S+  T+ I    +D+ E +  L G E  V  V ++  GN L T  R
Sbjct: 75  YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR 125

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 86.0 bits (213), Expect = 7e-19
 Identities = 24/229 (10%), Positives = 55/229 (24%), Gaps = 45/229 (19%)

Query: 68   WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127
            +  + +  L     + L++ +  + G                    +       V   C 
Sbjct: 930  FQENETMVLAVDNIRGLQLIAG-KTG-------------------QIDYLPEAQVSCCCL 969

Query: 128  FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK 187
             PH           A    D  I + +     +  +   +     +     + F   G  
Sbjct: 970  SPH-------LEYVAFGDEDGAIKIIELPNNRVFSSGVGHK--KAVR---HIQFTADGKT 1017

Query: 188  IF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT 246
            +  +  +  ++V++          Y  L    +     +            L   S+  T
Sbjct: 1018 LISSSEDSVIQVWNWQT-----GDYVFL----QAHQETVKDFRLLQ--DSRLLSWSFDGT 1066

Query: 247  SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
              ++      +       +G V     S D     +    D     W  
Sbjct: 1067 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSA-DKTAKIWSF 1114

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 85.7 bits (212), Expect = 1e-18
 Identities = 42/239 (17%), Positives = 82/239 (34%), Gaps = 53/239 (22%)

Query: 68   WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127
            ++ DG + ++SSED  ++++                  +  + +   +    E+V DF  
Sbjct: 1011 FTADGKTLISSSEDSVIQVW------------------NWQTGDYVFLQAHQETVKDFRL 1052

Query: 128  FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK 187
                   D       S + D  + +W+  TG +   +  +     +    S A +   TK
Sbjct: 1053 LQ-----DSR---LLSWSFDGTVKVWNVITGRIERDFTCHQ--GTVL---SCAISSDATK 1099

Query: 188  IF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT 246
                  +K+ +++              LKG+     G +   AFS     +LA G  +  
Sbjct: 1100 FSSTSADKTAKIWSF----DLLSPLHELKGHN----GCVRCSAFSLDGI-LLATGDDNGE 1150

Query: 247  ---------SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
                       ++    + +        G VT V FS D   L + G    Y+  W++ 
Sbjct: 1151 IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG---YLKWWNVA 1206

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 85.7 bits (212), Expect = 1e-18
 Identities = 51/265 (19%), Positives = 81/265 (30%), Gaps = 47/265 (17%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSL-------PENGISYDVNACSLAKD-QDSYEAS---- 113
             +S D S   T S DK ++I+           +  S  VN C           A+    
Sbjct: 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 722

Query: 114 -LV----VTEGESVYDFCWFPHMSASDP-TSCVF-------ASTTRDHPIHLWDATTGLL 160
             +    + + E       F H   ++    C F       AS + D  + LWD  +   
Sbjct: 723 FFLKLWDLNQKECRNTM--FGH---TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777

Query: 161 RCTYRAYDAVDEITAAF--------SVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212
           R +                        +++  G KI       V +FD+H  G       
Sbjct: 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG---LLAE 834

Query: 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ 272
              G+       +    FSP    +  I        ++  D+   +    G    V  V 
Sbjct: 835 IHTGHH----STIQYCDFSPYDH-LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 889

Query: 273 FSRDGNYLYTGGRKDPYILCWDLRK 297
           FS DG+   T    D  I  W+ +K
Sbjct: 890 FSPDGSSFLTASD-DQTIRVWETKK 913

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 84.5 bits (209), Expect = 3e-18
 Identities = 32/232 (13%), Positives = 64/232 (27%), Gaps = 49/232 (21%)

Query: 68   WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDF 125
            +SP     + +     + ++++ ++                     +    G    V+  
Sbjct: 848  FSPYDHLAVIALSQYCVELWNI-DSR------------------LKVADCRGHLSWVHGV 888

Query: 126  CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
             +        P    F + + D  I +W+                        V F    
Sbjct: 889  MF-------SPDGSSFLTASDDQTIRVWETKKVCKNSA-IVLKQE------IDVVFQENE 934

Query: 186  TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
            T + A    + +++              T +         +S    SP     +A G   
Sbjct: 935  TMVLAVDNIRGLQLIAG----------KTGQ-IDYLPEAQVSCCCLSPHLE-YVAFGDED 982

Query: 245  QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
                I    N  +     G +  V H+QF+ DG  L +    D  I  W+ +
Sbjct: 983  GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE-DSVIQVWNWQ 1033

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 83.7 bits (207), Expect = 4e-18
 Identities = 45/263 (17%), Positives = 91/263 (34%), Gaps = 27/263 (10%)

Query: 45  RTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRI-FSLPENGISYDVNACSL 103
             Y      +  ++  NF + +  S +G           +++    PE    Y       
Sbjct: 527 VAYRHILDEKDCAVCENFQEFL--SLNGHLLGRQPFPNIVQLGLCEPETSEVYRQAKLQA 584

Query: 104 AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV--------FASTTRDHPIHLWDA 155
            ++ D+    L     +++ +         +D              AS   D  + ++ A
Sbjct: 585 KQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA 644

Query: 156 TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTL 214
            TG      +A++  DE+      AF+   + I     +K V+++D    G+    Y   
Sbjct: 645 ETGEKLLDIKAHE--DEVL---CCAFSSDDSYIATCSADKKVKIWDSAT-GKLVHTY--- 695

Query: 215 KGNKEGQAGIMSAIAFSPT-HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF 273
               +  +  ++   F+   +  +LA GS      ++  +  E    + G    V H +F
Sbjct: 696 ----DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF 751

Query: 274 SRDGNYLYTGGRKDPYILCWDLR 296
           S D   L +    D  +  WD+R
Sbjct: 752 SPDDELLASCSA-DGTLRLWDVR 773

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 82.6 bits (204), Expect = 1e-17
 Identities = 42/230 (18%), Positives = 71/230 (30%), Gaps = 44/230 (19%)

Query: 68   WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDF 125
             SP         ED  ++I  L  N                          G  ++V   
Sbjct: 969  LSPHLEYVAFGDEDGAIKIIEL-PNN------------------RVFSSGVGHKKAVRHI 1009

Query: 126  CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
             +               S++ D  I +W+  TG         + V               
Sbjct: 1010 QF-------TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETV------KDFRLLQDS 1056

Query: 186  TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ 245
              +   ++ +V+V++V               +   Q  ++S  A S   T   +  S  +
Sbjct: 1057 RLLSWSFDGTVKVWNV----ITGRIERDFTCH---QGTVLS-CAISSDAT-KFSSTSADK 1107

Query: 246  TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
            T+ I+  D +  L+ L G  G V    FS DG  L TG   +  I  W++
Sbjct: 1108 TAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD-NGEIRIWNV 1156

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 77.9 bits (192), Expect = 4e-16
 Identities = 36/233 (15%), Positives = 76/233 (32%), Gaps = 47/233 (20%)

Query: 65   GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124
            G+ +SPDGSSFLT+S+D+T+R+         ++                      +   D
Sbjct: 887  GVMFSPDGSSFLTASDDQTIRV---------WETKKVCKNSAI----------VLKQEID 927

Query: 125  FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT 184
              +  +         +  +      + L    TG  +  Y     V           +P 
Sbjct: 928  VVFQEN-------ETMVLAVDNIRGLQLIAGKTG--QIDYLPEAQV------SCCCLSPH 972

Query: 185  GTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
               + F   + ++++ ++    R F    +  G+K      +  I F+      L   S 
Sbjct: 973  LEYVAFGDEDGAIKIIELPN-NRVFS---SGVGHK----KAVRHIQFTADGK-TLISSSE 1023

Query: 244  SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
                 ++     + +  L   +  V   +  +D   L +    D  +  W++ 
Sbjct: 1024 DSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLL-SWSF-DGTVKVWNVI 1073

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 76.8 bits (189), Expect = 8e-16
 Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 38/233 (16%)

Query: 66   IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
             +   D    L+ S D T++++++   G                 E      +G +V   
Sbjct: 1050 FRLLQDSR-LLSWSFDGTVKVWNV-ITG---------------RIERDFTCHQG-TVLSC 1091

Query: 126  CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
                        +  F+ST+ D    +W           + ++    +      AF+  G
Sbjct: 1092 AI-------SSDATKFSSTSADKTAKIWSFDLLSPLHELKGHN--GCVR---CSAFSLDG 1139

Query: 186  TKIF-AGYNKSVRVFDVH--RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS 242
              +     N  +R+++V   +        S  +G      G ++ + FSP     L   S
Sbjct: 1140 ILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT-ATHGGWVTDVCFSPDSK-TLV--S 1195

Query: 243  YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
                   +     +     +     +  +  S D     T       +    +
Sbjct: 1196 AGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDN-LGILYILQV 1247

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 74.9 bits (184), Expect = 4e-15
 Identities = 32/232 (13%), Positives = 69/232 (29%), Gaps = 49/232 (21%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDF 125
           WS DG   + ++++K L                     D  +      +  G   ++   
Sbjct: 806 WSADGDKIIVAAKNKVLLF-------------------DIHTSGLLAEIHTGHHSTIQYC 846

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
            + P+         +       + + LW+  + L     R + +         V F+P G
Sbjct: 847 DFSPY-------DHLAVIALSQYCVELWNIDSRLKVADCRGHLS-----WVHGVMFSPDG 894

Query: 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           +    A  ++++RV++             +  N          + F    T M+      
Sbjct: 895 SSFLTASDDQTIRVWET----------KKVCKNSAIVLKQEIDVVFQENET-MVLAVDNI 943

Query: 245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
           +   +      +   + +  E  V+    S    Y+  G   D  I   +L 
Sbjct: 944 RGLQLI---AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE-DGAIKIIELP 991

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 82.8 bits (205), Expect = 4e-18
 Identities = 42/252 (16%), Positives = 86/252 (34%), Gaps = 45/252 (17%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127
            +  G+     S D +L ++          + A    K   S +            D  W
Sbjct: 31  GTVSGTVDANFSTDSSLELW---------SLLAADSEKPIASLQVD------SKFNDLDW 75

Query: 128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-----DAVDEITAAFSVAFN 182
             +       + + A    +  + L+            A       +V       +V FN
Sbjct: 76  SHN-------NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV------KTVKFN 122

Query: 183 PTGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLK-GNKEGQAGIMSAIAFSPTHTGMLA 239
                + A  G N  + ++D+++       Y+ L  G        + ++A++ +   + A
Sbjct: 123 AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFA 182

Query: 240 IGSYSQTSAIY----REDNMELLYV--LHGQEGGVTHVQFSRDGNYLY---TGGRKDPYI 290
               S  ++I+    +++ + L Y     G +  ++ V++    +      TG   DP I
Sbjct: 183 SAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242

Query: 291 LCWDLRKAVQVV 302
           L WDLR A   +
Sbjct: 243 LIWDLRNANTPL 254

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 80.5 bits (199), Expect = 3e-17
 Identities = 35/240 (14%), Positives = 77/240 (32%), Gaps = 29/240 (12%)

Query: 64  KGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE-GES 121
           K +K++    +   +   +  + I         +D+N C+ +    +           + 
Sbjct: 117 KTVKFNAKQDNVLASGGNNGEIFI---------WDMNKCTESPSNYTPLTPGQSMSSVDE 167

Query: 122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAA-FSVA 180
           V    W   ++       VFAS    +   +WD                  I      V 
Sbjct: 168 VISLAWNQSLAH------VFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVE 221

Query: 181 FNPTGTKIFAG-----YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235
           ++P  +   A       + S+ ++D+ R      + +  +G+   Q GI+S + +     
Sbjct: 222 WHPKNSTRVATATGSDNDPSILIWDL-RNANTPLQ-TLNQGH---QKGILS-LDWCHQDE 275

Query: 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
            +L       T  ++  ++ E L     +       +F+ +   L+     D  I    L
Sbjct: 276 HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 83.4 bits (207), Expect = 5e-18
 Identities = 42/237 (17%), Positives = 80/237 (33%), Gaps = 45/237 (18%)

Query: 68  WSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE-GESVYDF 125
           + P     + + S+D T+ IF  P                   ++      E  + V+  
Sbjct: 155 FKPSRPFRIISGSDDNTVAIFEGP------------------PFKFKSTFGEHTKFVHSV 196

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV-----DEITAAFSVA 180
            +      + P   +FAST  D  I L++   G     +             +   F + 
Sbjct: 197 RY------N-PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV---FGLT 246

Query: 181 FNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239
           ++P GTKI  A  +K++++++V             K    G       +    T    L 
Sbjct: 247 WSPDGTKIASASADKTIKIWNV-------ATLKVEKTIPVGTRIEDQQLGIIWTKQ-ALV 298

Query: 240 IGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
             S +        +   +  V +G    +T +  S DG  L++    + +I  WD+ 
Sbjct: 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA-EGHINSWDIS 354

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 77.6 bits (192), Expect = 3e-16
 Identities = 24/232 (10%), Positives = 64/232 (27%), Gaps = 45/232 (19%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDF 125
            S DG +  ++  +  +  +                  D  +  ++ V  +     +   
Sbjct: 332 SSADGKTLFSADAEGHINSW------------------DISTGISNRVFPDVHATMITGI 373

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
                            + + D  + +  A    +  +    + +        +A +  G
Sbjct: 374 KTTS-----KGD---LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS--QPLGLAVSADG 423

Query: 186 TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ 245
               A   K + ++   +       Y++            S +A S      +A+G    
Sbjct: 424 DIAVAACYKHIAIYSHGKLTEVPISYNS------------SCVALSNDKQ-FVAVGGQDS 470

Query: 246 TSAIYR-EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
              +Y+                 +T V FS +G +L    +    ++ + + 
Sbjct: 471 KVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-SRKVIPYSVA 521

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 77.2 bits (191), Expect = 6e-16
 Identities = 36/238 (15%), Positives = 75/238 (31%), Gaps = 43/238 (18%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127
           WSPDG+   ++S DKT++I+         +V    +       E ++ V           
Sbjct: 247 WSPDGTKIASASADKTIKIW---------NVATLKV-------EKTIPVGTRIEDQQLGI 290

Query: 128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK 187
                    T     S + +  I+  +   G +      ++    IT   +++ +  G  
Sbjct: 291 ----I---WTKQALVSISANGFINFVNPELGSIDQVRYGHN--KAIT---ALSSSADGKT 338

Query: 188 IF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT 246
           +F A     +  +D+           + +   +  A +++ I  +    G L   S+   
Sbjct: 339 LFSADAEGHINSWDI-------STGISNRVFPDVHATMITGIKTTS--KGDLFTVSWDDH 389

Query: 247 SAI---YREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301
             +             V +        +  S DG+       K   I  +   K  +V
Sbjct: 390 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH--IAIYSHGKLTEV 445

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 75.7 bits (187), Expect = 2e-15
 Identities = 40/253 (15%), Positives = 87/253 (34%), Gaps = 37/253 (14%)

Query: 65  GIKWSPDGSSFLTSSEDKTLRI----------FSLPENGISYDVNACSLAKDQD-----S 109
           GIK +  G    T S D  L++               N +S      +++ D D      
Sbjct: 372 GIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 430

Query: 110 YEASLVVTEGESVYDFCWFPHMSAS---DPTSCVFASTTRDHPIHLWDATTG-LLRCTYR 165
           Y+   + + G+         + S+           A   +D  +H++  +   +      
Sbjct: 431 YKHIAIYSHGKLTEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI 488

Query: 166 AYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224
            +    EIT   SVAF+  G  + A   ++ V  + V     +    ++   +    A +
Sbjct: 489 VHP--AEIT---SVAFSNNGAFLVATDQSRKVIPYSVAN-NFELAHTNSWTFH---TAKV 539

Query: 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDN--MELLYVLHGQEGGVTHVQFSRDGNYLYT 282
              +++SP +   LA GS   +  ++  +      + +         +     +   + +
Sbjct: 540 AC-VSWSPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVS 597

Query: 283 GGRKDPYILCWDL 295
            G+ D  I  W++
Sbjct: 598 AGQ-DSNIKFWNV 609

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 74.9 bits (185), Expect = 3e-15
 Identities = 35/238 (14%), Positives = 71/238 (29%), Gaps = 34/238 (14%)

Query: 60  NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG 119
             F+  ++++PDGS F ++  D T+ +         Y+    +     +      V   G
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVL---------YNGVDGTKTGVFEDDSLKNVAHSG 240

Query: 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSV 179
            SV+   W P     D      AS + D  I +W+  T  +  T      ++       +
Sbjct: 241 -SVFGLTWSP-----D--GTKIASASADKTIKIWNVATLKVEKTIPVGTRIE----DQQL 288

Query: 180 AFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238
               T   +     N  +   +               G+      I + ++ S      L
Sbjct: 289 GIIWTKQALVSISANGFINFVNPELG----SIDQVRYGH---NKAITA-LSSSADGK-TL 339

Query: 239 AIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
                      +         V        +T ++ +  G+ L+T    D ++     
Sbjct: 340 FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSW-DDHLKVVPA 395

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 46/231 (19%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDF 125
                 + ++ S +  +   + PE G                  +   V  G  +++   
Sbjct: 290 IIWTKQALVSISANGFINFVN-PELG------------------SIDQVRYGHNKAITAL 330

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPT 184
                    D       S   +  I+ WD +TG   R     +     IT    +     
Sbjct: 331 SSSA-----DGK--TLFSADAEGHINSWDISTGISNRVFPDVHA--TMIT---GIKTTSK 378

Query: 185 GTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           G      ++  ++V      G D     + K      +     +A S    G +A+ +  
Sbjct: 379 GDLFTVSWDDHLKVVPAGGSGVD-----SSKAVANKLSSQPLGLAVSA--DGDIAVAACY 431

Query: 245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
           +   I    + +L  V        + V  S D  ++  GG+ D  +  + L
Sbjct: 432 KH--IAIYSHGKLTEVPIS--YNSSCVALSNDKQFVAVGGQ-DSKVHVYKL 477

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 71.8 bits (177), Expect = 3e-14
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 142 ASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG---YNKSV 196
           AS      + +WD T    +L+ T   +     +     ++++    +I A      +  
Sbjct: 75  ASGDVHGNVRIWDTTQTTHILKTTIPVFS--GPVK---DISWDSESKRIAAVGEGRERFG 129

Query: 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME 256
            VF             T  GN  GQA  M+++ F P+    +  GS   T AI+     +
Sbjct: 130 HVFLFDT--------GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK 181

Query: 257 LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
                      V  V+++ DG+   + G  D  I+ ++ 
Sbjct: 182 FKSTFGEHTKFVHSVRYNPDGSLFASTGG-DGTIVLYNG 219

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 44/239 (18%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
            K SP G    +      +RI         +D       +     + ++ V  G  V D 
Sbjct: 65  AKTSPSGYYCASGDVHGNVRI---------WDT-----TQTTHILKTTIPVFSG-PVKDI 109

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
            W       +          R+   H++   TG              +    SV F P+ 
Sbjct: 110 SWDS-----ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA--RAMN---SVDFKPSR 159

Query: 186 TKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
                    + +V +F+       F+  ST   +      + S + ++P  + + A    
Sbjct: 160 PFRIISGSDDNTVAIFEG----PPFKFKSTFGEH---TKFVHS-VRYNPDGS-LFASTGG 210

Query: 244 SQTSAIYREDNMELLYVLH-------GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
             T  +Y   +     V            G V  + +S DG  + +    D  I  W++
Sbjct: 211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-DKTIKIWNV 268

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 61.4 bits (150), Expect = 8e-11
 Identities = 29/243 (11%), Positives = 70/243 (28%), Gaps = 55/243 (22%)

Query: 68  WSPDGSSFLTSSE--DKTLRIFSL-------PENGISYDVNACSLAKDQDSYEASLVVTE 118
           W  +        E  ++   +F            G +  +N+                  
Sbjct: 111 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD---------------- 154

Query: 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAF 177
                          S P   +  S   D+ + +++      + T+  +   V       
Sbjct: 155 ------------FKPSRPFRIISGS--DDNTVAIFEGPPFKFKSTFGEHTKFV------H 194

Query: 178 SVAFNPTGTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP--TH 234
           SV +NP G+     G + ++ +++    G     +          +G +  + +SP  T 
Sbjct: 195 SVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 253

Query: 235 TGMLAIGSYSQTSAIYREDNMELLYVL-HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293
              +A  S  +T  I+    +++   +  G       +        L +    + +I   
Sbjct: 254 ---IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA-NGFINFV 309

Query: 294 DLR 296
           +  
Sbjct: 310 NPE 312

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 22/162 (13%), Positives = 51/162 (31%), Gaps = 22/162 (13%)

Query: 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI-FAGYNKSVRV 198
            + + T  + + +   T       Y  +    + T       +P+G        + +VR+
Sbjct: 34  QYCNGTSVYTVPVGSLTDTE---IYTEHS--HQTT---VAKTSPSGYYCASGDVHGNVRI 85

Query: 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG-MLAIGS--YSQTSAIYREDNM 255
           +D  +          LK      +G +  I++        +A       +   ++  D  
Sbjct: 86  WDTTQTTH------ILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFDTG 137

Query: 256 ELLYVLHGQEGGVTHVQFSRDGNY-LYTGGRKDPYILCWDLR 296
                L GQ   +  V F     + + +G   D  +  ++  
Sbjct: 138 TSNGNLTGQARAMNSVDFKPSRPFRIISGSD-DNTVAIFEGP 178

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 17/122 (13%), Positives = 32/122 (26%), Gaps = 12/122 (9%)

Query: 176 AFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235
           A  +   P G KI      SV    V               +    +   +    SP+  
Sbjct: 21  AVVLGNTPAGDKIQYCNGTSVYTVPV----GSLTDTEIYTEH----SHQTTVAKTSPSGY 72

Query: 236 GMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRDGNYLYTGGR-KDPYILC 292
              A G       I+        L   +    G V  + +  +   +   G  ++ +   
Sbjct: 73  -YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV 131

Query: 293 WD 294
           + 
Sbjct: 132 FL 133

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 34/255 (13%), Positives = 72/255 (28%), Gaps = 51/255 (20%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127
                   +T S D T++++                 + +D   A++   +GE+  D CW
Sbjct: 125 IGEGAPEIVTGSRDGTVKVWD---------------PRQKDDPVANMEPVQGENKRD-CW 168

Query: 128 FPHMS-ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT 186
                 A +    V  +   +  I L+D     LR      + V       S+ F+    
Sbjct: 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGV------CSLEFDRKDI 222

Query: 187 KIF----AGYNKSVRVFDVH-RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
            +             VFD+  +         + K +K      +  +   P +  +    
Sbjct: 223 SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK----STVWQVRHLPQNRELFLTA 278

Query: 242 SYSQT-------------------SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT 282
             +                       +    ++ LL  +      ++ + +S D   L  
Sbjct: 279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCV 338

Query: 283 GGRKDPYILCWDLRK 297
               D  +    + K
Sbjct: 339 CSSFDQTVRVLIVTK 353

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 79.7 bits (197), Expect = 4e-17
 Identities = 34/244 (13%), Positives = 81/244 (33%), Gaps = 38/244 (15%)

Query: 66  IKWSPDGSSFLTS----SEDKTLRIFSLPENGISYDVN--ACSLAKDQDSYEASLVVTEG 119
            KW P  + F+T          +++         Y++      L ++ +  +     T G
Sbjct: 24  CKWVPCSAKFVTMGNFARGTGVIQL---------YEIQHGDLKLLREIEKAKPIKCGTFG 74

Query: 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAY-DAVDEITAAF 177
                        A+       A+      +H+W+     +   + + + + ++ I    
Sbjct: 75  -------------ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIG 121

Query: 178 SVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKG-NKEGQAGIMSAIAFSPTHT 235
            +       +I     + +V+V+D  +          ++G NK     +    A++    
Sbjct: 122 GLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER 181

Query: 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG---NYLYTGGRKDPYILC 292
            ++  G  +    ++   NM L +     + GV  ++F R     N L      +     
Sbjct: 182 -VVCAGYDNGDIKLFDLRNMALRWET-NIKNGVCSLEFDRKDISMNKLVATSL-EGKFHV 238

Query: 293 WDLR 296
           +D+R
Sbjct: 239 FDMR 242

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 78.9 bits (195), Expect = 7e-17
 Identities = 37/243 (15%), Positives = 65/243 (26%), Gaps = 44/243 (18%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDF 125
            S       T      L I++L E                   E  +   +G  E +   
Sbjct: 76  TSLQQRYLATGDFGGNLHIWNL-EAP-----------------EMPVYSVKGHKEIINAI 117

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTG----LLRCTYRAYDAVDEITAAFSVAF 181
                +      +    + +RD  + +WD              +  +  D  T AF  A+
Sbjct: 118 DGIGGLGIG-EGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY 176

Query: 182 NPTGTKIFAGY-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP--THTGML 238
           N     + AGY N  +++FD+        +   L+     + G+ S + F         L
Sbjct: 177 NQEERVVCAGYDNGDIKLFDL--------RNMALRWETNIKNGVCS-LEFDRKDISMNKL 227

Query: 239 AIGSYSQT-----SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLY-TGGRKDPYILC 292
              S                           +  V  V+       L+ T G     +  
Sbjct: 228 VATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG-AGGLHL 286

Query: 293 WDL 295
           W  
Sbjct: 287 WKY 289

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 18/132 (13%)

Query: 177 FSVAFNPTGTKI-----FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS 231
           F   + P   K      FA     ++++++       +     +  K       +  A S
Sbjct: 22  FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG----DLKLLREIEKAKPIKCGTFGATS 77

Query: 232 PTHTGMLAIGSYSQTSAIYR-EDNMELLYVLHGQEGGVTHVQ------FSRDGNYLYTGG 284
                 LA G +     I+  E     +Y + G +  +  +              + TG 
Sbjct: 78  LQQR-YLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS 136

Query: 285 RKDPYILCWDLR 296
           R D  +  WD R
Sbjct: 137 R-DGTVKVWDPR 147

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 79.7 bits (197), Expect = 4e-17
 Identities = 31/241 (12%), Positives = 66/241 (27%), Gaps = 42/241 (17%)

Query: 65  GIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY 123
           G+K++  + +    SS      +          D +   +     +            V 
Sbjct: 123 GMKFNQFNTNQLFVSSIRGATTLR---------DFSGSVIQVFAKTDSWDYWYC---CV- 169

Query: 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP 183
           D            +  + A+      + L       +         V          FNP
Sbjct: 170 DVS---------VSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKV------THAEFNP 214

Query: 184 TGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
               + A    + +V+++D+ R  +D   Y     ++      ++A  F+PT +  L   
Sbjct: 215 RCDWLMATSSVDATVKLWDL-RNIKDKNSYIAEMPHE----KPVNAAYFNPTDSTKLLTT 269

Query: 242 SYSQTSAIYREDNMELLYVL------HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
                  +Y   +      +        Q        +    + +  G   D  +L  D 
Sbjct: 270 DQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDK 329

Query: 296 R 296
           R
Sbjct: 330 R 330

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 23/174 (13%), Positives = 49/174 (28%), Gaps = 26/174 (14%)

Query: 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK-IFA 190
            +S   S             +    +  L  T   +D    +T   S+ ++PT    +  
Sbjct: 37  KSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFD--RRVT---SLEWHPTHPTTVAV 91

Query: 191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT--- 246
           G     + ++D     ++   +    G        ++ + F+  +T  L + S       
Sbjct: 92  GSKGGDIILWDYD--VQNKTSFIQGMGPG----DAITGMKFNQFNTNQLFVSSIRGATTL 145

Query: 247 ----SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
                ++ +             +     V  S     L TG      +L   L 
Sbjct: 146 RDFSGSVIQV-----FAKTDSWDYWYCCVDVSVSRQMLATGDS-TGRLLLLGLD 193

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 65.1 bits (159), Expect = 4e-12
 Identities = 39/248 (15%), Positives = 76/248 (30%), Gaps = 56/248 (22%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127
            S       T      L +           ++   + K++              V    +
Sbjct: 171 VSVSRQMLATGDSTGRLLL---------LGLDGHEIFKEKLH---------KAKVTHAEF 212

Query: 128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY----DAVDEITAAFSVAFNP 183
            P          + A+++ D  + LWD      + +Y A       V       +  FNP
Sbjct: 213 NPRCDW------LMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPV------NAAYFNP 260

Query: 184 T-GTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKG--NKEGQAGIMSAIAFSPTHTGMLA 239
           T  TK+        +RV+       D+ K   +    +++ Q        + P +  ++ 
Sbjct: 261 TDSTKLLTTDQRNEIRVYSS----YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYD-LIV 315

Query: 240 IGSYSQTSAIYREDNM---------ELLYVL--HGQEGGVTHVQFSRDGNYLYTGGRKDP 288
            G Y     +  +             L++ L      G ++  +FS  G+ L +G     
Sbjct: 316 AGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM--GF 373

Query: 289 YILCWDLR 296
            IL W+  
Sbjct: 374 NILIWNRE 381

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 78.2 bits (193), Expect = 2e-16
 Identities = 32/251 (12%), Positives = 81/251 (32%), Gaps = 49/251 (19%)

Query: 64  KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE-GESV 122
             + W+P  +  +T S+D+   ++                 +   +++ +LV+     + 
Sbjct: 59  TCVDWAPKSNRIVTCSQDRNAYVYE---------------KRPDGTWKQTLVLLRLNRAA 103

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG----LLRCTYRA-YDAVDEITAAF 177
               W    S   P    FA  +    I +          + +   R     +       
Sbjct: 104 TFVRW----S---PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTI------L 150

Query: 178 SVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS---------A 227
           S+ ++P    + AG  ++   V   +    D +  +++ G++     + +         A
Sbjct: 151 SLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHA 210

Query: 228 IAFSPTHTGMLAIGSYSQTSAIYREDN----MELLYVLHGQEGGVTHVQFSRDGNYLYTG 283
           + FSP+    LA   +  +  I            L  +   +  +  + ++ +   +  G
Sbjct: 211 VGFSPS-GNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAG 269

Query: 284 GRKDPYILCWD 294
               P +L  +
Sbjct: 270 YNYSPILLQGN 280

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 73.2 bits (180), Expect = 6e-15
 Identities = 24/183 (13%), Positives = 60/183 (32%), Gaps = 26/183 (14%)

Query: 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAA 176
            +  Y+  +    +        F +TT  + + L++      +   T+  +D    +T  
Sbjct: 11  PKPSYEHAFNSQRT-------EFVTTTATNQVELYEQDGNGWKHARTFSDHD--KIVT-- 59

Query: 177 FSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235
             V + P   +I     +++  V++  RP   +++   L             + +SP   
Sbjct: 60  -CVDWAPKSNRIVTCSQDRNAYVYEK-RPDGTWKQTLVLLRL---NRAATF-VRWSPNED 113

Query: 236 GMLAIGSYSQTSAIYR----EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL 291
              A+GS ++  ++       D     ++       +  + +  +   L  G   D    
Sbjct: 114 -KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA-DRKAY 171

Query: 292 CWD 294
              
Sbjct: 172 VLS 174

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 37/249 (14%), Positives = 80/249 (32%), Gaps = 56/249 (22%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EG--ESVYD 124
           ++   + F+T++    + ++                  +QD        T     + V  
Sbjct: 19  FNSQRTEFVTTTATNQVELY------------------EQDGNGWKHARTFSDHDKIVTC 60

Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEIT-AAFSVAFNP 183
             W        P S    + ++D   ++++        T++    +  +  AA  V ++P
Sbjct: 61  VDW-------APKSNRIVTCSQDRNAYVYEKRPDG---TWKQTLVLLRLNRAATFVRWSP 110

Query: 184 TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS 242
              K   G   + + V    +    +      +     ++ I+S + + P +  +LA G 
Sbjct: 111 NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL---RSTILS-LDWHPNNV-LLAAGC 165

Query: 243 YSQT----SAIYREDNMEL-------------LYVLHGQEGGVTHVQFSRDGNYLYTGGR 285
             +     SA  R+ + +              +   +   G V  V FS  GN L   G 
Sbjct: 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH 225

Query: 286 KDPYILCWD 294
            D  +    
Sbjct: 226 -DSSVTIAY 233

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 27/192 (14%), Positives = 48/192 (25%), Gaps = 18/192 (9%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127
           W P+         D+   + S     +     A                  G  V+   +
Sbjct: 154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGF 213

Query: 128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPTG 185
                   P+    A    D  + +   +      R       +   +    S+ +    
Sbjct: 214 -------SPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLR---SLLWANES 263

Query: 186 TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ 245
             + AGYN S  +   +  G    +        +      S      T  G    G  S 
Sbjct: 264 AIVAAGYNYSPILLQGNESGWAHTRDL------DAGTSKTSFTHTGNTGEGREEEGPVSF 317

Query: 246 TSAIYREDNMEL 257
           T+      NM+L
Sbjct: 318 TALRSTFRNMDL 329

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 4/72 (5%)

Query: 226 SAIAFSPTHTGMLAIGSYSQTSAIYREDN--MELLYVLHGQEGGVTHVQFSRDGNYLYTG 283
              AF+   T      + +    +Y +D    +        +  VT V ++   N + T 
Sbjct: 15  YEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTC 73

Query: 284 GRKDPYILCWDL 295
            + D     ++ 
Sbjct: 74  SQ-DRNAYVYEK 84

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 32/238 (13%), Positives = 61/238 (25%), Gaps = 32/238 (13%)

Query: 66  IKWSPDGSSFL--TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY 123
           +K+SP   S    +  E   + +         +       +   +    S        + 
Sbjct: 70  VKFSPIKGSQYLCSGDESGKVIV---------WGWTFDKESNSVEVNVKSEFQVLAGPIS 120

Query: 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP 183
           D  W       +          RD+        +G        +     I    +     
Sbjct: 121 DISWDF-----EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS--QRIN---ACHLKQ 170

Query: 184 TGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
           +        G + SV  +    P +      T       Q   +  + FSP     +   
Sbjct: 171 SRPMRSMTVGDDGSVVFYQGP-PFKFSASDRTH----HKQGSFVRDVEFSPDSGEFVITV 225

Query: 242 SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS---RDGNYLYTGGRKDPYILCWDLR 296
              +  + +   + E L  +   +  V    F+    D     T G  D  I  WD+ 
Sbjct: 226 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA-DATIRVWDVT 282

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 44/258 (17%), Positives = 78/258 (30%), Gaps = 41/258 (15%)

Query: 66  IKWSPDGSSFLTSSE--DKTLRIFSL-------PENGISYDVNACSLAKDQD------SY 110
           I W  +G       E  D      S          +G S  +NAC L + +         
Sbjct: 122 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD 181

Query: 111 EASLVVTEGES-VYDFCWFPHMSASDPTSCV---------FASTTRDHPIHLWDATTGLL 160
           + S+V  +G    +      H         V           +   D  I  +D  +G  
Sbjct: 182 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF 241

Query: 161 RCTYRAYDAVDEITA-AFSVAFNPTGTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218
                     + +    F++++     K    G + ++RV+DV       +         
Sbjct: 242 LKYIEDDQ--EPVQGGIFALSWLD-SQKFATVGADATIRVWDV----TTSKCVQKWTL-- 292

Query: 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278
           + Q      +    T  G +   S   T   Y   + E+L  + G   G+T +  +    
Sbjct: 293 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP--- 349

Query: 279 YLYTGGRKDPYILCWDLR 296
            L +G   D  I+ W   
Sbjct: 350 -LISGSY-DGRIMEWSSS 365

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 42/262 (16%), Positives = 80/262 (30%), Gaps = 49/262 (18%)

Query: 37  IRF-DVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGI 94
           + F   P    + F    RT     +F++ +++SPD   F+ T   D+ +          
Sbjct: 185 VVFYQGP---PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC-------- 233

Query: 95  SYDVNACSLAKDQDSYEASLVVTEGE-SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLW 153
            +D           S E    + + +  V    +    + S   S  FA+   D  I +W
Sbjct: 234 -FDG---------KSGEFLKYIEDDQEPVQGGIF----ALSWLDSQKFATVGADATIRVW 279

Query: 154 DATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYST 213
           D TT      +              V     G  I    + ++  +++       E   T
Sbjct: 280 DVTTSKCVQKWTLDKQQLGNQQV-GVVATGNGRIISLSLDGTLNFYELGHD----EVLKT 334

Query: 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF 273
           + G+     GI + +  +P     L  GSY      +   +M            +  +  
Sbjct: 335 ISGH---NKGITA-LTVNP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDN 380

Query: 274 SRDGNYLYTGGRKDPYILCWDL 295
           S       +    D  +    +
Sbjct: 381 S-KAQEYSSISW-DDTLKVNGI 400

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 35/248 (14%), Positives = 82/248 (33%), Gaps = 38/248 (15%)

Query: 70  PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQD----SYEASLVV---TEGESV 122
                + + S D TL++  + ++         S   D      + +  L++     G+ +
Sbjct: 381 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 440

Query: 123 YDFCWFPHMS----ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS 178
                    S    + +  +             L D        T        + +    
Sbjct: 441 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT----PLRAKPS---Y 493

Query: 179 VAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG- 236
           ++ +P+ T I AG     + ++D+       +           +   ++AI++ P   G 
Sbjct: 494 ISISPSETYIAAGDVMGKILLYDL-------QSREVKTSRWAFRTSKINAISWKPAEKGA 546

Query: 237 --------MLAIGSYSQTSAIYR-EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287
                   ++A GS      IY  +  M+++  L+  + GV ++ +      + +G   D
Sbjct: 547 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGA--D 604

Query: 288 PYILCWDL 295
             I  W++
Sbjct: 605 ACIKRWNV 612

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 32/254 (12%), Positives = 61/254 (24%), Gaps = 67/254 (26%)

Query: 68  WSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EGESVYDF 125
           + P  ++      +   +R                    D    +   VV   G      
Sbjct: 26  YDPTTNAIAYPCGKSAFVRCL------------------DDGDSKVPPVVQFTGHG---- 63

Query: 126 CWFPHMSASDPTSCV----------FASTTRDHPIHLWDATTGLLRCTYRAYDAV----- 170
                   S   + V            S      + +W  T      +            
Sbjct: 64  --------SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL 115

Query: 171 -DEITAAFSVAFNPTGTKIFA---GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS 226
              I+    ++++  G ++     G +                      G   G +  ++
Sbjct: 116 AGPIS---DISWDFEGRRLCVVGEGRDNFGVFISWDS--------GNSLGEVSGHSQRIN 164

Query: 227 AIAFSPTHTGMLAIGSYSQTSAIYREDN---MELLYVLHGQEGGVTHVQFSRD-GNYLYT 282
           A     +            +   Y+             H Q   V  V+FS D G ++ T
Sbjct: 165 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT 224

Query: 283 GGRKDPYILCWDLR 296
            G  D  I C+D +
Sbjct: 225 VGS-DRKISCFDGK 237

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 24/254 (9%), Positives = 62/254 (24%), Gaps = 72/254 (28%)

Query: 64  KGIKWSP---DGSSFLTSSEDKTLRIF---------SLPENGISYDVNACSLAKDQDSYE 111
           +G  ++    D   F T   D T+R++             +          +    +   
Sbjct: 253 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 312

Query: 112 AS---------LVVTEGE----------SVYDFCWFPHMSASDPTSCVFASTTRDHPIHL 152
            S           +   E           +      P +S S            D  I  
Sbjct: 313 ISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSY-----------DGRIME 361

Query: 153 WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKY 211
           W +++     +    + +       S+  +    +     ++ +++V  +          
Sbjct: 362 WSSSSMHQDHS----NLI------VSLDNSK-AQEYSSISWDDTLKVNGI---------- 400

Query: 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HGQEGGVTH 270
                 K          + +    G  A+ +      I +    +++  +     G    
Sbjct: 401 -----TKHEFGSQPKVASANN--DGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS 453

Query: 271 VQFSRDGNYLYTGG 284
           +  +     L  G 
Sbjct: 454 LSQNYVAVGLEEGN 467

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 58.8 bits (143), Expect = 7e-10
 Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 13/128 (10%)

Query: 178 SVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG- 236
            ++++PT   I     KS  V  +              G     + +++ + FSP     
Sbjct: 23  HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG---HGSSVVTTVKFSPIKGSQ 79

Query: 237 MLAIGSYSQT--------SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT-GGRKD 287
            L  G  S                  + +        G ++ + +  +G  L   G  +D
Sbjct: 80  YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 139

Query: 288 PYILCWDL 295
            + +    
Sbjct: 140 NFGVFISW 147

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 23/173 (13%), Positives = 48/173 (27%), Gaps = 17/173 (9%)

Query: 133 ASDPTSCVFASTT-RDHPIHLWDATTG----LLRCTYRAYDAVDEITAAFSVAFNPT--G 185
           + DPT+   A    +   +   D        +++ T      V       +V F+P    
Sbjct: 25  SYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVT------TVKFSPIKGS 78

Query: 186 TKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT-HTGMLAIGSY 243
             +     +  V V+              +K   +  AG +S I++        +     
Sbjct: 79  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 138

Query: 244 SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYL-YTGGRKDPYILCWDL 295
                    D+   L  + G    +      +       T G  D  ++ +  
Sbjct: 139 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD-DGSVVFYQG 190

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 16/140 (11%), Positives = 47/140 (33%), Gaps = 25/140 (17%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           I  SP  +          + +         YD+ +  +   + ++  S        +   
Sbjct: 494 ISISPSETYIAAGDVMGKILL---------YDLQSREVKTSRWAFRTS-------KINAI 537

Query: 126 CWFP---HMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAF 181
            W P     +  +    + A+ + D  I ++     + +     A+   D +    ++ +
Sbjct: 538 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK--DGVN---NLLW 592

Query: 182 NPTGTKIFAGYNKSVRVFDV 201
               T + +G +  ++ ++V
Sbjct: 593 ETPSTLVSSGADACIKRWNV 612

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 16/181 (8%), Positives = 47/181 (25%), Gaps = 52/181 (28%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127
            +         +  +  ++                   D +                   
Sbjct: 456 QNYVAVGLEEGNTIQVFKL------------------SDLEVSFDLKTPLRA-KPSYISI 496

Query: 128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY--DAVDEITAAFSVAFNPTG 185
               S   P+    A+      I L+D  +  ++ +  A+    +       ++++ P  
Sbjct: 497 ----S---PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI------NAISWKPAE 543

Query: 186 TKIF-----------AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH 234
                             + ++ ++ V RP    +    L  +K+G    ++ + +    
Sbjct: 544 KGANEEEIEEDLVATGSLDTNIFIYSVKRPM---KIIKALNAHKDG----VNNLLWETPS 596

Query: 235 T 235
           T
Sbjct: 597 T 597

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 77.2 bits (191), Expect = 3e-16
 Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 15/157 (9%)

Query: 142 ASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPTGTKI-FAGYNKSVRVF 199
            S ++D  + +WD+ T             V       + A+ P+G  +   G +    ++
Sbjct: 71  LSASQDGKLIIWDSYTTNKVHAIPLRSSWV------MTCAYAPSGNYVACGGLDNICSIY 124

Query: 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY 259
           ++     +      L G+     G +S   F       +   S   T A++  +  +   
Sbjct: 125 NLKTREGNVRVSRELAGHT----GYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQQTT 178

Query: 260 VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
              G  G V  +  + D     +G   D     WD+R
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGAC-DASAKLWDVR 214

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 76.4 bits (189), Expect = 5e-16
 Identities = 59/269 (21%), Positives = 92/269 (34%), Gaps = 61/269 (22%)

Query: 68  WSPDGSSFLTSSEDKTLRI---------FSLPENGISYDVNACSLAKDQDSYEASLVVTE 118
           W  D    L++S+D  L I          ++P    S  V  C+ A        + V   
Sbjct: 63  WGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP--LRSSWVMTCAYAPS-----GNYVACG 115

Query: 119 GE----SVYD--------FCWFP---HMSASDP-TSCVF------ASTTRDHPIHLWDAT 156
           G     S+Y+                H   +   + C F       +++ D    LWD  
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGH---TGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 157 TGLLRCTYRAY-DAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTL 214
           TG    T+  +   V       S++  P          + S +++DV    R+     T 
Sbjct: 173 TGQQTTTFTGHTGDV------MSLSLAPDTRLFVSGACDASAKLWDV----REGMCRQTF 222

Query: 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY--REDNMELLYVLHGQEGGVTHVQ 272
            G+   ++ I + I F P      A GS   T  ++  R D   + Y       G+T V 
Sbjct: 223 TGH---ESDINA-ICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277

Query: 273 FSRDGNYLYTGGRKDPYILCWDLRKAVQV 301
           FS+ G  L  G   D     WD  KA + 
Sbjct: 278 FSKSGRLLLAGYD-DFNCNVWDALKADRA 305

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 46/235 (19%), Positives = 87/235 (37%), Gaps = 53/235 (22%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSL-------PENGISYDVNACSLAKDQDSYEASLVVTEGE 120
           +  D    +TSS D T  ++ +          G + DV + SLA                
Sbjct: 151 FLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA---------------- 193

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
                          P + +F S   D    LWD   G+ R T+  ++   +I    ++ 
Sbjct: 194 ---------------PDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDIN---AIC 233

Query: 181 FNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239
           F P G     G  + + R+FD+    R  ++  T     +     +++++FS +   +L 
Sbjct: 234 FFPNGNAFATGSDDATCRLFDL----RADQELMTYSH--DNIICGITSVSFSKSGR-LLL 286

Query: 240 IGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294
            G       ++     +   VL G +  V+ +  + DG  + TG   D ++  W+
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS-WDSFLKIWN 340

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 54.8 bits (133), Expect = 8e-09
 Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 46/145 (31%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIF---------SLPENGISYDVNACSLAKDQDSYEASLVV 116
           I + P+G++F T S+D T R+F         +   + I   + + S +K        L++
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-----GRLLL 286

Query: 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAA 176
                          +  D           D   ++WDA           +D  + ++  
Sbjct: 287 ---------------AGYD-----------DFNCNVWDALKADRAGVLAGHD--NRVS-- 316

Query: 177 FSVAFNPTGTKIFAG-YNKSVRVFD 200
             +     G  +  G ++  +++++
Sbjct: 317 -CLGVTDDGMAVATGSWDSFLKIWN 340

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 14/124 (11%)

Query: 173 ITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP 232
           I  A     + T ++I    +   R+              TL+G+    A I + + +  
Sbjct: 18  IRDARKACADATLSQITNNIDPVGRI--------QMRTRRTLRGH---LAKIYA-MHWGT 65

Query: 233 THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292
               +L   S      I+       ++ +  +   V    ++  GNY+  GG  D     
Sbjct: 66  DSR-LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL-DNICSI 123

Query: 293 WDLR 296
           ++L+
Sbjct: 124 YNLK 127

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 77.1 bits (190), Expect = 4e-16
 Identities = 23/174 (13%), Positives = 48/174 (27%), Gaps = 12/174 (6%)

Query: 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y 192
           S   +    + +    I +W+    ++   Y +    D  +    +   P          
Sbjct: 72  SPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSK 131

Query: 193 NKSVRVFDVH--------RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
           +  + V  V+        +             N       +   AF      +L   +  
Sbjct: 132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL 191

Query: 245 QTSAIYREDNMELLYVLHGQ--EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
               I+    +E L ++      G V+ +    +   L  G      I  WD+R
Sbjct: 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-RGIIDIWDIR 244

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 73.7 bits (181), Expect = 7e-15
 Identities = 34/251 (13%), Positives = 73/251 (29%), Gaps = 46/251 (18%)

Query: 66  IKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124
              SP  + +L T S+   ++I+           N   +   +  Y +SL      +V  
Sbjct: 69  SAVSPGETPYLITGSDQGVIKIW-----------NLKEIIVGE-VYSSSLTYDCSSTVTQ 116

Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAF------- 177
               P+          FA +++D  I +            +  +                
Sbjct: 117 ITMIPN-------FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNE 169

Query: 178 ----SVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS 231
                 AF      +         V +FD+    R  E+   ++ +     G +S+I   
Sbjct: 170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDI----RTLERLQIIENSPR--HGAVSSICID 223

Query: 232 PTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG-----VTHVQFSRDGNYLYTGGRK 286
                +L +G+      I+      L+      +            + ++   +  GG  
Sbjct: 224 EECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIV-VGGSS 281

Query: 287 DPYILCWDLRK 297
             ++  W+  K
Sbjct: 282 KTFLTIWNFVK 292

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 73.7 bits (181), Expect = 7e-15
 Identities = 21/216 (9%), Positives = 56/216 (25%), Gaps = 15/216 (6%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           I   P+  +F  SS+D  + +  +         +       +   + +L           
Sbjct: 117 ITMIPNFDAFAVSSKDGQIIVLKVNHYQ---QESEVKFLNCECIRKINLKNFGKNEYAVR 173

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
                 +  +    +  + T    + ++D  T               ++   S+  +   
Sbjct: 174 MR----AFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVS---SICIDEEC 226

Query: 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
             +  G     + ++D+    R      +           +    F   ++ ++  GS  
Sbjct: 227 CVLILGTTRGIIDIWDI----RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK 282

Query: 245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYL 280
               I+        Y     +   +   F      L
Sbjct: 283 TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL 318

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 52.1 bits (125), Expect = 9e-08
 Identities = 15/138 (10%), Positives = 39/138 (28%), Gaps = 24/138 (17%)

Query: 178 SVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNK-EGQAGIMSAIAFSPTH 234
           S A +P  T           ++++++    ++         +     +  ++ I   P  
Sbjct: 68  SSAVSPGETPYLITGSDQGVIKIWNL----KEIIVGEVYSSSLTYDCSSTVTQITMIPNF 123

Query: 235 TGMLAIGSYSQTSAIYREDNME----------------LLYVLHGQEGGVTHVQFSRDGN 278
               A+ S      + + ++ +                 L      E  V    F  +  
Sbjct: 124 D-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK 182

Query: 279 YLYTGGRKDPYILCWDLR 296
            L         ++ +D+R
Sbjct: 183 SLLVALTNLSRVIIFDIR 200

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 13/125 (10%)

Query: 178 SVAFNPTGTKI--FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235
           +    P       F    + VR  ++        +   +    E +   +++ A SP  T
Sbjct: 22  TFKILPPLRDYKEFGPIQEIVRSPNMGNL-----RGKLIATLMENEPNSITSSAVSPGET 76

Query: 236 GMLAIGSYSQT-----SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290
             L  GS                 +    + +     VT +    + +      + D  I
Sbjct: 77  PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSK-DGQI 135

Query: 291 LCWDL 295
           +   +
Sbjct: 136 IVLKV 140

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 76.4 bits (189), Expect = 5e-16
 Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 49/225 (21%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSL-------PENGISYDVNACSLAKDQDSYEASLVVTEGE 120
           ++      LT+S D T  ++ +         +G   DV    LA  +     +  V    
Sbjct: 162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG---NTFV---- 214

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
                      S              D    +WD  +G     +  ++   ++    SV 
Sbjct: 215 -----------SGGC-----------DKKAMVWDMRSGQCVQAFETHE--SDVN---SVR 247

Query: 181 FNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239
           + P+G    +G  + + R++D+ R  R+    +      E      S++ FS +   +L 
Sbjct: 248 YYPSGDAFASGSDDATCRLYDL-RADREV---AIYSK--ESIIFGASSVDFSLSGR-LLF 300

Query: 240 IGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284
            G    T  ++       + +L G E  V+ ++ S DG    +G 
Sbjct: 301 AGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 73.0 bits (180), Expect = 7e-15
 Identities = 35/247 (14%), Positives = 77/247 (31%), Gaps = 66/247 (26%)

Query: 68  WSPDGSSFLTSSEDKTLRI---------FSLPENGISYDVNACSLAKDQDSYEASLVVTE 118
           W  D    ++SS+D  + +          ++        V AC+ A              
Sbjct: 72  WCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT--MPCTWVMACAYA-------------- 115

Query: 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-------DAVD 171
                            P+ C  A    D+   ++  T                  + + 
Sbjct: 116 -----------------PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYL- 157

Query: 172 EITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF 230
                 + +F  +  +I  A  + +  ++DV   G   +   +  G+    A ++  +  
Sbjct: 158 -----SACSFTNSDMQILTASGDGTCALWDVES-G---QLLQSFHGH---GADVLC-LDL 204

Query: 231 SPTHTG-MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289
           +P+ TG     G   + + ++   + + +      E  V  V++   G+   +G   D  
Sbjct: 205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD-DAT 263

Query: 290 ILCWDLR 296
              +DLR
Sbjct: 264 CRLYDLR 270

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 71.0 bits (175), Expect = 3e-14
 Identities = 48/249 (19%), Positives = 88/249 (35%), Gaps = 58/249 (23%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EGESVYDFC 126
           ++P G +      D    +         Y +       D++   A+   +          
Sbjct: 114 YAPSGCAIACGGLDNKCSV---------YPL-----TFDKNENMAAKKKSVAM------- 152

Query: 127 WFPHMSASDP-TSCVF-------ASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAF 177
              H   ++  ++C F        + + D    LWD  +G L  ++  +   V       
Sbjct: 153 ---H---TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV------L 200

Query: 178 SVAFNPTGT-KIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH 234
            +   P+ T   F   G +K   V+D+ R G+  +     + +   ++ + S + + P+ 
Sbjct: 201 CLDLAPSETGNTFVSGGCDKKAMVWDM-RSGQCVQ---AFETH---ESDVNS-VRYYPSG 252

Query: 235 TGMLAIGSYSQTSAIY--REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292
               A GS   T  +Y  R D    +Y       G + V FS  G  L+ G   D  I  
Sbjct: 253 D-AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN-DYTINV 310

Query: 293 WDLRKAVQV 301
           WD+ K  +V
Sbjct: 311 WDVLKGSRV 319

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 43/241 (17%), Positives = 86/241 (35%), Gaps = 40/241 (16%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT----EG--ES 121
              +  S     E++  ++         +DV    +A+  ++    ++ T    +G    
Sbjct: 16  LKSEAESLKGKLEEERAKL---------HDVELHQVAERVEALGQFVMKTRRTLKGHGNK 66

Query: 122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVA 180
           V    W       D    V +S  +D  + +WD+ T             V       + A
Sbjct: 67  VLCMDWCK-----DKRRIVSSS--QDGKVIVWDSFTTNKEHAVTMPCTWV------MACA 113

Query: 181 FNPTGTKI-FAGYNKSVRVFDVHRPGRDF--EKYSTLKGNKEGQAGIMSAIAFSPTHTGM 237
           + P+G  I   G +    V+ +     +    K  ++  +       +SA +F+ +    
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT----NYLSACSFTNSDM-Q 168

Query: 238 LAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD--GNYLYTGGRKDPYILCWDL 295
           +   S   T A++  ++ +LL   HG    V  +  +    GN   +GG  D   + WD+
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC-DKKAMVWDM 227

Query: 296 R 296
           R
Sbjct: 228 R 228

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 42/141 (29%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           +++ P G +F + S+D T R++         D+ A             + +   ES    
Sbjct: 246 VRYYPSGDAFASGSDDATCRLY---------DLRADRE----------VAIYSKES--II 284

Query: 126 CWFPHMSASDPTSCVF-------ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS 178
                      +S  F        +   D+ I++WD   G        ++  + ++   +
Sbjct: 285 FGA--------SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE--NRVS---T 331

Query: 179 VAFNPTGTKIF-AGYNKSVRV 198
           +  +P GT      ++ ++RV
Sbjct: 332 LRVSPDGTAFCSGSWDHTLRV 352

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 76.1 bits (188), Expect = 8e-16
 Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 43/221 (19%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVY 123
           + + P  S  +++SED T++++   E G                +E +L   +G  +SV 
Sbjct: 114 VIFHPVFSVMVSASEDATIKVWDY-ETG---------------DFERTL---KGHTDSVQ 154

Query: 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP 183
           D  +       D +  + AS + D  I LWD        T   +D    +    SV+  P
Sbjct: 155 DISF-------DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD--HNV---SSVSIMP 202

Query: 184 TGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS 242
            G  I  A  +K++++++V   G   +   T  G++E     +  +  +   T ++A  S
Sbjct: 203 NGDHIVSASRDKTIKMWEVQT-GYCVK---TFTGHREW----VRMVRPNQDGT-LIASCS 253

Query: 243 YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG 283
             QT  ++     E    L      V  + ++ + +Y    
Sbjct: 254 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 43/253 (16%), Positives = 82/253 (32%), Gaps = 66/253 (26%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EG--ESVYD 124
           +   G    + S D T++++                  D   +E   + T  G   +V  
Sbjct: 158 FDHSGKLLASCSADMTIKLW------------------DFQGFE--CIRTMHGHDHNVSS 197

Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT 184
                      P      S +RD  I +W+  TG    T+  +   + +     V  N  
Sbjct: 198 VSI-------MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EWVR---MVRPNQD 245

Query: 185 GTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
           GT I     +++VRV+ V       E  + L+ ++     ++  I+++P  +   +I   
Sbjct: 246 GTLIASCSNDQTVRVWVVATK----ECKAELREHR----HVVECISWAPESS-YSSISEA 296

Query: 244 SQTSAIYR-----------EDNM---------ELLYVLHGQEGGVTHVQFSRDGNYLYTG 283
           + +                 D             L  L G +  V  V F   G ++ + 
Sbjct: 297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 356

Query: 284 GRKDPYILCWDLR 296
              D  +  WD +
Sbjct: 357 AD-DKTLRVWDYK 368

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 67.6 bits (166), Expect = 6e-13
 Identities = 43/238 (18%), Positives = 74/238 (31%), Gaps = 78/238 (32%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGI--------SYDVNACSLAKDQDSYEASLVVTEG 119
            + DG+   + S D+T+R++ +              + V   S A +  SY +    T  
Sbjct: 242 PNQDGTLIASCSNDQTVRVWVV-ATKECKAELREHRHVVECISWAPE-SSYSSISEATGS 299

Query: 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSV 179
           E+            S        S +RD  I +WD +TG+   T   +D  + +     V
Sbjct: 300 ETK----------KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD--NWVR---GV 344

Query: 180 AFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238
            F+  G  I     +K++RV+D                                      
Sbjct: 345 LFHSGGKFILSCADDKTLRVWDYK--------------------------------NK-- 370

Query: 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
                              +  L+  E  VT + F +   Y+ TG   D  +  W+ R
Sbjct: 371 -----------------RCMKTLNAHEHFVTSLDFHKTAPYVVTGSV-DQTVKVWECR 410

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 27/168 (16%), Positives = 60/168 (35%), Gaps = 17/168 (10%)

Query: 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF 189
            ++ +           +      W                V        V F+P  + + 
Sbjct: 71  KLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPV------TRVIFHPVFSVMV 124

Query: 190 AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSA 248
           +   + +++V+D        +   TLKG+      +   I+F  +   +LA  S   T  
Sbjct: 125 SASEDATIKVWDY----ETGDFERTLKGH---TDSVQD-ISFDHSGK-LLASCSADMTIK 175

Query: 249 IYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
           ++     E +  +HG +  V+ V    +G+++ +  R D  I  W+++
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR-DKTIKMWEVQ 222

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 17/146 (11%)

Query: 142 ASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVF 199
            S + D  I +WD  TG    T + + D+V        ++F+ +G  +     + +++++
Sbjct: 124 VSASEDATIKVWDYETGDFERTLKGHTDSV------QDISFDHSGKLLASCSADMTIKLW 177

Query: 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY 259
           D       FE   T+ G+       +S+++  P     +   S  +T  ++       + 
Sbjct: 178 DFQ----GFECIRTMHGHD----HNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVK 228

Query: 260 VLHGQEGGVTHVQFSRDGNYLYTGGR 285
              G    V  V+ ++DG  + +   
Sbjct: 229 TFTGHREWVRMVRPNQDGTLIASCSN 254

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 42/155 (27%)

Query: 54  RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113
            +S       +  K    G   L+ S DKT+++         +DV+              
Sbjct: 290 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKM---------WDVSTGMC---------- 330

Query: 114 LVVTEG--ESVYDFCWFPH----MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY 167
           L+   G    V    +       +S +D           D  + +WD        T  A+
Sbjct: 331 LMTLVGHDNWVRGVLFHSGGKFILSCAD-----------DKTLRVWDYKNKRCMKTLNAH 379

Query: 168 DAVDEITAAFSVAFNPTGTKI-FAGYNKSVRVFDV 201
           +    +T   S+ F+ T   +     +++V+V++ 
Sbjct: 380 E--HFVT---SLDFHKTAPYVVTGSVDQTVKVWEC 409

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 75.9 bits (187), Expect = 1e-15
 Identities = 34/238 (14%), Positives = 70/238 (29%), Gaps = 47/238 (19%)

Query: 68  WSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EG--ESVY 123
           W P   S +   S+   + ++                  +    +    +   G   S+ 
Sbjct: 127 WHPTHPSTVAVGSKGGDIMLW------------------NFGIKDKPTFIKGIGAGGSIT 168

Query: 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP 183
              +    +  +  +  F +++ +    L D    +LR    +           S+  + 
Sbjct: 169 GLKF----NPLN--TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFC---SLDVSA 219

Query: 184 TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS 242
           +   +  G    +V + ++   G+   +   L+ +K     +   +A +P     LA  S
Sbjct: 220 SSRMVVTGDNVGNVILLNMD--GK---ELWNLRMHK---KKVTH-VALNPCCDWFLATAS 270

Query: 243 YSQT----SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
             QT               LY        V    FS DG  L T  +    I  +   
Sbjct: 271 VDQTVKIWDLRQVRGKASFLY-SLPHRHPVNAACFSPDGARLLTTDQ-KSEIRVYSAS 326

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 40/252 (15%), Positives = 77/252 (30%), Gaps = 54/252 (21%)

Query: 65  GIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY 123
           G+K++P + + F  SS + T R+          D     L           V    +++ 
Sbjct: 169 GLKFNPLNTNQFYASSMEGTTRL---------QDFKGNILR----------VFASSDTIN 209

Query: 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP 183
              WF  +  S  +S +  +      + L +     L    R +    ++T    VA NP
Sbjct: 210 I--WFCSLDVS-ASSRMVVTGDNVGNVILLNMDGKELW-NLRMHK--KKVT---HVALNP 260

Query: 184 TGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
                 A    +++V+++D+ R  R    +     ++      ++A  FSP     L   
Sbjct: 261 CCDWFLATASVDQTVKIWDL-RQVRGKASFLYSLPHR----HPVNAACFSPDGA-RLLTT 314

Query: 242 SYSQTSAIYREDNMELLYVLHGQE-----------------GGVTHVQFSRDGNYLYTGG 284
                  +Y     +    L                       +  V    D N+     
Sbjct: 315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP 374

Query: 285 RKDPYILCWDLR 296
            +   I  +D  
Sbjct: 375 YELRTIDVFDGN 386

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 31/257 (12%), Positives = 77/257 (29%), Gaps = 62/257 (24%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDF 125
            S      +T      + + ++  +G                    L       + V   
Sbjct: 217 VSASSRMVVTGDNVGNVILLNM--DG------------------KELWNLRMHKKKVTHV 256

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY----DAVDEITAAFSVAF 181
              P          + A+ + D  + +WD      + ++         V       +  F
Sbjct: 257 ALNP-----CCDWFL-ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV------NAACF 304

Query: 182 NPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKG--NKEGQAGIMSAIAFSPTHTGML 238
           +P G ++        +RV+        ++    L    ++  Q       A+ P +  ++
Sbjct: 305 SPDGARLLTTDQKSEIRVYSA----SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYN-LI 359

Query: 239 AIGSYS--QTSAIYREDNM----------ELLYVLH-GQEGGVTHVQ-FSRDGNYLYTGG 284
            +G Y      +    +            +++  L+  +  G++ +  F+  G+ L +  
Sbjct: 360 VVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM 419

Query: 285 RKDPYILCWDLRKAVQV 301
               +IL W  ++A   
Sbjct: 420 --GYHILIWSQQEARTR 434

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 26/176 (14%), Positives = 46/176 (26%), Gaps = 26/176 (14%)

Query: 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188
               A    +     + R     LW    G              +    S+       K+
Sbjct: 38  LEPEAKKLCAKGSGPSRRCDSDCLWVGLAGPQI-----------LPPCRSIVRTLHQHKL 86

Query: 189 FAGYNKSVRVFDVHRPGRDFEKYS---TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ 245
                 SV+           + Y                 S +A+ PTH   +A+GS   
Sbjct: 87  GRASWPSVQQGLQQSFLHTLDSYRILQKAAPF---DRRATS-LAWHPTHPSTVAVGSKGG 142

Query: 246 TSAI----YREDNMELLYVLHGQEGGVTHVQFS-RDGNYLYTGGRKDPYILCWDLR 296
              I    +   +        G  G +T ++F+  + N  Y     +      D +
Sbjct: 143 D--IMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM-EGTTRLQDFK 195

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 54/241 (22%), Positives = 91/241 (37%), Gaps = 51/241 (21%)

Query: 68  WSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC 126
              D +  + S S DK++ ++ L ++  +Y V    L               G       
Sbjct: 390 TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL--------------TG------- 428

Query: 127 WFPHMSASDP-TSCVF-------ASTTRDHPIHLWDATTGLLRCTYRA-YDAVDEITAAF 177
              H   S      V         S + D  + LWD   G+    +      V       
Sbjct: 429 ---H---SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDV------L 476

Query: 178 SVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP-THT 235
           SVAF+    +I +   ++++++++        E   T+    EG    +S + FSP T  
Sbjct: 477 SVAFSLDNRQIVSASRDRTIKLWNTLG-----ECKYTISEGGEGHRDWVSCVRFSPNTLQ 531

Query: 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
             +   S+ +T  ++   N +L   L G  G V+ V  S DG+   +GG KD  +L WDL
Sbjct: 532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWDL 590

Query: 296 R 296
            
Sbjct: 591 A 591

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 40/249 (16%), Positives = 85/249 (34%), Gaps = 58/249 (23%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDF 125
           +S D    +++S D+T+++         ++          +  E       G  + V   
Sbjct: 480 FSLDNRQIVSASRDRTIKL---------WNTLGECKYTISEGGE-------GHRDWVSCV 523

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPT 184
            + P     +       S + D  + +W+ +   LR T   +   V       +VA +P 
Sbjct: 524 RFSP-----NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYV------STVAVSPD 572

Query: 185 GTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP----------- 232
           G+     G +  V ++D+     + +K  +L+ N      ++ A+ FSP           
Sbjct: 573 GSLCASGGKDGVVLLWDL----AEGKKLYSLEAN-----SVIHALCFSPNRYWLCAATEH 623

Query: 233 ------THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286
                   +  +         A   + +         +    T + +S DG+ L++G   
Sbjct: 624 GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT- 682

Query: 287 DPYILCWDL 295
           D  I  W +
Sbjct: 683 DGVIRVWGI 691

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 15/151 (9%)

Query: 150 IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFE 209
             + +A  G +        A     A  +   N    +             +     +  
Sbjct: 319 ATMENAQKGEIMPNIPQMSAF--WYAVRTAVINAASGRQTVDA-------ALAAAQTNAA 369

Query: 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT----SAIYREDNM-ELLYVLHGQ 264
               LKG       +++AIA    +  ++   S  ++         +         L G 
Sbjct: 370 AGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH 429

Query: 265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
              V  V  S DG +  +G   D  +  WDL
Sbjct: 430 SHFVEDVVLSSDGQFALSGSW-DGELRLWDL 459

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 29/175 (16%), Positives = 55/175 (31%), Gaps = 12/175 (6%)

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
             F +    +  +  S                A   +L+ T RA+   D +T   ++A  
Sbjct: 337 SAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHT--DMVT---AIATP 391

Query: 183 PTGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
                I      +KS+ ++ + +   D + Y   +    G +  +  +  S         
Sbjct: 392 IDNADIIVSASRDKSIILWKLTK---DDKAYGVAQRRLTGHSHFVEDVVLSSDGQ-FALS 447

Query: 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
           GS+     ++            G    V  V FS D   + +  R D  I  W+ 
Sbjct: 448 GSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR-DRTIKLWNT 501

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 73.7 bits (182), Expect = 3e-15
 Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 46/232 (19%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDF 125
            S       +SS D  +R++ L ENG                    +   +      +  
Sbjct: 88  ISHTLPIAASSSLDAHIRLWDL-ENG------------------KQIKSIDAGPVDAWTL 128

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPT 184
            +        P S   A+ T    ++++   +G    +       +       S+A++P 
Sbjct: 129 AF-------SPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI------LSIAYSPD 175

Query: 185 GTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
           G  +     +  + +FD+   G+      TL+G+      I S + FSP    +L   S 
Sbjct: 176 GKYLASGAIDGIINIFDIAT-GKLLH---TLEGH---AMPIRS-LTFSPDSQ-LLVTASD 226

Query: 244 SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
                IY   +  L   L G    V +V F  D  +  +    D  +  WD+
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS-DKSVKVWDV 277

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 72.1 bits (178), Expect = 1e-14
 Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 52/233 (22%)

Query: 74  SFLTSSEDKTLRIFSL-------PENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC 126
               SS +      +         E      + + +   ++     ++V           
Sbjct: 4   HHHHSSRENLYFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVV----------- 52

Query: 127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPT 184
                + S            D  + +W      L    +   +     +    SV  + T
Sbjct: 53  -----TGSL-----------DDLVKVWKWRDERLDLQWSLEGHQ--LGVV---SVDISHT 91

Query: 185 GTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
                 +  +  +R++D+     + ++  ++     G     + +AFSP     LA G++
Sbjct: 92  LPIAASSSLDAHIRLWDLE----NGKQIKSIDA---GPVDAWT-LAFSPDSQ-YLATGTH 142

Query: 244 SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
                I+  ++ +  Y L  +   +  + +S DG YL +G   D  I  +D+ 
Sbjct: 143 VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI-DGIINIFDIA 194

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 69.8 bits (172), Expect = 7e-14
 Identities = 38/237 (16%), Positives = 75/237 (31%), Gaps = 56/237 (23%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127
           +SPD     T +    + I         + V +                 +         
Sbjct: 130 FSPDSQYLATGTHVGKVNI---------FGVESGKK----------EYSLDT-------- 162

Query: 128 FPHMSASDPTSCV-F-------ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSV 179
                       + +       AS   D  I+++D  TG L  T   +     I    S+
Sbjct: 163 --R---GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA--MPIR---SL 212

Query: 180 AFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238
            F+P    +  A  +  ++++DV           TL     G A  +  +AF P  T   
Sbjct: 213 TFSPDSQLLVTASDDGYIKIYDVQH-A---NLAGTL----SGHASWVLNVAFCPDDT-HF 263

Query: 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
              S  ++  ++       ++     +  V  V+++ +G+ + + G  D  I  +D 
Sbjct: 264 VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG-DDQEIHIYDC 319

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 73.8 bits (182), Expect = 5e-15
 Identities = 35/236 (14%), Positives = 73/236 (30%), Gaps = 36/236 (15%)

Query: 68  WSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE-----GES 121
           WSP     L + S D  ++++ +         + C +  DQ + + S  V          
Sbjct: 194 WSPRYDYILATASADSRVKLWDV-RRA-----SGCLITLDQHNGKKSQAVESANTAHNGK 247

Query: 122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYR---AYDAVDEITAAFS 178
           V   C+       D       +   D+ + LW+++ G            ++   +    S
Sbjct: 248 VNGLCFTS-----D--GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS 300

Query: 179 VAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238
              +     +F  Y  ++ V+ V+      E+ + LKG+       +    F       L
Sbjct: 301 CGCSSEF--VFVPYGSTIAVYTVY----SGEQITMLKGHY----KTVDCCVFQSNFQ-EL 349

Query: 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294
             GS       +      L   +   +   T  Q +      ++   ++     W 
Sbjct: 350 YSGSRDCNILAW---VPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWS 402

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 43/250 (17%), Positives = 78/250 (31%), Gaps = 55/250 (22%)

Query: 68  WSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYD 124
           W P D   F +SS DKTL++         +D N    A                 E+VY 
Sbjct: 107 WYPHDTGMFTSSSFDKTLKV---------WDTNTLQTAD-----------VFNFEETVYS 146

Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNP 183
                  S      C+ A  TR   + L D  +G      + +   +       +V+++P
Sbjct: 147 HHM----SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI------LAVSWSP 196

Query: 184 TGTKIFA--GYNKSVRVFDVHR--------PGRDFEKYSTLKGNKEGQAGIMSAIAFSP- 232
               I A    +  V+++DV R           + +K   ++       G ++ + F+  
Sbjct: 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256

Query: 233 -THTGMLAIGSYSQTSAIYREDNMELLYVLHG-----QEGGVTHVQFSRDGNYLYTGGRK 286
             H   L          ++   N E   V +G      + G+         +        
Sbjct: 257 GLH---LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY- 312

Query: 287 DPYILCWDLR 296
              I  + + 
Sbjct: 313 GSTIAVYTVY 322

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 67.3 bits (165), Expect = 7e-13
 Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 23/174 (13%)

Query: 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAF--------SVAFNPTGTKIFA--G 191
            S   D  I L+D      +  Y                     +V + P  T +F    
Sbjct: 60  LSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119

Query: 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP--THTGMLAIGSYSQTSAI 249
           ++K+++V+D +       + + +      +  + S    SP  T   ++A+G+      +
Sbjct: 120 FDKTLKVWDTNT-----LQTADVFN---FEETVYS-HHMSPVSTKHCLVAVGTRGPKVQL 170

Query: 250 YREDNMELLYVLHGQEGGVTHVQFSRDGNY-LYTGGRKDPYILCWDLRKAVQVV 302
               +    ++L G    +  V +S   +Y L T    D  +  WD+R+A   +
Sbjct: 171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA-DSRVKLWDVRRASGCL 223

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 67.3 bits (165), Expect = 8e-13
 Identities = 43/243 (17%), Positives = 80/243 (32%), Gaps = 49/243 (20%)

Query: 66  IKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESV 122
           +   P +G   L+   D  + ++ L EN      +  S    +          +    SV
Sbjct: 49  LDIEPVEGRYMLSGGSDGVIVLYDL-ENS-----SRQSYYTCKAVCSIGRDHPDVHRYSV 102

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
               W+PH    D  + +F S++ D  + +WD  T      +   + V      +S   +
Sbjct: 103 ETVQWYPH----D--TGMFTSSSFDKTLKVWDTNTLQTADVFNFEETV------YSHHMS 150

Query: 183 PTGTKIF----AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238
           P  TK            V++ D+    +       L    +G    + A+++SP +  +L
Sbjct: 151 PVSTKHCLVAVGTRGPKVQLCDL----KSGSCSHIL----QGHRQEILAVSWSPRYDYIL 202

Query: 239 AIGSYSQT----------------SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT 282
           A  S                         + +  +        G V  + F+ DG +L T
Sbjct: 203 ATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT 262

Query: 283 GGR 285
            G 
Sbjct: 263 VGT 265

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 23/181 (12%), Positives = 50/181 (27%), Gaps = 39/181 (21%)

Query: 65  GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124
           G+ ++ DG   LT   D  +R+++   NG                   + +V  G+   +
Sbjct: 250 GLCFTSDGLHLLTVGTDNRMRLWNS-SNG------------------ENTLVNYGKVCNN 290

Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA-YDAVDEITAAFSVAFNP 183
                  + S   S  F        I ++   +G      +  Y  V          F  
Sbjct: 291 SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTV------DCCVFQS 344

Query: 184 TGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS 242
              +++    + ++  +           Y  +  + E      +    +P         S
Sbjct: 345 NFQELYSGSRDCNILAWVP-------SLYEPVPDDDET----TTKSQLNPAFE-DAWSSS 392

Query: 243 Y 243
            
Sbjct: 393 D 393

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 22/177 (12%), Positives = 50/177 (28%), Gaps = 21/177 (11%)

Query: 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPT-GTKI 188
                           +    +        R   R +   +       ++   P  G  +
Sbjct: 8   RQTGLEDPLRLRRA--ESTRRVLGLELNKDRDVERIHGGGI------NTLDIEPVEGRYM 59

Query: 189 -FAGYNKSVRVFDV-----HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS 242
              G +  + ++D+               S  + + +     +  + + P  TGM    S
Sbjct: 60  LSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119

Query: 243 YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN---YLYTGGRKDPYILCWDLR 296
           + +T  ++  + ++   V    E  V     S        +  G R  P +   DL+
Sbjct: 120 FDKTLKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVAVGTR-GPKVQLCDLK 174

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 14/240 (5%), Positives = 31/240 (12%), Gaps = 47/240 (19%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EG--ESVYD 124
                       + +T  I+     G                         +     +  
Sbjct: 33  NCDFQM-ERYVYKRRTDGIYI-INLG-------------------KTWEKLQLAARVIVA 71

Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNP 183
                     D                L  A           +          F+     
Sbjct: 72  IENPQ-----DIIVQSARP--YGQRAVLKFAQYTGAHAIAGRHTPGT------FTNQLQT 118

Query: 184 TGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS 242
           + ++                +         T+             I     + G  +IG 
Sbjct: 119 SFSEPRLLILTDPRTDHQPIK-ESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGC 177

Query: 243 YSQTSAIYREDNMELLYVL-----HGQEGGVTHVQF-SRDGNYLYTGGRKDPYILCWDLR 296
                A         +                  +                 Y    +  
Sbjct: 178 LFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVA-PDYGAVAEYA 236

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 5/247 (2%), Positives = 15/247 (6%), Gaps = 59/247 (23%)

Query: 68  WSPDGSSFLTSSEDKTLRI---------FSLPENGISYDVNACSLAKDQDSYEASLVVTE 118
              D          +   +                 +       L               
Sbjct: 74  NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAG--RHTPGTFTNQLQTS------------ 119

Query: 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV-----DEI 173
                                         P                             
Sbjct: 120 FSEP-------------------RLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRY 160

Query: 174 TAAFSVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNK-EGQAGIMSAIAF 230
                +          +       +    +                              
Sbjct: 161 V---DIGIPANNKGKQSIGCLFWLLARMVLQMR----GTILPGHKWDVMVDLFFYRDPEE 213

Query: 231 SPTHTGMLAIGSYSQTSAIY-REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289
           +       A        A+          +                              
Sbjct: 214 AKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQAGADWTAA-PAP 272

Query: 290 ILCWDLR 296
                  
Sbjct: 273 AAGGWDT 279

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 7/120 (5%), Positives = 24/120 (20%), Gaps = 14/120 (11%)

Query: 178 SVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP--THT 235
                    + +    ++  ++ +       + +  L+        I++ I         
Sbjct: 30  GTKNCDFQMERYVYKRRTDGIYII----NLGKTWEKLQLA---ARVIVA-IENPQDIIV- 80

Query: 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
              +   Y Q + +          +      G    Q     +                 
Sbjct: 81  --QSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLIL-TDPRTDHQP 137

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 7/77 (9%), Positives = 16/77 (20%), Gaps = 3/77 (3%)

Query: 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278
              A +            M       +T  IY  +  +    L      +  ++  +D  
Sbjct: 22  MLAADVHLGTKNCDF--QMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDII 79

Query: 279 YLYTGGRKDPYILCWDL 295
                       +    
Sbjct: 80  VQSARPY-GQRAVLKFA 95

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 72.5 bits (179), Expect = 8e-15
 Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 47/237 (19%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVY 123
           +K+SP+G    +SS DK ++I+    +G                +E ++    G    + 
Sbjct: 29  VKFSPNGEWLASSSADKLIKIWGA-YDG---------------KFEKTI---SGHKLGIS 69

Query: 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFN 182
           D  W          S +  S + D  + +WD ++G    T + + + V      F   FN
Sbjct: 70  DVAW-------SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV------FCCNFN 116

Query: 183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
           P    I +G +++SVR++DV   G+  +   TL  + +     +SA+ F+   + ++   
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKT-GKCLK---TLPAHSDP----VSAVHFNRDGS-LIVSS 167

Query: 242 SYSQTSAIYREDNMELLYVL-HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
           SY     I+   + + L  L       V+ V+FS +G Y+      D  +  WD  K
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDYSK 223

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 69.0 bits (170), Expect = 1e-13
 Identities = 46/236 (19%), Positives = 91/236 (38%), Gaps = 48/236 (20%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EG--ESVYD 124
           WS D +  +++S+DKTL+I+ +  +G                     + T +G    V+ 
Sbjct: 73  WSSDSNLLVSASDDKTLKIWDV-SSG-------------------KCLKTLKGHSNYVFC 112

Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT 184
             +       +P S +  S + D  + +WD  TG    T  A+   D ++   +V FN  
Sbjct: 113 CNF-------NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVS---AVHFNRD 160

Query: 185 GTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
           G+ I  + Y+   R++D        +   TL    +     +S + FSP     +   + 
Sbjct: 161 GSLIVSSSYDGLCRIWDT----ASGQCLKTL---IDDDNPPVSFVKFSPNGK-YILAATL 212

Query: 244 SQTSAIYREDNMELLYVLHGQEGGVTHVQFSR---DGNYLYTGGRKDPYILCWDLR 296
             T  ++     + L    G +     +  +     G ++ +G   D  +  W+L+
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQ 267

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 65.2 bits (160), Expect = 3e-12
 Identities = 43/229 (18%), Positives = 79/229 (34%), Gaps = 51/229 (22%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127
           ++P  +  ++ S D+++RI         +DV                    G+ +     
Sbjct: 115 FNPQSNLIVSGSFDESVRI---------WDVKT------------------GKCLKTLPA 147

Query: 128 FPHMSASDPTSCV--------FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSV 179
             H   SDP S V          S++ D    +WD  +G    T    D    ++    V
Sbjct: 148 --H---SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVS---FV 198

Query: 180 AFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238
            F+P G  I A   + +++++D  +     +   T  G+K  +  I     FS T    +
Sbjct: 199 KFSPNGKYILAATLDNTLKLWDYSKG----KCLKTYTGHKNEKYCI--FANFSVTGGKWI 252

Query: 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287
             GS      I+     E++  L G    V         N + +   ++
Sbjct: 253 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 301

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 55.9 bits (136), Expect = 4e-09
 Identities = 34/157 (21%), Positives = 66/157 (42%), Gaps = 22/157 (14%)

Query: 142 ASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPTGTKI-FAGYNKSVRVF 199
           A+ ++  P+         L+ T   +  AV       SV F+P G  +  +  +K ++++
Sbjct: 1   ATQSKPTPV----KPNYALKFTLAGHTKAV------SSVKFSPNGEWLASSSADKLIKIW 50

Query: 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY 259
             +    D +   T+ G+K G    +S +A+S     +L   S  +T  I+   + + L 
Sbjct: 51  GAY----DGKFEKTISGHKLG----ISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLK 101

Query: 260 VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            L G    V    F+   N + +G   D  +  WD++
Sbjct: 102 TLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVK 137

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 45.9 bits (110), Expect = 6e-06
 Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 35/142 (24%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVY 123
           +K+SP+G   L ++ D TL++         +D +              L    G     Y
Sbjct: 198 VKFSPNGKYILAATLDNTLKL---------WDYSKGKC----------LKTYTGHKNEKY 238

Query: 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFN 182
                   + S        S + D+ +++W+  T  +    + + D V       S A +
Sbjct: 239 CIFA----NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV------ISTACH 288

Query: 183 PTGTKIFAG---YNKSVRVFDV 201
           PT   I +     +K+++++  
Sbjct: 289 PTENIIASAALENDKTIKLWKS 310

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 47/239 (19%), Positives = 84/239 (35%), Gaps = 47/239 (19%)

Query: 64  KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY 123
           KGI + P     LT+     + I         ++       +       S+ VTE   V 
Sbjct: 17  KGIDFHPTEPWVLTTLYSGRVEI---------WNYETQVEVR-------SIQVTET-PVR 59

Query: 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP 183
              +                 + D  I +++  TG     + A+   D I    S+A +P
Sbjct: 60  AGKFI-------ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP--DYIR---SIAVHP 107

Query: 184 TGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS 242
           T   +     + +V++++      ++    T +G+   +  +M  +AF+P      A G 
Sbjct: 108 TKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGH---EHFVMC-VAFNPKDPSTFASGC 160

Query: 243 YSQT----SAIYREDNMELLYVLHGQEGGVTHVQFSR--DGNYLYTGGRKDPYILCWDL 295
             +T    S      +     +  GQE GV +V +    D  Y+ T    D  I  WD 
Sbjct: 161 LDRTVKVWSL---GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDY 215

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 71.3 bits (175), Expect = 6e-14
 Identities = 39/245 (15%), Positives = 74/245 (30%), Gaps = 57/245 (23%)

Query: 65  GIKWSPDGSSFLTSSEDKTLRIFSL-------PENGISYDVNACSLAKDQDSYEASLVVT 117
             K+    +  +  S+D  +R+F+                + + ++           V+ 
Sbjct: 60  AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-----HPTKPYVL- 113

Query: 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAY-DAVDEITA 175
                         S SD           D  + LW+      L  T+  +   V     
Sbjct: 114 --------------SGSD-----------DLTVKLWNWENNWALEQTFEGHEHFV----- 143

Query: 176 AFSVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233
              VAFNP     FA    +++V+V+ + +         TL     GQ   ++ + + P 
Sbjct: 144 -MCVAFNPKDPSTFASGCLDRTVKVWSLGQS----TPNFTLT---TGQERGVNYVDYYPL 195

Query: 234 HTG-MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC 292
                +   S   T  I+       +  L G    V+   F      + +G   D  +  
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE-DGTLKI 254

Query: 293 WDLRK 297
           W+   
Sbjct: 255 WNSST 259

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 58.6 bits (142), Expect = 7e-10
 Identities = 42/273 (15%), Positives = 89/273 (32%), Gaps = 62/273 (22%)

Query: 60  NNFLKGIKWSP-DGSSFLTSSEDKTLRIFSL--------PENGISYDVNACSLAKDQDSY 110
            +F+  + ++P D S+F +   D+T++++SL           G    VN        D  
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK- 198

Query: 111 EASLVVTEGE----SVYDF----CWFP---HMSASDPTSCV--------FASTTRDHPIH 151
               ++T  +     ++D+    C      H       S            S + D  + 
Sbjct: 199 --PYMITASDDLTIKIWDYQTKSCVATLEGH---MSNVSFAVFHPTLPIIISGSEDGTLK 253

Query: 152 LWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDF 208
           +W+++T  +  T     +        + +A +PTG K +  +G++    V  +   G D 
Sbjct: 254 IWNSSTYKVEKTLNVGLERS------WCIATHPTGRKNYIASGFDNGFTVLSL---GNDE 304

Query: 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-----SAIYREDNMELLYVLHG 263
               +L             + +S       A   ++            E        L  
Sbjct: 305 PTL-SLDPV--------GKLVWSG-GKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGS 354

Query: 264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            +     +  S +G ++   G  + Y++   L 
Sbjct: 355 VDVFPQSLAHSPNGRFVTVVGDGE-YVIYTALA 386

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 14/121 (11%), Positives = 38/121 (31%), Gaps = 11/121 (9%)

Query: 178 SVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG 236
            + F+PT   +    Y+  V +++         +  ++    +     + A  F      
Sbjct: 18  GIDFHPTEPWVLTTLYSGRVEIWNY----ETQVEVRSI----QVTETPVRAGKFIARKN- 68

Query: 237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            + +GS      ++  +  E +         +  +       Y+ +G   D  +  W+  
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-DLTVKLWNWE 127

Query: 297 K 297
            
Sbjct: 128 N 128

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 32/277 (11%), Positives = 67/277 (24%), Gaps = 66/277 (23%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSL-------PENGISYDVNACSLAKD-QDSYEAS------ 113
           + P     ++ SED TL+I++          N         +     + +Y AS      
Sbjct: 236 FHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGF 295

Query: 114 --------LVVTEGESVYDFCWFPHMSAS-----DPTSCVFASTTRDHPIHLWDATTGLL 160
                         + V    W    +A+                +D P+ L     G  
Sbjct: 296 TVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELG-- 353

Query: 161 RCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRD------------- 207
                            S+A +P G  +    +    ++                     
Sbjct: 354 ----SVDVFPQ------SLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFVWGPD 403

Query: 208 ------FEKYSTLKGNKEGQAGIMSAIAFSPT----HTGMLAIGSYSQTSAIYREDNMEL 257
                  ++   +K  K  +     ++          +G L           +  DN  L
Sbjct: 404 SNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTL 463

Query: 258 LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294
           +  +   +     V +S +G  +      +       
Sbjct: 464 VRRI---DVNAKDVIWSDNGELVMIVN-TNSNGDEAS 496

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 30/232 (12%), Positives = 59/232 (25%), Gaps = 47/232 (20%)

Query: 64  KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY 123
           +   W PD +S+    E   ++ +   +   S+ V                         
Sbjct: 396 QDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVP------------------------ 431

Query: 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP 183
                 H +     S        D  ++ +D   G      R             V ++ 
Sbjct: 432 -----MHSAIDRLFSGALLGVKSDGFVYFFDWDNG--TLVRRIDVNAK------DVIWSD 478

Query: 184 TGTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI-- 240
            G  +     N +      +    + + Y     N           AF   +    +I  
Sbjct: 479 NGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITS 538

Query: 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTH-------VQFSRDGNYLYTGGR 285
           G +     I+      L Y + G+   + H       + +    N +Y   R
Sbjct: 539 GKWVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADR 590

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 39/260 (15%), Positives = 78/260 (30%), Gaps = 58/260 (22%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127
           +S D   +  + ED+T ++     + +  D+                   +  S +   W
Sbjct: 89  FSGDLLFYRITREDETKKVIFEKLDLLDSDM-------------------KKHSFWALKW 129

Query: 128 FPHMSASDPTSCVFASTTRDHPIHLWDATTG-------------LLRCTYRAYDAVDEIT 174
               S     S    +T      ++W                   L         +    
Sbjct: 130 GA--SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 187

Query: 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVH--RPGRDFEKYSTLKGNKEGQAGIMSAIAFSP 232
            A SV  +  G       N +V++ ++   RP  +FE   ++  N    +  + ++ FSP
Sbjct: 188 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINN----SNSIRSVKFSP 243

Query: 233 THTGMLAIGSYSQTSAIYR----------------EDNMELLYVLHGQEGGVTHVQFSRD 276
             + +LAI   S +                       + +           V  + F+  
Sbjct: 244 QGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 302

Query: 277 GNYLYTGGRKDPYILCWDLR 296
           G  L + G  D  +  WD++
Sbjct: 303 GETLCSAGW-DGKLRFWDVK 321

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 64.8 bits (158), Expect = 5e-12
 Identities = 31/256 (12%), Positives = 64/256 (25%), Gaps = 40/256 (15%)

Query: 68  WSPDGSSFLTSSEDKTLRI--------FSLPENGISYDVNACSLAKDQDSYEASLVVTEG 119
                   ++ S D  L++         +  +   S+ V+   L              E 
Sbjct: 24  ACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 81

Query: 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSV 179
             V         ++       +  T  D    +      LL    + +     +    S 
Sbjct: 82  CLV---AT----TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA-LKWGASN 133

Query: 180 AFNPTGTKIFAGYNKSVRVFDVHRPG-----------RDFEKYSTLKGNKEGQAGIMSAI 228
               +   +      +  ++  H                 E   T++          S +
Sbjct: 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS-V 192

Query: 229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYV------LHGQEGGVTHVQFSRDGNYLYT 282
             S    G++A G  + T  I     +  LY       +      +  V+FS  G+ L  
Sbjct: 193 DISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 250

Query: 283 GG--RKDPYILCWDLR 296
                    I  ++  
Sbjct: 251 AHDSNSFGCITLYETE 266

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 29/258 (11%), Positives = 74/258 (28%), Gaps = 43/258 (16%)

Query: 66  IKWSPD-----GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
           +KW            + +    T  I         +  +  +   +  +   S  +    
Sbjct: 127 LKWGASNDRLLSHRLVATDVKGTTYI---------WKFHPFADESNSLTLNWSPTLELQG 177

Query: 121 SVYDFCWFPHMSASDPTSCV-------FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173
           +V        M+ S   + V        A+   +  + + + +T      + +  ++   
Sbjct: 178 TVE-----SPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINN 232

Query: 174 TAA-FSVAFNPTGTKIFAG----YNKSVRVFDVH--RPGRDFEKYSTLKGNKEGQAG--- 223
           + +  SV F+P G+ +           + +++             +       G+     
Sbjct: 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS 292

Query: 224 -IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH----VQFSRDGN 278
            +MS ++F+ +    L    +      +     E +  L+     +      +     G+
Sbjct: 293 WVMS-LSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 350

Query: 279 YLYTGGRKDPYILCWDLR 296
            L   G  D   L    R
Sbjct: 351 SLAEPGVFDVKFLKKGWR 368

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 24/193 (12%), Positives = 50/193 (25%), Gaps = 44/193 (22%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLA---KDQDSYEASLVVTEG--E 120
           +K+SP GS    + +  +    +L      Y+                  + +       
Sbjct: 239 VKFSPQGSLLAIAHDSNSFGCITL------YETEFGERIGSLSVPTHSSQASLGEFAHSS 292

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSV 179
            V    +       + +     S   D  +  WD  T     T   + D ++       +
Sbjct: 293 WVMSLSF-------NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI--EEDIL 343

Query: 180 AFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239
           A +  G  +         VFDV    +                    +   +  +   L 
Sbjct: 344 AVDEHGDSL-----AEPGVFDVKFLKK-----------------GWRSGMGADLNES-LC 380

Query: 240 IGSYSQTSAIYRE 252
                ++   +RE
Sbjct: 381 CVCLDRSIRWFRE 393

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 35/248 (14%), Positives = 73/248 (29%), Gaps = 49/248 (19%)

Query: 65  GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESV 122
           G+ W+PD +  +T   D+   +         + +        +       +V      + 
Sbjct: 57  GVDWAPDSNRIVTCGTDRNAYV---------WTL--------KGRTWKPTLVILRINRAA 99

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA-----YDAVDEITAAF 177
               W    +   P    FA  +    I +            +         V       
Sbjct: 100 RCVRW----A---PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV------L 146

Query: 178 SVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK----------EGQAGIMS 226
           S+ ++P    + AG  +   R+F  +    +     T  G+K              G + 
Sbjct: 147 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH 206

Query: 227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286
            + FS   +  +A  S+  T  +   D    +  L  +   +  V F  + + +  G   
Sbjct: 207 GVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDC 265

Query: 287 DPYILCWD 294
            P +  +D
Sbjct: 266 FPVLFTYD 273

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 70.7 bits (174), Expect = 5e-14
 Identities = 37/246 (15%), Positives = 66/246 (26%), Gaps = 37/246 (15%)

Query: 63  LKGIK-------WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV 115
            K I+       W P+       S D   RIFS     +                E    
Sbjct: 138 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE 197

Query: 116 VTEGES-VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA-YDAVDEI 173
            +     V+  C+              A  + D  + L DA   +   T  +    +   
Sbjct: 198 SSSSCGWVHGVCF-------SANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL--- 247

Query: 174 TAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233
               +V F    + + AG++    +F            +  K +  G+  +    +    
Sbjct: 248 ---LAVTFITESSLVAAGHDCFPVLFTY--------DSAAGKLSFGGRLDVPKQSSQRGL 296

Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY----LYTGGRKDPY 289
                      + S+         L  LH  +  V+ +     G        T G  D  
Sbjct: 297 TARERFQNLDKKASSEGSAAAGAGLDSLH--KNSVSQISVLSGGKAKCSQFCTTGM-DGG 353

Query: 290 ILCWDL 295
           +  WD+
Sbjct: 354 MSIWDV 359

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 29/242 (11%), Positives = 62/242 (25%), Gaps = 59/242 (24%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EG--ESVYD 124
           W+ D +       +  + I         Y+             +   V   +     V  
Sbjct: 16  WNKDRTQIAICPNNHEVHI---------YEK---------SGNKWVQVHELKEHNGQVTG 57

Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFN 182
             W P        S    +   D   ++W       +        +      AA  V + 
Sbjct: 58  VDWAPD-------SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR-----AARCVRWA 105

Query: 183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP--------- 232
           P   K   G  ++ + +    +    +      K  +     ++S + + P         
Sbjct: 106 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS---TVLS-LDWHPNSVLLAAGS 161

Query: 233 ---------THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG 283
                     +   +     + T    +    EL++      G V  V FS +G+ +   
Sbjct: 162 CDFKCRIFSAYIKEV-EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 220

Query: 284 GR 285
             
Sbjct: 221 SH 222

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 26/245 (10%), Positives = 68/245 (27%), Gaps = 48/245 (19%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVY 123
           ++W+P+   F   S  + + I              C   ++ D +     + +    +V 
Sbjct: 102 VRWAPNEKKFAVGSGSRVISI--------------CYFEQENDWW-VCKHIKKPIRSTVL 146

Query: 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEIT--------- 174
              W        P S + A+ + D    ++ A    +           ++          
Sbjct: 147 SLDW----H---PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199

Query: 175 ----AAFSVAFNPTGTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229
                   V F+  G+++ +  ++ +V + D  +        +TL         +++ + 
Sbjct: 200 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK----MAVATLASE---TLPLLA-VT 251

Query: 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289
           F    + ++A G       ++  D+        G+                         
Sbjct: 252 FITESS-LVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 309

Query: 290 ILCWD 294
                
Sbjct: 310 SSEGS 314

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 20/160 (12%)

Query: 142 ASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRV 198
           A    +H +H+++ +          + ++   ++T    V + P   +I   G +++  V
Sbjct: 24  AICPNNHEVHIYEKSGNKWVQVHELKEHN--GQVT---GVDWAPDSNRIVTCGTDRNAYV 78

Query: 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAI----YREDN 254
           + +   GR ++    +             + ++P      A+GS S+  +I       D 
Sbjct: 79  WTLK--GRTWKPTLVILRI---NRAARC-VRWAPNEK-KFAVGSGSRVISICYFEQENDW 131

Query: 255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294
               ++       V  + +  +   L  G   D     + 
Sbjct: 132 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC-DFKCRIFS 170

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 58.4 bits (142), Expect = 7e-10
 Identities = 13/111 (11%), Positives = 36/111 (32%), Gaps = 10/111 (9%)

Query: 178 SVAFNPTGTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG 236
             A+N   T+I     N  V +++    G  + +   LK +      +   + ++P  + 
Sbjct: 13  CHAWNKDRTQIAICPNNHEVHIYEKS--GNKWVQVHELKEH---NGQVTG-VDWAP-DSN 65

Query: 237 MLAIGSYSQTSAIYREDNMEL--LYVLHGQEGGVTHVQFSRDGNYLYTGGR 285
            +      + + ++           V+         V+++ +      G  
Sbjct: 66  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG 116

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 72.1 bits (176), Expect = 2e-14
 Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 35/236 (14%)

Query: 69  SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128
             D    +   ED  L    L +            +K   +       T GE        
Sbjct: 45  YYDKWVCMCRCEDGALHFTQLKD------------SKTITTITTPNPRTGGEHPA----- 87

Query: 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188
                S             + I + D+ T  +       D+ +EI   +      T   I
Sbjct: 88  ---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV-DSANEIIYMYGHNEVNTEYFI 143

Query: 189 FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTS 247
           +A    ++            E  S    +        S+          +LA+ S     
Sbjct: 144 WADNRGTIGFQSY-------EDDSQYIVHSAKSDVEYSSGVLHKD--SLLLALYSPDGIL 194

Query: 248 AIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301
            +Y   + +         +E  +  V+F+ +G ++      D  ++C+DLRK V  
Sbjct: 195 DVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVGT 248

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 64.4 bits (156), Expect = 6e-12
 Identities = 25/186 (13%), Positives = 57/186 (30%), Gaps = 29/186 (15%)

Query: 69  SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128
             +   F+ +    T+   S                      ++  +V   +S  ++   
Sbjct: 136 EVNTEYFIWADNRGTIGFQSY-------------------EDDSQYIVHSAKSDVEYSSG 176

Query: 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188
                    S + A  + D  + +++ ++     +    D   +I     V F   G  +
Sbjct: 177 ----VLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIK---EVKFADNGYWM 229

Query: 189 FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSA 248
               +++V  FD+ R       Y T    +     +        +   M+A  + S +  
Sbjct: 230 VVECDQTVVCFDL-RKDVGTLAYPTYTIPEFKTGTV--TYDIDDSGKNMIAYSNESNSLT 286

Query: 249 IYREDN 254
           IY+ D 
Sbjct: 287 IYKFDK 292

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 22/190 (11%), Positives = 51/190 (26%), Gaps = 31/190 (16%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
                D       S D  L +++L                  D   +   V E   + + 
Sbjct: 176 GVLHKDSLLLALYSPDGILDVYNL---------------SSPDQASSRFPVDEEAKIKEV 220

Query: 126 CWFP---HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
            +      M               D  +  +D    +    Y  Y   +  T   +   +
Sbjct: 221 KFADNGYWMVVEC-----------DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID 269

Query: 183 PTGTKIFAGY--NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
            +G  + A    + S+ ++   +  +++ K        +      + +       G+ AI
Sbjct: 270 DSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAI 329

Query: 241 GSYSQTSAIY 250
              + +  I 
Sbjct: 330 LKTNDSFNIV 339

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 46/271 (16%), Positives = 79/271 (29%), Gaps = 68/271 (25%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPEN---------GISYDVNACSLAKDQD-------SY- 110
               G    T S DKT++IF +            G    V     A  +        SY 
Sbjct: 19  LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78

Query: 111 -----------EASLVVT-EG--ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT 156
                        S +        SV    W P          +    + D  + + +  
Sbjct: 79  GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-----HEYGPLLLVASSDGKVSVVEFK 133

Query: 157 TG--LLRCTYRAYDAVDEITAAFSVAFNPTGT------------KIFA--GYNKSVRVFD 200
                      A+          S ++ P               + F   G +  V+++ 
Sbjct: 134 ENGTTSPIIIDAHAI-----GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 188

Query: 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG--MLAIGSYSQTSAIYREDN---- 254
            +   + +   STL+G+ +    +   +A+SPT      LA  S  +T  I+ +DN    
Sbjct: 189 YNSDAQTYVLESTLEGHSD---WVRD-VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 244

Query: 255 -MELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284
             + L         +    +S  GN L   G
Sbjct: 245 WKKTLLKEEKFPDVLWRASWSLSGNVLALSG 275

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 28/220 (12%), Positives = 62/220 (28%), Gaps = 42/220 (19%)

Query: 67  KWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYD 124
             + +   F+T   D  ++I+    +  +Y +            E++L   EG  + V D
Sbjct: 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVL------------ESTL---EGHSDWVRD 211

Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT 184
             W    S +       AS ++D    +W                       +  +++ +
Sbjct: 212 VAW----SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS 267

Query: 185 GTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
           G  +  +G +  V ++                 N EG+      +      +     G  
Sbjct: 268 GNVLALSGGDNKVTLWKE---------------NLEGKWEPAGEVHQGGGGS-----GGG 307

Query: 244 SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG 283
             TS  +       + +L  +                +T 
Sbjct: 308 GATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTA 347

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 13/125 (10%)

Query: 178 SVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG 236
               +  G ++     +K++++F+V   G   +   TL G+   +  +   + ++    G
Sbjct: 16  DAVLDYYGKRLATCSSDKTIKIFEVE--GETHKLIDTLTGH---EGPVWR-VDWAHPKFG 69

Query: 237 -MLAIGSYSQTSAIYREDN--MELLYVLHGQEGGVTHVQFSRD--GNYLYTGGRKDPYIL 291
            +LA  SY     I++E+N     + V       V  VQ++    G  L      D  + 
Sbjct: 70  TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS-DGKVS 128

Query: 292 CWDLR 296
             + +
Sbjct: 129 VVEFK 133

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 71.1 bits (175), Expect = 3e-14
 Identities = 49/247 (19%), Positives = 90/247 (36%), Gaps = 44/247 (17%)

Query: 62  FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG-- 119
                K + D    ++ S DKT+ I         + +              +L    G  
Sbjct: 29  AGFSQKENEDSPVLISGSRDKTVMI---------WKLYEEEQNGYFGIPHKAL---TGHN 76

Query: 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFS 178
             V D          +  +C   S++ D  + LWD  TG     +  +   V      +S
Sbjct: 77  HFVSDLALSQ-----E--NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEV------YS 123

Query: 179 VAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM 237
           VAF+P   +I  AG  + ++++++   G      +  + + +     +S + +SP     
Sbjct: 124 VAFSPDNRQILSAGAEREIKLWNIL--GECKFSSAEKENHSDW----VSCVRYSPIMKSA 177

Query: 238 LAIGSYSQTSAIYREDNM--------ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289
             +  ++   A    D          ++ Y     E  V H+  S +G Y+ TGG KD  
Sbjct: 178 NKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGG-KDKK 236

Query: 290 ILCWDLR 296
           +L WD+ 
Sbjct: 237 LLIWDIL 243

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 35/246 (14%), Positives = 83/246 (33%), Gaps = 51/246 (20%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDF 125
           +SPD    L++  ++ +++         +++            + S    E   + V   
Sbjct: 126 FSPDNRQILSAGAEREIKL---------WNI--------LGECKFSSAEKENHSDWVSCV 168

Query: 126 CWFP---HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
            + P     +   P +  FAS   D  + +W+    +   T++A++    +     ++ +
Sbjct: 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRY-TFKAHE--SNVN---HLSIS 222

Query: 183 PTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
           P G  I   G +K + ++D+     +                 ++ IAF+P     +A+G
Sbjct: 223 PNGKYIATGGKDKKLLIWDIL----NLTYPQREFDAG----STINQIAFNPKLQ-WVAVG 273

Query: 242 S------------YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289
           +                      + +       G+    T + ++  G  L+ G   D  
Sbjct: 274 TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT-DGV 332

Query: 290 ILCWDL 295
           I  +  
Sbjct: 333 IRTFSF 338

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 36/249 (14%), Positives = 78/249 (31%), Gaps = 70/249 (28%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSL-------PENGISYDVNACSLAKDQDSYEASLVVTEGE 120
            S +    ++SS DKTLR++ L          G   +V + + + D        ++    
Sbjct: 84  LSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD-----NRQIL---- 134

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY---DAVDEITAAF 177
                      SA             +  I LW+        +       D V       
Sbjct: 135 -----------SAG-----------AEREIKLWNILGECKFSSAEKENHSDWV------S 166

Query: 178 SVAFNPTGTKIF-----------AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS 226
            V ++P                  G++  ++V++      +F+   T K ++      ++
Sbjct: 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-----NFQIRYTFKAHE----SNVN 217

Query: 227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286
            ++ SP     +A G   +   I+   N+            +  + F+    ++  G   
Sbjct: 218 HLSISPNGK-YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-- 274

Query: 287 DPYILCWDL 295
           D  +  ++L
Sbjct: 275 DQGVKIFNL 283

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 10/143 (6%)

Query: 146 RDHPIHLWDATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHR 203
            +  + +     G+L   +    D V  I A FS   N     +     +K+V ++ ++ 
Sbjct: 3   DNSSLDIQVVKRGILEGHS----DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYE 58

Query: 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSAIYREDNMELLYVLH 262
                  +        G    +S +A S           S+ +T  ++            
Sbjct: 59  -EEQNGYFGIPHKALTGHNHFVSDLALSQ--ENCFAISSSWDKTLRLWDLRTGTTYKRFV 115

Query: 263 GQEGGVTHVQFSRDGNYLYTGGR 285
           G +  V  V FS D   + + G 
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGA 138

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 23/178 (12%), Positives = 52/178 (29%), Gaps = 21/178 (11%)

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV-----DEITA 175
            V           +   S V  S +RD  + +W          +             ++ 
Sbjct: 23  WVTSIVAGFSQKEN-EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS- 80

Query: 176 AFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH 234
              +A +        + ++K++R++D+         Y    G++     + S +AFSP +
Sbjct: 81  --DLALSQENCFAISSSWDKTLRLWDLRTG----TTYKRFVGHQS---EVYS-VAFSPDN 130

Query: 235 TGMLAIGSYSQTSAI--YREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290
              +      +   +     +              V+ V++S             PY 
Sbjct: 131 R-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYF 187

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 22/150 (14%), Positives = 40/150 (26%), Gaps = 46/150 (30%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDF 125
            SP+G    T  +DK L I+ +  N                              ++   
Sbjct: 221 ISPNGKYIATGGKDKKLLIWDI-LNL------------------TYPQREFDAGSTINQI 261

Query: 126 CWFP---HM-SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAF---- 177
            + P    +   +D              + +++  T                        
Sbjct: 262 AFNPKLQWVAVGTDQG------------VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN 309

Query: 178 ----SVAFNPTGTKIFAGYN-KSVRVFDVH 202
               S+A+N  G K+FAG+    +R F   
Sbjct: 310 PQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 33/257 (12%), Positives = 74/257 (28%), Gaps = 61/257 (23%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EG--ESVYD 124
               G+   T S D++++IF                  D  +    L+    G    V+ 
Sbjct: 21  MDYYGTRLATCSSDRSVKIF------------------DVRNGGQILIADLRGHEGPVWQ 62

Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP- 183
             W            + AS + D  + +W    G    ++        +    SV + P 
Sbjct: 63  VAWAH-----PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN---SVCWAPH 114

Query: 184 -TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP--------- 232
             G  +  G  + ++ +         +E       +  G     +A++++P         
Sbjct: 115 DYGLILACGSSDGAISLLTYT-GEGQWEVKKINNAHTIG----CNAVSWAPAVVPGSLID 169

Query: 233 -------THTGMLAIGSYSQTSAIYREDN---MELLYVLHGQEGGVTHVQFS----RDGN 278
                   +    A G       +++E+     +    L      V  V ++       +
Sbjct: 170 HPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229

Query: 279 YLYTGGRKDPYILCWDL 295
            + +   +D  +  W  
Sbjct: 230 TIASCS-QDGRVFIWTC 245

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 39/246 (15%), Positives = 75/246 (30%), Gaps = 58/246 (23%)

Query: 68  WSPD--GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVY 123
           W+    G+   + S D+ + I         +          ++          G   SV 
Sbjct: 65  WAHPMYGNILASCSYDRKVII---------WRE--------ENGTWEKSHEHAGHDSSVN 107

Query: 124 DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP 183
             CW P          + A  + D  I L   T        +  +A        +V++ P
Sbjct: 108 SVCWAP-----HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI--GCNAVSWAP 160

Query: 184 TGT----------------KIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIM 225
                              K FA  G +  ++++        +++   L+ + +    + 
Sbjct: 161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE-EDGQWKEEQKLEAHSDW---VR 216

Query: 226 SAIAFSPTHTG---MLAIGSYSQTSAIYREDNME----LLYVLHGQEGGVTHVQFSRDGN 278
             +A++P+       +A  S      I+  D+         +LH     V HV +S   N
Sbjct: 217 D-VAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN 275

Query: 279 YLYTGG 284
            L   G
Sbjct: 276 ILAVSG 281

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 34/232 (14%), Positives = 59/232 (25%), Gaps = 46/232 (19%)

Query: 66  IKWSPD--GSSFLTSSEDKTLRIFSL----------PENGISYDVNACSLAKDQDSYEAS 113
           + W+P   G      S D  + + +             N  +   NA S A         
Sbjct: 109 VCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA------- 161

Query: 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG---LLRCTYRAY-DA 169
                   V                  FAS   D+ I LW               A+ D 
Sbjct: 162 -------VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW 214

Query: 170 VDEITAAFSVAFNPTGTKIF-----AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224
           V        VA+ P+             +  V ++       +      L         +
Sbjct: 215 V------RDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFN----DV 264

Query: 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD 276
           +  +++S T   +LA+        +++E        +     G   V  S  
Sbjct: 265 VWHVSWSITAN-ILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSASVT 315

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 13/124 (10%)

Query: 178 SVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG 236
               +  GT++     ++SV++FDV   G+       L+G+   +  +   +A++    G
Sbjct: 18  DAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIA--DLRGH---EGPVWQ-VAWAHPMYG 71

Query: 237 -MLAIGSYSQTSAIYREDN--MELLYVLHGQEGGVTHVQFSRD--GNYLYTGGRKDPYIL 291
            +LA  SY +   I+RE+N   E  +   G +  V  V ++    G  L  G   D  I 
Sbjct: 72  NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS-DGAIS 130

Query: 292 CWDL 295
               
Sbjct: 131 LLTY 134

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 70.0 bits (172), Expect = 6e-14
 Identities = 44/273 (16%), Positives = 78/273 (28%), Gaps = 68/273 (24%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPEN---------GISYDVNACSLAKDQD-------S 109
                 G    T S DKT++IF +            G    V     A  +        S
Sbjct: 15  AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 74

Query: 110 Y------------EASLVVT-EG--ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWD 154
           Y              S +        SV    W P          +    + D  + + +
Sbjct: 75  YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-----HEYGPMLLVASSDGKVSVVE 129

Query: 155 ATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--------------AGYNKSVRV 198
                        A+          S ++ P   +                 G +  V++
Sbjct: 130 FKENGTTSPIIIDAHAI-----GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184

Query: 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG--MLAIGSYSQTSAIYREDN-- 254
           +  +   + +   STL+G+ +    +   +A+SPT      +A  S  +T  I+ +DN  
Sbjct: 185 WKYNSDAQTYVLESTLEGHSD---WVRD-VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240

Query: 255 ---MELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284
               + L         +    +S  GN L   G
Sbjct: 241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 13/125 (10%)

Query: 178 SVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG 236
               +  G ++     +K++++F+V   G   +   TL G+   +  +   + ++    G
Sbjct: 14  DAVMDYYGKRMATCSSDKTIKIFEVE--GETHKLIDTLTGH---EGPVWR-VDWAHPKFG 67

Query: 237 -MLAIGSYSQTSAIYREDN--MELLYVLHGQEGGVTHVQFSRD--GNYLYTGGRKDPYIL 291
            +LA  SY     I++E+N     + V       V  VQ++    G  L      D  + 
Sbjct: 68  TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS-DGKVS 126

Query: 292 CWDLR 296
             + +
Sbjct: 127 VVEFK 131

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 22/141 (15%)

Query: 69  SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDFC 126
           + +   F+T   D  ++I+    +  +Y +            E++L   EG  + V D  
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVL------------ESTL---EGHSDWVRDVA 211

Query: 127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT 186
           W    S +       AS ++D    +W                       +  +++ +G 
Sbjct: 212 W----SPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN 267

Query: 187 KI-FAGYNKSVRVFDVHRPGR 206
            +  +G +  V ++  +  G+
Sbjct: 268 VLALSGGDNKVTLWKENLEGK 288

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 69.8 bits (172), Expect = 8e-14
 Identities = 49/243 (20%), Positives = 89/243 (36%), Gaps = 53/243 (21%)

Query: 66  IKWSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124
           I  +P     + S S DKT+ ++ L  +  +Y +   +L               G     
Sbjct: 44  IATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL--------------RG----- 84

Query: 125 FCWFPHMSASDP-TSCVF-------ASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITA 175
                H   S   +  V         S + D  + LWD TTG     +  +   V     
Sbjct: 85  -----H---SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDV----- 131

Query: 176 AFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP-T 233
             SVAF+    +I     +K++++++     +        + + E     +S + FSP +
Sbjct: 132 -LSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK---YTVQDESHSEW----VSCVRFSPNS 183

Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293
              ++    + +   ++   N +L     G  G +  V  S DG+   +GG KD   + W
Sbjct: 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLW 242

Query: 294 DLR 296
           DL 
Sbjct: 243 DLN 245

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 64.1 bits (157), Expect = 7e-12
 Identities = 40/240 (16%), Positives = 82/240 (34%), Gaps = 52/240 (21%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDF 125
           +S D    ++ S DKT++++                  +        V  E   E V   
Sbjct: 136 FSSDNRQIVSGSRDKTIKLW------------------NTLGVCKYTVQDESHSEWVSCV 177

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPT 184
            + P     + ++ +  S   D  + +W+     L+  +  +   +       +V  +P 
Sbjct: 178 RFSP-----NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYL------NTVTVSPD 226

Query: 185 GTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
           G+     G +    ++D++      +   TL G       I++A+ FSP     L   + 
Sbjct: 227 GSLCASGGKDGQAMLWDLNEG----KHLYTLDGG-----DIINALCFSPNRY-WLCAATG 276

Query: 244 S-------QTSAIYREDNMELLYV-LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
                   +   I  E   E++      +    T + +S DG  L+ G   D  +  W +
Sbjct: 277 PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT-DNLVRVWQV 335

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 17/152 (11%)

Query: 141 FASTTRDHPIHLWDAT----TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA--GYNK 194
            +S       +L+  +       LR T + ++    +T    +A  P    +      +K
Sbjct: 7   HSSGVDLGTENLYFQSMMTEQMTLRGTLKGHN--GWVT---QIATTPQFPDMILSASRDK 61

Query: 195 SVRVFDVHRPGRDFEK-YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253
           ++ ++ + R   ++      L+G+       +S +  S         GS+  T  ++   
Sbjct: 62  TIIMWKLTRDETNYGIPQRALRGHS----HFVSDVVISSDGQ-FALSGSWDGTLRLWDLT 116

Query: 254 NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR 285
                    G    V  V FS D   + +G R
Sbjct: 117 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 43/146 (29%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EG-ESVYDF 125
            SPDGS   +  +D    +         +D+N           E   + T +G + +   
Sbjct: 223 VSPDGSLCASGGKDGQAML---------WDLN-----------EGKHLYTLDGGDIINAL 262

Query: 126 CWFP--HM--SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITA----AF 177
           C+ P  +   +A+ P+            I +WD    ++    +         A      
Sbjct: 263 CFSPNRYWLCAATGPS------------IKIWDLEGKIIVDELKQEVISTSSKAEPPQCT 310

Query: 178 SVAFNPTGTKIFAGYN-KSVRVFDVH 202
           S+A++  G  +FAGY    VRV+ V 
Sbjct: 311 SLAWSADGQTLFAGYTDNLVRVWQVT 336

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 37/241 (15%), Positives = 76/241 (31%), Gaps = 55/241 (22%)

Query: 70  PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDFCW 127
                  +  +  T  ++              S+  +Q +   +L   +G    V     
Sbjct: 2   HHHHHHSSGVDLGTENLYFQ------------SMMTEQMTLRGTL---KGHNGWVTQIAT 46

Query: 128 FPHMSASDPTSCVFASTTRDHPIHLWDATT-----GLLRCTYRAY-DAVDEITAAFSVAF 181
            P          +  S +RD  I +W  T      G+ +   R +   V        V  
Sbjct: 47  TP-----QFPDMI-LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV------SDVVI 94

Query: 182 NPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
           +  G       ++ ++R++D+              G+      ++S +AFS  +   +  
Sbjct: 95  SSDGQFALSGSWDGTLRLWDLTTG----TTTRRFVGH---TKDVLS-VAFSSDNR-QIVS 145

Query: 241 GSYSQTSAIYR----EDNMELLYVLHGQEGGVTHVQFSRDG--NYLYTGGRKDPYILCWD 294
           GS  +T  I +        +           V+ V+FS +     + + G  D  +  W+
Sbjct: 146 GSRDKT--I-KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW-DKLVKVWN 201

Query: 295 L 295
           L
Sbjct: 202 L 202

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 69.9 bits (172), Expect = 8e-14
 Identities = 52/253 (20%), Positives = 93/253 (36%), Gaps = 67/253 (26%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EG--ESVYD 124
           +SPDG    T +ED+ +RI+ + EN                     +V+  +G  + +Y 
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDI-ENR-------------------KIVMILQGHEQDIY- 169

Query: 125 FCWFPHMSASDPTSCVF-------ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAF 177
                        S  +        S + D  + +WD  TG    T    D V       
Sbjct: 170 -------------SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV------T 210

Query: 178 SVAFNPT-GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235
           +VA +P  G  I AG  +++VRV+D    G   E+  +   +  G    + ++ F+    
Sbjct: 211 TVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDGQ 269

Query: 236 GMLAIGSYSQT------------SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG 283
             +  GS  ++            S     ++        G +  V  V  +++  Y+ +G
Sbjct: 270 -SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 328

Query: 284 GRKDPYILCWDLR 296
             KD  +L WD +
Sbjct: 329 S-KDRGVLFWDKK 340

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 41/236 (17%), Positives = 77/236 (32%), Gaps = 48/236 (20%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGES-VYDFC 126
           + P G   ++ S D+T+RI+ L   G                     +    E  V    
Sbjct: 173 YFPSGDKLVSGSGDRTVRIWDL-RTG------------------QCSLTLSIEDGVTTVA 213

Query: 127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV-----DEITAAFSVAF 181
             P     D       S   D  + +WD+ TG L     + +       D +    SV F
Sbjct: 214 VSPG----DGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVY---SVVF 264

Query: 182 NPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK----EGQAGIMSAIAFSPTHTG 236
              G  + +G  ++SV+++++       +  +   G       G    + ++A +     
Sbjct: 265 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN--D 322

Query: 237 -MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR------DGNYLYTGGR 285
             +  GS  +    + + +   L +L G    V  V  +       + N   TG  
Sbjct: 323 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 43/254 (16%), Positives = 79/254 (31%), Gaps = 60/254 (23%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVY 123
                D  S   + + +T            Y +   +L ++ D     L  +      V 
Sbjct: 21  FLLDLDSQSVPDALKKQTNDY---------YILYNPALPREID---VELHKSLDHTSVVC 68

Query: 124 DFCWFPH----MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAF-- 177
              +        +  + T              ++  + G L        A ++       
Sbjct: 69  CVKFSNDGEYLATGCNKT------------TQVYRVSDGSLVARLSDDSAANKDPENLNT 116

Query: 178 -----------SVAFNPTGTKIF-AGYNKSVRVFDVH--RPGRDFEKYSTLKGNKEGQAG 223
                      SV F+P G  +     ++ +R++D+   +          L+G+   +  
Sbjct: 117 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM------ILQGH---EQD 167

Query: 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS-RDGNYLYT 282
           I S + + P+    L  GS  +T  I+     +    L   E GVT V  S  DG Y+  
Sbjct: 168 IYS-LDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSI-EDGVTTVAVSPGDGKYIAA 224

Query: 283 GGRKDPYILCWDLR 296
           G   D  +  WD  
Sbjct: 225 GSL-DRAVRVWDSE 237

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 42/154 (27%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV-NACSLAKDQDSYEASLVVT-EG--ES 121
           + ++ DG S ++ S D+++++         +++ NA + +  +     +  VT  G  + 
Sbjct: 262 VVFTRDGQSVVSGSLDRSVKL---------WNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312

Query: 122 VYDFCWFPH----MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAA 176
           V       +    +S S            D  +  WD  +G      + + ++V      
Sbjct: 313 VLSVATTQNDEYILSGSK-----------DRGVLFWDKKSGNPLLMLQGHRNSV------ 355

Query: 177 FSVAF------NPTGTKIF-AGYNKSVRVFDVHR 203
            SVA        P          +   R++   +
Sbjct: 356 ISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 69.4 bits (171), Expect = 1e-13
 Identities = 48/242 (19%), Positives = 80/242 (33%), Gaps = 60/242 (24%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EG--ESV 122
            K  PDG + +   E  TL I+                  D  +    +         + 
Sbjct: 103 CKLLPDGCTLIVGGEASTLSIW------------------DLAAPTPRIKAELTSSAPAC 144

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
           Y     P     D   C       D  I +WD     L   ++ +   D  +    +  +
Sbjct: 145 YALAISP-----DSKVCFSCC--SDGNIAVWDLHNQTLVRQFQGHT--DGAS---CIDIS 192

Query: 183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
             GTK++ G  + +VR +D+   GR            +  + I S + + PT    LA+G
Sbjct: 193 NDGTKLWTGGLDNTVRSWDLRE-GR-------QLQQHDFTSQIFS-LGYCPTGE-WLAVG 242

Query: 242 SYSQTSAIYREDNMEL-------LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294
             S          +E+        Y LH  E  V  ++F+  G +  + G KD  +  W 
Sbjct: 243 MESSN--------VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWR 293

Query: 295 LR 296
             
Sbjct: 294 TP 295

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 69.1 bits (170), Expect = 1e-13
 Identities = 38/240 (15%), Positives = 69/240 (28%), Gaps = 50/240 (20%)

Query: 66  IKWSPDGSSFLTS-SEDKTLRIFSLPENGI-------SYDVNACSLAKDQDSYEASLVVT 117
              + DG         D  +     P +            V A +++             
Sbjct: 15  FHVTADGQMQPVPFPPDALIGPGI-PRHARQINTLNHGEVVCAVTISNP----------- 62

Query: 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAF 177
               VY        +                 + +WD +    +      D ++      
Sbjct: 63  -TRHVY--------TGGKGC------------VKVWDISHPGNKSPVSQLDCLNRDNYIR 101

Query: 178 SVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG 236
           S    P G  +   G   ++ ++D+  P       + L  +        + +A SP    
Sbjct: 102 SCKLLPDGCTLIVGGEASTLSIWDLAAPTP--RIKAELTSS---APACYA-LAISPDSK- 154

Query: 237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
           +          A++   N  L+    G   G + +  S DG  L+TGG  D  +  WDLR
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL-DNTVRSWDLR 213

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 41/239 (17%), Positives = 75/239 (31%), Gaps = 63/239 (26%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EGESVYDFC 126
            SPD     +   D  + ++ L  N                    +LV   +G       
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDL-HNQ-------------------TLVRQFQG------- 181

Query: 127 WFPHMSASDPTSCV-F-------ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS 178
              H   +D  SC+          +   D+ +  WD   G     +     +      FS
Sbjct: 182 ---H---TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI------FS 229

Query: 179 VAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG- 236
           + + PTG  +  G  + +V V  V++P    +KY  L  ++     ++S + F+    G 
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKP----DKY-QLHLHESC---VLS-LKFAYC--GK 278

Query: 237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
                        +R      +     +   V     S D  Y+ TG   D     +++
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSG-DKKATVYEV 335

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 70.4 bits (172), Expect = 1e-13
 Identities = 45/273 (16%), Positives = 78/273 (28%), Gaps = 68/273 (24%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPEN---------GISYDVNACSLAKDQD-------S 109
                 G    T S DKT++IF +            G    V     A  +        S
Sbjct: 15  AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 74

Query: 110 Y------------EASLVVT-EG--ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWD 154
           Y              S +        SV    W P          +    + D  + + +
Sbjct: 75  YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-----HEYGPLLLVASSDGKVSVVE 129

Query: 155 ATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--------------AGYNKSVRV 198
                        A+          S ++ P   +                 G +  V++
Sbjct: 130 FKENGTTSPIIIDAHAI-----GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184

Query: 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG--MLAIGSYSQTSAIYREDN-- 254
           +  +   + +   STL+G+ +    +   +A+SPT      LA  S  +T  I+ +DN  
Sbjct: 185 WKYNSDAQTYVLESTLEGHSD---WVRD-VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240

Query: 255 ---MELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284
               + L         +    +S  GN L   G
Sbjct: 241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 13/125 (10%)

Query: 178 SVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS-AIAFSPTHT 235
               +  G ++     +K++++F+V   G   +   TL G+   +  +     A     T
Sbjct: 14  DAVLDYYGKRLATCSSDKTIKIFEVE--GETHKLIDTLTGH---EGPVWRVDWAHPKFGT 68

Query: 236 GMLAIGSYSQTSAIYREDN--MELLYVLHGQEGGVTHVQFS--RDGNYLYTGGRKDPYIL 291
            +LA  SY     I++E+N     + V       V  VQ++    G  L      D  + 
Sbjct: 69  -ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS-DGKVS 126

Query: 292 CWDLR 296
             + +
Sbjct: 127 VVEFK 131

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 27/224 (12%), Positives = 53/224 (23%), Gaps = 32/224 (14%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           IK  P  S  L +S D +L +         Y  +         + +    +     +   
Sbjct: 17  IKIIPSKSLLLITSWDGSLTV---------YKFDI-----QAKNVDLLQSLRYKHPLLCC 62

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
            +       D T       T    I   D             +A                
Sbjct: 63  NF------IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEAN----LGICRICKYGD 112

Query: 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
            K+ A  ++  + V D    G        L  N       +  +  + +    L +G  +
Sbjct: 113 DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS---RLIVGMNN 169

Query: 245 QTSAIYREDNMELLYVLHGQEGGVTHVQ----FSRDGNYLYTGG 284
                +R    E       + G    ++      ++        
Sbjct: 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS 213

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 55.2 bits (133), Expect = 6e-09
 Identities = 15/128 (11%), Positives = 37/128 (28%), Gaps = 11/128 (8%)

Query: 171 DEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229
           D I+    +   P+ + +    ++ S+ V+      ++      L  +   +  ++    
Sbjct: 12  DYIS---DIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----VDLLQSLRYKHPLLC-CN 63

Query: 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR-DGNYLYTGGRKDP 288
           F       + +G+                  L   E  +   +  +   + L      D 
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW-DG 122

Query: 289 YILCWDLR 296
            I   D R
Sbjct: 123 LIEVIDPR 130

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 12/128 (9%), Positives = 31/128 (24%), Gaps = 13/128 (10%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW 127
              +   +  SS D  + +    + G  Y+ +     +                V    +
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD--TNLAYPVNSIEF 259

Query: 128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK 187
                   P      +   D  I  W+  T      +  ++      +   +A +     
Sbjct: 260 -------SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE----DSVVKIACSDNILC 308

Query: 188 IFAGYNKS 195
           +    +  
Sbjct: 309 LATSDDTF 316

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 69.9 bits (170), Expect = 2e-13
 Identities = 25/254 (9%), Positives = 69/254 (27%), Gaps = 56/254 (22%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
             +    +    ++    + I+                   Q   E  + + +  ++ + 
Sbjct: 23  AAFDFTQNLLAIATVTGEVHIY------------------GQQQVEVVIKLEDRSAIKEM 64

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
            +   +                  +++    +  +  T      +       S+  + + 
Sbjct: 65  RFVKGIY--------LVVINAKDTVYVLSLYSQKVLTTVFVPGKI------TSIDTDASL 110

Query: 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE---GQAGIMSAIAFSPTHTGMLAIG 241
             +  G  N S+ V+D+ R      K   L+ +      +   + +I ++P   G + I 
Sbjct: 111 DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS 170

Query: 242 SYSQTSAIYREDNMELLYVL------------------HGQEGGVTHVQFSRDGNYLYTG 283
            Y   +  Y     E+                        +   V    +  +  ++ T 
Sbjct: 171 -YEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI 229

Query: 284 GRKDPYILCWDLRK 297
              D  ++ WD   
Sbjct: 230 HE-DNSLVFWDANS 242

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 47.2 bits (111), Expect = 4e-06
 Identities = 39/268 (14%), Positives = 77/268 (28%), Gaps = 23/268 (8%)

Query: 32  YTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPE 91
             + + R  +   +  +        +   + +  I+W+P     +  S +     +SL E
Sbjct: 123 IVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVE 182

Query: 92  NGI--SYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHP 149
           N I  S+       A   D  E +      + V    +        P S    +   D+ 
Sbjct: 183 NEIKQSFIYELPPFAPGGDFSEKTNEKRTPK-VIQSLY-------HPNSLHIITIHEDNS 234

Query: 150 IHLWDATTGLLRCTYRAYDA-VDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF 208
           +  WDA +G +      ++  ++     +    +    KI          +         
Sbjct: 235 LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKIS------KVYWMCENNPEYT 288

Query: 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV 268
               + K    G    ++ I      T   +I SY      Y       ++ L      V
Sbjct: 289 SLLISHKSISRGDNQSLTMIDLGY--TPRYSITSYEGMKNYYANPKQMKIFPL---PTNV 343

Query: 269 THVQFSRDGNYL-YTGGRKDPYILCWDL 295
             V          Y  G  +P ++   L
Sbjct: 344 PIVNILPIPRQSPYFAGCHNPGLILLIL 371

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 46.8 bits (110), Expect = 6e-06
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV 268
           + +S  + NK G +    A AF  T   +LAI + +    IY +  +E + +       +
Sbjct: 4   KIFSLAETNKYGMSSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQVE-VVIKLEDRSAI 61

Query: 269 THVQFSRDGNYLYTGGRKDPYILCWDLRK 297
             ++F +    +         +    L  
Sbjct: 62  KEMRFVKGIYLVVINA--KDTVYVLSLYS 88

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 44/253 (17%), Positives = 87/253 (34%), Gaps = 45/253 (17%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EG--ESV 122
           + +   G    T S D+ +++F L                D+D+    L  +      S+
Sbjct: 17  VVYDFYGRHVATCSSDQHIKVFKL----------------DKDTSNWELSDSWRAHDSSI 60

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEIT----AAFS 178
               W     AS     + AS + D  + LW+       C+ R ++ +  +     + +S
Sbjct: 61  VAIDW-----ASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS 115

Query: 179 VAFNP--TGTKIF-AGYNKSVRVFDVH-----RPGRDFEKYSTLKGNKEGQAGIMSAIAF 230
           V F P   G K+   G +  +R++D       R      +   L             +++
Sbjct: 116 VKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 175

Query: 231 SP--THTGMLAIGSYSQTSAIYREDN--MELLYVLHGQEGGVTHVQFS----RDGNYLYT 282
            P       LA+ +  Q     R  +  + +   L G +  +  + ++    R    + T
Sbjct: 176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT 235

Query: 283 GGRKDPYILCWDL 295
           G  KD  I  + +
Sbjct: 236 GC-KDGRIRIFKI 247

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 35/233 (15%), Positives = 70/233 (30%), Gaps = 37/233 (15%)

Query: 66  IKWSPD--GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVY 123
           +K++P   G        D  LR++         + +           +   +        
Sbjct: 116 VKFAPAHLGLKLACLGNDGILRLYDAL------EPSDLRSWTLTSEMKVLSIPPANHLQS 169

Query: 124 DFC--WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF 181
           DFC  W P  S   P     A +  +  I       G L    +       I    S+++
Sbjct: 170 DFCLSWCP--SRFSPEK--LAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIR---SISW 222

Query: 182 NPTGTKIF-----AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG 236
            P+  + +        +  +R+F +          +        +  + ++  F  +   
Sbjct: 223 APSIGRWYQLIATGCKDGRIRIFKI----------TEKLSPLASEESLTNSNMFDNSADV 272

Query: 237 -MLAIGSYS----QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG 284
            M A G       + + +     +ELL       G V  V ++  G  L + G
Sbjct: 273 DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAG 325

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 32/245 (13%), Positives = 78/245 (31%), Gaps = 36/245 (14%)

Query: 68  WSPD--GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           W+    G    ++S DKT++++         D +    +  + +   +L  ++G S+Y  
Sbjct: 65  WASPEYGRIIASASYDKTVKLWEE-------DPDQEECSGRRWNKLCTLNDSKG-SLYSV 116

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAA--------F 177
            + P            A    D  + L+DA       ++     +  ++          F
Sbjct: 117 KFAP-----AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDF 171

Query: 178 SVAFNP---TGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP- 232
            +++ P   +  K+  +   +++               + L G+K     ++ +I+++P 
Sbjct: 172 CLSWCPSRFSPEKLAVSALEQAIIYQRGK--DGKLHVAAKLPGHK----SLIRSISWAPS 225

Query: 233 -THTG-MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290
                 ++A G       I++                      S D +    G       
Sbjct: 226 IGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTE 285

Query: 291 LCWDL 295
              +L
Sbjct: 286 EKAEL 290

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 18/132 (13%)

Query: 178 SVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG 236
            V ++  G  +     ++ ++VF + +   ++E   + + +    + I++ I ++    G
Sbjct: 16  DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH---DSSIVA-IDWASPEYG 71

Query: 237 -MLAIGSYSQTSAIYREDNME---------LLYVLHGQEGGVTHVQFSRD--GNYLYTGG 284
            ++A  SY +T  ++ ED  +          L  L+  +G +  V+F+    G  L   G
Sbjct: 72  RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG 131

Query: 285 RKDPYILCWDLR 296
             D  +  +D  
Sbjct: 132 N-DGILRLYDAL 142

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 26/238 (10%), Positives = 57/238 (23%), Gaps = 50/238 (21%)

Query: 69  SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128
             D  + L  +++     +              ++ K+ +  +   +V  G         
Sbjct: 14  QYDFKAVLEENDENDDEFYI-------------NVDKNLNEIKEHKIVVLG--------- 51

Query: 129 PHMSASDPTSCV--------FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
            +    D                   D    L++          +  D            
Sbjct: 52  -NSRGVDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYT------AVDT 104

Query: 181 FNPTGTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG-ML 238
                 +         ++V D +       +    + +    + I   + F P+  G  L
Sbjct: 105 AKLQMRRFILGTTEGDIKVLDSN----FNLQREIDQAH---VSEITK-LKFFPS--GEAL 154

Query: 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
              S      I+   +      L G    VT +     G  + +    D  I  W+  
Sbjct: 155 ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL-DGTIRLWECG 211

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 31/265 (11%), Positives = 72/265 (27%), Gaps = 73/265 (27%)

Query: 61  NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
           +  KG  +   GS    +  D    +F                  +    + S ++   +
Sbjct: 57  DAGKGNTFEKVGSHLYKARLDGHDFLF------------------NTIIRDGSKMLKRAD 98

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSV 179
                              +  +   +  I + D+   L R   +A+   +        +
Sbjct: 99  YTAVDTAKL-----QMRRFILGT--TEGDIKVLDSNFNLQREIDQAHVSEI------TKL 145

Query: 180 AFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238
            F P+G  +  +  +  ++++ V    +D     TL G+   +A +   IA        +
Sbjct: 146 KFFPSGEALISSSQDMQLKIWSV----KDGSNPRTLIGH---RATVTD-IAIIDRGR-NV 196

Query: 239 AIGSYSQT---------------------------SAIYREDNMELLYVLHGQEGGVTHV 271
              S   T                            A++   +     +         ++
Sbjct: 197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTD---RQLHEISTSKKNNL 253

Query: 272 QFSRDGNYLYTGGRKDPYILCWDLR 296
           +F   G Y+  G      I   ++ 
Sbjct: 254 EFGTYGKYVIAGHV-SGVITVHNVF 277

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 21/227 (9%), Positives = 58/227 (25%), Gaps = 38/227 (16%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSL----------PENGISYDVNACSLAKDQDSYEASLVVT 117
               G + L++S D T+R++             +      VN+ +L    D     +  +
Sbjct: 189 IIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS 248

Query: 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAY-DAVDEITA 175
           +  ++     F              +      I + +  +          +  +      
Sbjct: 249 KKNNL----EF-----G-TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSC----- 293

Query: 176 AFSVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233
             S+  +            N  +  +D+  P     +   L      +   ++ + F+  
Sbjct: 294 -NSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGE--FL----INEGTPINNVYFAA- 345

Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYL 280
              +     +  +  +    + E        E     V      +  
Sbjct: 346 -GALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQF 391

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 49.5 bits (119), Expect = 5e-07
 Identities = 19/189 (10%), Positives = 56/189 (29%), Gaps = 43/189 (22%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           +++   G   +       + +         ++V          S E ++ +    +    
Sbjct: 253 LEFGTYGKYVIAGHVSGVITV---------HNV---------FSKEQTIQLPSKFT--CS 292

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNP 183
           C    ++     +    +   +  +  WD  +    +            I    +V F  
Sbjct: 293 CNS--LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG--TPIN---NVYFAA 345

Query: 184 TGTKIFAGYNKSVRVFDVH-----RPGRDFEKYSTLKG-NKEGQAGIMSAIAFSP---TH 234
               + +G++ S+++  +      RP  +FE  + L   +            +     ++
Sbjct: 346 GALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVS-----QFCYVSDDESN 400

Query: 235 TGMLAIGSY 243
             +L +G  
Sbjct: 401 GEVLEVGKN 409

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 46/242 (19%), Positives = 80/242 (33%), Gaps = 44/242 (18%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE-GESVYDFC 126
           WS DG    T S DK++ I                  +  + YE   V+ E  + V    
Sbjct: 115 WSNDGYYLATCSRDKSVWI--------------WETDESGEEYECISVLQEHSQDVKHVI 160

Query: 127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAY-DAVDEITAAFSVAFNP 183
           W P  +       + AS++ D  + +W        C      +   V      +S  F+ 
Sbjct: 161 WHPSEA-------LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV------WSSDFDK 207

Query: 184 TGTKIF---AGYNKSVRVFDVH-RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239
           T           + +VRV+        D +++       +     +  +A+     G++A
Sbjct: 208 TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF--NGLIA 265

Query: 240 IGSYSQTSAIYREDNMEL-LYVLHGQEGGVTHVQ----FSRDG-NYLYTGGRKDPYILCW 293
                   A+Y E + E  ++       GV  +        +G   L TGG  D  +  W
Sbjct: 266 SVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGD-DGIVNFW 324

Query: 294 DL 295
            L
Sbjct: 325 SL 326

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 39/249 (15%), Positives = 80/249 (32%), Gaps = 57/249 (22%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDF 125
           W P  S     S D T+ I         +     +    +    A +   EG    V   
Sbjct: 66  WRPHTSLLAAGSFDSTVSI---------WAKEESADRTFEMDLLAII---EGHENEVKGV 113

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAF-------- 177
            W    S         A+ +RD  + +W+                 E  +          
Sbjct: 114 AW----S---NDGYYLATCSRDKSVWIWETDES---------GEEYECISVLQEHSQDVK 157

Query: 178 SVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT-HT 235
            V ++P+   +  + Y+ +VR++  +    D+E  + L G++    G + +  F  T   
Sbjct: 158 HVIWHPSEALLASSSYDDTVRIWKDY--DDDWECVAVLNGHE----GTVWSSDFDKTEGV 211

Query: 236 GMLAIGSYSQT---------SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK 286
             L  GS   T             +++ +    +    +  V +V +  +G  + + G  
Sbjct: 212 FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA- 269

Query: 287 DPYILCWDL 295
           D  +  ++ 
Sbjct: 270 DGVLAVYEE 278

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 24/157 (15%)

Query: 142 ASTTRDHPIHLWDATTGLLRCTYRAY-----DAVDEITAAFSVAFNPTGTKI-FAGYNKS 195
           A+ + D  I L                     A+       SVA+ P  + +    ++ +
Sbjct: 28  ATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAI------RSVAWRPHTSLLAAGSFDST 81

Query: 196 VRVFDVH---RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT----SA 248
           V ++          + +  + ++G+   +  +   +A+S      LA  S  ++      
Sbjct: 82  VSIWAKEESADRTFEMDLLAIIEGH---ENEVKG-VAWSNDGY-YLATCSRDKSVWIWET 136

Query: 249 IYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR 285
               +  E + VL      V HV +      L +   
Sbjct: 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY 173

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 54.9 bits (133), Expect = 7e-09
 Identities = 26/190 (13%), Positives = 46/190 (24%), Gaps = 33/190 (17%)

Query: 64  KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EG--E 120
           K + W P  +   +SS D T+RI+                       +   V    G   
Sbjct: 157 KHVIWHPSEALLASSSYDDTVRIW------------------KDYDDDWECVAVLNGHEG 198

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEIT----AA 176
           +V+   +               S + D  + +W                           
Sbjct: 199 TVWSSDFDK-----TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQV 253

Query: 177 FSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG 236
           ++VA+   G     G +  + V++             L     G   I            
Sbjct: 254 YNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCH---GVYEINVVKWLELNGKT 310

Query: 237 MLAIGSYSQT 246
           +LA G     
Sbjct: 311 ILATGGDDGI 320

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 51.8 bits (125), Expect = 8e-08
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 17/117 (14%)

Query: 178 SVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235
           S  F+     I A    ++ +++  V               +K      + ++A+ P  +
Sbjct: 19  SFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHK----KAIRSVAWRPHTS 71

Query: 236 GMLAIGSYSQT-------SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR 285
            +LA GS+  T        +  R   M+LL ++ G E  V  V +S DG YL T  R
Sbjct: 72  -LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR 127

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 37/225 (16%), Positives = 67/225 (29%), Gaps = 45/225 (20%)

Query: 69  SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128
           +P+ S  +T S DKTL+          +D  + +            V+   E  Y     
Sbjct: 138 APNYSCVMTGSWDKTLKF---------WDTRSSNPMM---------VLQLPERCY----- 174

Query: 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188
                  P + V A+  R   ++  +      R                 VA        
Sbjct: 175 -CADVIYPMAVV-ATAERGLIVYQLENQPSEFRRIESPLKH-----QHRCVAIFKDKQNK 227

Query: 189 FAGY-----NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS--------AIAFSPTHT 235
             G+        V +  ++ P    + + T K ++       +         IAF P H 
Sbjct: 228 PTGFALGSIEGRVAIHYINPPNPAKDNF-TFKCHRSNGTNTSAPQDIYAVNGIAFHPVH- 285

Query: 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYL 280
           G LA        + + +D    L      +  ++   F+ +GN  
Sbjct: 286 GTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIF 330

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 36/243 (14%), Positives = 75/243 (30%), Gaps = 52/243 (21%)

Query: 51  NQFRTSSIPNNFLKGIKWSPD---GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ 107
                +S P++ +  + +SP    G+  +  S    +R          ++V        Q
Sbjct: 30  KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRC---------WEV--------Q 72

Query: 108 DSYEASLVVTEG--ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYR 165
           DS +      +     V D CW       D +    AS   D    +WD ++        
Sbjct: 73  DSGQTIPKAQQMHTGPVLDVCWSD-----DGSKVFTAS--CDKTAKMWDLSSNQAI-QIA 124

Query: 166 AYDAVDEITAAFSVAFN--PTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA 222
            +DA        ++ +   P  + +    ++K+++ +D                  +   
Sbjct: 125 QHDA-----PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS--------NPMMVLQLPE 171

Query: 223 GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--ELLYVLHGQEGGVTHVQFSRDGNYL 280
               A    P    M  + +  +   +Y+ +N   E   +    +     V   +D    
Sbjct: 172 RCYCADVIYP----MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNK 227

Query: 281 YTG 283
            TG
Sbjct: 228 PTG 230

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 29/240 (12%), Positives = 72/240 (30%), Gaps = 62/240 (25%)

Query: 68  WSPDGSSFLTS-SEDKTLRI-----FSLPENGISYDVNACSLAKDQDSYEASLVVTEGES 121
           +   G+S   S + D    +      S P++ I        L+    +   + ++     
Sbjct: 10  FGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIG------CLSFSPPTLPGNFLI----- 58

Query: 122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG---LLRCTYRAYDAVDEITAAFS 178
                     + S             + +  W+       + +        V        
Sbjct: 59  ----------AGSW-----------ANDVRCWEVQDSGQTIPKAQQMHTGPV------LD 91

Query: 179 VAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG- 236
           V ++  G+K+F A  +K+ +++D+        +   +  +    A + + I +       
Sbjct: 92  VCWSDDGSKVFTASCDKTAKMWDLSS-----NQAIQIAQH---DAPVKT-IHWIKAPNYS 142

Query: 237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            +  GS+ +T   +   +   + VL   E              + T  R    ++ + L 
Sbjct: 143 CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY-PMAVVATAERG---LIVYQLE 198

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 21/124 (16%)

Query: 178 SVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235
           +  F  +GT +F     +    + D+                      I   ++FSP   
Sbjct: 7   TSGFGTSGTSMFGSATTDNHNPMKDIE----------VTSSP---DDSI-GCLSFSPPTL 52

Query: 236 G--MLAIGSYSQTSAIY--REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL 291
               L  GS++     +  ++    +        G V  V +S DG+ ++T    D    
Sbjct: 53  PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC-DKTAK 111

Query: 292 CWDL 295
            WDL
Sbjct: 112 MWDL 115

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 31/211 (14%), Positives = 70/211 (33%), Gaps = 40/211 (18%)

Query: 105 KDQDSYEASLVVTEG--ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC 162
           K + S++    + E   + ++   +  H  + +    VFA+    + + L++  +     
Sbjct: 2   KCKYSFKCVNSLKEDHNQPLFGVQFNWH--SKEGDPLVFATV-GSNRVTLYECHSQGEIR 58

Query: 163 TYRAY-DAVDEI---TAAFSVAFNPTGTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGN 217
             ++Y DA  +    T A++   N +   +  AG    +R+ +        +      G+
Sbjct: 59  LLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI----TMQCIKHYVGH 114

Query: 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM---------ELLYV---LHGQE 265
                 I   + F P    +L   S          D+           L+ +   + G  
Sbjct: 115 ---GNAINE-LKFHPRDPNLLLSVSK---------DHALRLWNIQTDTLVAIFGGVEGHR 161

Query: 266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
             V    +   G  + + G  D  +  W + 
Sbjct: 162 DEVLSADYDLLGEKIMSCGM-DHSLKLWRIN 191

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 39/243 (16%), Positives = 70/243 (28%), Gaps = 60/243 (24%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
             +   G   ++   D +L+++ +  +                     ++    ES    
Sbjct: 167 ADYDLLGEKIMSCGMDHSLKLWRI-NSK-------------------RMMNAIKESY--- 203

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
            + P     + T+  F S      IH  D +T  +   Y     VD       V +   G
Sbjct: 204 DYNP-----NKTNRPFISQK----IHFPDFSTRDIHRNY-----VD------CVRWL--G 241

Query: 186 TKIF-AGYNKSVRVFDVH------RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG-M 237
             I       ++  +            +  E   T+ G  +     +  + FS      M
Sbjct: 242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM 301

Query: 238 LAIGSYSQT----SAIYREDNMELLYVL--HGQEGGVTHVQFSRDGNYLYTGGRKDPYIL 291
           LA+G+             + +      L  H     +    FSRD + L      D  I 
Sbjct: 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC-DDASIW 360

Query: 292 CWD 294
            WD
Sbjct: 361 RWD 363

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 58.4 bits (142), Expect = 7e-10
 Identities = 35/240 (14%), Positives = 72/240 (30%), Gaps = 70/240 (29%)

Query: 68  WSPDGSSFL----TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EG--E 120
           W+ D ++       +     +RI + P                        +    G   
Sbjct: 77  WTYDSNTSHPLLAVAGSRGIIRIIN-PITM-------------------QCIKHYVGHGN 116

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY----DAVDEITAA 176
           ++ +  + P     DP   +  S ++DH + LW+  T  L   +       D V      
Sbjct: 117 AINELKFHP----RDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV------ 164

Query: 177 FSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235
            S  ++  G KI   G + S++++ +          + +K           +  ++P  T
Sbjct: 165 LSADYDLLGEKIMSCGMDHSLKLWRI----NSKRMMNAIKE----------SYDYNPNKT 210

Query: 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL 295
                   SQ                      V  V++   G+ + +    +  I+CW  
Sbjct: 211 ---NRPFISQKIHFP------DFSTRDIHRNYVDCVRWL--GDLILSKSC-ENAIVCWKP 258

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 20/157 (12%)

Query: 53  FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA 112
           F T  I  N++  ++W  D    L+ S +  +           +         D+     
Sbjct: 224 FSTRDIHRNYVDCVRWLGD--LILSKSCENAIVC---------WKPGKMEDDIDKIKPSE 272

Query: 113 SLVVTEGESVYDFCWFPHMSAS-DPTSCVFASTTRDHPIHLWDATTG----LLRCTYRAY 167
           S V   G   Y  C   +M  S D    + A   +   +++WD            T   +
Sbjct: 273 SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH 332

Query: 168 DAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR 203
                I      +F+   + + A   + S+  +D  R
Sbjct: 333 KCGAAIR---QTSFSRDSSILIAVCDDASIWRWDRLR 366

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 67.2 bits (165), Expect = 5e-13
 Identities = 45/242 (18%), Positives = 79/242 (32%), Gaps = 55/242 (22%)

Query: 68  WSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYD 124
            S    + L S S DKTL  + L  +   + V   S               +G    V D
Sbjct: 25  TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF--------------KGHSHIVQD 70

Query: 125 FCWFPH----MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSV 179
                     +SAS            D  + LWD  TG     +  +   V       SV
Sbjct: 71  CTLTADGAYALSASW-----------DKTLRLWDVATGETYQRFVGHKSDV------MSV 113

Query: 180 AFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG-- 236
             +   + I     +K+++V+ +   G+      TL G+ +     +S +   P      
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIK--GQ--CLA-TLLGHNDW----VSQVRVVPNEKADD 164

Query: 237 ---MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293
               +      +    +  +  ++     G    +  +  S DG  + + G KD  I+ W
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG-KDGEIMLW 223

Query: 294 DL 295
           +L
Sbjct: 224 NL 225

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 65.6 bits (161), Expect = 2e-12
 Identities = 49/261 (18%), Positives = 90/261 (34%), Gaps = 51/261 (19%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSL-------PENGISYDVNACSLAKDQDSYEAS------- 113
            + DG+  L++S DKTLR++ +          G   DV +  + K   S   S       
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTI 131

Query: 114 --------LVVT-EG--ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC 162
                    + T  G  + V      P+  A D +  +  S   D  +  W+     +  
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI-ISAGNDKMVKAWNLNQFQIEA 190

Query: 163 TYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221
            +  ++    I    ++  +P GT I  AG +  + ++++       +   TL       
Sbjct: 191 DFIGHN--SNIN---TLTASPDGTLIASAGKDGEIMLWNLA----AKKAMYTLSAQ---- 237

Query: 222 AGIMSAIAFSPTHTGMLAIGSYS-------QTSAIYREDNMELLYVLHGQEGGVTHVQFS 274
              + ++AFSP     LA  + +           +  +   E        E     + +S
Sbjct: 238 -DEVFSLAFSPNRY-WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295

Query: 275 RDGNYLYTGGRKDPYILCWDL 295
            DG  L+ G   D  I  W +
Sbjct: 296 ADGQTLFAGYT-DNVIRVWQV 315

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 11/122 (9%)

Query: 178 SVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDF-EKYSTLKGNKEGQAGIMSAIAFSPTH 234
           S+A +     +      +K++  + +    + F     + KG+      I+     +   
Sbjct: 22  SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS----HIVQDCTLTAD- 76

Query: 235 TG-MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293
            G      S+ +T  ++     E      G +  V  V   +  + + +G R D  I  W
Sbjct: 77  -GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR-DKTIKVW 134

Query: 294 DL 295
            +
Sbjct: 135 TI 136

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-----SAIYREDNMELLYVLHGQEGG 267
            L+G  EG  G ++++A S     +L   S  +T          +     +    G    
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67

Query: 268 VTHVQFSRDGNYLYTGGRKDPYILCWDL 295
           V     + DG Y  +    D  +  WD+
Sbjct: 68  VQDCTLTADGAYALSASW-DKTLRLWDV 94

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 42/233 (18%), Positives = 82/233 (35%), Gaps = 54/233 (23%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDF 125
               G+  ++ S+D TL+++S    G                    L    G    V+  
Sbjct: 125 LQFCGNRIVSGSDDNTLKVWSA-VTG------------------KCLRTLVGHTGGVWSS 165

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPT 184
               ++  S        ST  D  + +W+A TG    T   +   V        +  +  
Sbjct: 166 QMRDNIIIS-------GST--DRTLKVWNAETGECIHTLYGHTSTV------RCMHLHE- 209

Query: 185 GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
             ++ +G  + ++RV+D+       +    L G+    A +   + +       +  G+Y
Sbjct: 210 -KRVVSGSRDATLRVWDIETG----QCLHVLMGH---VAAVRC-VQYDGRR---VVSGAY 257

Query: 244 SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
                ++  +    L+ L G    V  +QF  DG ++ +G   D  I  WD+ 
Sbjct: 258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL-DTSIRVWDVE 307

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 26/164 (15%)

Query: 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA--GYNKSVRVF 199
            S + D  I +WD  TG    T   +      +    +        I      + +V+++
Sbjct: 293 VSGSLDTSIRVWDVETGNCIHTLTGHQ--SLTS---GMELKD---NILVSGNADSTVKIW 344

Query: 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY 259
           D+       +   TL+G  + Q+ +   + F+      +   S   T  ++     E + 
Sbjct: 345 DIKT----GQCLQTLQGPNKHQSAVTC-LQFNKNF---VITSSDDGTVKLWDLKTGEFIR 396

Query: 260 VL-----HGQEGGVTHVQFSRDGNYLYTGGR---KDPYILCWDL 295
            L      G  G V  ++ S        G R   ++  +L  D 
Sbjct: 397 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 25/159 (15%)

Query: 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFD 200
            S   D  + +WD  T     T + +   + +    S+ F+  G  + +G  + S+RV+D
Sbjct: 253 VSGAYDFMVKVWDPETETCLHTLQGHT--NRVY---SLQFD--GIHVVSGSLDTSIRVWD 305

Query: 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV 260
           V           TL G++       S +         L  G+   T  I+     + L  
Sbjct: 306 VE----TGNCIHTLTGHQSL----TSGMELKDNI---LVSGNADSTVKIWDIKTGQCLQT 354

Query: 261 LHGQE---GGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
           L G       VT +QF  + N++ T    D  +  WDL+
Sbjct: 355 LQGPNKHQSAVTCLQF--NKNFVITSSD-DGTVKLWDLK 390

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 35/258 (13%), Positives = 71/258 (27%), Gaps = 76/258 (29%)

Query: 69  SPDGSSFLTSSEDKTLRIFSLPENGI--------SYDVNACSLAKDQDSYEASLVVTEGE 120
             + +  +T ++DK +R++    N             V A   A         ++V    
Sbjct: 129 QFEDNYVITGADDKMIRVYDS-INKKFLLQLSGHDGGVWALKYAHGG------ILV---- 177

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
                      S S            D  + +WD   G     +  ++    +     + 
Sbjct: 178 -----------SGST-----------DRTVRVWDIKKGCCTHVFEGHN--STVRC-LDIV 212

Query: 181 FNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT------ 233
                  I  G  + ++ V+ + +                G+      +  +P       
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKES---------SVPDHGEEHDYPLVFHTPEENPYFV 263

Query: 234 -----HTG----------MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278
                H            ++  GSY  T  ++    M+ LY+L G    +    +  +  
Sbjct: 264 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 323

Query: 279 YLYTGGRKDPYILCWDLR 296
              +    D  I  WDL 
Sbjct: 324 RCISASM-DTTIRIWDLE 340

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 38/240 (15%), Positives = 79/240 (32%), Gaps = 39/240 (16%)

Query: 66  IKWSPDGSSFLTSSEDKTLRI------FSLPENGISYDVNACSLAKDQDSYEASLVVTEG 119
           I    +    +T S D TL +       S+P++G  +D        +++ Y   + V  G
Sbjct: 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF--VGVLRG 268

Query: 120 --ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAF 177
              SV                 +  S + D+ + +WD            +   D I    
Sbjct: 269 HMASVRTV---------SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIY--- 314

Query: 178 SVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG 236
           S  ++    +  +   + ++R++D+   G       TL+G+    A +   +  S     
Sbjct: 315 STIYDHERKRCISASMDTTIRIWDLEN-GELMY---TLQGH---TALVGL-LRLSDKF-- 364

Query: 237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            L   +   +   +  ++    +  H          F    N L +G   +     ++LR
Sbjct: 365 -LVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS--ENQFNIYNLR 420

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 23/174 (13%)

Query: 128 FPHMSASDPTSCVFASTTRDHPIHLWDA-TTGLLRCTYRAYDAVDEITAAFSVAFNPTGT 186
           +P +S  D     F        +  W        R T R +     +             
Sbjct: 82  YPKLSQQDRLRLSFLE--NIFILKNWYNPKFVPQRTTLRGHM--TSVITCLQ----FEDN 133

Query: 187 KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ 245
            +  G  +K +RV+D        +    L     G  G + A+ ++      L  GS  +
Sbjct: 134 YVITGADDKMIRVYDSIN-K---KFLLQL----SGHDGGVWALKYAHGGI--LVSGSTDR 183

Query: 246 TSAIYREDNMELLYVLHGQEGGVTHVQ--FSRDGNYLYTGGRKDPYILCWDLRK 297
           T  ++        +V  G    V  +     ++  Y+ TG R D  +  W L K
Sbjct: 184 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR-DNTLHVWKLPK 236

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 33/280 (11%), Positives = 71/280 (25%), Gaps = 76/280 (27%)

Query: 47  YHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKD 106
           +     F + ++  +         D            L+ +                   
Sbjct: 65  FVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKNW------------------Y 106

Query: 107 QDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF------ASTTRDHPIHLWDATTGLL 160
              +        G              +   +C+        +   D  I ++D+     
Sbjct: 107 NPKFVPQRTTLRGHM------------TSVITCLQFEDNYVITGADDKMIRVYDSINKKF 154

Query: 161 RCTYRAY-DAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219
                 +   V      +++ +   G  +    +++VRV+D+ + G         +G+  
Sbjct: 155 LLQLSGHDGGV------WALKYAHGGILVSGSTDRTVRVWDIKK-G---CCTHVFEGHNS 204

Query: 220 GQAGIMSAIAFSPTHTGMLAIGSYSQT-----------------------SAIYREDNME 256
               +   I         +  GS   T                            E+N  
Sbjct: 205 TVRCL--DIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261

Query: 257 LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            + VL G    V  V     GN + +G   D  ++ WD+ 
Sbjct: 262 FVGVLRGHMASVRTVSG--HGNIVVSGSY-DNTLIVWDVA 298

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 61.6 bits (149), Expect = 5e-11
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 39/241 (16%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
            +++ D S  + S+  K+  I         Y+V+  +    Q+    S V          
Sbjct: 25  YEFNQDQSCLILST-LKSFEI---------YNVHPVAHIMSQEMRHLSKVR--------- 65

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
                M     T+ V   T     +H+WD          +    V        +  +   
Sbjct: 66  -----MLHR--TNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPV------KDLFLSRE- 111

Query: 186 TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ 245
             I   Y   + VF    P +         G  E   G++            +     S 
Sbjct: 112 -FIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSG 170

Query: 246 TS-----AIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
           ++      + ++  +    ++      +  V+ +R  + + T  +    I  +     V 
Sbjct: 171 SATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230

Query: 301 V 301
           V
Sbjct: 231 V 231

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 48.9 bits (116), Expect = 8e-07
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 10/94 (10%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           +KWS DGS     S+  TL +F +  +  +           + + +  + +   +S +  
Sbjct: 246 MKWSTDGSKLAVVSDKWTLHVFEIFNDQDN----------KRHALKGWINMKYFQSEWSL 295

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL 159
           C F          C  A  +    + +W  T  +
Sbjct: 296 CNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI 329

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 46/240 (19%), Positives = 80/240 (33%), Gaps = 57/240 (23%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           +KWS DGS       +  + I         YDV + +  +    ++A         V   
Sbjct: 140 VKWSHDGSFLSVGLGNGLVDI---------YDVESQTKLRTMAGHQA--------RVGCL 182

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPT 184
            W  H+ +S        S  R   IH  D         T + +    E+     +A+   
Sbjct: 183 SWNRHVLSS-------GS--RSGAIHHHDVRIANHQIGTLQGHS--SEVC---GLAWRSD 228

Query: 185 GTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
           G ++   G +  V+++D           S  K  K      + A+A+ P  + +LA G  
Sbjct: 229 GLQLASGGNDNVVQIWDAR--------SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280

Query: 244 SQTSAIYRED------NMELLYVLHGQEGG--VTHVQFSRDGNYLY-TGGRKDPYILCWD 294
           +        D      N      ++  + G  VT + +S     +  T G  D  +  W 
Sbjct: 281 TM-------DKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 333

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 34/168 (20%), Positives = 62/168 (36%), Gaps = 26/168 (15%)

Query: 135 DPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG- 191
           D ++    +   +  +++W+A +G             V       SV ++  G+ +  G 
Sbjct: 100 DWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYV------ASVKWSHDGSFLSVGL 153

Query: 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251
            N  V ++DV        K  T+     G    +  ++++      L+ GS S    I+ 
Sbjct: 154 GNGLVDIYDVES-QT---KLRTM----AGHQARVGCLSWNRHV---LSSGSRSGA--IHH 200

Query: 252 ED---NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            D       +  L G    V  + +  DG  L +GG  D  +  WD R
Sbjct: 201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN-DNVVQIWDAR 247

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 33/175 (18%), Positives = 55/175 (31%), Gaps = 44/175 (25%)

Query: 65  GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE-GESVY 123
           G+ W  DG    +   D  ++I+                  D  S       T    +V 
Sbjct: 222 GLAWRSDGLQLASGGNDNVVQIW------------------DARSSIPKFTKTNHNAAVK 263

Query: 124 DFCWFPHMS---ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
              W P  S   A+          T D  IH W+A TG    T  A   V       S+ 
Sbjct: 264 AVAWCPWQSNLLAT-------GGGTMDKQIHFWNAATGARVNTVDAGSQV------TSLI 310

Query: 181 FNPTGTKI--FAGY-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP 232
           ++P   +I    G+ + ++ ++          K   +  +      ++   A SP
Sbjct: 311 WSPHSKEIMSTHGFPDNNLSIWSY--SSSGLTKQVDIPAH---DTRVLY-SALSP 359

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 58.3 bits (142), Expect = 5e-10
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 18/161 (11%)

Query: 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFD 200
           AS +RD  + LW      L            +    SV ++     +   G +  +    
Sbjct: 33  ASVSRDGTVRLWSKDDQWLGTVVYTGQ--GFLN---SVCYDSEKELLLFGGKDTMINGVP 87

Query: 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV 260
           +     +   Y TL G+   Q  + S ++F     G++  GS+ +T+ ++      L+Y 
Sbjct: 88  LFATSGEDPLY-TLIGH---QGNVCS-LSFQD---GVVISGSWDKTAKVW--KEGSLVYN 137

Query: 261 LHGQEGGVTHVQ-FSRDGNYLYTGGRKDPYILCWDLRKAVQ 300
           L      V   +  S   N   T    D  I  W   K ++
Sbjct: 138 LQAHNASVWDAKVVSFSENKFLTASA-DKTIKLWQNDKVIK 177

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 54.8 bits (133), Expect = 7e-09
 Identities = 37/242 (15%), Positives = 71/242 (29%), Gaps = 56/242 (23%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSL--PENGI--------SYDVNACSLAKDQDSYEAS---- 113
           +  +    L   +D  +    L                 +V + S    QD    S    
Sbjct: 67  YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF---QDGVVISGSWD 123

Query: 114 -----------LVVTEG--ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL 160
                      +   +    SV+D        +      + AS   D  I LW      +
Sbjct: 124 KTAKVWKEGSLVYNLQAHNASVWDAKVV----SFSENKFLTAS--ADKTIKLWQ--NDKV 175

Query: 161 RCTYRAY--DAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218
             T+     D V        +A    G  I    +  +++ D+H      +   T +G++
Sbjct: 176 IKTFSGIHNDVV------RHLAVVDDGHFISCSNDGLIKLVDMH----TGDVLRTYEGHE 225

Query: 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN 278
                 +  I   P   G +      +T  I+ ++N  L  V+      +  V    +G+
Sbjct: 226 ----SFVYCIKLLPN--GDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD 279

Query: 279 YL 280
            +
Sbjct: 280 II 281

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 52.1 bits (126), Expect = 6e-08
 Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 41/178 (23%)

Query: 69  SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128
           S   + FLT+S DKT++++                    D    +      + V      
Sbjct: 152 SFSENKFLTASADKTIKLW------------------QNDKVIKTFSGIHNDVVRHLAVV 193

Query: 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188
                 D     F S + D  I L D  TG +  TY  ++    +     +   P G  +
Sbjct: 194 D-----DGH---FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFVY---CIKLLPNGDIV 240

Query: 189 FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT 246
             G +++VR++       +      +       A  + ++       G + +GS    
Sbjct: 241 SCGEDRTVRIWSK----ENGSLKQVI----TLPAISIWSVDCMS--NGDIIVGSSDNL 288

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 37/255 (14%), Positives = 80/255 (31%), Gaps = 53/255 (20%)

Query: 69  SPDGSSFLTSSEDKTLRIFSL-------PENGISYDVNACSLAKDQDSYEASLVVT---- 117
           + D S   + S D T+R++S                +N  S+  D +     L++     
Sbjct: 26  AVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLN--SVCYDSEK---ELLLFGGKD 80

Query: 118 ---EGESVYDF----CWFP---HMSASDPTSCV------FASTTRDHPIHLWDATTGLLR 161
               G  ++        +    H         +        S + D    +W    G L 
Sbjct: 81  TMINGVPLFATSGEDPLYTLIGH---QGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLV 135

Query: 162 CTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221
              +A++    +  A  V+F+     + A  +K+++++   +  +      T  G     
Sbjct: 136 YNLQAHN--ASVWDAKVVSFSENKF-LTASADKTIKLWQNDKVIK------TFSGIHND- 185

Query: 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLY 281
             +   +A      G     S      +      ++L    G E  V  ++   +G+ + 
Sbjct: 186 -VVRH-LAVVD--DGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIV- 240

Query: 282 TGGRKDPYILCWDLR 296
           + G  D  +  W   
Sbjct: 241 SCGE-DRTVRIWSKE 254

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 46.7 bits (112), Expect = 3e-06
 Identities = 24/160 (15%), Positives = 46/160 (28%), Gaps = 49/160 (30%)

Query: 65  GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124
            +    DG  F++ S D  +++          D++                   G+ +  
Sbjct: 189 HLAVVDDGH-FISCSNDGLIKL---------VDMHT------------------GDVLRT 220

Query: 125 FCWFPHMSASDPTSCV-------FASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAA 176
           +    H        C+         S   D  + +W    G L+        ++      
Sbjct: 221 YEG--H---ESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISI------ 269

Query: 177 FSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG 216
           +SV     G  I    +  VR+F      R +     +KG
Sbjct: 270 WSVDCMSNGDIIVGSSDNLVRIFSQE-KSR-WASEDEIKG 307

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 59.1 bits (142), Expect = 5e-10
 Identities = 22/239 (9%), Positives = 62/239 (25%), Gaps = 30/239 (12%)

Query: 66  IKWSPDGSS------FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG 119
           +KW     +          S++ T+    + +N     V                +  + 
Sbjct: 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK--------------MCEKP 258

Query: 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSV 179
                       +    +        ++  +  +D T      ++        I +  + 
Sbjct: 259 SLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE-VPSFYDQVHDSYILSVSTA 317

Query: 180 AFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238
             +   T +     +    +F+     +D     T      G    +  + + P      
Sbjct: 318 YSDFEDTVVSTVAVDGYFYIFNP----KDIATTKTTVSRFRG--SNLVPVVYCP-QIYSY 370

Query: 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
                + +           ++ L  +E  +T +  SR    +  G   D  ++  +  +
Sbjct: 371 IYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSA-DGSLIITNAAR 428

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 58.6 bits (141), Expect = 6e-10
 Identities = 19/163 (11%), Positives = 46/163 (28%), Gaps = 15/163 (9%)

Query: 140 VFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSV 196
           + A    D  + ++D            + +          +++     T +        V
Sbjct: 117 LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPN---AISIAEDDTTVIIADKFGDV 173

Query: 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM--LAIGSYSQTSAIYR-ED 253
              D++    +      +     G   +++ +       G   +      +   I     
Sbjct: 174 YSIDINSIPEEKFTQEPI----LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229

Query: 254 NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
              +   L G +  V+ +   +D   L + G  D  I  WD +
Sbjct: 230 CFIVDKWLFGHKHFVSSICCGKDY-LLLSAGG-DDKIFAWDWK 270

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 15/134 (11%), Positives = 36/134 (26%), Gaps = 8/134 (5%)

Query: 178 SVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF-------EKYSTLKGNKEGQAGIMSAIAF 230
           ++  +  G+ +FA     +  F    P           +     +             + 
Sbjct: 9   NLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSE 68

Query: 231 SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI 290
           +      L             +     L         + +++ + D + L      D  +
Sbjct: 69  NENENKKLKSNKGDSIKRTAAKVPSPGL-GAPPIYSYIRNLRLTSDESRLIACADSDKSL 127

Query: 291 LCWDLRKAVQVVYK 304
           L +D+ K  + V K
Sbjct: 128 LVFDVDKTSKNVLK 141

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 19/173 (10%), Positives = 45/173 (26%), Gaps = 46/173 (26%)

Query: 66  IKWSPDGSSFL-TSSEDKTLRIFSLPENG---------ISYDVNACSLA----------- 104
           ++ + D S  +  +  DK+L +F + +             +     +++           
Sbjct: 108 LRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIA 167

Query: 105 -KDQDSYEASL--VVTEGE----------SVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151
            K  D Y   +  +  E             + D                  ++ RD  I 
Sbjct: 168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK----DSDGHQFIITSDRDEHIK 223

Query: 152 LWDATTGLLRCTYRA--YDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVH 202
           +       +   +       V       S+        + AG +  +  +D  
Sbjct: 224 ISHYPQCFIVDKWLFGHKHFV------SSICCGKDYLLLSAGGDDKIFAWDWK 270

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 59/236 (25%)

Query: 69  SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128
             D    ++   D T++I+                            +  G         
Sbjct: 140 QYDDQKIVSGLRDNTIKIWDK-NTL------------------ECKRILTG--------- 171

Query: 129 PHMSASDPTSCV------FASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAF 181
            H   +    C+        + + D  + +WD  TG +  T   + +AV        + F
Sbjct: 172 -H---TGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV------LHLRF 221

Query: 182 NPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
           N     +     ++S+ V+D+     D      L G+   +A +   + F   +   +  
Sbjct: 222 N--NGMMVTCSKDRSIAVWDMAS-PTDITLRRVLVGH---RAAVNV-VDFDDKY---IVS 271

Query: 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            S  +T  ++     E +  L+G + G+  +Q+      + +G   D  I  WD+ 
Sbjct: 272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS-DNTIRLWDIE 324

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 31/165 (18%)

Query: 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFD 200
            S + D  I +W+ +T     T   +     I     + +      + +G  + ++R++D
Sbjct: 270 VSASGDRTIKVWNTSTCEFVRTLNGHK--RGIA---CLQYR--DRLVVSGSSDNTIRLWD 322

Query: 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT---------SAIYR 251
           +   G        L+G+   +  +   I F       +  G+Y                 
Sbjct: 323 IEC-G---ACLRVLEGH---EELVRC-IRFDNKR---IVSGAYDGKIKVWDLVAALDPRA 371

Query: 252 EDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
                 L  L    G V  +QF  D   + +    D  IL WD  
Sbjct: 372 PAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSS-HDDTILIWDFL 413

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 14/137 (10%)

Query: 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFD 200
            S + D+ I LWD   G        ++  + +     + F+    +I    Y+  ++V+D
Sbjct: 310 VSGSSDNTIRLWDIECGACLRVLEGHE--ELVR---CIRFD--NKRIVSGAYDGKIKVWD 362

Query: 201 VHRPGRDFEKYSTLKGNK--EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL 258
           +     D    +     +     +G +  + F       +   S+  T  I+   N    
Sbjct: 363 LVA-ALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ---IVSSSHDDTILIWDFLNDPAA 418

Query: 259 YVLHGQEGGVTHVQFSR 275
                +    T+   SR
Sbjct: 419 QAEPPRSPSRTYTYISR 435

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 54.1 bits (129), Expect = 2e-08
 Identities = 30/229 (13%), Positives = 67/229 (29%), Gaps = 28/229 (12%)

Query: 66  IKWSPDG----SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGES 121
           +  S D     +  ++S     +  F +              A  +      L+   G  
Sbjct: 98  LALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK------LLKDAGGM 151

Query: 122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF 181
           V D  W P + +      + A    D  I +   T  +  C            A  SV +
Sbjct: 152 VIDMKWNPTVPS------MVAVCLADGSIAVLQVTETVKVCATLPSTV-----AVTSVCW 200

Query: 182 NPTGTKIFAGY-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI 240
           +P G ++  G  N +V  +      ++ +        +      +  + +  T+   +  
Sbjct: 201 SPKGKQLAVGKQNGTVVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVY 258

Query: 241 GSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289
            +   T     E + +++  L  ++       F       Y    +  +
Sbjct: 259 AAADGTL----ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQH 303

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 49.5 bits (117), Expect = 6e-07
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 17/131 (12%)

Query: 178 SVAFNPTGTKIFAGY-----NKSVRVFDVH-------RPGRDFEKYSTLKGNKEGQAGIM 225
            +A +     + A          +  FDV        +  R F  +  LK         +
Sbjct: 97  HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGM----V 152

Query: 226 SAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR 285
             + ++PT   M+A+     + A+ +      +         VT V +S  G  L  G  
Sbjct: 153 IDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK- 211

Query: 286 KDPYILCWDLR 296
           ++  ++ +   
Sbjct: 212 QNGTVVQYLPT 222

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Length = 349

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 29/231 (12%), Positives = 53/231 (22%), Gaps = 18/231 (7%)

Query: 65  GIKWSPDGSSFLTSSEDKTL---RIFSLPENGISYDVNACSLAK-----DQDSYEASLVV 116
               SPDG     +              P     +       AK             +  
Sbjct: 96  SFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA 155

Query: 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAA 176
            +  S+Y     P +   D  +      T   P+  W+            +         
Sbjct: 156 ADDGSLY--VAGPDIYKMDVKT---GKYTVALPLRNWNRKGYSAPDVLYFWPH-QSPRHE 209

Query: 177 FSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG 236
           FS+ +     K     + +           D +   T          +      SP    
Sbjct: 210 FSMLYTIARFKD-DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK-DP 267

Query: 237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287
               G  ++ +    +    +             V F + G+ LY GG  +
Sbjct: 268 NQIYGVLNRLAKYDLKQRKLIKAANLDH--TYYCVAFDKKGDKLYLGGTFN 316

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	304
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.98
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.98
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.78
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.73
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.7
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.69
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.67
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.67
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.65
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.64
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.62
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.62
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.61
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.59
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.59
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.59
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.58
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.57
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.56
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.56
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.54
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.53
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.53
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.53
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.52
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.52
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.52
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.51
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.5
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.48
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.48
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.46
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.43
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.42
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.42
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.41
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.39
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.39
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.38
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.38
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.32
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.32
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.3
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.27
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.27
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.24
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.23
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.21
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.21
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.18
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.17
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.14
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.13
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.1
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.08
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.08
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.08
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.07
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.07
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.0
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.0
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.0
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.95
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.94
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.88
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.82
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.81
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.81
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.78
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.78
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.78
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.77
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.74
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.73
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.67
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.67
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.65
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.65
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.64
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.63
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.6
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.6
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.59
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.58
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.58
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.55
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.55
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.55
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.54
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.53
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.53
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.48
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.47
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.44
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.41
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.4
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.4
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.39
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.37
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.32
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.31
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.31
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.31
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.29
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.28
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.24
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.19
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.18
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.17
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.15
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	98.12
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.11
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.1
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.09
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.09
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.07
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.07
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.06
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.05
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.01
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.97
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.97
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.9
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.87
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.82
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.78
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.74
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.56
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.54
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.51
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.42
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.24
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.22
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.22
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.18
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.03
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.02
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.77
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.74
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.66
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.64
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.64
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.62
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.56
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.52
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.45
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.45
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.44
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.31
3ott_A	758	Two-component system sensor histidine kinase; beta	96.19
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.09
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.02
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.94
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.93
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.8
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.68
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.66
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.62
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.44
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.23
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.22
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.87
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.74
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.45
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.43
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.14
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.09
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.6
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.11
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.09
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	90.74
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.28
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.18
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.47
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	88.04
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	85.56
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	83.2
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	81.21
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	80.23

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=257.49  Aligned_cols=241  Identities=14%  Similarity=0.168  Sum_probs=184.0

Q ss_pred             cccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccC
Q 022019           28 NQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ  107 (304)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  107 (304)
                      +...+.|....|...................|...|.+++|+|++ .|++|+.||+|+|||+.+++....          
T Consensus        50 d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~----------  118 (344)
T 4gqb_B           50 SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIV----------  118 (344)
T ss_dssp             CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEE----------
T ss_pred             CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeE----------
Confidence            445666754444332222211111122334567889999999985 788999999999999987643211          


Q ss_pred             CccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCc-
Q 022019          108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-  186 (304)
Q Consensus       108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-  186 (304)
                         .......|...|.+++|       +|++++|++|+.|++|++||+++++.+..+..|..     .|.+++|+|++. 
T Consensus       119 ---~~~~~~~H~~~V~~v~~-------spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~-----~V~~~~~~~~~~~  183 (344)
T 4gqb_B          119 ---SKFCKYEHDDIVSTVSV-------LSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA-----QVTCVAASPHKDS  183 (344)
T ss_dssp             ---EEEEEECCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECSSCTT
T ss_pred             ---eeccccCCCCCEEEEEE-------CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC-----ceEEEEecCCCCC
Confidence               11133467789999988       77999999999999999999999999988887665     999999999885 


Q ss_pred             EEEE-EcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc
Q 022019          187 KIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE  265 (304)
Q Consensus       187 ~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  265 (304)
                      ++++ +.|+.|++||++.... .   ..+.  ...+...+.+++|+|+++.+|++|+.||.|++||+++++++.++.+|.
T Consensus       184 ~l~s~s~D~~v~iwd~~~~~~-~---~~~~--~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~  257 (344)
T 4gqb_B          184 VFLSCSEDNRILLWDTRCPKP-A---SQIG--CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS  257 (344)
T ss_dssp             EEEEEETTSCEEEEETTSSSC-E---EECC------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCS
T ss_pred             ceeeeccccccccccccccce-e---eeee--cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC
Confidence            5665 4999999999987422 1   1111  133455689999999888899999999999999999999999999999


Q ss_pred             CCeEEEEECCCC-cEEEEeeccCCeEEEEecccceee
Q 022019          266 GGVTHVQFSRDG-NYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       266 ~~v~~~~~~~~~-~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      ..|++++|+|+| ++|++|+ .|++|+|||+++++.+
T Consensus       258 ~~v~~v~fsp~g~~~lasgs-~D~~i~vwd~~~~~~~  293 (344)
T 4gqb_B          258 QCVTGLVFSPHSVPFLASLS-EDCSLAVLDSSLSELF  293 (344)
T ss_dssp             SCEEEEEECSSSSCCEEEEE-TTSCEEEECTTCCEEE
T ss_pred             CCEEEEEEccCCCeEEEEEe-CCCeEEEEECCCCcEE
Confidence            999999999998 5789999 9999999999988654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.1e-38  Score=256.37  Aligned_cols=212  Identities=15%  Similarity=0.215  Sum_probs=178.2

Q ss_pred             ceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      +....+.+|.+.|++++|+|++++|++|+.||+|++||+.++....                 ....+...|.+++|   
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-----------------~~~~~~~~v~~~~~---  105 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH-----------------AIPLRSSWVMTCAY---  105 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE-----------------EEECSSSCEEEEEE---
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce-----------------EeecCCccEEEEEE---
Confidence            4456889999999999999999999999999999999987653321                 22345567888877   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCe----eeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCc
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGL----LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR  206 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~  206 (304)
                          +|++++|++|+.|+.|++|++.++.    ....+..|.     ..|.++.|++++.+++++.|+.|++||+++.. 
T Consensus       106 ----s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~-  175 (340)
T 1got_B          106 ----APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT-----GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ-  175 (340)
T ss_dssp             ----CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCS-----SCEEEEEEEETTEEEEEETTSCEEEEETTTTE-
T ss_pred             ----CCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCC-----ccEEEEEECCCCcEEEEECCCcEEEEECCCCc-
Confidence                7799999999999999999998753    333344443     38999999998875556799999999998731 


Q ss_pred             cceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeecc
Q 022019          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK  286 (304)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  286 (304)
                             ......+|...|.+++|+| ++.++++|+.||.|++||++++.++..+.+|...|++++|+|++.+|++++ .
T Consensus       176 -------~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~  246 (340)
T 1got_B          176 -------QTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-D  246 (340)
T ss_dssp             -------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred             -------EEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-C
Confidence                   1222367888999999999 778999999999999999999999999999999999999999999999999 9


Q ss_pred             CCeEEEEecccceee
Q 022019          287 DPYILCWDLRKAVQV  301 (304)
Q Consensus       287 d~~i~vwd~~~~~~~  301 (304)
                      ||+|++||+++++.+
T Consensus       247 d~~v~iwd~~~~~~~  261 (340)
T 1got_B          247 DATCRLFDLRADQEL  261 (340)
T ss_dssp             TSCEEEEETTTTEEE
T ss_pred             CCcEEEEECCCCcEE
Confidence            999999999987654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.3e-38  Score=254.95  Aligned_cols=226  Identities=17%  Similarity=0.171  Sum_probs=176.1

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+.+|++.........  ...+.+|.+.|++++|+|+|++|++|+.||+|++||+.++...                 ..
T Consensus       104 ~v~lWd~~~~~~~~~~--~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~-----------------~~  164 (344)
T 4gqb_B          104 AVELWELDENETLIVS--KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL-----------------SS  164 (344)
T ss_dssp             EEEEEEECTTSSCEEE--EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------------EE
T ss_pred             EEEEEeccCCCceeEe--eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE-----------------EE
Confidence            3556666655443321  1245689999999999999999999999999999999865432                 23


Q ss_pred             EeecCCeEEEEeecCccceeCCCc-cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC-CcEEEEE-
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAG-  191 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-  191 (304)
                      ...|...|.+++|       ++++ .+|++++.|++|++||+++++....+....   +...+.+++|+|+ ++++++| 
T Consensus       165 ~~~h~~~V~~~~~-------~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          165 YRAHAAQVTCVAA-------SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA---PGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             ECCCSSCEEEEEE-------CSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEEE
T ss_pred             EcCcCCceEEEEe-------cCCCCCceeeeccccccccccccccceeeeeecce---eeccceeeeecCCCCcceEEec
Confidence            3457789999988       5555 578999999999999999998877664332   2226889999995 5677765 


Q ss_pred             cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEE
Q 022019          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV  271 (304)
Q Consensus       192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~  271 (304)
                      .|+.|++||+++.. .       .....+|...|++++|+|++..+|++|+.|+.|+|||+++++++ .+.+|.+.|+++
T Consensus       235 ~dg~v~~wd~~~~~-~-------~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v  305 (344)
T 4gqb_B          235 ENGTVSLVDTKSTS-C-------VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDA  305 (344)
T ss_dssp             TTSEEEEEESCC---C-------CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEE
T ss_pred             cCCcEEEEECCCCc-E-------EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEE
Confidence            89999999998742 1       12236788899999999966678999999999999999988765 578899999999


Q ss_pred             EECCCCc-EEEEeeccCCeEEEEecccce
Q 022019          272 QFSRDGN-YLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       272 ~~~~~~~-~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      +|+|++. +|++++ .|++|++|++.+..
T Consensus       306 ~~sp~~~~llas~s-~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          306 TWSPLNHSLLTTVG-WDHQVVHHVVPTEP  333 (344)
T ss_dssp             EECSSSTTEEEEEE-TTSCEEEEECCC--
T ss_pred             EEeCCCCeEEEEEc-CCCeEEEEECCCCC
Confidence            9999986 566888 99999999997653

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.3e-38  Score=252.34  Aligned_cols=204  Identities=19%  Similarity=0.316  Sum_probs=177.7

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      +..+..|...+.+++|+|++++|++|+.||.|++|++.++....                 ....+...+.+++|     
T Consensus       115 ~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~-----------------~~~~~~~~v~~~~~-----  172 (321)
T 3ow8_A          115 IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY-----------------SLDTRGKFILSIAY-----  172 (321)
T ss_dssp             EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE-----------------EEECSSSCEEEEEE-----
T ss_pred             EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE-----------------EecCCCceEEEEEE-----
Confidence            34667889999999999999999999999999999998654321                 22334567888877     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                        +|++++|++|+.||.|++||+++++....+..+..     .|.+++|+|++++|+++ .|+.|++||++...      
T Consensus       173 --spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~------  239 (321)
T 3ow8_A          173 --SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM-----PIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN------  239 (321)
T ss_dssp             --CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CCCEEEECTTSCEEEEECTTSCEEEEETTTCC------
T ss_pred             --CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCC-----ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc------
Confidence              78999999999999999999999998888876654     89999999999999966 99999999998632      


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                        ......+|...|.+++|+| ++.+|++|+.|+.|++||+++++++.++.+|...|.+++|+|+|.+|++++ .||.|+
T Consensus       240 --~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~-~d~~i~  315 (321)
T 3ow8_A          240 --LAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG-DDQEIH  315 (321)
T ss_dssp             --EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTCCEE
T ss_pred             --eeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe-CCCeEE
Confidence              1222367888999999999 777999999999999999999999999999999999999999999999999 999999


Q ss_pred             EEec
Q 022019          292 CWDL  295 (304)
Q Consensus       292 vwd~  295 (304)
                      +||.
T Consensus       316 vwd~  319 (321)
T 3ow8_A          316 IYDC  319 (321)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.8e-38  Score=261.08  Aligned_cols=210  Identities=20%  Similarity=0.300  Sum_probs=182.0

Q ss_pred             eeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      +.+.+|.+.|++++|+|++++|++|+.||+|++||+.+.....                 ....|...|.+++|      
T Consensus       144 ~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~-----------------~~~~h~~~V~~v~~------  200 (410)
T 1vyh_C          144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR-----------------TMHGHDHNVSSVSI------  200 (410)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE-----------------CCCCCSSCEEEEEE------
T ss_pred             EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-----------------EEcCCCCCEEEEEE------
Confidence            4788999999999999999999999999999999997654322                 12345678999888      


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeee
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~  212 (304)
                       +|++++|++|+.|++|++||++++.....+..+..     .|.++.|+|++.+++++ .|+.|++||++...       
T Consensus       201 -~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-------  267 (410)
T 1vyh_C          201 -MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-----WVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-------  267 (410)
T ss_dssp             -CSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------
T ss_pred             -eCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc-----cEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-------
Confidence             67899999999999999999999998888876654     89999999999999965 99999999998632       


Q ss_pred             eeeccccccccceeEEEeecCC-------------------CcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEE
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTH-------------------TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF  273 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~-------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  273 (304)
                       ......+|...|.+++|+|+.                   +.+|++|+.|+.|++||++++.++..+.+|...|++++|
T Consensus       268 -~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~  346 (410)
T 1vyh_C          268 -CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF  346 (410)
T ss_dssp             -EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             -eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEE
Confidence             112235788889999999942                   568999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeeccCCeEEEEecccceee
Q 022019          274 SRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       274 ~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +|+|++|++++ .||.|++||+++++++
T Consensus       347 ~~~g~~l~s~s-~D~~i~vwd~~~~~~~  373 (410)
T 1vyh_C          347 HSGGKFILSCA-DDKTLRVWDYKNKRCM  373 (410)
T ss_dssp             CSSSSCEEEEE-TTTEEEEECCTTSCCC
T ss_pred             cCCCCEEEEEe-CCCeEEEEECCCCceE
Confidence            99999999999 9999999999887654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.2e-37  Score=246.56  Aligned_cols=224  Identities=17%  Similarity=0.273  Sum_probs=183.1

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..|+......      ++.+.+|..+|.+++|+|++++|++|+.|++|++||+.+++..                 ..
T Consensus        36 ~v~lWd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~-----------------~~   92 (304)
T 2ynn_A           36 RVELWNYETQVE------VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-----------------VD   92 (304)
T ss_dssp             EEEEEETTTTEE------EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE-----------------EE
T ss_pred             cEEEEECCCCce------eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEE-----------------EE
Confidence            345566665443      3367789999999999999999999999999999999865432                 13


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCC-eeeEEeecccccccccceEEEEECC-CCcEEEEE-
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-  191 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-  191 (304)
                      ...|...|.+++|       +|++.+|++|+.||+|++||++++ .....+..|..     .|.+++|+| ++..|++| 
T Consensus        93 ~~~h~~~v~~~~~-------~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~~l~sgs  160 (304)
T 2ynn_A           93 FEAHPDYIRSIAV-------HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-----FVMCVAFNPKDPSTFASGC  160 (304)
T ss_dssp             EECCSSCEEEEEE-------CSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCS-----CEEEEEECTTCTTEEEEEE
T ss_pred             EeCCCCcEEEEEE-------cCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCC-----cEEEEEECCCCCCEEEEEe
Confidence            3456788999988       778999999999999999999877 44455555544     899999999 57888855 


Q ss_pred             cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecC-CCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEE
Q 022019          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT-HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH  270 (304)
Q Consensus       192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~  270 (304)
                      .|+.|++||++.......    +   ..++...+..+.|+|. ++.+|++|+.|+.|++||+++++++..+.+|...|.+
T Consensus       161 ~D~~v~iwd~~~~~~~~~----~---~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~  233 (304)
T 2ynn_A          161 LDRTVKVWSLGQSTPNFT----L---TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF  233 (304)
T ss_dssp             TTSEEEEEETTCSSCSEE----E---ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             CCCeEEEEECCCCCccce----e---ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEE
Confidence            999999999976432211    1   1345567888999873 4569999999999999999999999999999999999


Q ss_pred             EEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       271 ~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      ++|+|++++|++++ .||+|++||+++++.+
T Consensus       234 ~~~~p~~~~l~s~s-~Dg~i~iWd~~~~~~~  263 (304)
T 2ynn_A          234 AVFHPTLPIIISGS-EDGTLKIWNSSTYKVE  263 (304)
T ss_dssp             EEECSSSSEEEEEE-TTSCEEEEETTTCCEE
T ss_pred             EEECCCCCEEEEEc-CCCeEEEEECCCCcee
Confidence            99999999999999 9999999999987654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.8e-38  Score=249.53  Aligned_cols=212  Identities=21%  Similarity=0.287  Sum_probs=179.3

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      .+.+.+|.+.|++++|+|++++|++|+.||+|++||+.++...                 .....+..+|.+++|     
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~-----------------~~~~~~~~~v~~~~~-----   63 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV-----------------RSIQVTETPVRAGKF-----   63 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-----------------EEEECCSSCEEEEEE-----
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee-----------------EEeeccCCcEEEEEE-----
Confidence            4478899999999999999999999999999999999865321                 123345578888877     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                        +|++++|++|+.|+.|++||+.+++....+..|..     .|.+++|+|+++++++| .|++|++||++...      
T Consensus        64 --~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------  130 (304)
T 2ynn_A           64 --IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-----YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------  130 (304)
T ss_dssp             --EGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEEGGGTT------
T ss_pred             --eCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCC-----cEEEEEEcCCCCEEEEECCCCeEEEEECCCCc------
Confidence              66899999999999999999999998888887665     89999999999999965 99999999997632      


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-cccCCeEEEEECC--CCcEEEEeeccCC
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSR--DGNYLYTGGRKDP  288 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~~d~  288 (304)
                       .+.....+|...|.+++|+|.++.+|++|+.|+.|++||++...+...+. +|...+..+.|+|  ++.+|++++ .|+
T Consensus       131 -~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~  208 (304)
T 2ynn_A          131 -ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDL  208 (304)
T ss_dssp             -EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTS
T ss_pred             -chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCC
Confidence             12222367888999999999777899999999999999998877666664 5667899999986  778999999 999


Q ss_pred             eEEEEecccceee
Q 022019          289 YILCWDLRKAVQV  301 (304)
Q Consensus       289 ~i~vwd~~~~~~~  301 (304)
                      +|++||+++++++
T Consensus       209 ~i~iWd~~~~~~~  221 (304)
T 2ynn_A          209 TIKIWDYQTKSCV  221 (304)
T ss_dssp             EEEEEETTTTEEE
T ss_pred             eEEEEeCCCCccc
Confidence            9999999998765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.9e-38  Score=252.60  Aligned_cols=209  Identities=19%  Similarity=0.278  Sum_probs=179.6

Q ss_pred             eeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      ..+.+|...|.+++|++++.++++++.|++|++||+.++....                 ....+...+..++|      
T Consensus        74 ~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~-----------------~~~~~~~~~~~~~~------  130 (321)
T 3ow8_A           74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK-----------------SIDAGPVDAWTLAF------  130 (321)
T ss_dssp             EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-----------------EEECCTTCCCCEEE------
T ss_pred             eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE-----------------EEeCCCccEEEEEE------
Confidence            3678999999999999999999999999999999998653321                 11223345555655      


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeee
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~  212 (304)
                       +|++++|++++.||.|++||+++++....+..+..     .+.+++|+|++++|+++ .|+.|++||+++.    +   
T Consensus       131 -spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~-----~v~~~~~spdg~~lasg~~dg~i~iwd~~~~----~---  197 (321)
T 3ow8_A          131 -SPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK-----FILSIAYSPDGKYLASGAIDGIINIFDIATG----K---  197 (321)
T ss_dssp             -CTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTT----E---
T ss_pred             -CCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc-----eEEEEEECCCCCEEEEEcCCCeEEEEECCCC----c---
Confidence             88999999999999999999999988777766554     89999999999999966 9999999999863    1   


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                       ......+|..+|.+++|+| ++.+|++|+.|+.|++||++.++++..+.+|...|.+++|+|++++|++++ .|++|++
T Consensus       198 -~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~i  274 (321)
T 3ow8_A          198 -LLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS-SDKSVKV  274 (321)
T ss_dssp             -EEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEE
T ss_pred             -EEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe-CCCcEEE
Confidence             1222367888999999999 778999999999999999999999999999999999999999999999999 9999999


Q ss_pred             Eecccceee
Q 022019          293 WDLRKAVQV  301 (304)
Q Consensus       293 wd~~~~~~~  301 (304)
                      ||+++++++
T Consensus       275 wd~~~~~~~  283 (321)
T 3ow8_A          275 WDVGTRTCV  283 (321)
T ss_dssp             EETTTTEEE
T ss_pred             EeCCCCEEE
Confidence            999998765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-37  Score=258.16  Aligned_cols=209  Identities=20%  Similarity=0.286  Sum_probs=182.3

Q ss_pred             eeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      ..+.+|.++|++++|+|++.+|++|+.||+|+|||+.++....                 ....|...|.+++|      
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~-----------------~l~~h~~~V~~v~~------  158 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER-----------------TLKGHTDSVQDISF------  158 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE-----------------EECCCSSCEEEEEE------
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-----------------EEeccCCcEEEEEE------
Confidence            3678999999999999999999999999999999998664322                 33456688999988      


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeee
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~  212 (304)
                       +|++++|++|+.|++|++||+.+++....+..|..     .|.+++|+|++.+++++ .|+.|++||++++.    ...
T Consensus       159 -~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~-----~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~----~~~  228 (410)
T 1vyh_C          159 -DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH-----NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY----CVK  228 (410)
T ss_dssp             -CTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSS-----CEEEEEECSSSSEEEEEETTSEEEEEETTTCC----EEE
T ss_pred             -cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCC-----CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc----EEE
Confidence             77899999999999999999999888877776654     89999999999999965 99999999998742    112


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCC----------------
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD----------------  276 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----------------  276 (304)
                          ...+|...|.++.|+| ++.+|++|+.|+.|++||++++++...+.+|...|.+++|+|+                
T Consensus       229 ----~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  303 (410)
T 1vyh_C          229 ----TFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK  303 (410)
T ss_dssp             ----EEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred             ----EEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccc
Confidence                2257888899999999 7889999999999999999999999999999999999999996                


Q ss_pred             ----CcEEEEeeccCCeEEEEecccceee
Q 022019          277 ----GNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       277 ----~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                          |.+|++|+ .|+.|++||+++++++
T Consensus       304 ~~~~g~~l~sgs-~D~~i~iwd~~~~~~~  331 (410)
T 1vyh_C          304 SGKPGPFLLSGS-RDKTIKMWDVSTGMCL  331 (410)
T ss_dssp             ----CCEEEEEE-TTSEEEEEETTTTEEE
T ss_pred             cCCCCCEEEEEe-CCCeEEEEECCCCceE
Confidence                67899999 9999999999998765

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.1e-37  Score=250.02  Aligned_cols=229  Identities=20%  Similarity=0.285  Sum_probs=181.2

Q ss_pred             ceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccc-------ccccc-----------------
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC-------SLAKD-----------------  106 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-------~~~~~-----------------  106 (304)
                      +..+.+.+|.+.|++++|+|++++|+||+.||+|++||..+..........       .+.+.                 
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            455688999999999999999999999999999999998766543222111       00000                 


Q ss_pred             -------CCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEE
Q 022019          107 -------QDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSV  179 (304)
Q Consensus       107 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i  179 (304)
                             ...........|...|.++.|       +|++..|++++.|++|++||+++++....+..|..     .|.++
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~-------~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~-----~v~~~  202 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSF-------TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGA-----DVLCL  202 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEE-------CSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEE
T ss_pred             EeccccccccccceeeeccCCcEEEEEE-------eCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC-----CeEEE
Confidence                   000112233456667777776       77888999999999999999999999888877664     89999


Q ss_pred             EECC--CCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce
Q 022019          180 AFNP--TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (304)
Q Consensus       180 ~~~~--~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~  256 (304)
                      +|+|  ++++|++| .|+.|++||+++..    .    .....+|...|.+++|+| ++.+|++|+.|+.|++||++..+
T Consensus       203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~----~----~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~  273 (354)
T 2pbi_B          203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQ----C----VQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADR  273 (354)
T ss_dssp             EECCCSSCCEEEEEETTSCEEEEETTTCC----E----EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTE
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEECCCCc----E----EEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCc
Confidence            9988  46788865 99999999998742    1    122367888999999999 77899999999999999999988


Q ss_pred             EeEEeccc--cCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          257 LLYVLHGQ--EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       257 ~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      .+..+..+  ...+.+++|+|+|.+|++++ .|+.|++||+.+++.+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~d~~i~vwd~~~~~~~  319 (354)
T 2pbi_B          274 EVAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVLKGSRV  319 (354)
T ss_dssp             EEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCSEE
T ss_pred             EEEEEcCCCcccceeEEEEeCCCCEEEEEE-CCCcEEEEECCCCceE
Confidence            77777543  34789999999999999999 9999999999887654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.7e-37  Score=245.79  Aligned_cols=216  Identities=18%  Similarity=0.288  Sum_probs=181.9

Q ss_pred             eeeeecCCCCceeEEEEcCCC-CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           52 QFRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        52 ~~~~~~~h~~~V~~i~~s~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      ....+.+|.+.|++++|+|++ ++|++|+.|++|++|++.......            .........|...|.+++|   
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~---   73 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF------------GVPVRSFKGHSHIVQDCTL---   73 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE------------EEEEEEEECCSSCEEEEEE---
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc------------cccceEEeCCcccEEEEEE---
Confidence            345789999999999999955 899999999999999986322100            1112234567788999887   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                          +|++++|++|+.|++|++||+.+++....+..|..     .|.+++|+|++.+++++ .|+.|++||++..     
T Consensus        74 ----s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-----  139 (319)
T 3frx_A           74 ----TADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-----DVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-----  139 (319)
T ss_dssp             ----CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSCEEEEEETTSCEEEEETTSC-----
T ss_pred             ----CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCC-----cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----
Confidence                77999999999999999999999998888877665     89999999999999965 9999999999641     


Q ss_pred             eeeeeeccccccccceeEEEeecC-----CCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPT-----HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      ....    ..+|...+.++.|+|.     ++..+++++.|+.|++||+++.+....+.+|...|.+++|+|+|++|++++
T Consensus       140 ~~~~----~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~  215 (319)
T 3frx_A          140 CLAT----LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG  215 (319)
T ss_dssp             EEEE----ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE
T ss_pred             eEEE----EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe
Confidence            1122    2578888999999984     234899999999999999999999999999999999999999999999999


Q ss_pred             ccCCeEEEEecccceee
Q 022019          285 RKDPYILCWDLRKAVQV  301 (304)
Q Consensus       285 ~~d~~i~vwd~~~~~~~  301 (304)
                       .||.|++||+++++.+
T Consensus       216 -~dg~i~iwd~~~~~~~  231 (319)
T 3frx_A          216 -KDGEIMLWNLAAKKAM  231 (319)
T ss_dssp             -TTCEEEEEETTTTEEE
T ss_pred             -CCCeEEEEECCCCcEE
Confidence             9999999999988765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.4e-37  Score=251.82  Aligned_cols=236  Identities=19%  Similarity=0.317  Sum_probs=172.3

Q ss_pred             eeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccc-------cccc-------------------
Q 022019           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC-------SLAK-------------------  105 (304)
Q Consensus        52 ~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-------~~~~-------------------  105 (304)
                      ..+.+.+|.+.|++++|+|++++|+||+.||+|+|||+.++.....+..+       .+.+                   
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence            34578999999999999999999999999999999998765432111100       0000                   


Q ss_pred             -----------------cC-------------C---------ccceEE----------E-----eecCCeEEEEeecCcc
Q 022019          106 -----------------DQ-------------D---------SYEASL----------V-----VTEGESVYDFCWFPHM  131 (304)
Q Consensus       106 -----------------~~-------------~---------~~~~~~----------~-----~~~~~~v~~~~~~~~~  131 (304)
                                       ++             .         ......          .     ..|...|.++.|.   
T Consensus       138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~---  214 (380)
T 3iz6_a          138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN---  214 (380)
T ss_dssp             CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC---
T ss_pred             CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee---
Confidence                             00             0         000000          0     1122233333332   


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcC-CCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                         .+++++|++|+.|++|++||++ .+.....+..|..     .|.+++|+|++++|+++ .|++|++||++++. ...
T Consensus       215 ---~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~-~~~  285 (380)
T 3iz6_a          215 ---SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG-----DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH-QLQ  285 (380)
T ss_dssp             ---SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSS-----CCCEEEECTTSSEEEEECSSSCEEEEETTTTE-EEE
T ss_pred             ---cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCC-----CeEEEEEecCCCeEEEEcCCCeEEEEECCCCc-EEE
Confidence               2378899999999999999998 4466666665554     89999999999999966 99999999998742 111


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEe----ccccCCeEEEEECCCCcEEEEeec
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL----HGQEGGVTHVQFSRDGNYLYTGGR  285 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~  285 (304)
                      .+.........+...+++++|+| ++.+|++|+.||.|++||+..++.+..+    .+|.+.|++++|+|+|.+|++|+ 
T Consensus       286 ~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-  363 (380)
T 3iz6_a          286 VYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS-  363 (380)
T ss_dssp             EECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEEC-
T ss_pred             EecccccccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEee-
Confidence            11111111122334589999999 7889999999999999999988887777    68999999999999999999999 


Q ss_pred             cCCeEEEEecccceee
Q 022019          286 KDPYILCWDLRKAVQV  301 (304)
Q Consensus       286 ~d~~i~vwd~~~~~~~  301 (304)
                      .|++|++|++...+++
T Consensus       364 ~D~~i~iW~~~~~~~i  379 (380)
T 3iz6_a          364 WDKNLKIWAFSGHRKI  379 (380)
T ss_dssp             TTSCEEEEECCSSSSC
T ss_pred             CCCCEEEEecCCCccc
Confidence            9999999999987665

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.1e-37  Score=248.30  Aligned_cols=212  Identities=21%  Similarity=0.344  Sum_probs=173.6

Q ss_pred             eeeeecCCCC-ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           52 QFRTSSIPNN-FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        52 ~~~~~~~h~~-~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      .+..+.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++....              .......|...|.+++|   
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~--------------~~~~~~~h~~~v~~~~~---   69 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC--------------KSVLSEGHQRTVRKVAW---   69 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE--------------EEEECSSCSSCEEEEEE---
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee--------------eeeeccccCCcEEEEEE---
Confidence            4557889988 99999999999999999999999999987542110              00112356788999988   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCe--eeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcc
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRD  207 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~  207 (304)
                          +|++++|++|+.|+.|++||+..+.  ....+..|..     .|.+++|+|++++|+++ .|+.|++||++.... 
T Consensus        70 ----sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~-  139 (345)
T 3fm0_A           70 ----SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHEN-----EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE-  139 (345)
T ss_dssp             ----CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEEECTTSC-
T ss_pred             ----CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCC-----CceEEEEeCCCCEEEEEECCCeEEEEECCCCCC-
Confidence                7799999999999999999998764  3445554443     89999999999999965 999999999976421 


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce--EeEEeccccCCeEEEEECCCCcEEEEeec
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRDGNYLYTGGR  285 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  285 (304)
                      ...    .....+|...|.+++|+| ++.+|++|+.|+.|++||.+.+.  +...+.+|...|++++|+|+|++|++++ 
T Consensus       140 ~~~----~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-  213 (345)
T 3fm0_A          140 YEC----VSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-  213 (345)
T ss_dssp             EEE----EEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-
T ss_pred             eEE----EEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-
Confidence            111    222367888899999999 77899999999999999998775  5578889999999999999999999999 


Q ss_pred             cCCeEEEEecc
Q 022019          286 KDPYILCWDLR  296 (304)
Q Consensus       286 ~d~~i~vwd~~  296 (304)
                      .|++|++|+..
T Consensus       214 ~D~~v~iW~~~  224 (345)
T 3fm0_A          214 DDRTVRIWRQY  224 (345)
T ss_dssp             TTSCEEEEEEE
T ss_pred             CCCeEEEeccc
Confidence            99999999974

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3e-37  Score=251.05  Aligned_cols=224  Identities=18%  Similarity=0.214  Sum_probs=172.0

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      +.+|++..........  ....+|.+.|++++|+|++++|++|+.||+|++||+.++....                 ..
T Consensus       117 v~lWd~~~~~~~~~~~--~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~-----------------~~  177 (357)
T 4g56_B          117 VELWEILEKESLLVNK--FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK-----------------SY  177 (357)
T ss_dssp             EEEC--------CCCC--EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEE-----------------EE
T ss_pred             EEEeeccccceeEEEe--eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE-----------------EE
Confidence            4566665554332211  2456899999999999999999999999999999998653321                 23


Q ss_pred             eecCCeEEEEeecCccceeCCCc-cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCC-cEEEEE-c
Q 022019          116 VTEGESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG-Y  192 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~-~  192 (304)
                      ..|...|.+++|       ++++ .++++++.||.|++||+++++....+....   +...+.+++|+|++ .+|++| .
T Consensus       178 ~~h~~~v~~v~~-------s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~---~~~~v~~v~~sp~~~~~la~g~~  247 (357)
T 4g56_B          178 NAHSSEVNCVAA-------CPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA---SDTIPTSVTWHPEKDDTFACGDE  247 (357)
T ss_dssp             CCCSSCEEEEEE-------CTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT---CCSCEEEEEECTTSTTEEEEEES
T ss_pred             cCCCCCEEEEEE-------ccCCCceeeeeccCCceEEEECCCCceeeeeeecc---ccccccchhhhhcccceEEEeec
Confidence            346678999888       5555 478999999999999999887765554322   22378999999975 567765 9


Q ss_pred             CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEE
Q 022019          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ  272 (304)
Q Consensus       193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~  272 (304)
                      |+.|++||++... .       .....+|...|++++|+|+++.+|++|+.|+.|+|||+++++++..+ +|...|++++
T Consensus       248 d~~i~~wd~~~~~-~-------~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~va  318 (357)
T 4g56_B          248 TGNVSLVNIKNPD-S-------AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVA  318 (357)
T ss_dssp             SSCEEEEESSCGG-G-------CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEE
T ss_pred             ccceeEEECCCCc-E-------eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEE
Confidence            9999999998632 1       11226678889999999977789999999999999999999887665 7999999999


Q ss_pred             ECC-CCcEEEEeeccCCeEEEEecccc
Q 022019          273 FSR-DGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       273 ~~~-~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      |+| ++.+|++++ .||+|++|++.+.
T Consensus       319 fsP~d~~~l~s~s-~Dg~v~iW~~~~~  344 (357)
T 4g56_B          319 WSPLDHSKFTTVG-WDHKVLHHHLPSE  344 (357)
T ss_dssp             ECSSSTTEEEEEE-TTSCEEEEECC--
T ss_pred             EeCCCCCEEEEEc-CCCeEEEEECCCC
Confidence            998 799999999 9999999999664

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.7e-36  Score=261.31  Aligned_cols=245  Identities=14%  Similarity=0.216  Sum_probs=181.3

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcc--cc-------ccccccc
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY--DV-------NACSLAK  105 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~--~~-------~~~~~~~  105 (304)
                      .+..|++......      ..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++....  ..       ....+.+
T Consensus        40 ~v~l~~~~~~~~~------~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~  113 (611)
T 1nr0_A           40 SVYTVPVGSLTDT------EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS  113 (611)
T ss_dssp             EEEEEETTCSSCC------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT
T ss_pred             EEEEecCCCcccC------eEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECC
Confidence            3456666544333      3678999999999999999999999999999999986543211  00       0111111


Q ss_pred             cCCc--------------------cceEEEeecCCeEEEEeecCccceeCCCcc-EEEEEeCCCCEEEEEcCCCeeeEEe
Q 022019          106 DQDS--------------------YEASLVVTEGESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTY  164 (304)
Q Consensus       106 ~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  164 (304)
                      +...                    ........|...|.+++|       +|++. .|++|+.|++|++||..+++....+
T Consensus       114 dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f-------~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l  186 (611)
T 1nr0_A          114 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF-------KPSRPFRIISGSDDNTVAIFEGPPFKFKSTF  186 (611)
T ss_dssp             TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEE-------CSSSSCEEEEEETTSCEEEEETTTBEEEEEE
T ss_pred             CCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEE-------CCCCCeEEEEEeCCCeEEEEECCCCeEeeee
Confidence            1000                    000112235556666666       66775 6999999999999999988888777


Q ss_pred             ecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec
Q 022019          165 RAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY  243 (304)
Q Consensus       165 ~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  243 (304)
                      ..|..     .|.+++|+|++++|+++ .|++|++||+..+.. ...+........+|...|.+++|+| ++.+|++++.
T Consensus       187 ~~H~~-----~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~  259 (611)
T 1nr0_A          187 GEHTK-----FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASA  259 (611)
T ss_dssp             CCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEET
T ss_pred             ccccC-----ceEEEEECCCCCEEEEEECCCcEEEEECCCCcE-eeeeccccccccccCCCEEEEEECC-CCCEEEEEeC
Confidence            76654     89999999999999965 999999999876421 1111000011127889999999999 7889999999


Q ss_pred             CCeEEEEecCCceEeE-------------------------------------------EeccccCCeEEEEECCCCcEE
Q 022019          244 SQTSAIYREDNMELLY-------------------------------------------VLHGQEGGVTHVQFSRDGNYL  280 (304)
Q Consensus       244 dg~i~i~d~~~~~~~~-------------------------------------------~~~~~~~~v~~~~~~~~~~~l  280 (304)
                      |++|++||+++++++.                                           .+.+|...|++++|+|+|++|
T Consensus       260 D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l  339 (611)
T 1nr0_A          260 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL  339 (611)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEE
Confidence            9999999998776543                                           335788899999999999999


Q ss_pred             EEeeccCCeEEEEeccccee
Q 022019          281 YTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       281 ~~~~~~d~~i~vwd~~~~~~  300 (304)
                      ++++ .|++|++||+.+++.
T Consensus       340 ~s~s-~D~~v~~Wd~~~~~~  358 (611)
T 1nr0_A          340 FSAD-AEGHINSWDISTGIS  358 (611)
T ss_dssp             EEEE-TTSCEEEEETTTCCE
T ss_pred             EEEe-CCCcEEEEECCCCce
Confidence            9999 999999999988754

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.7e-36  Score=242.17  Aligned_cols=222  Identities=18%  Similarity=0.358  Sum_probs=174.3

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccc----c-------ccccc-------ccCC------
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV----N-------ACSLA-------KDQD------  108 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~----~-------~~~~~-------~~~~------  108 (304)
                      ...+..|...|.+++|+|++++|++|+.|+.|++|++.+.......    .       ...+.       ...+      
T Consensus        90 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~w  169 (340)
T 1got_B           90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW  169 (340)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred             ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEE
Confidence            3467789999999999999999999999999999999765321100    0       00000       0000      


Q ss_pred             ----ccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC
Q 022019          109 ----SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT  184 (304)
Q Consensus       109 ----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  184 (304)
                          .........|...|.+++|       +|+++++++|+.||.|++||++++.....+..+..     .|.+++|+|+
T Consensus       170 d~~~~~~~~~~~~h~~~v~~~~~-------~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~-----~v~~v~~~p~  237 (340)
T 1got_B          170 DIETGQQTTTFTGHTGDVMSLSL-------APDTRLFVSGACDASAKLWDVREGMCRQTFTGHES-----DINAICFFPN  237 (340)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS-----CEEEEEECTT
T ss_pred             ECCCCcEEEEEcCCCCceEEEEE-------CCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC-----CEEEEEEcCC
Confidence                1111122234556666655       78999999999999999999999988888876654     8999999999


Q ss_pred             CcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc
Q 022019          185 GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (304)
Q Consensus       185 ~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  263 (304)
                      +++|+++ .|+.|++||++...    ......  ...+...|.+++|+| ++.+|++|+.||.|++||+.+++.+..+.+
T Consensus       238 ~~~l~s~s~d~~v~iwd~~~~~----~~~~~~--~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~  310 (340)
T 1got_B          238 GNAFATGSDDATCRLFDLRADQ----ELMTYS--HDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             SSEEEEEETTSCEEEEETTTTE----EEEEEC--CTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCcEEEEECCCCc----EEEEEc--cCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccCcEeeEeec
Confidence            9999965 99999999998642    111111  123445699999999 788999999999999999999999999999


Q ss_pred             ccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       264 ~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      |...|.+++|+|+|.+|++|+ .|+.|++||
T Consensus       311 h~~~v~~~~~s~dg~~l~s~s-~D~~i~iWd  340 (340)
T 1got_B          311 HDNRVSCLGVTDDGMAVATGS-WDSFLKIWN  340 (340)
T ss_dssp             CSSCEEEEEECTTSSCEEEEE-TTSCEEEEC
T ss_pred             CCCcEEEEEEcCCCCEEEEEc-CCccEEecC
Confidence            999999999999999999999 999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.5e-36  Score=243.42  Aligned_cols=207  Identities=20%  Similarity=0.318  Sum_probs=175.0

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ...+.+|.+.|.+++|+|++..|++++.||+|++||+.+++..                 .....|...|.++.|.|   
T Consensus       147 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~-----------------~~~~~h~~~v~~~~~~~---  206 (354)
T 2pbi_B          147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL-----------------QSFHGHGADVLCLDLAP---  206 (354)
T ss_dssp             CEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-----------------EEEECCSSCEEEEEECC---
T ss_pred             ceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE-----------------EEEcCCCCCeEEEEEEe---
Confidence            3466789999999999999999999999999999999865432                 13345667888888854   


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                        ++++++|++|+.||.|++||+++++....+..|..     .|.+++|+|++.+|+++ .|++|++||++...    ..
T Consensus       207 --~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~----~~  275 (354)
T 2pbi_B          207 --SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES-----DVNSVRYYPSGDAFASGSDDATCRLYDLRADR----EV  275 (354)
T ss_dssp             --CSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTE----EE
T ss_pred             --CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC-----CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc----EE
Confidence              45678999999999999999999998888876654     89999999999999965 99999999998631    11


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                      ....  ...+...+.+++|+| ++.+|++|+.|+.|++||+.+++++..+.+|...|++++|+|+|++|++|+ .|++|+
T Consensus       276 ~~~~--~~~~~~~~~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs-~D~~v~  351 (354)
T 2pbi_B          276 AIYS--KESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS-WDHTLR  351 (354)
T ss_dssp             EEEC--CTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEE-TTSEEE
T ss_pred             EEEc--CCCcccceeEEEEeC-CCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEc-CCCCEE
Confidence            1111  122344688999999 788999999999999999999999999999999999999999999999999 999999


Q ss_pred             EEe
Q 022019          292 CWD  294 (304)
Q Consensus       292 vwd  294 (304)
                      +|+
T Consensus       352 vW~  354 (354)
T 2pbi_B          352 VWA  354 (354)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1e-35  Score=237.88  Aligned_cols=212  Identities=23%  Similarity=0.401  Sum_probs=180.8

Q ss_pred             ceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      .....+.+|.+.|++++|+|++++|++|+.||.|++|++.++...                 .....|...|.+++|   
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~h~~~v~~~~~---   73 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----------------KTISGHKLGISDVAW---   73 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEE---
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc-----------------hhhccCCCceEEEEE---
Confidence            334478899999999999999999999999999999998755332                 133456678999888   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                          +|++++|++++.|+.|++||+.+++....+..+..     .|.++.|+|++++++++ .|+.|++||++...    
T Consensus        74 ----~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----  140 (312)
T 4ery_A           74 ----SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-----YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK----  140 (312)
T ss_dssp             ----CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEETTTCC----
T ss_pred             ----cCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE----
Confidence                77899999999999999999999998888876654     89999999999999965 99999999998642    


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-cccCCeEEEEECCCCcEEEEeeccCC
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDP  288 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~d~  288 (304)
                      ...    ....|..+|.+++|+| ++.+|++|+.||.|++||+++++.+..+. .+...+..++|+|++++|++++ .|+
T Consensus       141 ~~~----~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~  214 (312)
T 4ery_A          141 CLK----TLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDN  214 (312)
T ss_dssp             EEE----EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-TTT
T ss_pred             EEE----EecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-CCC
Confidence            111    2256778899999999 77899999999999999999998877764 4566899999999999999999 999


Q ss_pred             eEEEEecccceee
Q 022019          289 YILCWDLRKAVQV  301 (304)
Q Consensus       289 ~i~vwd~~~~~~~  301 (304)
                      .|++||+++++.+
T Consensus       215 ~i~iwd~~~~~~~  227 (312)
T 4ery_A          215 TLKLWDYSKGKCL  227 (312)
T ss_dssp             EEEEEETTTTEEE
T ss_pred             eEEEEECCCCcEE
Confidence            9999999988754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.8e-36  Score=241.36  Aligned_cols=217  Identities=22%  Similarity=0.395  Sum_probs=177.7

Q ss_pred             ceeeeecCCCCceeEEEE-----cC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEE
Q 022019           51 NQFRTSSIPNNFLKGIKW-----SP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD  124 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~-----s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  124 (304)
                      .....+.+|.+.|++++|     ++ ++.+|+||+.|++|++||+.+......          ..........|...|.+
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~----------~~~~~~~l~~h~~~V~~   81 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY----------FGIPHKALTGHNHFVSD   81 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB----------SEEEEEEECCCSSCEEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc----------cccccchhccCCCceEE
Confidence            345578899999999999     77 899999999999999999875432110          01112244567788999


Q ss_pred             EeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCC
Q 022019          125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR  203 (304)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~  203 (304)
                      ++|       +|++.++++++.|++|++||+++++....+..|..     .|.+++|+|++++|+++ .|+.|++||+..
T Consensus        82 ~~~-------~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R           82 LAL-------SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS-----EVYSVAFSPDNRQILSAGAEREIKLWNILG  149 (343)
T ss_dssp             EEE-------CSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCS-----CEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred             EEE-------CCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC-----cEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence            988       77899999999999999999999998888876655     89999999999999955 999999999973


Q ss_pred             CCccceeeeeeeccccccccceeEEEeecCC---------CcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEEC
Q 022019          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH---------TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS  274 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  274 (304)
                      .     . ........+|...+.+++|+|+.         +.++++++.||.|++||. .......+.+|...|.+++|+
T Consensus       150 ~-----~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s  222 (343)
T 2xzm_R          150 E-----C-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSIS  222 (343)
T ss_dssp             C-----E-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEEC
T ss_pred             C-----c-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEEC
Confidence            1     1 11112224678889999999943         268999999999999994 567778889999999999999


Q ss_pred             CCCcEEEEeeccCCeEEEEeccc
Q 022019          275 RDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       275 ~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      |+|++|++++ .||.|++||+.+
T Consensus       223 ~~g~~l~sgs-~dg~v~iwd~~~  244 (343)
T 2xzm_R          223 PNGKYIATGG-KDKKLLIWDILN  244 (343)
T ss_dssp             TTSSEEEEEE-TTCEEEEEESSC
T ss_pred             CCCCEEEEEc-CCCeEEEEECCC
Confidence            9999999999 999999999954

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8e-36  Score=236.79  Aligned_cols=212  Identities=17%  Similarity=0.261  Sum_probs=170.5

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.....               ........|...|.+++|.|.    
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---------------~~~~~l~gH~~~V~~v~~s~~----   64 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---------------KLIDTLTGHEGPVWRVDWAHP----   64 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB---------------CCCEEECCCSSCEEEEEECCG----
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc---------------EEEEEEccccCCeEEEEecCC----
Confidence            5779999999999999999999999999999999864211               112244567889999998431    


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCe--eeEEeecccccccccceEEEEECCC--CcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                       .++++|++|+.|++|++||+++++  ....+..+.     ..|.+++|+|+  +.+|+++ .|+.|++||++...... 
T Consensus        65 -~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~-----~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~-  137 (297)
T 2pm7_B           65 -KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS-----ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS-  137 (297)
T ss_dssp             -GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS-----SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-
T ss_pred             -CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC-----CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-
Confidence             147899999999999999998774  333444343     38999999997  7888855 99999999998642111 


Q ss_pred             eeeeeeccccccccceeEEEeecCC------------CcEEEEEecCCeEEEEecCCce----EeEEeccccCCeEEEEE
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTH------------TGMLAIGSYSQTSAIYREDNME----LLYVLHGQEGGVTHVQF  273 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~------------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~  273 (304)
                           .....+|...|.+++|+|+.            +.+|++|+.|+.|++||++++.    +...+.+|...|.+++|
T Consensus       138 -----~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~  212 (297)
T 2pm7_B          138 -----PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW  212 (297)
T ss_dssp             -----CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred             -----eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEE
Confidence                 11125688889999999942            4689999999999999998754    66788999999999999


Q ss_pred             CCCC---cEEEEeeccCCeEEEEecccc
Q 022019          274 SRDG---NYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       274 ~~~~---~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      +|++   .+|++++ .|++|++||++++
T Consensus       213 sp~~~~~~~las~s-~D~~v~iWd~~~~  239 (297)
T 2pm7_B          213 SPTVLLRSYMASVS-QDRTCIIWTQDNE  239 (297)
T ss_dssp             CCCCSSSEEEEEEE-TTSCEEEEEESST
T ss_pred             CCCCCCceEEEEEE-CCCcEEEEEeCCC
Confidence            9995   8999999 9999999999764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.8e-36  Score=244.57  Aligned_cols=235  Identities=13%  Similarity=0.188  Sum_probs=179.2

Q ss_pred             cCcc--eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCc
Q 022019           32 YTWP--LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS  109 (304)
Q Consensus        32 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  109 (304)
                      +.|.  +..|+.+......  .......+|...|++++|+|++. +++++.||+|+|||+.+++.....           
T Consensus        66 ~~wd~~v~~~~~~~~~~~~--~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~-----------  131 (357)
T 4g56_B           66 RTWGGSIWVFKDPEGAPNE--SLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVN-----------  131 (357)
T ss_dssp             SSCCEEEEEESSCC---CG--GGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCC-----------
T ss_pred             ccccCeEEEEECCCCCcce--eEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEE-----------
Confidence            5564  4556655443322  12224567999999999999985 556788999999999865432111           


Q ss_pred             cceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCc-EE
Q 022019          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KI  188 (304)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l  188 (304)
                        ......|...|.+++|       +|++++|++|+.|+.|++||+++++....+..+..     .|.+++|+|++. ++
T Consensus       132 --~~~~~~h~~~V~~v~~-------spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~-----~v~~v~~s~~~~~~~  197 (357)
T 4g56_B          132 --KFAKYEHDDIVKTLSV-------FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSS-----EVNCVAACPGKDTIF  197 (357)
T ss_dssp             --CEEECCCSSCEEEEEE-------CSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTCSSCE
T ss_pred             --eeccCCCCCCEEEEEE-------CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCC-----CEEEEEEccCCCcee
Confidence              1123356788999988       77999999999999999999999999888877665     899999999875 55


Q ss_pred             E-EEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCC
Q 022019          189 F-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG  267 (304)
Q Consensus       189 ~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  267 (304)
                      + ++.|+.|++||++.+....      ......+...+.+++|+|+++.+|++|+.|+.|++||+++++++..+.+|...
T Consensus       198 ~s~~~dg~v~~wd~~~~~~~~------~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~  271 (357)
T 4g56_B          198 LSCGEDGRILLWDTRKPKPAT------RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQN  271 (357)
T ss_dssp             EEEETTSCEEECCTTSSSCBC------BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSC
T ss_pred             eeeccCCceEEEECCCCceee------eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecccee
Confidence            5 4599999999998742211      11124456779999999977889999999999999999999999999999999


Q ss_pred             eEEEEECCCC-cEEEEeeccCCeEEEEecccceee
Q 022019          268 VTHVQFSRDG-NYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       268 v~~~~~~~~~-~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      |++++|+|++ ++|++++ .|++|+|||+++++.+
T Consensus       272 v~~l~~sp~~~~~lasgs-~D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          272 ITGLAYSYHSSPFLASIS-EDCTVAVLDADFSEVF  305 (357)
T ss_dssp             EEEEEECSSSSCCEEEEE-TTSCEEEECTTSCEEE
T ss_pred             EEEEEEcCCCCCEEEEEe-CCCEEEEEECCCCcEe
Confidence            9999999997 5788999 9999999999998764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-35  Score=238.41  Aligned_cols=212  Identities=19%  Similarity=0.355  Sum_probs=169.4

Q ss_pred             eeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE-ee-cCCeEEEEeecC
Q 022019           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV-VT-EGESVYDFCWFP  129 (304)
Q Consensus        52 ~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~  129 (304)
                      .+..+.+|.+.|++++|+|+  +|++|+.|++|++||+..+...               ..... .. |...|.+++|  
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~---------------~~~~~~~~~h~~~v~~v~~--   66 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT---------------LIDVLDETAHKKAIRSVAW--   66 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE---------------EEEEECTTCCCSCEEEEEE--
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE---------------EEEEEecCCccCCEEEEEE--
Confidence            45578899999999999987  9999999999999999753210               00111 22 6788999988  


Q ss_pred             ccceeCCCccEEEEEeCCCCEEEEEcCC-------CeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEc
Q 022019          130 HMSASDPTSCVFASTTRDHPIHLWDATT-------GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDV  201 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~  201 (304)
                           +|++++|++|+.|++|++||+..       .+....+..|.     ..|.+++|+|++++|+++ .|+.|++||+
T Consensus        67 -----sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~sp~g~~las~s~D~~v~iwd~  136 (330)
T 2hes_X           67 -----RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE-----NEVKGVAWSNDGYYLATCSRDKSVWIWET  136 (330)
T ss_dssp             -----CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC---------CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred             -----CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC-----CcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence                 77899999999999999999853       23344454444     389999999999999965 9999999999


Q ss_pred             CCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc--eEeEEeccccCCeEEEEECCC--C
Q 022019          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--ELLYVLHGQEGGVTHVQFSRD--G  277 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~--~  277 (304)
                      +..+........    ..+|...|.+++|+| ++.+|++|+.|+.|++||...+  +++..+.+|...|.+++|+|+  +
T Consensus       137 ~~~~~~~~~~~~----~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  211 (330)
T 2hes_X          137 DESGEEYECISV----LQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV  211 (330)
T ss_dssp             CTTCCCCEEEEE----ECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS
T ss_pred             cCCCCCeEEEEE----eccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe
Confidence            653332222222    367888999999999 7789999999999999998765  678899999999999999999  7


Q ss_pred             cEEEEeeccCCeEEEEecccc
Q 022019          278 NYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       278 ~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      .+|++++ .|++|++||++.+
T Consensus       212 ~~l~s~s-~D~~v~iw~~~~~  231 (330)
T 2hes_X          212 FRLCSGS-DDSTVRVWKYMGD  231 (330)
T ss_dssp             CEEEEEE-TTSCEEEEEEEEE
T ss_pred             eEEEEEe-CCCeEEEEEecCC
Confidence            7899999 9999999999764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.8e-36  Score=238.90  Aligned_cols=232  Identities=20%  Similarity=0.311  Sum_probs=176.1

Q ss_pred             hcHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccc
Q 022019           21 VTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA  100 (304)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~  100 (304)
                      +..+++.+...+.|....-+.      .....++.+.+|...|.+++|+|++++|++|+.|++|++||+.+++..     
T Consensus        32 ~l~s~s~D~~v~~W~~~~~~~------~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~-----  100 (319)
T 3frx_A           32 LLLSASRDKTLISWKLTGDDQ------KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY-----  100 (319)
T ss_dssp             EEEEEETTSEEEEEEEEEETT------EEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-----
T ss_pred             EEEEecCCccEEEecCCCCCc------cccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCee-----
Confidence            444556666666664322111      111334578899999999999999999999999999999999865321     


Q ss_pred             ccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEE
Q 022019          101 CSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA  180 (304)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~  180 (304)
                                  .....|...|.+++|       +|++.+|++|+.|++|++||++. .....+..+..     .|.++.
T Consensus       101 ------------~~~~~h~~~v~~~~~-------~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~-----~v~~~~  155 (319)
T 3frx_A          101 ------------QRFVGHKSDVMSVDI-------DKKASMIISGSRDKTIKVWTIKG-QCLATLLGHND-----WVSQVR  155 (319)
T ss_dssp             ------------EEEECCSSCEEEEEE-------CTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSS-----CEEEEE
T ss_pred             ------------EEEccCCCcEEEEEE-------cCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCC-----cEEEEE
Confidence                        234457788999988       77899999999999999999974 45555555443     899999


Q ss_pred             ECCCC------cEEEE-EcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC
Q 022019          181 FNPTG------TKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED  253 (304)
Q Consensus       181 ~~~~~------~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~  253 (304)
                      |+|.+      ..+++ +.|+.|++||++..        .......+|...|.+++|+| ++.+|++|+.||.|++||++
T Consensus       156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--------~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~  226 (319)
T 3frx_A          156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQF--------QIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLA  226 (319)
T ss_dssp             ECCC------CCEEEEEETTSCEEEEETTTT--------EEEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETT
T ss_pred             EccCCCCCCCccEEEEEeCCCEEEEEECCcc--------hhheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECC
Confidence            99854      36775 59999999999763        12222367889999999999 78899999999999999998


Q ss_pred             CceEeEEecc------------------------------------------------ccCCeEEEEECCCCcEEEEeec
Q 022019          254 NMELLYVLHG------------------------------------------------QEGGVTHVQFSRDGNYLYTGGR  285 (304)
Q Consensus       254 ~~~~~~~~~~------------------------------------------------~~~~v~~~~~~~~~~~l~~~~~  285 (304)
                      +++++..+..                                                |...+.+++|+|||++|++|+ 
T Consensus       227 ~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~-  305 (319)
T 3frx_A          227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY-  305 (319)
T ss_dssp             TTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE-
T ss_pred             CCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEee-
Confidence            7765544321                                                233577888888999898888 


Q ss_pred             cCCeEEEEecccc
Q 022019          286 KDPYILCWDLRKA  298 (304)
Q Consensus       286 ~d~~i~vwd~~~~  298 (304)
                      .||.|++||+.++
T Consensus       306 ~Dg~i~vWd~~t~  318 (319)
T 3frx_A          306 TDNVIRVWQVMTA  318 (319)
T ss_dssp             TTSCEEEEEEEEC
T ss_pred             cCceEEEEEEeec
Confidence            8999999988765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.1e-35  Score=236.80  Aligned_cols=223  Identities=19%  Similarity=0.333  Sum_probs=176.4

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+.+|.+.|++++|+|++++|++|+.||.|++||+.++....             ........|...|.+++|.|.    
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~----   68 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW-------------ELSDSWRAHDSSIVAIDWASP----   68 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-------------EEEEEEECCSSCEEEEEECCG----
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-------------eecceeccCCCcEEEEEEcCC----
Confidence            567999999999999999999999999999999998543211             112233457789999998431    


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCC---------eeeEEeecccccccccceEEEEECCC--CcEEEEE-cCCeEEEEEcC
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTG---------LLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVH  202 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~v~d~~  202 (304)
                       .++++|++++.||.|++||++++         +....+..+..     .|.+++|+|+  +.+++++ .|+.|++||++
T Consensus        69 -~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~  142 (351)
T 3f3f_A           69 -EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG-----SLYSVKFAPAHLGLKLACLGNDGILRLYDAL  142 (351)
T ss_dssp             -GGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred             -CCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCC-----ceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence             15889999999999999999886         33455554443     8999999999  9988865 99999999997


Q ss_pred             CCCccceee----------------------------------------------------eeeeccccccccceeEEEe
Q 022019          203 RPGRDFEKY----------------------------------------------------STLKGNKEGQAGIMSAIAF  230 (304)
Q Consensus       203 ~~~~~~~~~----------------------------------------------------~~~~~~~~~~~~~v~~~~~  230 (304)
                      .........                                                    ........+|...|.+++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  222 (351)
T 3f3f_A          143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW  222 (351)
T ss_dssp             STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE
T ss_pred             ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEE
Confidence            643211000                                                    0012234568889999999


Q ss_pred             ecCCC---cEEEEEecCCeEEEEecCCc----------------------------------------------eEeEEe
Q 022019          231 SPTHT---GMLAIGSYSQTSAIYREDNM----------------------------------------------ELLYVL  261 (304)
Q Consensus       231 ~p~~~---~~l~~~~~dg~i~i~d~~~~----------------------------------------------~~~~~~  261 (304)
                      +|+++   .+|++|+.||.|++||++.+                                              +++..+
T Consensus       223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (351)
T 3f3f_A          223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH  302 (351)
T ss_dssp             CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred             CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence            99432   79999999999999999864                                              677788


Q ss_pred             ccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          262 HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       262 ~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      .+|...|++++|+|++++|++++ .||.|++|++.+++.+
T Consensus       303 ~~h~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          303 DDHNGEVWSVSWNLTGTILSSAG-DDGKVRLWKATYSNEF  341 (351)
T ss_dssp             CTTSSCEEEEEECSSSCCEEEEE-TTSCEEEEEECTTSCE
T ss_pred             ecccccEEEEEEcCCCCEEEEec-CCCcEEEEecCcCcch
Confidence            89999999999999999999999 9999999999987543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.4e-35  Score=241.52  Aligned_cols=232  Identities=19%  Similarity=0.338  Sum_probs=180.0

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..|++.....      ...+.+|...|++++|+|++.+|++++.|++|++||+.++...                  .
T Consensus       146 ~i~iwd~~~~~~------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~------------------~  201 (393)
T 1erj_A          146 LIRIWDIENRKI------VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS------------------L  201 (393)
T ss_dssp             CEEEEETTTTEE------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE------------------E
T ss_pred             eEEEEECCCCcE------EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE------------------E
Confidence            455666655433      3477899999999999999999999999999999999865321                  2


Q ss_pred             EeecCCeEEEEeecCccceeCC-CccEEEEEeCCCCEEEEEcCCCeeeEEeeccc--ccccccceEEEEECCCCcEEEEE
Q 022019          115 VVTEGESVYDFCWFPHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYD--AVDEITAAFSVAFNPTGTKIFAG  191 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~  191 (304)
                      ...+...+..++|       +| ++++|++|+.||.|++||+++++....+....  ...|...|.+++|+|++++|+++
T Consensus       202 ~~~~~~~v~~~~~-------~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~  274 (393)
T 1erj_A          202 TLSIEDGVTTVAV-------SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG  274 (393)
T ss_dssp             EEECSSCEEEEEE-------CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEcCCCcEEEEE-------ECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE
Confidence            2334466777777       55 78999999999999999999988776653221  12345589999999999999965


Q ss_pred             -cCCeEEEEEcCCCCcccee----eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC
Q 022019          192 -YNKSVRVFDVHRPGRDFEK----YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG  266 (304)
Q Consensus       192 -~d~~i~v~d~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  266 (304)
                       .|+.|++||++........    .........+|...|.+++|+| ++.+|++|+.|+.|++||+++++++..+.+|..
T Consensus       275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~  353 (393)
T 1erj_A          275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN  353 (393)
T ss_dssp             ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC
Confidence             9999999999763221100    0111122357888899999999 778999999999999999999999999999999


Q ss_pred             CeEEEEECC------CCcEEEEeeccCCeEEEEecccce
Q 022019          267 GVTHVQFSR------DGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       267 ~v~~~~~~~------~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      .|.+++|++      ++.+|++|+ .||+|++|++.+.+
T Consensus       354 ~v~~v~~~~~~~~~p~~~~l~sgs-~Dg~i~iW~~~~~~  391 (393)
T 1erj_A          354 SVISVAVANGSSLGPEYNVFATGS-GDCKARIWKYKKIA  391 (393)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEE-TTSEEEEEEEEEC-
T ss_pred             CEEEEEecCCcCcCCCCCEEEEEC-CCCcEEECcccccC
Confidence            999999876      688999999 99999999997643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-34  Score=238.85  Aligned_cols=208  Identities=23%  Similarity=0.419  Sum_probs=168.7

Q ss_pred             CceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccE
Q 022019           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (304)
                      ..|++++|+|+|++|++|+.||.|++||+.+++.                 ......|...|.+++|       +|++.+
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~-----------------~~~~~~h~~~v~~~~~-------~p~~~~  179 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI-----------------VMILQGHEQDIYSLDY-------FPSGDK  179 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------------EEEECCCSSCEEEEEE-------CTTSSE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-----------------EEEEccCCCCEEEEEE-------cCCCCE
Confidence            3599999999999999999999999999975432                 1234456788999988       778999


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECC-CCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccc
Q 022019          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       141 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                      |++++.|++|++||+++++....+....      .+.+++|+| ++++++++ .|+.|++||+++.. ....+.......
T Consensus       180 l~s~s~d~~v~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~~~~~~  252 (393)
T 1erj_A          180 LVSGSGDRTVRIWDLRTGQCSLTLSIED------GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENESG  252 (393)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSS------CEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC------
T ss_pred             EEEecCCCcEEEEECCCCeeEEEEEcCC------CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-EEEeecccccCC
Confidence            9999999999999999998877665433      789999999 88999965 99999999998642 211111111222


Q ss_pred             cccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc------------eEeEEeccccCCeEEEEECCCCcEEEEeecc
Q 022019          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM------------ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK  286 (304)
Q Consensus       219 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  286 (304)
                      .+|...|.+++|+| ++.+|++|+.||.|++||+++.            .+...+.+|...|.+++|+|++.+|++++ .
T Consensus       253 ~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~  330 (393)
T 1erj_A          253 TGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-K  330 (393)
T ss_dssp             CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-T
T ss_pred             CCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-C
Confidence            56888999999999 7789999999999999998753            34567788999999999999999999999 9


Q ss_pred             CCeEEEEecccceee
Q 022019          287 DPYILCWDLRKAVQV  301 (304)
Q Consensus       287 d~~i~vwd~~~~~~~  301 (304)
                      |+.|++||+++++.+
T Consensus       331 D~~v~iwd~~~~~~~  345 (393)
T 1erj_A          331 DRGVLFWDKKSGNPL  345 (393)
T ss_dssp             TSEEEEEETTTCCEE
T ss_pred             CCeEEEEECCCCeEE
Confidence            999999999988765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.3e-36  Score=250.26  Aligned_cols=217  Identities=15%  Similarity=0.134  Sum_probs=172.5

Q ss_pred             ceeeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC
Q 022019           51 NQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (304)
                      .......+|...|+||+|+| ++++||+|+.||+|+|||+.++....               ......|...|.+++|+|
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~---------------~~~~~gH~~~V~~l~f~p  174 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT---------------FIKGIGAGGSITGLKFNP  174 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE---------------EECCCSSSCCCCEEEECS
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee---------------EEEccCCCCCEEEEEEeC
Confidence            34446678999999999999 67799999999999999997553211               111235778899999844


Q ss_pred             ccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccc
Q 022019          130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~  208 (304)
                      .      ++++|++|+.||+|++||++++........+.   ....+.+++|+|++.+|++| .||.|++||++..  . 
T Consensus       175 ~------~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~-  242 (435)
T 4e54_B          175 L------NTNQFYASSMEGTTRLQDFKGNILRVFASSDT---INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--E-  242 (435)
T ss_dssp             S------CTTEEEEECSSSCEEEEETTSCEEEEEECCSS---CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--B-
T ss_pred             C------CCCEEEEEeCCCEEEEeeccCCceeEEeccCC---CCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--e-
Confidence            3      67899999999999999998765443332221   22367899999999999976 9999999998642  1 


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEE---eccccCCeEEEEECCCCcEEEEeec
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV---LHGQEGGVTHVQFSRDGNYLYTGGR  285 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~  285 (304)
                            .....+|...|.+++|+|++..++++|+.|+.|+|||+++.+....   ..+|...|++++|+|+|.+|++++ 
T Consensus       243 ------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-  315 (435)
T 4e54_B          243 ------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-  315 (435)
T ss_dssp             ------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-
T ss_pred             ------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-
Confidence                  1223678889999999997777999999999999999988764433   357899999999999999999999 


Q ss_pred             cCCeEEEEecccceee
Q 022019          286 KDPYILCWDLRKAVQV  301 (304)
Q Consensus       286 ~d~~i~vwd~~~~~~~  301 (304)
                      .||.|++||+++++.+
T Consensus       316 ~D~~i~iwd~~~~~~~  331 (435)
T 4e54_B          316 QKSEIRVYSASQWDCP  331 (435)
T ss_dssp             SSSCEEEEESSSSSSE
T ss_pred             CCCEEEEEECCCCccc
Confidence            9999999999987644

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.7e-35  Score=256.12  Aligned_cols=220  Identities=22%  Similarity=0.364  Sum_probs=185.0

Q ss_pred             eeeecCCCCceeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           53 FRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      ...+.+|.+.|++++|+|+ +++|+||+.||+|++|++.+.....            .........|...|.+++|    
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~------------~~~~~~~~~h~~~v~~v~~----  438 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY------------GVAQRRLTGHSHFVEDVVL----  438 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS------------CEEEEEEECCSSCEEEEEE----
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc------------ccccceecCCCCcEEEEEE----
Confidence            3468899999999999986 4799999999999999997543211            1112345567889999988    


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcccee
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~  210 (304)
                         +|++++|++|+.||+|++||+.++.....+..|..     .|.+++|+|++++|+++ .|++|++||+...     .
T Consensus       439 ---s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-----~  505 (694)
T 3dm0_A          439 ---SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK-----DVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-----C  505 (694)
T ss_dssp             ---CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSSCEEEEETTSCEEEECTTSC-----E
T ss_pred             ---CCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCC-----CEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-----c
Confidence               77999999999999999999999998888876665     89999999999999965 9999999998642     1


Q ss_pred             eeeeeccccccccceeEEEeecCC-CcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCe
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY  289 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~  289 (304)
                      ...+.....+|...|.+++|+|++ ...+++|+.|+.|++||++++++...+.+|.+.|++++|+|+|++|++++ .||.
T Consensus       506 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-~Dg~  584 (694)
T 3dm0_A          506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGV  584 (694)
T ss_dssp             EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSB
T ss_pred             ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCe
Confidence            123333346788889999999954 25899999999999999999999999999999999999999999999999 9999


Q ss_pred             EEEEecccceeee
Q 022019          290 ILCWDLRKAVQVV  302 (304)
Q Consensus       290 i~vwd~~~~~~~~  302 (304)
                      |++||+++++++.
T Consensus       585 i~iwd~~~~~~~~  597 (694)
T 3dm0_A          585 VLLWDLAEGKKLY  597 (694)
T ss_dssp             CEEEETTTTEEEE
T ss_pred             EEEEECCCCceEE
Confidence            9999999987653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3e-34  Score=227.76  Aligned_cols=214  Identities=18%  Similarity=0.258  Sum_probs=166.0

Q ss_pred             eeeecCCCCceeEEEEcC--CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           53 FRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      +..+.+|.+.|++++|+|  ++++|++|+.||+|++||+.++...               .......|...|.+++|.|.
T Consensus        46 ~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~---------------~~~~~~~h~~~v~~v~~~p~  110 (297)
T 2pm7_B           46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS---------------QIAVHAVHSASVNSVQWAPH  110 (297)
T ss_dssp             CEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC---------------CCEEECCCSSCEEEEEECCG
T ss_pred             EEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE---------------EEEEeecCCCceeEEEeCcC
Confidence            447889999999999986  4899999999999999999754211               11123346678999998442


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCee--eEEeecccccccccceEEEEECCC-------------CcEEEEE-cCC
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPT-------------GTKIFAG-YNK  194 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~i~~~~~-------------~~~l~~~-~d~  194 (304)
                           ..+.+|++++.|+.|++||++++..  ...+..+.     ..|.+++|+|+             +++|++| .|+
T Consensus       111 -----~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~-----~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~  180 (297)
T 2pm7_B          111 -----EYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA-----IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN  180 (297)
T ss_dssp             -----GGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS-----SCEEEEEECCCC------------CCEEEEEETTS
T ss_pred             -----CCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc-----CccceEeecCCcccccccCCCCCCcceEEEEcCCC
Confidence                 1278999999999999999987632  23334333     38999999997             4678855 999


Q ss_pred             eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCC--CcEEEEEecCCeEEEEecCCce---EeEEe--ccccCC
Q 022019          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH--TGMLAIGSYSQTSAIYREDNME---LLYVL--HGQEGG  267 (304)
Q Consensus       195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~i~d~~~~~---~~~~~--~~~~~~  267 (304)
                      .|++||++........    .....+|...|.+++|+|++  +.+|++|+.|+.|+|||++...   ....+  ..|...
T Consensus       181 ~v~lwd~~~~~~~~~~----~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~  256 (297)
T 2pm7_B          181 LVKIWKYNSDAQTYVL----ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV  256 (297)
T ss_dssp             CEEEEEEETTTTEEEE----EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC
T ss_pred             cEEEEEEcCCCceEEE----EEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCc
Confidence            9999999864322222    22336789999999999954  5899999999999999997642   12233  467889


Q ss_pred             eEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          268 VTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       268 v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      |.+++|+|+|++|++++ .|+.|++|+..
T Consensus       257 v~~~~~s~~g~~las~~-~D~~v~lw~~~  284 (297)
T 2pm7_B          257 LWRASWSLSGNVLALSG-GDNKVTLWKEN  284 (297)
T ss_dssp             EEEEEECSSSCCEEEEE-TTSCEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEc-CCCcEEEEEEC
Confidence            99999999999999999 99999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-34  Score=231.78  Aligned_cols=219  Identities=21%  Similarity=0.311  Sum_probs=160.5

Q ss_pred             eeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        52 ~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      .+..+.+|.+.|.+++|+|+|++|++|+.|++|++||+......             .........|...|.+++|    
T Consensus        99 ~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~-------------~~~~~~~~~h~~~v~~v~~----  161 (330)
T 2hes_X           99 LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE-------------YECISVLQEHSQDVKHVIW----  161 (330)
T ss_dssp             EEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC-------------CEEEEEECCCSSCEEEEEE----
T ss_pred             eEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC-------------eEEEEEeccCCCceEEEEE----
Confidence            45578899999999999999999999999999999999532110             0111234457788999988    


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCC--eeeEEeecccccccccceEEEEECCC--CcEEEEE-cCCeEEEEEcCCCCc
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVHRPGR  206 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~v~d~~~~~~  206 (304)
                         +|++.+|++++.|++|++||+.++  +....+..|..     .|.+++|+|+  +..|+++ .|++|++||++....
T Consensus       162 ---~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~  233 (330)
T 2hes_X          162 ---HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG-----TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE  233 (330)
T ss_dssp             ---CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred             ---CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC-----cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence               678999999999999999998876  45555655544     8999999998  6678855 999999999975321


Q ss_pred             cceeeeeeeccc-cccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce--EeEE-eccccC-CeEEEEECC--CCcE
Q 022019          207 DFEKYSTLKGNK-EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYV-LHGQEG-GVTHVQFSR--DGNY  279 (304)
Q Consensus       207 ~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~-~~~~~~-~v~~~~~~~--~~~~  279 (304)
                      ............ ..|...|.+++|+| ++ +|++++.||.|++||..+++  .... +.+|.. .|.+++|+|  ++++
T Consensus       234 ~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~  311 (330)
T 2hes_X          234 DDQQEWVCEAILPDVHKRQVYNVAWGF-NG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTI  311 (330)
T ss_dssp             TSCEEEEEEEECCSCCSSCEEEEEECT-TS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CC
T ss_pred             cccceeEEeeecccccccceEEEEEcC-CC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceE
Confidence            111111111112 23788899999998 55 78999999999999998763  3333 357877 899999999  7899


Q ss_pred             EEEeeccCCeEEEEecccc
Q 022019          280 LYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       280 l~~~~~~d~~i~vwd~~~~  298 (304)
                      |++|+ .||+|++||+++.
T Consensus       312 las~s-~Dg~v~~W~~~~~  329 (330)
T 2hes_X          312 LATGG-DDGIVNFWSLEKA  329 (330)
T ss_dssp             EEEEE-TTSEEEEEEC---
T ss_pred             EEEec-CCCcEEEEEeccC
Confidence            99999 9999999998753

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2e-35  Score=236.52  Aligned_cols=212  Identities=15%  Similarity=0.271  Sum_probs=165.5

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++..               ........|...|.+++|.|.    
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------~~~~~l~gH~~~V~~v~~~~~----   68 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------ILIADLRGHEGPVWQVAWAHP----   68 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------EEEEEEECCSSCEEEEEECCG----
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------EEEEEEcCCCccEEEEEeCCC----
Confidence            4678999999999999999999999999999999874321               011234567889999998431    


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCe--eeEEeecccccccccceEEEEECCC--CcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                       .++++|++|+.|++|++||+++++  ....+..|.     ..|.+++|+|+  +.+|+++ .|+.|++||++....   
T Consensus        69 -~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~-----~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~---  139 (316)
T 3bg1_A           69 -MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD-----SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ---  139 (316)
T ss_dssp             -GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS-----SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC---
T ss_pred             -CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC-----CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC---
Confidence             147899999999999999998874  334444443     38999999998  7788866 999999999976321   


Q ss_pred             eeeeeeccccccccceeEEEeecCC----------------CcEEEEEecCCeEEEEecCCc---eEeEEeccccCCeEE
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTH----------------TGMLAIGSYSQTSAIYREDNM---ELLYVLHGQEGGVTH  270 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~----------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~  270 (304)
                        ........+|...+.+++|+|+.                +.+|++|+.|+.|++||++..   +++..+.+|...|.+
T Consensus       140 --~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~  217 (316)
T 3bg1_A          140 --WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD  217 (316)
T ss_dssp             --EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEE
T ss_pred             --cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEE
Confidence              11123346788889999999942                368999999999999999754   577888999999999


Q ss_pred             EEECCCC----cEEEEeeccCCeEEEEeccc
Q 022019          271 VQFSRDG----NYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       271 ~~~~~~~----~~l~~~~~~d~~i~vwd~~~  297 (304)
                      ++|+|++    .+|++++ .|++|++|++++
T Consensus       218 v~~sp~~~~~~~~las~s-~D~~v~iw~~~~  247 (316)
T 3bg1_A          218 VAWAPSIGLPTSTIASCS-QDGRVFIWTCDD  247 (316)
T ss_dssp             EECCCCSSCSCCEEEEEE-TTCEEEEEECSS
T ss_pred             EEecCCCCCCCceEEEEc-CCCeEEEEEccC
Confidence            9999987    7899999 999999999876

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.8e-34  Score=235.28  Aligned_cols=206  Identities=13%  Similarity=0.160  Sum_probs=162.0

Q ss_pred             cCCCCceeEEEEcCCCCeEEE--ecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           57 SIPNNFLKGIKWSPDGSSFLT--SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        57 ~~h~~~V~~i~~s~~~~~l~s--~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      ..+...+.+++|||||+++++  ++.|++|+|||+.++...                  ....+...|.+++|       
T Consensus       130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~------------------~~~~~~~~V~~v~f-------  184 (365)
T 4h5i_A          130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK------------------FEIETRGEVKDLHF-------  184 (365)
T ss_dssp             CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE------------------EEEECSSCCCEEEE-------
T ss_pred             CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE------------------EEeCCCCceEEEEE-------
Confidence            445677999999999998764  457999999999865332                  23346677888877       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCC----eEEEEEcCCCCccce
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK----SVRVFDVHRPGRDFE  209 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~----~i~v~d~~~~~~~~~  209 (304)
                      +|+|+++++++.+ .+.+|+..++.........   .+...|.+++|+|++++++++ .|+    .+++|++........
T Consensus       185 spdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~---~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~  260 (365)
T 4h5i_A          185 STDGKVVAYITGS-SLEVISTVTGSCIARKTDF---DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL  260 (365)
T ss_dssp             CTTSSEEEEECSS-CEEEEETTTCCEEEEECCC---CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE
T ss_pred             ccCCceEEeccce-eEEEEEeccCcceeeeecC---CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce
Confidence            8899999999855 5777777777665433321   233389999999999999954 665    688888865322111


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEe-ccccCCeEEEEECCCCcEEEEeeccCC
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HGQEGGVTHVQFSRDGNYLYTGGRKDP  288 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~d~  288 (304)
                      .    .....+|...|++++|+| ++.+|++|+.|+.|+|||+++++++..+ .+|...|++++|+|||++|++++ .|+
T Consensus       261 ~----~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S-~D~  334 (365)
T 4h5i_A          261 R----SKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS-AAN  334 (365)
T ss_dssp             E----EEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE-TTS
T ss_pred             e----eeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe-CCC
Confidence            1    122356778899999999 7889999999999999999999999885 78999999999999999999999 999


Q ss_pred             eEEEEeccc
Q 022019          289 YILCWDLRK  297 (304)
Q Consensus       289 ~i~vwd~~~  297 (304)
                      +|+|||+..
T Consensus       335 tvrvw~ip~  343 (365)
T 4h5i_A          335 TIHIIKLPL  343 (365)
T ss_dssp             EEEEEECCT
T ss_pred             eEEEEEcCC
Confidence            999999964

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1e-33  Score=228.78  Aligned_cols=216  Identities=22%  Similarity=0.359  Sum_probs=181.0

Q ss_pred             eeecCCCCceeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           54 RTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      .+++||.+.|++|+|+|+ +++|+||+.||+|+|||+.+.+....            ........|...|.+++|     
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~------------~~~~~l~~h~~~V~~~~~-----   94 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG------------IPQRALRGHSHFVSDVVI-----   94 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE------------EEEEEECCCSSCEEEEEE-----
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc------------eeeEEEeCCCCCEEEEEE-----
Confidence            478999999999999997 68999999999999999986543211            112234557788999988     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                        +|++++|++++.|+.|++|+............+..     .+..+.+++++.+++++ .|+.+++||+...       
T Consensus        95 --s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~-------  160 (340)
T 4aow_A           95 --SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK-----DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-------  160 (340)
T ss_dssp             --CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSSCEEEEETTSCEEEECTTSC-------
T ss_pred             --CCCCCEEEEEcccccceEEeecccceeeeecCCCC-----ceeEEEEeecCccceeecCCCeEEEEEeCCC-------
Confidence              77999999999999999999998887776665544     77889999999999965 9999999998753       


Q ss_pred             eeeeccccccccceeEEEeecCC-CcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeE
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI  290 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i  290 (304)
                      ........+|...+..++|+++. ..++++++.|+.|++||+++++++..+.+|...|++++|+|++++|++++ .||.|
T Consensus       161 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~Dg~i  239 (340)
T 4aow_A          161 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQA  239 (340)
T ss_dssp             EEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTCEE
T ss_pred             ceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe-CCCeE
Confidence            22223336778889999999854 35788999999999999999999999999999999999999999999999 99999


Q ss_pred             EEEecccceee
Q 022019          291 LCWDLRKAVQV  301 (304)
Q Consensus       291 ~vwd~~~~~~~  301 (304)
                      ++||+++++.+
T Consensus       240 ~iwd~~~~~~~  250 (340)
T 4aow_A          240 MLWDLNEGKHL  250 (340)
T ss_dssp             EEEETTTTEEE
T ss_pred             EEEEeccCcee
Confidence            99999988765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.6e-34  Score=231.39  Aligned_cols=222  Identities=19%  Similarity=0.335  Sum_probs=169.2

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ...+.+|.+.|.+++|+|++++|++|+.|++|++||+.+....              ........|...|.+++|     
T Consensus        98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~--------------~~~~~~~~h~~~v~~~~~-----  158 (345)
T 3fm0_A           98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY--------------ECVSVLNSHTQDVKHVVW-----  158 (345)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE--------------EEEEEECCCCSCEEEEEE-----
T ss_pred             EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe--------------EEEEEecCcCCCeEEEEE-----
Confidence            4578899999999999999999999999999999999754221              111233456778999888     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeee--EEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                        +|++.+|++++.|+.|++||+++++..  ..+..|.     ..|.+++|+|++++|+++ .|++|++||.........
T Consensus       159 --~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~-----~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~  231 (345)
T 3fm0_A          159 --HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHE-----STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG  231 (345)
T ss_dssp             --CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCS-----SCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC
T ss_pred             --CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCC-----CceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc
Confidence              778999999999999999999887643  3444444     389999999999999965 999999999754322110


Q ss_pred             --------eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce---------EeEEeccccCCeEEEE
Q 022019          210 --------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---------LLYVLHGQEGGVTHVQ  272 (304)
Q Consensus       210 --------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~v~~~~  272 (304)
                              ....+......|...|.+++|+| .+..|++++.|+.|++|+.....         ......+|...|++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  310 (345)
T 3fm0_A          232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA  310 (345)
T ss_dssp             CCCC---CEEEEEEEECSSCSSCEEEEEECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEE
T ss_pred             ceeeccCCccceeEEecCCCCCcEEEEEEec-CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeE
Confidence                    00111111123778899999999 67789999999999999986542         1223458999999999


Q ss_pred             ECCCCc-EEEEeeccCCeEEEEecccceeee
Q 022019          273 FSRDGN-YLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       273 ~~~~~~-~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      |+|++. +|++++ .||+|++|++.+++.+.
T Consensus       311 ~~p~~~~~laS~s-~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          311 WNPKEPGLLASCS-DDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             ECSSSTTEEEEEE-TTSCEEEEEECC-----
T ss_pred             EeCCCceEEEEcC-CCCcEEEEEecCCCCcc
Confidence            999984 899999 99999999999887653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.6e-33  Score=223.94  Aligned_cols=222  Identities=20%  Similarity=0.321  Sum_probs=179.1

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      +..|+......      ...+.+|...|.+++|+|++++|++|+.||.|++||+.++...                 ...
T Consensus        47 i~iw~~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~-----------------~~~  103 (312)
T 4ery_A           47 IKIWGAYDGKF------EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL-----------------KTL  103 (312)
T ss_dssp             EEEEETTTCCE------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-----------------EEE
T ss_pred             EEEEeCCCccc------chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEE-----------------EEE
Confidence            44555544432      2367899999999999999999999999999999999865332                 133


Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCC
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK  194 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~  194 (304)
                      ..|...|.++.|       +|++++|++++.||.|++||+++++....+..+..     .|.+++|+|++++++++ .|+
T Consensus       104 ~~~~~~v~~~~~-------~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~  171 (312)
T 4ery_A          104 KGHSNYVFCCNF-------NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD-----PVSAVHFNRDGSLIVSSSYDG  171 (312)
T ss_dssp             ECCSSCEEEEEE-------CSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTS
T ss_pred             cCCCCCEEEEEE-------cCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC-----cEEEEEEcCCCCEEEEEeCCC
Confidence            446678888887       77899999999999999999999988887776654     89999999999999965 999


Q ss_pred             eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCe---EEE
Q 022019          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV---THV  271 (304)
Q Consensus       195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v---~~~  271 (304)
                      .|++||++....    ...+   ...+...+..++|+| ++.+|++++.||.|++||+++++++..+.+|....   ...
T Consensus       172 ~i~~wd~~~~~~----~~~~---~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  243 (312)
T 4ery_A          172 LCRIWDTASGQC----LKTL---IDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN  243 (312)
T ss_dssp             CEEEEETTTCCE----EEEE---CCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEE
T ss_pred             cEEEEECCCCce----eeEE---eccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEE
Confidence            999999986421    1111   234566799999999 77899999999999999999999999998887643   233


Q ss_pred             EECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       272 ~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      ...+++.+|++|+ .||.|++||+++++.+
T Consensus       244 ~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~  272 (312)
T 4ery_A          244 FSVTGGKWIVSGS-EDNLVYIWNLQTKEIV  272 (312)
T ss_dssp             EECSSSCEEEECC-TTSCEEEEETTTCCEE
T ss_pred             EEeCCCcEEEEEC-CCCEEEEEECCCchhh
Confidence            3446789999999 9999999999988654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-33  Score=228.46  Aligned_cols=228  Identities=16%  Similarity=0.204  Sum_probs=183.9

Q ss_pred             CCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCe
Q 022019           42 PPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGES  121 (304)
Q Consensus        42 ~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (304)
                      +.............+.+|.+.|++++|+|++++|++++.||.|++||+.+++...                 ....|...
T Consensus        14 ~~~~~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-----------------~~~~h~~~   76 (369)
T 3zwl_B           14 ENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG-----------------TLDGHTGT   76 (369)
T ss_dssp             CCCCSSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE-----------------EECCCSSC
T ss_pred             cceEEeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh-----------------hhhhcCCc
Confidence            3333333334445789999999999999999999999999999999998654321                 23346688


Q ss_pred             EEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC-----Ce
Q 022019          122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-----KS  195 (304)
Q Consensus       122 v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d-----~~  195 (304)
                      |.+++|       +|++++|++++.||.|++||+.+++....+.. ..     .+.+++|+|++++++++ .+     +.
T Consensus        77 v~~~~~-------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~-----~v~~~~~~~~~~~l~~~~~~~~~~~g~  143 (369)
T 3zwl_B           77 IWSIDV-------DCFTKYCVTGSADYSIKLWDVSNGQCVATWKS-PV-----PVKRVEFSPCGNYFLAILDNVMKNPGS  143 (369)
T ss_dssp             EEEEEE-------CTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-SS-----CEEEEEECTTSSEEEEEECCBTTBCCE
T ss_pred             EEEEEE-------cCCCCEEEEEeCCCeEEEEECCCCcEEEEeec-CC-----CeEEEEEccCCCEEEEecCCccCCCCE
Confidence            999988       77899999999999999999999988887763 22     89999999999999965 77     99


Q ss_pred             EEEEEcCCCCccceeeee---eecccccccc--ceeEEEeecCCCcEEEEEecCCeEEEEecCC-ceEeEEeccccCCeE
Q 022019          196 VRVFDVHRPGRDFEKYST---LKGNKEGQAG--IMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVT  269 (304)
Q Consensus       196 i~v~d~~~~~~~~~~~~~---~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~  269 (304)
                      |++||++...........   .......+..  .+.+++|+| ++.+|++++.||.|++||+++ ..++..+..|...|.
T Consensus       144 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  222 (369)
T 3zwl_B          144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSIS  222 (369)
T ss_dssp             EEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEE
T ss_pred             EEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCcee
Confidence            999999864322111110   0011123333  799999999 788999999999999999998 788999999999999


Q ss_pred             EEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       270 ~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +++|+|++.+|++++ .|+.|++||+++++.+
T Consensus       223 ~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~  253 (369)
T 3zwl_B          223 DMQFSPDLTYFITSS-RDTNSFLVDVSTLQVL  253 (369)
T ss_dssp             EEEECTTSSEEEEEE-TTSEEEEEETTTCCEE
T ss_pred             EEEECCCCCEEEEec-CCceEEEEECCCCcee
Confidence            999999999999999 9999999999987654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.1e-33  Score=228.55  Aligned_cols=252  Identities=18%  Similarity=0.264  Sum_probs=178.8

Q ss_pred             hcHHhhccccccCcceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccc
Q 022019           21 VTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA  100 (304)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~  100 (304)
                      +..+++.|...+.|     ++....... ....+.+.+|.+.|.+++|+|+|++|++++.|+.|++|+............
T Consensus        53 ~l~S~s~D~~i~vW-----d~~~~~~~~-~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~  126 (340)
T 4aow_A           53 MILSASRDKTIIMW-----KLTRDETNY-GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVG  126 (340)
T ss_dssp             EEEEEETTSCEEEE-----EECCSSSCS-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEcCCCeEEEE-----ECCCCCccc-ceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecC
Confidence            34445555555544     444332211 123457889999999999999999999999999999999876543211110


Q ss_pred             cc-------ccc--------cCCc-----------cceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEE
Q 022019          101 CS-------LAK--------DQDS-----------YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWD  154 (304)
Q Consensus       101 ~~-------~~~--------~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  154 (304)
                      ..       ...        ..+.           ........+...+..++|.+     .+...++++++.|+.|++||
T Consensus       127 ~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~s~~~d~~i~i~d  201 (340)
T 4aow_A          127 HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSP-----NSSNPIIVSCGWDKLVKVWN  201 (340)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECS-----CSSSCEEEEEETTSCEEEEE
T ss_pred             CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEcc-----CCCCcEEEEEcCCCEEEEEE
Confidence            00       000        0000           00011122345566666533     33456889999999999999


Q ss_pred             cCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecC
Q 022019          155 ATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT  233 (304)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  233 (304)
                      +++++....+..+..     .|.+++|+|++++|+++ .|+.|++||++...    .+..+     .+...+.+++|+| 
T Consensus       202 ~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~----~~~~~-----~~~~~v~~~~~~~-  266 (340)
T 4aow_A          202 LANCKLKTNHIGHTG-----YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK----HLYTL-----DGGDIINALCFSP-  266 (340)
T ss_dssp             TTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTCEEEEEETTTTE----EEEEE-----ECSSCEEEEEECS-
T ss_pred             CCCCceeeEecCCCC-----cEEEEEECCCCCEEEEEeCCCeEEEEEeccCc----eeeee-----cCCceEEeeecCC-
Confidence            999998888876654     89999999999999965 99999999998641    12222     2335699999999 


Q ss_pred             CCcEEEEEecCCeEEEEecCCceEeEEec---------cccCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          234 HTGMLAIGSYSQTSAIYREDNMELLYVLH---------GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       234 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      ++. +++++.|+.|++||++.+..+..+.         +|...|++++|+|+|++|++|+ .||.|+|||+++|++
T Consensus       267 ~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          267 NRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY-TDNLVRVWQVTIGTR  340 (340)
T ss_dssp             SSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE-TTSCEEEEEEEC---
T ss_pred             CCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEeCCCcCC
Confidence            564 5567789999999999887766553         6788999999999999999999 999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.3e-33  Score=227.15  Aligned_cols=226  Identities=17%  Similarity=0.278  Sum_probs=169.9

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      +..|++.....      +..+.+|.+.|.+++|+|++++|++++.|++|++||+...... ...              ..
T Consensus       100 v~lwd~~~~~~------~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~-~~~--------------~~  158 (343)
T 2xzm_R          100 LRLWDLRTGTT------YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF-SSA--------------EK  158 (343)
T ss_dssp             EEEEETTSSCE------EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-ECC--------------TT
T ss_pred             EEEEECCCCcE------EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-eee--------------cc
Confidence            44566555433      3467899999999999999999999999999999998632110 000              00


Q ss_pred             eecCCeEEEEeecCcc---ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-
Q 022019          116 VTEGESVYDFCWFPHM---SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-  191 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-  191 (304)
                      ..|...+.+++|.|..   ..+.|.+.+|++++.||.|++||. ..+....+..|..     .|.+++|+|++++|+++ 
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~-----~v~~~~~s~~g~~l~sgs  232 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHES-----NVNHLSISPNGKYIATGG  232 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSS-----CEEEEEECTTSSEEEEEE
T ss_pred             cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccc-----cceEEEECCCCCEEEEEc
Confidence            1345678899887653   223455689999999999999994 4555566665544     89999999999999965 


Q ss_pred             cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeE--Eec-------
Q 022019          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY--VLH-------  262 (304)
Q Consensus       192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~-------  262 (304)
                      .|+.|++||++........        ..+...|.+++|+| ++.+++ ++.|+.|++||+.+++...  .+.       
T Consensus       233 ~dg~v~iwd~~~~~~~~~~--------~~~~~~v~~v~~sp-~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~  302 (343)
T 2xzm_R          233 KDKKLLIWDILNLTYPQRE--------FDAGSTINQIAFNP-KLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKA  302 (343)
T ss_dssp             TTCEEEEEESSCCSSCSEE--------EECSSCEEEEEECS-SSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGB
T ss_pred             CCCeEEEEECCCCccccee--------ecCCCcEEEEEECC-CCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhh
Confidence            9999999999643322211        11234599999999 666665 4568889999998765433  433       


Q ss_pred             ----cccCCeEEEEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          263 ----GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       263 ----~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                          +|...|.+++|+|+|++|++|+ .||.|++|+++++.
T Consensus       303 ~~~~~~~~~v~~~~~sp~g~~l~sg~-~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          303 EGQKGKNPQCTSLAWNALGKKLFAGF-TDGVIRTFSFETSA  342 (343)
T ss_dssp             TTBCCSCCCEEEEEECSSSCCEEEEE-TTSEEEEEEEEEEE
T ss_pred             hhhcCCCCceEEEEECCCCCeEEEec-CCceEEEEEEEccC
Confidence                6778899999999999999999 99999999998874

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.1e-33  Score=241.08  Aligned_cols=225  Identities=17%  Similarity=0.281  Sum_probs=171.5

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ...+.+|.+.|++++|+|+|++|++|+.|++|++||+.++...........          ....|...|.+++|     
T Consensus       183 ~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~----------~~~~h~~~V~~v~~-----  247 (611)
T 1nr0_A          183 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL----------KNVAHSGSVFGLTW-----  247 (611)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS----------SSCSSSSCEEEEEE-----
T ss_pred             eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccc----------cccccCCCEEEEEE-----
Confidence            447889999999999999999999999999999999886654322110000          01146788999988     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccc--------------------------------------cccccc
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD--------------------------------------AVDEIT  174 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------------------------------~~~~~~  174 (304)
                        +|++++|++++.|++|++||+.+++....+....                                      ..+|..
T Consensus       248 --spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~  325 (611)
T 1nr0_A          248 --SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK  325 (611)
T ss_dssp             --CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS
T ss_pred             --CCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC
Confidence              7799999999999999999999887766553210                                      013556


Q ss_pred             ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcccee-------ee--------------------eee-----------
Q 022019          175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK-------YS--------------------TLK-----------  215 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~-------~~--------------------~~~-----------  215 (304)
                      .|.+++|+|++++|+++ .|+.|++||+.+.......       +.                    ...           
T Consensus       326 ~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~  405 (611)
T 1nr0_A          326 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKA  405 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSC
T ss_pred             CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccce
Confidence            89999999999999965 9999999998753210000       00                    000           


Q ss_pred             -------------c-----------------------cccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE--
Q 022019          216 -------------G-----------------------NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL--  257 (304)
Q Consensus       216 -------------~-----------------------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--  257 (304)
                                   .                       ....+...+.+++|+| ++.+|++|+.|+.|++||+..+..  
T Consensus       406 ~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~  484 (611)
T 1nr0_A          406 VANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSE  484 (611)
T ss_dssp             CEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEE
T ss_pred             eeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceee
Confidence                         0                       0001234578899999 788999999999999999987643  


Q ss_pred             eEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          258 LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       258 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      +.. .+|...|++++|+|+|++|++++ .|++|++|++.+
T Consensus       485 ~~~-~~h~~~v~~v~fspdg~~las~s-~d~~v~~w~~~~  522 (611)
T 1nr0_A          485 VKT-IVHPAEITSVAFSNNGAFLVATD-QSRKVIPYSVAN  522 (611)
T ss_dssp             EEE-EECSSCEEEEEECTTSSEEEEEE-TTSCEEEEEGGG
T ss_pred             eec-cCCCCceEEEEECCCCCEEEEEc-CCCCEEEEEcCC
Confidence            334 67999999999999999999999 999999999987

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-33  Score=229.18  Aligned_cols=214  Identities=18%  Similarity=0.272  Sum_probs=173.0

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ...+.+|.+.|++++|+|++++|++|+.||.|++||+....               .........|...|.+++|.+.  
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~h~~~v~~~~~~~~--   66 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------HKLIDTLTGHEGPVWRVDWAHP--   66 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---------------EEEEEEECCCSSCEEEEEECCG--
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc---------------ceeeeEecCCCCcEEEEEeCCC--
Confidence            34778999999999999999999999999999999986321               1111233457789999998331  


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCe--eeEEeecccccccccceEEEEECCC--CcEEEEE-cCCeEEEEEcCCCCcc
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVHRPGRD  207 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~v~d~~~~~~~  207 (304)
                         .++++|++++.||.|++||+.+++  ....+..+..     .|.+++|+|+  +.+++++ .|+.|++||++.....
T Consensus        67 ---~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  138 (379)
T 3jrp_A           67 ---KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA-----SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT  138 (379)
T ss_dssp             ---GGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC
T ss_pred             ---CCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCc-----ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce
Confidence               238899999999999999999887  4444444433     8999999999  8888865 9999999999874321


Q ss_pred             ceeeeeeeccccccccceeEEEeecC------------CCcEEEEEecCCeEEEEecCCce----EeEEeccccCCeEEE
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPT------------HTGMLAIGSYSQTSAIYREDNME----LLYVLHGQEGGVTHV  271 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~------------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~  271 (304)
                      ..  .    ....|...|.+++|+|.            ++.++++|+.||.|++||++.+.    ++..+.+|...|.++
T Consensus       139 ~~--~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~  212 (379)
T 3jrp_A          139 SP--I----IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV  212 (379)
T ss_dssp             CE--E----EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred             ee--E----EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEE
Confidence            11  1    12567788999999995            47799999999999999997653    566788999999999


Q ss_pred             EECCC---CcEEEEeeccCCeEEEEecccc
Q 022019          272 QFSRD---GNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       272 ~~~~~---~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      +|+|+   +.+|++++ .||.|++||++++
T Consensus       213 ~~sp~~~~~~~l~s~~-~dg~i~iwd~~~~  241 (379)
T 3jrp_A          213 AWSPTVLLRSYLASVS-QDRTCIIWTQDNE  241 (379)
T ss_dssp             EECCCCSSSEEEEEEE-TTSCEEEEEESST
T ss_pred             EECCCCCCCCeEEEEe-CCCEEEEEeCCCC
Confidence            99999   89999999 9999999999986

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.1e-32  Score=229.19  Aligned_cols=237  Identities=15%  Similarity=0.290  Sum_probs=170.8

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccc----------
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK----------  105 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~----------  105 (304)
                      +++|+...+....    +..+.+|.+.|++|+|+|+|++||+|+.||+|+|||+.+++.......+....          
T Consensus       127 V~lWd~~tg~~~~----~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l  202 (420)
T 4gga_A          127 VYLWSASSGDILQ----LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYIL  202 (420)
T ss_dssp             EEEEETTTCCEEE----EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEE
T ss_pred             EEEEECCCCCEEE----EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEE
Confidence            4455555543332    12456788999999999999999999999999999998876533322111000          


Q ss_pred             --------------cCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeee----EEeecc
Q 022019          106 --------------DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR----CTYRAY  167 (304)
Q Consensus       106 --------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~  167 (304)
                                    ............|...+..+.|       +|++.++++++.|+.+++|+..+++..    ..... 
T Consensus       203 ~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~-------~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~-  274 (420)
T 4gga_A          203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW-------APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ-  274 (420)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC-
T ss_pred             EEEeCCCceeEeeecccceeeEEecccccceeeeee-------cCCCCeeeeeeccccceEEeeccccccceeeeeecc-
Confidence                          0011111222334445555555       789999999999999999999876532    22332 


Q ss_pred             cccccccceEEEEECCCCc-EEEE--E-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEe-
Q 022019          168 DAVDEITAAFSVAFNPTGT-KIFA--G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-  242 (304)
Q Consensus       168 ~~~~~~~~v~~i~~~~~~~-~l~~--~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-  242 (304)
                          +...|.+++|+|.+. .+++  | .|++|++||++++.    ....+    . +...+.++.|+|+ +..+++++ 
T Consensus       275 ----~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~----~~~~~----~-~~~~v~~~~~~~~-~~~lv~~sg  340 (420)
T 4gga_A          275 ----HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----CLSAV----D-AHSQVCSILWSPH-YKELISGHG  340 (420)
T ss_dssp             ----CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE----EEEEE----E-CSSCEEEEEEETT-TTEEEEEEC
T ss_pred             ----cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc----cceee----c-cccceeeeeecCC-CCeEEEEEe
Confidence                334899999999764 4443  3 78999999998741    11221    1 2345889999994 55555544 


Q ss_pred             -cCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          243 -YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       243 -~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                       .|+.|+|||+.+++++.++.+|.+.|++++|+|+|++|++|+ .|++|++||+.+..
T Consensus       341 ~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s-~D~tvriWdv~~~~  397 (420)
T 4gga_A          341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA-ADETLRLWRCFELD  397 (420)
T ss_dssp             TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE-TTTEEEEECCSCSS
T ss_pred             cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCC
Confidence             789999999999999999999999999999999999999999 99999999997643

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=8e-33  Score=227.38  Aligned_cols=214  Identities=12%  Similarity=0.127  Sum_probs=172.9

Q ss_pred             ceeeeecCCCCceeEEEEcCCC-CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (304)
                      .....+.+|.+.|++++|+|++ ++|++|+.||.|++||+.++......               ....|...|.+++|  
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------------~~~~h~~~v~~~~~--  126 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI---------------QGMGPGDAITGMKF--  126 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE---------------CCCSTTCBEEEEEE--
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee---------------ecCCcCCceeEEEe--
Confidence            3455788999999999999998 89999999999999999865432111               01246789999998  


Q ss_pred             ccceeCC-CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcc
Q 022019          130 HMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRD  207 (304)
Q Consensus       130 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~  207 (304)
                           +| ++.+|++++.|+.|++||+.+ .....+..+.  .+...|.+++|+|++++++++ .|+.|++||++.  . 
T Consensus       127 -----~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~-  195 (383)
T 3ei3_B          127 -----NQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTD--SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG--H-  195 (383)
T ss_dssp             -----ETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCC--CSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS--C-
T ss_pred             -----CCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccC--CCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC--C-
Confidence                 55 678999999999999999986 4444444333  233479999999999999965 999999999953  1 


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC----ceEeEEeccccCCeEEEEECC-CCcEEEE
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN----MELLYVLHGQEGGVTHVQFSR-DGNYLYT  282 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  282 (304)
                        ....+    .+|...|.+++|+|++..+|++|+.|+.|++||+++    +.++..+ +|...|++++|+| ++.+|++
T Consensus       196 --~~~~~----~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~  268 (383)
T 3ei3_B          196 --EIFKE----KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLT  268 (383)
T ss_dssp             --EEEEE----ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEE
T ss_pred             --EEEEe----ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEE
Confidence              12222    567888999999995444999999999999999987    5666666 6999999999999 9999999


Q ss_pred             eeccCCeEEEEeccccee
Q 022019          283 GGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       283 ~~~~d~~i~vwd~~~~~~  300 (304)
                      ++ .|+.|++||+++++.
T Consensus       269 ~~-~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          269 TD-QRNEIRVYSSYDWSK  285 (383)
T ss_dssp             EE-SSSEEEEEETTBTTS
T ss_pred             Ec-CCCcEEEEECCCCcc
Confidence            99 999999999988754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.3e-33  Score=239.73  Aligned_cols=199  Identities=26%  Similarity=0.464  Sum_probs=168.8

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      +..+.+|...|.+++|+|+|++|++++.|+.|++||....                  .......|...|.+++|     
T Consensus       378 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~------------------~~~~~~~~~~~v~~~~~-----  434 (577)
T 2ymu_A          378 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ------------------LLQTLTGHSSSVWGVAF-----  434 (577)
T ss_dssp             EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCC------------------EEEEEECCSSCEEEEEE-----
T ss_pred             EEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC------------------EEEEecCCCCCeEEEEE-----
Confidence            4467889999999999999999999999999999996421                  11233456678888877     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                        +|++++|++++.|+.|++||+ +++....+..+..     .|.+++|+|++++|+++ .|+.|++||...  .   ..
T Consensus       435 --s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~-----~v~~~~~spd~~~las~~~d~~i~iw~~~~--~---~~  501 (577)
T 2ymu_A          435 --SPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-----SVRGVAFSPDGQTIASASDDKTVKLWNRNG--Q---LL  501 (577)
T ss_dssp             --CTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSS-----CEEEEEECTTSCEEEEEETTSEEEEEETTS--C---EE
T ss_pred             --CCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCC-----CEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--C---EE
Confidence              789999999999999999996 4566666665554     89999999999999965 999999999642  1   22


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                      ..    ..+|...|++++|+| ++.+|++++.||.|++||. +++++..+.+|...|++++|+|||++|++++ .|++|+
T Consensus       502 ~~----~~~h~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~-~D~~i~  574 (577)
T 2ymu_A          502 QT----LTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASAS-SDKTVK  574 (577)
T ss_dssp             EE----EECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSCEE
T ss_pred             EE----EeCCCCCEEEEEEcC-CCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCEEE
Confidence            22    267888999999999 7789999999999999996 6788999999999999999999999999999 999999


Q ss_pred             EEe
Q 022019          292 CWD  294 (304)
Q Consensus       292 vwd  294 (304)
                      +||
T Consensus       575 ~Wd  577 (577)
T 2ymu_A          575 LWN  577 (577)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            997

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=220.53  Aligned_cols=242  Identities=14%  Similarity=0.254  Sum_probs=173.4

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccc---------
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK---------  105 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~---------  105 (304)
                      .+.+|+....+....    ..+.+|...|++++|+|++++|++|+.||+|++||+.+++.......+....         
T Consensus        46 tV~iWd~~tg~~~~~----~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~  121 (318)
T 4ggc_A           46 SVYLWSASSGDILQL----LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYI  121 (318)
T ss_dssp             EEEEEETTTCCEEEE----EECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTE
T ss_pred             EEEEEECCCCCEEEE----EEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCE
Confidence            356777776654431    2456789999999999999999999999999999999876543322111000         


Q ss_pred             ---------------cCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccccc
Q 022019          106 ---------------DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV  170 (304)
Q Consensus       106 ---------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  170 (304)
                                     ............|...+..+.+       +++++++++++.||.|++||+++++......... .
T Consensus       122 l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~  193 (318)
T 4ggc_A          122 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW-------APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF-T  193 (318)
T ss_dssp             EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEE-C
T ss_pred             EEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE-------cCCCCEEEEEecCcceeEEECCCCcccccceeee-c
Confidence                           0011111222334444555544       7789999999999999999998765432211111 1


Q ss_pred             ccccceEEEEECCCCcEEE---EE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEE--ecC
Q 022019          171 DEITAAFSVAFNPTGTKIF---AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG--SYS  244 (304)
Q Consensus       171 ~~~~~v~~i~~~~~~~~l~---~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--~~d  244 (304)
                      .+...|.++.++|++..++   ++ .++.|++||.+.....    ..     ..+...+..+.|+|.+ ..++++  +.|
T Consensus       194 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----~~-----~~~~~~v~~~~~~~~~-~~~~~~sg~~d  263 (318)
T 4ggc_A          194 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SA-----VDAHSQVCSILWSPHY-KELISGHGFAQ  263 (318)
T ss_dssp             CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE----EE-----EECSSCEEEEEEETTT-TEEEEEECTTT
T ss_pred             ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc----cc-----ccceeeeeeeeecccc-cceEEEEEcCC
Confidence            2333889999999765443   34 7899999999764211    11     2345568899999954 455444  379


Q ss_pred             CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       245 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      +.|++||+++++++.++.+|.+.|++++|+|+|++|++|+ .||+|+|||+.+..
T Consensus       264 ~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s-~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA-ADETLRLWRCFELD  317 (318)
T ss_dssp             CCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE-TTTEEEEECCSCCC
T ss_pred             CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCC
Confidence            9999999999999999999999999999999999999999 99999999997653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-33  Score=250.82  Aligned_cols=210  Identities=10%  Similarity=0.102  Sum_probs=173.7

Q ss_pred             ecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC
Q 022019           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (304)
                      ..+|.+.|++++|+|++++||+|+.||+|+||+....+.                  .....+...|.+++|       +
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~------------------~~~~~~~~~V~~l~f-------s   67 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV------------------VIKLEDRSAIKEMRF-------V   67 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE------------------EEECSSCCCEEEEEE-------E
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE------------------EEEcCCCCCEEEEEE-------c
Confidence            458999999999999999999999999999999764321                  122335678999988       6


Q ss_pred             CCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeee-
Q 022019          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST-  213 (304)
Q Consensus       136 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~-  213 (304)
                      | +++|++++.|++|++||+.+++....+..+      ..|++++|+|+++++++| .||.|++||++....  ..+.. 
T Consensus        68 p-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~------~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~--~~~~i~  138 (902)
T 2oaj_A           68 K-GIYLVVINAKDTVYVLSLYSQKVLTTVFVP------GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL--SSFKLD  138 (902)
T ss_dssp             T-TTEEEEEETTCEEEEEETTTCSEEEEEECS------SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE--EEEEEC
T ss_pred             C-CCEEEEEECcCeEEEEECCCCcEEEEEcCC------CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc--ccceec
Confidence            6 669999999999999999999888777522      289999999999999976 999999999986421  10000 


Q ss_pred             -ee---ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccc------------------cCCeEEE
Q 022019          214 -LK---GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------------------EGGVTHV  271 (304)
Q Consensus       214 -~~---~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------~~~v~~~  271 (304)
                       ..   ....+|.++|.+++|+|+++..+++|+.||.| +||+++++++..+..|                  ...|+++
T Consensus       139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v  217 (902)
T 2oaj_A          139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQS  217 (902)
T ss_dssp             CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEE
T ss_pred             cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEE
Confidence             00   23367888999999999666789999999999 9999999998888765                  4679999


Q ss_pred             EECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       272 ~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +|+|+|.+|++++ .||.|++||+++++.+
T Consensus       218 ~fspdg~~lasgs-~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          218 LYHPNSLHIITIH-EDNSLVFWDANSGHMI  246 (902)
T ss_dssp             EECTTSSEEEEEE-TTCCEEEEETTTCCEE
T ss_pred             EEcCCCCEEEEEE-CCCeEEEEECCCCcEE
Confidence            9999999999999 9999999999988765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.6e-33  Score=224.24  Aligned_cols=216  Identities=18%  Similarity=0.256  Sum_probs=163.7

Q ss_pred             eeeecCCCCceeEEEEcC--CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           53 FRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      +..+.+|.+.|++++|+|  ++++|++|+.|++|++||+.++...               .......|...|.+++|.|.
T Consensus        50 ~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~---------------~~~~~~~h~~~V~~v~~~p~  114 (316)
T 3bg1_A           50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE---------------KSHEHAGHDSSVNSVCWAPH  114 (316)
T ss_dssp             EEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC---------------EEEEECCCSSCCCEEEECCT
T ss_pred             EEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce---------------EEEEccCCCCceEEEEECCC
Confidence            346789999999999986  4899999999999999998754211               11123346678899988441


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC-----------------CcEEEEE-c
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-----------------GTKIFAG-Y  192 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-----------------~~~l~~~-~  192 (304)
                           .++.+|++|+.|+.|++||++.+.........  ..|...|.+++|+|+                 +++|++| .
T Consensus       115 -----~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~  187 (316)
T 3bg1_A          115 -----DYGLILACGSSDGAISLLTYTGEGQWEVKKIN--NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGC  187 (316)
T ss_dssp             -----TTCSCEEEECSSSCEEEEEECSSSCEEECCBT--TSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBT
T ss_pred             -----CCCcEEEEEcCCCCEEEEecCCCCCcceeeee--ccccCCcceEEEccccCCccccccccccCccccceEEEecC
Confidence                 12789999999999999999876322111111  123347889999997                 3577755 9


Q ss_pred             CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCC---CcEEEEEecCCeEEEEecCCc---e-EeEEecccc
Q 022019          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH---TGMLAIGSYSQTSAIYREDNM---E-LLYVLHGQE  265 (304)
Q Consensus       193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~i~i~d~~~~---~-~~~~~~~~~  265 (304)
                      |+.|++||++... ...    ....+.+|...|.+++|+|++   +.+|++|+.||+|++||++..   . ....+..|.
T Consensus       188 D~~v~lWd~~~~~-~~~----~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~  262 (316)
T 3bg1_A          188 DNLIKLWKEEEDG-QWK----EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFN  262 (316)
T ss_dssp             TSBCCEEEECTTS-CEE----EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECS
T ss_pred             CCeEEEEEeCCCC-ccc----eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCC
Confidence            9999999996421 111    222346789999999999953   378999999999999998762   1 233456788


Q ss_pred             CCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       266 ~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      ..|.+++|+|+|++|++++ .|+.|++|+..
T Consensus       263 ~~v~~v~~sp~g~~las~~-~D~~v~lw~~~  292 (316)
T 3bg1_A          263 DVVWHVSWSITANILAVSG-GDNKVTLWKES  292 (316)
T ss_dssp             SCEEEEEECTTTCCEEEEE-SSSCEEEEEEC
T ss_pred             CcEEEEEEcCCCCEEEEEc-CCCeEEEEEEC
Confidence            9999999999999999999 99999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-32  Score=221.34  Aligned_cols=236  Identities=11%  Similarity=0.096  Sum_probs=180.8

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccc------ccccccCC
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA------CSLAKDQD  108 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~------~~~~~~~~  108 (304)
                      .+..|+.......      ..+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.......      ..+.....
T Consensus        55 ~i~vwd~~~~~~~------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  128 (369)
T 3zwl_B           55 SASVWYSLNGERL------GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGN  128 (369)
T ss_dssp             CEEEEETTTCCEE------EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSS
T ss_pred             EEEEEeCCCchhh------hhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCC
Confidence            4556666655433      37789999999999999999999999999999999987765333221      00000000


Q ss_pred             -------------ccceEEEee---------------------cCC--eEEEEeecCccceeCCCccEEEEEeCCCCEEE
Q 022019          109 -------------SYEASLVVT---------------------EGE--SVYDFCWFPHMSASDPTSCVFASTTRDHPIHL  152 (304)
Q Consensus       109 -------------~~~~~~~~~---------------------~~~--~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i  152 (304)
                                   .........                     +..  .+.+++       ++|++++|++++.||.|++
T Consensus       129 ~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~dg~i~i  201 (369)
T 3zwl_B          129 YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG-------WSTKGKYIIAGHKDGKISK  201 (369)
T ss_dssp             EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE-------ECGGGCEEEEEETTSEEEE
T ss_pred             EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE-------EcCCCCEEEEEcCCCEEEE
Confidence                         000111110                     001  344444       4789999999999999999


Q ss_pred             EEcCC-CeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEe
Q 022019          153 WDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF  230 (304)
Q Consensus       153 ~d~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  230 (304)
                      ||+++ ++....+..+..     .|.+++|+|++++|+++ .|+.|++||++...    ....+     .+...+..++|
T Consensus       202 ~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~----~~~~~-----~~~~~~~~~~~  267 (369)
T 3zwl_B          202 YDVSNNYEYVDSIDLHEK-----SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ----VLKKY-----ETDCPLNTAVI  267 (369)
T ss_dssp             EETTTTTEEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEEEE-----ECSSCEEEEEE
T ss_pred             EECCCCcEeEEEEecCCC-----ceeEEEECCCCCEEEEecCCceEEEEECCCCc----eeeee-----cCCCCceeEEe
Confidence            99998 677777776554     89999999999999965 99999999998742    11221     14567999999


Q ss_pred             ecCCCcEEEEEecCC--------------eEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          231 SPTHTGMLAIGSYSQ--------------TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       231 ~p~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      +| ++.++++++.++              .+++||..+++++..+.+|...|++++|+|++++|++++ .||.|++|+++
T Consensus       268 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~  345 (369)
T 3zwl_B          268 TP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGG-EDGFIRLHHFE  345 (369)
T ss_dssp             CS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEEC
T ss_pred             cC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEc-CCCeEEEEECc
Confidence            99 777888888888              899999999999999999999999999999999999999 99999999998


Q ss_pred             cce
Q 022019          297 KAV  299 (304)
Q Consensus       297 ~~~  299 (304)
                      ++.
T Consensus       346 ~~~  348 (369)
T 3zwl_B          346 KSY  348 (369)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.8e-32  Score=226.71  Aligned_cols=234  Identities=20%  Similarity=0.311  Sum_probs=178.4

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (304)
                      .+..|+.......  ...+..+.+|.+.|++++|+| ++.+|++|+.||+|++||+.++.......          ....
T Consensus        58 ~i~v~~~~~~~~~--~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~----------~~~~  125 (402)
T 2aq5_A           58 AFLVLPLGKTGRV--DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR----------EPVI  125 (402)
T ss_dssp             CEEEEETTCCEEC--CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC----------SCSE
T ss_pred             EEEEEECccCCCC--CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC----------CceE
Confidence            4455665433221  123346789999999999999 99999999999999999998764322111          1122


Q ss_pred             EEeecCCeEEEEeecCccceeCCCc-cEEEEEeCCCCEEEEEcCCCeeeEEe--ecccccccccceEEEEECCCCcEEEE
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTY--RAYDAVDEITAAFSVAFNPTGTKIFA  190 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~  190 (304)
                      ....|...|.+++|       +|++ .+|++++.||.|++||+++++....+  ..+..     .|.+++|+|++++|++
T Consensus       126 ~~~~h~~~v~~~~~-------~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~  193 (402)
T 2aq5_A          126 TLEGHTKRVGIVAW-------HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD-----TIYSVDWSRDGALICT  193 (402)
T ss_dssp             EEECCSSCEEEEEE-------CSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS-----CEEEEEECTTSSCEEE
T ss_pred             EecCCCCeEEEEEE-------CcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC-----ceEEEEECCCCCEEEE
Confidence            44567789999988       6676 69999999999999999999888777  44443     8999999999999996


Q ss_pred             E-cCCeEEEEEcCCCCccceeeeeeeccccccccc-eeEEEeecCCCcEEEEE---ecCCeEEEEecCCceE-eEEec-c
Q 022019          191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI-MSAIAFSPTHTGMLAIG---SYSQTSAIYREDNMEL-LYVLH-G  263 (304)
Q Consensus       191 ~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~-~  263 (304)
                      + .|+.|++||++...    ....+.   .+|... +.++.|+| ++.+|++|   +.|+.|++||+++++. +.... .
T Consensus       194 ~~~d~~i~iwd~~~~~----~~~~~~---~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~  265 (402)
T 2aq5_A          194 SCRDKRVRVIEPRKGT----VVAEKD---RPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD  265 (402)
T ss_dssp             EETTSEEEEEETTTTE----EEEEEE---CSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred             EecCCcEEEEeCCCCc----eeeeec---cCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence            5 99999999998741    111111   344444 88999999 78899998   7899999999988654 33333 4


Q ss_pred             ccCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       264 ~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      |...+.+++|+|++.+|++++..||.|++||+.+++.
T Consensus       266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence            6778999999999999975553799999999998763

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.4e-34  Score=235.85  Aligned_cols=208  Identities=16%  Similarity=0.176  Sum_probs=161.9

Q ss_pred             ecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCC--CccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG--ISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      ...|.++|++++|+|++++|++|+.||.|++||+.++.  ...                 ....|...|.+++|      
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~-----------------~~~~h~~~v~~~~~------   63 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR-----------------TFSDHDKIVTCVDW------   63 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC-----------------CBCCCSSCEEEEEE------
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE-----------------EEecCCceEEEEEE------
Confidence            44577899999999999999999999999999997542  111                 22346678999988      


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCe---eeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                       +|++++|++++.|+.|++||+.+++   ....+..+.     ..|.+++|+|++++|+++ .|+.|++||++.... ..
T Consensus        64 -s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~  136 (377)
T 3dwl_C           64 -APKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN-----RAATFVRWSPNEDKFAVGSGARVISVCYFEQEND-WW  136 (377)
T ss_dssp             -CTTTCCEEEEETTSSEEEC------CCCCEEECCCCS-----SCEEEEECCTTSSCCEEEESSSCEEECCC------CC
T ss_pred             -eCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccC-----CceEEEEECCCCCEEEEEecCCeEEEEEECCccc-ce
Confidence             7789999999999999999999876   344444333     389999999999999965 999999999986421 11


Q ss_pred             eeeeeeccccc-cccceeEEEeecCCCcEEEEEecCCeEEEEecC------------------CceEeEEeccccCCeEE
Q 022019          210 KYSTLKGNKEG-QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED------------------NMELLYVLHGQEGGVTH  270 (304)
Q Consensus       210 ~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~v~~  270 (304)
                      ....+    .. |...|.+++|+| ++.+|++|+.|+.|++||++                  .++++..+ +|...|++
T Consensus       137 ~~~~~----~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~  210 (377)
T 3dwl_C          137 VSKHL----KRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHA  210 (377)
T ss_dssp             CCEEE----CSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEE
T ss_pred             eeeEe----ecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEE
Confidence            11222    33 888999999999 77899999999999999985                  46677777 89999999


Q ss_pred             EEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       271 ~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      ++|+|+|++|++++ .||.|++||+++++.
T Consensus       211 ~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          211 VGFSPSGNALAYAG-HDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             EEECTTSSCEEEEE-TTTEEC-CEECSTTS
T ss_pred             EEECCCCCEEEEEe-CCCcEEEEECCCCCC
Confidence            99999999999999 999999999998865

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=239.00  Aligned_cols=214  Identities=12%  Similarity=0.091  Sum_probs=164.7

Q ss_pred             eecCCCCceeEEEEcCC------CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeec
Q 022019           55 TSSIPNNFLKGIKWSPD------GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF  128 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  128 (304)
                      .+.+|.+.|.+++|+|+      +.+||+++.||+|+|||+.++........      ...........|...|.+++|.
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~------~~~~p~~~l~~h~~~v~sv~~s  275 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK------MCEKPSLTLSLADSLITTFDFL  275 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE------CCCSCSEEECCTTTCEEEEEES
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce------eecCceEEEEcCCCCEEEEEec
Confidence            46678899999999996      57999999999999999986542110000      0000112334567889999984


Q ss_pred             CccceeCCCccEEEEEeCCCCEEEEEcCCCe-eeEEeecccccccccceEEE--EECCCC-cEEEE-EcCCeEEEEEcCC
Q 022019          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSV--AFNPTG-TKIFA-GYNKSVRVFDVHR  203 (304)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~i--~~~~~~-~~l~~-~~d~~i~v~d~~~  203 (304)
                             ++ ..|++|+.||+|++||++++. +...+..|..     .|.++  .|+|++ .+|++ +.|++|+|||++.
T Consensus       276 -------~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~-----~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~  342 (524)
T 2j04_B          276 -------SP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS-----YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD  342 (524)
T ss_dssp             -------SS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSS-----CEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred             -------CC-CeEEEEeCCCEEEEEECCCCCCceEEeecccc-----cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence                   33 379999999999999998764 3344555544     89999  578887 78885 4999999999976


Q ss_pred             CCccceeeeeeeccccccc--cceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEE
Q 022019          204 PGRDFEKYSTLKGNKEGQA--GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  281 (304)
                      ... .   ..+    .+|.  ..+.+++|+| ++..+++++.|+.|++||++++.++.++.+|.+.|++++|+|+|++|+
T Consensus       343 ~~~-~---~~~----~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~  413 (524)
T 2j04_B          343 IAT-T---KTT----VSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVL  413 (524)
T ss_dssp             HHH-H---CEE----EEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCE
T ss_pred             CCc-c---ccc----ccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEE
Confidence            311 1   111    2222  2478999999 677899999999999999999988888999999999999999999999


Q ss_pred             EeeccCCeEEEEeccc
Q 022019          282 TGGRKDPYILCWDLRK  297 (304)
Q Consensus       282 ~~~~~d~~i~vwd~~~  297 (304)
                      +|+ .||+|++||+..
T Consensus       414 Sgs-~Dgtv~lwd~~~  428 (524)
T 2j04_B          414 AGS-ADGSLIITNAAR  428 (524)
T ss_dssp             EEE-TTTEEECCBSCS
T ss_pred             EEE-CCCEEEEEechH
Confidence            999 999999999854

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-33  Score=230.00  Aligned_cols=241  Identities=12%  Similarity=0.183  Sum_probs=185.6

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (304)
                      .+..|++......  .+....+.+|.+.|++++|+|+ +.+|++++.||.|++||+.+..........        ....
T Consensus        90 ~v~vw~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--------~~~~  159 (416)
T 2pm9_A           90 SLELYSTNEANNA--INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP--------LTPG  159 (416)
T ss_dssp             CEEEECCSSTTSC--CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC--------BCCC
T ss_pred             eEEEeeccccccc--ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccc--------cccc
Confidence            3455665542111  1234477899999999999998 899999999999999999876521100000        0000


Q ss_pred             EEeecCCeEEEEeecCccceeCCC-ccEEEEEeCCCCEEEEEcCCCeeeEEeecccc-cccccceEEEEECCCC-cEEEE
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPT-SCVFASTTRDHPIHLWDATTGLLRCTYRAYDA-VDEITAAFSVAFNPTG-TKIFA  190 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~-~~l~~  190 (304)
                      ....+...+.+++|       +|+ +.+|++++.||.|++||+++++....+..+.. ..+...|.+++|+|++ .++++
T Consensus       160 ~~~~~~~~v~~~~~-------~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  232 (416)
T 2pm9_A          160 QSMSSVDEVISLAW-------NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT  232 (416)
T ss_dssp             CSCCSSCCCCEEEE-------CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred             cccCCCCCeeEEEe-------CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence            11245567888887       566 78999999999999999999988887776521 1113489999999997 57775


Q ss_pred             E-cCC---eEEEEEcCCCCccceeeeeeecccc-ccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc
Q 022019          191 G-YNK---SVRVFDVHRPGRDFEKYSTLKGNKE-GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE  265 (304)
Q Consensus       191 ~-~d~---~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  265 (304)
                      + .|+   .|++||++.......       ... +|...|.+++|+|+++.+|++++.||.|++||+++++++..+.+|.
T Consensus       233 ~~~d~~~~~i~~~d~~~~~~~~~-------~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~  305 (416)
T 2pm9_A          233 ATGSDNDPSILIWDLRNANTPLQ-------TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG  305 (416)
T ss_dssp             EECCSSSCCCCEEETTSTTSCSB-------CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS
T ss_pred             EECCCCCceEEEEeCCCCCCCcE-------EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC
Confidence            5 777   999999987432221       224 6888899999999677899999999999999999999999999999


Q ss_pred             CCeEEEEECCCC-cEEEEeeccCCeEEEEeccccee
Q 022019          266 GGVTHVQFSRDG-NYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       266 ~~v~~~~~~~~~-~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      ..|.+++|+|++ .+|++++ .|+.|++||+.+++.
T Consensus       306 ~~v~~~~~s~~~~~~l~s~~-~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          306 NWCFKTKFAPEAPDLFACAS-FDNKIEVQTLQNLTN  340 (416)
T ss_dssp             SCCCCEEECTTCTTEEEECC-SSSEEEEEESCCCCC
T ss_pred             CceEEEEECCCCCCEEEEEe-cCCcEEEEEccCCCC
Confidence            999999999999 8999999 999999999988754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.2e-32  Score=242.81  Aligned_cols=228  Identities=21%  Similarity=0.310  Sum_probs=177.9

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..|++....... ....+.+.+|.+.|.+++|+|++++|++|+.||+|+|||+.++..                 ...
T Consensus       406 ~i~~W~~~~~~~~~-~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~-----------------~~~  467 (694)
T 3dm0_A          406 SIILWKLTKDDKAY-GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS-----------------TRR  467 (694)
T ss_dssp             EEEEEECCCSTTCS-CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----------------EEE
T ss_pred             cEEEEEccCCCccc-ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc-----------------eeE
Confidence            34455554332211 122346889999999999999999999999999999999975432                 123


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCC--cEEEE-E
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFA-G  191 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~-~  191 (304)
                      ...|...|.+++|       +|++++|++++.|++|++||+...........  ...|...|.+++|+|++  ..+++ +
T Consensus       468 ~~~h~~~v~~~~~-------s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s  538 (694)
T 3dm0_A          468 FVGHTKDVLSVAF-------SLDNRQIVSASRDRTIKLWNTLGECKYTISEG--GEGHRDWVSCVRFSPNTLQPTIVSAS  538 (694)
T ss_dssp             EECCSSCEEEEEE-------CTTSSCEEEEETTSCEEEECTTSCEEEEECSS--TTSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             EeCCCCCEEEEEE-------eCCCCEEEEEeCCCEEEEEECCCCcceeeccC--CCCCCCcEEEEEEeCCCCcceEEEEe
Confidence            4567788999988       77899999999999999999875543322221  12345589999999986  46775 4


Q ss_pred             cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEE
Q 022019          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV  271 (304)
Q Consensus       192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~  271 (304)
                      .|+.|++||++..        .......+|...|++++|+| ++.+|++|+.||.|++||+++++++..+.. ...|.++
T Consensus       539 ~d~~v~vwd~~~~--------~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~  608 (694)
T 3dm0_A          539 WDKTVKVWNLSNC--------KLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHAL  608 (694)
T ss_dssp             TTSCEEEEETTTC--------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEE
T ss_pred             CCCeEEEEECCCC--------cEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEE
Confidence            9999999999863        12223367889999999999 788999999999999999999999888874 5679999


Q ss_pred             EECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       272 ~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +|+|++.+|++++  ++.|++||+++++.+
T Consensus       609 ~~sp~~~~l~~~~--~~~i~iwd~~~~~~~  636 (694)
T 3dm0_A          609 CFSPNRYWLCAAT--EHGIKIWDLESKSIV  636 (694)
T ss_dssp             EECSSSSEEEEEE--TTEEEEEETTTTEEE
T ss_pred             EEcCCCcEEEEEc--CCCEEEEECCCCCCh
Confidence            9999999888766  677999999988654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=222.79  Aligned_cols=236  Identities=12%  Similarity=0.169  Sum_probs=174.6

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEE------cCCCCeEEEecCCCeEEEeeCCCCCC-ccccccccccccC
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKW------SPDGSSFLTSSEDKTLRIFSLPENGI-SYDVNACSLAKDQ  107 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~------s~~~~~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~~  107 (304)
                      .+..|++.....     ....+.+|.+.|.+++|      +|++++|++++.||.|++||+.++.. ........     
T Consensus        91 ~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-----  160 (357)
T 3i2n_A           91 NLHIWNLEAPEM-----PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ-----  160 (357)
T ss_dssp             CEEEECTTSCSS-----CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT-----
T ss_pred             eEEEEeCCCCCc-----cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC-----
Confidence            455666665541     23367799999999955      68999999999999999999986642 11111100     


Q ss_pred             CccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECC---C
Q 022019          108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP---T  184 (304)
Q Consensus       108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---~  184 (304)
                              ......+.++.|.+   +++|+++++++++.||.|++||+++++...... +.     ..|.+++|+|   +
T Consensus       161 --------~~~~~~v~~~~~~~---~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~-----~~v~~~~~~~~~~~  223 (357)
T 3i2n_A          161 --------GENKRDCWTVAFGN---AYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-IK-----NGVCSLEFDRKDIS  223 (357)
T ss_dssp             --------TSCCCCEEEEEEEC---CCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-CS-----SCEEEEEESCSSSS
T ss_pred             --------CCCCCceEEEEEEe---ccCCCCCEEEEEccCCeEEEEECccCceeeecC-CC-----CceEEEEcCCCCCC
Confidence                    00123677777643   358899999999999999999999988754432 22     3899999999   8


Q ss_pred             CcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc--------
Q 022019          185 GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--------  255 (304)
Q Consensus       185 ~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~--------  255 (304)
                      +.+++++ .|+.|++||++.... ...+...  ...+|...|.+++|+|++..+|++|+.||.|++||++.+        
T Consensus       224 ~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  300 (357)
T 3i2n_A          224 MNKLVATSLEGKFHVFDMRTQHP-TKGFASV--SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS  300 (357)
T ss_dssp             CCEEEEEESTTEEEEEEEEEEET-TTEEEEE--EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCT
T ss_pred             CCEEEEECCCCeEEEEeCcCCCc-ccceeee--ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccC
Confidence            9999965 999999999976321 1111100  123688899999999944448999999999999998743        


Q ss_pred             -----------eEeEEeccccCCeEEEEECCCCcEEE-EeeccCCeEEEEecccceee
Q 022019          256 -----------ELLYVLHGQEGGVTHVQFSRDGNYLY-TGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       256 -----------~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~d~~i~vwd~~~~~~~  301 (304)
                                 +++..+.+|...|++++|+|+|++|+ +++ .||.|++||+.+.+.+
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~-~d~~i~iw~~~~~~~i  357 (357)
T 3i2n_A          301 EGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS-FDQTVRVLIVTKLNKI  357 (357)
T ss_dssp             TSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEE-TTSEEEEEEECC----
T ss_pred             CCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEec-CCCcEEEEECCCcccC
Confidence                       46778889999999999999999998 788 9999999999887653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.3e-32  Score=227.86  Aligned_cols=219  Identities=17%  Similarity=0.312  Sum_probs=174.4

Q ss_pred             ceeeeecCCCCceeEEEEcCCCC-eEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (304)
                      .....+.+|.+.|++++|+|++. +|++|+.||.|++|++..........          ........|...|.+++|.|
T Consensus       172 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----------~~~~~~~~h~~~v~~v~~~p  241 (430)
T 2xyi_A          172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI----------DAKNIFTGHTAVVEDVAWHL  241 (430)
T ss_dssp             CCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEE----------ECSEEECCCSSCEEEEEECS
T ss_pred             CCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCcee----------ccceeecCCCCCEeeeEEeC
Confidence            34557789999999999999988 99999999999999998643211100          00123346778899999844


Q ss_pred             ccceeCCCccEEEEEeCCCCEEEEEcCCC---eeeEEeecccccccccceEEEEECCCCc-EEEEE-cCCeEEEEEcCCC
Q 022019          130 HMSASDPTSCVFASTTRDHPIHLWDATTG---LLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFAG-YNKSVRVFDVHRP  204 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~v~d~~~~  204 (304)
                      .      ++.+|++++.||.|++||++++   +....+..+..     .|.+++|+|++. ++++| .||.|++||++..
T Consensus       242 ~------~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~  310 (430)
T 2xyi_A          242 L------HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA-----EVNCLSFNPYSEFILATGSADKTVALWDLRNL  310 (430)
T ss_dssp             S------CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS-----CEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred             C------CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC-----CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence            2      6779999999999999999976   45555554443     899999999987 56655 9999999999874


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC--------------ceEeEEeccccCCeEE
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--------------MELLYVLHGQEGGVTH  270 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--------------~~~~~~~~~~~~~v~~  270 (304)
                      ......       ...|...|.+++|+|++..+|++++.||.|+|||+..              ..++..+.+|...|++
T Consensus       311 ~~~~~~-------~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  383 (430)
T 2xyi_A          311 KLKLHS-------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD  383 (430)
T ss_dssp             TSCSEE-------EECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEE
T ss_pred             CCCeEE-------eecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceE
Confidence            332222       2457888999999996667899999999999999986              3677788899999999


Q ss_pred             EEECCCCc-EEEEeeccCCeEEEEecccc
Q 022019          271 VQFSRDGN-YLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       271 ~~~~~~~~-~l~~~~~~d~~i~vwd~~~~  298 (304)
                      ++|+|+++ +|++++ .||.|++|++.+.
T Consensus       384 ~~~~p~~~~~l~s~s-~dg~i~iw~~~~~  411 (430)
T 2xyi_A          384 FSWNPNEPWIICSVS-EDNIMQVWQMAEN  411 (430)
T ss_dssp             EEECSSSTTEEEEEE-TTSEEEEEEECHH
T ss_pred             EEECCCCCCEEEEEE-CCCCEEEeEcccc
Confidence            99999999 888998 9999999999764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.5e-32  Score=222.48  Aligned_cols=216  Identities=18%  Similarity=0.211  Sum_probs=176.4

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+..|.++|++++|+|++++|++++.||.|++||+.+++.               ........|...|.+++|       
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---------------~~~~~~~~h~~~v~~~~~-------   60 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------VQVHELKEHNGQVTGVDW-------   60 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---------------EEEEEEECCSSCEEEEEE-------
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE---------------EeeeeecCCCCcccEEEE-------
Confidence            3456999999999999999999999999999999875421               011233456788999988       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      +|++++|++++.||.|++||+.+++........   .+...|.+++|+|++++++++ .|+.|++||++.... ..   .
T Consensus        61 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-~~---~  133 (372)
T 1k8k_C           61 APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL---RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-WW---V  133 (372)
T ss_dssp             ETTTTEEEEEETTSCEEEEEEETTEEEEEEECC---CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-EE---E
T ss_pred             eCCCCEEEEEcCCCeEEEEECCCCeeeeeEEee---cCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc-ce---e
Confidence            668999999999999999999888765554322   223389999999999999965 999999999987432 11   1


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEec------------------CCceEeEEeccccCCeEEEEECC
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE------------------DNMELLYVLHGQEGGVTHVQFSR  275 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~------------------~~~~~~~~~~~~~~~v~~~~~~~  275 (304)
                      ......+|...|.+++|+| ++.+|++++.||.|++||+                  ..++++..+.+|...|.+++|+|
T Consensus       134 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  212 (372)
T 1k8k_C          134 CKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA  212 (372)
T ss_dssp             EEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred             eeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC
Confidence            1122256778899999999 7789999999999999995                  46788889999999999999999


Q ss_pred             CCcEEEEeeccCCeEEEEecccceee
Q 022019          276 DGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       276 ~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      ++.+|++++ .||.|++||+++++.+
T Consensus       213 ~~~~l~~~~-~d~~i~i~d~~~~~~~  237 (372)
T 1k8k_C          213 NGSRVAWVS-HDSTVCLADADKKMAV  237 (372)
T ss_dssp             SSSEEEEEE-TTTEEEEEEGGGTTEE
T ss_pred             CCCEEEEEe-CCCEEEEEECCCCcee
Confidence            999999999 9999999999988654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-33  Score=231.03  Aligned_cols=215  Identities=15%  Similarity=0.204  Sum_probs=161.9

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ...+.+|.+.|++++|+|++++|++++.||+|++||+.++...              ........|...|.+++|     
T Consensus        48 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~--------------~~~~~~~~~~~~v~~~~~-----  108 (377)
T 3dwl_C           48 ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW--------------KQTLVLLRLNRAATFVRW-----  108 (377)
T ss_dssp             CCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC--------------CCEEECCCCSSCEEEEEC-----
T ss_pred             EEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce--------------eeeeEecccCCceEEEEE-----
Confidence            3467799999999999999999999999999999999865410              011123456688999988     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCee---eEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccc
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~  208 (304)
                        +|++++|++++.|+.|++||+++++.   ...+..    .+...|.+++|+|++++|+++ .|+.|++||++......
T Consensus       109 --~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  182 (377)
T 3dwl_C          109 --SPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR----PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDA  182 (377)
T ss_dssp             --CTTSSCCEEEESSSCEEECCC-----CCCCEEECS----SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-
T ss_pred             --CCCCCEEEEEecCCeEEEEEECCcccceeeeEeec----ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCC
Confidence              77899999999999999999998763   444543    123489999999999999965 99999999996422110


Q ss_pred             e----------eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE----eEEeccccCCeEEEEEC
Q 022019          209 E----------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL----LYVLHGQEGGVTHVQFS  274 (304)
Q Consensus       209 ~----------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~  274 (304)
                      .          ......... +|...|.+++|+| ++.+|++++.||.|++||+++++.    +..+.+|...|.+++|+
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  260 (377)
T 3dwl_C          183 KPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWA  260 (377)
T ss_dssp             CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEE
T ss_pred             Cccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEc
Confidence            0          112233333 7888999999999 777999999999999999998876    78888999999999999


Q ss_pred             CCCcEEEEeeccCCeEEEEecc
Q 022019          275 RDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       275 ~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      |+|++|++++ .++.+ +|+..
T Consensus       261 ~~~~~l~~~~-~~~~~-~~~~~  280 (377)
T 3dwl_C          261 NESAIVAAGY-NYSPI-LLQGN  280 (377)
T ss_dssp             ETTEEEEEES-SSSEE-EECCC
T ss_pred             CCCCEEEEEc-CCcEE-EEEeC
Confidence            9999999887 66655 67665

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.1e-33  Score=228.99  Aligned_cols=244  Identities=16%  Similarity=0.179  Sum_probs=181.3

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCC----C---CeEEEecCCCeEEEeeCCCCCCccccccccccccC
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD----G---SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ  107 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~----~---~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~  107 (304)
                      .+..|+.........+.....+.+|...|++++|+|+    +   .+|++++.||.|++||+.++.....          
T Consensus        37 ~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~----------  106 (397)
T 1sq9_A           37 YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK----------  106 (397)
T ss_dssp             EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC----------
T ss_pred             EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc----------
Confidence            3455666555433333445577899999999999999    9   9999999999999999876543100          


Q ss_pred             CccceEEEeec-----CCeEEEEeecCccceeCCCccE-EEEEeCCCCEEEEEcCC------CeeeE-----Eeec--cc
Q 022019          108 DSYEASLVVTE-----GESVYDFCWFPHMSASDPTSCV-FASTTRDHPIHLWDATT------GLLRC-----TYRA--YD  168 (304)
Q Consensus       108 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~------~~~~~-----~~~~--~~  168 (304)
                        ........+     ...|.+++|.+..   .|++.+ |++++.||.|++||+.+      ++...     .+..  ..
T Consensus       107 --~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (397)
T 1sq9_A          107 --VIFEKLDLLDSDMKKHSFWALKWGASN---DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES  181 (397)
T ss_dssp             --EEEEEECCSCTTGGGSCEEEEEEECCC-------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECC
T ss_pred             --ccceeecccccccCCCcEEEEEEeecc---CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeecc
Confidence              001122233     3788999884110   068889 99999999999999988      55544     4432  00


Q ss_pred             ccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeecccccc---ccceeEEEeecCCCcEEEEEecC
Q 022019          169 AVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ---AGIMSAIAFSPTHTGMLAIGSYS  244 (304)
Q Consensus       169 ~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~l~~~~~d  244 (304)
                      ...+...|.+++|+|++ +++++ .|+.|++||++..    .....+.. ..+|   ...+.+++|+| ++.+|++++.|
T Consensus       182 ~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~----~~~~~~~~-~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d  254 (397)
T 1sq9_A          182 PMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL----RPLYNFES-QHSMINNSNSIRSVKFSP-QGSLLAIAHDS  254 (397)
T ss_dssp             SSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT----EEEEEEEC-CC---CCCCCEEEEEECS-STTEEEEEEEE
T ss_pred             ccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC----ceeEEEec-cccccccCCccceEEECC-CCCEEEEEecC
Confidence            01223489999999999 88866 9999999999863    11122211 0126   78899999999 67899999999


Q ss_pred             ---CeEEEEecCCceEeEEecc-------------ccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          245 ---QTSAIYREDNMELLYVLHG-------------QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       245 ---g~i~i~d~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                         |.|++||+++++++..+.+             |...|.+++|+|++++|++++ .||.|++||+++++.+
T Consensus       255 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~  326 (397)
T 1sq9_A          255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKERI  326 (397)
T ss_dssp             TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEE
T ss_pred             CCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCcee
Confidence               9999999999999999998             999999999999999999999 9999999999988765

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.6e-31  Score=214.27  Aligned_cols=227  Identities=20%  Similarity=0.345  Sum_probs=181.5

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..|+............+ ...+|...|.+++|+|++++|++++.||.|++||+.++..               .....
T Consensus        73 ~i~iw~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---------------~~~~~  136 (337)
T 1gxr_A           73 CVKVWDISHPGNKSPVSQL-DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP---------------RIKAE  136 (337)
T ss_dssp             EEEEEETTSTTCCSCSEEE-ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------------EEEEE
T ss_pred             eEEEEECCCCCceeeeecc-cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc---------------ceeee
Confidence            3556666654433221111 2237999999999999999999999999999999985431               11123


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  193 (304)
                      ...+...+.+++|       +|+++++++++.||.|++||+++++....+..+..     .+.+++|+|++++++++ .|
T Consensus       137 ~~~~~~~i~~~~~-------~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          137 LTSSAPACYALAI-------SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-----GASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             EECSSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETT
T ss_pred             cccCCCceEEEEE-------CCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC-----ceEEEEECCCCCEEEEEecC
Confidence            3446677888888       77899999999999999999999988887776554     89999999999999965 99


Q ss_pred             CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEE
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF  273 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  273 (304)
                      +.|++||++...    ....     ..+...+.+++|+| ++.++++++.++.|++||+++++.. .+..|...|.+++|
T Consensus       205 g~i~~~d~~~~~----~~~~-----~~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~  273 (337)
T 1gxr_A          205 NTVRSWDLREGR----QLQQ-----HDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKF  273 (337)
T ss_dssp             SEEEEEETTTTE----EEEE-----EECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEE
T ss_pred             CcEEEEECCCCc----eEee-----ecCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEE
Confidence            999999998641    1111     12456799999999 7789999999999999999887754 56789999999999


Q ss_pred             CCCCcEEEEeeccCCeEEEEecccceee
Q 022019          274 SRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       274 ~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +|++++|++++ .||.|++||+.+++.+
T Consensus       274 ~~~~~~l~~~~-~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          274 AYCGKWFVSTG-KDNLLNAWRTPYGASI  300 (337)
T ss_dssp             CTTSSEEEEEE-TTSEEEEEETTTCCEE
T ss_pred             CCCCCEEEEec-CCCcEEEEECCCCeEE
Confidence            99999999999 9999999999988765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-32  Score=223.22  Aligned_cols=214  Identities=18%  Similarity=0.252  Sum_probs=170.2

Q ss_pred             eeeecCCCCceeEEEEcCC--CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           53 FRTSSIPNNFLKGIKWSPD--GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      ...+.+|.+.|++++|+|+  +.+|++|+.||.|++||+.++..               ........+...+.+++|   
T Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---------------~~~~~~~~~~~~v~~~~~---  109 (379)
T 3jrp_A           48 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW---------------SQIAVHAVHSASVNSVQW---  109 (379)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE---------------EEEEEECCCSSCEEEEEE---
T ss_pred             eeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce---------------eEeeeecCCCcceEEEEe---
Confidence            4477899999999999987  99999999999999999875421               011233346688999988   


Q ss_pred             cceeCCC--ccEEEEEeCCCCEEEEEcCCCeeeE--EeecccccccccceEEEEECC-------------CCcEEEEE-c
Q 022019          131 MSASDPT--SCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNP-------------TGTKIFAG-Y  192 (304)
Q Consensus       131 ~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~v~~i~~~~-------------~~~~l~~~-~  192 (304)
                          +|+  +.+|++++.||.|++||++++....  .+..+.     ..|.+++|+|             ++.+++++ .
T Consensus       110 ----~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  180 (379)
T 3jrp_A          110 ----APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA-----IGVNSASWAPATIEEDGEHNGTKESRKFVTGGA  180 (379)
T ss_dssp             ----CCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT-----TCEEEEEECCCC----------CTTCEEEEEET
T ss_pred             ----CCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC-----CceEEEEEcCccccccccccCCCCCCEEEEEeC
Confidence                556  8899999999999999998874332  333333     3899999999             68888865 9


Q ss_pred             CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCC--CcEEEEEecCCeEEEEecCCce-----EeEEecccc
Q 022019          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH--TGMLAIGSYSQTSAIYREDNME-----LLYVLHGQE  265 (304)
Q Consensus       193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~  265 (304)
                      |+.|++||++........    .....+|...|.+++|+|++  +.+|++++.||.|++||++.+.     .+.....|.
T Consensus       181 dg~i~i~d~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  256 (379)
T 3jrp_A          181 DNLVKIWKYNSDAQTYVL----ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP  256 (379)
T ss_dssp             TSCEEEEEEETTTTEEEE----EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCS
T ss_pred             CCeEEEEEecCCCcceee----EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCC
Confidence            999999999875433222    22336788899999999943  8899999999999999998863     223333588


Q ss_pred             CCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       266 ~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      ..|++++|+|+|++|++++ .||.|++|+++.+
T Consensus       257 ~~v~~~~~s~~g~~l~~~~-~dg~i~iw~~~~~  288 (379)
T 3jrp_A          257 DVLWRASWSLSGNVLALSG-GDNKVTLWKENLE  288 (379)
T ss_dssp             SCEEEEEECSSSCCEEEEE-SSSSEEEEEEEET
T ss_pred             CcEEEEEEcCCCCEEEEec-CCCcEEEEeCCCC
Confidence            8999999999999999999 8999999999854

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.8e-32  Score=225.33  Aligned_cols=225  Identities=16%  Similarity=0.181  Sum_probs=175.1

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..|++.....      ...+.+|.+.|++++|+|++++|++|+.||.|++||+.+++...                 .
T Consensus       120 ~i~iwd~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-----------------~  176 (420)
T 3vl1_A          120 DIKVLDSNFNLQ------REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR-----------------T  176 (420)
T ss_dssp             CEEEECTTSCEE------EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE-----------------E
T ss_pred             CEEEEeCCCcce------eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce-----------------E
Confidence            345566554332      23567999999999999999999999999999999998654321                 2


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccc-------------------cccc
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD-------------------EITA  175 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------------------~~~~  175 (304)
                      ...|...|.+++|       +|++++|++++.||.|++||+++++....+..+....                   +...
T Consensus       177 ~~~h~~~v~~~~~-------~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  249 (420)
T 3vl1_A          177 LIGHRATVTDIAI-------IDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK  249 (420)
T ss_dssp             EECCSSCEEEEEE-------ETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred             EcCCCCcEEEEEE-------cCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence            3457788999988       6689999999999999999999999888876543110                   1124


Q ss_pred             eEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC
Q 022019          176 AFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (304)
Q Consensus       176 v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  254 (304)
                      +.+++|+|++++++++ .||.|++||++....       .......|...+.+++|+|++..+|++|+.||.|++||+++
T Consensus       250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  322 (420)
T 3vl1_A          250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ-------TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS  322 (420)
T ss_dssp             CCTTCSSCTTEEEEEEETTSCEEEEETTTCCE-------EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             ccceEEcCCCCEEEEEcCCCeEEEEECCCCce-------eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence            5556668999999966 999999999987421       11112457788999999995444999999999999999998


Q ss_pred             ce-EeEEecc-ccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          255 ME-LLYVLHG-QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       255 ~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      ++ ++..+.+ |...|.++.| +++.+|++++ .|+.|++|++.++
T Consensus       323 ~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~-~d~~v~iw~~~~~  366 (420)
T 3vl1_A          323 PECPVGEFLINEGTPINNVYF-AAGALFVSSG-FDTSIKLDIISDP  366 (420)
T ss_dssp             TTSCSEEEEESTTSCEEEEEE-ETTEEEEEET-TTEEEEEEEECCT
T ss_pred             CcCchhhhhccCCCCceEEEe-CCCCEEEEec-CCccEEEEeccCC
Confidence            74 4777776 5667888855 5788999999 9999999998773

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.3e-32  Score=225.57  Aligned_cols=215  Identities=13%  Similarity=0.144  Sum_probs=169.9

Q ss_pred             eeecCC-----CCceeEEEEc----CCCCe-EEEecCCCeEEEeeCCC------CCCccccccccccccCCccceEEE--
Q 022019           54 RTSSIP-----NNFLKGIKWS----PDGSS-FLTSSEDKTLRIFSLPE------NGISYDVNACSLAKDQDSYEASLV--  115 (304)
Q Consensus        54 ~~~~~h-----~~~V~~i~~s----~~~~~-l~s~~~dg~v~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~--  115 (304)
                      ..+..|     ...|.+++|+    |++.+ |++++.||.|++||+.+      .......           ....+.  
T Consensus       110 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~  178 (397)
T 1sq9_A          110 EKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS-----------PTLELQGT  178 (397)
T ss_dssp             EEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC-----------CEEEEEEE
T ss_pred             eeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeecc-----------Ccceeeee
Confidence            466677     5999999999    99999 99999999999999986      3221100           000011  


Q ss_pred             ----eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeec---ccccccccceEEEEECCCCcEE
Q 022019          116 ----VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA---YDAVDEITAAFSVAFNPTGTKI  188 (304)
Q Consensus       116 ----~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~l  188 (304)
                          ..+...+.+++|       +|++ ++++++.||.|++||+++++....+..   +.  .....|.+++|+|++++|
T Consensus       179 ~~~~~~~~~~i~~~~~-------~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~--~~~~~i~~i~~~~~~~~l  248 (397)
T 1sq9_A          179 VESPMTPSQFATSVDI-------SERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMI--NNSNSIRSVKFSPQGSLL  248 (397)
T ss_dssp             ECCSSSSCCCCCEEEE-------CTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC-----CCCCCEEEEEECSSTTEE
T ss_pred             eccccCCCCCceEEEE-------CCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccc--ccCCccceEEECCCCCEE
Confidence                224567778877       7788 999999999999999999988888876   40  002389999999999999


Q ss_pred             EEE-cC---CeEEEEEcCCCCccceeeeeeeccccc-------------cccceeEEEeecCCCcEEEEEecCCeEEEEe
Q 022019          189 FAG-YN---KSVRVFDVHRPGRDFEKYSTLKGNKEG-------------QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR  251 (304)
Q Consensus       189 ~~~-~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d  251 (304)
                      +++ .|   +.|++||++...    ....+    .+             |...|.+++|+| ++.+|++++.||.|++||
T Consensus       249 ~~~~~d~~~g~i~i~d~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd  319 (397)
T 1sq9_A          249 AIAHDSNSFGCITLYETEFGE----RIGSL----SVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWD  319 (397)
T ss_dssp             EEEEEETTEEEEEEEETTTCC----EEEEE----CBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEE
T ss_pred             EEEecCCCCceEEEEECCCCc----cccee----ccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEE
Confidence            965 88   999999998642    11222    33             788899999999 778999999999999999


Q ss_pred             cCCceEeEEec------cc---------------cCCeEEEEECCCC----------cEEEEeeccCCeEEEEecccce
Q 022019          252 EDNMELLYVLH------GQ---------------EGGVTHVQFSRDG----------NYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       252 ~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~----------~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      +++++++..+.      +|               ...|++++|+|+|          .+|++++ .||.|++|++++|+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC-LDRSIRWFREAGGK  397 (397)
T ss_dssp             TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE-TTTEEEEEEEEC--
T ss_pred             cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec-CCCcEEEEEcCCCC
Confidence            99999999998      88               8999999999998          7999999 99999999999874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.8e-31  Score=220.70  Aligned_cols=216  Identities=21%  Similarity=0.325  Sum_probs=173.0

Q ss_pred             cCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC
Q 022019           57 SIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        57 ~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (304)
                      .+|...|.+++|+| ++.+|++++.||.|++||+.++...                  ....+...+..+.|.|.    +
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------------~~~~~~~~~~~~~~~~~----~  153 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA------------------DVFNFEETVYSHHMSPV----S  153 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE------------------EEEECSSCEEEEEECSS----C
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc------------------eeccCCCceeeeEeecC----C
Confidence            36999999999999 7889999999999999999865321                  23345577888888664    5


Q ss_pred             CCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCc-EEEEE-cCCeEEEEEcCCCCccceeee-
Q 022019          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFAG-YNKSVRVFDVHRPGRDFEKYS-  212 (304)
Q Consensus       136 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~v~d~~~~~~~~~~~~-  212 (304)
                      +++.++++++.||.|++||+++++....+..+..     .|.+++|+|++. +++++ .||.|++||++........+. 
T Consensus       154 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~  228 (408)
T 4a11_B          154 TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ-----EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ  228 (408)
T ss_dssp             SSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCT
T ss_pred             CCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC-----cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccc
Confidence            5777999999999999999999988887776554     899999999998 46655 999999999987543332221 


Q ss_pred             -------eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc------------------------------
Q 022019          213 -------TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM------------------------------  255 (304)
Q Consensus       213 -------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~------------------------------  255 (304)
                             ........|...|.+++|+| ++.+|++++.||.|++||++++                              
T Consensus       229 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
T 4a11_B          229 HNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF  307 (408)
T ss_dssp             TTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred             cccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence                   11222256788899999999 7889999999999999998653                              


Q ss_pred             -----------------eEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          256 -----------------ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       256 -----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                                       +++..+.+|...|++++|+|++++|++++ .||.|++||+++++.+
T Consensus       308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS-RDCNILAWVPSLYEPV  369 (408)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCEEEEEECC----
T ss_pred             EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC-CCCeEEEEeCCCCCcc
Confidence                             44566778999999999999999999999 9999999999988764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-32  Score=229.62  Aligned_cols=222  Identities=17%  Similarity=0.229  Sum_probs=170.6

Q ss_pred             eeee-cCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           53 FRTS-SIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        53 ~~~~-~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      +..+ .+|.+.|++++|+| ++++|++|+.||+|+|||+.+....            ..........|...|.+++|   
T Consensus        55 ~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~------------~~~~~~~~~~h~~~v~~~~~---  119 (437)
T 3gre_A           55 IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG------------EVYSSSLTYDCSSTVTQITM---  119 (437)
T ss_dssp             EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT------------CCCSCSEEEECSSCEEEEEE---
T ss_pred             EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC------------cccceeeeccCCCCEEEEEE---
Confidence            3356 89999999999999 9999999999999999998641110            00111234467889999988   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcC---CCeeeEEeecccc-----cc--cccceEEEE--ECCCCcEEEEE-cCCeEE
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDAT---TGLLRCTYRAYDA-----VD--EITAAFSVA--FNPTGTKIFAG-YNKSVR  197 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~-----~~--~~~~v~~i~--~~~~~~~l~~~-~d~~i~  197 (304)
                          +|++.+|++++.||.|++||+.   +++.......+..     ..  +...+.++.  +++++.+++++ .|+.|+
T Consensus       120 ----~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  195 (437)
T 3gre_A          120 ----IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVI  195 (437)
T ss_dssp             ----CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEE
T ss_pred             ----eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEE
Confidence                6789999999999999999995   4544433322110     00  223566666  66889999965 999999


Q ss_pred             EEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-cccCCeEEEEEC--
Q 022019          198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFS--  274 (304)
Q Consensus       198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~--  274 (304)
                      +||++...    ....+..  ..|...|++++|+| ++.+|++|+.||.|++||+++++++..+. .|...|++++|+  
T Consensus       196 iwd~~~~~----~~~~~~~--~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  268 (437)
T 3gre_A          196 IFDIRTLE----RLQIIEN--SPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF  268 (437)
T ss_dssp             EEETTTCC----EEEEEEC--CGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred             EEeCCCCe----eeEEEcc--CCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence            99998742    1122211  12778899999999 78899999999999999999999999886 788899999655  


Q ss_pred             --CCCcEEEEeeccCCeEEEEecccceee
Q 022019          275 --RDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       275 --~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                        |++.+|++++ .||.|++||+++++.+
T Consensus       269 ~s~~~~~l~s~~-~dg~i~iwd~~~~~~~  296 (437)
T 3gre_A          269 YGKNSVIVVGGS-SKTFLTIWNFVKGHCQ  296 (437)
T ss_dssp             TCTTEEEEEEES-TTEEEEEEETTTTEEE
T ss_pred             cCCCccEEEEEc-CCCcEEEEEcCCCcEE
Confidence              5688999999 9999999999988754

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.1e-32  Score=229.29  Aligned_cols=228  Identities=17%  Similarity=0.246  Sum_probs=167.2

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecC------------CeEEEE
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG------------ESVYDF  125 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~  125 (304)
                      .|.+.|++++|+|+|++||+|+.||.|+|||+.++........      ...........|.            ..|.++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~------~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l   99 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSR------GEYNVYSTFQSHEPEFDYLKSLEIEEKINKI   99 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCC------CCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccc------cceeEecccccccccccccccccccCceEEE
Confidence            4688999999999999999999999999999986542110000      0011122333454            668888


Q ss_pred             eecCccceeCCCc--cEEEEEeCCCCEEEEEcCCCeeeEEe-e----------------------------------ccc
Q 022019          126 CWFPHMSASDPTS--CVFASTTRDHPIHLWDATTGLLRCTY-R----------------------------------AYD  168 (304)
Q Consensus       126 ~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~-~----------------------------------~~~  168 (304)
                      +|       +|++  ..|++++.|+.|++||+.++...... .                                  ...
T Consensus       100 ~~-------~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (447)
T 3dw8_B          100 RW-------LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF  172 (447)
T ss_dssp             EE-------CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred             EE-------cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence            88       5566  78999999999999999764432110 0                                  000


Q ss_pred             ccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEE
Q 022019          169 AVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSA  248 (304)
Q Consensus       169 ~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~  248 (304)
                      ...|...|.+++|+|++++|++|.|+.|++||++........+........+|...|.+++|+|++..+|++|+.||.|+
T Consensus       173 ~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  252 (447)
T 3dw8_B          173 ANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR  252 (447)
T ss_dssp             CSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             ccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence            11345589999999999999977999999999984322222111111234678889999999995448999999999999


Q ss_pred             EEecCCceE----eEEeccccC------------CeEEEEECCCCcEEEEeeccCCeEEEEeccc-cee
Q 022019          249 IYREDNMEL----LYVLHGQEG------------GVTHVQFSRDGNYLYTGGRKDPYILCWDLRK-AVQ  300 (304)
Q Consensus       249 i~d~~~~~~----~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~-~~~  300 (304)
                      +||+++++.    +..+.+|..            .|.+++|+|+|++|++++ . +.|++||+++ ++.
T Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd~~~~~~~  319 (447)
T 3dw8_B          253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWDLNMENRP  319 (447)
T ss_dssp             EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEETTCCSSC
T ss_pred             EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEeCCCCccc
Confidence            999998886    788888876            899999999999999998 7 9999999987 543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-31  Score=221.41  Aligned_cols=220  Identities=16%  Similarity=0.268  Sum_probs=176.5

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..|+.........     ....|.+.|++++|+|++++|++|+.||.|++||+.++....                 .
T Consensus       114 ~v~lw~~~~~~~~~~-----~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------------~  171 (401)
T 4aez_A          114 NVYVWNADSGSVSAL-----AETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR-----------------T  171 (401)
T ss_dssp             EEEEEETTTCCEEEE-----EECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-----------------E
T ss_pred             eEEEeeCCCCcEeEe-----eecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE-----------------E
Confidence            455666665544331     223489999999999999999999999999999998653321                 2


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcC-CCeeeEEeecccccccccceEEEEECCCCcEEEEE-c
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~  192 (304)
                      ...|...|.+++|         ++.++++++.||.|++||++ .+.....+..+..     .|.+++|+|++++|+++ .
T Consensus       172 ~~~~~~~v~~~~~---------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~  237 (401)
T 4aez_A          172 MAGHQARVGCLSW---------NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS-----EVCGLAWRSDGLQLASGGN  237 (401)
T ss_dssp             ECCCSSCEEEEEE---------ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEEEET
T ss_pred             ecCCCCceEEEEE---------CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCC-----CeeEEEEcCCCCEEEEEeC
Confidence            3356688999988         45699999999999999998 4555666665554     89999999999999965 8


Q ss_pred             CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEe--cCCeEEEEecCCceEeEEeccccCCeEE
Q 022019          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS--YSQTSAIYREDNMELLYVLHGQEGGVTH  270 (304)
Q Consensus       193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~  270 (304)
                      |+.|++||++...        .......|...|.+++|+|++..++++|+  .|+.|++||+++++++..+. +...|.+
T Consensus       238 d~~v~iwd~~~~~--------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~  308 (401)
T 4aez_A          238 DNVVQIWDARSSI--------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTS  308 (401)
T ss_dssp             TSCEEEEETTCSS--------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEE
T ss_pred             CCeEEEccCCCCC--------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEE
Confidence            9999999998631        11122567888999999997778888876  79999999999999998886 6678999


Q ss_pred             EEECCCCcEEEE--eeccCCeEEEEeccccee
Q 022019          271 VQFSRDGNYLYT--GGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       271 ~~~~~~~~~l~~--~~~~d~~i~vwd~~~~~~  300 (304)
                      ++|+|++++|++  |+ .||.|++||+.+++.
T Consensus       309 ~~~s~~~~~l~~~~g~-~dg~i~v~~~~~~~~  339 (401)
T 4aez_A          309 LIWSPHSKEIMSTHGF-PDNNLSIWSYSSSGL  339 (401)
T ss_dssp             EEECSSSSEEEEEECT-TTCEEEEEEEETTEE
T ss_pred             EEECCCCCeEEEEeec-CCCcEEEEecCCccc
Confidence            999999999998  55 799999999998644

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.6e-31  Score=213.43  Aligned_cols=210  Identities=13%  Similarity=0.208  Sum_probs=171.2

Q ss_pred             ecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC
Q 022019           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (304)
                      ..+|.+.|++++|+|++++|++++ ||.|++||+.++........            .....+...+.+++|       +
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~-------~  106 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ------------LDCLNRDNYIRSCKL-------L  106 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE------------EECSCTTSBEEEEEE-------C
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeec------------ccccCCCCcEEEEEE-------c
Confidence            347999999999999999999999 99999999986543211110            011146678999988       7


Q ss_pred             CCccEEEEEeCCCCEEEEEcCCCe--eeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeee
Q 022019          136 PTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       136 ~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~  212 (304)
                      |++++|++++.||.|++||+.+++  ....+..+.     ..+.+++|+|++++++++ .|+.|++||++..    ..  
T Consensus       107 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~----~~--  175 (337)
T 1gxr_A          107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA-----PACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----TL--  175 (337)
T ss_dssp             TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS-----SCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EE--
T ss_pred             CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCC-----CceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----ce--
Confidence            789999999999999999999877  334444433     389999999999999965 9999999999863    11  


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                        ......|...+.+++|+| ++.+|++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++ .|+.|++
T Consensus       176 --~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~  250 (337)
T 1gxr_A          176 --VRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEV  250 (337)
T ss_dssp             --EEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEE
T ss_pred             --eeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEE
Confidence              112256788899999999 77899999999999999999999888875 778899999999999999999 9999999


Q ss_pred             Eecccceee
Q 022019          293 WDLRKAVQV  301 (304)
Q Consensus       293 wd~~~~~~~  301 (304)
                      ||+++++..
T Consensus       251 ~~~~~~~~~  259 (337)
T 1gxr_A          251 LHVNKPDKY  259 (337)
T ss_dssp             EETTSSCEE
T ss_pred             EECCCCCeE
Confidence            999887543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.8e-32  Score=225.93  Aligned_cols=223  Identities=12%  Similarity=0.172  Sum_probs=173.8

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..|+........      .+..| ..+....|+|++++|++|+.||.|++||+.++....                 .
T Consensus        79 ~v~i~d~~~~~~~~------~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------------~  134 (420)
T 3vl1_A           79 HDFLFNTIIRDGSK------MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE-----------------I  134 (420)
T ss_dssp             EEEEEECCSEETTT------TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE-----------------E
T ss_pred             cEEEEEecccceee------EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee-----------------e
Confidence            34556655444332      23344 445566789999999999999999999987543211                 1


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  193 (304)
                      ...|...|.+++|       +|++++|++++.|+.|++||+.+++....+..+..     .|.+++|+|++++|+++ .|
T Consensus       135 ~~~h~~~v~~~~~-------~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d  202 (420)
T 3vl1_A          135 DQAHVSEITKLKF-------FPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA-----TVTDIAIIDRGRNVLSASLD  202 (420)
T ss_dssp             TTSSSSCEEEEEE-------CTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSS-----CEEEEEEETTTTEEEEEETT
T ss_pred             cccccCccEEEEE-------CCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCC-----cEEEEEEcCCCCEEEEEcCC
Confidence            2256688999988       77899999999999999999999988888876654     89999999999999965 99


Q ss_pred             CeEEEEEcCCCCccceeeeeeeccccc---------------------cccceeEEEeecCCCcEEEEEecCCeEEEEec
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKEG---------------------QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~---------------------~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~  252 (304)
                      +.|++||+++..    ....+... ..                     +...+.+++|+| ++.+|++|+.||.|++||+
T Consensus       203 ~~v~iwd~~~~~----~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~  276 (420)
T 3vl1_A          203 GTIRLWECGTGT----TIHTFNRK-ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNV  276 (420)
T ss_dssp             SCEEEEETTTTE----EEEEECBT-TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEET
T ss_pred             CcEEEeECCCCc----eeEEeecC-CCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEEC
Confidence            999999998642    11222110 11                     234456667788 7889999999999999999


Q ss_pred             CCceEeEEec-cccCCeEEEEECCCCc-EEEEeeccCCeEEEEeccccee
Q 022019          253 DNMELLYVLH-GQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       253 ~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      ++++.+..+. .|...|++++|+|++. +|++++ .||.|++||+++++.
T Consensus       277 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          277 FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY-ENGMLAQWDLRSPEC  325 (420)
T ss_dssp             TTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTS
T ss_pred             CCCceeEEcccccCCCceeEEEeCCCCCEEEEEe-CCCeEEEEEcCCCcC
Confidence            9988777765 5788999999999999 999999 999999999998754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.3e-33  Score=225.23  Aligned_cols=232  Identities=17%  Similarity=0.222  Sum_probs=174.9

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (304)
                      .+..|++.....      ...+.+|.+.|.+++|+| ++.+|++|+.||.|++||+.+++.......             
T Consensus        96 ~i~v~d~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------  156 (366)
T 3k26_A           96 IIRIINPITMQC------IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG-------------  156 (366)
T ss_dssp             EEEEECTTTCCE------EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS-------------
T ss_pred             EEEEEEchhceE------eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc-------------
Confidence            455666665433      336778999999999999 999999999999999999986533211100             


Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecc-----------------------ccc
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-----------------------DAV  170 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------------~~~  170 (304)
                       ...+...|.+++|       +|++++|++++.||.|++||+++++....+...                       ...
T Consensus       157 -~~~~~~~v~~~~~-------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T 3k26_A          157 -VEGHRDEVLSADY-------DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD  228 (366)
T ss_dssp             -TTSCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred             -cccccCceeEEEE-------CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence             0246678999988       778999999999999999999876544332210                       000


Q ss_pred             ccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceee------eeeeccccccccceeEEEeecCC--CcEEEEE
Q 022019          171 DEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY------STLKGNKEGQAGIMSAIAFSPTH--TGMLAIG  241 (304)
Q Consensus       171 ~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~  241 (304)
                      .+...|.+++|+  +++++++ .|+.|++||++.........      .........|...|.+++|+| +  +.+|++|
T Consensus       229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~  305 (366)
T 3k26_A          229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALG  305 (366)
T ss_dssp             SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEE
T ss_pred             CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEE
Confidence            144589999998  6678865 99999999998754311110      112223356777899999999 6  8899999


Q ss_pred             ecCCeEEEEecCCce----EeEEeccc--cCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          242 SYSQTSAIYREDNME----LLYVLHGQ--EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       242 ~~dg~i~i~d~~~~~----~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      +.||.|++||+.+++    ....+.+|  ...|++++|+|++++|++++ .||.|++||+.+
T Consensus       306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~  366 (366)
T 3k26_A          306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC-DDASIWRWDRLR  366 (366)
T ss_dssp             CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSEEEEEEC--
T ss_pred             ecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe-CCCEEEEEEecC
Confidence            999999999999875    44477777  78999999999999999999 999999999863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.2e-31  Score=230.08  Aligned_cols=203  Identities=25%  Similarity=0.441  Sum_probs=170.6

Q ss_pred             eeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      ..+.+|...|.+++|+|+|++|++++.||.|++||.... .                 ......|...|.+++|      
T Consensus       338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~-~-----------------~~~~~~~~~~v~~~~~------  393 (577)
T 2ymu_A          338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-L-----------------LQTLTGHSSSVRGVAF------  393 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC-E-----------------EEEEECCSSCEEEEEE------
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC-E-----------------EEEecCCCCCeEEEEE------
Confidence            467789999999999999999999999999999996421 1                 1133456678888877      


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeee
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~  212 (304)
                       +|++++|++++.|+.|++||. +++....+..+..     .|.+++|+|++++|+++ .|+.|++||...     ....
T Consensus       394 -s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~-----~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-----~~~~  461 (577)
T 2ymu_A          394 -SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-----SVWGVAFSPDDQTIASASDDKTVKLWNRNG-----QLLQ  461 (577)
T ss_dssp             -CTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTS-----CEEE
T ss_pred             -CCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCC-----CeEEEEECCCCCEEEEEcCCCEEEEEECCC-----CEEE
Confidence             789999999999999999995 5666666665554     89999999999999965 999999999743     1112


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                      .    ..+|...|.+++|+| ++.+|++++.|+.|++||. +++++..+.+|...|++++|+|+|++|++++ .||.|++
T Consensus       462 ~----~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~dg~v~l  534 (577)
T 2ymu_A          462 T----LTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKL  534 (577)
T ss_dssp             E----EECCSSCEEEEEECT-TSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSEEEE
T ss_pred             E----EcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE-CcCEEEE
Confidence            2    256788899999999 7889999999999999995 6788899999999999999999999999999 9999999


Q ss_pred             Eeccccee
Q 022019          293 WDLRKAVQ  300 (304)
Q Consensus       293 wd~~~~~~  300 (304)
                      ||. +++.
T Consensus       535 wd~-~~~~  541 (577)
T 2ymu_A          535 WNR-NGQL  541 (577)
T ss_dssp             ECT-TSCE
T ss_pred             EeC-CCCE
Confidence            996 4443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.8e-31  Score=218.78  Aligned_cols=221  Identities=18%  Similarity=0.279  Sum_probs=173.0

Q ss_pred             eecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      .+.+|.+.|++++|+| ++++|++|+.||.|++||+.++................    .....|...|.+++|      
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~------  107 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGR----DHPDVHRYSVETVQW------  107 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECT----TCTTCCSSCEEEEEE------
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccc----cccccCCCcEEEEEE------
Confidence            6678999999999999 99999999999999999998765533322110000000    000136688999988      


Q ss_pred             eCC-CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCC---cEEEEE-cCCeEEEEEcCCCCccc
Q 022019          134 SDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG---TKIFAG-YNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       134 ~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~l~~~-~d~~i~v~d~~~~~~~~  208 (304)
                       +| ++.+|++++.||.|++||+.+++....+....      .+.++.|+|.+   .+++++ .++.|++||++.... .
T Consensus       108 -~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~  179 (408)
T 4a11_B          108 -YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEE------TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-S  179 (408)
T ss_dssp             -CTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSS------CEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-C
T ss_pred             -ccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCC------ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-e
Confidence             55 67799999999999999999998887776433      78899999854   478855 999999999986421 1


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce-EeEEe---------------ccccCCeEEEE
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVL---------------HGQEGGVTHVQ  272 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~v~~~~  272 (304)
                             ....+|...|.+++|+|++..++++|+.||.|++||++.+. ++..+               ..|...|.+++
T Consensus       180 -------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  252 (408)
T 4a11_B          180 -------HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC  252 (408)
T ss_dssp             -------EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred             -------eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence                   12256788899999999655579999999999999998765 44444               56888999999


Q ss_pred             ECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          273 FSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       273 ~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      |+|++.+|++++ .||.|++||+++++.+
T Consensus       253 ~~~~~~~l~~~~-~dg~i~vwd~~~~~~~  280 (408)
T 4a11_B          253 FTSDGLHLLTVG-TDNRMRLWNSSNGENT  280 (408)
T ss_dssp             ECTTSSEEEEEE-TTSCEEEEETTTCCBC
T ss_pred             EcCCCCEEEEec-CCCeEEEEECCCCccc
Confidence            999999999999 9999999999987654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=222.68  Aligned_cols=221  Identities=10%  Similarity=0.161  Sum_probs=174.8

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccccccc----------------------cc----
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLA----------------------KD----  106 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~----------------------~~----  106 (304)
                      ...+.+|...|.+++|+|++++|++++.||.|++||+.++............                      ..    
T Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (425)
T 1r5m_A          142 LNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFV  221 (425)
T ss_dssp             EEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEE
T ss_pred             eeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEE
Confidence            3467789999999999999999999999999999999876543322211100                      00    


Q ss_pred             -------------CCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccc
Q 022019          107 -------------QDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI  173 (304)
Q Consensus       107 -------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  173 (304)
                                   ...........+...+.+++|       +|++++|++++.||.|++||+++++....+..+..    
T Consensus       222 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----  290 (425)
T 1r5m_A          222 IPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEF-------NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ----  290 (425)
T ss_dssp             EECGGGCEEEEETTCSSCSEEECCCSSCEEEEEE-------ETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSS----
T ss_pred             EEcCCCeEEEEEcCCCceeeeeccCCCceEEEEE-------CCCCCEEEEEcCCCEEEEEECCCCccceEecCCCc----
Confidence                         000111122245566777766       77889999999999999999999888777765544    


Q ss_pred             cceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEec
Q 022019          174 TAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (304)
Q Consensus       174 ~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~  252 (304)
                       .|.++.|+|++ .+++ +.|+.|++||++...    ...    ....|...+.+++|+| ++.+|++++.||.|++||+
T Consensus       291 -~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~----~~~----~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~  359 (425)
T 1r5m_A          291 -SIVSASWVGDD-KVISCSMDGSVRLWSLKQNT----LLA----LSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDL  359 (425)
T ss_dssp             -CEEEEEEETTT-EEEEEETTSEEEEEETTTTE----EEE----EEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEEC
T ss_pred             -cEEEEEECCCC-EEEEEeCCCcEEEEECCCCc----EeE----ecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEEC
Confidence             89999999999 6664 599999999997631    112    2245677899999999 7789999999999999999


Q ss_pred             CCce--------------------EeEEeccccC--CeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          253 DNME--------------------LLYVLHGQEG--GVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       253 ~~~~--------------------~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      ++++                    ++..+.+|..  .|++++|+|++++|++++ .||.|++|+++
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~  424 (425)
T 1r5m_A          360 KKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY-SLQEGSVVAIP  424 (425)
T ss_dssp             HHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE-SSSCCEEEECC
T ss_pred             CCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEe-cCceEEEEeec
Confidence            9888                    8899999976  999999999999999999 99999999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.8e-32  Score=220.08  Aligned_cols=233  Identities=14%  Similarity=0.220  Sum_probs=177.3

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..|+.....    ......+.+|...|++++|+|++++|++++.||.|++||+.++....               ...
T Consensus        31 ~v~i~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---------------~~~   91 (372)
T 1k8k_C           31 EVHIYEKSGNK----WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP---------------TLV   91 (372)
T ss_dssp             EEEEEEEETTE----EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE---------------EEE
T ss_pred             EEEEEeCCCCc----EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeee---------------eEE
Confidence            34455544432    12344777999999999999999999999999999999987543211               111


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  193 (304)
                      ...+...+.+++|       +|++++|++++.||.|++||++.+.......... ..+...|.+++|+|++++++++ .|
T Consensus        92 ~~~~~~~v~~~~~-------~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C           92 ILRINRAARCVRW-------APNEKKFAVGSGSRVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             CCCCSSCEEEEEE-------CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             eecCCCceeEEEE-------CCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee-cccCCCeeEEEEcCCCCEEEEEcCC
Confidence            2345678888888       7789999999999999999998876322111110 1233489999999999999965 89


Q ss_pred             CeEEEEEcCCCCccc----------eeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc
Q 022019          194 KSVRVFDVHRPGRDF----------EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  263 (304)
                      +.|++||++......          ...........+|...+.+++|+| ++.+|++++.||.|++||+++++++..+..
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  242 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLAS  242 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence            999999975321000          000112222356788899999999 777999999999999999999999999999


Q ss_pred             ccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          264 QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       264 ~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      |...|.+++|+|++.+|+++  .|+.|++|++++
T Consensus       243 ~~~~v~~~~~~~~~~~l~~~--~d~~i~i~~~~~  274 (372)
T 1k8k_C          243 ETLPLLAVTFITESSLVAAG--HDCFPVLFTYDS  274 (372)
T ss_dssp             SSCCEEEEEEEETTEEEEEE--TTSSCEEEEEET
T ss_pred             CCCCeEEEEEecCCCEEEEE--eCCeEEEEEccC
Confidence            99999999999999977766  599999999988

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-31  Score=218.93  Aligned_cols=205  Identities=15%  Similarity=0.225  Sum_probs=168.5

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      |.+.|++++|+|++++|++++.||.|++||.. +..                 ......|...|.+++|       +|++
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~~-----------------~~~~~~~~~~v~~~~~-------~~~~  161 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GAL-----------------LNVLNFHRAPIVSVKW-------NKDG  161 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-SCE-----------------EEEECCCCSCEEEEEE-------CTTS
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCe-----------------eeeccCCCccEEEEEE-------CCCC
Confidence            78899999999999999999999999999933 211                 1133346678888888       6788


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeeccccc------------------------------------------------
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAV------------------------------------------------  170 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------------------------------------------  170 (304)
                      ++|++++.||.|++||+.+++....+..+...                                                
T Consensus       162 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~  241 (425)
T 1r5m_A          162 THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTG  241 (425)
T ss_dssp             SEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSE
T ss_pred             CEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceee
Confidence            89999999999999999888766554432211                                                


Q ss_pred             ---ccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCe
Q 022019          171 ---DEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT  246 (304)
Q Consensus       171 ---~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  246 (304)
                         .+...|.+++|+|++++|+++ .|+.|++||++...        ......+|...+.+++|+| ++ ++++++.||.
T Consensus       242 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~  311 (425)
T 1r5m_A          242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN--------SQNCFYGHSQSIVSASWVG-DD-KVISCSMDGS  311 (425)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS--------CSEEECCCSSCEEEEEEET-TT-EEEEEETTSE
T ss_pred             eeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc--------cceEecCCCccEEEEEECC-CC-EEEEEeCCCc
Confidence               234578999999999999965 89999999998632        1112245778899999999 55 9999999999


Q ss_pred             EEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          247 SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       247 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      |++||+++++++..+..|...|.+++|+|++++|++++ .||.|++||+++++
T Consensus       312 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          312 VRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF-MDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE-TTSCEEEEECHHHH
T ss_pred             EEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE-CCCeEEEEECCCCc
Confidence            99999999999999999999999999999999999999 99999999998876

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-32  Score=238.84  Aligned_cols=213  Identities=17%  Similarity=0.269  Sum_probs=171.2

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+.+|.+.|++++|+|+|++|++|+.||+|+|||+.++.               .........|...|.+++|.|     
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~---------------~~~~~~l~~h~~~V~~l~~s~-----   63 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------HKLIDTLTGHEGPVWRVDWAH-----   63 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE---------------EEEEEEECCCSSCEEEEEECC-----
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC---------------CccceeccCCcCceEEEEecC-----
Confidence            678999999999999999999999999999999986321               111223445778999999843     


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCe--eeEEeecccccccccceEEEEECCC--CcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                      +.++++|++|+.||.|++||+.+++  ....+..+.     ..|.+++|+|+  +..+++| .||.|++||++.......
T Consensus        64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~-----~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~  138 (753)
T 3jro_A           64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS-----ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP  138 (753)
T ss_dssp             TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-----SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC-----CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce
Confidence            1238999999999999999999886  444444444     38999999999  8899865 999999999987432111


Q ss_pred             eeeeeeccccccccceeEEEeecC------------CCcEEEEEecCCeEEEEecCCc----eEeEEeccccCCeEEEEE
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPT------------HTGMLAIGSYSQTSAIYREDNM----ELLYVLHGQEGGVTHVQF  273 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~------------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~  273 (304)
                        .    ...+|...|.+++|+|.            ++.++++|+.||.|++||++++    .+...+.+|...|++++|
T Consensus       139 --~----~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~  212 (753)
T 3jro_A          139 --I----IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW  212 (753)
T ss_dssp             --E----EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred             --e----EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEe
Confidence              1    12567788999999994            3779999999999999999876    667788899999999999


Q ss_pred             CCC---CcEEEEeeccCCeEEEEecccce
Q 022019          274 SRD---GNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       274 ~~~---~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      +|+   +.+|++++ .||.|++||+++++
T Consensus       213 sp~~~~~~~l~s~s-~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          213 SPTVLLRSYLASVS-QDRTCIIWTQDNEQ  240 (753)
T ss_dssp             CCCCSSSEEEEEEE-SSSCEEEEEESSSS
T ss_pred             ccCCCCCCEEEEEe-cCCEEEEecCCCCC
Confidence            999   89999999 99999999998864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-33  Score=234.07  Aligned_cols=211  Identities=10%  Similarity=0.022  Sum_probs=160.6

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ...+.+|.+.|++++|++++ .|++|+.||+|++||+.++..                .......|...|.++++     
T Consensus       259 ~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~----------------~~~~~~~H~~~V~sv~~-----  316 (524)
T 2j04_B          259 SLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEV----------------PSFYDQVHDSYILSVST-----  316 (524)
T ss_dssp             SEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSS----------------CSEEEECSSSCEEEEEE-----
T ss_pred             eEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCC----------------ceEEeecccccEEEEEE-----
Confidence            34678999999999999864 899999999999999975421                11134457788998843     


Q ss_pred             eeCCCc-cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcccee
Q 022019          133 ASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       133 ~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~  210 (304)
                      +++|++ .+|++|+.|++|+|||+++++....+..+..   ...|.+++|+|+++.++++ .|++|++||++.... .  
T Consensus       317 ~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~---~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~-~--  390 (524)
T 2j04_B          317 AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR---GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA-V--  390 (524)
T ss_dssp             ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS---CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC-C--
T ss_pred             EcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc---cCcccceEeCCCcCeEEEeCCCCcEEEEECccccc-c--
Confidence            236677 8999999999999999998876655554331   0147899999999988865 899999999987421 1  


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC------------------------------------
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN------------------------------------  254 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~------------------------------------  254 (304)
                       ..    ..+|...|.+++|+| ++.+|++|+.||+|++||+..                                    
T Consensus       391 -~~----l~gH~~~V~sva~Sp-~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~  464 (524)
T 2j04_B          391 -HP----LVSRETTITAIGVSR-LHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSY  464 (524)
T ss_dssp             -EE----EEECSSCEEEEECCS-SCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCC
T ss_pred             -ee----eecCCCceEEEEeCC-CCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCc
Confidence             11    246888999999999 677899999999999997421                                    


Q ss_pred             --------ceEeEEeccccCCeEEEEECCCCc---EEEEeeccCCeEEEEecccc
Q 022019          255 --------MELLYVLHGQEGGVTHVQFSRDGN---YLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       255 --------~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~d~~i~vwd~~~~  298 (304)
                              +..+..+.+|...|.+++|+|++.   +|++|+ .||.|+||+++-.
T Consensus       465 ~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~-~~g~vrlw~l~~~  518 (524)
T 2j04_B          465 EVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSN-SAGLLTLEYLSLE  518 (524)
T ss_dssp             CCCC-------------CCCSCCCEEECCSTTTTTEEEEEC-TTSEEEEEECSCC
T ss_pred             eecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhc-cCceEEEEEcccc
Confidence                    111233456788999999999964   899999 9999999999754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.9e-32  Score=227.71  Aligned_cols=224  Identities=15%  Similarity=0.199  Sum_probs=158.1

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (304)
                      .+.+|++.......    ...+.+|.+.|++|+|+| ++.+|+||+.||+|++||+.++...                 .
T Consensus       143 ~i~lWd~~~~~~~~----~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~-----------------~  201 (435)
T 4e54_B          143 DIMLWNFGIKDKPT----FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR-----------------V  201 (435)
T ss_dssp             CEEEECSSCCSCCE----EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE-----------------E
T ss_pred             EEEEEECCCCCcee----EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee-----------------E
Confidence            45556655443222    224568999999999998 7899999999999999998743211                 0


Q ss_pred             EEeec--CCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCc-EEEE
Q 022019          114 LVVTE--GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFA  190 (304)
Q Consensus       114 ~~~~~--~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~  190 (304)
                      +...+  ...+.+++|       +|++.+|++|+.||.|++||++. +....+..|.     ..|.+++|+|++. ++++
T Consensus       202 ~~~~~~~~~~~~~~~~-------~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~-----~~v~~v~~~p~~~~~~~s  268 (435)
T 4e54_B          202 FASSDTINIWFCSLDV-------SASSRMVVTGDNVGNVILLNMDG-KELWNLRMHK-----KKVTHVALNPCCDWFLAT  268 (435)
T ss_dssp             EECCSSCSCCCCCEEE-------ETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCS-----SCEEEEEECTTCSSEEEE
T ss_pred             EeccCCCCccEEEEEE-------CCCCCEEEEEeCCCcEeeeccCc-ceeEEEeccc-----ceEEeeeecCCCceEEEE
Confidence            11111  123344444       78999999999999999999864 4444455444     3899999999876 5555


Q ss_pred             E-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeE----------
Q 022019          191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY----------  259 (304)
Q Consensus       191 ~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~----------  259 (304)
                      + .|+.|++||++.......     .....+|...|++++|+| ++.+|++|+.||.|+|||++++....          
T Consensus       269 ~s~d~~v~iwd~~~~~~~~~-----~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~  342 (435)
T 4e54_B          269 ASVDQTVKIWDLRQVRGKAS-----FLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF  342 (435)
T ss_dssp             EETTSBCCEEETTTCCSSSC-----CSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC
T ss_pred             ecCcceeeEEecccccccce-----EEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceEEeccccccc
Confidence            5 999999999987432211     112256888999999999 77899999999999999986532111          


Q ss_pred             --------------------------------------------------Ee-ccccCCeEEE-EECCCCcEEEEeeccC
Q 022019          260 --------------------------------------------------VL-HGQEGGVTHV-QFSRDGNYLYTGGRKD  287 (304)
Q Consensus       260 --------------------------------------------------~~-~~~~~~v~~~-~~~~~~~~l~~~~~~d  287 (304)
                                                                        .+ .+|...|.++ +|+|+|.+|++|+  |
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~--d  420 (435)
T 4e54_B          343 QHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM--G  420 (435)
T ss_dssp             SSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC--S
T ss_pred             ccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc--C
Confidence                                                              11 1344556666 6999999998765  7


Q ss_pred             CeEEEEeccccee
Q 022019          288 PYILCWDLRKAVQ  300 (304)
Q Consensus       288 ~~i~vwd~~~~~~  300 (304)
                      +.|+||++++++.
T Consensus       421 ~~i~iW~~~~gk~  433 (435)
T 4e54_B          421 YHILIWSQQEART  433 (435)
T ss_dssp             SEEEECCCC----
T ss_pred             CcEEEEECCcCee
Confidence            8999999998864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.6e-31  Score=217.69  Aligned_cols=219  Identities=17%  Similarity=0.294  Sum_probs=171.1

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      +..|++.....      +..+.+|...|.+++|  ++.+|++|+.||.|++||+.....                .....
T Consensus       158 i~iwd~~~~~~------~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~----------------~~~~~  213 (401)
T 4aez_A          158 VDIYDVESQTK------LRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH----------------QIGTL  213 (401)
T ss_dssp             EEEEETTTCCE------EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC----------------EEEEE
T ss_pred             EEEEECcCCeE------EEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc----------------eeeEE
Confidence            44555554433      3467799999999999  467999999999999999974321                12244


Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcE-EEEE---
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK-IFAG---  191 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~---  191 (304)
                      ..|...|.+++|       +|++.+|++++.||.|++||+++++....+..+..     .|.+++|+|++.. ++++   
T Consensus       214 ~~~~~~v~~~~~-------~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~ll~~~~gs  281 (401)
T 4aez_A          214 QGHSSEVCGLAW-------RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA-----AVKAVAWCPWQSNLLATGGGT  281 (401)
T ss_dssp             ECCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS-----CCCEEEECTTSTTEEEEECCT
T ss_pred             cCCCCCeeEEEE-------cCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc-----eEEEEEECCCCCCEEEEecCC
Confidence            557788999988       77899999999999999999999888877765554     8999999997754 4454   


Q ss_pred             cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEE--ecCCeEEEEecCCceE--eEEeccccCC
Q 022019          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG--SYSQTSAIYREDNMEL--LYVLHGQEGG  267 (304)
Q Consensus       192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--~~dg~i~i~d~~~~~~--~~~~~~~~~~  267 (304)
                      .|+.|++||++...    ....+     .+...+.+++|+| ++.+++++  +.||.|++||+.++..  ...+.+|...
T Consensus       282 ~d~~i~i~d~~~~~----~~~~~-----~~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~  351 (401)
T 4aez_A          282 MDKQIHFWNAATGA----RVNTV-----DAGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR  351 (401)
T ss_dssp             TTCEEEEEETTTCC----EEEEE-----ECSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC
T ss_pred             CCCEEEEEECCCCC----EEEEE-----eCCCcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCC
Confidence            59999999998642    11222     2445699999999 66677774  4899999999998654  4456789999


Q ss_pred             eEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          268 VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       268 v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      |.+++|+|+|++|++++ .||.|++|++.+++.+
T Consensus       352 v~~~~~s~dg~~l~s~~-~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          352 VLYSALSPDGRILSTAA-SDENLKFWRVYDGDHV  384 (401)
T ss_dssp             CCEEEECTTSSEEEEEC-TTSEEEEEECCC----
T ss_pred             EEEEEECCCCCEEEEEe-CCCcEEEEECCCCccc
Confidence            99999999999999999 9999999999988754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.3e-31  Score=214.10  Aligned_cols=222  Identities=15%  Similarity=0.262  Sum_probs=169.3

Q ss_pred             ceeeeecCCCCceeEEEEcCC---CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEee
Q 022019           51 NQFRTSSIPNNFLKGIKWSPD---GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCW  127 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  127 (304)
                      +.+..+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+...               ........|...|.+++|
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------------~~~~~~~~h~~~v~~~~~   94 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------------TIPKAQQMHTGPVLDVCW   94 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------------EEEEEEEECSSCEEEEEE
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------------eeEEEeccccCCEEEEEE
Confidence            445578899999999999998   69999999999999999985211               111345567889999988


Q ss_pred             cCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEE--CCCCcEEEEE-cCCeEEEEEcCCC
Q 022019          128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF--NPTGTKIFAG-YNKSVRVFDVHRP  204 (304)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~-~d~~i~v~d~~~~  204 (304)
                             +|++++|++++.||.|++||+.+++..... .+.     ..|.+++|  +|++.+++++ .|+.|++||++..
T Consensus        95 -------~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~-----~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  161 (368)
T 3mmy_A           95 -------SDDGSKVFTASCDKTAKMWDLSSNQAIQIA-QHD-----APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS  161 (368)
T ss_dssp             -------CTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECS-----SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred             -------CcCCCEEEEEcCCCcEEEEEcCCCCceeec-ccc-----CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence                   779999999999999999999998876533 233     38999999  9999988865 9999999999874


Q ss_pred             Cccceeeee----------------------------------eeccccccccceeEEEeecCC---CcEEEEEecCCeE
Q 022019          205 GRDFEKYST----------------------------------LKGNKEGQAGIMSAIAFSPTH---TGMLAIGSYSQTS  247 (304)
Q Consensus       205 ~~~~~~~~~----------------------------------~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~i  247 (304)
                      ... ..+..                                  .......+...+.++.+.++.   ...+++++.||.|
T Consensus       162 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i  240 (368)
T 3mmy_A          162 NPM-MVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV  240 (368)
T ss_dssp             SCS-EEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEE
T ss_pred             cEE-EEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcE
Confidence            321 11110                                  000001122234455555411   1239999999999


Q ss_pred             EEEecCCc---eEeEEeccccC------------CeEEEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          248 AIYREDNM---ELLYVLHGQEG------------GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       248 ~i~d~~~~---~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      ++||++..   ..+..+.+|..            .|++++|+|++++|++++ .||.|++||+++++.+.
T Consensus       241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~  309 (368)
T 3mmy_A          241 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG-SDGRFSFWDKDARTKLK  309 (368)
T ss_dssp             EEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE-TTSCEEEEETTTTEEEE
T ss_pred             EEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc-cCCeEEEEECCCCcEEE
Confidence            99999877   56777777776            799999999999999999 99999999999987653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.4e-31  Score=217.60  Aligned_cols=232  Identities=12%  Similarity=0.137  Sum_probs=178.8

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCC---CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccc
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD---GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE  111 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  111 (304)
                      .+..|++........     ...+|.+.|.+++|+|+   +.+|++|+.||.|++||+.++..                .
T Consensus        45 ~v~iw~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~  103 (357)
T 3i2n_A           45 VIQLYEIQHGDLKLL-----REIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM----------------P  103 (357)
T ss_dssp             EEEEEEECSSSEEEE-----EEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS----------------C
T ss_pred             EEEEEeCCCCcccce-----eeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc----------------c
Confidence            355666665443321     23378999999999998   69999999999999999986541                1


Q ss_pred             eEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCe-eeEEeecccccccccceEEEE----ECCCCc
Q 022019          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVA----FNPTGT  186 (304)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~i~----~~~~~~  186 (304)
                      ......|...|.++.|.+. .+++|++++|++++.||.|++||+++++ ....+..+.. .....+.++.    |+|+++
T Consensus       104 ~~~~~~~~~~v~~~~~~~~-~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~  181 (357)
T 3i2n_A          104 VYSVKGHKEIINAIDGIGG-LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG-ENKRDCWTVAFGNAYNQEER  181 (357)
T ss_dssp             SEEECCCSSCEEEEEEESG-GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT-SCCCCEEEEEEECCCC-CCC
T ss_pred             EEEEEecccceEEEeeccc-cccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC-CCCCceEEEEEEeccCCCCC
Confidence            1133456788999988653 4568999999999999999999999876 5666654432 1233788888    788999


Q ss_pred             EEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecC--CCcEEEEEecCCeEEEEecCCceEeEEec-
Q 022019          187 KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYSQTSAIYREDNMELLYVLH-  262 (304)
Q Consensus       187 ~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-  262 (304)
                      +++++ .|+.|++||++....    ..     ...+...+.+++|+|.  ++.++++|+.||.|++||+++++++..+. 
T Consensus       182 ~l~~~~~d~~i~i~d~~~~~~----~~-----~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  252 (357)
T 3i2n_A          182 VVCAGYDNGDIKLFDLRNMAL----RW-----ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS  252 (357)
T ss_dssp             EEEEEETTSEEEEEETTTTEE----EE-----EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred             EEEEEccCCeEEEEECccCce----ee-----ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence            99966 899999999987421    11     1446678999999994  45689999999999999998877655554 


Q ss_pred             ----cccCCeEEEEECCCCc-EEEEeeccCCeEEEEecccce
Q 022019          263 ----GQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       263 ----~~~~~v~~~~~~~~~~-~l~~~~~~d~~i~vwd~~~~~  299 (304)
                          +|...|++++|+|+++ +|++++ .||.|++||++++.
T Consensus       253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          253 VSEKAHKSTVWQVRHLPQNRELFLTAG-GAGGLHLWKYEYPI  293 (357)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEEEEE-TTSEEEEEEEECCS
T ss_pred             eccCCCcCCEEEEEECCCCCcEEEEEe-CCCcEEEeecCCCc
Confidence                8999999999999998 799999 99999999998653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.4e-31  Score=237.60  Aligned_cols=212  Identities=20%  Similarity=0.266  Sum_probs=180.3

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      .+.+.+|.+.|++++|+|++.+|++++.||.|+|||+.++...                 .....|...|.+++|     
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~-----------------~~~~~~~~~v~~~~~-----   63 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV-----------------RSIQVTETPVRAGKF-----   63 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-----------------EEEECCSSCEEEEEE-----
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceE-----------------EEEecCCCcEEEEEE-----
Confidence            4577899999999999999999999999999999998764321                 133356688999988     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                        +|++++|++++.||.|++||+.+++....+..+..     .|.+++|+|++++|+++ .|+.|++||++....     
T Consensus        64 --s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----  131 (814)
T 3mkq_A           64 --IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-----YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-----  131 (814)
T ss_dssp             --EGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE-----
T ss_pred             --eCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-----CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce-----
Confidence              66899999999999999999999998888876654     89999999999999965 999999999976321     


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc-CCeEEEEECC--CCcEEEEeeccCC
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQFSR--DGNYLYTGGRKDP  288 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~~d~  288 (304)
                        ......+|...|.+++|+|.++..+++++.||.|++||+..+.+...+..+. ..+..++|+|  ++.+|++++ .||
T Consensus       132 --~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg  208 (814)
T 3mkq_A          132 --LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDL  208 (814)
T ss_dssp             --EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTS
T ss_pred             --EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCC
Confidence              1222256788899999999667799999999999999999888777776555 7899999999  999999999 999


Q ss_pred             eEEEEecccceee
Q 022019          289 YILCWDLRKAVQV  301 (304)
Q Consensus       289 ~i~vwd~~~~~~~  301 (304)
                      .|++||+++++.+
T Consensus       209 ~i~~~d~~~~~~~  221 (814)
T 3mkq_A          209 TIKIWDYQTKSCV  221 (814)
T ss_dssp             EEEEEETTTTEEE
T ss_pred             EEEEEECCCCcEE
Confidence            9999999988654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2e-30  Score=218.36  Aligned_cols=224  Identities=17%  Similarity=0.234  Sum_probs=174.4

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..|+.....      .+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.++...                 ..
T Consensus       143 ~i~vwd~~~~~------~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~-----------------~~  198 (464)
T 3v7d_B          143 MIRVYDSINKK------FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT-----------------HV  198 (464)
T ss_dssp             CEEEEETTTTE------EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEE-----------------EE
T ss_pred             cEEEEECCCCc------EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEE-----------------EE
Confidence            34556655443      334678999999999999988 9999999999999999865322                 13


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecc------------------cccccccce
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY------------------DAVDEITAA  176 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------~~~~~~~~v  176 (304)
                      ...|...|.+++|.+     .+++.++++++.||.|++||+.++.........                  ....+...+
T Consensus       199 ~~~h~~~v~~l~~~~-----~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  273 (464)
T 3v7d_B          199 FEGHNSTVRCLDIVE-----YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV  273 (464)
T ss_dssp             ECCCSSCEEEEEEEE-----SSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE
T ss_pred             ECCCCCccEEEEEec-----CCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE
Confidence            334678899998854     468889999999999999999876533211000                  001223356


Q ss_pred             EEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc
Q 022019          177 FSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (304)
Q Consensus       177 ~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~  255 (304)
                      .++  ++++++++++ .|+.|++||+++.    ..    .....+|...|.+++|+| ++.++++|+.||.|++||++++
T Consensus       274 ~~~--~~~~~~l~~~~~d~~i~vwd~~~~----~~----~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          274 RTV--SGHGNIVVSGSYDNTLIVWDVAQM----KC----LYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENG  342 (464)
T ss_dssp             EEE--EEETTEEEEEETTSCEEEEETTTT----EE----EEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTT
T ss_pred             EEE--cCCCCEEEEEeCCCeEEEEECCCC----cE----EEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Confidence            665  5678888865 9999999999863    11    122256888899999999 7789999999999999999999


Q ss_pred             eEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       256 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +++..+.+|...|.++.|+  +.+|++++ .||.|++||+++++..
T Consensus       343 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s-~dg~v~vwd~~~~~~~  385 (464)
T 3v7d_B          343 ELMYTLQGHTALVGLLRLS--DKFLVSAA-ADGSIRGWDANDYSRK  385 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEC--SSEEEEEE-TTSEEEEEETTTCCEE
T ss_pred             cEEEEEeCCCCcEEEEEEc--CCEEEEEe-CCCcEEEEECCCCcee
Confidence            9999999999999999997  57999999 9999999999987654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=4.9e-31  Score=214.37  Aligned_cols=209  Identities=11%  Similarity=0.129  Sum_probs=147.7

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      ...+|.+.|++++|+|||++|++|+.|+ +++|++.+....                   ...+...+..+.+       
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-------------------~~~~~~~~~~~~~-------   66 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-------------------MSQEMRHLSKVRM-------   66 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-------------------EEEECSCCCEEEE-------
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-------------------eeeecCCeEEEEE-------
Confidence            4578999999999999999999998775 789998643221                   1111112333444       


Q ss_pred             CCCccEE-EEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCc---------------------------
Q 022019          135 DPTSCVF-ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT---------------------------  186 (304)
Q Consensus       135 ~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~---------------------------  186 (304)
                      .++++.+ ++++.|++|++||+.+++....+....      .|.++.|+++..                           
T Consensus        67 ~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~------~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~  140 (355)
T 3vu4_A           67 LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDA------PVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFG  140 (355)
T ss_dssp             CTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSS------CEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEE
T ss_pred             cCCCCEEEEEECCccEEEEEECCCCcEEEEEECCC------ceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCC
Confidence            4455555 567788999999999998887776432      677888876531                           


Q ss_pred             --------EEE-E-E-cCCeEEEEEcCCCCcccee--------eeeeeccccccccceeEEEeecCCCcEEEEEecCCe-
Q 022019          187 --------KIF-A-G-YNKSVRVFDVHRPGRDFEK--------YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-  246 (304)
Q Consensus       187 --------~l~-~-~-~d~~i~v~d~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-  246 (304)
                              +++ + | .+|.|++||++........        +........+|...|.+++|+| ++.+|++|+.||+ 
T Consensus       141 ~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~  219 (355)
T 3vu4_A          141 GVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTI  219 (355)
T ss_dssp             EEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSE
T ss_pred             ceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCE
Confidence                    222 1 2 4455555555432100000        0000223467899999999999 7889999999998 


Q ss_pred             EEEEecCCceEeEEec-c-ccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          247 SAIYREDNMELLYVLH-G-QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       247 i~i~d~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      |++||+++++++..+. + |...|++++|+|+|++|++++ .|++|++||++++
T Consensus       220 v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s-~d~~v~iw~~~~~  272 (355)
T 3vu4_A          220 IRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS-DKWTLHVFEIFND  272 (355)
T ss_dssp             EEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE-TTCEEEEEESSCC
T ss_pred             EEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE-CCCEEEEEEccCC
Confidence            9999999999999998 5 999999999999999999999 9999999999765

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.6e-31  Score=217.95  Aligned_cols=234  Identities=13%  Similarity=0.265  Sum_probs=178.8

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCC----CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCcc
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD----GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSY  110 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~----~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  110 (304)
                      .+..|+............. ....|...|++++|+|+    +.+|++|+.||.|++||+.+++..               
T Consensus        45 ~v~vw~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~---------------  108 (366)
T 3k26_A           45 RVTLYECHSQGEIRLLQSY-VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI---------------  108 (366)
T ss_dssp             EEEEEEECGGGCEEEEEEE-ECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEE---------------
T ss_pred             EEEEEEcCCCcEEEeeeec-cccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEe---------------
Confidence            3566766655444322211 22247889999999998    679999999999999999865332               


Q ss_pred             ceEEEeecCCeEEEEeecCccceeCC-CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE
Q 022019          111 EASLVVTEGESVYDFCWFPHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (304)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  189 (304)
                        .....|...|.+++|       +| ++.+|++++.||.|++||+++++....+....  .+...|.+++|+|++.+|+
T Consensus       109 --~~~~~~~~~i~~~~~-------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~  177 (366)
T 3k26_A          109 --KHYVGHGNAINELKF-------HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE--GHRDEVLSADYDLLGEKIM  177 (366)
T ss_dssp             --EEEESCCSCEEEEEE-------CSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT--SCSSCEEEEEECTTSSEEE
T ss_pred             --eeecCCCCcEEEEEE-------CCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc--cccCceeEEEECCCCCEEE
Confidence              123346788999988       66 78899999999999999999998877763211  2334899999999999999


Q ss_pred             EE-cCCeEEEEEcCCCCccceeee---------------------eeeccccccccceeEEEeecCCCcEEEEEecCCeE
Q 022019          190 AG-YNKSVRVFDVHRPGRDFEKYS---------------------TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTS  247 (304)
Q Consensus       190 ~~-~d~~i~v~d~~~~~~~~~~~~---------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i  247 (304)
                      ++ .|+.|++||++..... ..+.                     ........|...|.+++|++   .++++++.||.|
T Consensus       178 ~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d~~i  253 (366)
T 3k26_A          178 SCGMDHSLKLWRINSKRMM-NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG---DLILSKSCENAI  253 (366)
T ss_dssp             EEETTSCEEEEESCSHHHH-HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEET---TEEEEECSSSEE
T ss_pred             EecCCCCEEEEECCCCccc-cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcC---CEEEEEecCCEE
Confidence            65 9999999999863211 0000                     00111234788899999983   489999999999


Q ss_pred             EEEecCCce--------------EeEEeccccCCeEEEEECCC--CcEEEEeeccCCeEEEEeccccee
Q 022019          248 AIYREDNME--------------LLYVLHGQEGGVTHVQFSRD--GNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       248 ~i~d~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      ++||++++.              .+..+.+|...|++++|+|+  +++|++++ .||.|++||+.+++.
T Consensus       254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~vwd~~~~~~  321 (366)
T 3k26_A          254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN-QVGKLYVWDLEVEDP  321 (366)
T ss_dssp             EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC-TTSCEEEEECCSSSG
T ss_pred             EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe-cCCcEEEEECCCCCC
Confidence            999998763              47788899999999999999  99999999 999999999998753

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.6e-32  Score=225.86  Aligned_cols=236  Identities=13%  Similarity=0.177  Sum_probs=169.2

Q ss_pred             ceeeeecCCC------------CceeEEEEcCCC--CeEEEecCCCeEEEeeCCCCCCcccccccccc--------ccCC
Q 022019           51 NQFRTSSIPN------------NFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYDVNACSLA--------KDQD  108 (304)
Q Consensus        51 ~~~~~~~~h~------------~~V~~i~~s~~~--~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~--------~~~~  108 (304)
                      +....+.+|.            +.|++++|+|++  .+|++++.||+|++||+.++............        ....
T Consensus        72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  151 (447)
T 3dw8_B           72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT  151 (447)
T ss_dssp             EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCS
T ss_pred             eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccc
Confidence            3455788998            889999999998  79999999999999998754321100000000        0000


Q ss_pred             ---------------ccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCC-CeeeEEeecc--ccc
Q 022019          109 ---------------SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-GLLRCTYRAY--DAV  170 (304)
Q Consensus       109 ---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~--~~~  170 (304)
                                     .....+...|...|.+++|       +|++++|++| .|+.|++||+++ ++....+...  ...
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-------~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~  223 (447)
T 3dw8_B          152 LRVPVFRPMDLMVEASPRRIFANAHTYHINSISI-------NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANME  223 (447)
T ss_dssp             CCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE-------CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGG
T ss_pred             eEeccccchheeeeccceEEeccCCCcceEEEEE-------cCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccccc
Confidence                           0000112346677888877       7789999998 799999999984 3333322111  112


Q ss_pred             ccccceEEEEECCCC-cEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccc------------cceeEEEeecCCCc
Q 022019          171 DEITAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA------------GIMSAIAFSPTHTG  236 (304)
Q Consensus       171 ~~~~~v~~i~~~~~~-~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~p~~~~  236 (304)
                      .+...|.+++|+|++ ++|+++ .|+.|++||++...........+    ..|.            ..|.+++|+| ++.
T Consensus       224 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~  298 (447)
T 3dw8_B          224 ELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLF----EEPEDPSNRSFFSEIISSISDVKFSH-SGR  298 (447)
T ss_dssp             GCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEE----CCC-----CCHHHHHTTCEEEEEECT-TSS
T ss_pred             ccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEe----ccCCCccccccccccCceEEEEEECC-CCC
Confidence            344589999999998 888865 99999999998753211111222    3333            3899999999 788


Q ss_pred             EEEEEecCCeEEEEecCC-ceEeEEeccccCC---------------eEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          237 MLAIGSYSQTSAIYREDN-MELLYVLHGQEGG---------------VTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       237 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      +|++++. +.|++||++. ++++..+.+|...               +..++|+|++++|++++ .||.|++||+.+++.
T Consensus       299 ~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s-~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          299 YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS-YNNFFRMFDRNTKRD  376 (447)
T ss_dssp             EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC-STTEEEEEETTTCCE
T ss_pred             EEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEec-cCCEEEEEEcCCCcc
Confidence            9999998 9999999997 8888888888642               33499999999999999 999999999998876


Q ss_pred             e
Q 022019          301 V  301 (304)
Q Consensus       301 ~  301 (304)
                      +
T Consensus       377 ~  377 (447)
T 3dw8_B          377 I  377 (447)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.6e-30  Score=233.27  Aligned_cols=224  Identities=17%  Similarity=0.275  Sum_probs=183.6

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..|+.......      ..+.+|.+.|++++|+|++++|++++.||.|++||+.++...                 ..
T Consensus        36 ~v~iwd~~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~-----------------~~   92 (814)
T 3mkq_A           36 RVEIWNYETQVEV------RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-----------------VD   92 (814)
T ss_dssp             EEEEEETTTTEEE------EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE-----------------EE
T ss_pred             EEEEEECCCCceE------EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE-----------------EE
Confidence            4556776655433      367799999999999999999999999999999999865432                 12


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCC-eeeEEeecccccccccceEEEEECC-CCcEEEEE-
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-  191 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-  191 (304)
                      ...|...|.+++|       +|++.+|++++.||.|++||+.++ .....+..+..     .|.+++|+| ++..++++ 
T Consensus        93 ~~~~~~~v~~~~~-------s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A           93 FEAHPDYIRSIAV-------HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-----FVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             EECCSSCEEEEEE-------CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS-----CEEEEEEETTEEEEEEEEE
T ss_pred             EecCCCCEEEEEE-------eCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC-----cEEEEEEEcCCCCEEEEEe
Confidence            3446688999988       778999999999999999999886 55566665544     899999999 78888855 


Q ss_pred             cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecC-CCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEE
Q 022019          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT-HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH  270 (304)
Q Consensus       192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~  270 (304)
                      .||.|++||++......    .+.   ..+...+.+++|+|. ++.+|++|+.||.|++||+++++++..+.+|...|.+
T Consensus       161 ~dg~v~vwd~~~~~~~~----~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~  233 (814)
T 3mkq_A          161 LDRTVKVWSLGQSTPNF----TLT---TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF  233 (814)
T ss_dssp             TTSEEEEEETTCSSCSE----EEE---CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             CCCeEEEEECCCCccee----EEe---cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence            99999999997643211    111   334467999999983 4568999999999999999999999999999999999


Q ss_pred             EEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       271 ~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      ++|+|+|++|++++ .||.|++||+.+++.+
T Consensus       234 ~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~~  263 (814)
T 3mkq_A          234 AVFHPTLPIIISGS-EDGTLKIWNSSTYKVE  263 (814)
T ss_dssp             EEECSSSSEEEEEE-TTSCEEEEETTTCSEE
T ss_pred             EEEcCCCCEEEEEe-CCCeEEEEECCCCcEE
Confidence            99999999999999 9999999999987654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-31  Score=221.65  Aligned_cols=236  Identities=17%  Similarity=0.283  Sum_probs=179.0

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..|+.........   + ....|...|++++|+|++.+|++++.||.|++||+.+....             ......
T Consensus        46 ~v~iw~~~~~~~~~~---~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~-------------~~~~~~  108 (416)
T 2pm9_A           46 SLELWSLLAADSEKP---I-ASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA-------------INSMAR  108 (416)
T ss_dssp             CCEEEESSSGGGCSC---S-CCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC-------------CCEEEE
T ss_pred             eEEEEEccCCCCCcE---E-EEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc-------------ccchhh
Confidence            456677665543211   1 12358999999999999999999999999999999752110             011223


Q ss_pred             EeecCCeEEEEeecCccceeCCC-ccEEEEEeCCCCEEEEEcCCCe------eeEEeecccccccccceEEEEECCC-Cc
Q 022019          115 VVTEGESVYDFCWFPHMSASDPT-SCVFASTTRDHPIHLWDATTGL------LRCTYRAYDAVDEITAAFSVAFNPT-GT  186 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~~v~~i~~~~~-~~  186 (304)
                      ...|...|.+++|       +|+ +.+|++++.||.|++||+.+++      ....+.  ....+...|.+++|+|+ +.
T Consensus       109 ~~~h~~~v~~~~~-------~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~  179 (416)
T 2pm9_A          109 FSNHSSSVKTVKF-------NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG--QSMSSVDEVISLAWNQSLAH  179 (416)
T ss_dssp             CCCSSSCCCEEEE-------CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC--CSCCSSCCCCEEEECSSCTT
T ss_pred             ccCCccceEEEEE-------cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc--cccCCCCCeeEEEeCCCCCc
Confidence            3456678888888       666 7899999999999999999876      222221  11234448999999999 67


Q ss_pred             EEEEE-cCCeEEEEEcCCCCccceeeeeeec--cccccccceeEEEeecCCCcEEEEEecCC---eEEEEecCCc-eEeE
Q 022019          187 KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG--NKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNM-ELLY  259 (304)
Q Consensus       187 ~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~i~d~~~~-~~~~  259 (304)
                      +++++ .|+.|++||++...    ....+..  ...+|...+.+++|+|++..++++++.|+   .|++||++++ .++.
T Consensus       180 ~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~  255 (416)
T 2pm9_A          180 VFASAGSSNFASIWDLKAKK----EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ  255 (416)
T ss_dssp             EEEEESSSSCEEEEETTTTE----EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB
T ss_pred             EEEEEcCCCCEEEEECCCCC----cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE
Confidence            88866 99999999998742    1122111  11233678999999996668999999999   9999999986 6778


Q ss_pred             Eec-cccCCeEEEEECC-CCcEEEEeeccCCeEEEEecccceee
Q 022019          260 VLH-GQEGGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       260 ~~~-~~~~~v~~~~~~~-~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      .+. +|...|++++|+| ++.+|++++ .||.|++||+++++.+
T Consensus       256 ~~~~~~~~~v~~~~~s~~~~~~l~s~~-~dg~v~~wd~~~~~~~  298 (416)
T 2pm9_A          256 TLNQGHQKGILSLDWCHQDEHLLLSSG-RDNTVLLWNPESAEQL  298 (416)
T ss_dssp             CCCSCCSSCEEEEEECSSCSSCEEEEE-SSSEEEEECSSSCCEE
T ss_pred             EeecCccCceeEEEeCCCCCCeEEEEe-CCCCEEEeeCCCCccc
Confidence            888 8999999999999 999999999 9999999999988665

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-31  Score=222.27  Aligned_cols=219  Identities=11%  Similarity=0.097  Sum_probs=165.0

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCC---CCCCccccccccccccCCccceEEEee---cCCeEEEEeecCcc
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLP---ENGISYDVNACSLAKDQDSYEASLVVT---EGESVYDFCWFPHM  131 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~  131 (304)
                      +|.+.|++++|+|++.+|++|+.||+|++||+.   ++.........        ....+...   +...+.++.+    
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~~~~~~~~~~----  176 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--------CIRKINLKNFGKNEYAVRMRA----  176 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--------EEEEEEGGGGSSCCCEEEEEE----
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc--------eeEEEEccCcccccCceEEEE----
Confidence            599999999999999999999999999999985   22211100000        00001111   2334444443    


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcccee
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~  210 (304)
                       .+++++.+|++++.||.|++||+++++....+..+.   +...|.+++|+|++++|++| .||.|++||++..    ..
T Consensus       177 -~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~  248 (437)
T 3gre_A          177 -FVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP---RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN----VL  248 (437)
T ss_dssp             -EECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG---GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT----EE
T ss_pred             -EEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC---CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc----cE
Confidence             247889999999999999999999999888887621   22389999999999999965 9999999999863    11


Q ss_pred             eeeeeccccccccceeEEEeecC---CCcEEEEEecCCeEEEEecCCceEeEEecc------------------------
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPT---HTGMLAIGSYSQTSAIYREDNMELLYVLHG------------------------  263 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------------  263 (304)
                      ...+.   ..|...|.+++|+|.   ++.+|++|+.||.|++||+++++++..+.+                        
T Consensus       249 ~~~~~---~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  325 (437)
T 3gre_A          249 IRSWS---FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG  325 (437)
T ss_dssp             EEEEB---CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred             EEEEe---cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence            12211   256668999966652   577999999999999999999988877764                        


Q ss_pred             --ccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          264 --QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       264 --~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                        |...|++++|+ ++++|++++ .|+.|++||+.+++.+
T Consensus       326 ~~~~~~v~~l~~~-~~~~l~s~~-~d~~i~~wd~~~~~~~  363 (437)
T 3gre_A          326 IRSLNALSTISVS-NDKILLTDE-ATSSIVMFSLNELSSS  363 (437)
T ss_dssp             CCSGGGGCCEEEE-TTEEEEEEG-GGTEEEEEETTCGGGC
T ss_pred             cccCCceEEEEEC-CceEEEecC-CCCeEEEEECCCcccc
Confidence              44568888998 779999999 9999999999988654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-30  Score=204.69  Aligned_cols=217  Identities=12%  Similarity=0.187  Sum_probs=173.5

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      +..|+.......      ..+..|.+.|.+++|+|++++|++++.||.|++|++.......              .....
T Consensus        41 v~vw~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~--------------~~~~~  100 (313)
T 3odt_A           41 VRLWSKDDQWLG------TVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED--------------PLYTL  100 (313)
T ss_dssp             EEEEEESSSEEE------EEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC--------------C-CEE
T ss_pred             EEEEECCCCEEE------EEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC--------------cccch
Confidence            455555444333      3667899999999999999999999999999999987542211              11133


Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECC-CCcEEEEE-cC
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-YN  193 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d  193 (304)
                      ..|...+.++.|         +++++++++.||.|++||  .++....+..+..     .+.++.|+| ++..++++ .|
T Consensus       101 ~~~~~~i~~~~~---------~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~d  164 (313)
T 3odt_A          101 IGHQGNVCSLSF---------QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA-----SVWDAKVVSFSENKFLTASAD  164 (313)
T ss_dssp             CCCSSCEEEEEE---------ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS-----CEEEEEEEETTTTEEEEEETT
T ss_pred             hhcccCEEEEEe---------cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC-----ceeEEEEccCCCCEEEEEECC
Confidence            456688888887         466899999999999999  5666666666554     899999988 88888855 99


Q ss_pred             CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEE
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF  273 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  273 (304)
                      +.|++||...      ....+   ...+...+.+++|+| ++. +++++.||.|++||+++++++..+.+|...|++++|
T Consensus       165 ~~i~i~d~~~------~~~~~---~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  233 (313)
T 3odt_A          165 KTIKLWQNDK------VIKTF---SGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKL  233 (313)
T ss_dssp             SCEEEEETTE------EEEEE---CSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             CCEEEEecCc------eEEEE---eccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEE
Confidence            9999999432      11111   133778899999999 665 899999999999999999999999999999999999


Q ss_pred             CCCCcEEEEeeccCCeEEEEecccceee
Q 022019          274 SRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       274 ~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +|++ .|++++ .||.|++||+++++.+
T Consensus       234 ~~~~-~l~~~~-~dg~v~iwd~~~~~~~  259 (313)
T 3odt_A          234 LPNG-DIVSCG-EDRTVRIWSKENGSLK  259 (313)
T ss_dssp             CTTS-CEEEEE-TTSEEEEECTTTCCEE
T ss_pred             ecCC-CEEEEe-cCCEEEEEECCCCcee
Confidence            9999 588888 9999999999988654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=6.4e-32  Score=222.55  Aligned_cols=218  Identities=13%  Similarity=0.070  Sum_probs=151.8

Q ss_pred             eeeecCCCCceeEEEEcC--------CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEE
Q 022019           53 FRTSSIPNNFLKGIKWSP--------DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD  124 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~--------~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  124 (304)
                      +..+.+|.+.|++++|+|        |+++||||+.|++|+|||+.++.                 .......+...+.+
T Consensus       129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~-----------------~~~~~~~~~~~v~~  191 (393)
T 4gq1_A          129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG-----------------PILAGYPLSSPGIS  191 (393)
T ss_dssp             ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE-----------------EEEEEEECSSCEEE
T ss_pred             ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc-----------------eeeeecCCCCCcEE
Confidence            346789999999999998        78999999999999999986432                 22245567788999


Q ss_pred             EeecCccceeCCCc-cEEEEEeCCCCEEEEEcCCCeeeEEeeccc--------------------ccccccceEEEEEC-
Q 022019          125 FCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYD--------------------AVDEITAAFSVAFN-  182 (304)
Q Consensus       125 ~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------------~~~~~~~v~~i~~~-  182 (304)
                      ++|+|       ++ .+|++++.||+|++||+++++.........                    ...+...+.++.|+ 
T Consensus       192 v~~~p-------~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~  264 (393)
T 4gq1_A          192 VQFRP-------SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG  264 (393)
T ss_dssp             EEEET-------TEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEET
T ss_pred             EEECC-------CCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeec
Confidence            99854       54 589999999999999999876543322110                    11244567888886 


Q ss_pred             CCCcEEEEE-cCCeEEEEEcCCCCccceeeeee------------eccccccccceeEEEeecCCCcEEEEEecCCeEEE
Q 022019          183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTL------------KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAI  249 (304)
Q Consensus       183 ~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~------------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  249 (304)
                      |+++.++++ .|+.+++||+....... .+...            ......+...+..+.+.+.++.++++|+.||.|++
T Consensus       265 ~dg~~l~s~s~d~~i~vwd~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~l  343 (393)
T 4gq1_A          265 SDGSGILAMCKSGAWLRWNLFANNDYN-EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQL  343 (393)
T ss_dssp             TTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEE
T ss_pred             CCCCEEEEEeCCCCEEEEECccCCCCc-eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEE
Confidence            799999966 99999999997632111 00000            00001111222333333334557778889999999


Q ss_pred             EecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          250 YREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       250 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      ||+.+++++..+.+|..+|.+++|+|||++|++++ .+| +.+|.+..
T Consensus       344 wd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as-~~G-v~lvrL~g  389 (393)
T 4gq1_A          344 INTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT-EGS-VLLTRLMG  389 (393)
T ss_dssp             EETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE-SSE-EEEEEEGG
T ss_pred             EECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe-CCC-eEEEEEeC
Confidence            99999988888888999999999999999999998 555 77777654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.2e-30  Score=214.48  Aligned_cols=225  Identities=12%  Similarity=0.080  Sum_probs=169.1

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (304)
                      .+..|+........    .....+|.+.|.+++|+| ++.+|++++.||.|++||+.+...                 ..
T Consensus        97 ~i~iwd~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------~~  155 (383)
T 3ei3_B           97 DIILWDYDVQNKTS----FIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI-----------------QV  155 (383)
T ss_dssp             CEEEEETTSTTCEE----EECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-----------------EE
T ss_pred             eEEEEeCCCcccce----eeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-----------------EE
Confidence            34566665443332    112347999999999999 789999999999999999974211                 00


Q ss_pred             EE--eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCc-EEEE
Q 022019          114 LV--VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFA  190 (304)
Q Consensus       114 ~~--~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~  190 (304)
                      +.  ..+...+.+++|       +|++++|++++.|+.|++||+ +++....+..+..     .|.+++|+|+++ ++++
T Consensus       156 ~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s  222 (383)
T 3ei3_B          156 FAKTDSWDYWYCCVDV-------SVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKA-----KVTHAEFNPRCDWLMAT  222 (383)
T ss_dssp             EECCCCSSCCEEEEEE-------ETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSS-----CEEEEEECSSCTTEEEE
T ss_pred             EeccCCCCCCeEEEEE-------CCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCC-----cEEEEEECCCCCCEEEE
Confidence            11  112366888887       678999999999999999999 4666677765554     899999999998 7775


Q ss_pred             E-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc----
Q 022019          191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE----  265 (304)
Q Consensus       191 ~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----  265 (304)
                      + .|+.|++||++...........     .+|...|.+++|+|.++.+|++++.|+.|++||+++++.+..+.+|.    
T Consensus       223 ~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  297 (383)
T 3ei3_B          223 SSVDATVKLWDLRNIKDKNSYIAE-----MPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF  297 (383)
T ss_dssp             EETTSEEEEEEGGGCCSTTCEEEE-----EECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred             EeCCCEEEEEeCCCCCcccceEEE-----ecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence            5 9999999999874322222222     24778899999999556689999999999999999887766665443    


Q ss_pred             -------------CCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          266 -------------GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       266 -------------~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                                   ..+..++|+|+|++  +++ .|+.|++||+.+++.+
T Consensus       298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s-~d~~i~iwd~~~~~~~  343 (383)
T 3ei3_B          298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLN-DKRTIDIYDANSGGLV  343 (383)
T ss_dssp             TTSCCCCCEECSSSSEEEEECBCCTTT--CTT-CCCCEEEEETTTCCEE
T ss_pred             ccccceEEeccCCCCceEEEecCCccc--ccC-CCCeEEEEecCCCcee
Confidence                         34455677777776  677 8999999999988764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.1e-30  Score=211.36  Aligned_cols=158  Identities=11%  Similarity=0.050  Sum_probs=128.3

Q ss_pred             cceeCCCccEEEEE--eCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccc
Q 022019          131 MSASDPTSCVFAST--TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       131 ~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~  208 (304)
                      .++|+|||++++++  +.|++|++||+.+++....+....      .|.+++|+|+|++++++.++.+.+|+...+..  
T Consensus       138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~------~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~--  209 (365)
T 4h5i_A          138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRG------EVKDLHFSTDGKVVAYITGSSLEVISTVTGSC--  209 (365)
T ss_dssp             EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSS------CCCEEEECTTSSEEEEECSSCEEEEETTTCCE--
T ss_pred             EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCC------ceEEEEEccCCceEEeccceeEEEEEeccCcc--
Confidence            35679999997655  478999999999998887765322      79999999999999988777888888776422  


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEecCC----eEEEEecCCceE----eEEeccccCCeEEEEECCCCcEE
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ----TSAIYREDNMEL----LYVLHGQEGGVTHVQFSRDGNYL  280 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l  280 (304)
                          ........|...+.+++|+| ++.++++++.|+    .+++|++.....    ...+.+|...|++++|+|||++|
T Consensus       210 ----~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~l  284 (365)
T 4h5i_A          210 ----IARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELA  284 (365)
T ss_dssp             ----EEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEE
T ss_pred             ----eeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCce
Confidence                11122356778899999999 778899998887    688899876543    45677899999999999999999


Q ss_pred             EEeeccCCeEEEEecccceeee
Q 022019          281 YTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       281 ~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      ++|+ .|++|+|||+++++.+.
T Consensus       285 asgs-~D~~V~iwd~~~~~~~~  305 (365)
T 4h5i_A          285 VLAS-NDNSIALVKLKDLSMSK  305 (365)
T ss_dssp             EEEE-TTSCEEEEETTTTEEEE
T ss_pred             EEEc-CCCEEEEEECCCCcEEE
Confidence            9999 99999999999988763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=1.2e-30  Score=204.28  Aligned_cols=218  Identities=16%  Similarity=0.077  Sum_probs=141.0

Q ss_pred             ceeEEEEcCC----CCeEEEecCCCeEEEeeCCCCCCccccc-cc-----cccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           62 FLKGIKWSPD----GSSFLTSSEDKTLRIFSLPENGISYDVN-AC-----SLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        62 ~V~~i~~s~~----~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      .|..++|+|+    +.++++++.  .+++|++.+++...... .+     ......+.........|...+..++|.|. 
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~-  189 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV-  189 (356)
T ss_dssp             EEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE-
T ss_pred             ceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc-
Confidence            5667777777    778887764  36677775544322100 00     00000111111122233344444444221 


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE------------EE-cCCeEEE
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF------------AG-YNKSVRV  198 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~------------~~-~d~~i~v  198 (304)
                         ..++..|++++.|++|+|||+.+++.+.++..+..  +...+.+++|+|+|.+++            +| .|++|++
T Consensus       190 ---~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~--~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIkl  264 (356)
T 2w18_A          190 ---QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS--YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIV  264 (356)
T ss_dssp             ---ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-----CCCEEEEEEETTEEEEEEC------------CCEEEEE
T ss_pred             ---CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc--ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEE
Confidence               22778999999999999999999999998875432  223678889999998873            34 7899999


Q ss_pred             EEcCCCCccceeeeeeec-cccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeE-EEEECCC
Q 022019          199 FDVHRPGRDFEKYSTLKG-NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT-HVQFSRD  276 (304)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~  276 (304)
                      ||..++ ...   ..+.. ...+|...+.+..++   +.++++|+.|++|+|||+.+++++.++.+|...+. .++|+||
T Consensus       265 Wd~~tg-k~l---~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD  337 (356)
T 2w18_A          265 INPKTT-LSV---GVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT  337 (356)
T ss_dssp             EETTTT-EEE---EEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS
T ss_pred             EECCCC-EEE---EEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC
Confidence            999763 111   11110 123554444333333   55899999999999999999999999999987655 5899999


Q ss_pred             CcEEEEeeccCCeEEEEec
Q 022019          277 GNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       277 ~~~l~~~~~~d~~i~vwd~  295 (304)
                      |++|++|+ .|++|+|||+
T Consensus       338 G~~LaSGS-~D~TIklWd~  355 (356)
T 2w18_A          338 DSHLLAGQ-KDGNIFVYHY  355 (356)
T ss_dssp             SSEEEEEC-TTSCEEEEEE
T ss_pred             CCEEEEEE-CCCcEEEecC
Confidence            99999999 9999999996

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.98  E-value=2.6e-30  Score=215.55  Aligned_cols=218  Identities=17%  Similarity=0.290  Sum_probs=168.4

Q ss_pred             eecCCCCceeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           55 TSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      ...+|.+.|++++|+|+ +.+|++++.||.|++|++.+......       .............|...+.+++|      
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~l~~------  189 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------PSGECQPDLRLRGHQKEGYGLSW------  189 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------TTCCCCCSEEEECCSSCCCCEEE------
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------ccccCCCcEEecCCCCCeEEEEe------
Confidence            45679999999999997 77999999999999999975321110       00011222344567778888888      


Q ss_pred             eCCCcc-EEEEEeCCCCEEEEEcCCCee-------eEEeecccccccccceEEEEECC-CCcEEEEE-cCCeEEEEEcCC
Q 022019          134 SDPTSC-VFASTTRDHPIHLWDATTGLL-------RCTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-YNKSVRVFDVHR  203 (304)
Q Consensus       134 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~-~d~~i~v~d~~~  203 (304)
                       +|++. +|++|+.||.|++||+..+..       ...+..     +...|.+++|+| ++.+++++ .|+.|++||++.
T Consensus       190 -~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-----h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~  263 (430)
T 2xyi_A          190 -NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG-----HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN  263 (430)
T ss_dssp             -CTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC-----CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             -CCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC-----CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence             66776 999999999999999987432       122333     334899999999 66777755 999999999987


Q ss_pred             CCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC-ceEeEEeccccCCeEEEEECCCCc-EEE
Q 022019          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVQFSRDGN-YLY  281 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~  281 (304)
                      .... .....    ...|...|++++|+|++..+|++|+.||.|++||+++ ..++..+.+|...|++++|+|+++ +|+
T Consensus       264 ~~~~-~~~~~----~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~  338 (430)
T 2xyi_A          264 NNTS-KPSHT----VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA  338 (430)
T ss_dssp             SCSS-SCSEE----EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred             CCCC-cceeE----eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE
Confidence            4211 11111    1467788999999996666899999999999999998 567888999999999999999995 688


Q ss_pred             EeeccCCeEEEEeccc
Q 022019          282 TGGRKDPYILCWDLRK  297 (304)
Q Consensus       282 ~~~~~d~~i~vwd~~~  297 (304)
                      +++ .||.|++||++.
T Consensus       339 s~~-~d~~i~iwd~~~  353 (430)
T 2xyi_A          339 SSG-TDRRLHVWDLSK  353 (430)
T ss_dssp             EEE-TTSCCEEEEGGG
T ss_pred             EEe-CCCcEEEEeCCC
Confidence            888 999999999987

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.98  E-value=6.9e-30  Score=215.08  Aligned_cols=212  Identities=15%  Similarity=0.308  Sum_probs=170.0

Q ss_pred             eeecCCCCce-eEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           54 RTSSIPNNFL-KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        54 ~~~~~h~~~V-~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ..+.+|.+.| .++.+  ++++|++|+.||+|++||+.+++..                 .....|...|.+++|     
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~-----------------~~~~~h~~~V~~l~~-----  170 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFL-----------------LQLSGHDGGVWALKY-----  170 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEE-----
T ss_pred             EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEE-----------------EEEeCCCcCEEEEEE-----
Confidence            4678998885 66666  5679999999999999999865332                 123357789999988     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEEC--CCCcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN--PTGTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                        ++++ .+++|+.||+|++||+++++....+..+..     .|.+++|+  +++.+++++ .|+.|++||++.......
T Consensus       171 --~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~  242 (464)
T 3v7d_B          171 --AHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNS-----TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD  242 (464)
T ss_dssp             --CSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC--
T ss_pred             --cCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCC-----ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccc
Confidence              5555 899999999999999999998888876654     89999998  577888865 999999999987432211


Q ss_pred             eeee---------------eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEEC
Q 022019          210 KYST---------------LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS  274 (304)
Q Consensus       210 ~~~~---------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  274 (304)
                      ....               ......+|...+.++  +| ++.++++|+.||.|++||+++++++..+.+|...|.+++|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  319 (464)
T 3v7d_B          243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD  319 (464)
T ss_dssp             ----CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred             ccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEc
Confidence            0000               112235677777766  55 56699999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeeccCCeEEEEecccceee
Q 022019          275 RDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       275 ~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      |++++|++++ .||.|++||+++++.+
T Consensus       320 ~~~~~l~sg~-~dg~i~vwd~~~~~~~  345 (464)
T 3v7d_B          320 HERKRCISAS-MDTTIRIWDLENGELM  345 (464)
T ss_dssp             TTTTEEEEEE-TTSCEEEEETTTTEEE
T ss_pred             CCCCEEEEEe-CCCcEEEEECCCCcEE
Confidence            9999999999 9999999999998765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=5.7e-31  Score=233.58  Aligned_cols=214  Identities=18%  Similarity=0.249  Sum_probs=171.4

Q ss_pred             eeeecCCCCceeEEEEcCC--CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           53 FRTSSIPNNFLKGIKWSPD--GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      ...+.+|.+.|++++|+|+  +++|++|+.||.|++||+.++..               ........|...|.+++|   
T Consensus        46 ~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~---------------~~~~~~~~h~~~V~~v~~---  107 (753)
T 3jro_A           46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW---------------SQIAVHAVHSASVNSVQW---  107 (753)
T ss_dssp             EEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE---------------EEEEEECCCSSCEEEEEE---
T ss_pred             ceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc---------------cccccccCCCCCeEEEEE---
Confidence            4477899999999999987  99999999999999999875421               112233456788999988   


Q ss_pred             cceeCCC--ccEEEEEeCCCCEEEEEcCCCeee--EEeecccccccccceEEEEECC-------------CCcEEEEE-c
Q 022019          131 MSASDPT--SCVFASTTRDHPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNP-------------TGTKIFAG-Y  192 (304)
Q Consensus       131 ~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~i~~~~-------------~~~~l~~~-~  192 (304)
                          +|+  +..+++|+.||.|++||++++...  ..+..+     ...|.++.|+|             ++..+++| .
T Consensus       108 ----sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~-----~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~  178 (753)
T 3jro_A          108 ----APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH-----AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA  178 (753)
T ss_dssp             ----CCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC-----SSCEEEEEECCCC---------CGGGCCEEEEET
T ss_pred             ----CCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC-----CCceEEEEecCcccccccccccCCCCCEEEEEEC
Confidence                556  889999999999999999887432  233333     33899999999             47888865 9


Q ss_pred             CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCC--CcEEEEEecCCeEEEEecCCce-----EeEEecccc
Q 022019          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH--TGMLAIGSYSQTSAIYREDNME-----LLYVLHGQE  265 (304)
Q Consensus       193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~  265 (304)
                      ||.|++||++........    .....+|...|.+++|+|++  +.++++|+.||.|++||++++.     .......|.
T Consensus       179 dg~I~iwd~~~~~~~~~~----~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  254 (753)
T 3jro_A          179 DNLVKIWKYNSDAQTYVL----ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP  254 (753)
T ss_dssp             TSCEEEEEEETTTTEEEE----EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCS
T ss_pred             CCeEEEEeccCCccccee----eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCC
Confidence            999999999875433222    22336788999999999943  8899999999999999998864     333445688


Q ss_pred             CCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       266 ~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      ..|++++|+|+|.+|++++ .||.|++|+++++
T Consensus       255 ~~v~~l~~spdg~~l~s~s-~Dg~I~vwd~~~~  286 (753)
T 3jro_A          255 DVLWRASWSLSGNVLALSG-GDNKVTLWKENLE  286 (753)
T ss_dssp             SCCCCEEECTTTCCEEEEC-SSSCEECCBCCSS
T ss_pred             CceEEEEEcCCCCEEEEEc-CCCEEEEEecCCC
Confidence            8999999999999999999 9999999999854

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.3e-30  Score=215.29  Aligned_cols=224  Identities=10%  Similarity=0.102  Sum_probs=161.2

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcc----ccccccccccC---------CccceEEEeecCCeEEE
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY----DVNACSLAKDQ---------DSYEASLVVTEGESVYD  124 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~----~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~  124 (304)
                      .-...|.+++|+|||+++||++.|++|+  |........    .+....+.+..         ..........+...|.+
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~   90 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV   90 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence            4467899999999999999999999999  654443220    00001000000         00001112233567888


Q ss_pred             EeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCC
Q 022019          125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR  203 (304)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~  203 (304)
                      ++|       +|+|.+||+++.||.|++||...  ....+. +...-....+.+++|||+|++|++| .||+|++||+..
T Consensus        91 vaw-------SPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~  160 (588)
T 2j04_A           91 CKP-------SPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK  160 (588)
T ss_dssp             EEE-------CSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred             EEE-------CCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence            877       88999999999999999999543  444444 3321122359999999999999965 999999999986


Q ss_pred             CCc---cceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE---eEEe-ccccCCeEEEEECCC
Q 022019          204 PGR---DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL---LYVL-HGQEGGVTHVQFSRD  276 (304)
Q Consensus       204 ~~~---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~-~~~~~~v~~~~~~~~  276 (304)
                      +..   .+-.+..+.....+|...|.+++|+| ++  +++++.|+.|++||+..+..   ..++ .+|...|.+++|+  
T Consensus       161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--  235 (588)
T 2j04_A          161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--  235 (588)
T ss_dssp             CTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred             CccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence            421   11123444444467889999999999 56  78899999999999987763   3566 4788899999999  


Q ss_pred             CcEEEEeeccCCeEEEEeccccee
Q 022019          277 GNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       277 ~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      |..|++++  +++|++||+.+++.
T Consensus       236 g~~LASa~--~~tIkLWd~~~~~~  257 (588)
T 2j04_A          236 DYKVVLTC--PGYVHKIDLKNYSI  257 (588)
T ss_dssp             TTEEEEEC--SSEEEEEETTTTEE
T ss_pred             CCEEEEEe--CCeEEEEECCCCeE
Confidence            68899887  59999999998876

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.98  E-value=1.3e-30  Score=212.65  Aligned_cols=222  Identities=17%  Similarity=0.233  Sum_probs=164.0

Q ss_pred             eeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      ..+.+|.+.|++++|+|++++|++++.||.|++||+.++..                  .....|...|.+++|.+    
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~------------------~~~~~~~~~v~~~~~~~----  137 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA------------------IQIAQHDAPVKTIHWIK----  137 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE------------------EEEEECSSCEEEEEEEE----
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc------------------eeeccccCceEEEEEEe----
Confidence            36778999999999999999999999999999999985532                  13445778999998844    


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccccc------------------------------------ccccceE
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV------------------------------------DEITAAF  177 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------------------------------~~~~~v~  177 (304)
                       ++++.+|++++.||.|++||+++++....+..+...                                    .....+.
T Consensus       138 -~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  216 (368)
T 3mmy_A          138 -APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHR  216 (368)
T ss_dssp             -CSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEE
T ss_pred             -CCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCc
Confidence             678899999999999999999988776665543210                                    0011233


Q ss_pred             EEEECCCCc----EEEE-EcCCeEEEEEcCCCCccceeeeeeec--------cccccccceeEEEeecCCCcEEEEEecC
Q 022019          178 SVAFNPTGT----KIFA-GYNKSVRVFDVHRPGRDFEKYSTLKG--------NKEGQAGIMSAIAFSPTHTGMLAIGSYS  244 (304)
Q Consensus       178 ~i~~~~~~~----~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~p~~~~~l~~~~~d  244 (304)
                      ++.+.++..    .+++ +.|+.|++||++..... .....+..        ...+|...|.+++|+| ++.+|++|+.|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~d  294 (368)
T 3mmy_A          217 CVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSD  294 (368)
T ss_dssp             EEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETT
T ss_pred             eEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc-ccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccC
Confidence            444443332    2564 59999999999864220 11111111        0112223799999999 77799999999


Q ss_pred             CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEE---ecccceee
Q 022019          245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW---DLRKAVQV  301 (304)
Q Consensus       245 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vw---d~~~~~~~  301 (304)
                      |.|++||+++++++..+.+|...|++++|+|+|++|++++ .|+..+.|   +......+
T Consensus       295 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s-~d~~~~~~~~~~~~~~~~i  353 (368)
T 3mmy_A          295 GRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYAS-SYDWSKGHEFYNPQKKNYI  353 (368)
T ss_dssp             SCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEE-CCCSTTCGGGCCTTSCCEE
T ss_pred             CeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEe-cccccccccccCCCcccee
Confidence            9999999999999999999999999999999999999999 77754444   44444443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=1.6e-30  Score=210.27  Aligned_cols=206  Identities=16%  Similarity=0.196  Sum_probs=166.5

Q ss_pred             eecCCCCceeEEEEcCCCC-eEEEecCCCeEEEeeC-CCCCCccccccccccccCCccceEEEee--cCCeEEEEeecCc
Q 022019           55 TSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSL-PENGISYDVNACSLAKDQDSYEASLVVT--EGESVYDFCWFPH  130 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~-~l~s~~~dg~v~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~  130 (304)
                      ...+|...|++++|+|+++ +|++|+.||.|++||+ .++..                  .....  |...|.+++|   
T Consensus        51 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~------------------~~~~~~~~~~~v~~l~~---  109 (342)
T 1yfq_A           51 QSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF------------------QALTNNEANLGICRICK---  109 (342)
T ss_dssp             EEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE------------------EECBSCCCCSCEEEEEE---
T ss_pred             eeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce------------------EeccccCCCCceEEEEe---
Confidence            4458999999999999999 9999999999999999 75432                  12233  6688999988   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCC---------CeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEc
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATT---------GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDV  201 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~  201 (304)
                          +| +.+|++++.|+.|++||+++         ++....+.      +...|.+++|+|++ +++++.|+.|++||+
T Consensus       110 ----~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~  177 (342)
T 1yfq_A          110 ----YG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK------VKNKIFTMDTNSSR-LIVGMNNSQVQWFRL  177 (342)
T ss_dssp             ----ET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS------SCCCEEEEEECSSE-EEEEESTTEEEEEES
T ss_pred             ----CC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe------eCCceEEEEecCCc-EEEEeCCCeEEEEEC
Confidence                66 77999999999999999986         55444433      23389999999987 333559999999999


Q ss_pred             CC-CCccceeeeeeeccccccccceeEEEeec-CCCcEEEEEecCCeEEEEecCCc------eEeEEeccccC-------
Q 022019          202 HR-PGRDFEKYSTLKGNKEGQAGIMSAIAFSP-THTGMLAIGSYSQTSAIYREDNM------ELLYVLHGQEG-------  266 (304)
Q Consensus       202 ~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~-------  266 (304)
                      +. .......      ....+...+.+++|+| + +.++++++.||.|++|+++..      ++...+..|..       
T Consensus       178 ~~~~~~~~~~------~~~~~~~~i~~i~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (342)
T 1yfq_A          178 PLCEDDNGTI------EESGLKYQIRDVALLPKE-QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL  250 (342)
T ss_dssp             SCCTTCCCEE------EECSCSSCEEEEEECSGG-GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS
T ss_pred             Ccccccccee------eecCCCCceeEEEECCCC-CCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccccc
Confidence            86 4322211      1145667799999999 5 458999999999999999876      77788888765       


Q ss_pred             --CeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          267 --GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       267 --~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                        .|.+++|+|++++|++++ .||.|++||+.+++.+
T Consensus       251 ~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~  286 (342)
T 1yfq_A          251 AYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKI  286 (342)
T ss_dssp             CCCEEEEEECTTTCCEEEEE-TTSCEEEEETTTTEEE
T ss_pred             ceeEEEEEEcCCCCEEEEec-CCceEEEEcCccHhHh
Confidence              999999999999999999 9999999999988765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=1.5e-29  Score=220.01  Aligned_cols=232  Identities=13%  Similarity=0.157  Sum_probs=180.0

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCc-eeEEEEcC--CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccc
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNF-LKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE  111 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~i~~s~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  111 (304)
                      .+..|++......  ......+.+|.+. |++++|+|  ++++|++|+.||.|++||+.++......         ....
T Consensus        40 ~v~v~~~~~~~~~--~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---------~~~~  108 (615)
T 1pgu_A           40 SAFVRCLDDGDSK--VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV---------EVNV  108 (615)
T ss_dssp             EEEEEECCSSCCS--SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE---------EEEE
T ss_pred             eEEEEECCCCCCc--cccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccc---------cccc
Confidence            4566776644110  0233478899999 99999999  9999999999999999999643110000         0011


Q ss_pred             eEEEeecCCeEEEEeecCccceeCCCccEEEEEeCC----CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCc-
Q 022019          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-  186 (304)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-  186 (304)
                      ......+...|.+++|       +|++++|++++.+    +.|++||  .++....+..+..     .|.+++|+|+++ 
T Consensus       109 ~~~~~~~~~~v~~~~~-------s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~-----~v~~~~~~~~~~~  174 (615)
T 1pgu_A          109 KSEFQVLAGPISDISW-------DFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQ-----RINACHLKQSRPM  174 (615)
T ss_dssp             EEEEECCSSCEEEEEE-------CTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSS-----CEEEEEECSSSSC
T ss_pred             cchhhcccccEEEEEE-------eCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCc-----cEEEEEECCCCCc
Confidence            1123346678888888       7799999999987    6788887  5666666665544     899999999997 


Q ss_pred             EEEEE-cCCeEEEEEcCCCCccceeeeeeecccccccc---ceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEe-
Q 022019          187 KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG---IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-  261 (304)
Q Consensus       187 ~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-  261 (304)
                      .++++ .|+.|++||++..        .......+|..   .|.+++|+|+++.+|++++.||.|++||+++++++..+ 
T Consensus       175 ~l~~~~~d~~v~vwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  246 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGPPF--------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE  246 (615)
T ss_dssp             EEEEEETTTEEEEEETTTB--------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC
T ss_pred             EEEEEeCCCcEEEEeCCCc--------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEec
Confidence            66654 9999999998762        12222356777   89999999942889999999999999999999999999 


Q ss_pred             c---cccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          262 H---GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       262 ~---~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      .   .|...|.+++|+ ++.+|++++ .|+.|++||+++++.+
T Consensus       247 ~~~~~~~~~v~~~~~~-~~~~l~~~~-~d~~i~~wd~~~~~~~  287 (615)
T 1pgu_A          247 DDQEPVQGGIFALSWL-DSQKFATVG-ADATIRVWDVTTSKCV  287 (615)
T ss_dssp             BTTBCCCSCEEEEEES-SSSEEEEEE-TTSEEEEEETTTTEEE
T ss_pred             ccccccCCceEEEEEc-CCCEEEEEc-CCCcEEEEECCCCcEE
Confidence            6   899999999999 999999999 9999999999988654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=1.1e-29  Score=237.30  Aligned_cols=208  Identities=16%  Similarity=0.260  Sum_probs=174.6

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+.+|.+.|++++|+|+|++|++|+.||+|++||+.++....                 ....|...|.+++|       
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~-----------------~~~~h~~~v~~~~~-------  665 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL-----------------DIKAHEDEVLCCAF-------  665 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-----------------EECCCSSCEEEEEE-------
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE-----------------EeccCCCCEEEEEE-------
Confidence            678999999999999999999999999999999998654321                 23356688999988       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC--CcEEEEE-cCCeEEEEEcCCCCccceee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                      +|+++++++++.||.|++||+.+++....+..+..     .|.+++|+|+  +.++++| .|+.|++||++++.      
T Consensus       666 s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~------  734 (1249)
T 3sfz_A          666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSE-----QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE------  734 (1249)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS------
T ss_pred             ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC-----cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc------
Confidence            77999999999999999999999999888887665     8999999994  4567755 99999999998742      


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-----------------------------
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-----------------------------  262 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------------------  262 (304)
                        ......+|...|.+++|+| ++.++++|+.||.|++||+++++....+.                             
T Consensus       735 --~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~  811 (1249)
T 3sfz_A          735 --CRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD  811 (1249)
T ss_dssp             --EEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS
T ss_pred             --hhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCC
Confidence              1122257888999999999 77899999999999999998765443321                             


Q ss_pred             --------------------------cccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          263 --------------------------GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       263 --------------------------~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                                                +|...|.+++|+|++.++++++ .||.|++||+.++..+
T Consensus       812 ~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vwd~~~~~~~  875 (1249)
T 3sfz_A          812 KIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL-SQYCVELWNIDSRLKV  875 (1249)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC-SSSCEEEEETTTTEEE
T ss_pred             EEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCcee
Confidence                                      5677899999999999999999 9999999999987654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=2.5e-29  Score=234.87  Aligned_cols=227  Identities=19%  Similarity=0.244  Sum_probs=184.6

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      +..|+......      +..+.+|.+.|++++|+|+|++|++|+.||.|++||+.++...                 ...
T Consensus       639 i~vw~~~~~~~------~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~-----------------~~~  695 (1249)
T 3sfz_A          639 LQVFKAETGEK------LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV-----------------HTY  695 (1249)
T ss_dssp             EEEEETTTCCE------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-----------------EEE
T ss_pred             EEEEECCCCCE------EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceE-----------------EEE
Confidence            44555554433      3467899999999999999999999999999999999865432                 133


Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCC
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK  194 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~  194 (304)
                      ..|...|.+++|.|     ..++.++++|+.||.|++||+.+++....+..+..     .|.+++|+|++++++++ .||
T Consensus       696 ~~~~~~v~~~~~~~-----~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~-----~v~~~~~sp~~~~l~s~s~dg  765 (1249)
T 3sfz_A          696 DEHSEQVNCCHFTN-----KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN-----SVNHCRFSPDDELLASCSADG  765 (1249)
T ss_dssp             ECCSSCEEEEEECS-----SSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS-----CEEEEEECSSTTEEEEEESSS
T ss_pred             cCCCCcEEEEEEec-----CCCceEEEEEeCCCeEEEEECCCcchhheecCCCC-----CEEEEEEecCCCEEEEEECCC
Confidence            45678899998854     22566899999999999999999998888876654     89999999999999965 999


Q ss_pred             eEEEEEcCCCCccceeee------------------------------------------------eeecccccccccee
Q 022019          195 SVRVFDVHRPGRDFEKYS------------------------------------------------TLKGNKEGQAGIMS  226 (304)
Q Consensus       195 ~i~v~d~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~v~  226 (304)
                      .|++||++..... ..+.                                                .......+|...+.
T Consensus       766 ~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~  844 (1249)
T 3sfz_A          766 TLRLWDVRSANER-KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ  844 (1249)
T ss_dssp             EEEEEEGGGTEEE-EEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred             eEEEEeCCCCccc-ceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence            9999999763211 0000                                                00001126778899


Q ss_pred             EEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       227 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      +++|+| ++.++++++.||.|++||+.++..+..+.+|...|++++|+|+|.+|++++ .||.|++|++.++
T Consensus       845 ~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s-~dg~v~vw~~~~~  914 (1249)
T 3sfz_A          845 YCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKV  914 (1249)
T ss_dssp             EEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEHHHH
T ss_pred             EEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEe-CCCeEEEEEcccc
Confidence            999999 788999999999999999999999999999999999999999999999999 9999999998753

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.1e-30  Score=207.54  Aligned_cols=209  Identities=8%  Similarity=0.005  Sum_probs=153.7

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC--C
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP--T  137 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~  137 (304)
                      ...|.++.|+|+   +++++.|++|++|+...........       ...........+...|.+++|       +|  +
T Consensus        76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~-------~~~~~  138 (343)
T 3lrv_A           76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSK-------TNKVLREIEVDSANEIIYMYG-------HNEVN  138 (343)
T ss_dssp             EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETT-------TCCEEEEEECCCSSCEEEEEC-------CC---
T ss_pred             cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecC-------CcceeEEeecCCCCCEEEEEc-------CCCCC
Confidence            456788888887   8999999999999876432111111       111122233445577888887       67  8


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeec
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~  216 (304)
                      ++++++++.||.|++||+++++.......+.    ...+.+++|+|++.++++| .|+.|++||++........      
T Consensus       139 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~----~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~------  208 (343)
T 3lrv_A          139 TEYFIWADNRGTIGFQSYEDDSQYIVHSAKS----DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR------  208 (343)
T ss_dssp             CCEEEEEETTCCEEEEESSSSCEEEEECCCS----SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEE------
T ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEEecCC----CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccE------
Confidence            8999999999999999999988755543322    2268999999999999976 9999999999875322111      


Q ss_pred             cccc-cccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc---ccCCeE--EEEECCCCcEEEEeecc-CCe
Q 022019          217 NKEG-QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG---QEGGVT--HVQFSRDGNYLYTGGRK-DPY  289 (304)
Q Consensus       217 ~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~l~~~~~~-d~~  289 (304)
                       ... |..+|++++|+| ++.+|++++ ++.|++||+++.+.+..+..   |...+.  +++|+|+|++|++++ . |+.
T Consensus       209 -~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s-~~d~~  284 (343)
T 3lrv_A          209 -FPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYS-NESNS  284 (343)
T ss_dssp             -CCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEE-TTTTE
T ss_pred             -EeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEec-CCCCc
Confidence             133 888999999999 788999999 55999999998876655543   334444  699999999999988 6 999


Q ss_pred             EEEEecccce
Q 022019          290 ILCWDLRKAV  299 (304)
Q Consensus       290 i~vwd~~~~~  299 (304)
                      |++|++.++.
T Consensus       285 i~v~~~~~~~  294 (343)
T 3lrv_A          285 LTIYKFDKKT  294 (343)
T ss_dssp             EEEEEECTTT
T ss_pred             EEEEEEcccc
Confidence            9999996653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=4.7e-30  Score=212.24  Aligned_cols=229  Identities=11%  Similarity=0.188  Sum_probs=172.6

Q ss_pred             ceeeecCCCccccc-ccceeeeecCCCCceeEEEEcCCC-CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccce
Q 022019           35 PLIRFDVPPHRTYH-FYNQFRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (304)
Q Consensus        35 ~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~i~~s~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (304)
                      .+..|++....... .......+.+|...|++++|+|++ .+|++++.||.|++||+.+++...                
T Consensus       105 ~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~----------------  168 (402)
T 2aq5_A          105 TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL----------------  168 (402)
T ss_dssp             EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE----------------
T ss_pred             eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE----------------
Confidence            35566665543211 113345788999999999999998 699999999999999998653321                


Q ss_pred             EEE--eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEe-ecccccccccceEEEEECCCCcEEE
Q 022019          113 SLV--VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTY-RAYDAVDEITAAFSVAFNPTGTKIF  189 (304)
Q Consensus       113 ~~~--~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~  189 (304)
                       ..  ..|...|.+++|       +|++.+|++++.||.|++||+++++....+ ..+..    ..+.++.|+|++.+++
T Consensus       169 -~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~  236 (402)
T 2aq5_A          169 -TLGPDVHPDTIYSVDW-------SRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG----TRPVHAVFVSEGKILT  236 (402)
T ss_dssp             -EECTTTCCSCEEEEEE-------CTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS----SSCCEEEECSTTEEEE
T ss_pred             -EEecCCCCCceEEEEE-------CCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC----CcceEEEEcCCCcEEE
Confidence             11  235678999988       778999999999999999999999888777 44432    1478999999999999


Q ss_pred             EE----cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE-eEEecc-
Q 022019          190 AG----YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLHG-  263 (304)
Q Consensus       190 ~~----~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~-  263 (304)
                      +|    .|+.|++||++.........      ...+...+.+++|+|++..++++|+.||.|++||+.++++ +..+.. 
T Consensus       237 ~g~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~  310 (402)
T 2aq5_A          237 TGFSRMSERQVALWDTKHLEEPLSLQ------ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF  310 (402)
T ss_dssp             EEECTTCCEEEEEEETTBCSSCSEEE------ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred             EeccCCCCceEEEEcCccccCCceEE------eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence            76    79999999998753322211      1235567999999995444445666899999999998774 444443 


Q ss_pred             -ccCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          264 -QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       264 -~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                       |...|.+++|+|++.++++   .++.+++|++.+++.
T Consensus       311 ~~~~~v~~~~~sp~~~~~~s---~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          311 SSKESQRGMGYMPKRGLEVN---KCEIARFYKLHERKC  345 (402)
T ss_dssp             CCSSCCSEEEECCGGGSCGG---GTEEEEEEEEETTEE
T ss_pred             ccCCcccceEEeccccccee---cceeEEEEEcCCCcE
Confidence             4589999999999998764   466999999988643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.1e-29  Score=210.27  Aligned_cols=204  Identities=9%  Similarity=0.022  Sum_probs=162.7

Q ss_pred             ecCCCCceeEEEEcCCCCeE-EEecCCCeEEEeeCC--CCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           56 SSIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLP--ENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~~~l-~s~~~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ..+|.+.|++++|+|++++| ++|+.||.|++||+.  ++.....+               ....+...+.+++|     
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~---------------~~~~~~~~v~~~~~-----  157 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR---------------KRFCFSKRPNAISI-----  157 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE---------------EEEECSSCEEEEEE-----
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee---------------ecccCCCCceEEEE-----
Confidence            45788899999999999996 899999999999997  44321111               11244577888887     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeE----EeecccccccccceEEEEECCC---CcEEEEE-cCCeEEEEEcCCC
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRC----TYRAYDAVDEITAAFSVAFNPT---GTKIFAG-YNKSVRVFDVHRP  204 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~-~d~~i~v~d~~~~  204 (304)
                        +|++++|++++.+|.|++|++.++....    .+..+     ...|.+++|+|+   +++|+++ .|+.|++||++..
T Consensus       158 --sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~  230 (450)
T 2vdu_B          158 --AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH-----VSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC  230 (450)
T ss_dssp             --CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC-----SSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred             --cCCCCEEEEEeCCCcEEEEecCCcccccccceeeecc-----cCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence              7799999999999999999998776543    33333     348999999999   8888865 9999999999864


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccc--------------------
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ--------------------  264 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------------  264 (304)
                      .. .   ..   ...+|...|.+++|+  ++.+|++|+.|+.|++||+++++++..+..+                    
T Consensus       231 ~~-~---~~---~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (450)
T 2vdu_B          231 FI-V---DK---WLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNE  301 (450)
T ss_dssp             TC-E---EE---ECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-------
T ss_pred             ce-e---ee---eecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccc
Confidence            21 1   11   125788899999999  5679999999999999999999988887632                    


Q ss_pred             -----cCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          265 -----EGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       265 -----~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                           ...|.+++|+|++++|++++..|+.|++|++
T Consensus       302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence                 3469999999999999988767999999999

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7e-29  Score=198.04  Aligned_cols=205  Identities=16%  Similarity=0.181  Sum_probs=165.2

Q ss_pred             ceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      +..+.+.+|.+.|++++| |++++|++|+.||.|++||+.++..                 ......+...+.+++|   
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~-----------------~~~~~~~~~~v~~~~~---   67 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL-----------------GTVVYTGQGFLNSVCY---   67 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE-----------------EEEEEECSSCEEEEEE---
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE-----------------EEEeecCCccEEEEEE---
Confidence            445688999999999999 9999999999999999999864422                 2244456788999988   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCC---eeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCc
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTG---LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGR  206 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~  206 (304)
                          +|++++|++++.||.|++|++...   +....+..+.     ..|.++.|  ++.+++++ .|+.|++||..    
T Consensus        68 ----~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~--~~~~l~~~~~d~~i~~~d~~----  132 (313)
T 3odt_A           68 ----DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQ-----GNVCSLSF--QDGVVISGSWDKTAKVWKEG----  132 (313)
T ss_dssp             ----ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCS-----SCEEEEEE--ETTEEEEEETTSEEEEEETT----
T ss_pred             ----CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcc-----cCEEEEEe--cCCEEEEEeCCCCEEEEcCC----
Confidence                678999999999999999998764   3344454444     38999999  46677754 99999999921    


Q ss_pred             cceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc-ccCCeEEEEECCCCcEEEEeec
Q 022019          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQFSRDGNYLYTGGR  285 (304)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~  285 (304)
                        ....    ....|...+.+++|+|.++.++++++.||.|++||  ..+....+.. |...+.+++|+|++. +++++ 
T Consensus       133 --~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~-  202 (313)
T 3odt_A          133 --SLVY----NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS-  202 (313)
T ss_dssp             --EEEE----EEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEE-
T ss_pred             --cEEE----ecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEcc-
Confidence              1112    22567788999999986777999999999999999  4566677776 889999999999998 88888 


Q ss_pred             cCCeEEEEecccceee
Q 022019          286 KDPYILCWDLRKAVQV  301 (304)
Q Consensus       286 ~d~~i~vwd~~~~~~~  301 (304)
                      .||.|++||+++++.+
T Consensus       203 ~dg~i~i~d~~~~~~~  218 (313)
T 3odt_A          203 NDGLIKLVDMHTGDVL  218 (313)
T ss_dssp             TTSEEEEEETTTCCEE
T ss_pred             CCCeEEEEECCchhhh
Confidence            9999999999988665

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=1.8e-29  Score=219.57  Aligned_cols=208  Identities=15%  Similarity=0.216  Sum_probs=170.2

Q ss_pred             cCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCe-EEEEeecCccceeC
Q 022019           57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGES-VYDFCWFPHMSASD  135 (304)
Q Consensus        57 ~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~  135 (304)
                      ..|.+.|++++|+|+|++|++++ ++.|++||+.++...             .........|... |.+++|       +
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~-------------~~~~~~~~~h~~~~v~~~~~-------s   73 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSK-------------VPPVVQFTGHGSSVVTTVKF-------S   73 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCS-------------SCSEEEECTTTTSCEEEEEE-------C
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCc-------------cccceEEecCCCceEEEEEE-------C
Confidence            46889999999999999999998 889999999854100             0112234456678 999988       7


Q ss_pred             C--CccEEEEEeCCCCEEEEEcCCC--------eeeEEeecccccccccceEEEEECCCCcEEEEE-cC----CeEEEEE
Q 022019          136 P--TSCVFASTTRDHPIHLWDATTG--------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN----KSVRVFD  200 (304)
Q Consensus       136 ~--~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d----~~i~v~d  200 (304)
                      |  ++++|++++.||.|++||+.++        .....+..+..     .|.+++|+|++++++++ .+    +.|++||
T Consensus        74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d  148 (615)
T 1pgu_A           74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG-----PISDISWDFEGRRLCVVGEGRDNFGVFISWD  148 (615)
T ss_dssp             SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEEECCSSCSEEEEETT
T ss_pred             cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc-----cEEEEEEeCCCCEEEEeccCCCCccEEEEEE
Confidence            8  8999999999999999999754        44445554443     89999999999999965 55    6888888


Q ss_pred             cCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC---CeEEEEECCC-
Q 022019          201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG---GVTHVQFSRD-  276 (304)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v~~~~~~~~-  276 (304)
                      ...          ......+|...|.+++|+|++..++++++.|+.|++||+.+++++..+.+|..   .|++++|+|+ 
T Consensus       149 ~~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  218 (615)
T 1pgu_A          149 SGN----------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS  218 (615)
T ss_dssp             TCC----------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT
T ss_pred             CCC----------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCC
Confidence            421          11223678889999999995555899999999999999999999999999999   9999999999 


Q ss_pred             CcEEEEeeccCCeEEEEecccceee
Q 022019          277 GNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       277 ~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +++|++++ .||.|++||+++++.+
T Consensus       219 ~~~l~~~~-~dg~i~vwd~~~~~~~  242 (615)
T 1pgu_A          219 GEFVITVG-SDRKISCFDGKSGEFL  242 (615)
T ss_dssp             CCEEEEEE-TTCCEEEEETTTCCEE
T ss_pred             CCEEEEEe-CCCeEEEEECCCCCEe
Confidence            99999999 9999999999988765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.6e-29  Score=210.76  Aligned_cols=223  Identities=11%  Similarity=0.113  Sum_probs=166.2

Q ss_pred             CceeEEEEcCCCCeEEEecCCCeEEEeeCCCCC---Cccccccccc---------cc--------cCC---c--------
Q 022019           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG---ISYDVNACSL---------AK--------DQD---S--------  109 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~---~~~~~~~~~~---------~~--------~~~---~--------  109 (304)
                      .++.+++|+|+|++|+++ .++.|++||+.+++   ..........         ..        ...   .        
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            468999999999976665 57899999998877   3221111000         00        000   0        


Q ss_pred             ---------cceEEEeecCCeEEEEeecCccceeCCCccEE-EEEeCCCCEEEEEcC--CCeeeEEeecccccccccceE
Q 022019          110 ---------YEASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIHLWDAT--TGLLRCTYRAYDAVDEITAAF  177 (304)
Q Consensus       110 ---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~v~  177 (304)
                               ........+...|.+++|       +|++++| ++++.||.|++||+.  +++....+..+.   +...|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~v~  153 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRL-------TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC---FSKRPN  153 (450)
T ss_dssp             ----------------CCCCCEEEEEE-------CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE---CSSCEE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEE-------cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc---CCCCce
Confidence                     000000123346777777       7789886 889999999999999  787777765322   223899


Q ss_pred             EEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCC---CcEEEEEecCCeEEEEecC
Q 022019          178 SVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH---TGMLAIGSYSQTSAIYRED  253 (304)
Q Consensus       178 ~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~i~i~d~~  253 (304)
                      +++|+|++++|+++ .++.|++|++........    ......+|...|.+++|+| +   +.+|++|+.|+.|++||++
T Consensus       154 ~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~  228 (450)
T 2vdu_B          154 AISIAEDDTTVIIADKFGDVYSIDINSIPEEKF----TQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYP  228 (450)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTSCCCSSC----CCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEES
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCcccccc----cceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECC
Confidence            99999999999966 899999999976432110    1113356788899999999 6   7899999999999999999


Q ss_pred             CceEeEE-eccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          254 NMELLYV-LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       254 ~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +++++.. +.+|...|.+++|+ ++.+|++++ .|+.|++||+++++.+
T Consensus       229 ~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~~~  275 (450)
T 2vdu_B          229 QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGKNL  275 (450)
T ss_dssp             CTTCEEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCCEE
T ss_pred             CCceeeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCcEe
Confidence            9888877 56899999999999 999999999 9999999999998754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=4.8e-29  Score=208.27  Aligned_cols=209  Identities=18%  Similarity=0.294  Sum_probs=167.4

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      +..|+......      ...+.+|.+.|.+++|  ++++|++|+.||+|++||+.+++...                 ..
T Consensus       155 i~iwd~~~~~~------~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~-----------------~~  209 (435)
T 1p22_A          155 IKIWDKNTLEC------KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN-----------------TL  209 (435)
T ss_dssp             EEEEESSSCCE------EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE-----------------EE
T ss_pred             EEEEeCCCCeE------EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE-----------------EE
Confidence            44555544433      3467899999999999  78899999999999999998654321                 23


Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeee---EEeecccccccccceEEEEECCCCcEEEEE-
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR---CTYRAYDAVDEITAAFSVAFNPTGTKIFAG-  191 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-  191 (304)
                      ..|...|.++.|         ++..+++|+.||.|++||+.++...   ..+..+.     ..|.+++|  ++++++++ 
T Consensus       210 ~~h~~~v~~l~~---------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~v~~~~~--~~~~l~s~~  273 (435)
T 1p22_A          210 IHHCEAVLHLRF---------NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR-----AAVNVVDF--DDKYIVSAS  273 (435)
T ss_dssp             CCCCSCEEEEEC---------CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS-----SCEEEEEE--ETTEEEEEE
T ss_pred             cCCCCcEEEEEE---------cCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC-----CcEEEEEe--CCCEEEEEe
Confidence            346678888888         3458999999999999999987655   3333333     38999999  67788855 


Q ss_pred             cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEE
Q 022019          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV  271 (304)
Q Consensus       192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~  271 (304)
                      .|+.|++||+++..    ...    ...+|...+.++.|++   .++++|+.||.|++||+++++++..+.+|...|.++
T Consensus       274 ~dg~i~vwd~~~~~----~~~----~~~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~  342 (435)
T 1p22_A          274 GDRTIKVWNTSTCE----FVR----TLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI  342 (435)
T ss_dssp             TTSEEEEEETTTCC----EEE----EEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCCeEEEEECCcCc----EEE----EEcCCCCcEEEEEeCC---CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEE
Confidence            99999999998742    112    2256778899999854   489999999999999999999999999999999999


Q ss_pred             EECCCCcEEEEeeccCCeEEEEecccce
Q 022019          272 QFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       272 ~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      +|  ++.+|++|+ .||.|++||+++++
T Consensus       343 ~~--~~~~l~sg~-~dg~i~vwd~~~~~  367 (435)
T 1p22_A          343 RF--DNKRIVSGA-YDGKIKVWDLVAAL  367 (435)
T ss_dssp             EC--CSSEEEEEE-TTSCEEEEEHHHHT
T ss_pred             Ee--cCCEEEEEe-CCCcEEEEECCCCC
Confidence            99  788999999 99999999998765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=5e-29  Score=201.47  Aligned_cols=214  Identities=11%  Similarity=0.071  Sum_probs=164.5

Q ss_pred             eeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      ....+|.+.|++++|+|++++|++++.||.|++|++.++..              .........+...|.+++|      
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~--------------~~~~~~~~~~~~~v~~~~~------   64 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK--------------NVDLLQSLRYKHPLLCCNF------   64 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT--------------EEEEEEEEECSSCEEEEEE------
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc--------------cccceeeeecCCceEEEEE------
Confidence            34568999999999999999999999999999999875431              0112234467789999988      


Q ss_pred             eCCCcc-EEEEEeCCCCEEEEEc-CCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccc-e
Q 022019          134 SDPTSC-VFASTTRDHPIHLWDA-TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDF-E  209 (304)
Q Consensus       134 ~~~~~~-~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~-~  209 (304)
                       +|+++ +|++++.||.|++||+ .+++. ..+...   .+...|.+++|+| +..++++ .|+.|++||++...... .
T Consensus        65 -~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~---~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~  138 (342)
T 1yfq_A           65 -IDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNN---EANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA  138 (342)
T ss_dssp             -EESSSEEEEEEETTSCEEEECSSSSSSE-EECBSC---CCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred             -CCCCCcEEEEEcCCCeEEEEEeccCCce-Eecccc---CCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc
Confidence             66899 9999999999999999 87755 344430   1333899999999 8888855 99999999987411000 0


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC-ce--EeEEeccccCCeEEEEECC-CCcEEEEeec
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-ME--LLYVLHGQEGGVTHVQFSR-DGNYLYTGGR  285 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  285 (304)
                      ........ ..+...+.+++|+| ++  +++++.|+.|++||++. +.  .......|...+.+++|+| ++.+|++++ 
T Consensus       139 ~~~~~~~~-~~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-  213 (342)
T 1yfq_A          139 VKNLNSNN-TKVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-  213 (342)
T ss_dssp             EEESCSSS-SSSCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-
T ss_pred             ccCCeeeE-EeeCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe-
Confidence            00011111 22677899999999 44  89999999999999987 44  3334456888999999999 999999999 


Q ss_pred             cCCeEEEEecccc
Q 022019          286 KDPYILCWDLRKA  298 (304)
Q Consensus       286 ~d~~i~vwd~~~~  298 (304)
                      .||.|++|+++..
T Consensus       214 ~dg~i~i~~~~~~  226 (342)
T 1yfq_A          214 IDGRVAVEFFDDQ  226 (342)
T ss_dssp             TTSEEEEEECCTT
T ss_pred             cCCcEEEEEEcCC
Confidence            9999999999776

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.6e-29  Score=208.17  Aligned_cols=200  Identities=12%  Similarity=0.112  Sum_probs=155.8

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecC-----CeEEEEeecCccc
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG-----ESVYDFCWFPHMS  132 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~  132 (304)
                      +|...|.+++|||+|.+||+++.||.|++||...  ..                  ....|.     ..+.+++|     
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l------------------~~l~~~~~~~~~sv~svaf-----  137 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--ML------------------TNLDSKGNLSSRTYHCFEW-----  137 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EE------------------EECCCSSCSTTTCEEEEEE-----
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--ee------------------eeccCCCccccccEEEEEE-----
Confidence            5688999999999999999999999999999542  00                  111122     24888877     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCee-------eEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCC
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLL-------RCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPG  205 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~  205 (304)
                        ||+|++|++|+.||+|++||+.++..       ..++..+.. +|...|.+++|+|+| +++++.|++|++||+....
T Consensus       138 --SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~-gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          138 --NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDA-GSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             --CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCT-TCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSS
T ss_pred             --cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccc-cccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCc
Confidence              88999999999999999999998753       455543332 355699999999999 5556799999999997642


Q ss_pred             ccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEE--CCCCcEEEEe
Q 022019          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF--SRDGNYLYTG  283 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~  283 (304)
                      .. .....+.   .+|...|.+++|+  + ..|++++ ++.|++||+.+++......+|...|.+++|  +|++..|+++
T Consensus       214 ~~-~~~~tL~---~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a  285 (588)
T 2j04_A          214 HQ-PVSRMIQ---NASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMS  285 (588)
T ss_dssp             SC-CCEEEEE---CCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEEC
T ss_pred             cc-cceeeec---ccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEE
Confidence            10 0011111   3567789999999  3 5888887 699999999988874444489999999999  9999999999


Q ss_pred             eccCCeEEEEecc
Q 022019          284 GRKDPYILCWDLR  296 (304)
Q Consensus       284 ~~~d~~i~vwd~~  296 (304)
                      + .||+ ++|...
T Consensus       286 ~-edG~-klw~~d  296 (588)
T 2j04_A          286 N-KTSY-KVLLED  296 (588)
T ss_dssp             S-SCEE-EEEESS
T ss_pred             c-CCCC-EEEeec
Confidence            9 9999 999975

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.3e-28  Score=205.74  Aligned_cols=213  Identities=16%  Similarity=0.274  Sum_probs=166.4

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      +..|+.....      ....+.+|.+.|.+++|+  +.+|++|+.||.|++||+.++...              ......
T Consensus       195 i~vwd~~~~~------~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~--------------~~~~~~  252 (435)
T 1p22_A          195 VRVWDVNTGE------MLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDI--------------TLRRVL  252 (435)
T ss_dssp             EEEEESSSCC------EEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCC--------------EEEEEE
T ss_pred             EEEEECCCCc------EEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCc--------------eeeeEe
Confidence            3445554443      234677899999999997  459999999999999999865321              111244


Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCC
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK  194 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~  194 (304)
                      ..|...|.++.|         +++++++|+.||.|++||+++++....+..+..     .|.++.|+  +.++++| .|+
T Consensus       253 ~~~~~~v~~~~~---------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~~g~~dg  316 (435)
T 1p22_A          253 VGHRAAVNVVDF---------DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-----GIACLQYR--DRLVVSGSSDN  316 (435)
T ss_dssp             CCCSSCEEEEEE---------ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEEE--TTEEEEEETTS
T ss_pred             cCCCCcEEEEEe---------CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC-----cEEEEEeC--CCEEEEEeCCC
Confidence            556778888877         677999999999999999999998888876654     88999984  5677755 999


Q ss_pred             eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce---------EeEEecccc
Q 022019          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---------LLYVLHGQE  265 (304)
Q Consensus       195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~  265 (304)
                      .|++||++++.    ...    ...+|...|.+++|+   +.+|++|+.||.|++||++++.         ++..+.+|.
T Consensus       317 ~i~iwd~~~~~----~~~----~~~~h~~~v~~~~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~  385 (435)
T 1p22_A          317 TIRLWDIECGA----CLR----VLEGHEELVRCIRFD---NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS  385 (435)
T ss_dssp             CEEEEETTTCC----EEE----EECCCSSCEEEEECC---SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS
T ss_pred             eEEEEECCCCC----EEE----EEeCCcCcEEEEEec---CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC
Confidence            99999998731    112    225688889999993   4589999999999999998766         788899999


Q ss_pred             CCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       266 ~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      +.|++++|  ++.+|++++ .||.|++||+.+...
T Consensus       386 ~~v~~l~~--~~~~l~s~s-~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          386 GRVFRLQF--DEFQIVSSS-HDDTILIWDFLNDPA  417 (435)
T ss_dssp             SCCCCEEE--CSSCEEECC-SSSEEEEEC------
T ss_pred             CCeEEEEe--CCCEEEEEe-CCCEEEEEECCCCCC
Confidence            99999999  788899999 999999999987654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=6.8e-28  Score=201.90  Aligned_cols=212  Identities=17%  Similarity=0.264  Sum_probs=171.8

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..|+......      ...+.+|.+.|++++|+  +++|++|+.||+|++||+.+++...                 .
T Consensus       140 ~i~vwd~~~~~~------~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~-----------------~  194 (445)
T 2ovr_B          140 TLKVWSAVTGKC------LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIH-----------------T  194 (445)
T ss_dssp             CEEEEETTTCCE------EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEE-----------------E
T ss_pred             cEEEEECCCCcE------EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEE-----------------E
Confidence            345566655433      34678999999999997  6699999999999999998653321                 2


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  193 (304)
                      ...|...|.++.|         ++..+++|+.||.|++||+.+++....+..+..     .|.++.|  ++.+++++ .|
T Consensus       195 ~~~h~~~v~~~~~---------~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~--~~~~l~~~~~d  258 (445)
T 2ovr_B          195 LYGHTSTVRCMHL---------HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA-----AVRCVQY--DGRRVVSGAYD  258 (445)
T ss_dssp             ECCCSSCEEEEEE---------ETTEEEEEETTSEEEEEESSSCCEEEEEECCSS-----CEEEEEE--CSSCEEEEETT
T ss_pred             ECCCCCcEEEEEe---------cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc-----cEEEEEE--CCCEEEEEcCC
Confidence            3346678888887         355899999999999999999998888876654     8999999  57777755 99


Q ss_pred             CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEE
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF  273 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  273 (304)
                      +.|++||++..    ..    .....+|...+.+++|   ++.++++|+.||.|++||+++++++..+.+|...+.++.+
T Consensus       259 g~i~iwd~~~~----~~----~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~  327 (445)
T 2ovr_B          259 FMVKVWDPETE----TC----LHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL  327 (445)
T ss_dssp             SCEEEEEGGGT----EE----EEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE
T ss_pred             CEEEEEECCCC----cE----eEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE
Confidence            99999999763    11    1222567888999999   3458999999999999999999999999999999998888


Q ss_pred             CCCCcEEEEeeccCCeEEEEecccceee
Q 022019          274 SRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       274 ~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +  +.+|++++ .||.|++||+++++.+
T Consensus       328 ~--~~~l~~~~-~dg~i~vwd~~~~~~~  352 (445)
T 2ovr_B          328 K--DNILVSGN-ADSTVKIWDIKTGQCL  352 (445)
T ss_dssp             E--TTEEEEEE-TTSCEEEEETTTCCEE
T ss_pred             e--CCEEEEEe-CCCeEEEEECCCCcEE
Confidence            4  67999999 9999999999988654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=3.8e-27  Score=197.36  Aligned_cols=211  Identities=20%  Similarity=0.331  Sum_probs=170.0

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      +..|+.....      ....+.+|...|.+++|+  +.+|++|+.||.|++||+.+++..                 ...
T Consensus       181 i~vwd~~~~~------~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~-----------------~~~  235 (445)
T 2ovr_B          181 LKVWNAETGE------CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCL-----------------HVL  235 (445)
T ss_dssp             EEEEETTTTE------EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEE-----------------EEE
T ss_pred             EEEEECCcCc------EEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEE-----------------EEE
Confidence            3445554443      234678999999999995  578999999999999999865332                 133


Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCC
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK  194 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~  194 (304)
                      ..|...+.++.|         ++.++++++.||.|++||+++++....+..+..     .|.++.|  ++.+++++ .|+
T Consensus       236 ~~~~~~v~~~~~---------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~--~~~~l~~~~~d~  299 (445)
T 2ovr_B          236 MGHVAAVRCVQY---------DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN-----RVYSLQF--DGIHVVSGSLDT  299 (445)
T ss_dssp             ECCSSCEEEEEE---------CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS-----CEEEEEE--CSSEEEEEETTS
T ss_pred             cCCcccEEEEEE---------CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCC-----ceEEEEE--CCCEEEEEeCCC
Confidence            356678888877         677899999999999999999998888876554     8999999  67888855 999


Q ss_pred             eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc---ccCCeEEE
Q 022019          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG---QEGGVTHV  271 (304)
Q Consensus       195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~  271 (304)
                      .|++||+++..    ...    ...+|...+.++.+++   .++++|+.||.|++||+++++++..+.+   |...|+++
T Consensus       300 ~i~i~d~~~~~----~~~----~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  368 (445)
T 2ovr_B          300 SIRVWDVETGN----CIH----TLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL  368 (445)
T ss_dssp             CEEEEETTTCC----EEE----EECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE
T ss_pred             eEEEEECCCCC----EEE----EEcCCcccEEEEEEeC---CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEE
Confidence            99999998742    112    2256777788888764   4899999999999999999999999886   88899999


Q ss_pred             EECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          272 QFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       272 ~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +|+  +.+|++++ .||.|++||+++++.+
T Consensus       369 ~~~--~~~l~s~~-~dg~v~iwd~~~~~~~  395 (445)
T 2ovr_B          369 QFN--KNFVITSS-DDGTVKLWDLKTGEFI  395 (445)
T ss_dssp             EEC--SSEEEEEE-TTSEEEEEETTTCCEE
T ss_pred             EEC--CCEEEEEe-CCCeEEEEECCCCcee
Confidence            996  68999999 9999999999998754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.4e-28  Score=219.98  Aligned_cols=222  Identities=14%  Similarity=0.130  Sum_probs=161.3

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+.+|...+.+++|+|++++|+||+.||+|++||+.++..... .....  .   ....+...|...|.+++|       
T Consensus       430 ~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~-~~~~~--~---l~~~~~~~h~~~V~svaf-------  496 (902)
T 2oaj_A          430 LLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN-ASFEV--N---LSRTLNKAKELAVDKISF-------  496 (902)
T ss_dssp             SCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-BCEEE--E---HHHHTTCSSSCCEEEEEE-------
T ss_pred             cccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC-ceEEe--e---chhhcCCCCCCceeEEEe-------
Confidence            3567777888888899999999999999999999987643110 00000  0   000000146678999887       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCe---------------------------------------------eeEEeecccc
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGL---------------------------------------------LRCTYRAYDA  169 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~---------------------------------------------~~~~~~~~~~  169 (304)
                      +|++++||+|+.||+|+|||+.+++                                             +...+..   
T Consensus       497 spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~---  573 (902)
T 2oaj_A          497 AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA---  573 (902)
T ss_dssp             ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC---
T ss_pred             cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc---
Confidence            7899999999999999999998663                                             1233333   


Q ss_pred             cccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeecccc-ccccceeEEEee-----cCC--CcEEEE
Q 022019          170 VDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE-GQAGIMSAIAFS-----PTH--TGMLAI  240 (304)
Q Consensus       170 ~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-----p~~--~~~l~~  240 (304)
                        |...|++++|+|+| +||+| .|++|++||++.... ... ..+ .... +|...|++++|+     ||+  +.+|++
T Consensus       574 --h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~-~~~-~~~-~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~s  647 (902)
T 2oaj_A          574 --NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI-IYM-ENI-REISGAQSACVTCIEFVIMEYGDDGYSSILMVC  647 (902)
T ss_dssp             --CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE-EEE-EEG-GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEE
T ss_pred             --CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE-EEE-eeh-hHhccccccceEEEEEEEEecCCCCCcceEEEE
Confidence              34499999999999 88866 999999999875311 100 111 2333 889999999999     843  589999


Q ss_pred             EecCCeEEEEec---CCceEeEEecccc-----CCeEEEE-EC----------------------CCCcEEEEeeccCCe
Q 022019          241 GSYSQTSAIYRE---DNMELLYVLHGQE-----GGVTHVQ-FS----------------------RDGNYLYTGGRKDPY  289 (304)
Q Consensus       241 ~~~dg~i~i~d~---~~~~~~~~~~~~~-----~~v~~~~-~~----------------------~~~~~l~~~~~~d~~  289 (304)
                      |+.|++|++||+   .+++....+.+|.     ++|.+++ |+                      ++|..|+ ++  +..
T Consensus       648 gs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~-~~--~~~  724 (902)
T 2oaj_A          648 GTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLI-TG--FDD  724 (902)
T ss_dssp             EETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEE-EC--SSE
T ss_pred             EecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEE-Ee--ccc
Confidence            999999999999   7888888887764     6777776 65                      4554444 43  678


Q ss_pred             EEEEecccceee
Q 022019          290 ILCWDLRKAVQV  301 (304)
Q Consensus       290 i~vwd~~~~~~~  301 (304)
                      |+||++.+++++
T Consensus       725 ir~~~~~~~k~~  736 (902)
T 2oaj_A          725 IRLITLGKSKST  736 (902)
T ss_dssp             EEEECTTCCCEE
T ss_pred             eEEEeCccccce
Confidence            999999987654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.6e-28  Score=195.59  Aligned_cols=202  Identities=11%  Similarity=0.018  Sum_probs=149.2

Q ss_pred             cCCCCceeEEEEcC--CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           57 SIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        57 ~~h~~~V~~i~~s~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+|.+.|.+++|+|  ++++|++++.||+|++||+.++.....                ....+...+.+++|       
T Consensus       122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~----------------~~~~~~~~i~~~~~-------  178 (343)
T 3lrv_A          122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV----------------HSAKSDVEYSSGVL-------  178 (343)
T ss_dssp             CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEE----------------ECCCSSCCCCEEEE-------
T ss_pred             cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE----------------EecCCCCceEEEEE-------
Confidence            47889999999999  999999999999999999986543110                11223345777766       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeee-EEeec-ccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLR-CTYRA-YDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~  212 (304)
                      +|++.+|++|+.||.|++||+++++.. ..+.. |.     ..|.+++|+|++.+|+++.++.|++||++.... ...+.
T Consensus       179 ~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~-----~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~-~~~~~  252 (343)
T 3lrv_A          179 HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEE-----AKIKEVKFADNGYWMVVECDQTVVCFDLRKDVG-TLAYP  252 (343)
T ss_dssp             CTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTT-----SCEEEEEECTTSSEEEEEESSBEEEEETTSSTT-CBSSC
T ss_pred             CCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCC-----CCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCc-ceeec
Confidence            789999999999999999999998876 56655 43     399999999999999977577999999987432 11111


Q ss_pred             eeeccccccccce--eEEEeecCCCcEEEEEec-CCeEEEEecCCceEeEEeccccCCeEEEEECC---CCcEEEEeecc
Q 022019          213 TLKGNKEGQAGIM--SAIAFSPTHTGMLAIGSY-SQTSAIYREDNMELLYVLHGQEGGVTHVQFSR---DGNYLYTGGRK  286 (304)
Q Consensus       213 ~~~~~~~~~~~~v--~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~  286 (304)
                      .+    ..+...+  .+++|+| ++.+|++++. |+.|++|++.........    .++..+.|+|   ++..|++++ .
T Consensus       253 ~~----~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~-~  322 (343)
T 3lrv_A          253 TY----TIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVC-G  322 (343)
T ss_dssp             CC----BC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEE-E
T ss_pred             cc----ccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEe-c
Confidence            11    1122233  3699999 7789999888 999999998665433222    4677888988   888999999 8


Q ss_pred             CCeEEEEeccc
Q 022019          287 DPYILCWDLRK  297 (304)
Q Consensus       287 d~~i~vwd~~~  297 (304)
                      ||.+.++-...
T Consensus       323 d~~~~~~~~~~  333 (343)
T 3lrv_A          323 DGGIAAILKTN  333 (343)
T ss_dssp             TTEEEEEEECS
T ss_pred             CCceEEEEecC
Confidence            99998875443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=5.2e-29  Score=205.18  Aligned_cols=225  Identities=13%  Similarity=0.023  Sum_probs=140.8

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee-CCC
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS-DPT  137 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~  137 (304)
                      |...+....+++++.+|++++.|++|+|||+.++......            ......+|...|.+++|.|..... ..+
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~------------~~~~~~gH~~~v~~v~~~p~~~~~~~~d  155 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQH------------VLGGKSGHHNFVNDIDIADVYSADNRLA  155 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEE------------EECTTTSCSSCEEEEEEEEEECTTCSEE
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceee------------eecccCCCCCceEEEEEccccccccCCC
Confidence            3344444444556778999999999999998765331110            000123577899999997743322 237


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCc-EEEEE-cCCeEEEEEcCCCCccceeeee--
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-KIFAG-YNKSVRVFDVHRPGRDFEKYST--  213 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~d~~i~v~d~~~~~~~~~~~~~--  213 (304)
                      +++|++|+.|++|+|||++++.....+..+..     .|.+++|+|++. +|+++ .|+.|++||++++.........  
T Consensus       156 ~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~-----~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~  230 (393)
T 4gq1_A          156 EQVIASVGDDCTLIIWRLTDEGPILAGYPLSS-----PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL  230 (393)
T ss_dssp             EEEEEEEETTSEEEEEEEETTEEEEEEEECSS-----CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred             CCEEEEEECCCeEEEEECCCCceeeeecCCCC-----CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence            89999999999999999988877666655544     899999999875 56655 9999999999875322111100  


Q ss_pred             ---------------eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECC---
Q 022019          214 ---------------LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSR---  275 (304)
Q Consensus       214 ---------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~---  275 (304)
                                     ......+|...+.++.|++.++..+++++.|+.+++||+..+.....+..|...+..+.+.|   
T Consensus       231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~  310 (393)
T 4gq1_A          231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ  310 (393)
T ss_dssp             CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEE
T ss_pred             cccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccc
Confidence                           00112456778899999844788999999999999999988877666666655544444333   


Q ss_pred             -----------------CCcEEEEeeccCCeEEEEecccceee
Q 022019          276 -----------------DGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       276 -----------------~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                                       ++.++++|+ .||.|++||+.+++.+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~sgs-~Dg~V~lwd~~~~~~~  352 (393)
T 4gq1_A          311 GISLFPSLLGACPHPRYMDYFATAHS-QHGLIQLINTYEKDSN  352 (393)
T ss_dssp             EECSSCCSSCCEECSSCTTEEEEEET-TTTEEEEEETTCTTCC
T ss_pred             cccccCcceeEEEccCCCCEEEEEEC-CCCEEEEEECCCCcEE
Confidence                             334566777 8999999999988654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=1.1e-26  Score=193.16  Aligned_cols=211  Identities=17%  Similarity=0.283  Sum_probs=162.3

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      .++.|+||++ +.||+|. |++|+|||..+++.....               ....|...|++++|       +|+|++|
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~---------------~~~~~~~~V~sv~f-------spdg~~l  162 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLL---------------QMEQPGEYISSVAW-------IKEGNYL  162 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEE---------------ECCSTTCCEEEEEE-------CTTSSEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEE---------------EecCCCCcEEEEEE-------CCCCCEE
Confidence            4678999975 4777665 899999999876442111               11235567999988       7799999


Q ss_pred             EEEeCCCCEEEEEcCCCeeeEEeecccc------------------------------------cccccceEEEEECCCC
Q 022019          142 ASTTRDHPIHLWDATTGLLRCTYRAYDA------------------------------------VDEITAAFSVAFNPTG  185 (304)
Q Consensus       142 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------------------------------~~~~~~v~~i~~~~~~  185 (304)
                      ++|+.||.|++||+.+++.+..+..|..                                    ..+...+..+.|+|++
T Consensus       163 asgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g  242 (420)
T 4gga_A          163 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG  242 (420)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             EEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC
Confidence            9999999999999998887766554321                                    1234467888999999


Q ss_pred             cEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEE--ecCCeEEEEecCCceEeEEec
Q 022019          186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG--SYSQTSAIYREDNMELLYVLH  262 (304)
Q Consensus       186 ~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~  262 (304)
                      ++++++ .|+.+++||............    ....|...|.+++|+|.+..+++++  +.|+.|++||+.+++++..+.
T Consensus       243 ~~l~s~~~D~~v~i~~~~~~~~~~~~~~----~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~  318 (420)
T 4gga_A          243 RHLASGGNDNLVNVWPSAPGEGGWVPLQ----TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD  318 (420)
T ss_dssp             SEEEEEETTSCEEEEESSCCSSCSCCSE----EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE
T ss_pred             CeeeeeeccccceEEeeccccccceeee----eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec
Confidence            998865 899999999876533222222    2256778899999999878888765  479999999999999998888


Q ss_pred             cccCCeEEEEECCCCcEEEEee-ccCCeEEEEecccceee
Q 022019          263 GQEGGVTHVQFSRDGNYLYTGG-RKDPYILCWDLRKAVQV  301 (304)
Q Consensus       263 ~~~~~v~~~~~~~~~~~l~~~~-~~d~~i~vwd~~~~~~~  301 (304)
                      .| ..+.++.|+|++..+++++ ..|+.|+|||+.+++++
T Consensus       319 ~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v  357 (420)
T 4gga_A          319 AH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV  357 (420)
T ss_dssp             CS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred             cc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE
Confidence            54 5789999999999888764 26899999999998765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=2.7e-26  Score=183.48  Aligned_cols=210  Identities=17%  Similarity=0.266  Sum_probs=159.8

Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEE
Q 022019           63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (304)
Q Consensus        63 V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (304)
                      +++|+||+++ +||+| .|++|+|||+.+++.....               ....|...|.+++|       +|++++|+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~---------------~~~~~~~~V~~v~~-------~~~~~~l~   83 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL---------------QMEQPGEYISSVAW-------IKEGNYLA   83 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE---------------ECCSTTCCEEEEEE-------CTTSSEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE---------------EecCCCCeEEEEEE-------CCCCCEEE
Confidence            5789999876 67765 5999999999876542211               11235567999988       77999999


Q ss_pred             EEeCCCCEEEEEcCCCeeeEEeecccc------------------------------------cccccceEEEEECCCCc
Q 022019          143 STTRDHPIHLWDATTGLLRCTYRAYDA------------------------------------VDEITAAFSVAFNPTGT  186 (304)
Q Consensus       143 ~~~~dg~i~i~d~~~~~~~~~~~~~~~------------------------------------~~~~~~v~~i~~~~~~~  186 (304)
                      +|+.||+|++||+++++....+..+..                                    ..+...+..+.++++++
T Consensus        84 sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (318)
T 4ggc_A           84 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR  163 (318)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS
T ss_pred             EEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC
Confidence            999999999999999887766554321                                    12345678899999999


Q ss_pred             EEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEE--EEecCCeEEEEecCCceEeEEecc
Q 022019          187 KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA--IGSYSQTSAIYREDNMELLYVLHG  263 (304)
Q Consensus       187 ~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~  263 (304)
                      +++++ .|+.|++||+++.........    ....+...+.++.++|.+..++.  +++.++.|++||.+......... 
T Consensus       164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-  238 (318)
T 4ggc_A          164 HLASGGNDNLVNVWPSAPGEGGWVPLQ----TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-  238 (318)
T ss_dssp             EEEEEETTSCEEEEESSCBTTBSCCSE----EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-
T ss_pred             EEEEEecCcceeEEECCCCccccccee----eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-
Confidence            99965 999999999987533222111    12456677999999997666654  45678999999998887766654 


Q ss_pred             ccCCeEEEEECCCCcEEEEee-ccCCeEEEEecccceee
Q 022019          264 QEGGVTHVQFSRDGNYLYTGG-RKDPYILCWDLRKAVQV  301 (304)
Q Consensus       264 ~~~~v~~~~~~~~~~~l~~~~-~~d~~i~vwd~~~~~~~  301 (304)
                      +...+..+.|+|++..+++++ ..|+.|++||+++++.+
T Consensus       239 ~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~  277 (318)
T 4ggc_A          239 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV  277 (318)
T ss_dssp             CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred             ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE
Confidence            677899999999999887653 26899999999998765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=8.4e-26  Score=185.97  Aligned_cols=219  Identities=16%  Similarity=0.195  Sum_probs=165.2

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeE-EEecCCCeEEEeeCCCCCCccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (304)
                      .+..|+....+...      .+.+|. .+.+++|+|+|+++ ++++.|+.|++||+.+++..                  
T Consensus        13 ~v~v~d~~~~~~~~------~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~------------------   67 (391)
T 1l0q_A           13 NISVIDVTSNKVTA------TIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI------------------   67 (391)
T ss_dssp             EEEEEETTTTEEEE------EEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE------------------
T ss_pred             EEEEEECCCCeEEE------EeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE------------------
Confidence            35567766554333      455554 48999999999976 67778999999999765432                  


Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEE-EeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFAS-TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG  191 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~  191 (304)
                      ........+.+++|       +|+++.+++ ++.++.|++||+.+++....+..+.      .+.+++|+|+++.++ ++
T Consensus        68 ~~~~~~~~v~~~~~-------spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~  134 (391)
T 1l0q_A           68 ATVPAGSSPQGVAV-------SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK------SPLGLALSPDGKKLYVTN  134 (391)
T ss_dssp             EEEECSSSEEEEEE-------CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCccceEE-------CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC------CcceEEECCCCCEEEEEe
Confidence            22233346777777       778887754 4567999999999998877766543      678999999999885 55


Q ss_pred             -cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEE
Q 022019          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH  270 (304)
Q Consensus       192 -~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~  270 (304)
                       .++.|++||+++..    ....+    ..+ ..+.+++|+|++..++++++.++.|++||+++++.+..+. +...+.+
T Consensus       135 ~~~~~v~~~d~~~~~----~~~~~----~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~  204 (391)
T 1l0q_A          135 NGDKTVSVINTVTKA----VINTV----SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSG  204 (391)
T ss_dssp             TTTTEEEEEETTTTE----EEEEE----ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEE
T ss_pred             CCCCEEEEEECCCCc----EEEEE----ecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccc
Confidence             79999999997631    11221    122 3468999999555555788889999999999998887776 4567899


Q ss_pred             EEECCCCcEEEEeec--cCCeEEEEecccceee
Q 022019          271 VQFSRDGNYLYTGGR--KDPYILCWDLRKAVQV  301 (304)
Q Consensus       271 ~~~~~~~~~l~~~~~--~d~~i~vwd~~~~~~~  301 (304)
                      ++|+|+|++|++++.  .++.|++||+++++.+
T Consensus       205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~  237 (391)
T 1l0q_A          205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (391)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             eEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence            999999999998873  4899999999988654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.96  E-value=9.3e-27  Score=190.96  Aligned_cols=193  Identities=19%  Similarity=0.262  Sum_probs=146.7

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (304)
                      .+..|++........+.. ....+|...|.+++|++ ++.+|++|+.||+|++||+.....                ...
T Consensus       181 ~i~~wd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~----------------~~~  243 (380)
T 3iz6_a          181 TCVLWDVTTGQRISIFGS-EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR----------------AVR  243 (380)
T ss_dssp             CEEEECTTTCCEEEEECC-CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC----------------CCE
T ss_pred             cEEEEEcCCCcEEEEeec-ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc----------------ceE
Confidence            355677666554432110 12268999999999987 889999999999999999873211                112


Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccccc--ccccceEEEEECCCCcEEEEE
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV--DEITAAFSVAFNPTGTKIFAG  191 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~  191 (304)
                      ....|...|.+++|       +|++.+|++|+.||+|++||+++++....+..+...  .+...|.+++|+|+|+++++|
T Consensus       244 ~~~~h~~~v~~v~~-------~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g  316 (380)
T 3iz6_a          244 TYHGHEGDINSVKF-------FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG  316 (380)
T ss_dssp             EECCCSSCCCEEEE-------CTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE
T ss_pred             EECCcCCCeEEEEE-------ecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEE
Confidence            34456778888887       779999999999999999999999888777654321  122358899999999999977


Q ss_pred             -cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce
Q 022019          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME  256 (304)
Q Consensus       192 -~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~  256 (304)
                       .||.|++||+....    ....+.....+|...|.+++|+| ++.+|++|+.||.|++|++...+
T Consensus       317 ~~dg~i~vwd~~~~~----~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          317 YSNGDCYVWDTLLAE----MVLNLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CTTSCEEEEETTTCC----EEEEECCSCSSCCCCCCEEEECS-SSSEEEEECTTSCEEEEECCSSS
T ss_pred             ECCCCEEEEECCCCc----eEEEEecccCCCCCceEEEEECC-CCCEEEEeeCCCCEEEEecCCCc
Confidence             99999999997642    22223233367889999999999 78899999999999999987653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=1.9e-25  Score=183.83  Aligned_cols=217  Identities=18%  Similarity=0.217  Sum_probs=163.3

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEE-EecCCCeEEEeeCCCCCCccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (304)
                      .+..|+........      .+..|. .|.+++|+|++++|+ +++.|+.|++||+.+++..                  
T Consensus        55 ~i~v~d~~~~~~~~------~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~------------------  109 (391)
T 1l0q_A           55 DVSIIDTATNNVIA------TVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA------------------  109 (391)
T ss_dssp             EEEEEETTTTEEEE------EEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE------------------
T ss_pred             eEEEEECCCCeEEE------EEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEE------------------
Confidence            35566665554332      344443 899999999999875 5556799999999865331                  


Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEE-EEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG  191 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~  191 (304)
                      ....+...+.+++|       +|+++.+ ++++.++.|++||+.+++....+..+.      .+.+++|+|+++.++ ++
T Consensus       110 ~~~~~~~~~~~~~~-------s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~------~~~~~~~~~dg~~l~~~~  176 (391)
T 1l0q_A          110 GTVKTGKSPLGLAL-------SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR------SPKGIAVTPDGTKVYVAN  176 (391)
T ss_dssp             EEEECSSSEEEEEE-------CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS------SEEEEEECTTSSEEEEEE
T ss_pred             EEEeCCCCcceEEE-------CCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC------CcceEEECCCCCEEEEEe
Confidence            12223345667766       7788876 678889999999999998887776543      668999999999885 55


Q ss_pred             -cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEe---cCCeEEEEecCCceEeEEeccccCC
Q 022019          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNMELLYVLHGQEGG  267 (304)
Q Consensus       192 -~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~  267 (304)
                       .++.|++||++...    ....+     .+...+.+++|+| ++.++++++   .++.|++||+++++++..+..|. .
T Consensus       177 ~~~~~v~~~d~~~~~----~~~~~-----~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~  245 (391)
T 1l0q_A          177 FDSMSISVIDTVTNS----VIDTV-----KVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-D  245 (391)
T ss_dssp             TTTTEEEEEETTTTE----EEEEE-----ECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-S
T ss_pred             CCCCEEEEEECCCCe----EEEEE-----ecCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-C
Confidence             78999999998641    11111     1344688999999 566666666   68999999999999998888654 5


Q ss_pred             eEEEEECCCCcEEE-EeeccCCeEEEEecccceee
Q 022019          268 VTHVQFSRDGNYLY-TGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       268 v~~~~~~~~~~~l~-~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +.+++|+|+|++|+ +++ .|+.|++||+.+++.+
T Consensus       246 ~~~~~~s~dg~~l~~s~~-~d~~v~v~d~~~~~~~  279 (391)
T 1l0q_A          246 PAGIAVTPDGKKVYVALS-FXNTVSVIDTATNTIT  279 (391)
T ss_dssp             EEEEEECTTSSEEEEEET-TTTEEEEEETTTTEEE
T ss_pred             ccEEEEccCCCEEEEEcC-CCCEEEEEECCCCcEE
Confidence            78999999999885 555 8999999999988654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=1.2e-25  Score=187.43  Aligned_cols=225  Identities=13%  Similarity=0.163  Sum_probs=169.8

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      +..|+......... .....+.+|.+.|.+++|+|++.++++++.|+.|++||+.++....                 ..
T Consensus       146 i~~~d~~~g~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~-----------------~~  207 (433)
T 3bws_A          146 MDVLDINSGQTVRL-SPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA-----------------TV  207 (433)
T ss_dssp             EEEEETTTCCEEEE-CCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE-----------------EE
T ss_pred             EEEEECCCCeEeee-cCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE-----------------EE
Confidence            55566554433321 1111346899999999999999999999999999999997543321                 22


Q ss_pred             eecCCeEEEEeecCccceeCCCccEEE-EEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-c-
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFA-STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y-  192 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-  192 (304)
                      ..+...+.+++|       +|+++.++ +++.|+.|++||+++++....+..+.      .+.+++|+|+++.++++ . 
T Consensus       208 ~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~  274 (433)
T 3bws_A          208 DLTGKWSKILLY-------DPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG------LPRGLLLSKDGKELYIAQFS  274 (433)
T ss_dssp             ECSSSSEEEEEE-------ETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS------EEEEEEECTTSSEEEEEEEE
T ss_pred             cCCCCCeeEEEE-------cCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC------CceEEEEcCCCCEEEEEECC
Confidence            234567777777       66887775 55589999999999998877665533      68899999999988854 2 


Q ss_pred             -------CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc
Q 022019          193 -------NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE  265 (304)
Q Consensus       193 -------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  265 (304)
                             |+.|++||++...    ....     ..+...+.+++|+|++..++++++.|+.|++||+.+++.+..+. +.
T Consensus       275 ~~~~~~~dg~i~~~d~~~~~----~~~~-----~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~  344 (433)
T 3bws_A          275 ASNQESGGGRLGIYSMDKEK----LIDT-----IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VF  344 (433)
T ss_dssp             SCTTCSCCEEEEEEETTTTE----EEEE-----EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CS
T ss_pred             CCccccCCCeEEEEECCCCc----EEee-----ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CC
Confidence                   7899999998631    1111     12344688999999555677888999999999999999888886 67


Q ss_pred             CCeEEEEECCCCcEEEEeecc--------------CCeEEEEecccceee
Q 022019          266 GGVTHVQFSRDGNYLYTGGRK--------------DPYILCWDLRKAVQV  301 (304)
Q Consensus       266 ~~v~~~~~~~~~~~l~~~~~~--------------d~~i~vwd~~~~~~~  301 (304)
                      ..+.+++|+|+|++|++++..              ||.|++||+.+++.+
T Consensus       345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~  394 (433)
T 3bws_A          345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK  394 (433)
T ss_dssp             SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred             CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence            789999999999999988722              579999999988654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=1.6e-25  Score=181.93  Aligned_cols=203  Identities=10%  Similarity=0.059  Sum_probs=142.2

Q ss_pred             ceeEEEEcCCCCeE-EEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc----------
Q 022019           62 FLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH----------  130 (304)
Q Consensus        62 ~V~~i~~s~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------  130 (304)
                      .+..+++.++++.+ ++++.|++|++||+.+++......                  +...|.++.+.+.          
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~------------------~~~~v~~v~~~~~~~~~~~~~~i  121 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK------------------VDAPVKDLFLSREFIVVSYGDVI  121 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE------------------CSSCEEEEEECSSEEEEEETTEE
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE------------------CCCceEEEEEcCCEEEEEEcCEE
Confidence            58889999988877 567788999999998775533221                  1112222222111          


Q ss_pred             --------------------cceeCCCccEEEE--EeCCCCEEEEEcCCCe----------------eeEEeeccccccc
Q 022019          131 --------------------MSASDPTSCVFAS--TTRDHPIHLWDATTGL----------------LRCTYRAYDAVDE  172 (304)
Q Consensus       131 --------------------~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~  172 (304)
                                          ..++++  .++++  |+.||.|++||+.++.                ....+..|.    
T Consensus       122 ~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~----  195 (355)
T 3vu4_A          122 SVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT----  195 (355)
T ss_dssp             EEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCS----
T ss_pred             EEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC----
Confidence                                112233  34555  5889999999998765                134455444    


Q ss_pred             ccceEEEEECCCCcEEEEE-cCCe-EEEEEcCCCCccceeeeeeeccccc-cccceeEEEeecCCCcEEEEEecCCeEEE
Q 022019          173 ITAAFSVAFNPTGTKIFAG-YNKS-VRVFDVHRPGRDFEKYSTLKGNKEG-QAGIMSAIAFSPTHTGMLAIGSYSQTSAI  249 (304)
Q Consensus       173 ~~~v~~i~~~~~~~~l~~~-~d~~-i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~i  249 (304)
                       ..|.+++|+|++++|+++ .|++ |++||++++.    ....+.   .+ |...|.+++|+| ++.+|++++.|+.|++
T Consensus       196 -~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~----~~~~~~---~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~i  266 (355)
T 3vu4_A          196 -NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV----LVREFR---RGLDRADVVDMKWST-DGSKLAVVSDKWTLHV  266 (355)
T ss_dssp             -SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC----EEEEEE---CTTCCSCEEEEEECT-TSCEEEEEETTCEEEE
T ss_pred             -CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc----EEEEEE---cCCCCCcEEEEEECC-CCCEEEEEECCCEEEE
Confidence             499999999999999965 9998 9999998742    112221   24 788899999999 7889999999999999


Q ss_pred             EecCCceE--eEEec---------------------cccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          250 YREDNMEL--LYVLH---------------------GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       250 ~d~~~~~~--~~~~~---------------------~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      ||++....  ...+.                     .+......++|+|+|++|++++ .||.+++|++..+
T Consensus       267 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~-~dg~~~~~~~~~~  337 (355)
T 3vu4_A          267 FEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWP-HTRMIETFKVVFD  337 (355)
T ss_dssp             EESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEET-TTTEEEEEEEEEE
T ss_pred             EEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEe-CCCeEEEEEEEcC
Confidence            99975421  11111                     1122346799999999999999 9999999998764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=1.8e-24  Score=180.47  Aligned_cols=215  Identities=11%  Similarity=0.066  Sum_probs=161.3

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEE-EecCCCeEEEeeCCCCCCccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (304)
                      .+..|+.......      ..+..|...+.+++|+|++++++ +++.|+.|++||+.++....                 
T Consensus       192 ~v~~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~-----------------  248 (433)
T 3bws_A          192 AVHVFDLKTLAYK------ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR-----------------  248 (433)
T ss_dssp             EEEEEETTTCCEE------EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-----------------
T ss_pred             EEEEEECCCceEE------EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE-----------------
Confidence            3455665544333      35668899999999999999875 55589999999997653321                 


Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEe--------CCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCC
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTT--------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG  185 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  185 (304)
                       .......+..++|       +|+++.+++++        .||.|++||+.+++....+....      .+.+++|+|++
T Consensus       249 -~~~~~~~~~~~~~-------~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g  314 (433)
T 3bws_A          249 -KTDKIGLPRGLLL-------SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG------NKRHIVSGNTE  314 (433)
T ss_dssp             -ECCCCSEEEEEEE-------CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE------CEEEEEECSST
T ss_pred             -EecCCCCceEEEE-------cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC------CcceEEECCCC
Confidence             1122244666666       78998888887        58899999999988766553222      67899999999


Q ss_pred             cEEE-EE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec---------------CCeEE
Q 022019          186 TKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---------------SQTSA  248 (304)
Q Consensus       186 ~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---------------dg~i~  248 (304)
                      +.++ ++ .++.|++||++.. .   ....+     .+...+.+++|+| ++.++++++.               ||.|+
T Consensus       315 ~~l~~~~~~~~~v~v~d~~~~-~---~~~~~-----~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~  384 (433)
T 3bws_A          315 NKIYVSDMCCSKIEVYDLKEK-K---VQKSI-----PVFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVY  384 (433)
T ss_dssp             TEEEEEETTTTEEEEEETTTT-E---EEEEE-----ECSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred             CEEEEEecCCCEEEEEECCCC-c---EEEEe-----cCCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEE
Confidence            7665 54 8999999999853 1   11221     2345688999999 6666777665               57999


Q ss_pred             EEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          249 IYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       249 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      +||+.+++.+..+.. ...+.+++|+|+|++|++++..|+.|++|+++.
T Consensus       385 ~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          385 VIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            999999999888875 457899999999999998873599999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=8e-25  Score=176.80  Aligned_cols=173  Identities=16%  Similarity=0.230  Sum_probs=136.4

Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCe----eeEEeecccccccccceEEEEECC--CCcE
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL----LRCTYRAYDAVDEITAAFSVAFNP--TGTK  187 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~v~~i~~~~--~~~~  187 (304)
                      +...|...|.+++|       +|++++|++++.||.|++||+.++.    ....+..+..     .|.+++|+|  ++++
T Consensus         6 ~~~gH~~~v~~~~~-------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~d~~~   73 (351)
T 3f3f_A            6 FDSGHDDLVHDVVY-------DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS-----SIVAIDWASPEYGRI   73 (351)
T ss_dssp             EECCCSSCEEEEEE-------CSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS-----CEEEEEECCGGGCSE
T ss_pred             cCcccccceeEEEE-------cCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC-----cEEEEEEcCCCCCCE
Confidence            55678899999988       7789999999999999999998763    4444444443     899999999  5888


Q ss_pred             EEEE-cCCeEEEEEcCCCCcccee-eeeeeccccccccceeEEEeecCC--CcEEEEEecCCeEEEEecCCce-------
Q 022019          188 IFAG-YNKSVRVFDVHRPGRDFEK-YSTLKGNKEGQAGIMSAIAFSPTH--TGMLAIGSYSQTSAIYREDNME-------  256 (304)
Q Consensus       188 l~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~i~d~~~~~-------  256 (304)
                      |+++ .|+.|++||++........ ..........|...|.+++|+| +  +.+|++++.||.|++||+++++       
T Consensus        74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  152 (351)
T 3f3f_A           74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTL  152 (351)
T ss_dssp             EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEE
T ss_pred             EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccc
Confidence            8865 9999999999874321100 0011222356888999999999 6  7899999999999999986432       


Q ss_pred             -----------------------------------------------------EeEEeccccCCeEEEEECCCC----cE
Q 022019          257 -----------------------------------------------------LLYVLHGQEGGVTHVQFSRDG----NY  279 (304)
Q Consensus       257 -----------------------------------------------------~~~~~~~~~~~v~~~~~~~~~----~~  279 (304)
                                                                           .+..+.+|...|++++|+|++    .+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~  232 (351)
T 3f3f_A          153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL  232 (351)
T ss_dssp             EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEE
T ss_pred             cccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceE
Confidence                                                                 144566789999999999998    89


Q ss_pred             EEEeeccCCeEEEEeccccee
Q 022019          280 LYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       280 l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      |++++ .||.|++||++++..
T Consensus       233 l~s~~-~dg~i~iwd~~~~~~  252 (351)
T 3f3f_A          233 IATGC-KDGRIRIFKITEKLS  252 (351)
T ss_dssp             EEEEE-TTSCEEEEEEEECC-
T ss_pred             EEEEc-CCCeEEEEeCCCCcC
Confidence            99999 999999999987643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1.1e-23  Score=174.41  Aligned_cols=214  Identities=13%  Similarity=0.074  Sum_probs=155.7

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCC---eEEEeeCCCCCCccccccccccccCCccc
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK---TLRIFSLPENGISYDVNACSLAKDQDSYE  111 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  111 (304)
                      .+..|+.....       .+.+.+|...|.+++|+|+|++|++++.|+   .|++||+.+++..                
T Consensus       160 ~i~i~d~~g~~-------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~----------------  216 (415)
T 2hqs_A          160 ELRVSDYDGYN-------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----------------  216 (415)
T ss_dssp             EEEEEETTSCS-------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----------------
T ss_pred             eEEEEcCCCCC-------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE----------------
Confidence            45667664321       235667899999999999999999999875   9999999865321                


Q ss_pred             eEEEeecCCeEEEEeecCccceeCCCccEEE-EEeCCCC--EEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEE
Q 022019          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFA-STTRDHP--IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI  188 (304)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  188 (304)
                        ....+...+.+++|       +|+|+.|+ +++.++.  |++||+.+++.. .+..+.     ..+.+++|+|+|+.|
T Consensus       217 --~l~~~~~~~~~~~~-------spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-----~~~~~~~~spdg~~l  281 (415)
T 2hqs_A          217 --QVASFPRHNGAPAF-------SPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGR-----SNNTEPTWFPDSQNL  281 (415)
T ss_dssp             --EEECCSSCEEEEEE-------CTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCS-----SCEEEEEECTTSSEE
T ss_pred             --EeecCCCcccCEEE-------cCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcCCC-----CcccceEECCCCCEE
Confidence              22234456777777       88999777 6666665  999999887653 343333     278899999999988


Q ss_pred             EE-Ec-CC--eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC---CeEEEEecCCceEeEEe
Q 022019          189 FA-GY-NK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMELLYVL  261 (304)
Q Consensus       189 ~~-~~-d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~  261 (304)
                      +. +. ++  .|++||+....  .   ..+    ..+...+.+++|+| ++.+|++++.+   ..|++||+.+++.. .+
T Consensus       282 ~~~s~~~g~~~i~~~d~~~~~--~---~~l----~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l  350 (415)
T 2hqs_A          282 AFTSDQAGRPQVYKVNINGGA--P---QRI----TWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL  350 (415)
T ss_dssp             EEEECTTSSCEEEEEETTSSC--C---EEC----CCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCEE-EC
T ss_pred             EEEECCCCCcEEEEEECCCCC--E---EEE----ecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCEE-Ee
Confidence            84 43 45  67777886532  1   111    23445688999999 66677776654   58999999988764 45


Q ss_pred             ccccCCeEEEEECCCCcEEEEeeccCC---eEEEEecccce
Q 022019          262 HGQEGGVTHVQFSRDGNYLYTGGRKDP---YILCWDLRKAV  299 (304)
Q Consensus       262 ~~~~~~v~~~~~~~~~~~l~~~~~~d~---~i~vwd~~~~~  299 (304)
                      ..+. .+.+++|+|+|++|++++ .++   .|++||+..+.
T Consensus       351 ~~~~-~~~~~~~spdg~~l~~~s-~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          351 SSTF-LDETPSLAPNGTMVIYSS-SQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             CCSS-SCEEEEECTTSSEEEEEE-EETTEEEEEEEETTSCC
T ss_pred             cCCC-CcCCeEEcCCCCEEEEEE-cCCCccEEEEEECCCCc
Confidence            5554 899999999999999988 665   89999987543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=1.8e-24  Score=179.90  Aligned_cols=217  Identities=15%  Similarity=0.082  Sum_probs=149.8

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      ...++.+++++++.++++++.|+ +++|+..............  .............+...|.+++|       +|+++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~l~~-------spdg~  105 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDP--NKIVDKVQGLLVPMKFPIHHLAL-------SCDNL  105 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCT--TCEEECCCCEEECCSSCEEEEEE-------CTTSC
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCc--ccccccCccccccCCCcccEEEE-------cCCCC
Confidence            44689999999999999999887 8998764221100000000  00000111123445567888888       77899


Q ss_pred             EEE----EEeCCCCEEEEEcCCC--------eeeEEeecccccccccceEEEEECCC-CcEEEEE-cCCeEEEEEcCCCC
Q 022019          140 VFA----STTRDHPIHLWDATTG--------LLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAG-YNKSVRVFDVHRPG  205 (304)
Q Consensus       140 ~l~----~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~v~d~~~~~  205 (304)
                      +|+    +++.|+.|++||+.++        +....+....  .|...|.+++|+|+ +.+|+++ .||+|++||++...
T Consensus       106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~  183 (434)
T 2oit_A          106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK--DAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV  183 (434)
T ss_dssp             EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCC--SGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred             EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccC--CCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence            999    7888999999998754        2222222211  23448999999998 7888854 99999999998741


Q ss_pred             ccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccc-------cCCeEEEEECCCCc
Q 022019          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-------EGGVTHVQFSRDGN  278 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~  278 (304)
                          ...    ...+|...+.+++|+| ++.+|++|+.||.|++||.+ ++....+..|       ...|.+++|++++.
T Consensus       184 ----~~~----~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~  253 (434)
T 2oit_A          184 ----KVC----ATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV  253 (434)
T ss_dssp             ----EEE----EEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred             ----cee----eccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce
Confidence                111    1134677899999999 68899999999999999998 5555555433       23799999999998


Q ss_pred             EEEEeeccCC------eEEEEecccc
Q 022019          279 YLYTGGRKDP------YILCWDLRKA  298 (304)
Q Consensus       279 ~l~~~~~~d~------~i~vwd~~~~  298 (304)
                      ++++.+..||      .+++|++++.
T Consensus       254 ~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          254 FAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEEEccCCCccCCCCceEEEEeccC
Confidence            8866543443      3899999865

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=5.2e-23  Score=162.47  Aligned_cols=219  Identities=14%  Similarity=0.131  Sum_probs=152.7

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCC-CCCccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPE-NGISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~  113 (304)
                      .+..|+.......       .+..|...|.+++|+|+|++|++++ ++.|.+||+.+ +........             
T Consensus        23 ~i~~~d~~~~~~~-------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~-------------   81 (297)
T 2ojh_A           23 SIEIFNIRTRKMR-------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG-------------   81 (297)
T ss_dssp             EEEEEETTTTEEE-------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT-------------
T ss_pred             eEEEEeCCCCcee-------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc-------------
Confidence            4566776654332       3445788999999999999999887 78999999986 533211100             


Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEe--CCCCEEEEEc--CCCeeeEEeecccccccccceEEEEECCCCcEEE
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTT--RDHPIHLWDA--TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  189 (304)
                         .+...+.+++|       +|++++|++++  .++...||.+  .++.. ..+....      .+..++|+|+++.++
T Consensus        82 ---~~~~~~~~~~~-------spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~------~~~~~~~spdg~~l~  144 (297)
T 2ojh_A           82 ---FATICNNDHGI-------SPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNL------PSYWHGWSPDGKSFT  144 (297)
T ss_dssp             ---TCCCBCSCCEE-------CTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSS------SEEEEEECTTSSEEE
T ss_pred             ---cccccccceEE-------CCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecCC------CccceEECCCCCEEE
Confidence               01134445555       88999999998  3345555554  44442 2232222      578899999999887


Q ss_pred             -EE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEE-ecCCeEEEEecC-CceEeEEecccc
Q 022019          190 -AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYRED-NMELLYVLHGQE  265 (304)
Q Consensus       190 -~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~i~d~~-~~~~~~~~~~~~  265 (304)
                       ++ .++.+++|+++.......   .    ...+...+.+++|+| ++..|+++ ..++.+++|++. .+..+..+..|.
T Consensus       145 ~~~~~~~~~~l~~~~~~~~~~~---~----~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  216 (297)
T 2ojh_A          145 YCGIRDQVFDIYSMDIDSGVET---R----LTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA  216 (297)
T ss_dssp             EEEEETTEEEEEEEETTTCCEE---E----CCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS
T ss_pred             EEECCCCceEEEEEECCCCcce---E----cccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCC
Confidence             55 899999999754322211   1    134556789999999 55555544 468999999886 455667777788


Q ss_pred             CCeEEEEECCCCcEEEEeeccC-----------CeEEEEeccccee
Q 022019          266 GGVTHVQFSRDGNYLYTGGRKD-----------PYILCWDLRKAVQ  300 (304)
Q Consensus       266 ~~v~~~~~~~~~~~l~~~~~~d-----------~~i~vwd~~~~~~  300 (304)
                      ..+.+++|+|+|++|++++ .+           +.|.+||+.+++.
T Consensus       217 ~~~~~~~~s~dg~~l~~~~-~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          217 YGDWFPHPSPSGDKVVFVS-YDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             EEEEEEEECTTSSEEEEEE-EETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             cccCCeEECCCCCEEEEEE-cCCCCCcccccCceEEEEEecCCCCc
Confidence            8899999999999999888 54           5799999988754

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=8.5e-23  Score=160.14  Aligned_cols=208  Identities=11%  Similarity=0.110  Sum_probs=131.0

Q ss_pred             ceeEEEEcCCCC---eEEEecCCCeEEEeeCCCC---CCccccccccccccCCccceEEEeecCCeEEEEeecC------
Q 022019           62 FLKGIKWSPDGS---SFLTSSEDKTLRIFSLPEN---GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP------  129 (304)
Q Consensus        62 ~V~~i~~s~~~~---~l~s~~~dg~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------  129 (304)
                      .|.++.|-..|-   .+++++. ..|++|+..+.   +..+.                 ...+..+|..+.+.|      
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~~~~~~  102 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYT-----------------WHFAEVPVLQIVPVPDVYNLV  102 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEE-----------------EECCSSCEEEECCCTTCCSCE
T ss_pred             EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEE-----------------EeccCceeEEEEEcCccccee
Confidence            366777765443   6777775 58999999876   22111                 111222333333333      


Q ss_pred             ------------ccceeCCC----ccEEEEEeC--------------------CCCEEEEEcC-CCeeeEEeeccccccc
Q 022019          130 ------------HMSASDPT----SCVFASTTR--------------------DHPIHLWDAT-TGLLRCTYRAYDAVDE  172 (304)
Q Consensus       130 ------------~~~~~~~~----~~~l~~~~~--------------------dg~i~i~d~~-~~~~~~~~~~~~~~~~  172 (304)
                                  ..++++|+    ++++++++.                    |+.|++|++. +++....+..+..   
T Consensus       103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~---  179 (356)
T 2w18_A          103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP---  179 (356)
T ss_dssp             EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC---
T ss_pred             eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCC---
Confidence                        12344666    666665543                    7777778773 3666665555544   


Q ss_pred             ccceEEEEECC---CCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEE----------
Q 022019          173 ITAAFSVAFNP---TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML----------  238 (304)
Q Consensus       173 ~~~v~~i~~~~---~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l----------  238 (304)
                        .+..++|+|   ++..|+++ .|++|+|||+.++.    .+..+... ..+...+.+++|+| ++.++          
T Consensus       180 --~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk----~l~tL~g~-~~~v~~v~~vafSp-dG~~lvs~s~~~~~w  251 (356)
T 2w18_A          180 --EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ----LLKKMHID-DSYQASVCHKAYSE-MGLLFIVLSHPCAKE  251 (356)
T ss_dssp             --SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC----EEEEEECC-C---CCCEEEEEEE-TTEEEEEEC------
T ss_pred             --ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc----EEEEEcCC-CcceeeeEEEEECC-CCCEEEEeccCCCcc
Confidence              677888888   67889864 99999999998742    22333211 11234577889999 56655          


Q ss_pred             --EEEecCCeEEEEecCCceEeEEe-----ccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          239 --AIGSYSQTSAIYREDNMELLYVL-----HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       239 --~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                        ++|+.|++|++||..+++.+..+     .+|...+.+..++  +.++++++ .|++|+|||+.+++++
T Consensus       252 ~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS-~DgTIkIWDl~tGk~l  318 (356)
T 2w18_A          252 SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAIL-TSGTIAIWDLLLGQCT  318 (356)
T ss_dssp             ------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCSEE
T ss_pred             eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEc-CCCcEEEEECCCCcEE
Confidence              66888999999999999887665     3676666555554  88999999 9999999999999765

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=5.6e-22  Score=169.18  Aligned_cols=209  Identities=13%  Similarity=0.118  Sum_probs=142.6

Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEeeC--CCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC----
Q 022019           63 LKGIKWSPDGSSFLTSSEDKTLRIFSL--PENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP----  136 (304)
Q Consensus        63 V~~i~~s~~~~~l~s~~~dg~v~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----  136 (304)
                      +.+++|+|+|++|++++.|++|++||+  .+++...                  .+..+.....++       |+|    
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~------------------~i~~g~~p~~va-------~sp~~~~  235 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA------------------EIKIGIEARSVE-------SSKFKGY  235 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE------------------EEECCSEEEEEE-------ECCSTTC
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEE------------------EEecCCCcceEE-------eCCCcCC
Confidence            889999999999999999999999999  4432211                  112223333333       366    


Q ss_pred             CccEEEEEeC-CCCEEEEEcCCCeeeEEeeccc----------c------------------------------------
Q 022019          137 TSCVFASTTR-DHPIHLWDATTGLLRCTYRAYD----------A------------------------------------  169 (304)
Q Consensus       137 ~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~----------~------------------------------------  169 (304)
                      +|+++++++. +++|.+||..+++.+..+....          .                                    
T Consensus       236 dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l  315 (543)
T 1nir_A          236 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL  315 (543)
T ss_dssp             TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC
T ss_pred             CCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc
Confidence            6766666653 6677777766665554443210          0                                    


Q ss_pred             ----cccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEe-
Q 022019          170 ----VDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-  242 (304)
Q Consensus       170 ----~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-  242 (304)
                          ......+.++.|+|+|++++ ++ .+++|.+||+.++    +....+......|.+....+ ++|+++.+++++. 
T Consensus       316 ~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg----~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~  390 (543)
T 1nir_A          316 TVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR----RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHL  390 (543)
T ss_dssp             EEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT----EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred             eeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC----eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccC
Confidence                00011345678899998777 44 6889999998764    12222221112343333333 5785677778776 


Q ss_pred             cCCeEEEEecCC-------ceEeEEeccccCCeEEEEECCCCcEEEEeec------cCCeEEEEecccceee
Q 022019          243 YSQTSAIYREDN-------MELLYVLHGQEGGVTHVQFSRDGNYLYTGGR------KDPYILCWDLRKAVQV  301 (304)
Q Consensus       243 ~dg~i~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------~d~~i~vwd~~~~~~~  301 (304)
                      .|++|.+||+.+       ++++.++.+|...+..+.++|+|++|++++.      .+++|.|||+.+++.+
T Consensus       391 ~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          391 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence            589999999988       8999999999888899999999999998861      1679999999987654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=2e-22  Score=166.97  Aligned_cols=220  Identities=14%  Similarity=0.119  Sum_probs=158.5

Q ss_pred             ceeeecC--CCcccccccceeeeecCCCCceeEEEEcC--------------CCCeEEEecCC------CeEEEeeCCCC
Q 022019           35 PLIRFDV--PPHRTYHFYNQFRTSSIPNNFLKGIKWSP--------------DGSSFLTSSED------KTLRIFSLPEN   92 (304)
Q Consensus        35 ~~~~~~~--~~~~~~~~~~~~~~~~~h~~~V~~i~~s~--------------~~~~l~s~~~d------g~v~vwd~~~~   92 (304)
                      .+.+||+  ...+...    -..+.+|...+..+++++              .+..++.++.+      +.|++||+...
T Consensus        94 ~i~lwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~  169 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLA----QNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY  169 (415)
T ss_dssp             EEEEEECSSSTTCEEE----EEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC
T ss_pred             EEEEEeCCCCCCCEEe----eeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC
Confidence            4567887  5554331    125678888888888775              15666666554      79999998632


Q ss_pred             CCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCC---CEEEEEcCCCeeeEEeecccc
Q 022019           93 GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH---PIHLWDATTGLLRCTYRAYDA  169 (304)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~  169 (304)
                      ..                  .....+...+.+++|       +|+|+.|++++.++   .|++||+.+++... +..+..
T Consensus       170 ~~------------------~~l~~~~~~v~~~~~-------Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~~~  223 (415)
T 2hqs_A          170 NQ------------------FVVHRSPQPLMSPAW-------SPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPR  223 (415)
T ss_dssp             SC------------------EEEEEESSCEEEEEE-------CTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSS
T ss_pred             CC------------------EEEeCCCCcceeeEE-------cCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecCCC
Confidence            11                  133456678888888       88999999999875   89999999887653 333332


Q ss_pred             cccccceEEEEECCCCcEEE-EE-cCC--eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec-C
Q 022019          170 VDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-S  244 (304)
Q Consensus       170 ~~~~~~v~~i~~~~~~~~l~-~~-~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d  244 (304)
                           .+.+++|+|+|+.|+ ++ .++  .|++||+.+...     ..    ...+...+.+++|+| ++..|++++. +
T Consensus       224 -----~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-----~~----l~~~~~~~~~~~~sp-dg~~l~~~s~~~  288 (415)
T 2hqs_A          224 -----HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-----RQ----VTDGRSNNTEPTWFP-DSQNLAFTSDQA  288 (415)
T ss_dssp             -----CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----EE----CCCCSSCEEEEEECT-TSSEEEEEECTT
T ss_pred             -----cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-----Ee----CcCCCCcccceEECC-CCCEEEEEECCC
Confidence                 788999999999888 54 444  599999976321     11    144566789999999 5666666665 4


Q ss_pred             C--eEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeecc--CCeEEEEeccccee
Q 022019          245 Q--TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK--DPYILCWDLRKAVQ  300 (304)
Q Consensus       245 g--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--d~~i~vwd~~~~~~  300 (304)
                      +  .|++||+.+++. ..+..+...+.+++|+|+|++|++++..  +..|.+||+.+++.
T Consensus       289 g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          289 GRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  347 (415)
T ss_dssp             SSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             CCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence            5  688889887764 3455577789999999999999988823  25899999988754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=1.4e-21  Score=157.09  Aligned_cols=225  Identities=15%  Similarity=0.151  Sum_probs=155.1

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecC-CCeEEEeeCCCCCCccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (304)
                      .+..|+........      ....+...+ +++|+|+|+++++++. ++.|.+||+.++...                ..
T Consensus        21 ~v~~~d~~~~~~~~------~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~----------------~~   77 (331)
T 3u4y_A           21 RISFFSTDTLEILN------QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK----------------VV   77 (331)
T ss_dssp             EEEEEETTTCCEEE------EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----------------EE
T ss_pred             eEEEEeCcccceee------eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----------------EE
Confidence            35566666554433      333455566 9999999997666555 889999999865430                00


Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEeCCC---CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH---PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-  189 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-  189 (304)
                      ....+..+..++       +++|++++++++..++   .|.+||+.+++....+....      .+.+++|+|+|++++ 
T Consensus        78 ~~~~~~~~~~~~-------~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~spdg~~l~~  144 (331)
T 3u4y_A           78 AIQEGQSSMADV-------DITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY------DAVGIAISPNGNGLIL  144 (331)
T ss_dssp             EEEECSSCCCCE-------EECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT------TEEEEEECTTSSCEEE
T ss_pred             ecccCCCCccce-------EECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC------CccceEECCCCCEEEE
Confidence            111122222223       4588999998655553   89999999998877765533      568999999998666 


Q ss_pred             EE-cCCe-EEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE---eEEeccc
Q 022019          190 AG-YNKS-VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL---LYVLHGQ  264 (304)
Q Consensus       190 ~~-~d~~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~  264 (304)
                      ++ .++. |.+|++...+.........    ......+..++|+|++..+++++..++.|++||+.+++.   +..+.. 
T Consensus       145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-  219 (331)
T 3u4y_A          145 IDRSSANTVRRFKIDADGVLFDTGQEF----ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-  219 (331)
T ss_dssp             EEETTTTEEEEEEECTTCCEEEEEEEE----ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-
T ss_pred             EecCCCceEEEEEECCCCcEeecCCcc----ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-
Confidence            44 5577 9999998543222111111    122334789999995444566666789999999998887   777764 


Q ss_pred             cCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       265 ~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      ...+..++|+|+|++|++++..++.|.+||+.+++.
T Consensus       220 ~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          220 NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            456789999999998877764688999999998865

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=8.6e-21  Score=153.60  Aligned_cols=232  Identities=10%  Similarity=0.103  Sum_probs=147.3

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEec-CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      .+..|...+..++|+|+|++|++++ .++.|.+|++................  ....   .......+..++|      
T Consensus        80 ~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~--~~p~---~~~~~~~~~~~~~------  148 (347)
T 3hfq_A           80 TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG--HGPR---PEQDGSHIHYTDL------  148 (347)
T ss_dssp             EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC--CCSS---TTCSSCCEEEEEE------
T ss_pred             eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC--CCCC---ccccCCCceEEEE------
Confidence            3345677899999999999888887 68999999986322111100000000  0000   0001123455555      


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcC-CCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCcccee
Q 022019          134 SDPTSCVFASTTRDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~  210 (304)
                       +|+|+++++...++.|++|++. +++.........  .....+..++|+|+|++++ ++ .++.|.+|++.........
T Consensus       149 -spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~--~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~  225 (347)
T 3hfq_A          149 -TPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTM--EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ  225 (347)
T ss_dssp             -CTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEEC--CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             -CCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEc--CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence             8899966666778899999998 554332221111  1112567899999999777 45 7899999999753222222


Q ss_pred             eeeeeccccc--cccceeEEEeecCCCcEEEEEecCCeEEEEecC---CceEeEEeccccCCeEEEEECCCCcEEEEeec
Q 022019          211 YSTLKGNKEG--QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR  285 (304)
Q Consensus       211 ~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  285 (304)
                      .........+  ....+..++|+|++..++++...++.|.+|++.   ..+.+..+..+...+..++|+|||++|++++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~  305 (347)
T 3hfq_A          226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ  305 (347)
T ss_dssp             EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET
T ss_pred             eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc
Confidence            2222211111  113478899999444444666678999999997   33566667666667899999999999998884


Q ss_pred             cCCeEEEE--eccccee
Q 022019          286 KDPYILCW--DLRKAVQ  300 (304)
Q Consensus       286 ~d~~i~vw--d~~~~~~  300 (304)
                      .++.|.+|  |..+++.
T Consensus       306 ~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          306 NTDNATLYARDLTSGKL  322 (347)
T ss_dssp             TTTEEEEEEECTTTCCE
T ss_pred             CCCcEEEEEEeCCCCeE
Confidence            56899999  5455543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=4.5e-21  Score=154.70  Aligned_cols=210  Identities=16%  Similarity=0.189  Sum_probs=139.7

Q ss_pred             ceeEEEEcCCCCeEEEec-CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccE
Q 022019           62 FLKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (304)
                      .+.+++|+|+|++|++++ .++.|.+||+.++...               ...........+.       .++++|+++.
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~---------------~~~~~~~~~~~~~-------~~~~s~dg~~  142 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV---------------GVVDVVEGLDGCH-------SANISPDNRT  142 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE---------------EEEEEECCCTTBC-------CCEECTTSSE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc---------------cccccccCCCCce-------EEEECCCCCE
Confidence            789999999999876665 4889999998521100               0001111122233       3455889988


Q ss_pred             EEEEe-CCCCEEEEEcCC-CeeeEEe--ecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeeee
Q 022019          141 FASTT-RDHPIHLWDATT-GLLRCTY--RAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       141 l~~~~-~dg~i~i~d~~~-~~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      +++++ .++.|++||+.+ ++.....  ....  .....+.+++|+|++++++ ++ .++.|.+||+.............
T Consensus       143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~  220 (343)
T 1ri6_A          143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTT--VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL  220 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC--STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred             EEEecCCCCEEEEEEecCCCceeeeccccccc--CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec
Confidence            88777 899999999987 6543322  1111  1112677899999999776 55 78999999996432222222222


Q ss_pred             eccccc--cccceeEEEeecCCCcEEEEEecCCeEEEEecC----CceEeEEeccccCCeEEEEECCCCcEEEEeeccCC
Q 022019          215 KGNKEG--QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED----NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP  288 (304)
Q Consensus       215 ~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~  288 (304)
                      .....+  ....+..++|+|++..+++++..++.|.+||+.    ..+.+..+..+.. +.+++|+|+|++|++++..++
T Consensus       221 ~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~  299 (343)
T 1ri6_A          221 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSH  299 (343)
T ss_dssp             ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTC
T ss_pred             cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCC
Confidence            211111  123467899999544455566679999999998    3456666665444 889999999999888875689


Q ss_pred             eEEEEecc
Q 022019          289 YILCWDLR  296 (304)
Q Consensus       289 ~i~vwd~~  296 (304)
                      .|.+|++.
T Consensus       300 ~v~v~~~d  307 (343)
T 1ri6_A          300 HISVYEIV  307 (343)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEc
Confidence            99999554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=6.4e-21  Score=153.43  Aligned_cols=229  Identities=14%  Similarity=0.083  Sum_probs=155.6

Q ss_pred             ceeeecCCCcccccccceeeeec-CCCC-ceeEEEEcCCCCeE-EEecCCCeEEEeeCCCCCCccccccccccccCCccc
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSS-IPNN-FLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE  111 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~V~~i~~s~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  111 (304)
                      .+..|+........      .+. ++.. .+.+++|+|+|+++ +++..++.|.+||+.+++......            
T Consensus        12 ~v~~~d~~~~~~~~------~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~------------   73 (337)
T 1pby_B           12 KLVVIDTEKMAVDK------VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID------------   73 (337)
T ss_dssp             EEEEEETTTTEEEE------EEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE------------
T ss_pred             eEEEEECCCCcEEE------EEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE------------
Confidence            35566665544332      222 2222 48899999999865 556678999999998654321111            


Q ss_pred             eEEEeecCCeEEEEeecCccceeCCCccEEEEEe------------CCCCEEEEEcCCCeeeEEeecccccccccceEEE
Q 022019          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT------------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSV  179 (304)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i  179 (304)
                          ..+...   ..-.|..++++|+++.+++++            .++.|.+||+.+++....+....      .+.++
T Consensus        74 ----~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~  140 (337)
T 1pby_B           74 ----LSTPEE---RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR------QITML  140 (337)
T ss_dssp             ----CCBTTE---EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS------SCCCE
T ss_pred             ----cCCccc---ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC------Cccee
Confidence                110000   011244456689999888886            57999999999988776665432      56789


Q ss_pred             EECCCCcEEEEEcCCeEEEEEcCCCCccceeeee----------------------------------------------
Q 022019          180 AFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYST----------------------------------------------  213 (304)
Q Consensus       180 ~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~----------------------------------------------  213 (304)
                      +|+|++++++++ ++.|++||+..... ...+..                                              
T Consensus       141 ~~s~dg~~l~~~-~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (337)
T 1pby_B          141 AWARDGSKLYGL-GRDLHVMDPEAGTL-VEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYR  218 (337)
T ss_dssp             EECTTSSCEEEE-SSSEEEEETTTTEE-EEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEE
T ss_pred             EECCCCCEEEEe-CCeEEEEECCCCcE-eeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccc
Confidence            999999988866 78999999876321 100000                                              


Q ss_pred             -----eec--------cccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEE
Q 022019          214 -----LKG--------NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYL  280 (304)
Q Consensus       214 -----~~~--------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  280 (304)
                           +..        ....+...+.+++|+| ++.+++++  ++.|++||+.+++.+..+.. ...+.+++|+|+|++|
T Consensus       219 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l  294 (337)
T 1pby_B          219 TGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTV  294 (337)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEE
T ss_pred             cceEEEeCCCCCceEeecCCCCCceeeEEECC-CCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEE
Confidence                 000        0001112355799999 66667766  69999999999988887764 3467899999999999


Q ss_pred             EEeeccCCeEEEEecccceee
Q 022019          281 YTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       281 ~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      ++++ .++.|.+||+.+++.+
T Consensus       295 ~~~~-~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          295 WLGG-ALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EEES-BSSEEEEEETTTCCEE
T ss_pred             EEEc-CCCcEEEEECcCCcEE
Confidence            9998 8999999999988654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=4e-21  Score=163.92  Aligned_cols=202  Identities=12%  Similarity=0.026  Sum_probs=150.4

Q ss_pred             EEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeC
Q 022019           67 KWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR  146 (304)
Q Consensus        67 ~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~  146 (304)
                      .|+|++.++++++.|++|.+||..+++....                  +..+..+..++       ++|+|++|++++.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~------------------i~~g~~~~~v~-------~spdg~~l~v~~~  198 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKV------------------IDTGYAVHISR-------MSASGRYLLVIGR  198 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEE------------------EECSTTEEEEE-------ECTTSCEEEEEET
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEE------------------EecCcccceEE-------ECCCCCEEEEECC
Confidence            3889999999999999999999986644211                  11112244444       4899999999999


Q ss_pred             CCCEEEEEc--CCCeeeEEeecccccccccceEEEEECC----CCcEEEEE--cCCeEEEEEcCCCCccceeeeeeeccc
Q 022019          147 DHPIHLWDA--TTGLLRCTYRAYDAVDEITAAFSVAFNP----TGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       147 dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~v~~i~~~~----~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                      |+.|.+||+  .+++.+..+....      .+..++|+|    +|++++++  .+++|.+||..+. .....+.......
T Consensus       199 d~~V~v~D~~~~t~~~~~~i~~g~------~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~~  271 (543)
T 1nir_A          199 DARIDMIDLWAKEPTKVAEIKIGI------EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTV  271 (543)
T ss_dssp             TSEEEEEETTSSSCEEEEEEECCS------EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECS
T ss_pred             CCeEEEEECcCCCCcEEEEEecCC------CcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-ccceeecccCccc
Confidence            999999999  7888777776432      678999999    99999955  5899999998763 2222211100000


Q ss_pred             c---cc-ccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeE--EeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          219 E---GQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY--VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       219 ~---~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                      .   -| ...+.++.++|+++.++++...++.|.+||..+.+.+.  .+. +...+.++.|+|+|++|++++..+++|.+
T Consensus       272 ~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v  350 (543)
T 1nir_A          272 DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAV  350 (543)
T ss_dssp             SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred             CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEE
Confidence            0   02 23688999999778888888899999999998765433  443 56678899999999988877647899999


Q ss_pred             Eecccceee
Q 022019          293 WDLRKAVQV  301 (304)
Q Consensus       293 wd~~~~~~~  301 (304)
                      ||+.+++.+
T Consensus       351 ~D~~tg~l~  359 (543)
T 1nir_A          351 IDSKDRRLS  359 (543)
T ss_dssp             EETTTTEEE
T ss_pred             EECCCCeEE
Confidence            999998754

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=8.8e-22  Score=163.68  Aligned_cols=217  Identities=12%  Similarity=0.099  Sum_probs=139.7

Q ss_pred             CCCCceeEEEEcCCCCeEE----EecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           58 IPNNFLKGIKWSPDGSSFL----TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~----s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      .|.+.|++++|+|+|++|+    +|+.|+.|+|||+.+........      ............|...|.+++|      
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~------~~~~~~~~~~~~h~~~V~~v~~------  157 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQ------KRPFAYHKLLKDAGGMVIDMKW------  157 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSS------CCCSEEEECCCSGGGSEEEEEE------
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCC------cceeeeeeccCCCCCceEEEEE------
Confidence            4567899999999999999    88999999999986431000000      0000001122346788999999      


Q ss_pred             eCCC-ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceee
Q 022019          134 SDPT-SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       134 ~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                       +|+ +.+|++++.||+|++||++++........+.     ..|.+++|+|+|++|++| .||.|++||++.  .....+
T Consensus       158 -~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~-----~~v~~v~wspdg~~lasgs~dg~v~iwd~~~--~~~~~~  229 (434)
T 2oit_A          158 -NPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST-----VAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL--QEKKVI  229 (434)
T ss_dssp             -CSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG-----GCEEEEEECTTSSCEEEEETTSCEEEECTTC--CEEEEE
T ss_pred             -CCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC-----CceeEEEEcCCCCEEEEEcCCCcEEEEccCC--cccccc
Confidence             445 7899999999999999999886554444333     389999999999999966 999999999972  111111


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEE-EecCC------eEEEEecCCce-----EeEEec-------cccCCeEEEE
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAI-GSYSQ------TSAIYREDNME-----LLYVLH-------GQEGGVTHVQ  272 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg------~i~i~d~~~~~-----~~~~~~-------~~~~~v~~~~  272 (304)
                      .........|...+.+++|++ +..++++ ++.+|      .+++|+++...     ....+.       +...+-..+.
T Consensus       230 ~~~~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  308 (434)
T 2oit_A          230 PCPPFYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLS  308 (434)
T ss_dssp             CCCTTCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEE
T ss_pred             cCCcccCCCCceeEEEEEEec-CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeee
Confidence            111001112345799999999 5555543 44443      38999997542     111211       1222333444


Q ss_pred             ECCCCcEEEEeeccCCeEEEEec
Q 022019          273 FSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       273 ~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      +-++.+++++++...+.|.|...
T Consensus       309 ~l~dw~l~~v~s~~s~dv~vl~~  331 (434)
T 2oit_A          309 YIEEWDLVLAASAASTEVSILAR  331 (434)
T ss_dssp             EEGGGTEEEEEETTCSBCEEEEE
T ss_pred             hhccCCEEEEecCCCCceeEEEe
Confidence            44677777777656666766664

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=2.1e-20  Score=151.49  Aligned_cols=215  Identities=11%  Similarity=0.091  Sum_probs=148.4

Q ss_pred             CceeEEEEcCCCCeEE-EecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           61 NFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      ..+.+++|+|+|++++ +...++.|.+||..+++..............        .........+.|       +|+++
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-------s~dg~  153 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE--------EVRPLQPRELVA-------DDATN  153 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS--------SCCCCEEEEEEE-------ETTTT
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc--------ccCCCCCceEEE-------CCCCC
Confidence            4478899999999554 5566899999999876543222111000000        000011344444       78888


Q ss_pred             EEEEEe--CCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeec
Q 022019          140 VFASTT--RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (304)
Q Consensus       140 ~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~  216 (304)
                      .+++++  .++.|.+||+.+++....+.....     .+.+++|+|+++.++++ .++.|.+||+.+..    .......
T Consensus       154 ~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~----~~~~~~~  224 (353)
T 3vgz_A          154 TVYISGIGKESVIWVVDGGNIKLKTAIQNTGK-----MSTGLALDSEGKRLYTTNADGELITIDTADNK----ILSRKKL  224 (353)
T ss_dssp             EEEEEEESSSCEEEEEETTTTEEEEEECCCCT-----TCCCCEEETTTTEEEEECTTSEEEEEETTTTE----EEEEEEC
T ss_pred             EEEEEecCCCceEEEEcCCCCceEEEecCCCC-----ccceEEECCCCCEEEEEcCCCeEEEEECCCCe----EEEEEEc
Confidence            777765  478899999999988877763332     56789999999998865 89999999997641    1222222


Q ss_pred             cccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       217 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      ...++...+..++|+|++..++++...++.|.+||+.+++.+..+.....  ..++|+|+|+++++++..++.|.+||+.
T Consensus       225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~  302 (353)
T 3vgz_A          225 LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAK  302 (353)
T ss_dssp             CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECC
Confidence            12234556788999995554555555569999999999998888775432  5799999999777666478999999999


Q ss_pred             cceee
Q 022019          297 KAVQV  301 (304)
Q Consensus       297 ~~~~~  301 (304)
                      +++.+
T Consensus       303 ~~~~~  307 (353)
T 3vgz_A          303 SYKVV  307 (353)
T ss_dssp             TTEEE
T ss_pred             CCeEE
Confidence            88654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=2.6e-20  Score=150.89  Aligned_cols=209  Identities=9%  Similarity=0.064  Sum_probs=151.0

Q ss_pred             CCCceeEEEEcCCCCeEEEecC-------CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSE-------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~-------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      ....+..++|+|+|+++++++.       ++.|.+||..+++.....                  .....       |..
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~------------------~~~~~-------~~~   93 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAI------------------HNDLK-------PFG   93 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEE------------------EESSC-------CCS
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEE------------------ecCCC-------cce
Confidence            3456889999999998887764       568999999865432111                  11122       334


Q ss_pred             ceeCCCccEEE-EEeCCCCEEEEEcCCCeeeEEeecccccc----cccceEEEEECCCCcEEEEE---cCCeEEEEEcCC
Q 022019          132 SASDPTSCVFA-STTRDHPIHLWDATTGLLRCTYRAYDAVD----EITAAFSVAFNPTGTKIFAG---YNKSVRVFDVHR  203 (304)
Q Consensus       132 ~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~---~d~~i~v~d~~~  203 (304)
                      ++++|+++.++ +...++.|.+||+.+++....+.......    ....+.++.|+|+++.++++   .++.|.+||+.+
T Consensus        94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~  173 (353)
T 3vgz_A           94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN  173 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred             EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence            45588888554 45567999999999998877776543211    01136789999999988743   378899999976


Q ss_pred             CCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc----ccCCeEEEEECCCCcE
Q 022019          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG----QEGGVTHVQFSRDGNY  279 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~  279 (304)
                      ..    ....+    ..+...+.+++|+| ++..+++++.++.|.+||+.+++.+..+..    +...+..++|+|+|++
T Consensus       174 ~~----~~~~~----~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  244 (353)
T 3vgz_A          174 IK----LKTAI----QNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQR  244 (353)
T ss_dssp             TE----EEEEE----CCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTE
T ss_pred             Cc----eEEEe----cCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCE
Confidence            31    11211    22233477899999 667888888899999999999998877764    4556889999999998


Q ss_pred             EEEeeccCCeEEEEecccceee
Q 022019          280 LYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       280 l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      |++++..++.|.+||+.+++.+
T Consensus       245 l~~~~~~~~~v~~~d~~~~~~~  266 (353)
T 3vgz_A          245 AFITDSKAAEVLVVDTRNGNIL  266 (353)
T ss_dssp             EEEEESSSSEEEEEETTTCCEE
T ss_pred             EEEEeCCCCEEEEEECCCCcEE
Confidence            8887745699999999888654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=3.4e-20  Score=149.57  Aligned_cols=206  Identities=10%  Similarity=0.163  Sum_probs=136.8

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCC-CeEEEeeCC--CCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSED-KTLRIFSLP--ENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~d-g~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .|...+.+++|+|+|++|++++.+ +.|.+|++.  ++...                ..........+..+       ++
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~-------~~   91 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT----------------FAAESALPGSLTHI-------ST   91 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE----------------EEEEEECSSCCSEE-------EE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee----------------eccccccCCCCcEE-------EE
Confidence            467789999999999988888876 999999987  22110                00111111233344       45


Q ss_pred             CCCccEEEEEeC-CCCEEEEEcCCCe---eeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccc
Q 022019          135 DPTSCVFASTTR-DHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       135 ~~~~~~l~~~~~-dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~  208 (304)
                      +|+++++++++. ++.|.+||+..+.   ....+...      ..+.+++|+|++++++ ++ .++.|++||+...+.. 
T Consensus        92 s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~-  164 (343)
T 1ri6_A           92 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL------DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL-  164 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC------TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE-
T ss_pred             cCCCCEEEEEecCCCeEEEEECCCCccccccccccCC------CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce-
Confidence            889998776664 8889999995333   33333222      1578899999999888 45 8999999999762221 


Q ss_pred             eeee--eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC--ceE--eEEec----cc--cCCeEEEEECCC
Q 022019          209 EKYS--TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--MEL--LYVLH----GQ--EGGVTHVQFSRD  276 (304)
Q Consensus       209 ~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--~~~--~~~~~----~~--~~~v~~~~~~~~  276 (304)
                      ....  ...   ......+..++|+|++..+++++..++.|.+||+..  ++.  ...+.    ++  ...+..++|+|+
T Consensus       165 ~~~~~~~~~---~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d  241 (343)
T 1ri6_A          165 VAQDPAEVT---TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD  241 (343)
T ss_dssp             EEEEEEEEE---CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred             eeecccccc---cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence            1111  111   112345788999995444555555889999999953  322  22222    11  235778999999


Q ss_pred             CcEEEEeeccCCeEEEEecc
Q 022019          277 GNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       277 ~~~l~~~~~~d~~i~vwd~~  296 (304)
                      |++|++++..++.|.+|++.
T Consensus       242 g~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          242 GRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEecCCCEEEEEEEc
Confidence            99888555479999999998

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=3.2e-20  Score=149.19  Aligned_cols=227  Identities=10%  Similarity=0.160  Sum_probs=145.3

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCC---eEEEeeCCCCCCccccccccccccCCccc
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK---TLRIFSLPENGISYDVNACSLAKDQDSYE  111 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  111 (304)
                      .+..|+.......     ...+..+..+..+++|+|+|++|+++..++   .|.+||+.+++...               
T Consensus        63 ~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~---------------  122 (331)
T 3u4y_A           63 TLVQIETQLEPPK-----VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS---------------  122 (331)
T ss_dssp             EEEEEECSSSSCE-----EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE---------------
T ss_pred             eEEEEECCCCcee-----EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE---------------
Confidence            3455565544331     224555666666699999999999655553   89999998654321               


Q ss_pred             eEEEeecCCeEEEEeecCccceeCCCccEEE-EEeCCCC-EEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE
Q 022019          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFA-STTRDHP-IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (304)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  189 (304)
                         ..........++|       +|+|++++ +...++. |.+|++.......... .........+..++|+|+|++++
T Consensus       123 ---~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~spdg~~l~  191 (331)
T 3u4y_A          123 ---TIPIPYDAVGIAI-------SPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QEFISGGTRPFNITFTPDGNFAF  191 (331)
T ss_dssp             ---EEECCTTEEEEEE-------CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EEEECSSSSEEEEEECTTSSEEE
T ss_pred             ---EEECCCCccceEE-------CCCCCEEEEEecCCCceEEEEEECCCCcEeecC-CccccCCCCccceEECCCCCEEE
Confidence               1122233455555       88997554 4456688 9999998543322111 11001122578999999999776


Q ss_pred             -EE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEE-EEEecCCeEEEEecCCceE--eEEeccc
Q 022019          190 -AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML-AIGSYSQTSAIYREDNMEL--LYVLHGQ  264 (304)
Q Consensus       190 -~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~i~d~~~~~~--~~~~~~~  264 (304)
                       ++ .++.|++||+..... ......+.     ....+..++|+| +++++ ++...++.|.+||+.+++.  +..+..+
T Consensus       192 v~~~~~~~v~v~d~~~~~~-~~~~~~~~-----~~~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~  264 (331)
T 3u4y_A          192 VANLIGNSIGILETQNPEN-ITLLNAVG-----TNNLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG  264 (331)
T ss_dssp             EEETTTTEEEEEECSSTTS-CEEEEEEE-----CSSCCCCEEECT-TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC
T ss_pred             EEeCCCCeEEEEECCCCcc-cceeeecc-----CCCCCceEEECC-CCCEEEEEEcCCCEEEEEECCCCceeeecccccc
Confidence             55 789999999976422 11122221     124567899999 55544 4445578899999998876  4443322


Q ss_pred             ----cC---CeEEEEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          265 ----EG---GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       265 ----~~---~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                          ..   ....++|+|+|++|++++..++.|.+||+....
T Consensus       265 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          265 LLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             CCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             cccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence                22   235689999999987776467799999998754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=6.1e-21  Score=169.59  Aligned_cols=218  Identities=14%  Similarity=0.120  Sum_probs=146.1

Q ss_pred             CCceeEEEEcCCCCeEEEecC-CC-----eEEEeeCCCCCCccccccccccccCC-------ccceEEEeecCCeEEEEe
Q 022019           60 NNFLKGIKWSPDGSSFLTSSE-DK-----TLRIFSLPENGISYDVNACSLAKDQD-------SYEASLVVTEGESVYDFC  126 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~-dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~  126 (304)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++............+..       .............+..  
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--  113 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD--  113 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC--
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce--
Confidence            456999999999999999998 88     89999998775432221111000000       0000000000011333  


Q ss_pred             ecCccceeCCCccEEEEEeCCCCEEEEEcCCC---eeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCC
Q 022019          127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTG---LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR  203 (304)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~  203 (304)
                           .+|+|||++|++++. +.|++||+.++   ... .+..+.     ..+..++|+|||++|+.+.++.|++||+..
T Consensus       114 -----~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l~~~~-----~~~~~~~~SPDG~~la~~~~~~i~~~d~~~  181 (741)
T 2ecf_A          114 -----YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR-QLTHGE-----GFATDAKLSPKGGFVSFIRGRNLWVIDLAS  181 (741)
T ss_dssp             -----CEECTTSSEEEEEET-TEEEEEESSSCSTTSCC-BCCCSS-----SCEEEEEECTTSSEEEEEETTEEEEEETTT
T ss_pred             -----eEECCCCCEEEEEeC-CcEEEEECCCCCcceEE-EcccCC-----cccccccCCCCCCEEEEEeCCcEEEEecCC
Confidence                 455999999999986 89999999887   433 333332     278899999999999977778999999976


Q ss_pred             CCccceeeeeeecccccccc----------------ceeEEEeecCCCcEEEEEecCC----------------------
Q 022019          204 PGRDFEKYSTLKGNKEGQAG----------------IMSAIAFSPTHTGMLAIGSYSQ----------------------  245 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~----------------~v~~~~~~p~~~~~l~~~~~dg----------------------  245 (304)
                      +. .    ..+.   ..+..                .+.+++|+| +++.|++++.|+                      
T Consensus       182 g~-~----~~~~---~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~  252 (741)
T 2ecf_A          182 GR-Q----MQLT---ADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQR  252 (741)
T ss_dssp             TE-E----EECC---CCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEE
T ss_pred             CC-E----EEec---cCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEee
Confidence            31 1    1111   11111                147899999 666777776665                      


Q ss_pred             -----------eEEEEecCC-ceEeEEec--cccCCeEEEEECCCCcEEEEeec----cCCeEEEEecccceee
Q 022019          246 -----------TSAIYREDN-MELLYVLH--GQEGGVTHVQFSRDGNYLYTGGR----KDPYILCWDLRKAVQV  301 (304)
Q Consensus       246 -----------~i~i~d~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~----~d~~i~vwd~~~~~~~  301 (304)
                                 .|++||+.+ ++......  .|...+.+++| |||++|++++.    .+..|++||+.+++..
T Consensus       253 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~  325 (741)
T 2ecf_A          253 YPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR  325 (741)
T ss_dssp             CCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE
T ss_pred             cCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE
Confidence                       789999988 76554332  46778999999 99999997761    2578999999887643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=2.8e-19  Score=144.68  Aligned_cols=212  Identities=16%  Similarity=0.199  Sum_probs=134.5

Q ss_pred             CCCCceeEEEEcCCCCeEEEecC---CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSE---DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+...+..++|+|+|+ |++++.   ++.|.+|++.++...               .......+..       .|..+++
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~---------------~~~~~~~~~~-------~p~~~a~   93 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH---------------KLNTVVAPGT-------PPAYVAV   93 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE---------------EEEEEEEESC-------CCSEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE---------------EeeeeecCCC-------CCEEEEE
Confidence            3456688899999999 555543   689999998643210               0001111222       3444556


Q ss_pred             CCCccEEEEEe-CCCCEEEEEcC-CCeee--EEeeccccc----ccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCC
Q 022019          135 DPTSCVFASTT-RDHPIHLWDAT-TGLLR--CTYRAYDAV----DEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPG  205 (304)
Q Consensus       135 ~~~~~~l~~~~-~dg~i~i~d~~-~~~~~--~~~~~~~~~----~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~  205 (304)
                      +|+|++|++++ .++.|.+|++. ++...  ..+......    .....+.+++|+|+|++++++ .++.|++||+...+
T Consensus        94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g  173 (347)
T 3hfq_A           94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG  173 (347)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred             CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence            88999888887 67899999996 33322  222211100    011247889999999954455 78899999998422


Q ss_pred             ccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC--ceE--eEEecccc------CCeEEEEECC
Q 022019          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN--MEL--LYVLHGQE------GGVTHVQFSR  275 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--~~~--~~~~~~~~------~~v~~~~~~~  275 (304)
                      . ........   ......+..++|+|++..+++++..++.|.+|++..  ++.  +..+....      ..+..++|+|
T Consensus       174 ~-~~~~~~~~---~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp  249 (347)
T 3hfq_A          174 Q-LSEQSVLT---MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH  249 (347)
T ss_dssp             C-EEEEEEEE---CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred             c-EEEeeeEE---cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence            2 11111111   112234678999995444555567789999999874  442  33333222      3588999999


Q ss_pred             CCcEEEEeeccCCeEEEEecc
Q 022019          276 DGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       276 ~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      ||++|++++..++.|.+|++.
T Consensus       250 dG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          250 DGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             TSCEEEEEEETTTEEEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEEC
Confidence            999886655368999999996

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=5.1e-21  Score=169.63  Aligned_cols=209  Identities=12%  Similarity=0.038  Sum_probs=142.6

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCC---eEEEEeecCccceeCCCc
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE---SVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~  138 (304)
                      .+.+++|+|||+++++ +.||+|++||+.+++.....                 ..+..   .+..++|       ||||
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-----------------~~~~~~~~~v~~~~~-------SpDg   72 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-----------------EGKKIESLRAIRYEI-------SPDR   72 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-----------------CTTTTTTTTCSEEEE-------CTTS
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-----------------ccccccccccceEEE-------CCCC
Confidence            4678999999998776 78999999999866432111                 11111   2445544       8999


Q ss_pred             cEEEEEeCC---------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccce
Q 022019          139 CVFASTTRD---------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       139 ~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~  209 (304)
                      ++|++++.+         +.+++||+.+++. ..+....  .+...+..++|+|||+.|+.+.++.|++||+..+.. ..
T Consensus        73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~--~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~-~~  148 (723)
T 1xfd_A           73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPE--VSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQA-IR  148 (723)
T ss_dssp             SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTT--CCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCC-EE
T ss_pred             CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCc--cccccccccEECCCCCEEEEEECCeEEEEECCCCce-EE
Confidence            999999874         6788999998875 2333221  222247889999999999977678999999976321 11


Q ss_pred             eeeeeecc--cccc---------ccceeEEEeecCCCcEEEEEecCC---------------------------------
Q 022019          210 KYSTLKGN--KEGQ---------AGIMSAIAFSPTHTGMLAIGSYSQ---------------------------------  245 (304)
Q Consensus       210 ~~~~~~~~--~~~~---------~~~v~~~~~~p~~~~~l~~~~~dg---------------------------------  245 (304)
                      ........  ..++         ...+.+++|+| +++.|++++.|+                                 
T Consensus       149 ~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  227 (723)
T 1xfd_A          149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPS  227 (723)
T ss_dssp             EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCE
T ss_pred             EecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCe
Confidence            10000000  0000         01237899999 666777776543                                 


Q ss_pred             -eEEEEecCCceEeEEeccc------cCCeEEEEECCCCcEEEEeec---cCCeEEEEeccccee
Q 022019          246 -TSAIYREDNMELLYVLHGQ------EGGVTHVQFSRDGNYLYTGGR---KDPYILCWDLRKAVQ  300 (304)
Q Consensus       246 -~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~---~d~~i~vwd~~~~~~  300 (304)
                       .|++||+.+++....+..+      ...+.+++|+|||++|++...   .+..|++||+.+++.
T Consensus       228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~  292 (723)
T 1xfd_A          228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC  292 (723)
T ss_dssp             EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred             eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc
Confidence             7999999888765666644      567899999999999877651   235799999988764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=1.2e-19  Score=143.09  Aligned_cols=204  Identities=19%  Similarity=0.235  Sum_probs=138.7

Q ss_pred             ceeeecCCC-cccccccceeeeecCC-CCceeEEEEcCCCCeEEEec--CCCeEEEeeCC--CCCCccccccccccccCC
Q 022019           35 PLIRFDVPP-HRTYHFYNQFRTSSIP-NNFLKGIKWSPDGSSFLTSS--EDKTLRIFSLP--ENGISYDVNACSLAKDQD  108 (304)
Q Consensus        35 ~~~~~~~~~-~~~~~~~~~~~~~~~h-~~~V~~i~~s~~~~~l~s~~--~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~  108 (304)
                      .+..|++.. .....      ...+| ...|.+++|+|+|++|++++  .++...||.++  ++..              
T Consensus        63 ~i~~~d~~~~~~~~~------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~--------------  122 (297)
T 2ojh_A           63 LLYRLSLAGDPSPEK------VDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP--------------  122 (297)
T ss_dssp             EEEEEESSSCCSCEE------CCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC--------------
T ss_pred             eEEEEeCCCCCCceE------eccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce--------------
Confidence            345566555 33222      33344 47899999999999999988  34556666553  2211              


Q ss_pred             ccceEEEeecCCeEEEEeecCccceeCCCccEEE-EEeCCCCEEEEEcC--CCeeeEEeecccccccccceEEEEECCCC
Q 022019          109 SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA-STTRDHPIHLWDAT--TGLLRCTYRAYDAVDEITAAFSVAFNPTG  185 (304)
Q Consensus       109 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~v~~i~~~~~~  185 (304)
                           ........+..++|       +|+++.|+ +++.++.+.+|++.  ++.. ..+..+.     ..+.++.|+|++
T Consensus       123 -----~~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~-----~~~~~~~~s~dg  184 (297)
T 2ojh_A          123 -----RLMTKNLPSYWHGW-------SPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLTHGE-----GRNDGPDYSPDG  184 (297)
T ss_dssp             -----EECCSSSSEEEEEE-------CTTSSEEEEEEEETTEEEEEEEETTTCCE-EECCCSS-----SCEEEEEECTTS
T ss_pred             -----EEeecCCCccceEE-------CCCCCEEEEEECCCCceEEEEEECCCCcc-eEcccCC-----CccccceECCCC
Confidence                 11112233566666       78898777 77789989999864  3333 3333222     278899999999


Q ss_pred             cEEE-EE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC-----------CeEEEEec
Q 022019          186 TKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----------QTSAIYRE  252 (304)
Q Consensus       186 ~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----------g~i~i~d~  252 (304)
                      +.++ ++ .++.+++|++........   .+    ..+...+..++|+| ++.+|++++.+           +.|++||+
T Consensus       185 ~~l~~~~~~~~~~~i~~~~~~~~~~~---~~----~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~  256 (297)
T 2ojh_A          185 RWIYFNSSRTGQMQIWRVRVDGSSVE---RI----TDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMDM  256 (297)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSSCEE---EC----CCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred             CEEEEEecCCCCccEEEECCCCCCcE---EE----ecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence            9888 45 589999999874332221   11    34456788999999 66677776655           56999999


Q ss_pred             CCceE--eEEeccccCCeEEEEECCCCcEEEEee
Q 022019          253 DNMEL--LYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       253 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      .+++.  +..+.+|...+.+++|+|+|++|++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  290 (297)
T 2ojh_A          257 DGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVR  290 (297)
T ss_dssp             TSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred             CCCCceeeeccCCCCcccccceECCCCCEEEEEE
Confidence            88754  445557888899999999999999888

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=4.7e-19  Score=143.26  Aligned_cols=232  Identities=13%  Similarity=0.113  Sum_probs=147.3

Q ss_pred             ceeeecCCCcccccccceeeeecCCC-CceeEEEEcCCCCeE-EEecCCCeEEEeeCCCCCCccccccccccccCCccce
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPN-NFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~i~~s~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (304)
                      .+..|+........      .+..+. ..+..++|+|+|+++ +++..++.|.+||+.+++......             
T Consensus        22 ~v~~~d~~~~~~~~------~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~-------------   82 (349)
T 1jmx_B           22 NLHVVDVASDTVYK------SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN-------------   82 (349)
T ss_dssp             EEEEEETTTTEEEE------EEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-------------
T ss_pred             eEEEEECCCCcEEE------EEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE-------------
Confidence            35566766554332      232222 257899999999865 455678999999998654321111             


Q ss_pred             EEEeecCCeEEEEeecCccceeCCCccEEEEEeCC------------CCEEEEEcCCCeeeEEeecccccccccceEEEE
Q 022019          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA  180 (304)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~  180 (304)
                         ..+....  ....|..++++|+|+++++++.+            +.|.+||+.+++.........   ....+.+++
T Consensus        83 ---~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~  154 (349)
T 1jmx_B           83 ---LSSVPGE--VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP---MPRQVYLMR  154 (349)
T ss_dssp             ---SCCSTTE--EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE---CCSSCCCEE
T ss_pred             ---ccccccc--ccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc---CCCccccee
Confidence               0000000  01124445669999999998865            899999998754332221111   112577899


Q ss_pred             ECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeee-------------------------------cc------------
Q 022019          181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK-------------------------------GN------------  217 (304)
Q Consensus       181 ~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~-------------------------------~~------------  217 (304)
                      |+|+++ ++++ ++.|++||+.+... ...+....                               ..            
T Consensus       155 ~s~dg~-l~~~-~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  231 (349)
T 1jmx_B          155 AADDGS-LYVA-GPDIYKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  231 (349)
T ss_dssp             ECTTSC-EEEE-SSSEEEECTTTCCE-EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             ECCCCc-EEEc-cCcEEEEeCCCCce-eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence            999999 5544 33499999876421 11100000                               00            


Q ss_pred             ------------------ccccccceeEEEeec-CCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCc
Q 022019          218 ------------------KEGQAGIMSAIAFSP-THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN  278 (304)
Q Consensus       218 ------------------~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  278 (304)
                                        ...+...+.+++|+| ++. +++++  ++.|.+||+.+++.+..+.. ...+.+++|+|+|+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~-~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~  307 (349)
T 1jmx_B          232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGD  307 (349)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSS
T ss_pred             ceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC-EEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCC
Confidence                              000111355677888 655 55555  78999999999998887763 34578999999999


Q ss_pred             EEEEeeccCCeEEEEecccceee
Q 022019          279 YLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       279 ~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +|++++ .++.|.+||+++++.+
T Consensus       308 ~l~~~~-~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          308 KLYLGG-TFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             CEEEES-BSSEEEEEETTTTEEE
T ss_pred             EEEEec-CCCeEEEEecccccee
Confidence            999887 8999999999988754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=6.5e-20  Score=163.00  Aligned_cols=199  Identities=11%  Similarity=0.130  Sum_probs=140.3

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCC---CCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN---GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      .|.+++|||||++|++++. +.|.+||+.++   ...                  ....+...+..++|       +|||
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~------------------~l~~~~~~~~~~~~-------SPDG  163 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR------------------QLTHGEGFATDAKL-------SPKG  163 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC------------------BCCCSSSCEEEEEE-------CTTS
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE------------------EcccCCcccccccC-------CCCC
Confidence            4899999999999999886 89999999865   221                  11122355677776       8899


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccc-----------cccceEEEEECCCCcEEEEE-cCC------------
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD-----------EITAAFSVAFNPTGTKIFAG-YNK------------  194 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----------~~~~v~~i~~~~~~~~l~~~-~d~------------  194 (304)
                      ++|++++. +.|++||+.+++............           ....+.++.|+|||++|+.+ .|+            
T Consensus       164 ~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~  242 (741)
T 2ecf_A          164 GFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVY  242 (741)
T ss_dssp             SEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEEC
T ss_pred             CEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCC
Confidence            99999874 589999999887654433221100           00114789999999998844 544            


Q ss_pred             ---------------------eEEEEEcCC-CCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec-----CCeE
Q 022019          195 ---------------------SVRVFDVHR-PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-----SQTS  247 (304)
Q Consensus       195 ---------------------~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----dg~i  247 (304)
                                           .|++||+.. ...  .   .+. ....+...+..++| | ++..|++++.     +..|
T Consensus       243 p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~--~---~~~-~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i  314 (741)
T 2ecf_A          243 ADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT--Q---WID-LGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDL  314 (741)
T ss_dssp             SSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC--E---EEC-CCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEE
T ss_pred             CCcccceEeecCCCCCCCCeeEEEEEECCCCCce--E---Eec-CCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEE
Confidence                                 788888865 421  1   111 01245677899999 9 5666665543     5679


Q ss_pred             EEEecCCceEeEEeccccC----CeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          248 AIYREDNMELLYVLHGQEG----GVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       248 ~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      ++||+.+++....+..+..    .+.+++|+|||+++++++ .||.+.||.+.
T Consensus       315 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~-~~g~~~l~~~~  366 (741)
T 2ecf_A          315 VEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSE-RTGFQHLYRID  366 (741)
T ss_dssp             EEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEEC-TTSSCEEEEEC
T ss_pred             EEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEec-CCCccEEEEEc
Confidence            9999999887777665543    356899999999888888 89988888765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.84  E-value=1.9e-19  Score=159.61  Aligned_cols=228  Identities=10%  Similarity=0.013  Sum_probs=145.6

Q ss_pred             ceeeecCCCcccccccceeeeecCCCC---ceeEEEEcCCCCeEEEecCC---------CeEEEeeCCCCCCcccccccc
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNN---FLKGIKWSPDGSSFLTSSED---------KTLRIFSLPENGISYDVNACS  102 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~i~~s~~~~~l~s~~~d---------g~v~vwd~~~~~~~~~~~~~~  102 (304)
                      .+..|+........      .+.+|..   .|.+++|||||++|++++.+         +.+.+||+.++... .+... 
T Consensus        38 ~i~~~d~~~g~~~~------~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-  109 (723)
T 1xfd_A           38 TVRLWNVETNTSTV------LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPP-  109 (723)
T ss_dssp             CEEEBCGGGCCCEE------EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCT-
T ss_pred             CEEEEECCCCcEEE------EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-eccCC-
Confidence            35566665543322      4455654   49999999999999998764         78889999876431 11000 


Q ss_pred             ccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccc----c------
Q 022019          103 LAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD----E------  172 (304)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~------  172 (304)
                                   ..+...+..+       +|||||+.|++++. +.|++||+.+++.......+....    .      
T Consensus       110 -------------~~~~~~~~~~-------~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~  168 (723)
T 1xfd_A          110 -------------EVSNAKLQYA-------GWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE  168 (723)
T ss_dssp             -------------TCCSCCCSBC-------CBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred             -------------cccccccccc-------EECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence                         0011123344       44899999999886 789999999887665444322100    0      


Q ss_pred             ---ccceEEEEECCCCcEEEE-EcCC----------------------------------eEEEEEcCCCCccceeeeee
Q 022019          173 ---ITAAFSVAFNPTGTKIFA-GYNK----------------------------------SVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       173 ---~~~v~~i~~~~~~~~l~~-~~d~----------------------------------~i~v~d~~~~~~~~~~~~~~  214 (304)
                         ...+.+++|+|||+.|+. +.++                                  .|++||+..... ...+.. 
T Consensus       169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-~~~l~~-  246 (723)
T 1xfd_A          169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-DLEMMP-  246 (723)
T ss_dssp             HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-CEECCC-
T ss_pred             EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-eEEeeC-
Confidence               012378999999999984 3332                                  788999876421 111110 


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecC----CeEEEEecCCceEeEEecc-ccCCe----EEEEECCCCcEEEEe-e
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYS----QTSAIYREDNMELLYVLHG-QEGGV----THVQFSRDGNYLYTG-G  284 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~-~~~~v----~~~~~~~~~~~l~~~-~  284 (304)
                      ......+...+..++|+| +++++++.+..    ..|++||+.++++...+.. +...+    ..++|+|||++|+.. +
T Consensus       247 ~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  325 (723)
T 1xfd_A          247 PDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA  325 (723)
T ss_dssp             CCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred             CccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe
Confidence            001112356688999999 66677666543    5799999998887666543 33444    378999999987754 3


Q ss_pred             ccCC------eEEEEe
Q 022019          285 RKDP------YILCWD  294 (304)
Q Consensus       285 ~~d~------~i~vwd  294 (304)
                      ..++      .|.+||
T Consensus       326 ~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          326 IPQGGRGKFYHITVSS  341 (723)
T ss_dssp             ECCSSSSCEEEEEEEC
T ss_pred             cccCCCcceeEEEEEe
Confidence            2667      577777

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=7.1e-19  Score=155.51  Aligned_cols=206  Identities=17%  Similarity=0.203  Sum_probs=139.3

Q ss_pred             eeEEEEcCCCCeEEEec---------------------------------CCCeEEEeeCCCCCCccccccccccccCCc
Q 022019           63 LKGIKWSPDGSSFLTSS---------------------------------EDKTLRIFSLPENGISYDVNACSLAKDQDS  109 (304)
Q Consensus        63 V~~i~~s~~~~~l~s~~---------------------------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  109 (304)
                      +.++.|+|||++|++++                                 .+..|.+||+.++......           
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~-----------  251 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ-----------  251 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC-----------
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec-----------
Confidence            58999999999999987                                 4467999998765321100           


Q ss_pred             cceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCC-----CEEEEEcCCCeeeEEeecccccccccceEEEEECC-
Q 022019          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH-----PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-  183 (304)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-  183 (304)
                          ....+...+..++|       +|+|+.|++++.++     .|++||+.+++....+...........+.++.|+| 
T Consensus       252 ----~~~~~~~~~~~~~~-------spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~  320 (706)
T 2z3z_A          252 ----TGEPKEKFLTNLSW-------SPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPG  320 (706)
T ss_dssp             ----CCSCTTCEEEEEEE-------CTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             ----cCCCCceeEeeEEE-------ECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecC
Confidence                00123356777777       88999999887775     89999999983333332111111111246789999 


Q ss_pred             -CCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeE-EEeecCCCcEEEEEecCC----eEEEEecCCce
Q 022019          184 -TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA-IAFSPTHTGMLAIGSYSQ----TSAIYREDNME  256 (304)
Q Consensus       184 -~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~~dg----~i~i~d~~~~~  256 (304)
                       +|++++++ .++.++||++...+...   ..+    ..+...+.. ++|+|++..++++++.++    .|..||+.+++
T Consensus       321 ~dg~~l~~~~~~g~~~l~~~~~~~~~~---~~l----~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          321 SNNQFIWQSRRDGWNHLYLYDTTGRLI---RQV----TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             CSSEEEEEECTTSSCEEEEEETTSCEE---EEC----CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             CCCEEEEEEccCCccEEEEEECCCCEE---Eec----CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence             99988866 88889999886322211   222    334455665 799995555556666665    67777877665


Q ss_pred             EeEEeccccCCeEEEEECCCCcEEEEeeccC---CeEEEEecccce
Q 022019          257 LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD---PYILCWDLRKAV  299 (304)
Q Consensus       257 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d---~~i~vwd~~~~~  299 (304)
                       ...+. |...+.+++|+|||++|+.++..+   +.|.+||+.+++
T Consensus       394 -~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          394 -TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             -CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             -ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence             34444 667799999999999988775222   569999998875

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=5.2e-19  Score=156.35  Aligned_cols=240  Identities=14%  Similarity=0.128  Sum_probs=152.9

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCC-----CCCccccccccccccCCc
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPE-----NGISYDVNACSLAKDQDS  109 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~-----~~~~~~~~~~~~~~~~~~  109 (304)
                      .+..|++.....       ..+..+...+.+++|+|||++|+++ .|+.|.+||+.+     ++............  ..
T Consensus       102 ~i~~~d~~~~~~-------~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~--~~  171 (706)
T 2z3z_A          102 GLVGFDMLARKV-------TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL--VY  171 (706)
T ss_dssp             EEEEEETTTTEE-------EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE--EE
T ss_pred             EEEEEECCCCce-------EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe--Ec
Confidence            445566554432       2344567789999999999999985 679999999986     43321110000000  00


Q ss_pred             cceEEEeecCCeEEEEeecCccceeCCCccEEEEEe---------------------------------CCCCEEEEEcC
Q 022019          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT---------------------------------RDHPIHLWDAT  156 (304)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~  156 (304)
                      ... ....+...+..+.       |+|||++|++++                                 .+..|++||+.
T Consensus       172 g~~-~~~ee~~~~~~~~-------~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~  243 (706)
T 2z3z_A          172 GQA-VHQREFGIEKGTF-------WSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA  243 (706)
T ss_dssp             SSC-CGGGCTTCCCSEE-------ECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT
T ss_pred             ccc-hhhhhcCCCceEE-------ECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC
Confidence            000 0000001123444       489999999987                                 44679999999


Q ss_pred             CCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCC-----eEEEEEcCCCCccceeeeeeeccccccccceeEEEe
Q 022019          157 TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNK-----SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF  230 (304)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~-----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  230 (304)
                      +++........   .+...+.+++|+|+|+.|++ +.++     .|++||+.++.. ...+..  .........+.+++|
T Consensus       244 ~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~~~~--~~~~~~~~~~~~~~~  317 (706)
T 2z3z_A          244 TGKTVYLQTGE---PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF-VRTLFV--ETDKHYVEPLHPLTF  317 (706)
T ss_dssp             TTEEEECCCCS---CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-EEEEEE--EECSSCCCCCSCCEE
T ss_pred             CCceEeeccCC---CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-eeEEEE--ccCCCeECccCCcee
Confidence            88765433211   12237889999999998885 4554     899999976411 111111  000111123467899


Q ss_pred             ec--CCCcEEEEEecCCeEEEEecC-CceEeEEeccccCCeEE-EEECCCCcEEEEeeccCC----eEEEEecccce
Q 022019          231 SP--THTGMLAIGSYSQTSAIYRED-NMELLYVLHGQEGGVTH-VQFSRDGNYLYTGGRKDP----YILCWDLRKAV  299 (304)
Q Consensus       231 ~p--~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~~d~----~i~vwd~~~~~  299 (304)
                      +|  ++ .++++++.||.++||++. .+..+..+..+...+.. ++|+|+|+.|+.++..++    .|..||+.+++
T Consensus       318 sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          318 LPGSNN-QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             CTTCSS-EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             ecCCCC-EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            99  65 488888899999999876 56777788878777877 799999998877663554    67777776654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=4.7e-20  Score=163.32  Aligned_cols=203  Identities=10%  Similarity=0.091  Sum_probs=134.9

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCC---eEEEEeecCccceeCCCccEE
Q 022019           65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE---SVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        65 ~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      +++|+|+|+++++ +.|++|++||+.+++....                 ...+..   .+..++|       ||||++|
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~-----------------~~~~~~~~~~~~~~~~-------SpDg~~l   74 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTI-----------------LSNRTMKSVNASNYGL-------SPDRQFV   74 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEE-----------------ECHHHHHTTTCSEEEE-------CTTSSEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEE-----------------EccccccccceeeEEE-------CCCCCeE
Confidence            6899999966555 4699999999986643211                 111111   2445555       8999999


Q ss_pred             EEEeC---------CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeee
Q 022019          142 ASTTR---------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       142 ~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~  212 (304)
                      ++++.         ++.|++||+.+++........      ..+..++|+|||+.|+.+.++.|++||+..+.. .....
T Consensus        75 a~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~------~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~-~~l~~  147 (719)
T 1z68_A           75 YLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP------RPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPP-FQITF  147 (719)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC------SSBCCEEECSSTTCEEEEETTEEEEESSTTSCC-EECCC
T ss_pred             EEEecCceeEEeecceEEEEEECCCCccccceecC------cccccceECCCCCEEEEEECCeEEEEeCCCCCc-EEEec
Confidence            98876         789999999988762111111      167789999999999977899999999976422 11000


Q ss_pred             eeec--ccccccc---------ceeEEEeecCCCcEEEEEecCC----------------------------------eE
Q 022019          213 TLKG--NKEGQAG---------IMSAIAFSPTHTGMLAIGSYSQ----------------------------------TS  247 (304)
Q Consensus       213 ~~~~--~~~~~~~---------~v~~~~~~p~~~~~l~~~~~dg----------------------------------~i  247 (304)
                      .-..  ...++..         ...+++|+| +++.|++++.|.                                  .|
T Consensus       148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l  226 (719)
T 1z68_A          148 NGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI  226 (719)
T ss_dssp             CCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred             CCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence            0000  0011111         125899999 677788777552                                  78


Q ss_pred             EEEecCCceEe--------EEeccccCCeEEEEECCCCcEEEEeec-cC--CeEEEEe----ccccee
Q 022019          248 AIYREDNMELL--------YVLHGQEGGVTHVQFSRDGNYLYTGGR-KD--PYILCWD----LRKAVQ  300 (304)
Q Consensus       248 ~i~d~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~-~d--~~i~vwd----~~~~~~  300 (304)
                      ++||+.+++..        ..+.+|...+.+++|+||++++++... .+  ..|.+||    +.+++.
T Consensus       227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~  294 (719)
T 1z68_A          227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC  294 (719)
T ss_dssp             EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC
T ss_pred             EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce
Confidence            89999887642        123467788999999999887776441 12  3588899    766654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=1.3e-17  Score=135.73  Aligned_cols=214  Identities=12%  Similarity=0.130  Sum_probs=134.5

Q ss_pred             CCCceeEEEEcCCCCeEEEecCC----CeEEEeeCCCCCCccccccccccccCCccceEEEee-cCCeEEEEeecCccce
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSED----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EGESVYDFCWFPHMSA  133 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  133 (304)
                      |...+..++|+|+|++|++++.+    +.|.+|++....-.              ........ +......+       +
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~--------------~~~~~~~~~~~~~p~~~-------~  106 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT--------------LHLLNTQKTMGADPCYL-------T  106 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE--------------EEEEEEEECSSSCEEEE-------E
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc--------------EEEeeEeccCCCCcEEE-------E
Confidence            67778899999999999998875    79999998642100              00000111 12223333       3


Q ss_pred             eCCCccEEEEEe-CCCCEEEEEcCCCeeeEEe----ecccc-----cccccceEEEEECCCCcEEE-EE-cCCeEEEEEc
Q 022019          134 SDPTSCVFASTT-RDHPIHLWDATTGLLRCTY----RAYDA-----VDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDV  201 (304)
Q Consensus       134 ~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~----~~~~~-----~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~  201 (304)
                      +  +++++++++ .++.|.+|++.........    .....     ......+.+++|+|+|++++ ++ .++.|.+|++
T Consensus       107 ~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~  184 (361)
T 3scy_A          107 T--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNI  184 (361)
T ss_dssp             E--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             E--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEE
Confidence            3  666666665 6789999999754322111    11100     01122457899999999777 45 6899999999


Q ss_pred             CCCCc----c-ceeeeeeeccccccccceeEEEeecCCCcEEEEEe-cCCeEEEEecCCceE--eEEec---cccCCeEE
Q 022019          202 HRPGR----D-FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNMEL--LYVLH---GQEGGVTH  270 (304)
Q Consensus       202 ~~~~~----~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~---~~~~~v~~  270 (304)
                      .....    . +................+..++|+| +++++++++ .++.|.+||+.+++.  +..+.   .+......
T Consensus       185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~  263 (361)
T 3scy_A          185 NPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGD  263 (361)
T ss_dssp             CTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEE
T ss_pred             cCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCccc
Confidence            76432    1 2111000000122234468899999 565565555 689999999987653  33332   33345789


Q ss_pred             EEECCCCcEEEEeecc-CCeEEEEecc
Q 022019          271 VQFSRDGNYLYTGGRK-DPYILCWDLR  296 (304)
Q Consensus       271 ~~~~~~~~~l~~~~~~-d~~i~vwd~~  296 (304)
                      ++|+|||++|+++... ++.|.+|++.
T Consensus       264 i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          264 IHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             EEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            9999999999887734 5899999996

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.83  E-value=3.4e-19  Score=154.14  Aligned_cols=196  Identities=13%  Similarity=0.061  Sum_probs=134.1

Q ss_pred             CCceeEEEEcCCCCeEEEecC-CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      ..+|.+++|+|||++||+++. ||+++||++.++...                 .+...+...+..+.|       +|+ 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-----------------~lt~~~~~~~~~~~~-------spd-   75 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-----------------KLNREPINSVLDPHY-------GVG-   75 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-----------------ECCSSCCSEECEECT-------TCS-
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-----------------eeecccccccccccC-------CCC-
Confidence            557999999999999999887 999999997533210                 011112245666766       777 


Q ss_pred             cEEEEEeC---CCCEEEEEcCC---CeeeEEeecccccccccceEEEEECCCCcE--EEEEcCCeEEEEEcCCCCcccee
Q 022019          139 CVFASTTR---DHPIHLWDATT---GLLRCTYRAYDAVDEITAAFSVAFNPTGTK--IFAGYNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       139 ~~l~~~~~---dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~--l~~~~d~~i~v~d~~~~~~~~~~  210 (304)
                      +++++++.   +....+|.+..   +... .+....      .+...+|+|+++.  ++++.++.+.+||+.++.  .  
T Consensus        76 ~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~--~--  144 (582)
T 3o4h_A           76 RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK------PMRILSGVDTGEAVVFTGATEDRVALYALDGGG--L--  144 (582)
T ss_dssp             EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC------SBEEEEEEECSSCEEEEEECSSCEEEEEEETTE--E--
T ss_pred             eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC------CceeeeeCCCCCeEEEEecCCCCceEEEccCCc--E--
Confidence            67777765   44456655432   2222 232221      2335677777754  334566666799997631  1  


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecC----CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeecc
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS----QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRK  286 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  286 (304)
                       ..+.   . +..  .+++|+| +++.|++++.+    +.|++||+.+++.. .+..|...+..++|+|||++|+++. .
T Consensus       145 -~~l~---~-~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~-~  214 (582)
T 3o4h_A          145 -RELA---R-LPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLE-T  214 (582)
T ss_dssp             -EEEE---E-ESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEE-C
T ss_pred             -EEee---c-CCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEcc-C
Confidence             1111   1 111  7899999 67788877776    77999999887754 6677888899999999999999777 8


Q ss_pred             CC--eEEEEecccceee
Q 022019          287 DP--YILCWDLRKAVQV  301 (304)
Q Consensus       287 d~--~i~vwd~~~~~~~  301 (304)
                      ++  .|++||+.+++..
T Consensus       215 ~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          215 AREARLVTVDPRDGSVE  231 (582)
T ss_dssp             SSCEEEEEECTTTCCEE
T ss_pred             CCeeEEEEEcCCCCcEE
Confidence            88  8999999887653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=3.9e-17  Score=132.83  Aligned_cols=224  Identities=13%  Similarity=0.119  Sum_probs=137.0

Q ss_pred             ecCCCCceeEEEEcCCCCeEEEec-CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           56 SSIPNNFLKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      ...+......+++  ++++|++++ .++.|.+|++......................   ...+...+..+       ++
T Consensus        95 ~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~-------~~  162 (361)
T 3scy_A           95 QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDK---ERQTMPHLHCV-------RI  162 (361)
T ss_dssp             EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCT---TTCSSCCEEEE-------EE
T ss_pred             eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCc---cccCCCcceEE-------EE
Confidence            3345566778888  788777665 58899999997543322211100000000000   00011223444       44


Q ss_pred             CCCccEEEEEe-CCCCEEEEEcCCCee------e------EEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEE
Q 022019          135 DPTSCVFASTT-RDHPIHLWDATTGLL------R------CTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVF  199 (304)
Q Consensus       135 ~~~~~~l~~~~-~dg~i~i~d~~~~~~------~------~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~  199 (304)
                      +|+|+++++++ .++.|.+|++.....      .      ......    ....+..++|+|+|++++ ++ .++.|.+|
T Consensus       163 spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  238 (361)
T 3scy_A          163 TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA----PGSGPRHLIFNSDGKFAYLINEIGGTVIAF  238 (361)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC----TTCCEEEEEECTTSSEEEEEETTTCEEEEE
T ss_pred             CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC----CCCCCeEEEEcCCCCEEEEEcCCCCeEEEE
Confidence            88998666555 578999999875431      1      111111    112567899999999887 45 68999999


Q ss_pred             EcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec--CCeEEEEecC--Cce--EeEEeccccCCeEEEEE
Q 022019          200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--SQTSAIYRED--NME--LLYVLHGQEGGVTHVQF  273 (304)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~i~i~d~~--~~~--~~~~~~~~~~~v~~~~~  273 (304)
                      |+..+  .......... ...+......++|+| ++++|+++..  ++.|.+|++.  +++  .+..+.. ...+.+++|
T Consensus       239 ~~~~g--~~~~~~~~~~-~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~  313 (361)
T 3scy_A          239 RYADG--MLDEIQTVAA-DTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII  313 (361)
T ss_dssp             EEETT--EEEEEEEEES-CSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE
T ss_pred             EecCC--ceEEeEEEec-CCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE
Confidence            99742  1222222221 122334467999999 5656655554  5899999985  333  4555554 456789999


Q ss_pred             CCCCcEEEEeeccCCeEEEEec--cccee
Q 022019          274 SRDGNYLYTGGRKDPYILCWDL--RKAVQ  300 (304)
Q Consensus       274 ~~~~~~l~~~~~~d~~i~vwd~--~~~~~  300 (304)
                      +|+|++|++++..++.|.+|++  .+++.
T Consensus       314 spdg~~l~~~~~~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          314 TPNGKYLLVACRDTNVIQIFERDQATGLL  342 (361)
T ss_dssp             CTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             CCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence            9999999888756789999655  45543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=6.1e-19  Score=162.08  Aligned_cols=195  Identities=13%  Similarity=0.105  Sum_probs=148.3

Q ss_pred             CCCceeEEEEc-CCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCC-eEEEEeecCccceeCC
Q 022019           59 PNNFLKGIKWS-PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE-SVYDFCWFPHMSASDP  136 (304)
Q Consensus        59 h~~~V~~i~~s-~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~  136 (304)
                      |...|.+++|+ |||++|++++ ++.|.+|++.++...                  ....+.. .+..+.|       + 
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~------------------~~~~~~~~~~~~~~~-------s-  346 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL------------------KVPEPLRIRYVRRGG-------D-  346 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE------------------ECSCCSCEEEEEECS-------S-
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE------------------EccCCCcceEEeeeE-------c-
Confidence            44579999999 9999999887 789999998754321                  0111223 5666666       8 


Q ss_pred             CccEEEEEeCCCCEE-EEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeee
Q 022019          137 TSCVFASTTRDHPIH-LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      +|+.|++++.++.+. +||+.+++... +..+.     ..+..++|+|+|++|+.+ .++.|++||+.++..     ..+
T Consensus       347 dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~-----~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~-----~~~  415 (1045)
T 1k32_A          347 TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENL-----GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-----TVI  415 (1045)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCC-----CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----EEE
T ss_pred             CCCeEEEEECCCceEEEEECCCCCceE-ecCCc-----cceeeeEECCCCCEEEEECCCCeEEEEECCCCce-----EEe
Confidence            899999999888888 99998776443 22222     278899999999999954 889999999986321     111


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecCC----------eEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ----------TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                         ..+|...+.+++|+| ++++|++++.++          .|++||+.+++ +..+..|...+..++|+|||++|++++
T Consensus       416 ---~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s  490 (1045)
T 1k32_A          416 ---ERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLS  490 (1045)
T ss_dssp             ---EECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             ---ccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEe
Confidence               134667789999999 666777776644          89999999887 667777888899999999999999999


Q ss_pred             ccCCeEEEEeccc
Q 022019          285 RKDPYILCWDLRK  297 (304)
Q Consensus       285 ~~d~~i~vwd~~~  297 (304)
                       .++...+|+...
T Consensus       491 -~~~~~~~~~~~~  502 (1045)
T 1k32_A          491 -YRSLDPSPDRVV  502 (1045)
T ss_dssp             -SCCCCCEECSSS
T ss_pred             -cccCCcCcchhc
Confidence             788888887643

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=1.9e-17  Score=134.90  Aligned_cols=211  Identities=14%  Similarity=0.186  Sum_probs=136.0

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCC-CCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLP-ENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      +...+..++|+|+|++|++++.+ .|.+|++. +++...                .......       -.|..++++|+
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~----------------~~~~~~~-------g~~~~~~~spd   93 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH----------------EASHPIG-------GHPRANDADTN   93 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE----------------EEEEECC-------SSGGGGCTTSC
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE----------------eeEeecC-------CCCccEEECCC
Confidence            44568899999999999988887 99999985 332100                0000000       12455677999


Q ss_pred             ccE--EEEEe-------------CCCCEEEEEcC-CCeeeEEeecccccccccceEEEEECCCCcEEEEE--cCCeEEEE
Q 022019          138 SCV--FASTT-------------RDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVF  199 (304)
Q Consensus       138 ~~~--l~~~~-------------~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~v~  199 (304)
                      |+.  +++++             .+|.+.+|++. +++....+..... .+...+.+++|+|+|++++++  .++.|++|
T Consensus        94 g~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~  172 (365)
T 1jof_A           94 TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY-QENTGIHGMVFDPTETYLYSADLTANKLWTH  172 (365)
T ss_dssp             CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEe-CCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence            994  44553             68999999997 4655443332100 112368899999999988854  57899999


Q ss_pred             EcC-CCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEe-cCCeEEEEecC--CceEe---EE---ec----ccc
Q 022019          200 DVH-RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYRED--NMELL---YV---LH----GQE  265 (304)
Q Consensus       200 d~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~--~~~~~---~~---~~----~~~  265 (304)
                      |+. .+.  ........  ...+...+..++|+| +++++++++ .++.|.+|++.  +++..   ..   +.    +|.
T Consensus       173 ~~~~~g~--~~~~~~~~--~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~  247 (365)
T 1jof_A          173 RKLASGE--VELVGSVD--APDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD  247 (365)
T ss_dssp             EECTTSC--EEEEEEEE--CSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred             EECCCCC--EEEeeeEe--cCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence            997 321  11111111  011234588999999 566666665 47899999765  45432   12   22    122


Q ss_pred             C------CeEEEE-ECCCCcEEEEeeccCC-----eEEEEecc-cce
Q 022019          266 G------GVTHVQ-FSRDGNYLYTGGRKDP-----YILCWDLR-KAV  299 (304)
Q Consensus       266 ~------~v~~~~-~~~~~~~l~~~~~~d~-----~i~vwd~~-~~~  299 (304)
                      .      .+..++ |+|||++|++++..++     .|.+|++. +++
T Consensus       248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~  294 (365)
T 1jof_A          248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred             cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence            2      488999 9999999987763333     89999996 454

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.81  E-value=1.4e-18  Score=159.79  Aligned_cols=211  Identities=10%  Similarity=0.037  Sum_probs=151.3

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+..|. .+..++|+|||++|+++ .++.|.+|++...... .....      ..........+...+..++|       
T Consensus       240 ~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~------~~~~~~~~~~~~~~v~~~~~-------  303 (1045)
T 1k32_A          240 KHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIG------DLESPEDRIISIPSKFAEDF-------  303 (1045)
T ss_dssp             ECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCC------CCCBCCSEEEECGGGGEEEE-------
T ss_pred             EecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccC------cccccccccccccccceeee-------
Confidence            344444 46778999999999887 4889999998432221 11110      00000111223344555555       


Q ss_pred             C-CCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCCeEE-EEEcCCCCccceee
Q 022019          135 D-PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVR-VFDVHRPGRDFEKY  211 (304)
Q Consensus       135 ~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~-v~d~~~~~~~~~~~  211 (304)
                      + |+|+.+++++ ++.|++|++..+.... +..+..    ..+..++|+ +|+.++. +.++.+. +||+....     .
T Consensus       304 S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~----~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-----~  371 (1045)
T 1k32_A          304 SPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLR----IRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK-----A  371 (1045)
T ss_dssp             EECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSC----EEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-----E
T ss_pred             cCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCc----ceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-----c
Confidence            7 8999998888 7889999998776443 222211    167899999 9998884 4677788 88986531     1


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccC----
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD----  287 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d----  287 (304)
                      ..+    .++...+..++|+| ++..|++++.++.|++||+.+++....+.+|...+.+++|+|||++|++++ .+    
T Consensus       372 ~~l----~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~-~~~~~~  445 (1045)
T 1k32_A          372 EKF----EENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF-PLKHGE  445 (1045)
T ss_dssp             EEC----CCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEE-EECSST
T ss_pred             eEe----cCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEe-cCcccc
Confidence            111    24556789999999 778999999999999999999988877778989999999999999999887 54    


Q ss_pred             ------CeEEEEecccce
Q 022019          288 ------PYILCWDLRKAV  299 (304)
Q Consensus       288 ------~~i~vwd~~~~~  299 (304)
                            +.|++||+.+++
T Consensus       446 ~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          446 TDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             TCSCCEEEEEEEETTTTE
T ss_pred             ccCCCCCeEEEEECCCCc
Confidence                  499999998876

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=1.9e-18  Score=153.33  Aligned_cols=207  Identities=13%  Similarity=0.137  Sum_probs=135.2

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      ...+++|+|||++++++  ||+|++||+.+++.......                 +......+.  ....++||||++|
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~-----------------~~~~~~~~~--~~~~~~Spdg~~l   76 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLEN-----------------STFDEFGHS--INDYSISPDGQFI   76 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECT-----------------TTTTTCCSC--CCEEEECTTSSEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEec-----------------hhhhhhccc--ccceEECCCCCEE
Confidence            46689999999999886  89999999987653211111                 110100000  0012449999999


Q ss_pred             EEEeCC---------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeee
Q 022019          142 ASTTRD---------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       142 ~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~  212 (304)
                      +.++.+         +.+.+||+.+++... +..+.     ..+..++|||||+.|+.+.++.|++||+..+.. . .+.
T Consensus        77 ~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~-----~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~-~-~lt  148 (740)
T 4a5s_A           77 LLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIP-----NNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPS-Y-RIT  148 (740)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCC-----TTEEEEEECSSTTCEEEEETTEEEEESSTTSCC-E-ECC
T ss_pred             EEEECCeeeEEEccceEEEEEECCCCcEEE-cccCC-----CcceeeEECCCCCEEEEEECCeEEEEECCCCce-E-EEc
Confidence            999876         566799999987543 32222     278899999999999977889999999976421 1 100


Q ss_pred             eeec----cccccc---------cceeEEEeecCCCcEEEEEecCC----------------------------------
Q 022019          213 TLKG----NKEGQA---------GIMSAIAFSPTHTGMLAIGSYSQ----------------------------------  245 (304)
Q Consensus       213 ~~~~----~~~~~~---------~~v~~~~~~p~~~~~l~~~~~dg----------------------------------  245 (304)
                       ...    ...++.         +....+.||| +++.|+.++.|.                                  
T Consensus       149 -~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~  226 (740)
T 4a5s_A          149 -WTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNP  226 (740)
T ss_dssp             -SCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCC
T ss_pred             -CCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCC
Confidence             000    001111         1224589999 666677664321                                  


Q ss_pred             --eEEEEecCC---ce--EeEEec------cccCCeEEEEECCCCcEEEEeec---cCCeEEEEecccce
Q 022019          246 --TSAIYREDN---ME--LLYVLH------GQEGGVTHVQFSRDGNYLYTGGR---KDPYILCWDLRKAV  299 (304)
Q Consensus       246 --~i~i~d~~~---~~--~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~---~d~~i~vwd~~~~~  299 (304)
                        .|++||+.+   ++  ....+.      +|...+..++|+|||+.++....   .+..|.+||+.+++
T Consensus       227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          227 TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence              488899888   62  222333      37778999999999997665541   23479999999886

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=1.4e-17  Score=135.75  Aligned_cols=213  Identities=11%  Similarity=0.114  Sum_probs=134.9

Q ss_pred             ceeEEEEcCCCCe--EEEec-------------CCCeEEEeeCCC-CCCccccccccccccCCccceEEEeecCCeEEEE
Q 022019           62 FLKGIKWSPDGSS--FLTSS-------------EDKTLRIFSLPE-NGISYDVNACSLAKDQDSYEASLVVTEGESVYDF  125 (304)
Q Consensus        62 ~V~~i~~s~~~~~--l~s~~-------------~dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  125 (304)
                      .+.+++|+|+|++  ++++.             .+|++.+|++.. ++......             .....+...+..+
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~-------------~~~~~~~~~~~~~  150 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ-------------NYEYQENTGIHGM  150 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE-------------EEECCTTCCEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEe-------------eEEeCCCCcceEE
Confidence            3667999999994  55654             689999999873 22110000             0000123445555


Q ss_pred             eecCccceeCCCccEEEEEeC-CCCEEEEEcC-CCeeeEE--eecccccccccceEEEEECCCCcEEEE-E-cCCeEEEE
Q 022019          126 CWFPHMSASDPTSCVFASTTR-DHPIHLWDAT-TGLLRCT--YRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVF  199 (304)
Q Consensus       126 ~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~-~~~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~v~  199 (304)
                      +|       +|+|++++++.. ++.|++|++. +++....  +....   +...+..++|+|+|+++++ + .++.|.+|
T Consensus       151 ~~-------spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~---~g~~p~~~~~spdg~~l~v~~~~~~~v~v~  220 (365)
T 1jof_A          151 VF-------DPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD---PGDHPRWVAMHPTGNYLYALMEAGNRICEY  220 (365)
T ss_dssp             EE-------CTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS---TTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EE-------CCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC---CCCCCCEeEECCCCCEEEEEECCCCeEEEE
Confidence            55       889998887754 6789999998 6765322  22110   1226789999999999885 4 57899999


Q ss_pred             EcCCCCccce----eeeeeecccccccc------ceeEEE-eecCCCcEEEEEec-CC-----eEEEEecC-CceEeE--
Q 022019          200 DVHRPGRDFE----KYSTLKGNKEGQAG------IMSAIA-FSPTHTGMLAIGSY-SQ-----TSAIYRED-NMELLY--  259 (304)
Q Consensus       200 d~~~~~~~~~----~~~~~~~~~~~~~~------~v~~~~-~~p~~~~~l~~~~~-dg-----~i~i~d~~-~~~~~~--  259 (304)
                      ++........    .+..+.....++..      .+..++ |+| ++++|++++. ++     .|.+|++. +++...  
T Consensus       221 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~  299 (365)
T 1jof_A          221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL  299 (365)
T ss_dssp             EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred             EEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEee
Confidence            8864211111    11111111112222      478899 999 5556665554 33     89999986 555433  


Q ss_pred             -EeccccCCeEEEEECC---CCcEEEEeeccCCeEEEEecccc
Q 022019          260 -VLHGQEGGVTHVQFSR---DGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       260 -~~~~~~~~v~~~~~~~---~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                       .+..+...+..++|+|   ||++|++++..++.|.+|++...
T Consensus       300 ~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence             2333445567889999   89999999834599999998765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.80  E-value=1.4e-17  Score=133.82  Aligned_cols=192  Identities=11%  Similarity=0.115  Sum_probs=128.9

Q ss_pred             CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE-EEEeCCCCEE
Q 022019           73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIH  151 (304)
Q Consensus        73 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~  151 (304)
                      ++|++++.++.|.+||+.+++....                  ......    .+.|..++++|+++.+ +++..++.|.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~------------------~~~~~~----~~~~~~~~~s~dg~~l~v~~~~~~~v~   59 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKV------------------ITIADA----GPTPMVPMVAPGGRIAYATVNKSESLV   59 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEE------------------EECTTC----TTCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEE------------------EEcCCC----CCCccceEEcCCCCEEEEEeCCCCeEE
Confidence            4789999999999999986533211                  111110    0013344558899765 5556678999


Q ss_pred             EEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-------------cCCeEEEEEcCCCCccceeeeeeeccc
Q 022019          152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-------------YNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       152 i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                      +||+.+++....+.......+...+.+++|+|++++++++             .++.|.+||+....    ....+.   
T Consensus        60 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----~~~~~~---  132 (337)
T 1pby_B           60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS----RRKAFE---  132 (337)
T ss_dssp             EEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE----EEEEEE---
T ss_pred             EEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc----EEEEEe---
Confidence            9999999887766543211111245689999999988855             47999999997531    111111   


Q ss_pred             cccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc---------------------------------
Q 022019          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---------------------------------  265 (304)
Q Consensus       219 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------------------------  265 (304)
                        ....+.+++|+| ++.+|+++  ++.|++||+.+++.+..+..+.                                 
T Consensus       133 --~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  207 (337)
T 1pby_B          133 --APRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK  207 (337)
T ss_dssp             --CCSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred             --CCCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccc
Confidence              123467889999 55556655  6889999998887665543221                                 


Q ss_pred             ---------------------------------CCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          266 ---------------------------------GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       266 ---------------------------------~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                                                       ..+.+++|+|+|++|+++   ++.|.+||+.+++.+
T Consensus       208 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~  273 (337)
T 1pby_B          208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASI  273 (337)
T ss_dssp             TSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEE
T ss_pred             ccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEEEECCCCcCc
Confidence                                             134568999999998877   578999999887654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.80  E-value=5.4e-19  Score=156.57  Aligned_cols=231  Identities=13%  Similarity=0.107  Sum_probs=145.9

Q ss_pred             ceeeecCCCcccccccceeeeecCCCC---ceeEEEEcCCCCeEEEecC---------CCeEEEeeCCCCCCcccccccc
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNN---FLKGIKWSPDGSSFLTSSE---------DKTLRIFSLPENGISYDVNACS  102 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~i~~s~~~~~l~s~~~---------dg~v~vwd~~~~~~~~~~~~~~  102 (304)
                      .+..|+........      .+.+|..   .|.+++|||||++|++++.         ++.|++||+.+++......   
T Consensus        37 ~i~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~---  107 (719)
T 1z68_A           37 NIVLYNIETGQSYT------ILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE---  107 (719)
T ss_dssp             CEEEEESSSCCEEE------EECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC---
T ss_pred             CEEEEEcCCCcEEE------EEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee---
Confidence            45566666554332      3333333   4899999999999998876         7899999998764310000   


Q ss_pred             ccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccccc----ccc-----
Q 022019          103 LAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV----DEI-----  173 (304)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~-----  173 (304)
                                 +    ...+..++|       ||||+.|+++. ++.|++||+.+++...........    ++.     
T Consensus       108 -----------l----~~~~~~~~~-------SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~  164 (719)
T 1z68_A          108 -----------L----PRPIQYLCW-------SPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYE  164 (719)
T ss_dssp             -----------C----CSSBCCEEE-------CSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHH
T ss_pred             -----------c----CcccccceE-------CCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceee
Confidence                       0    023444555       88999999986 779999999888764322111100    000     


Q ss_pred             ----cceEEEEECCCCcEEEE-EcCC----------------------------------eEEEEEcCCCCcc-ceeeee
Q 022019          174 ----TAAFSVAFNPTGTKIFA-GYNK----------------------------------SVRVFDVHRPGRD-FEKYST  213 (304)
Q Consensus       174 ----~~v~~i~~~~~~~~l~~-~~d~----------------------------------~i~v~d~~~~~~~-~~~~~~  213 (304)
                          ....+++|+|||+.|+. +.|.                                  .|++||+..+... ...+. 
T Consensus       165 ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~-  243 (719)
T 1z68_A          165 EEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP-  243 (719)
T ss_dssp             HHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC-
T ss_pred             eecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc-
Confidence                11248999999999994 4331                                  7889998753210 00000 


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecC----CeEEEEe----cCCceEeEEe----ccccCCeE-----EEEECCC
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS----QTSAIYR----EDNMELLYVL----HGQEGGVT-----HVQFSRD  276 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~----~~~~~~v~-----~~~~~~~  276 (304)
                      ......++...+..++|+|+ +.++++....    ..|.+||    +.++++...+    .+|...+.     .+.|+||
T Consensus       244 ~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd  322 (719)
T 1z68_A          244 VPAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD  322 (719)
T ss_dssp             CCHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred             CCccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence            00112356777899999995 7777765433    2488999    8787766555    46777776     8999999


Q ss_pred             CcEEEEe-eccCC--eEEEEecccce
Q 022019          277 GNYLYTG-GRKDP--YILCWDLRKAV  299 (304)
Q Consensus       277 ~~~l~~~-~~~d~--~i~vwd~~~~~  299 (304)
                      |+.|+.. +..+|  .|.+||+.+++
T Consensus       323 g~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          323 AISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             SSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             CCeEEEEEEccCCceEEEEEECCCCc
Confidence            9966542 21455  57777776653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=9e-18  Score=135.70  Aligned_cols=201  Identities=12%  Similarity=0.064  Sum_probs=135.0

Q ss_pred             EEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEE-E
Q 022019           65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA-S  143 (304)
Q Consensus        65 ~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-~  143 (304)
                      ++++++++.++++++.++.|.+||+.+++.....                ..  ..     .+.|..++++|+++.++ +
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~----------------~~--~~-----~~~~~~~~~s~dg~~~~v~   60 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSC----------------VM--PD-----KFGPGTAMMAPDNRTAYVL   60 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEE----------------EC--SS-----CCSSCEEEECTTSSEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEE----------------ec--CC-----CCCCceeEECCCCCEEEEE
Confidence            4567888889999999999999999865432111                11  11     01233345588998654 5


Q ss_pred             EeCCCCEEEEEcCCCeeeEEeeccccc-ccccceEEEEECCCCcEEEEE-c------------CCeEEEEEcCCCCccce
Q 022019          144 TTRDHPIHLWDATTGLLRCTYRAYDAV-DEITAAFSVAFNPTGTKIFAG-Y------------NKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       144 ~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~-~------------d~~i~v~d~~~~~~~~~  209 (304)
                      +..++.|.+||+.+++....+...... .....+.+++|+|+|++++++ .            ++.|.+||+.+.. ...
T Consensus        61 ~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~  139 (349)
T 1jmx_B           61 NNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-EAK  139 (349)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-GBC
T ss_pred             eCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc-ccc
Confidence            557899999999999877666543210 001146789999999999965 4            4999999997531 111


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc------------------------
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE------------------------  265 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------------------  265 (304)
                      .....     .+...+.+++|+| ++. +++++  +.|.+||+.+++.+..+..+.                        
T Consensus       140 ~~~~~-----~~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (349)
T 1jmx_B          140 PVRTF-----PMPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF  210 (349)
T ss_dssp             CSEEE-----ECCSSCCCEEECT-TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred             eeeec-----cCCCcccceeECC-CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeE
Confidence            11111     1222478899999 555 44443  449999998887766654321                        


Q ss_pred             --------------------------------------------CCeEEEEECC-CCcEEEEeeccCCeEEEEeccccee
Q 022019          266 --------------------------------------------GGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       266 --------------------------------------------~~v~~~~~~~-~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                                                                  ..+.+++|+| +|++|+++   ++.|.+||+.+++.
T Consensus       211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~  287 (349)
T 1jmx_B          211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKL  287 (349)
T ss_dssp             EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEE
T ss_pred             EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeE
Confidence                                                        1345678889 99999877   67999999998865


Q ss_pred             e
Q 022019          301 V  301 (304)
Q Consensus       301 ~  301 (304)
                      +
T Consensus       288 ~  288 (349)
T 1jmx_B          288 I  288 (349)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.79  E-value=3.6e-16  Score=126.94  Aligned_cols=229  Identities=9%  Similarity=0.078  Sum_probs=137.6

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEec----------CCCeEEEeeCCCCCCccccccccccc
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAK  105 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~~~~  105 (304)
                      ++.||....+..      ..+..+..+  .++|+|||++++++.          .++.|.+||..+.+....+.      
T Consensus        33 v~v~D~~t~~~~------~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~------   98 (361)
T 2oiz_A           33 VHVYDYTNGKFL------GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS------   98 (361)
T ss_dssp             EEEEETTTCCEE------EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE------
T ss_pred             EEEEECCCCeEE------EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE------
Confidence            456665544433      244445555  899999999998876          36789999987654322211      


Q ss_pred             cCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeC--CCCEEEEEcCCCeeeEE-eecccccccccceEEEEEC
Q 022019          106 DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR--DHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFN  182 (304)
Q Consensus       106 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~v~~i~~~  182 (304)
                                .... . ....-.|..++++|+|++|+++..  +++|.+||+.+++.+.. +....       ...+.+.
T Consensus        99 ----------~~~~-~-~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-------~~~v~~~  159 (361)
T 2oiz_A           99 ----------LPPK-R-VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-------CWSVIPQ  159 (361)
T ss_dssp             ----------ECTT-B-CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-------EEEEEEC
T ss_pred             ----------cCcc-c-cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-------cceeEEc
Confidence                      1000 0 000113566778999999998874  57899999999987766 44322       1123334


Q ss_pred             CCC-cEEE-EEcCCeEEEEEcCCCCccc----------------------------------------------eeeeee
Q 022019          183 PTG-TKIF-AGYNKSVRVFDVHRPGRDF----------------------------------------------EKYSTL  214 (304)
Q Consensus       183 ~~~-~~l~-~~~d~~i~v~d~~~~~~~~----------------------------------------------~~~~~~  214 (304)
                      |++ ..++ .+.||.+.+|++...+...                                              ......
T Consensus       160 p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~  239 (361)
T 2oiz_A          160 PNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPW  239 (361)
T ss_dssp             TTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEE
T ss_pred             CCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccc
Confidence            433 1222 2244444444433211100                                              000000


Q ss_pred             eccc-----cc-cccceeEEEeecCCCcEEEEEec----------CCeEEEEecCCceEeEEeccccCCeEEEEECCCCc
Q 022019          215 KGNK-----EG-QAGIMSAIAFSPTHTGMLAIGSY----------SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN  278 (304)
Q Consensus       215 ~~~~-----~~-~~~~v~~~~~~p~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  278 (304)
                      ....     .+ .......++|+|+++.++++...          .+.|.+||+.+++.+.++..+.  +.+++|+|||+
T Consensus       240 ~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~  317 (361)
T 2oiz_A          240 SLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRN  317 (361)
T ss_dssp             ESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTT
T ss_pred             cccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCC
Confidence            0000     00 00111237899955555544431          3489999999999999998776  89999999999


Q ss_pred             EEEEeeccCCeEEEEecccc--eee
Q 022019          279 YLYTGGRKDPYILCWDLRKA--VQV  301 (304)
Q Consensus       279 ~l~~~~~~d~~i~vwd~~~~--~~~  301 (304)
                      +|++++ . +.|.+||+.++  +.+
T Consensus       318 ~l~v~n-~-~~v~v~D~~t~~l~~~  340 (361)
T 2oiz_A          318 LMLTLD-G-GNVNVYDISQPEPKLL  340 (361)
T ss_dssp             EEEEEC-S-SCEEEEECSSSSCEEE
T ss_pred             EEEEeC-C-CeEEEEECCCCcceee
Confidence            999988 6 99999999998  654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.78  E-value=7.9e-18  Score=145.57  Aligned_cols=194  Identities=14%  Similarity=0.118  Sum_probs=133.9

Q ss_pred             eecCCC-CceeEEEEcCCCCeEEEecC---CCeEEEeeCCC--CCCccccccccccccCCccceEEEeecCCeEEEEeec
Q 022019           55 TSSIPN-NFLKGIKWSPDGSSFLTSSE---DKTLRIFSLPE--NGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF  128 (304)
Q Consensus        55 ~~~~h~-~~V~~i~~s~~~~~l~s~~~---dg~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  128 (304)
                      .+..|. ..|..++|+|| +.+++++.   +....+|.+..  ......                  ......+...+| 
T Consensus        58 ~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~------------------l~~~~~~~~~~~-  117 (582)
T 3o4h_A           58 KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR------------------LEAVKPMRILSG-  117 (582)
T ss_dssp             ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE------------------CTTSCSBEEEEE-
T ss_pred             eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcccc------------------ccCCCCceeeee-
Confidence            344455 68999999999 77777664   45567766543  111100                  001112223344 


Q ss_pred             CccceeCCCc--cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcC----CeEEEEEc
Q 022019          129 PHMSASDPTS--CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN----KSVRVFDV  201 (304)
Q Consensus       129 ~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d----~~i~v~d~  201 (304)
                            +|++  ..+++++.+ .+.+||+.+++........       . .+++|+|||+.|+ ++.+    +.|++||+
T Consensus       118 ------s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~-------~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~  182 (582)
T 3o4h_A          118 ------VDTGEAVVFTGATED-RVALYALDGGGLRELARLP-------G-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNL  182 (582)
T ss_dssp             ------EECSSCEEEEEECSS-CEEEEEEETTEEEEEEEES-------S-CEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred             ------CCCCCeEEEEecCCC-CceEEEccCCcEEEeecCC-------C-ceEEECCCCCEEEEEEEcCCCCeEEEEEcC
Confidence                  4455  345555544 4569999988765544321       1 6899999999999 4455    67999998


Q ss_pred             CCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC--eEEEEecCCceEeEEeccccCCeEEEE-------
Q 022019          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGVTHVQ-------  272 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~-------  272 (304)
                      .++..     ..+    ..+...+..++|+| +++.|+++..++  .|++||+.++++. .+.+|...+..+.       
T Consensus       183 ~~g~~-----~~l----~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~  251 (582)
T 3o4h_A          183 SSGGL-----RVF----DSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL  251 (582)
T ss_dssp             TTCCC-----EEE----CCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred             CCCCc-----eEe----ecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence            76421     122    44566789999999 677788888888  8999999988877 7777777676677       


Q ss_pred             -ECCCCcEEEEeeccCCeEEEEec
Q 022019          273 -FSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       273 -~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                       |+|||..+++++ .|+.+++|++
T Consensus       252 ~~spdg~~~~~~~-~~g~~~l~~~  274 (582)
T 3o4h_A          252 GYLPDGRLAVVAR-REGRSAVFID  274 (582)
T ss_dssp             EECTTSCEEEEEE-ETTEEEEEET
T ss_pred             eEcCCCcEEEEEE-cCCcEEEEEE
Confidence             999998888888 9999999999

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=1.4e-15  Score=119.52  Aligned_cols=228  Identities=12%  Similarity=0.195  Sum_probs=146.4

Q ss_pred             cCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccc-----------ccccc-cCCccce---------EEE
Q 022019           57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA-----------CSLAK-DQDSYEA---------SLV  115 (304)
Q Consensus        57 ~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-----------~~~~~-~~~~~~~---------~~~  115 (304)
                      .+|-..+.+++++++|.++++...++.|.+||.... .......           ..... .......         ...
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCc-EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            456678999999999998888888999999997732 2211110           00000 0000000         000


Q ss_pred             ee-cCCeEEEEe----ecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE
Q 022019          116 VT-EGESVYDFC----WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA  190 (304)
Q Consensus       116 ~~-~~~~v~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~  190 (304)
                      .. .+..+..+.    -.|..++++++|+++++...++.|.+||.. ++....+....   ....+.+++++|+|+++++
T Consensus       105 ~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~---~~~~p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          105 YNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK---HLEFPNGVVVNDKQEIFIS  180 (286)
T ss_dssp             ECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT---TCSSEEEEEECSSSEEEEE
T ss_pred             ECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCC---ccCCcEEEEECCCCCEEEE
Confidence            00 111111111    134556788999988888788999999964 55544443211   1225789999999997776


Q ss_pred             E-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC-eEEEEecCCceEeEEeccccC--
Q 022019          191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-TSAIYREDNMELLYVLHGQEG--  266 (304)
Q Consensus       191 ~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~--  266 (304)
                      . .++.|++||...  .   .+..+..  .++...+..++++| ++.++++...++ .|.+||. .++.+..+..+..  
T Consensus       181 ~~~~~~i~~~~~~g--~---~~~~~~~--~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~  251 (286)
T 1q7f_A          181 DNRAHCVKVFNYEG--Q---YLRQIGG--EGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHA  251 (286)
T ss_dssp             EGGGTEEEEEETTC--C---EEEEESC--TTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCS
T ss_pred             ECCCCEEEEEcCCC--C---EEEEEcc--CCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCC
Confidence            6 789999999753  1   1122211  22234578999999 667888777776 9999996 5666666654433  


Q ss_pred             CeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       267 ~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      .+.+++++|+|+++++ + .|++|++|++.....
T Consensus       252 ~~~~i~~~~~g~l~vs-~-~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          252 QCFDVALMDDGSVVLA-S-KDYRLYIYRYVQLAP  283 (286)
T ss_dssp             CEEEEEEETTTEEEEE-E-TTTEEEEEECSCCCC
T ss_pred             cceeEEECCCCcEEEE-C-CCCeEEEEEcccccc
Confidence            4789999999986665 6 799999999876543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.75  E-value=1.7e-16  Score=130.26  Aligned_cols=206  Identities=13%  Similarity=0.074  Sum_probs=135.2

Q ss_pred             eecCCCCceeE-----EEEcCCCCeEEEecC-CCe--EEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEe
Q 022019           55 TSSIPNNFLKG-----IKWSPDGSSFLTSSE-DKT--LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC  126 (304)
Q Consensus        55 ~~~~h~~~V~~-----i~~s~~~~~l~s~~~-dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  126 (304)
                      .+..|......     .+|+|||++|+.++. +|.  |.+||+.+++....                 ...+...+... 
T Consensus        25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-----------------t~~~~~~~~~~-   86 (388)
T 3pe7_A           25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-----------------TEGRGDNTFGG-   86 (388)
T ss_dssp             ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-----------------CCSSCBCSSSC-
T ss_pred             EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-----------------eeCCCCCccce-
Confidence            55566655555     899999999998887 674  77788875532111                 01111111122 


Q ss_pred             ecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEE--EEECCCCcEEEEE-------------
Q 022019          127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS--VAFNPTGTKIFAG-------------  191 (304)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~--i~~~~~~~~l~~~-------------  191 (304)
                            .++|+|+.|+.++.++.|++||+.+++.......+..     .+..  ..++|+++.+++.             
T Consensus        87 ------~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~-----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~  155 (388)
T 3pe7_A           87 ------FLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE-----WVGYGTWVANSDCTKLVGIEIRREDWVPLTDW  155 (388)
T ss_dssp             ------EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred             ------EEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh-----cccccceeECCCCCeeccccccCccccccccc
Confidence                  3589999999999999999999999887766654432     2322  3458999988731             


Q ss_pred             ----------cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeec-CCCcEEEEEecC------CeEEEEecCC
Q 022019          192 ----------YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP-THTGMLAIGSYS------QTSAIYREDN  254 (304)
Q Consensus       192 ----------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~d------g~i~i~d~~~  254 (304)
                                .+..|++||+.++.  .   ..+    ..+...+..++|+| ++. .|+.++.+      ..|.++|...
T Consensus       156 ~~~~~~~~~~~~~~l~~~d~~~g~--~---~~l----~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~  225 (388)
T 3pe7_A          156 KKFHEFYFTKPCCRLMRVDLKTGE--S---TVI----LQENQWLGHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDG  225 (388)
T ss_dssp             HHHHHHGGGCCCEEEEEEETTTCC--E---EEE----EEESSCEEEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTS
T ss_pred             chhhhhhccCCcceEEEEECCCCc--e---EEe----ecCCccccccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCC
Confidence                      33679999987642  1   111    12334578999999 655 55544442      3788888765


Q ss_pred             ceEeEEecccc--CCeEEEEECCCCcEEEEeeccCC----eEEEEeccccee
Q 022019          255 MELLYVLHGQE--GGVTHVQFSRDGNYLYTGGRKDP----YILCWDLRKAVQ  300 (304)
Q Consensus       255 ~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~d~----~i~vwd~~~~~~  300 (304)
                      +.. ..+..+.  ..+..+.|+|||+.|+..+..++    .|++||+.+++.
T Consensus       226 ~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          226 TNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             CCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred             Cce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence            543 3344343  35788999999998866552322    399999998763

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.73  E-value=1.3e-15  Score=124.90  Aligned_cols=209  Identities=11%  Similarity=0.096  Sum_probs=129.6

Q ss_pred             ecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC
Q 022019           56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (304)
                      ..+|...+..+.|+|||+.|+.++.++.|.+||+.+++...                 +...+...+....|     .++
T Consensus        76 t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~-----------------~~~~~~~~~~~~~~-----~~~  133 (388)
T 3pe7_A           76 TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV-----------------VYQVPAEWVGYGTW-----VAN  133 (388)
T ss_dssp             CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE-----------------EEECCTTEEEEEEE-----EEC
T ss_pred             eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee-----------------eeechhhcccccce-----eEC
Confidence            34566666678999999999999999999999998654211                 11112222322333     237


Q ss_pred             CCccEEEEE----------------------eCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECC-CCcEEE-EE
Q 022019          136 PTSCVFAST----------------------TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIF-AG  191 (304)
Q Consensus       136 ~~~~~l~~~----------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~-~~  191 (304)
                      +++.+++..                      ..+..|++||+.+++....... ..     .+..+.|+| +|+.|+ +.
T Consensus       134 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-----~~~~~~~sp~dg~~l~~~~  207 (388)
T 3pe7_A          134 SDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE-NQ-----WLGHPIYRPYDDSTVAFCH  207 (388)
T ss_dssp             TTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-SS-----CEEEEEEETTEEEEEEEEE
T ss_pred             CCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC-Cc-----cccccEECCCCCCEEEEEE
Confidence            788877643                      2346799999998876544332 21     678999999 999888 44


Q ss_pred             c------CCeEEEEEcCCCCccceeeeeeeccccccc-cceeEEEeecCCCcEEEEEecCC----eEEEEecCCceE--e
Q 022019          192 Y------NKSVRVFDVHRPGRDFEKYSTLKGNKEGQA-GIMSAIAFSPTHTGMLAIGSYSQ----TSAIYREDNMEL--L  258 (304)
Q Consensus       192 ~------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~--~  258 (304)
                      .      ...|.++|+....  .   ..+.   .... ..+..++|+|++..+++++..++    .|++||+.+++.  +
T Consensus       208 ~~~~~~~~~~l~~~d~~~~~--~---~~l~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l  279 (388)
T 3pe7_A          208 EGPHDLVDARMWLINEDGTN--M---RKVK---THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL  279 (388)
T ss_dssp             CSCTTTSSCSEEEEETTSCC--C---EESC---CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE
T ss_pred             ecCCCCCcceEEEEeCCCCc--e---EEee---eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE
Confidence            3      2367788875421  1   1111   1111 34778899995554545444433    399999988763  3


Q ss_pred             EEeccccCC---eEEEEECCCCcEEEEee--------ccCCeEEEEeccccee
Q 022019          259 YVLHGQEGG---VTHVQFSRDGNYLYTGG--------RKDPYILCWDLRKAVQ  300 (304)
Q Consensus       259 ~~~~~~~~~---v~~~~~~~~~~~l~~~~--------~~d~~i~vwd~~~~~~  300 (304)
                      ..+.++...   ...+.|+|||+.|+...        ..+..|++||+.+++.
T Consensus       280 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          280 TSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             EEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred             EcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence            334331111   11237999999887542        1567999999988754

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=1.9e-16  Score=140.58  Aligned_cols=229  Identities=14%  Similarity=0.077  Sum_probs=140.5

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCc-----eeEEEEcCCCCeEEEecCC---------CeEEEeeCCCCCCcccccc
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNF-----LKGIKWSPDGSSFLTSSED---------KTLRIFSLPENGISYDVNA  100 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----V~~i~~s~~~~~l~s~~~d---------g~v~vwd~~~~~~~~~~~~  100 (304)
                      .+..|++.......      .+.+|...     ...+.|||||++|+.++.+         +.+.+||+.+++... +  
T Consensus        37 ~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l--  107 (740)
T 4a5s_A           37 NILVFNAEYGNSSV------FLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-E--  107 (740)
T ss_dssp             EEEEEETTTCCEEE------EECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-S--
T ss_pred             cEEEEECCCCceEE------EEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-c--
Confidence            35566766554332      34455432     3458999999999998876         566799998764321 0  


Q ss_pred             ccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccc-----cc--
Q 022019          101 CSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD-----EI--  173 (304)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~--  173 (304)
                                     ..+...+...+|       ||||+.||.+. ++.|++|++.+++..+ +.......     ..  
T Consensus       108 ---------------~~~~~~~~~~~~-------SPdG~~la~~~-~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~  163 (740)
T 4a5s_A          108 ---------------ERIPNNTQWVTW-------SPVGHKLAYVW-NNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDW  163 (740)
T ss_dssp             ---------------SCCCTTEEEEEE-------CSSTTCEEEEE-TTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCH
T ss_pred             ---------------ccCCCcceeeEE-------CCCCCEEEEEE-CCeEEEEECCCCceEE-EcCCCCccceecCcccc
Confidence                           112245666666       88999999885 6789999998877543 22111100     00  


Q ss_pred             -------cceEEEEECCCCcEEE-EE-cCC-----------------------------------eEEEEEcCC---CCc
Q 022019          174 -------TAAFSVAFNPTGTKIF-AG-YNK-----------------------------------SVRVFDVHR---PGR  206 (304)
Q Consensus       174 -------~~v~~i~~~~~~~~l~-~~-~d~-----------------------------------~i~v~d~~~---~~~  206 (304)
                             .....+.|||||+.|+ +. .++                                   .|++||+..   +..
T Consensus       164 v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~  243 (740)
T 4a5s_A          164 VYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN  243 (740)
T ss_dssp             HHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred             cccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence                   1223589999999998 43 333                                   356666654   311


Q ss_pred             cceeeeeeec--cccccccceeEEEeecCCCcEEEEEec----CCeEEEEecCCce----Ee--EEe--ccccCCeE---
Q 022019          207 DFEKYSTLKG--NKEGQAGIMSAIAFSPTHTGMLAIGSY----SQTSAIYREDNME----LL--YVL--HGQEGGVT---  269 (304)
Q Consensus       207 ~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~----dg~i~i~d~~~~~----~~--~~~--~~~~~~v~---  269 (304)
                       .. ...+..  ...++...+..++|+| ++++++....    +..|++||+.+++    +.  ..+  .+|...|.   
T Consensus       244 -~~-~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~  320 (740)
T 4a5s_A          244 -AT-SIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFR  320 (740)
T ss_dssp             -CC-EEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSS
T ss_pred             -ce-EEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCc
Confidence             00 011110  0013566789999999 5665555433    2369999998876    22  222  34555554   


Q ss_pred             --EEEECCCCcEEE-EeeccCC--eEEEEecccce
Q 022019          270 --HVQFSRDGNYLY-TGGRKDP--YILCWDLRKAV  299 (304)
Q Consensus       270 --~~~~~~~~~~l~-~~~~~d~--~i~vwd~~~~~  299 (304)
                        .+.|+|||+.|+ ..+..+|  .|.+||+.+++
T Consensus       321 ~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          321 PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             CCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             CCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence              789999999877 6653444  68888887654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=1.8e-14  Score=115.52  Aligned_cols=216  Identities=14%  Similarity=0.138  Sum_probs=142.9

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCC-CccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG-ISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (304)
                      ++.....+|+++|+|+++++...++.|++|+..... ....+..... ....       ..+-.       .|..++++|
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~-~g~~-------~~~~~-------~P~~ia~~~  152 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ-PGSD-------QNHFC-------QPTDVAVEP  152 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB-CCCS-------TTCCS-------SEEEEEECT
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC-CCCC-------ccccC-------CCcEEEEeC
Confidence            455678999999999988888889999999986432 1111100000 0000       00011       233445588


Q ss_pred             -CccEEEEEe-CCCCEEEEEcCCCeeeEEeeccccc-----ccccceEEEEECCC-CcEEEEE-cCCeEEEEEcCCCCcc
Q 022019          137 -TSCVFASTT-RDHPIHLWDATTGLLRCTYRAYDAV-----DEITAAFSVAFNPT-GTKIFAG-YNKSVRVFDVHRPGRD  207 (304)
Q Consensus       137 -~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~~~v~~i~~~~~-~~~l~~~-~d~~i~v~d~~~~~~~  207 (304)
                       ++.++++.+ .++.|++|+ .+++....+......     .....+.+++++|+ +.++++. .++.|++||..++ . 
T Consensus       153 ~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~-  229 (329)
T 3fvz_A          153 STGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-E-  229 (329)
T ss_dssp             TTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-C-
T ss_pred             CCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-c-
Confidence             788888886 689999999 556666655432210     12224789999998 5655565 8899999999743 1 


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEe-------cCCeEEEEecCCceEeEEec---cccCCeEEEEECCCC
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-------YSQTSAIYREDNMELLYVLH---GQEGGVTHVQFSRDG  277 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~  277 (304)
                        ....+..  ..+...+.+++|+|  +..+.+.+       .+..|++||..+++.+..+.   ++......++++|+|
T Consensus       230 --~~~~~~~--~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG  303 (329)
T 3fvz_A          230 --FVREIKH--ASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG  303 (329)
T ss_dssp             --EEEEECC--TTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS
T ss_pred             --EEEEEec--cccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC
Confidence              1122211  23445678899998  33333332       24489999999999888873   566778999999999


Q ss_pred             cEEEEeeccCCeEEEEecccc
Q 022019          278 NYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       278 ~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      ..+++.. .++.|++|++...
T Consensus       304 ~lyvad~-~~~~I~~~~~~~~  323 (329)
T 3fvz_A          304 TVYIGDA-HTNTVWKFTLTEK  323 (329)
T ss_dssp             EEEEEES-SSCCEEEEEEEEC
T ss_pred             CEEEEEC-CCCEEEEEeCCcc
Confidence            7666666 8999999998653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.71  E-value=4.8e-15  Score=118.88  Aligned_cols=216  Identities=12%  Similarity=0.148  Sum_probs=140.8

Q ss_pred             CCceeEEEEcCCCCeEEEecCCC------------------------eEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDK------------------------TLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg------------------------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      -+.|.+|+++|+|+++++...++                        +|.+||..++........               
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------------   87 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK---------------   87 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT---------------
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC---------------
Confidence            35599999999999998887773                        577777654433110000               


Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCe-eeEEeecccc----cccccceEEEEECC-CCcEEE
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDA----VDEITAAFSVAFNP-TGTKIF  189 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~----~~~~~~v~~i~~~~-~~~~l~  189 (304)
                       ..-.       .|..++++++|+++++...++.|++||..... .+..+.....    ..+...+.+++++| ++.+++
T Consensus        88 -~~~~-------~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv  159 (329)
T 3fvz_A           88 -NLFY-------LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFV  159 (329)
T ss_dssp             -TTCS-------SEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEE
T ss_pred             -CccC-------CceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEE
Confidence             0001       24445568899988888889999999976442 3333321110    11223678999999 787777


Q ss_pred             EE--cCCeEEEEEcCCCCccceeeeeeecc---ccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec--
Q 022019          190 AG--YNKSVRVFDVHRPGRDFEKYSTLKGN---KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--  262 (304)
Q Consensus       190 ~~--~d~~i~v~d~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--  262 (304)
                      +.  .++.|++||...  .....+......   ..++...+..++++|+++.++++...++.|++||..+++.+..+.  
T Consensus       160 ~d~~~~~~I~~~~~~g--~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~  237 (329)
T 3fvz_A          160 SDGYCNSRIVQFSPSG--KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA  237 (329)
T ss_dssp             EECSSCCEEEEECTTS--CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred             EeCCCCCeEEEEcCCC--CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence            65  489999999532  211111110000   012334478999999558888888889999999998888888874  


Q ss_pred             cccCCeEEEEECCCCcEEEEee------ccCCeEEEEecccceee
Q 022019          263 GQEGGVTHVQFSRDGNYLYTGG------RKDPYILCWDLRKAVQV  301 (304)
Q Consensus       263 ~~~~~v~~~~~~~~~~~l~~~~------~~d~~i~vwd~~~~~~~  301 (304)
                      .+...+.+++|+| +..+.+.+      ..+..|++|++.+++.+
T Consensus       238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~  281 (329)
T 3fvz_A          238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEII  281 (329)
T ss_dssp             TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEE
T ss_pred             ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEE
Confidence            4556789999999 43333332      14558999999887654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.70  E-value=3.6e-15  Score=130.92  Aligned_cols=200  Identities=12%  Similarity=0.008  Sum_probs=128.0

Q ss_pred             CCCceeEEEEcCCCCeEEEecCC----------CeEEEeeCCC------CCCccccccccccccCCccceEEEe-ecCCe
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSED----------KTLRIFSLPE------NGISYDVNACSLAKDQDSYEASLVV-TEGES  121 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~d----------g~v~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  121 (304)
                      |...+.+++|+|||+.|++++.|          ..|.+||+.+      +...                  ... .+...
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------~l~~~~~~~  189 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR------------------ELSDDAHRF  189 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE------------------ESSCSCSSE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee------------------EEEecCCCc
Confidence            67789999999999999988876          5899999875      2211                  011 11233


Q ss_pred             EEEEeecCccceeCCCccEEEEEeCC--------CCEEEEEcC-CC---eeeEEeecccccccccceEEEEECCCCcEEE
Q 022019          122 VYDFCWFPHMSASDPTSCVFASTTRD--------HPIHLWDAT-TG---LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (304)
Q Consensus       122 v~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  189 (304)
                      +..+.       ++|||++|+.++.+        ..|++||+. ++   +.......+.     ..+..+.|+|||++++
T Consensus       190 ~~~~~-------~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~-----~~~~~~~~spdg~l~~  257 (662)
T 3azo_A          190 VTGPR-------LSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE-----EAIAQAEWAPDGSLIV  257 (662)
T ss_dssp             ECCCE-------ECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT-----BCEEEEEECTTSCEEE
T ss_pred             ccCce-------ECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC-----ceEcceEECCCCeEEE
Confidence            33444       48999999888755        379999998 56   3333332222     2788999999999666


Q ss_pred             EE-cCC--eEEEEEcCCCCccceeeeeeecccccccc--------ceeEEEeecCCCcEEEEEecCCeEEEE--ecCCce
Q 022019          190 AG-YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAG--------IMSAIAFSPTHTGMLAIGSYSQTSAIY--REDNME  256 (304)
Q Consensus       190 ~~-~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~p~~~~~l~~~~~dg~i~i~--d~~~~~  256 (304)
                      ++ .++  .|++||+..+  ...   .+.   ..+..        .+..++|+| ++.++++++. +.++||  |+..++
T Consensus       258 ~~~~~~~~~l~~~~~~~~--~~~---~l~---~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          258 ATDRTGWWNLHRVDPATG--AAT---QLC---RREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGE  327 (662)
T ss_dssp             EECTTSSCEEEEECTTTC--CEE---ESS---CCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred             EECCCCCeEEEEEECCCC--cee---ecc---cccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCc
Confidence            66 677  5666665432  111   111   11111        146788999 7778999988 998998  555555


Q ss_pred             EeEEeccccCCeEEE-EECCCCcEEEEeeccCC--eEEEEeccccee
Q 022019          257 LLYVLHGQEGGVTHV-QFSRDGNYLYTGGRKDP--YILCWDLRKAVQ  300 (304)
Q Consensus       257 ~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~~d~--~i~vwd~~~~~~  300 (304)
                       +..+..|...+..+ +++++.-++++++ .+.  .|.+||+.+++.
T Consensus       328 -~~~l~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          328 -LVDAAGPWTEWAATLTVSGTRAVGVAAS-PRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             -EEECCSSCCEEEEEEEEETTEEEEEEEE-TTEEEEEEEEETTTCCE
T ss_pred             -EEEecCCCCeEEEEEecCCCEEEEEEcC-CCCCCEEEEEECCCCce
Confidence             56777777777777 5543333333334 454  455566666643

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=1.4e-15  Score=133.41  Aligned_cols=212  Identities=12%  Similarity=0.080  Sum_probs=134.2

Q ss_pred             eecCCCCcee---------EEEEc--CCCCe-EEEecC-CCeEEEeeCC--C-CCCccccccccccccCCccceEEEeec
Q 022019           55 TSSIPNNFLK---------GIKWS--PDGSS-FLTSSE-DKTLRIFSLP--E-NGISYDVNACSLAKDQDSYEASLVVTE  118 (304)
Q Consensus        55 ~~~~h~~~V~---------~i~~s--~~~~~-l~s~~~-dg~v~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (304)
                      .+..|...+.         ...|+  |||+. |+.++. +..|.++++.  . +.. ..+....            ...+
T Consensus        62 ~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~------------~~~~  128 (662)
T 3azo_A           62 SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVS------------AVGG  128 (662)
T ss_dssp             ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCC------------CSTT
T ss_pred             eeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCc------------cCCC
Confidence            4556666666         66676  99998 776554 5566666654  1 211 1100000            0002


Q ss_pred             CCeEEEEeecCccceeCCCccEEEEEeCC----------CCEEEEEcCC------CeeeEEee-cccccccccceEEEEE
Q 022019          119 GESVYDFCWFPHMSASDPTSCVFASTTRD----------HPIHLWDATT------GLLRCTYR-AYDAVDEITAAFSVAF  181 (304)
Q Consensus       119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~------~~~~~~~~-~~~~~~~~~~v~~i~~  181 (304)
                      ...+..++|       +|||+.|++++.+          ..|++||+.+      ++.. .+. ...     ..+..++|
T Consensus       129 ~~~~~~~~~-------spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~-----~~~~~~~~  195 (662)
T 3azo_A          129 GLRWADPVL-------LPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAH-----RFVTGPRL  195 (662)
T ss_dssp             CEEEEEEEE-------ETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCS-----SEECCCEE
T ss_pred             CccccCcEE-------CCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCC-----CcccCceE
Confidence            345566666       8899999998877          5899999987      5543 232 222     26778999


Q ss_pred             CCCCcEEE-EEcC--------CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC--eEEEE
Q 022019          182 NPTGTKIF-AGYN--------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIY  250 (304)
Q Consensus       182 ~~~~~~l~-~~~d--------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~  250 (304)
                      +|||+.|+ ++.+        ..|++||+...+. ......+.   .++...+..+.|+| ++++++++..++  .|.+|
T Consensus       196 SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~-~~~~~~l~---~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~  270 (662)
T 3azo_A          196 SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR-FADTRTLL---GGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRV  270 (662)
T ss_dssp             CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC-EEEEEEEE---EETTBCEEEEEECT-TSCEEEEECTTSSCEEEEE
T ss_pred             CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc-ccccEEeC---CCCCceEcceEECC-CCeEEEEECCCCCeEEEEE
Confidence            99999998 4444        3799999973221 00111111   23356688999999 555888888888  67777


Q ss_pred             ecCCceEeEEeccccCC--------eEEEEECCCCcEEEEeeccCCeEEEE--ecccce
Q 022019          251 REDNMELLYVLHGQEGG--------VTHVQFSRDGNYLYTGGRKDPYILCW--DLRKAV  299 (304)
Q Consensus       251 d~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~~d~~i~vw--d~~~~~  299 (304)
                      |+.+++.......+...        +..++|+|++++++++. . +.++||  |+.+++
T Consensus       271 ~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          271 DPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG-K-GAAVLGILDPESGE  327 (662)
T ss_dssp             CTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB-S-SSCEEEEEETTTTE
T ss_pred             ECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE-c-CccEEEEEECCCCc
Confidence            77666654433333222        56789999999999998 7 999999  544443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.69  E-value=2.3e-13  Score=109.25  Aligned_cols=205  Identities=13%  Similarity=0.094  Sum_probs=136.9

Q ss_pred             eeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      ..+..+...+.+++|+|+|++++++..++.|.+||..++....                 +.......+..+++      
T Consensus        38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~-----------------~~~~~~~~~~~i~~------   94 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-----------------PFVSHKANPAAIKI------   94 (333)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-----------------EEECSSSSEEEEEE------
T ss_pred             EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE-----------------EeeCCCCCcceEEE------
Confidence            3455677778999999999988888889999999987553211                 11122345666666      


Q ss_pred             eCCCccEEEEEeCC----CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEc-------CCeEEEEEcC
Q 022019          134 SDPTSCVFASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY-------NKSVRVFDVH  202 (304)
Q Consensus       134 ~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-------d~~i~v~d~~  202 (304)
                       +++++++++...+    +.|.+||..++.....+....   ....+.++.++|+|+++++..       .+.|..+|..
T Consensus        95 -~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~  170 (333)
T 2dg1_A           95 -HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS---TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD  170 (333)
T ss_dssp             -CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS---SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT
T ss_pred             -CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc---cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC
Confidence             7789888877766    689999988776543332111   123688999999998887654       2455555544


Q ss_pred             CCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC-ceEeE--------EeccccCCeEEEEE
Q 022019          203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLY--------VLHGQEGGVTHVQF  273 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~--------~~~~~~~~v~~~~~  273 (304)
                      .  .....+   .    .....+..++|+|++..++++.+.++.|.+||+.. +..+.        .+.++ ..+..+++
T Consensus       171 ~--~~~~~~---~----~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~  240 (333)
T 2dg1_A          171 F--RTVTPI---I----QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCI  240 (333)
T ss_dssp             S--CCEEEE---E----EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEE
T ss_pred             C--CEEEEe---e----cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEE
Confidence            3  111111   1    11233678999994444556666788999999863 22221        12222 36788999


Q ss_pred             CCCCcEEEEeeccCCeEEEEecc
Q 022019          274 SRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       274 ~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      +++|.++++.. .++.|.+||..
T Consensus       241 d~~G~l~v~~~-~~~~v~~~d~~  262 (333)
T 2dg1_A          241 DSDDNLYVAMY-GQGRVLVFNKR  262 (333)
T ss_dssp             BTTCCEEEEEE-TTTEEEEECTT
T ss_pred             CCCCCEEEEEc-CCCEEEEECCC
Confidence            99999777776 78899999984

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.67  E-value=1.4e-13  Score=108.68  Aligned_cols=206  Identities=12%  Similarity=0.076  Sum_probs=132.5

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+..+...+.+++++|+|+++++...++.|.+||..++.....                 .......   ..-.|..+++
T Consensus        63 ~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~-----------------~~~~~~~---~~~~~~~i~~  122 (296)
T 3e5z_A           63 PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI-----------------ADSFEGK---KLNSPNDVCL  122 (296)
T ss_dssp             EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE-----------------ECEETTE---ECCCCCCEEE
T ss_pred             EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE-----------------eeccCCC---CCCCCCCEEE
Confidence            4445777899999999999888877788999999865543110                 0000000   0012334556


Q ss_pred             CCCccEEEEEeC-----------------CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeE
Q 022019          135 DPTSCVFASTTR-----------------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSV  196 (304)
Q Consensus       135 ~~~~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i  196 (304)
                      +|+|+++++.+.                 .+.|..++.. ++... +....     .....++|+|+++.+++. .++.|
T Consensus       123 d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~-----~~~~gi~~s~dg~~lv~~~~~~~i  195 (296)
T 3e5z_A          123 APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA-PIRDR-----VKPNGLAFLPSGNLLVSDTGDNAT  195 (296)
T ss_dssp             CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE-EECCC-----SSEEEEEECTTSCEEEEETTTTEE
T ss_pred             CCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE-eecCC-----CCCccEEECCCCCEEEEeCCCCeE
Confidence            889998887321                 2345555544 44332 22211     256799999999988655 67899


Q ss_pred             EEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEE-CC
Q 022019          197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF-SR  275 (304)
Q Consensus       197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~-~~  275 (304)
                      ++||+...+........+    ..+...+..+++++ ++.++++.  ++.|.+||.. ++.+..+..+.. +++++| +|
T Consensus       196 ~~~~~~~~g~~~~~~~~~----~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~  266 (296)
T 3e5z_A          196 HRYCLNARGETEYQGVHF----TVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGP  266 (296)
T ss_dssp             EEEEECSSSCEEEEEEEE----CCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEEST
T ss_pred             EEEEECCCCcCcCCCeEe----eCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECC
Confidence            999997322210111111    11334567899999 56655554  8899999986 777778877766 899999 68


Q ss_pred             CCcEEEEeeccCCeEEEEecccc
Q 022019          276 DGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       276 ~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      +++.|++++ .+ .+.-++..+.
T Consensus       267 d~~~L~v~t-~~-~l~~~~~~~~  287 (296)
T 3e5z_A          267 EGRTLYMTV-ST-EFWSIETNVR  287 (296)
T ss_dssp             TSCEEEEEE-TT-EEEEEECSCC
T ss_pred             CCCEEEEEc-CC-eEEEEEcccc
Confidence            999999888 55 4545555444

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.67  E-value=1.7e-14  Score=127.50  Aligned_cols=205  Identities=12%  Similarity=-0.024  Sum_probs=131.5

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCC-----eEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDK-----TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      +|...+..++|||||++||.+..++     .|++||+.+++...                 ..... ..+..++|     
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~-----------------~~~~~-~~~~~~~w-----  178 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP-----------------DVLER-VKFSCMAW-----  178 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE-----------------EEEEE-ECSCCEEE-----
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc-----------------ccccC-cccceEEE-----
Confidence            4555789999999999998765433     89999998664311                 01111 11334445     


Q ss_pred             eeCCCccEEEEEeCCCC----------------EEEEEcCCCeee--EEeecccccccccceEEEEECCCCcEEEE-Ec-
Q 022019          133 ASDPTSCVFASTTRDHP----------------IHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY-  192 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~-  192 (304)
                        +|||+.|+.++.++.                |++|++.+++..  ..+...   .+...+.++.|+|||++|+. +. 
T Consensus       179 --spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~---~~~~~~~~~~~SpDg~~l~~~~~~  253 (710)
T 2xdw_A          179 --THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP---DEPKWMGGAELSDDGRYVLLSIRE  253 (710)
T ss_dssp             --CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT---TCTTCEEEEEECTTSCEEEEEEEC
T ss_pred             --EeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC---CCCeEEEEEEEcCCCCEEEEEEEc
Confidence              889999999988766                999999877632  222221   11225678999999999883 33 


Q ss_pred             ----CCeEEEEEcCC------CCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC---CeEEEEecCCceE--
Q 022019          193 ----NKSVRVFDVHR------PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMEL--  257 (304)
Q Consensus       193 ----d~~i~v~d~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~--  257 (304)
                          +..|++||+..      +....   ..+.    .+...+.. .|+|+++.+++.+..+   +.|.+||+.++..  
T Consensus       254 ~~~~~~~l~~~d~~~~~~~~~~~~~~---~~l~----~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~  325 (710)
T 2xdw_A          254 GCDPVNRLWYCDLQQESNGITGILKW---VKLI----DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK  325 (710)
T ss_dssp             SSSSCCEEEEEEGGGSSSSSCSSCCC---EEEE----CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG
T ss_pred             cCCCccEEEEEECcccccccCCccce---EEee----CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc
Confidence                56899999975      21112   2221    12222333 4788555555554433   3699999987642  


Q ss_pred             eEEeccccC--CeEEEEECCCCcEEEEeeccCCe--EEEEecccce
Q 022019          258 LYVLHGQEG--GVTHVQFSRDGNYLYTGGRKDPY--ILCWDLRKAV  299 (304)
Q Consensus       258 ~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~d~~--i~vwd~~~~~  299 (304)
                      ...+..|..  .+..+.|++++.++++.. .|+.  |.+|++.+|+
T Consensus       326 ~~~l~~~~~~~~~~~~~~~~~~~lv~~~~-~~g~~~l~~~~~~~g~  370 (710)
T 2xdw_A          326 WKVLVPEHEKDVLEWVACVRSNFLVLCYL-HDVKNTLQLHDLATGA  370 (710)
T ss_dssp             CEEEECCCSSCEEEEEEEETTTEEEEEEE-ETTEEEEEEEETTTCC
T ss_pred             ceeccCCCCCCeEEEEEEEcCCEEEEEEE-ECCEEEEEEEECCCCC
Confidence            344444443  688899998888888887 8884  5666765664

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.67  E-value=6.5e-14  Score=110.59  Aligned_cols=202  Identities=12%  Similarity=0.136  Sum_probs=135.0

Q ss_pred             eeecCCCCceeEEEEcCCCC-eEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           54 RTSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        54 ~~~~~h~~~V~~i~~s~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ..+..+.....+++|+|+|+ +++++..++.|..|+..++ . .                 ....+...+..+++     
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~-----------------~~~~~~~~~~~l~~-----   76 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-S-----------------PEMHPSHHQNGHCL-----   76 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-E-----------------EEESSCSSEEEEEE-----
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-E-----------------EEECCCCCcceeeE-----
Confidence            35556677789999999998 7788888999999998754 1 0                 11112234555554     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE----Ec--------------CC
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA----GY--------------NK  194 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~----~~--------------d~  194 (304)
                        +++|+++++...++.|.+||..+++.......... .....+..++++|+|+++++    |.              .+
T Consensus        77 --~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~  153 (296)
T 3e5z_A           77 --NKQGHLIACSHGLRRLERQREPGGEWESIADSFEG-KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGR  153 (296)
T ss_dssp             --CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT-EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred             --CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC-CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCc
Confidence              78999888777778999999988875543322111 11225678999999998885    31              23


Q ss_pred             eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC-CceE---eEEeccccCCeEE
Q 022019          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMEL---LYVLHGQEGGVTH  270 (304)
Q Consensus       195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~v~~  270 (304)
                      .|..++..  + ..   ..+    ..+......++|+| ++..+++.+.++.|++||+. .++.   ...+..+...+.+
T Consensus       154 ~l~~~~~~--g-~~---~~~----~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~  222 (296)
T 3e5z_A          154 WVFRLAPD--G-TL---SAP----IRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDG  222 (296)
T ss_dssp             EEEEECTT--S-CE---EEE----ECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCS
T ss_pred             EEEEECCC--C-CE---EEe----ecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCe
Confidence            55555543  1 11   111    12334468899999 55566777788999999986 4443   2333334556778


Q ss_pred             EEECCCCcEEEEeeccCCeEEEEecc
Q 022019          271 VQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       271 ~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      ++++++|++.++.   ++.|.+|+..
T Consensus       223 i~~d~~G~l~v~~---~~~v~~~~~~  245 (296)
T 3e5z_A          223 LRVDAGGLIWASA---GDGVHVLTPD  245 (296)
T ss_dssp             EEEBTTSCEEEEE---TTEEEEECTT
T ss_pred             EEECCCCCEEEEc---CCeEEEECCC
Confidence            9999999855543   6789999986

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.66  E-value=6.2e-13  Score=106.71  Aligned_cols=196  Identities=10%  Similarity=0.067  Sum_probs=126.3

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCC----CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSED----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      .+...+.+++|+|+|+++++...+    +.|.+||..++........               ......+..+.+      
T Consensus        84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~---------------~~~~~~~~~i~~------  142 (333)
T 2dg1_A           84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED---------------LSTAYCIDDMVF------  142 (333)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS---------------SSSCCCEEEEEE------
T ss_pred             CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc---------------CccCCcccceEE------
Confidence            456789999999999988877666    6899999876543211000               001234555555      


Q ss_pred             eCCCccEEEEEeC------CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCC
Q 022019          134 SDPTSCVFASTTR------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPG  205 (304)
Q Consensus       134 ~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~  205 (304)
                       +|+|+++++...      .+.|..+|..+++........      ..+..++|+|+++.++ +. .++.|.+||+...+
T Consensus       143 -d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g  215 (333)
T 2dg1_A          143 -DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI------SVANGIALSTDEKVLWVTETTANRLHRIALEDDG  215 (333)
T ss_dssp             -CTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             -CCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC------CcccceEECCCCCEEEEEeCCCCeEEEEEecCCC
Confidence             778888777654      355666666555443322211      1567899999998766 44 67899999996433


Q ss_pred             ccceeee-eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC------CeEEEEECCCCc
Q 022019          206 RDFEKYS-TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG------GVTHVQFSRDGN  278 (304)
Q Consensus       206 ~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~v~~~~~~~~~~  278 (304)
                      .....+. .......++ ..+..+++++ ++.++++...++.|.+||. .++.+..+..+..      .+.+++|+|++.
T Consensus       216 ~~~~~~~~~~~~~~~~~-~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~  292 (333)
T 2dg1_A          216 VTIQPFGATIPYYFTGH-EGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTN  292 (333)
T ss_dssp             SSEEEEEEEEEEECCSS-SEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred             cCcccccceEEEecCCC-CCCCceEECC-CCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCC
Confidence            2222111 111011112 3577899999 6667777777899999998 4666666654432      689999999988


Q ss_pred             EEEEee
Q 022019          279 YLYTGG  284 (304)
Q Consensus       279 ~l~~~~  284 (304)
                      .|+.++
T Consensus       293 ~L~v~~  298 (333)
T 2dg1_A          293 QLIICS  298 (333)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            887666

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.66  E-value=7.7e-14  Score=108.56  Aligned_cols=202  Identities=9%  Similarity=0.008  Sum_probs=135.8

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      +...+.+|+++++|+++++.. ++.|.+||.........                 ..........+       +++++|
T Consensus        65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~-----------------~~~~~~~p~~i-------~~~~~g  119 (270)
T 1rwi_B           65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL-----------------PFDGLNYPEGL-------AVDTQG  119 (270)
T ss_dssp             SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC-----------------CCCSCSSEEEE-------EECTTC
T ss_pred             CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee-----------------ecCCcCCCcce-------EECCCC
Confidence            345688999999998776666 88999999875432100                 00011233444       447788


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeecc
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~  217 (304)
                      +++++...++.|.+|+..+........  .   ....+.+++++++|+++++. .++.|.+||......     ...   
T Consensus       120 ~l~v~~~~~~~i~~~~~~~~~~~~~~~--~---~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-----~~~---  186 (270)
T 1rwi_B          120 AVYVADRGNNRVVKLAAGSKTQTVLPF--T---GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-----VVL---  186 (270)
T ss_dssp             CEEEEEGGGTEEEEECTTCCSCEECCC--C---SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE-----EEC---
T ss_pred             CEEEEECCCCEEEEEECCCceeEeecc--c---cCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce-----Eee---
Confidence            888877778889999765443322111  1   11256789999999866666 678999999865311     110   


Q ss_pred             ccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       218 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      .......+.+++++| ++.++++...++.|.+||............+...+.+++++|+|+.+++.. .++.|+++++..
T Consensus       187 ~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~v~~~~~~~  264 (270)
T 1rwi_B          187 PFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR-GNDRVVKLTSLE  264 (270)
T ss_dssp             CCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG-GGTEEEEECCCG
T ss_pred             cccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC-CCCEEEEEcCCC
Confidence            112224578999999 567777777788999999876543332223335689999999998777777 899999999987


Q ss_pred             cee
Q 022019          298 AVQ  300 (304)
Q Consensus       298 ~~~  300 (304)
                      .+.
T Consensus       265 ~~~  267 (270)
T 1rwi_B          265 HHH  267 (270)
T ss_dssp             GGS
T ss_pred             ccc
Confidence            654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.65  E-value=4e-13  Score=114.65  Aligned_cols=199  Identities=12%  Similarity=0.016  Sum_probs=139.2

Q ss_pred             CCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCC
Q 022019           70 PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHP  149 (304)
Q Consensus        70 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~  149 (304)
                      |.+.++++...++.|.++|..+++....                  +..+..+..       +.++|+|+++++++.|+.
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~------------------i~~g~~p~~-------v~~SpDGr~lyv~~~dg~  219 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTV------------------LDTGYAVHI-------SRLSASGRYLFVIGRDGK  219 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEE------------------EECSSCEEE-------EEECTTSCEEEEEETTSE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEE------------------EeCCCCccc-------eEECCCCCEEEEEcCCCe
Confidence            4455777788899999999987644221                  112223333       455999999999999999


Q ss_pred             EEEEEcC--CCeeeEEeecccccccccceEEEEEC----CCCcEEEEE--cCCeEEEEEcCCCCccceeeeeeecccc--
Q 022019          150 IHLWDAT--TGLLRCTYRAYDAVDEITAAFSVAFN----PTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKE--  219 (304)
Q Consensus       150 i~i~d~~--~~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~--  219 (304)
                      |.+||+.  +++.+..+....      ....++|+    |+|++++++  .++.|.++|..+.. ....+........  
T Consensus       220 V~viD~~~~t~~~v~~i~~G~------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~~~~~~  292 (567)
T 1qks_A          220 VNMIDLWMKEPTTVAEIKIGS------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQ  292 (567)
T ss_dssp             EEEEETTSSSCCEEEEEECCS------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTC
T ss_pred             EEEEECCCCCCcEeEEEecCC------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEeccccccccc
Confidence            9999996  777766665433      45789999    699999954  78999999987632 2221111100001  


Q ss_pred             -cc-ccceeEEEeecCCCcEEEEEecCCeEEEEecCCce--EeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          220 -GQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       220 -~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                       .| ...+..+..++++..+++....+|.|.++|....+  .+..+. .......+.|+|+|+++++++..++.|.++|+
T Consensus       293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~  371 (567)
T 1qks_A          293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDT  371 (567)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence             01 12577888898667777777778999999987653  233332 34457789999999999887767899999999


Q ss_pred             ccceee
Q 022019          296 RKAVQV  301 (304)
Q Consensus       296 ~~~~~~  301 (304)
                      .+++.+
T Consensus       372 ~t~kl~  377 (567)
T 1qks_A          372 KEGKLV  377 (567)
T ss_dssp             TTTEEE
T ss_pred             CCCcEE
Confidence            998654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.64  E-value=1.5e-15  Score=124.83  Aligned_cols=202  Identities=9%  Similarity=0.028  Sum_probs=127.1

Q ss_pred             ceeEEEEcCCCCeEEEecCC---CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           62 FLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      .+.+++|+|||++|+.+...   ..|.+||+.+++...                 + ........      ....++|+|
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-----------------l-~~~~~~~~------~~~~~spdg   92 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-----------------L-TEGKGDNT------FGGFISTDE   92 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-----------------C-CCSSCBCT------TTCEECTTS
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-----------------e-ecCCCCcc------ccceECCCC
Confidence            37889999999998776442   368888887543210                 0 00001110      012458999


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEE----------------EEECCCCcEEEE------EcCCeE
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFS----------------VAFNPTGTKIFA------GYNKSV  196 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~----------------i~~~~~~~~l~~------~~d~~i  196 (304)
                      +.|+.++.++.|++||+.+++.......+.....  .-..                +.|+|+++.++.      ..+..|
T Consensus        93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~--~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l  170 (396)
T 3c5m_A           93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKG--YGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL  170 (396)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEE--EEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred             CEEEEEEcCCcEEEEECCCCCcEEEEecccccCC--CCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence            9999999999999999998876655543322000  0001                356788877662      355689


Q ss_pred             EEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC------CeEEEEecCCceEeEEeccc--cCCe
Q 022019          197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMELLYVLHGQ--EGGV  268 (304)
Q Consensus       197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~--~~~v  268 (304)
                      ++||+..+..     ..+    ..+...+..+.|+|+++..|+..+.+      ..|.+||+..++.. .+..+  ...+
T Consensus       171 ~~~d~~~g~~-----~~~----~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~  240 (396)
T 3c5m_A          171 IKVDIETGEL-----EVI----HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESC  240 (396)
T ss_dssp             EEEETTTCCE-----EEE----EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEE
T ss_pred             EEEECCCCcE-----Eee----ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccc
Confidence            9999876321     111    12344578899999434445544433      36888998765433 33323  2358


Q ss_pred             EEEEECCCCcEEEEeeccC-----CeEEEEeccccee
Q 022019          269 THVQFSRDGNYLYTGGRKD-----PYILCWDLRKAVQ  300 (304)
Q Consensus       269 ~~~~~~~~~~~l~~~~~~d-----~~i~vwd~~~~~~  300 (304)
                      ..+.|+|||++|+.++ .+     +.|++||+.+++.
T Consensus       241 ~~~~~spdg~~l~~~~-~~~~~~~~~l~~~d~~~g~~  276 (396)
T 3c5m_A          241 THEFWIPDGSAMAYVS-YFKGQTDRVIYKANPETLEN  276 (396)
T ss_dssp             EEEEECTTSSCEEEEE-EETTTCCEEEEEECTTTCCE
T ss_pred             cceEECCCCCEEEEEe-cCCCCccceEEEEECCCCCe
Confidence            8899999999887776 33     4599999988753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=2.2e-13  Score=106.22  Aligned_cols=194  Identities=12%  Similarity=0.079  Sum_probs=137.1

Q ss_pred             CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCE
Q 022019           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI  150 (304)
Q Consensus        71 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i  150 (304)
                      .++.|++++.|+.|.+||.++++........                ....       ++.+.++|+|++++  +.++.|
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~----------------~~~~-------~~~~~~~pdG~ilv--s~~~~V   58 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLE----------------KGWE-------CNSVAATKAGEILF--SYSKGA   58 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECC----------------TTCC-------CCEEEECTTSCEEE--ECBSEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCC----------------ccCC-------CcCeEECCCCCEEE--eCCCCE
Confidence            4678999999999999999877554332211                0012       23334588999888  356789


Q ss_pred             EEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-c-CCeEEEEEcCCCCccceeeeeeeccccccccceeEE
Q 022019          151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y-NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI  228 (304)
Q Consensus       151 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~  228 (304)
                      +.||. +++.+..+.....    ..+.++.+.|+|+++++. . ++.|..+|..  ++....+. +......+......+
T Consensus        59 ~~~d~-~G~~~W~~~~~~~----~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~-~~~~~~~~~~~~~~v  130 (276)
T 3no2_A           59 KMITR-DGRELWNIAAPAG----CEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTE-FETGIERPHAQFRQI  130 (276)
T ss_dssp             EEECT-TSCEEEEEECCTT----CEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEE-ECCSCSSGGGSCSCC
T ss_pred             EEECC-CCCEEEEEcCCCC----ccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEe-ccCCCCcccccccCc
Confidence            99998 7888887776321    267789999999999965 4 6667777652  33222221 111111222345566


Q ss_pred             EeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       229 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      ++.+ ++.++++...++.|..||.. ++.+.++... ....++.+.++|..+++++ .+++|..+|..+|+.+
T Consensus       131 ~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~-~~~~v~~~d~~tG~~~  199 (276)
T 3no2_A          131 NKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACG-DAHCFVQLNLESNRIV  199 (276)
T ss_dssp             EECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECB-TTSEEEEECTTTCCEE
T ss_pred             eECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeC-CCCeEEEEeCcCCcEE
Confidence            7888 77799999999999999997 9998888754 4456788899999999888 7889999999988764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.64  E-value=9.8e-14  Score=112.02  Aligned_cols=186  Identities=10%  Similarity=0.084  Sum_probs=119.1

Q ss_pred             CceeEEEEcCCCCeEEEecCC---Ce--EEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC
Q 022019           61 NFLKGIKWSPDGSSFLTSSED---KT--LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~d---g~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (304)
                      ..+..++|+|||++|+.++.+   +.  |.+|++.+++.                 . ....... +..+.|       +
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~-----------------~-~l~~~~~-~~~~~w-------s  112 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS-----------------K-KILEAKN-IRSLEW-------N  112 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE-----------------E-EEEEESE-EEEEEE-------C
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce-----------------E-EEEcCCC-ccceeE-------C
Confidence            458889999999999887653   33  66777764321                 1 1111222 666766       8


Q ss_pred             CCccEEEEEeCC---------------------------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEE
Q 022019          136 PTSCVFASTTRD---------------------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI  188 (304)
Q Consensus       136 ~~~~~l~~~~~d---------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  188 (304)
                      |+|+.|+.++.+                           ..|++||+.+++....+.. .      .+..+.|+|+| ++
T Consensus       113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~------~~~~~~~spdg-~~  184 (347)
T 2gop_A          113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P------RFSSGIWHRDK-IV  184 (347)
T ss_dssp             TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E------TTCEEEEETTE-EE
T ss_pred             CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C------CcccccCCCCe-EE
Confidence            899888887642                           5699999998876344433 1      46689999999 66


Q ss_pred             EEE-cC------C-eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC--------CeEEEEec
Q 022019          189 FAG-YN------K-SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS--------QTSAIYRE  252 (304)
Q Consensus       189 ~~~-~d------~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~i~d~  252 (304)
                      +++ .+      . ...||.+.. +. .   ..+.    .+ ..+..+  +| ++..|+.++.+        ..|.+|| 
T Consensus       185 ~~~~~~~~~~~~~~~~~l~~~d~-~~-~---~~l~----~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d-  250 (347)
T 2gop_A          185 VNVPHREIIPQYFKFWDIYIWED-GK-E---EKMF----EK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD-  250 (347)
T ss_dssp             EEEECCCSSCCSSCCEEEEEEET-TE-E---EEEE----EE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC-
T ss_pred             EEEecccccccccccccEEEeCC-Cc-e---EEec----cC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC-
Confidence            655 33      2 445555442 21 1   1111    11 234443  89 55555555533        4688888 


Q ss_pred             CCceEeEEeccccCCeEE-EEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          253 DNMELLYVLHGQEGGVTH-VQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       253 ~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                       +++.......+...+.. +.|+ +| ++++++ .++.++|| +.+++
T Consensus       251 -~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~-~~~~~~l~-~~~g~  293 (347)
T 2gop_A          251 -GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLF-EEGSVNLY-IWDGE  293 (347)
T ss_dssp             -SSCEEESSTTCCSEEEEEEEET-TE-EEEEEE-ETTEEEEE-EESSS
T ss_pred             -CCceEeccccCCcccCCccEEc-Cc-EEEEEe-cCCcEEEE-EcCCc
Confidence             55555445566777886 9999 88 888888 89999999 87543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.62  E-value=2.7e-14  Score=117.35  Aligned_cols=215  Identities=12%  Similarity=0.077  Sum_probs=125.8

Q ss_pred             eeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEE
Q 022019           63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (304)
Q Consensus        63 V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (304)
                      ...+.|+|||++|+.++.++.|.+||+.+++.........   ........+..........  .......++|+++.++
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~---~~~~~g~~l~~~~~~~~~~--~~~~~~~~spdg~~~~  157 (396)
T 3c5m_A           83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDE---EWKGYGTWVANSDCTKLVG--IEILKRDWQPLTSWEK  157 (396)
T ss_dssp             TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT---TEEEEEEEEECTTSSEEEE--EEEEGGGCCCCCSHHH
T ss_pred             cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc---ccCCCCCEEEeccCCcccc--ccccccccCCCCccee
Confidence            3448899999999999999999999998654321111000   0000000000000000000  0001135578888776


Q ss_pred             EE-----eCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECC-CCcEEE-EEcC------CeEEEEEcCCCCccce
Q 022019          143 ST-----TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIF-AGYN------KSVRVFDVHRPGRDFE  209 (304)
Q Consensus       143 ~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~-~~~d------~~i~v~d~~~~~~~~~  209 (304)
                      .+     ..+..|++||+.+++....... .     ..+..+.|+| ++..|+ ++.+      ..|.+||+....  . 
T Consensus       158 ~~~~~~~~~~~~l~~~d~~~g~~~~~~~~-~-----~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~-  228 (396)
T 3c5m_A          158 FAEFYHTNPTCRLIKVDIETGELEVIHQD-T-----AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--V-  228 (396)
T ss_dssp             HHHHHHTCCCEEEEEEETTTCCEEEEEEE-S-----SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--C-
T ss_pred             eeeeccCCCcceEEEEECCCCcEEeeccC-C-----cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc--e-
Confidence            54     3567899999998876554432 2     2678999999 788776 4432      468888875421  1 


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecC-----CeEEEEecCCceEeEEeccccCCeEEEEECC-CCcEEEEe
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMELLYVLHGQEGGVTHVQFSR-DGNYLYTG  283 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  283 (304)
                        ..+..  ......+..++|+| ++..|+.++.+     +.|++||+.+++...... .. ... +.|+| ||++++++
T Consensus       229 --~~l~~--~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~  300 (396)
T 3c5m_A          229 --RKIKE--HAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGD  300 (396)
T ss_dssp             --EESSC--CCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEE
T ss_pred             --eEeec--cCCCccccceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEe
Confidence              11111  11123477899999 45545444433     449999998876433222 11 233 89999 99988875


Q ss_pred             ec---------------cCCeEEEEecccce
Q 022019          284 GR---------------KDPYILCWDLRKAV  299 (304)
Q Consensus       284 ~~---------------~d~~i~vwd~~~~~  299 (304)
                      +.               .++.|++||+.+++
T Consensus       301 ~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          301 GCDAPVDVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             ECCC----------CCCCCCEEEEEETTTTB
T ss_pred             cCCcceeeccccccccCCCCcEEEEecccCc
Confidence            41               24789999998765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.62  E-value=1.8e-13  Score=109.63  Aligned_cols=205  Identities=9%  Similarity=-0.021  Sum_probs=129.3

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      ......+++++++..+++...++.|.+||..+++....+...... .           ...       .|..+++ .++.
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~-~-----------~~~-------~p~~i~~-~~~~  142 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD-M-----------ESG-------STEQMVQ-YGKY  142 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC-T-----------TTC-------BCCCEEE-ETTE
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc-c-----------cCC-------CcceEEE-ECCE
Confidence            456889999999855555548999999999866442211110000 0           000       1222233 2444


Q ss_pred             EEEEEe-CCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC----------CeEEEEEcCCCCcc
Q 022019          140 VFASTT-RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN----------KSVRVFDVHRPGRD  207 (304)
Q Consensus       140 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d----------~~i~v~d~~~~~~~  207 (304)
                      ++++.. .++.|.++|+.+++....+....      ....+.++|+|++++++ .+          +.|.++|..+..  
T Consensus       143 lyv~~~~~~~~v~viD~~t~~~~~~i~~g~------~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--  214 (328)
T 3dsm_A          143 VYVNCWSYQNRILKIDTETDKVVDELTIGI------QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--  214 (328)
T ss_dssp             EEEEECTTCCEEEEEETTTTEEEEEEECSS------CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--
T ss_pred             EEEEcCCCCCEEEEEECCCCeEEEEEEcCC------CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe--
Confidence            455444 48899999999998877776533      44688999999977765 33          789999987631  


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEE--eccccCCeEEEEECCCCcEEEEee-
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV--LHGQEGGVTHVQFSRDGNYLYTGG-  284 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-  284 (304)
                        ....+.   .........++|+| ++..|+++..  .|.+||..+++....  +.........++++|++..|+.+. 
T Consensus       215 --v~~~~~---~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~  286 (328)
T 3dsm_A          215 --VEKQFK---FKLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADA  286 (328)
T ss_dssp             --EEEEEE---CCTTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEEC
T ss_pred             --EEEEEe---cCCCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcc
Confidence              111111   11112478999999 4555655543  899999988765321  222245689999999544444443 


Q ss_pred             ---ccCCeEEEEecccceee
Q 022019          285 ---RKDPYILCWDLRKAVQV  301 (304)
Q Consensus       285 ---~~d~~i~vwd~~~~~~~  301 (304)
                         ..++.|.+||.. ++.+
T Consensus       287 ~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          287 IDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             TTSSSEEEEEEECTT-CCEE
T ss_pred             cccccCCEEEEECCC-CCEE
Confidence               278999999997 6544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=3.3e-13  Score=119.37  Aligned_cols=203  Identities=12%  Similarity=0.069  Sum_probs=135.5

Q ss_pred             eeEEEEcCCCCeEEEecCCCe----------------EEEeeCCCCCCccccccccccccCCccceEEEee--cCCeEEE
Q 022019           63 LKGIKWSPDGSSFLTSSEDKT----------------LRIFSLPENGISYDVNACSLAKDQDSYEASLVVT--EGESVYD  124 (304)
Q Consensus        63 V~~i~~s~~~~~l~s~~~dg~----------------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~  124 (304)
                      +..++|+|||+.|+.++.++.                |.+|++.++....               ..+...  +...+..
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~---------------~~v~~~~~~~~~~~~  237 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED---------------ILCAEFPDEPKWMGG  237 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC---------------EEEECCTTCTTCEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc---------------eEEeccCCCCeEEEE
Confidence            678999999999998887765                9999987543110               001111  1223445


Q ss_pred             EeecCccceeCCCccEEEEEeC-----CCCEEEEEcCC------Ce-eeEEeecccccccccceEEEEECCCCcEEE-EE
Q 022019          125 FCWFPHMSASDPTSCVFASTTR-----DHPIHLWDATT------GL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG  191 (304)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~  191 (304)
                      +.|       +|+|++|+.++.     +..|++||+.+      +. ....+..+..     .+.. .|+|+|..|+ .+
T Consensus       238 ~~~-------SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~-----~~~~-~~s~dg~~l~~~s  304 (710)
T 2xdw_A          238 AEL-------SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE-----GEYD-YVTNEGTVFTFKT  304 (710)
T ss_dssp             EEE-------CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-----SCEE-EEEEETTEEEEEE
T ss_pred             EEE-------cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC-----cEEE-EEeccCCEEEEEE
Confidence            555       889999888765     56899999976      43 2333443322     3333 4888888877 44


Q ss_pred             c----CCeEEEEEcCCCCccceeeeeeeccccccc-cceeEEEeecCCCcEEEEEecCCe--EEEEecCCceEeEEeccc
Q 022019          192 Y----NKSVRVFDVHRPGRDFEKYSTLKGNKEGQA-GIMSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQ  264 (304)
Q Consensus       192 ~----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~  264 (304)
                      .    ...|.+||+..+...  ....+.   .... ..+..++|++ ++.++++...++.  |++||+.+++.+..+..+
T Consensus       305 ~~~~~~~~l~~~d~~~~~~~--~~~~l~---~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~  378 (710)
T 2xdw_A          305 NRHSPNYRLINIDFTDPEES--KWKVLV---PEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE  378 (710)
T ss_dssp             CTTCTTCEEEEEETTSCCGG--GCEEEE---CCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCEEEEECCC
T ss_pred             CCCCCCCEEEEEeCCCCCcc--cceecc---CCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCEEEecCCC
Confidence            3    236999998764211  112221   1112 3577899997 7788899998985  566787677777788877


Q ss_pred             cCCeEEEEECCCCcEEEEee---ccCCeEEEEecccce
Q 022019          265 EGGVTHVQFSRDGNYLYTGG---RKDPYILCWDLRKAV  299 (304)
Q Consensus       265 ~~~v~~~~~~~~~~~l~~~~---~~d~~i~vwd~~~~~  299 (304)
                      .+.+..+.++|++..|+...   ...++|.+||+.+++
T Consensus       379 ~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          379 VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            77899999999997666332   145789999998876

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.61  E-value=1e-13  Score=111.97  Aligned_cols=183  Identities=12%  Similarity=0.066  Sum_probs=127.6

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      .++.+++++...++++|+.++ +++|++++.......      .... ........... |+.++|         ++.+|
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~------~~~~-~~~~~~~~lp~-V~~l~f---------d~~~L  100 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS------DSTP-LTFKWEKEIPD-VIFVCF---------HGDQV  100 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS------SSCC-CCCSEEEECTT-EEEEEE---------ETTEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcc------cccc-ccceEEeeCCC-eeEEEE---------CCCEE
Confidence            689999999999999999885 666987533210000      0000 11112333445 777766         67788


Q ss_pred             EEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeecccccc
Q 022019          142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ  221 (304)
Q Consensus       142 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~  221 (304)
                      +++ .++.|++||+.+.........+..     .+.++.+.+.. ++++..||.+.+||+.....  .   .       +
T Consensus       101 ~v~-~~~~l~v~dv~sl~~~~~~~~~~~-----~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~--~---~-------~  161 (388)
T 1xip_A          101 LVS-TRNALYSLDLEELSEFRTVTSFEK-----PVFQLKNVNNT-LVILNSVNDLSALDLRTKST--K---Q-------L  161 (388)
T ss_dssp             EEE-ESSEEEEEESSSTTCEEEEEECSS-----CEEEEEECSSE-EEEEETTSEEEEEETTTCCE--E---E-------E
T ss_pred             EEE-cCCcEEEEEchhhhccCccceeec-----ceeeEEecCCC-EEEEECCCCEEEEEccCCcc--c---c-------c
Confidence            888 889999999987654444444333     67787777653 33356999999999986321  1   1       2


Q ss_pred             ccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE--eEEe------c---cccCCeEEEEECCCCcEEEEee
Q 022019          222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL--LYVL------H---GQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       222 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      ...|++++|+| .+  ++.|..||.+++|+......  ..++      .   +|...|.++.|.+++.++++=+
T Consensus       162 ~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          162 AQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             cCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            34699999999 55  67899999999999887765  5556      2   3678899999999999988643

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.59  E-value=6.2e-13  Score=103.40  Aligned_cols=198  Identities=9%  Similarity=0.030  Sum_probs=130.4

Q ss_pred             ceeEEEEcCCCCeEE-EecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccE
Q 022019           62 FLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (304)
                      ...+++++++|++++ +.+.++.|.+|+..+......                 .....       ..|..+++++++++
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~~-------~~p~~i~~~~~g~l   80 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-----------------PFNGL-------YQPQGLAVDGAGTV   80 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-----------------CCCSC-------CSCCCEEECTTCCE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-----------------eeCCc-------CCcceeEECCCCCE
Confidence            678999999999777 547788999998754321100                 00000       12344556888886


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeecccc
Q 022019          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (304)
Q Consensus       141 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~  219 (304)
                      +++.. ++.|.+||....... .+....    ...+.+++++|+|+++++. .++.|.+|+......  .  . .   ..
T Consensus        81 ~v~~~-~~~i~~~d~~~~~~~-~~~~~~----~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~--~-~---~~  146 (270)
T 1rwi_B           81 YVTDF-NNRVVTLAAGSNNQT-VLPFDG----LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--T--V-L---PF  146 (270)
T ss_dssp             EEEET-TTEEEEECTTCSCCE-ECCCCS----CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC--E--E-C---CC
T ss_pred             EEEcC-CCEEEEEeCCCceEe-eeecCC----cCCCcceEECCCCCEEEEECCCCEEEEEECCCcee--E--e-e---cc
Confidence            66665 889999998765432 222111    1267899999999877765 788999997543211  0  0 0   01


Q ss_pred             ccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       220 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      .....+.+++++| ++.++++...++.|.+||............+...+.+++++++|..+++.. .++.|.+|+.....
T Consensus       147 ~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          147 TGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTT  224 (270)
T ss_dssp             CSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTSCEEEECTTCSC
T ss_pred             ccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-CCCcEEEEcCCCCc
Confidence            2223467899999 566777777788999999877655443333336789999999997666665 78899999986643

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.59  E-value=4.9e-12  Score=102.81  Aligned_cols=216  Identities=13%  Similarity=0.074  Sum_probs=123.9

Q ss_pred             EEEEcCCCCeEEEec----------CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           65 GIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        65 ~i~~s~~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .++++|||++++.+.          .++.|.+||..+.+....+....               . .... ..-.|..+++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~---------------~-~~~~-~g~~p~~~~~  132 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD---------------A-PRFD-VGPYSWMNAN  132 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC---------------c-cccc-cCCCccceEE
Confidence            899999999988875          36789999997654432211100               0 0000 0012445566


Q ss_pred             CCCccEEEEEeC--CCCEEEEEcCCCeeeEE-eecccccc---cccc-------------------e-------------
Q 022019          135 DPTSCVFASTTR--DHPIHLWDATTGLLRCT-YRAYDAVD---EITA-------------------A-------------  176 (304)
Q Consensus       135 ~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~---~~~~-------------------v-------------  176 (304)
                      +|+|++|++++.  ++.|.++| .+++.... +.......   ....                   +             
T Consensus       133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~  211 (373)
T 2mad_H          133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA  211 (373)
T ss_pred             CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCC
Confidence            999999888874  47899999 88887766 54322100   0000                   0             


Q ss_pred             ----EEEEECCCCcE-EEEEcCCeEEEEEcCCCCccceeeeeeecc------ccccccceeEEEeecCCCcEEEEEe---
Q 022019          177 ----FSVAFNPTGTK-IFAGYNKSVRVFDVHRPGRDFEKYSTLKGN------KEGQAGIMSAIAFSPTHTGMLAIGS---  242 (304)
Q Consensus       177 ----~~i~~~~~~~~-l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~p~~~~~l~~~~---  242 (304)
                          ....+.+++.. ++++..+.+.+.|+.......  ...+...      ..-.......+.++|+++.++++..   
T Consensus       212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v--~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~  289 (373)
T 2mad_H          212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN--KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS  289 (373)
T ss_pred             cceeecceeEecCCEEEEEcCCceEEEEeccCCcceE--eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCC
Confidence                00111222222 222334455555554321110  0111000      0001122334788995554444433   


Q ss_pred             ------cCCeEEEEecCCceEeEEeccccCCeEEEEECCCCc-EEEEeeccCCeEEEEecccceee
Q 022019          243 ------YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       243 ------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                            ..+.|.++|+.+++.+.++.. .....++.|+|||+ .++++...++.|.+||+.+++.+
T Consensus       290 ~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          290 AWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             cccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence                  135799999999999999864 34579999999999 67776634899999999998765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.59  E-value=3.6e-13  Score=118.81  Aligned_cols=199  Identities=13%  Similarity=0.029  Sum_probs=126.7

Q ss_pred             CCCCceeEEEEcCCCCeEE-----EecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           58 IPNNFLKGIKWSPDGSSFL-----TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~-----s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      +|...+.+++|||||++||     .|+.+..|++||+.+++......                .. ......++|     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~----------------~~-~~~~~~~~w-----  175 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV----------------IE-GGKYATPKW-----  175 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC----------------BS-CCTTCCCEE-----
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc----------------cC-cccccceEE-----
Confidence            5666799999999999998     44556789999999775420000                00 000123444     


Q ss_pred             eeCCCccEEEEEeCCCC-------------EEEEEcCCCeee--EEeecccccccccceEEEEECCCCcEEE-EEcCC--
Q 022019          133 ASDPTSCVFASTTRDHP-------------IHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNK--  194 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~--  194 (304)
                        +|||+.|+.++.|..             |++|++.++...  ..+...   .+...+.++.|+|||++|+ ++.++  
T Consensus       176 --spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~---~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          176 --TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT---GDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             --CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC---CCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             --ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC---CCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence              889999999988776             999999887632  222221   1222678999999999888 44444  


Q ss_pred             --eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEe---cCCeEEEEecCCceE---eEEeccc-c
Q 022019          195 --SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNMEL---LYVLHGQ-E  265 (304)
Q Consensus       195 --~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~-~  265 (304)
                        .|+++|...  ....   .+.    .+...+....+ |+++ +++...   .++.|.+||+.++..   ...+..+ .
T Consensus       251 ~~~l~~~~~~~--~~~~---~l~----~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  319 (695)
T 2bkl_A          251 ENDVYWKRPGE--KDFR---LLV----KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSS  319 (695)
T ss_dssp             EEEEEEECTTC--SSCE---EEE----ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSS
T ss_pred             ceEEEEEcCCC--CceE---Eee----cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCC
Confidence              556665432  2222   221    12223445556 5355 555554   257899999977653   2233323 4


Q ss_pred             CCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       266 ~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      ..+..++|+ ++.++++.. .|+..+||.+.
T Consensus       320 ~~l~~~~~~-~~~lv~~~~-~dg~~~l~~~~  348 (695)
T 2bkl_A          320 ASLLSVSIV-GGHLSLEYL-KDATSEVRVAT  348 (695)
T ss_dssp             CEEEEEEEE-TTEEEEEEE-ETTEEEEEEEE
T ss_pred             CeEEEEEEE-CCEEEEEEE-ECCEEEEEEEe
Confidence            468888998 677777777 89988888765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.59  E-value=5.4e-12  Score=100.26  Aligned_cols=160  Identities=11%  Similarity=0.169  Sum_probs=108.6

Q ss_pred             CccceeCCCccEEEEEeCC---------------CCEEEEEcCCCeeeEEeecccccccccceEEEEEC----CCCcEEE
Q 022019          129 PHMSASDPTSCVFASTTRD---------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN----PTGTKIF  189 (304)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~l~  189 (304)
                      |..++++++|+++++...+               +.|..+|.. ++........      .....++|+    |+++.++
T Consensus       119 ~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~------~~~~~i~~~~~~d~dg~~l~  191 (314)
T 1pjx_A          119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF------QFPNGIAVRHMNDGRPYQLI  191 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE------SSEEEEEEEECTTSCEEEEE
T ss_pred             CcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCC------CCcceEEEecccCCCCCEEE
Confidence            4456678899888777655               567777765 5443322211      145789999    9997766


Q ss_pred             -EE-cCCeEEEEEcCCCCccceeeeeeeccccccc-cceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC
Q 022019          190 -AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA-GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG  266 (304)
Q Consensus       190 -~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  266 (304)
                       +. .++.|.+||+...+. ........ ....+. ..+..+++++ ++.++++...++.|.+||..+++.+..+..+..
T Consensus       192 v~~~~~~~i~~~~~~~~g~-~~~~~~~~-~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~  268 (314)
T 1pjx_A          192 VAETPTKKLWSYDIKGPAK-IENKKVWG-HIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE  268 (314)
T ss_dssp             EEETTTTEEEEEEEEETTE-EEEEEEEE-ECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSS
T ss_pred             EEECCCCeEEEEECCCCCc-cccceEEE-ECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCC
Confidence             44 678999999862111 11111111 112222 4577899999 677777777789999999987777777776667


Q ss_pred             CeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       267 ~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      .+.+++|+|+|++|+.++..++.|..|++...
T Consensus       269 ~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          269 KPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            89999999999966666536789999998753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.58  E-value=8.8e-13  Score=107.00  Aligned_cols=206  Identities=12%  Similarity=0.126  Sum_probs=126.3

Q ss_pred             CceeEEEEcCCCCeEEEecC--CCeEEEeeCCCCCCccc-cccccc-----ccc---------CCccceEEEeecCCeEE
Q 022019           61 NFLKGIKWSPDGSSFLTSSE--DKTLRIFSLPENGISYD-VNACSL-----AKD---------QDSYEASLVVTEGESVY  123 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~--dg~v~vwd~~~~~~~~~-~~~~~~-----~~~---------~~~~~~~~~~~~~~~v~  123 (304)
                      .....++|+|||++|+++..  +++|.+||+.+++.... +.....     ...         .+.....+.......+.
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~  187 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA  187 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence            45778999999999998863  68999999998766544 221110     000         00111111111111111


Q ss_pred             EE-----eec----CccceeCCCccEEEEEeCCCCEEEEEcCCCeee--EEeecccc--cc---cccceEEEEECCCCcE
Q 022019          124 DF-----CWF----PHMSASDPTSCVFASTTRDHPIHLWDATTGLLR--CTYRAYDA--VD---EITAAFSVAFNPTGTK  187 (304)
Q Consensus       124 ~~-----~~~----~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~--~~---~~~~v~~i~~~~~~~~  187 (304)
                      ..     .|.    |....+++++..++..+.++.|.++|+..+...  ..+.....  ..   .......++|+|+++.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~  267 (361)
T 2oiz_A          188 SQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGR  267 (361)
T ss_dssp             EEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTE
T ss_pred             eeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCe
Confidence            00     111    112233456667777778899999998755422  22221110  00   0011223789999888


Q ss_pred             EEEE-c-----------CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc
Q 022019          188 IFAG-Y-----------NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM  255 (304)
Q Consensus       188 l~~~-~-----------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~  255 (304)
                      +++. .           .+.|.+||+.+.    +.+..+    ..+.  +.+++|+| ++++|++++. +.|.+||..++
T Consensus       268 lyv~~~~~~~~~~~~~~~~~v~viD~~t~----~~v~~i----~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          268 MYVFMHPDGKEGTHKFPAAEIWVMDTKTK----QRVARI----PGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEEEEESSCCTTCTTCCCSEEEEEETTTT----EEEEEE----ECTT--CCEEEEET-TTTEEEEECS-SCEEEEECSSS
T ss_pred             EEEEEccCCCcccccCCCceEEEEECCCC----cEEEEE----ecCC--eeEEEECC-CCCEEEEeCC-CeEEEEECCCC
Confidence            8854 3           348999999874    222222    2233  78999999 5667777776 99999999999


Q ss_pred             --eEeEEeccccCCeEEEEECCCCc
Q 022019          256 --ELLYVLHGQEGGVTHVQFSRDGN  278 (304)
Q Consensus       256 --~~~~~~~~~~~~v~~~~~~~~~~  278 (304)
                        +.+.++..+......++++|+|+
T Consensus       336 ~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          336 EPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             cceeeEEeccCCCCcEEEEecCCCC
Confidence              99999866777789999999986

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.57  E-value=2.4e-12  Score=103.65  Aligned_cols=217  Identities=12%  Similarity=0.133  Sum_probs=126.7

Q ss_pred             EEEEcCCCCeEEEec----------CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           65 GIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        65 ~i~~s~~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .++++|||++++++.          .++.|.+||..+.+....+...                .+... ..--.|..+++
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~----------------~g~r~-~~g~~P~~~a~  144 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP----------------DAPRF-LVGTYPWMTSL  144 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET----------------TCCCC-CBSCCGGGEEE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECC----------------Ccccc-ccCCCCceEEE
Confidence            499999999887765          3678999999876543322110                00000 00113445566


Q ss_pred             CCCccEEEEEeC--CCCEEEEEcCCCeeeEEeeccccc------------------------cc---------------c
Q 022019          135 DPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAV------------------------DE---------------I  173 (304)
Q Consensus       135 ~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~------------------------~~---------------~  173 (304)
                      +|||++++++..  ++.|.++|+.+++.+.++......                        ..               .
T Consensus       145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~  224 (386)
T 3sjl_D          145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED  224 (386)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT
T ss_pred             cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccc
Confidence            777776666653  466777777776665555431100                        00               0


Q ss_pred             cce-EEEEE-CCCCcEEEEEcCCeEEEEEcCCCCccceeeeeee--c---c-ccccccceeEEEeecCCCcEEEEEec--
Q 022019          174 TAA-FSVAF-NPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK--G---N-KEGQAGIMSAIAFSPTHTGMLAIGSY--  243 (304)
Q Consensus       174 ~~v-~~i~~-~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~--~---~-~~~~~~~v~~~~~~p~~~~~l~~~~~--  243 (304)
                      ..+ ....| .++|++++++.+|.|++.|+.......  ...+.  .   . ..-.......++++|++++++++-..  
T Consensus       225 ~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v--~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~  302 (386)
T 3sjl_D          225 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF--LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD  302 (386)
T ss_dssp             SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEE--CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC
T ss_pred             ccccccceeEcCCCcEEEEeCCCEEEEEECCCCccee--ecceeccccccccccccCCCcceeeECCCCCeEEEEecccc
Confidence            000 01233 245555556666777777775422111  11110  0   0 00011234457889955544444332  


Q ss_pred             -------CCeEEEEecCCceEeEEeccccCCeEEEEECCCCc-EEEEeeccCCeEEEEecccceee
Q 022019          244 -------SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       244 -------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                             .+.|.++|+.+++.+..+.. ...+.++.++||++ +|+++...++.|.++|..+++.+
T Consensus       303 ~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          303 EWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             TTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             ccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence                   25799999999999999874 34678999999997 77776646999999999998765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.56  E-value=1.2e-11  Score=105.67  Aligned_cols=203  Identities=7%  Similarity=0.017  Sum_probs=134.7

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCC--CCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC----
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLP--ENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD----  135 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----  135 (304)
                      .+..+.|+|||+++++++.|+.|.+||+.  +.+..                  ..+..+.....       ++++    
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v------------------~~i~~G~~P~~-------ia~s~~~~  252 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV------------------AEIKIGSEARS-------IETSKMEG  252 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE------------------EEEECCSEEEE-------EEECCSTT
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe------------------EEEecCCCCce-------eEEccccC
Confidence            46789999999999999999999999985  33221                  11111222333       4557    


Q ss_pred             CCccEEEEEeC-CCCEEEEEcCCCeeeEEeeccccc------ccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCc
Q 022019          136 PTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAV------DEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGR  206 (304)
Q Consensus       136 ~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~------~~~~~v~~i~~~~~~~~l~~~--~d~~i~v~d~~~~~~  206 (304)
                      |+|+++++++. +++|.++|..+.+.+..+......      .....+..+..++++..++..  .+|.|.++|......
T Consensus       253 pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~  332 (567)
T 1qks_A          253 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN  332 (567)
T ss_dssp             CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred             CCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc
Confidence            69988877765 589999999999888777643210      011257788999987776643  779999999875321


Q ss_pred             cceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc-----ccCCeEEEEECCCCcEEE
Q 022019          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-----QEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~  281 (304)
                       . ....+     ........+.|+|++..++++...++.|.++|+.+++.+..+..     |.+.-..+ ++|++..++
T Consensus       333 -~-~v~~i-----~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~  404 (567)
T 1qks_A          333 -L-KTTEI-----SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVW  404 (567)
T ss_dssp             -E-EEEEE-----ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEE
T ss_pred             -c-eeeee-----eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEE
Confidence             1 11111     11233567899995444455555689999999999988776654     32222222 588855554


Q ss_pred             -EeeccCCeEEEEeccc
Q 022019          282 -TGGRKDPYILCWDLRK  297 (304)
Q Consensus       282 -~~~~~d~~i~vwd~~~  297 (304)
                       ++...++.|.++|..+
T Consensus       405 ~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          405 ATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEBSSSSEEEEEECCT
T ss_pred             EeCCCCCCeEEEecCCC
Confidence             4432468999999987

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.56  E-value=4.1e-12  Score=98.95  Aligned_cols=206  Identities=9%  Similarity=0.031  Sum_probs=139.6

Q ss_pred             ceeeecCCCcccccccceeeeecCCC-CceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPN-NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (304)
                      .+..|+..+.+...      .+..+. ..+.++.++|+|++|++  .++.|..||. +++.......             
T Consensus        16 ~v~~~d~~tG~~~w------~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~-------------   73 (276)
T 3no2_A           16 KIAIINKDTKEIVW------EYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAA-------------   73 (276)
T ss_dssp             EEEEEETTTTEEEE------EEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEEC-------------
T ss_pred             EEEEEECCCCeEEE------EeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcC-------------
Confidence            34556655555443      333444 46889999999998883  4778999998 5554333221             


Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEeC-CCCEEEEEcCCCeeeEEeeccccc-ccccceEEEEECCCCcEEEEE
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAV-DEITAAFSVAFNPTGTKIFAG  191 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~  191 (304)
                         .....+.+..+       .++|+++++.+. ++.|..+|. +++.+..+...... ........+.+.++|+++++.
T Consensus        74 ---~~~~~~~~~~~-------~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~  142 (276)
T 3no2_A           74 ---PAGCEMQTARI-------LPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL  142 (276)
T ss_dssp             ---CTTCEEEEEEE-------CTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred             ---CCCccccccEE-------CCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEe
Confidence               11123444443       789999999887 777888885 67776666543211 111245567889999999976


Q ss_pred             -cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc-----
Q 022019          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-----  265 (304)
Q Consensus       192 -~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----  265 (304)
                       .++.|..||.. +.    .+.....     ...+.++.+.+ ++.++++++.++.|..+|..+++.+.++..+.     
T Consensus       143 ~~~~~v~~~d~~-G~----~~w~~~~-----~~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~  211 (276)
T 3no2_A          143 FATSEVREIAPN-GQ----LLNSVKL-----SGTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQ  211 (276)
T ss_dssp             TTTTEEEEECTT-SC----EEEEEEC-----SSCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred             cCCCEEEEECCC-CC----EEEEEEC-----CCCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence             89999999986 32    2222221     12355677788 77788888888899999999999988886432     


Q ss_pred             -CCeEEEEECCCCcEEEEee
Q 022019          266 -GGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       266 -~~v~~~~~~~~~~~l~~~~  284 (304)
                       ..+..+...++|..+++..
T Consensus       212 l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          212 LFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             CSEEEEEEECTTSCEEEEEE
T ss_pred             ccccccceEcCCCCEEEEec
Confidence             2378899999999888763

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.54  E-value=4.3e-12  Score=103.94  Aligned_cols=217  Identities=12%  Similarity=0.126  Sum_probs=132.4

Q ss_pred             EEEEcCCCCeEEEec----------CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           65 GIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        65 ~i~~s~~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+.++|||++|+++.          .++.|.++|..+.+....+..                ...... ...-.|..+.+
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v----------------~g~~r~-~~g~~P~~~~~  184 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL----------------PDAPRF-LVGTYQWMNAL  184 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE----------------TTCCCC-CBSCCGGGSEE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC----------------CCcccc-ccCCCcceEEE
Confidence            899999999888775          367899999987654322111                000000 00124667788


Q ss_pred             CCCccEEEEEeC--CCCEEEEEcCCCeeeEEeecccccc--cccceEEE-------------------------------
Q 022019          135 DPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVD--EITAAFSV-------------------------------  179 (304)
Q Consensus       135 ~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~v~~i-------------------------------  179 (304)
                      +|||++++++..  ++.|.+.|+.+++.+..+.......  ....-..+                               
T Consensus       185 spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~  264 (426)
T 3c75_H          185 TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDE  264 (426)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTS
T ss_pred             cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCC
Confidence            999999988874  5789999999998877776532100  00000112                               


Q ss_pred             ------EECCCCcEEE-EEcCCeEEEEEcCCCCccceeeeeeec---ccc---ccccceeEEEeecCCCcEEEEEec---
Q 022019          180 ------AFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKG---NKE---GQAGIMSAIAFSPTHTGMLAIGSY---  243 (304)
Q Consensus       180 ------~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~---~~~---~~~~~v~~~~~~p~~~~~l~~~~~---  243 (304)
                            .|.+++..++ +...+.+.+.|+.......  ...+..   ...   ........++++|++++++++...   
T Consensus       265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v--~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~  342 (426)
T 3c75_H          265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF--RAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE  342 (426)
T ss_dssp             CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE--CCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT
T ss_pred             ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE--eeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccc
Confidence                  2344444433 3344566666664321100  000000   000   001112237899955544544331   


Q ss_pred             ------CCeEEEEecCCceEeEEeccccCCeEEEEECCCCc-EEEEeeccCCeEEEEecccceee
Q 022019          244 ------SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       244 ------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                            ++.|.++|..+.+.+.++... .....+.|+|||+ +++++...++.|.++|+.+++.+
T Consensus       343 gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          343 WKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             TCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             ccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence                  357999999999999998743 3578999999999 88888745999999999998765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.53  E-value=5.4e-12  Score=101.02  Aligned_cols=200  Identities=10%  Similarity=-0.014  Sum_probs=132.5

Q ss_pred             CceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccE
Q 022019           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (304)
                      ....++.+. ++..+++...++.|.+||..+++....+                  ........+       ++++++++
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i------------------~~~~~p~~i-------~~~~~g~l   97 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI------------------TGFTSPRYI-------HFLSDEKA   97 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE------------------ECCSSEEEE-------EEEETTEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc------------------CCCCCCcEE-------EEeCCCeE
Confidence            346778875 4555666667899999999876543221                  112233334       44667765


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCccceeeeeeeccc
Q 022019          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       141 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                      +++...++.|.+||+.+++....+..............+++ .+++.+++.  .++.|.++|+.+..    ....+..  
T Consensus        98 yv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~----~~~~i~~--  170 (328)
T 3dsm_A           98 YVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDK----VVDELTI--  170 (328)
T ss_dssp             EEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTE----EEEEEEC--
T ss_pred             EEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCe----EEEEEEc--
Confidence            55555889999999999988777665431111113346667 344444454  38999999998641    1122211  


Q ss_pred             cccccceeEEEeecCCCcEEEEEecC----------CeEEEEecCCceEeEEeccc-cCCeEEEEECCCCcEEEEeeccC
Q 022019          219 EGQAGIMSAIAFSPTHTGMLAIGSYS----------QTSAIYREDNMELLYVLHGQ-EGGVTHVQFSRDGNYLYTGGRKD  287 (304)
Q Consensus       219 ~~~~~~v~~~~~~p~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~d  287 (304)
                         ......++++| ++++++++..+          +.|.++|..+++....+... ......++|+|++++|+++. . 
T Consensus       171 ---g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~-~-  244 (328)
T 3dsm_A          171 ---GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-N-  244 (328)
T ss_dssp             ---SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-S-
T ss_pred             ---CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-c-
Confidence               12246788999 66676666554          78999999999887777532 23679999999999999876 4 


Q ss_pred             CeEEEEeccccee
Q 022019          288 PYILCWDLRKAVQ  300 (304)
Q Consensus       288 ~~i~vwd~~~~~~  300 (304)
                       .|.+||+.+++.
T Consensus       245 -~v~~~d~~t~~~  256 (328)
T 3dsm_A          245 -DIWRMPVEADRV  256 (328)
T ss_dssp             -SEEEEETTCSSC
T ss_pred             -EEEEEECCCCce
Confidence             899999988764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.53  E-value=6.6e-11  Score=93.34  Aligned_cols=207  Identities=11%  Similarity=0.048  Sum_probs=132.5

Q ss_pred             cCCCCceeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC
Q 022019           57 SIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        57 ~~h~~~V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (304)
                      ..+..---+..|+|+ +.++++...++.|..||..++..                   ........+..+++       +
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-------------------~~~~~~~~~~~i~~-------~   62 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-------------------QRVTMDAPVSSVAL-------R   62 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-------------------EEEECSSCEEEEEE-------B
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-------------------EEEeCCCceEEEEE-------C
Confidence            344445678999995 45666777789999999875432                   11122345555555       7


Q ss_pred             CCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC---------CeEEEEEcCCCC
Q 022019          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN---------KSVRVFDVHRPG  205 (304)
Q Consensus       136 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d---------~~i~v~d~~~~~  205 (304)
                      ++|+++++ . ++.|.+||..+++.......... .....+..++++|+|+++++. ..         ..-.+|.+...+
T Consensus        63 ~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~-~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g  139 (297)
T 3g4e_A           63 QSGGYVAT-I-GTKFCALNWKEQSAVVLATVDND-KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH  139 (297)
T ss_dssp             TTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTT-CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred             CCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCC-CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence            78885554 4 55799999988875443332211 112357899999999977754 21         334555554322


Q ss_pred             ccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEec--CCce-----EeEEeccccCCeEEEEECCCCc
Q 022019          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE--DNME-----LLYVLHGQEGGVTHVQFSRDGN  278 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~--~~~~-----~~~~~~~~~~~v~~~~~~~~~~  278 (304)
                      .. ..   .    .........++|+|++..++++.+.++.|.+||+  .++.     ....+..+......++++++|.
T Consensus       140 ~~-~~---~----~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~  211 (297)
T 3g4e_A          140 HV-KK---Y----FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK  211 (297)
T ss_dssp             CE-EE---E----EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred             CE-EE---E----eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC
Confidence            11 11   1    1122336789999955556677777899999987  3443     2333444445678999999998


Q ss_pred             EEEEeeccCCeEEEEecccceee
Q 022019          279 YLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       279 ~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +.++.. .++.|..||..+++.+
T Consensus       212 lwva~~-~~~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          212 LWVACY-NGGRVIRLDPVTGKRL  233 (297)
T ss_dssp             EEEEEE-TTTEEEEECTTTCCEE
T ss_pred             EEEEEc-CCCEEEEEcCCCceEE
Confidence            777666 7889999999877654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.53  E-value=6.3e-11  Score=93.25  Aligned_cols=201  Identities=11%  Similarity=0.108  Sum_probs=136.2

Q ss_pred             cCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEe-ecCCeEEEEeecCccceeC
Q 022019           57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV-TEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        57 ~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~  135 (304)
                      ..+...+.+++++++|..+++...++.|.+||.. +....                 ... .....+..+++       +
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-----------------~~~~~~~~~~~~i~~-------~   65 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE-----------------YPLPTPDAKVMCLTI-------S   65 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-----------------EECSSTTCCEEEEEE-------C
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-----------------ecCCcccCceeeEEE-------C
Confidence            3456679999999999988877778899999976 32210                 000 01234445544       7


Q ss_pred             CCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeee
Q 022019          136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       136 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      +++.++++...++.|..||.. ++. ..+....   ....+.+++++++++++++. .++.|.+||. .+.  ..   ..
T Consensus        66 ~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~--~~---~~  134 (299)
T 2z2n_A           66 SDGEVWFTENAANKIGRITKK-GII-KEYTLPN---PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK--IR---EY  134 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECTT-SCE-EEEECSS---TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC--EE---EE
T ss_pred             CCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCC---cCCCceeeEECCCCCEEEEecCCceEEEECC-CCC--EE---Ee
Confidence            788888877778889999976 432 2232211   12267899999999888776 6789999998 321  11   11


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEE-eccccCCeEEEEECCCCcEEEEeeccCCeEEEE
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW  293 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vw  293 (304)
                      ..  ......+..++++| ++.++++...++.|..||. +++.... +......+.+++++++|...++.. .++.|.+|
T Consensus       135 ~~--~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~  209 (299)
T 2z2n_A          135 EL--PNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI-IGNKIGRI  209 (299)
T ss_dssp             EC--SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEE
T ss_pred             cC--CCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc-CCceEEEE
Confidence            11  12234578999999 6667777767789999998 5554332 333445688999999999766665 68899999


Q ss_pred             ecccce
Q 022019          294 DLRKAV  299 (304)
Q Consensus       294 d~~~~~  299 (304)
                      |. +++
T Consensus       210 ~~-~g~  214 (299)
T 2z2n_A          210 TT-SGE  214 (299)
T ss_dssp             CT-TCC
T ss_pred             CC-CCc
Confidence            98 554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.52  E-value=4e-11  Score=94.58  Aligned_cols=196  Identities=11%  Similarity=0.089  Sum_probs=122.7

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      ....+.+++++++|+++++.  ++.|.+||..++.........     ..        .....+.+++       ++|+|
T Consensus        52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~-----~~--------~~~~~~~di~-------~d~dG  109 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVD-----ND--------KKNNRFNDGK-------VDPAG  109 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECC-----TT--------CSSEEEEEEE-------ECTTS
T ss_pred             CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecC-----CC--------CCCCCCCCEE-------ECCCC
Confidence            34679999999999965543  567999998755321100000     00        0012234444       48899


Q ss_pred             cEEEEEeCC---------CCEEEEEcCC-CeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCc
Q 022019          139 CVFASTTRD---------HPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGR  206 (304)
Q Consensus       139 ~~l~~~~~d---------g~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~  206 (304)
                      +++++....         ....+|.+.. ++........      .....++|+|+++.++ +. .++.|.+||+.....
T Consensus       110 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~------~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G  183 (297)
T 3g4e_A          110 RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQV------DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTG  183 (297)
T ss_dssp             CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEE------SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTC
T ss_pred             CEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecc------ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCC
Confidence            877765322         2345555543 3332222211      1567899999998877 44 678999999852111


Q ss_pred             cceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEEC-CCCcEEEEee
Q 022019          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS-RDGNYLYTGG  284 (304)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  284 (304)
                      .......+. ........+..+++++ ++.++++....+.|..||..+++.+..+..+...+++++|. |+++.|+.++
T Consensus       184 ~~~~~~~~~-~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          184 QISNRRSVY-KLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             CEEEEEEEE-ECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             cccCcEEEE-ECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            111111111 1122334578899999 66777777778899999998899888888777789999998 8888776665

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.52  E-value=1.2e-11  Score=101.96  Aligned_cols=207  Identities=14%  Similarity=0.109  Sum_probs=132.4

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      -.....|+|+++++++++...++.|++||..++...                  .......       .|. ++++++++
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~------------------~~~~~~~-------~~~-ia~~~~g~  183 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT------------------TVHPGFK-------GGK-PAVTKDKQ  183 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE------------------EEEETCC-------BCB-CEECTTSS
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE------------------EeeccCC-------CCc-eeEecCCC
Confidence            346889999999998888778899999998754321                  1111111       122 45588999


Q ss_pred             EEEEEeCCC--CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeec
Q 022019          140 VFASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (304)
Q Consensus       140 ~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~  216 (304)
                      .|+++..++  .|.+++...+.....+..... .....+.+++++|++..|+++ .++.|+.||.....  ...+.....
T Consensus       184 ~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~-~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~--~~~~~~~~~  260 (409)
T 3hrp_A          184 RVYSIGWEGTHTVYVYMKASGWAPTRIGQLGS-TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE--VTLIKQLEL  260 (409)
T ss_dssp             EEEEEBSSTTCEEEEEEGGGTTCEEEEEECCT-TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC--EEEEEECCC
T ss_pred             cEEEEecCCCceEEEEEcCCCceeEEeeeccc-hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC--EEEEecccc
Confidence            888888766  788888876554333310000 011256789999954444434 78899999987532  111111001


Q ss_pred             cccccccc--eeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc---------------CCeEEEEECCCCcE
Q 022019          217 NKEGQAGI--MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---------------GGVTHVQFSRDGNY  279 (304)
Q Consensus       217 ~~~~~~~~--v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~  279 (304)
                        .+....  ...++|+|+++.++++-..++.|+.|+....  +..+.++.               .....++++|+|. 
T Consensus       261 --~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-  335 (409)
T 3hrp_A          261 --SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-  335 (409)
T ss_dssp             --CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-
T ss_pred             --cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-
Confidence              111111  1389999966778888788899999997643  22333222               3478999999998 


Q ss_pred             EEEeec-cCCeEEEEeccccee
Q 022019          280 LYTGGR-KDPYILCWDLRKAVQ  300 (304)
Q Consensus       280 l~~~~~-~d~~i~vwd~~~~~~  300 (304)
                      |+.+.. .+++|+.|++.+++.
T Consensus       336 lyvad~~~~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          336 FYIVDGFKGYCLRKLDILDGYV  357 (409)
T ss_dssp             EEEEETTTTCEEEEEETTTTEE
T ss_pred             EEEEeCCCCCEEEEEECCCCEE
Confidence            555554 578999999777653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.52  E-value=1.3e-10  Score=91.50  Aligned_cols=197  Identities=10%  Similarity=0.064  Sum_probs=133.1

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEee-cCCeEEEEeecCccceeCCC
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~  137 (304)
                      +...+.+++++++|..+++...++.|..|+.. +... .                .... ....+..+++       +++
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~----------------~~~~~~~~~~~~i~~-------~~~  109 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIK-E----------------YTLPNPDSAPYGITE-------GPN  109 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-E----------------EECSSTTCCEEEEEE-------CTT
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEE-E----------------EeCCCcCCCceeeEE-------CCC
Confidence            45779999999999988887778899999875 2110 0                0000 1233444544       778


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeec
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG  216 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~  216 (304)
                      +.++++...++.|..||. +++.... ....   ....+.+++++++++.+++. .++.|..||. .. . ...   .. 
T Consensus       110 g~l~v~~~~~~~i~~~d~-~g~~~~~-~~~~---~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g-~-~~~---~~-  177 (299)
T 2z2n_A          110 GDIWFTEMNGNRIGRITD-DGKIREY-ELPN---KGSYPSFITLGSDNALWFTENQNNAIGRITE-SG-D-ITE---FK-  177 (299)
T ss_dssp             SCEEEEETTTTEEEEECT-TCCEEEE-ECSS---TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC-C-EEE---EE-
T ss_pred             CCEEEEecCCceEEEECC-CCCEEEe-cCCC---CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CC-c-EEE---ee-
Confidence            888888777888999998 5544322 2111   11267899999999887776 6789999998 32 1 111   11 


Q ss_pred             cccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeE-EeccccCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       217 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                       .......+.++++++ ++.++++...++.|.+||. +++... .+..+...+.+++++++|...++.. .++.|..||.
T Consensus       178 -~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~d~  253 (299)
T 2z2n_A          178 -IPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW-GANKIGRLTS  253 (299)
T ss_dssp             -CSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEEET
T ss_pred             -CCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc-CCceEEEECC
Confidence             112234578999999 5667766666889999998 555332 2333456789999999998666665 6789999998


Q ss_pred             c
Q 022019          296 R  296 (304)
Q Consensus       296 ~  296 (304)
                      .
T Consensus       254 ~  254 (299)
T 2z2n_A          254 N  254 (299)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.51  E-value=2.5e-12  Score=113.46  Aligned_cols=202  Identities=10%  Similarity=0.005  Sum_probs=129.2

Q ss_pred             eEEEEcCCCCeEEEecCCCe-------------EEEeeCCCCCCccccccccccccCCccceEEEee--cCCeEEEEeec
Q 022019           64 KGIKWSPDGSSFLTSSEDKT-------------LRIFSLPENGISYDVNACSLAKDQDSYEASLVVT--EGESVYDFCWF  128 (304)
Q Consensus        64 ~~i~~s~~~~~l~s~~~dg~-------------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~  128 (304)
                      ..++|+|||+.|+.++.|..             |++|++.++....               ..+...  +...+..+.| 
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~---------------~lv~~~~~~~~~~~~~~~-  234 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD---------------TVVHERTGDPTTFLQSDL-  234 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC---------------EEEECCCCCTTCEEEEEE-
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc---------------eEEEecCCCCEEEEEEEE-
Confidence            68999999999999988776             9999987553210               001111  1234555655 


Q ss_pred             CccceeCCCccEEEEEeCCC----CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEc----CCeEEEEE
Q 022019          129 PHMSASDPTSCVFASTTRDH----PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY----NKSVRVFD  200 (304)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~----d~~i~v~d  200 (304)
                            +|+|++|+.++.++    .|++++..+++... +..+..     .+....+ ++|.+++.+.    ++.|.+||
T Consensus       235 ------SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~-----~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d  301 (695)
T 2bkl_A          235 ------SRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGVG-----AKYEVHA-WKDRFYVLTDEGAPRQRVFEVD  301 (695)
T ss_dssp             ------CTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEECSS-----CCEEEEE-ETTEEEEEECTTCTTCEEEEEB
T ss_pred             ------CCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eecCCC-----ceEEEEe-cCCcEEEEECCCCCCCEEEEEe
Confidence                  88999988887665    67777765554433 332222     4445556 5666333442    57899999


Q ss_pred             cCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC-CceEeEEeccc-cCCeEEEEECCCCc
Q 022019          201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELLYVLHGQ-EGGVTHVQFSRDGN  278 (304)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~-~~~v~~~~~~~~~~  278 (304)
                      +..+...  .+..+..  ......+..++|+  ++.++++...|+..+||.+. .++....+..+ .+.+..++++|++.
T Consensus       302 ~~~~~~~--~~~~l~~--~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~  375 (695)
T 2bkl_A          302 PAKPARA--SWKEIVP--EDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLD  375 (695)
T ss_dssp             TTBCSGG--GCEEEEC--CCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCS
T ss_pred             CCCCCcc--CCeEEec--CCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCC
Confidence            8764210  0111211  1113457778887  46688999999988887654 35555666654 56788899999998


Q ss_pred             EEEEee---ccCCeEEEEeccccee
Q 022019          279 YLYTGG---RKDPYILCWDLRKAVQ  300 (304)
Q Consensus       279 ~l~~~~---~~d~~i~vwd~~~~~~  300 (304)
                      .|+...   ...++|++||+.+++.
T Consensus       376 ~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          376 DAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEEEcCCCCCCEEEEEECCCCcE
Confidence            776333   1457899999988764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.50  E-value=5.6e-12  Score=112.01  Aligned_cols=198  Identities=10%  Similarity=0.004  Sum_probs=121.3

Q ss_pred             CCCceeEEEEcCCCCeEEEecCC-----CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSED-----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      |...+..++|||||++||.++.+     ..|++||+.+++...                 ... ....+..++       
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~-----------------~~~-~~~~~~~~~-------  215 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA-----------------DEL-KWVKFSGLA-------  215 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE-----------------EEE-EEEESCCCE-------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC-----------------ccC-CCceeccEE-------
Confidence            44478899999999999877543     469999998764311                 000 001112344       


Q ss_pred             eCCCccEEEEEeCCCC--------------EEEEEcCCCee--eEEeecccccccccceEEEEECCCCcEEE-EEcC---
Q 022019          134 SDPTSCVFASTTRDHP--------------IHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN---  193 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~--------------i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d---  193 (304)
                      |+|| +.|+.++.++.              |++|++.++..  ...+....   +...+.++.|+|||++|+ ++.+   
T Consensus       216 wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~---~~~~~~~~~~SpDG~~l~~~~~~~~~  291 (741)
T 1yr2_A          216 WLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE---LPKRGHGASVSSDGRWVVITSSEGTD  291 (741)
T ss_dssp             ESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT---CTTCEEEEEECTTSCEEEEEEECTTC
T ss_pred             EECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC---CCeEEEEEEECCCCCEEEEEEEccCC
Confidence            4889 88888877654              88999877653  22222211   112478999999999888 4443   


Q ss_pred             --CeEEEEEcCCCCcc-ceeeeeeeccccccccceeEEEeecCCCcEEEEEec----CCeEEEEecCCc--eEeEEeccc
Q 022019          194 --KSVRVFDVHRPGRD-FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY----SQTSAIYREDNM--ELLYVLHGQ  264 (304)
Q Consensus       194 --~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----dg~i~i~d~~~~--~~~~~~~~~  264 (304)
                        ..|++||+..+... .   ..+..    +....... ++|+++ .|+..+.    ++.|.+||+.++  .....+..+
T Consensus       292 ~~~~l~~~d~~~~~~~~~---~~l~~----~~~~~~~~-~~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~  362 (741)
T 1yr2_A          292 PVNTVHVARVTNGKIGPV---TALIP----DLKAQWDF-VDGVGD-QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES  362 (741)
T ss_dssp             SCCEEEEEEEETTEECCC---EEEEC----SSSSCEEE-EEEETT-EEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC
T ss_pred             CcceEEEEECCCCCCccc---EEecC----CCCceEEE-EeccCC-EEEEEECCCCCCCEEEEEeCCCCccccEEEecCC
Confidence              38999999763111 2   22221    12223333 347444 5555544    456999999874  344444455


Q ss_pred             cCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       265 ~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      ...+..+.|+ ++.++++.. .|+..+||.+.
T Consensus       363 ~~~l~~~~~~-~~~lv~~~~-~dg~~~l~~~~  392 (741)
T 1yr2_A          363 KDNLESVGIA-GNRLFASYI-HDAKSQVLAFD  392 (741)
T ss_dssp             SSEEEEEEEE-BTEEEEEEE-ETTEEEEEEEE
T ss_pred             CCeEEEEEEE-CCEEEEEEE-ECCEEEEEEEe
Confidence            5567778887 566677777 89988777664

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.48  E-value=9.6e-12  Score=100.30  Aligned_cols=180  Identities=9%  Similarity=0.112  Sum_probs=111.6

Q ss_pred             eeEEEEcCCCCeEEEecCC---------------------------CeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           63 LKGIKWSPDGSSFLTSSED---------------------------KTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        63 V~~i~~s~~~~~l~s~~~d---------------------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      +..++|+|||+.|+.++.+                           ..|.+||+.+++..                ..+.
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~----------------~~l~  169 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI----------------EEFE  169 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE----------------EEEE
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE----------------eeec
Confidence            8999999999988887632                           46777887644210                0111


Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeCCC-------CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEE
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDH-------PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI  188 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  188 (304)
                      .  . .+..+.|       +|+| +++++..++       ...||.+.+++... +... .     .+..+  +|+|+.|
T Consensus       170 ~--~-~~~~~~~-------spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-l~~~-~-----~~~~~--spdg~~l  229 (347)
T 2gop_A          170 K--P-RFSSGIW-------HRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEK-MFEK-V-----SFYAV--DSDGERI  229 (347)
T ss_dssp             E--E-TTCEEEE-------ETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEE-EEEE-E-----SEEEE--EECSSCE
T ss_pred             C--C-CcccccC-------CCCe-EEEEEecccccccccccccEEEeCCCceEE-eccC-c-----ceeeE--CCCCCEE
Confidence            1  1 3334444       7888 777776542       33454444554433 2222 1     44444  8999988


Q ss_pred             E-EEcC--------CeEEEEEcCCCCccceeeeeeeccccccccceeE-EEeecCCCcEEEEEecCCeEEEEecCCceEe
Q 022019          189 F-AGYN--------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA-IAFSPTHTGMLAIGSYSQTSAIYREDNMELL  258 (304)
Q Consensus       189 ~-~~~d--------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~  258 (304)
                      + ++.+        ..|.+||  . +. .   ..+   ...+...+.. +.|+ + + ++++++.++.++|| +.+++..
T Consensus       230 ~~~~~~~~~~~~~~~~l~~~d--~-~~-~---~~l---~~~~~~~~~~~~~~s-d-g-~~~~~~~~~~~~l~-~~~g~~~  295 (347)
T 2gop_A          230 LLYGKPEKKYMSEHNKLYIYD--G-KE-V---MGI---LDEVDRGVGQAKIKD-G-K-VYFTLFEEGSVNLY-IWDGEIK  295 (347)
T ss_dssp             EEEECCSSSCCCSSCEEEEEC--S-SC-E---EES---STTCCSEEEEEEEET-T-E-EEEEEEETTEEEEE-EESSSEE
T ss_pred             EEEEccccCCccccceEEEEC--C-Cc-e---Eec---cccCCcccCCccEEc-C-c-EEEEEecCCcEEEE-EcCCceE
Confidence            7 4433        3677777  2 11 1   111   1344556775 8898 4 4 88999999999999 8765554


Q ss_pred             EEeccccCCeEEEEECCCCcEEEEeeccCCeE-EEEecc
Q 022019          259 YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI-LCWDLR  296 (304)
Q Consensus       259 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i-~vwd~~  296 (304)
                      . +..+...|.+++|+|  .++++++ .++.. .+|.+.
T Consensus       296 ~-~~~~~~~v~~~~~s~--~~~~~~~-~~~~~~~l~~~~  330 (347)
T 2gop_A          296 P-IAKGRHWIMGFDVDE--IVVYLKE-TATRLRELFTWD  330 (347)
T ss_dssp             E-EECSSSEEEEEEESS--SEEEEEE-CSSSCCEEEEES
T ss_pred             E-EecCCCeEEeeeeeC--cEEEEEc-CCCChHHheEeC
Confidence            3 334577899999999  6777776 55544 666664

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.48  E-value=6.2e-12  Score=110.79  Aligned_cols=204  Identities=10%  Similarity=0.082  Sum_probs=129.3

Q ss_pred             cCCCCceeEEEEcCCCCeEEE-----ecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           57 SIPNNFLKGIKWSPDGSSFLT-----SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        57 ~~h~~~V~~i~~s~~~~~l~s-----~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      .+|...+..++|||||++||-     |+....|++||+.+++....                 .. .......+      
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-----------------~~-~~~k~~~~------  180 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-----------------PL-KDVKFSGI------  180 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-----------------EE-EEEESCCC------
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-----------------cc-CCceeccE------
Confidence            346668999999999998884     33346799999987643110                 00 00001233      


Q ss_pred             ceeCCCccEEEEEeCCCC-------------EEEEEcCCCee--eEEeecccccccccceEEEEECCCCcEEEE-E----
Q 022019          132 SASDPTSCVFASTTRDHP-------------IHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G----  191 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~----  191 (304)
                       +|+ |++.|+.++.+..             |++|++.++..  ...+....  .+...+.++.|+|||++|+. .    
T Consensus       181 -~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~--~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          181 -SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIP--AQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             -EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSG--GGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             -EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCC--CCCeEEEEEEEcCCCCEEEEEEccCC
Confidence             448 8888888887743             99999887653  22232211  01224678999999998873 2    


Q ss_pred             cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC---CeEEEEecCCceE--eEEeccccC
Q 022019          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMEL--LYVLHGQEG  266 (304)
Q Consensus       192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~--~~~~~~~~~  266 (304)
                      ....|+++|+..+......+   .    .+....... |+++++.+++....+   +.|..+|+.++..  ...+..|..
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l---~----~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  328 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTV---Q----GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ  328 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEE---E----CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred             CCcEEEEEECCCCCCceEEE---e----CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC
Confidence            22589999997653333222   1    122223333 566467676666554   6799999987654  345555666


Q ss_pred             CeEEEEECCCCcEEEEeeccCC--eEEEEecccc
Q 022019          267 GVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKA  298 (304)
Q Consensus       267 ~v~~~~~~~~~~~l~~~~~~d~--~i~vwd~~~~  298 (304)
                      .+.  .|++++.+|+.....++  .|.+|++..+
T Consensus       329 ~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          329 QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence            555  89999998887774555  6889998754

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.46  E-value=4.2e-13  Score=108.43  Aligned_cols=145  Identities=10%  Similarity=0.024  Sum_probs=102.2

Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeE-----EeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCcc
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRC-----TYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRD  207 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~  207 (304)
                      ++++...++++|+.++ +.+|++.+.....     .+......... .|+.++|  +++.|+++.++.|++||++.... 
T Consensus        44 ais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp-~V~~l~f--d~~~L~v~~~~~l~v~dv~sl~~-  118 (388)
T 1xip_A           44 DISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIP-DVIFVCF--HGDQVLVSTRNALYSLDLEELSE-  118 (388)
T ss_dssp             EEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECT-TEEEEEE--ETTEEEEEESSEEEEEESSSTTC-
T ss_pred             EEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCC-CeeEEEE--CCCEEEEEcCCcEEEEEchhhhc-
Confidence            4477888999999886 6679876432000     01100001122 3899999  89999988999999999986431 


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccC
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD  287 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d  287 (304)
                      ....       ..+...+.++.+.+ .  .+++++.||.|.+||+..+....    +...|++++|||+|  ++.|. .|
T Consensus       119 ~~~~-------~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~-~d  181 (388)
T 1xip_A          119 FRTV-------TSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL-KD  181 (388)
T ss_dssp             EEEE-------EECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE-TT
T ss_pred             cCcc-------ceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE-cC
Confidence            1111       23344577777766 3  28889999999999999777643    45689999999999  66677 89


Q ss_pred             CeEEEEecccce
Q 022019          288 PYILCWDLRKAV  299 (304)
Q Consensus       288 ~~i~vwd~~~~~  299 (304)
                      |.+++|+...++
T Consensus       182 g~i~~~~~~~~~  193 (388)
T 1xip_A          182 RSFQSFAWRNGE  193 (388)
T ss_dssp             SCEEEEEEETTE
T ss_pred             CcEEEEcCCCcc
Confidence            999999887765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.43  E-value=4.7e-10  Score=89.66  Aligned_cols=197  Identities=15%  Similarity=0.128  Sum_probs=123.9

Q ss_pred             CceeEEEEcCCC-CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           61 NFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        61 ~~V~~i~~s~~~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      ....+..|+|++ .++++...++.|.+||..++...                   .......+.++.|       +++|+
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-------------------~~~~~~~v~~i~~-------~~dg~  102 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-------------------VHALPFMGSALAK-------ISDSK  102 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-------------------EEECSSCEEEEEE-------EETTE
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-------------------EEECCCcceEEEE-------eCCCe
Confidence            345688999974 45666667889999998754221                   1112245666665       66887


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEc-------CCeEEEEEcCCCCccceeee
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY-------NKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-------d~~i~v~d~~~~~~~~~~~~  212 (304)
                      ++++. .++ |.+||..+++.......... .....+..+.++|+|+++++..       .+.|..++  . +. ..   
T Consensus       103 l~v~~-~~g-l~~~d~~~g~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~-g~-~~---  172 (326)
T 2ghs_A          103 QLIAS-DDG-LFLRDTATGVLTLHAELESD-LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K-GK-VT---  172 (326)
T ss_dssp             EEEEE-TTE-EEEEETTTCCEEEEECSSTT-CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T-TE-EE---
T ss_pred             EEEEE-CCC-EEEEECCCCcEEEEeeCCCC-CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C-Cc-EE---
Confidence            77654 444 99999988875433222111 1123688999999999777542       24555555  2 21 11   


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC--Cc-e-----EeEEeccccCCeEEEEECCCCcEEEEee
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--NM-E-----LLYVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~--~~-~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      .+.    ........++|+|++..++++.+.++.|.+||+.  ++ .     ....+.........++++++|.+.++..
T Consensus       173 ~~~----~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~  248 (326)
T 2ghs_A          173 KLF----ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW  248 (326)
T ss_dssp             EEE----EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred             Eee----CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe
Confidence            111    1122367899999544455666667899999985  45 2     2333333445678899999998777665


Q ss_pred             ccCCeEEEEecccce
Q 022019          285 RKDPYILCWDLRKAV  299 (304)
Q Consensus       285 ~~d~~i~vwd~~~~~  299 (304)
                       .++.|.+|+. +++
T Consensus       249 -~~~~v~~~d~-~g~  261 (326)
T 2ghs_A          249 -GEGAVDRYDT-DGN  261 (326)
T ss_dssp             -TTTEEEEECT-TCC
T ss_pred             -CCCEEEEECC-CCC
Confidence             6788999998 444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.42  E-value=2.3e-11  Score=98.00  Aligned_cols=213  Identities=11%  Similarity=0.010  Sum_probs=119.6

Q ss_pred             EEEEcCCCCeEEEec----------CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           65 GIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        65 ~i~~s~~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+.++|||++++++.          .++.|.+||+.+.+....+...                ..... ..--.|..+++
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~----------------~~~~~-~~g~~P~~ia~  131 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP----------------DAPRF-SVGPRVHIIGN  131 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET----------------TSCSC-CBSCCTTSEEE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC----------------Ccccc-ccCCCcceEEE
Confidence            799999999888875          3789999999977553332111                00000 00013666777


Q ss_pred             CCCccEEEEEeC--CCCEEE--EEcCCCeeeEEeeccccc--ccccceEEEEE---------------------------
Q 022019          135 DPTSCVFASTTR--DHPIHL--WDATTGLLRCTYRAYDAV--DEITAAFSVAF---------------------------  181 (304)
Q Consensus       135 ~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~--~~~~~v~~i~~---------------------------  181 (304)
                      +|||++++++..  +..+.+  +|+.+   ...+......  .....-.-+.+                           
T Consensus       132 SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~  208 (368)
T 1mda_H          132 CASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG  208 (368)
T ss_dssp             CTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred             cCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeee
Confidence            888888888764  346777  77755   2222211100  00000000111                           


Q ss_pred             ----------CCCCcE-EEEEcCCeEEEEEcCCCCccceeeeeeecc------ccccccceeEEEeecCCCcEEEEEe--
Q 022019          182 ----------NPTGTK-IFAGYNKSVRVFDVHRPGRDFEKYSTLKGN------KEGQAGIMSAIAFSPTHTGMLAIGS--  242 (304)
Q Consensus       182 ----------~~~~~~-l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~p~~~~~l~~~~--  242 (304)
                                .+++.. ++++. +.+.+.|+.......  ...+...      ..........++++|++++++++..  
T Consensus       209 ~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v--~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~  285 (368)
T 1mda_H          209 AQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATM--KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH  285 (368)
T ss_dssp             TSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEE--ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             eeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceE--EEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccc
Confidence                      222222 22334 666666664321110  0111000      0000111223789995554444433  


Q ss_pred             -c-----CCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeec-cCCeEEEEecccceee
Q 022019          243 -Y-----SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR-KDPYILCWDLRKAVQV  301 (304)
Q Consensus       243 -~-----dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~d~~i~vwd~~~~~~~  301 (304)
                       .     ++.+.++|+.+.+.+..+.... ....+.|+|||++++.+.+ .++.|.++|+.+++.+
T Consensus       286 ~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          286 SRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             SSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             cCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence             1     2356699999999998887543 5789999999987666663 3899999999998765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.42  E-value=1.8e-09  Score=84.97  Aligned_cols=198  Identities=10%  Similarity=0.076  Sum_probs=131.9

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEee-cCCeEEEEeecCccceeCC
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EGESVYDFCWFPHMSASDP  136 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~  136 (304)
                      .+...+.++++.++|..+++...++.|..||.. +... .                .... ....+..++       +++
T Consensus        59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~----------------~~~~~~~~~~~~i~-------~~~  113 (300)
T 2qc5_A           59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-E----------------YPLPQPDSGPYGIT-------EGL  113 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-E----------------EECSSTTCCEEEEE-------ECS
T ss_pred             CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-E----------------ecCCCCCCCCccce-------ECC
Confidence            344679999999999988877778899999876 3221 0                0000 112344444       477


Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeee
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      +++++++...++.|..+|.. ++... +....   ....+.+++++++++++++. .++.|..||.. . . ...   ..
T Consensus       114 ~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~~~---~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g-~-~~~---~~  182 (300)
T 2qc5_A          114 NGDIWFTQLNGDRIGKLTAD-GTIYE-YDLPN---KGSYPAFITLGSDNALWFTENQNNSIGRITNT-G-K-LEE---YP  182 (300)
T ss_dssp             TTCEEEEETTTTEEEEECTT-SCEEE-EECSS---TTCCEEEEEECTTSSEEEEETTTTEEEEECTT-C-C-EEE---EE
T ss_pred             CCCEEEEccCCCeEEEECCC-CCEEE-ccCCC---CCCCceeEEECCCCCEEEEecCCCeEEEECCC-C-c-EEE---ee
Confidence            88888877778889999987 55442 22211   11267899999999966666 57889999983 2 1 111   11


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeE-EeccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                        .......+..+++++ ++.++++....+.|.+||. +++... .+..+...+.+++++++|...++.. .++.|..|+
T Consensus       183 --~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~  257 (300)
T 2qc5_A          183 --LPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW-GANQIGRIT  257 (300)
T ss_dssp             --CSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEEC
T ss_pred             --CCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc-CCCeEEEEC
Confidence              122334578999999 6667776666788999998 444322 2333456789999999998666655 678999999


Q ss_pred             cc
Q 022019          295 LR  296 (304)
Q Consensus       295 ~~  296 (304)
                      ..
T Consensus       258 ~~  259 (300)
T 2qc5_A          258 ND  259 (300)
T ss_dssp             TT
T ss_pred             CC
Confidence            83

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.41  E-value=1.1e-09  Score=86.23  Aligned_cols=197  Identities=12%  Similarity=0.101  Sum_probs=132.5

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEe-ecCCeEEEEeecCccceeCC
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV-TEGESVYDFCWFPHMSASDP  136 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~  136 (304)
                      .....+.+++++++|..+++...++.|.+||.. +....                 ... .....+..+++       ++
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-----------------~~~~~~~~~~~~i~~-------~~   71 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-----------------FEVPTPDAKVMCLIV-------SS   71 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-----------------EECSSTTCCEEEEEE-------CT
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-----------------EECCCCCCcceeEEE-------CC
Confidence            345678999999999988877778999999976 33211                 000 01133444444       77


Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeee
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      +++++++...++.|..+|.. ++.. .+....   ....+.+++++++++++++. .++.|..||.. +.  ..   ...
T Consensus        72 ~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~---~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~--~~---~~~  140 (300)
T 2qc5_A           72 LGDIWFTENGANKIGKLSKK-GGFT-EYPLPQ---PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT--IY---EYD  140 (300)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEE-EEECSS---TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC--EE---EEE
T ss_pred             CCCEEEEecCCCeEEEECCC-CCeE-EecCCC---CCCCCccceECCCCCEEEEccCCCeEEEECCC-CC--EE---Ecc
Confidence            88888777767889999987 5543 232221   11267899999999888776 57899999875 21  11   111


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeE-EeccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                        .......+..++++| ++.++++...++.|..||. +++... ....+...+..++++++|...++.. ..+.|.+|+
T Consensus       141 --~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~  215 (300)
T 2qc5_A          141 --LPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI-MGNKIGRIT  215 (300)
T ss_dssp             --CSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEEC
T ss_pred             --CCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc-CCCEEEEEc
Confidence              122234578999999 5666666666789999998 444332 2223445689999999998766665 677899999


Q ss_pred             c
Q 022019          295 L  295 (304)
Q Consensus       295 ~  295 (304)
                      .
T Consensus       216 ~  216 (300)
T 2qc5_A          216 T  216 (300)
T ss_dssp             T
T ss_pred             C
Confidence            8

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.39  E-value=8.6e-11  Score=92.08  Aligned_cols=154  Identities=8%  Similarity=0.152  Sum_probs=107.9

Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccc-ccccccceEEEEE-CCCCcEEEEE-c-CCeEEEEEcCCCCcc
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD-AVDEITAAFSVAF-NPTGTKIFAG-Y-NKSVRVFDVHRPGRD  207 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~v~~i~~-~~~~~~l~~~-~-d~~i~v~d~~~~~~~  207 (304)
                      ++++++++++++...++.|.+||.. ++....+.... ...+...+.++++ .++++++++. . ++.|.+||...  ..
T Consensus        35 v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g--~~  111 (286)
T 1q7f_A           35 VAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG--QF  111 (286)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS--CE
T ss_pred             EEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCC--cE
Confidence            3448889988888889999999987 55555443211 1112236789999 5777777766 3 89999999432  11


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec--cccCCeEEEEECCCCcEEEEeec
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGGR  285 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~  285 (304)
                      .   ..+.   ..+...+.+++++| ++.++++...++.|.+||.. ++.+..+.  .+...+..++++|+|+++++.. 
T Consensus       112 ~---~~~~---~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-  182 (286)
T 1q7f_A          112 V---RKFG---ATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN-  182 (286)
T ss_dssp             E---EEEC---TTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG-
T ss_pred             E---EEec---CccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC-
Confidence            1   1111   12334578999999 66788877788999999964 55555553  3445689999999999777766 


Q ss_pred             cCCeEEEEeccc
Q 022019          286 KDPYILCWDLRK  297 (304)
Q Consensus       286 ~d~~i~vwd~~~  297 (304)
                      .++.|++||...
T Consensus       183 ~~~~i~~~~~~g  194 (286)
T 1q7f_A          183 RAHCVKVFNYEG  194 (286)
T ss_dssp             GGTEEEEEETTC
T ss_pred             CCCEEEEEcCCC
Confidence            799999999854

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.39  E-value=1.4e-09  Score=86.86  Aligned_cols=192  Identities=14%  Similarity=0.122  Sum_probs=118.1

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      ...+.++.|+|+|+++++. .+ .|.+||..++........      ...       .....+.++.+       +|+|+
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~------~~~-------~~~~~~~~i~~-------d~~G~  146 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL------ESD-------LPGNRSNDGRM-------HPSGA  146 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS------STT-------CTTEEEEEEEE-------CTTSC
T ss_pred             CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeC------CCC-------CCCCCCCCEEE-------CCCCC
Confidence            4579999999999877754 34 499999876543110000      000       00123455554       77888


Q ss_pred             EEEEEeC------CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcC-CCCcccee
Q 022019          140 VFASTTR------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVH-RPGRDFEK  210 (304)
Q Consensus       140 ~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~-~~~~~~~~  210 (304)
                      ++++...      .+.|+.++  +++........      .....++|+|+++.++ +. .++.|.+||+. ..+.....
T Consensus       147 l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~------~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~  218 (326)
T 2ghs_A          147 LWIGTMGRKAETGAGSIYHVA--KGKVTKLFADI------SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK  218 (326)
T ss_dssp             EEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEE------SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred             EEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCC------cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC
Confidence            7765542      24556666  45543322111      1457899999998776 44 57899999986 11201110


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEEC-CCCcEEEEee
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS-RDGNYLYTGG  284 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  284 (304)
                      ...+.. .......+..+++++ ++.++++...++.|.+||. +++.+..+..+...+++++|+ |++..|+.++
T Consensus       219 ~~~~~~-~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          219 AEVFID-STGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             CEEEEE-CTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             ceEEEE-CCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            011111 112233467899999 5666666666789999998 577777777666679999998 8988776655

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.38  E-value=1.7e-10  Score=102.51  Aligned_cols=202  Identities=11%  Similarity=0.096  Sum_probs=126.3

Q ss_pred             eeEEEEcCCCCeEEEecCCCe--------------EEEeeCCCCCCccccccccccccCCccceEEEeecC--CeEEEEe
Q 022019           63 LKGIKWSPDGSSFLTSSEDKT--------------LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG--ESVYDFC  126 (304)
Q Consensus        63 V~~i~~s~~~~~l~s~~~dg~--------------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~  126 (304)
                      +..++|+|| +.|+.++.|+.              |.+|++.++....               ..+.....  ..+..+.
T Consensus       211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~---------------~lv~~~~~~~~~~~~~~  274 (741)
T 1yr2_A          211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD---------------QPVFATPELPKRGHGAS  274 (741)
T ss_dssp             SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC---------------EEEECCTTCTTCEEEEE
T ss_pred             eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC---------------EEEeccCCCCeEEEEEE
Confidence            357899999 98888876654              7888876442100               00111111  1345555


Q ss_pred             ecCccceeCCCccEEEEEeCCC-----CEEEEEcCCC--eeeEEeecccccccccceEEEEECCCCcEEE-EEc----CC
Q 022019          127 WFPHMSASDPTSCVFASTTRDH-----PIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY----NK  194 (304)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~----d~  194 (304)
                      |       +|||++|+..+.++     .|++||+.++  +....+.....     .+... ++|+|+.|+ .+.    ++
T Consensus       275 ~-------SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-----~~~~~-~~~dg~~l~~~s~~~~~~~  341 (741)
T 1yr2_A          275 V-------SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK-----AQWDF-VDGVGDQLWFVSGDGAPLK  341 (741)
T ss_dssp             E-------CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS-----SCEEE-EEEETTEEEEEECTTCTTC
T ss_pred             E-------CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC-----ceEEE-EeccCCEEEEEECCCCCCC
Confidence            5       88999888877544     7999999877  31233333221     33333 348888877 443    35


Q ss_pred             eEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC-CceEeEEecc-ccCCeEEEE
Q 022019          195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELLYVLHG-QEGGVTHVQ  272 (304)
Q Consensus       195 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~-~~~~v~~~~  272 (304)
                      .|.+||+..+.   .....+.   ..+...+..+.|+  ++.++++...|+..+||.+. .++....+.. +.+.+..+.
T Consensus       342 ~l~~~d~~~~~---~~~~~l~---~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~  413 (741)
T 1yr2_A          342 KIVRVDLSGST---PRFDTVV---PESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLS  413 (741)
T ss_dssp             EEEEEECSSSS---CEEEEEE---CCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEE
T ss_pred             EEEEEeCCCCc---cccEEEe---cCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEee
Confidence            69999987532   1112222   2233446677776  45688889999987777554 4555566654 356789999


Q ss_pred             ECCCCcEEEEee---ccCCeEEEEecccceee
Q 022019          273 FSRDGNYLYTGG---RKDPYILCWDLRKAVQV  301 (304)
Q Consensus       273 ~~~~~~~l~~~~---~~d~~i~vwd~~~~~~~  301 (304)
                      ++|++..|+...   ...++|++||+.+++..
T Consensus       414 ~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~  445 (741)
T 1yr2_A          414 GRPGDRHAYLSFSSFTQPATVLALDPATAKTT  445 (741)
T ss_dssp             CCBTCSCEEEEEEETTEEEEEEEEETTTTEEE
T ss_pred             cCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence            999998666332   14578999999887643

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.38  E-value=3.5e-10  Score=89.56  Aligned_cols=200  Identities=10%  Similarity=0.085  Sum_probs=123.7

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+..+...+.+++++++|+++++...++.|.+|+.. +....                 +.......   -.-.|..+++
T Consensus        80 ~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~-----------------~~~~~~~~---~~~~~~~i~~  138 (305)
T 3dr2_A           80 VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHL-----------------LVGRYAGK---RLNSPNDLIV  138 (305)
T ss_dssp             EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-----------------EECEETTE---ECSCCCCEEE
T ss_pred             EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEE-----------------EEeccCCC---ccCCCCCEEE
Confidence            344456778999999999977766666889999875 32110                 00000000   0012334455


Q ss_pred             CCCccEEEE----EeC-------------CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC---
Q 022019          135 DPTSCVFAS----TTR-------------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN---  193 (304)
Q Consensus       135 ~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d---  193 (304)
                      +++|+++++    |..             .+.|+.+|..+++..... ...      ....++|+|+++.|+++ ..   
T Consensus       139 d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~------~p~gl~~spdg~~lyv~~~~~~~  211 (305)
T 3dr2_A          139 ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLD------HPNGLAFSPDEQTLYVSQTPEQG  211 (305)
T ss_dssp             CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EES------SEEEEEECTTSSEEEEEECCC--
T ss_pred             CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCC------CCcceEEcCCCCEEEEEecCCcC
Confidence            889998886    332             245777777666654432 111      56789999999987754 43   


Q ss_pred             ---CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEE
Q 022019          194 ---KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH  270 (304)
Q Consensus       194 ---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~  270 (304)
                         +.|.+||+....  ......+..   .....+..+++++ ++.+ .+++.+ .|.+|+. .++.+..+..+. .+.+
T Consensus       212 ~~~~~i~~~~~~~~~--l~~~~~~~~---~~~~~pdgi~~d~-~G~l-wv~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~  281 (305)
T 3dr2_A          212 HGSVEITAFAWRDGA--LHDRRHFAS---VPDGLPDGFCVDR-GGWL-WSSSGT-GVCVFDS-DGQLLGHIPTPG-TASN  281 (305)
T ss_dssp             -CCCEEEEEEEETTE--EEEEEEEEC---CSSSCCCSEEECT-TSCE-EECCSS-EEEEECT-TSCEEEEEECSS-CCCE
T ss_pred             CCCCEEEEEEecCCC--ccCCeEEEE---CCCCCCCeEEECC-CCCE-EEecCC-cEEEECC-CCCEEEEEECCC-ceeE
Confidence               789999987532  111111111   1123356789999 5654 444444 5999998 566777776554 5899


Q ss_pred             EEECCCCcEEEEeeccCCeEEEEe
Q 022019          271 VQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       271 ~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      ++|+|+++.|+.++ .++ |..++
T Consensus       282 ~~f~~d~~~L~it~-~~~-l~~~~  303 (305)
T 3dr2_A          282 CTFDQAQQRLFITG-GPC-LWMLP  303 (305)
T ss_dssp             EEECTTSCEEEEEE-TTE-EEEEE
T ss_pred             EEEeCCCCEEEEEc-CCe-EEEEE
Confidence            99999999998887 553 44333

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.32  E-value=1.2e-09  Score=86.44  Aligned_cols=200  Identities=13%  Similarity=0.137  Sum_probs=122.4

Q ss_pred             eecCCCCceeEEEEcCCCC-eEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           55 TSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      .+..+.....+..|+|+|+ ++++...++.|..|+.. +..                  .........+..+.+      
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~------------------~~~~~~~~~~~gl~~------   93 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV------------------DVLLDATAFTNGNAV------   93 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE------------------EEEEESCSCEEEEEE------
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE------------------EEEeCCCCccceeeE------
Confidence            4445566778999999998 56777788999999873 221                  011122234455544      


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE----Ec--------------CCe
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA----GY--------------NKS  195 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~----~~--------------d~~  195 (304)
                       +++|+++++...++.|.+|+.. ++.......... .....+..++++|+|+++++    |.              .+.
T Consensus        94 -d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~-~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~  170 (305)
T 3dr2_A           94 -DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAG-KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHS  170 (305)
T ss_dssp             -CTTSCEEEEETTTTEEEEECTT-SCEEEEECEETT-EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEE
T ss_pred             -CCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCC-CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCe
Confidence             7899877766666789999976 554322221111 11225678999999998875    31              245


Q ss_pred             EEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC------CeEEEEecCCceE--eEEe-ccccC
Q 022019          196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMEL--LYVL-HGQEG  266 (304)
Q Consensus       196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~--~~~~-~~~~~  266 (304)
                      |+.||...+.  ...+.        .......++|+| ++..|+++...      +.|++|++.....  ...+ .....
T Consensus       171 v~~~d~~~g~--~~~~~--------~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~  239 (305)
T 3dr2_A          171 VYRLPPDGSP--LQRMA--------DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG  239 (305)
T ss_dssp             EEEECSSSCC--CEEEE--------EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred             EEEEcCCCCc--EEEEe--------cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence            7777764421  11111        122357899999 55555555444      7899999875431  1111 11233


Q ss_pred             CeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       267 ~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      ....++++++|+ |.++. .+| |.+|+..
T Consensus       240 ~pdgi~~d~~G~-lwv~~-~~g-v~~~~~~  266 (305)
T 3dr2_A          240 LPDGFCVDRGGW-LWSSS-GTG-VCVFDSD  266 (305)
T ss_dssp             CCCSEEECTTSC-EEECC-SSE-EEEECTT
T ss_pred             CCCeEEECCCCC-EEEec-CCc-EEEECCC
Confidence            456789999998 55555 454 9999984

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.32  E-value=5.7e-09  Score=79.71  Aligned_cols=200  Identities=9%  Similarity=0.072  Sum_probs=129.8

Q ss_pred             ceeEEEEcCCCCeEEEecC--CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           62 FLKGIKWSPDGSSFLTSSE--DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      ....+.|++++.++++.+.  ++.|+++|+.+++.......                ........+.+       . .+.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l----------------~~~~fgeGi~~-------~-g~~   77 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM----------------DDSYFGEGLTL-------L-NEK   77 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC----------------CTTCCEEEEEE-------E-TTE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec----------------CCCcceEEEEE-------e-CCE
Confidence            4689999998765555543  67999999998765433221                11111112222       1 224


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccc
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                      ++++.-.++.+.++|..+.+.+.++... . .   .  ...++++|+.++++ .++.|.++|..+.. ..   ..+.-..
T Consensus        78 lyv~t~~~~~v~viD~~t~~v~~~i~~g-~-~---~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~-v~---~~I~Vg~  146 (266)
T 2iwa_A           78 LYQVVWLKNIGFIYDRRTLSNIKNFTHQ-M-K---D--GWGLATDGKILYGSDGTSILYEIDPHTFK-LI---KKHNVKY  146 (266)
T ss_dssp             EEEEETTCSEEEEEETTTTEEEEEEECC-S-S---S--CCEEEECSSSEEEECSSSEEEEECTTTCC-EE---EEEECEE
T ss_pred             EEEEEecCCEEEEEECCCCcEEEEEECC-C-C---C--eEEEEECCCEEEEECCCCeEEEEECCCCc-EE---EEEEECC
Confidence            4555557889999999999988887654 1 1   1  23345577777765 78899999987632 11   2221110


Q ss_pred             cc-cccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc-------------CCeEEEEECCCCcEEEEee
Q 022019          219 EG-QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-------------GGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       219 ~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~  284 (304)
                      .+ ....+..+.|.  ++.+++....++.|.+.|..+++.+..+....             .....++|+|+++.|+.++
T Consensus       147 ~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          147 NGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             TTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             CCcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence            11 11235677887  34566666568899999999999888886321             2568999999998777666


Q ss_pred             ccCCeEEEEecccc
Q 022019          285 RKDPYILCWDLRKA  298 (304)
Q Consensus       285 ~~d~~i~vwd~~~~  298 (304)
                      ...+.|.+.++...
T Consensus       225 k~~~~v~~i~l~~~  238 (266)
T 2iwa_A          225 KLWPKLFEIKLHLV  238 (266)
T ss_dssp             TTCSEEEEEEEEEC
T ss_pred             CCCCeEEEEEEecc
Confidence            57889999988764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.30  E-value=7.7e-09  Score=85.16  Aligned_cols=200  Identities=8%  Similarity=0.006  Sum_probs=122.4

Q ss_pred             EEEcCCCCeEEEecCCC--eEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEE
Q 022019           66 IKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS  143 (304)
Q Consensus        66 i~~s~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~  143 (304)
                      ++|+|+++.|+++..++  .|.+++..........               -.....     ..-.|..++++|++..|++
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~---------------g~~~~~-----~~~~p~~iav~p~~g~lyv  235 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI---------------GQLGST-----FSGKIGAVALDETEEWLYF  235 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE---------------EECCTT-----SCSCCCBCEECTTSSEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe---------------eeccch-----hcCCcEEEEEeCCCCeEEE
Confidence            89999999888888766  7888876533210000               000000     0123455566884444444


Q ss_pred             EeCCCCEEEEEcCCCeeeEEeeccccccccc-ceE-EEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeeeeeccc-
Q 022019          144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEIT-AAF-SVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNK-  218 (304)
Q Consensus       144 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~-~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~-  218 (304)
                      +..++.|+.||..++.... +.......... ... .++|+|++..|+ +. .++.|+.|+....   .   ..+.... 
T Consensus       236 ~d~~~~I~~~d~~~~~~~~-~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~---~~~~g~~~  308 (409)
T 3hrp_A          236 VDSNKNFGRFNVKTQEVTL-IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---C---EWFCGSAT  308 (409)
T ss_dssp             ECTTCEEEEEETTTCCEEE-EEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---E---EEEEECTT
T ss_pred             EECCCcEEEEECCCCCEEE-EecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---E---EEEEeCCC
Confidence            7778899999998765322 21100001111 113 899999654444 54 7889999987642   1   1111100 


Q ss_pred             ----------cccccceeEEEeecCCCcEEEEEe-cCCeEEEEecCCceEeEEeccc---------------cCCeEEEE
Q 022019          219 ----------EGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNMELLYVLHGQ---------------EGGVTHVQ  272 (304)
Q Consensus       219 ----------~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~---------------~~~v~~~~  272 (304)
                                .........++++| ++.++++-+ .++.|+.||+.++.. .++.++               -.....++
T Consensus       309 ~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~gia  386 (409)
T 3hrp_A          309 QKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDIC  386 (409)
T ss_dssp             CCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEE
T ss_pred             CCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEE
Confidence                      01123478999999 566777777 889999999777764 334333               23578999


Q ss_pred             ECCCCcEEEEeeccCCeEEEEec
Q 022019          273 FSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       273 ~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      ++|+|.++++-. .+++|+.+++
T Consensus       387 vd~~g~lyVad~-~n~~Ir~i~~  408 (409)
T 3hrp_A          387 YDGEGGYWIAEA-WGKAIRKYAV  408 (409)
T ss_dssp             ECSSSEEEEEES-TTCEEEEEEE
T ss_pred             EcCCCCEEEEEC-CCCeEEEEEe
Confidence            999987777666 8889988876

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.27  E-value=9.8e-10  Score=88.46  Aligned_cols=218  Identities=12%  Similarity=0.079  Sum_probs=125.6

Q ss_pred             CceeEEEEcCCCCeEEEec--CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           61 NFLKGIKWSPDGSSFLTSS--EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      ..+..++++|+|+.+++..  .++.++||.+.++... ......     .     ....+-..+..++       +++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~-----~-----~~~~~~~~p~gv~-------~d~~g   78 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQS-----G-----NAIITFDTVLGIK-------SDGNG   78 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCC-----S-----SCCCCCSCEEEEE-------ECSSS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcc-----c-----CcccceeEeeEEE-------EcCCC
Confidence            6789999999999988864  2343566665432211 000000     0     0001123444554       47888


Q ss_pred             cEEEEEeC-----CCCEEEEEcCCCeeeEEeecccc-cccccceEEEEECCCCcEEEEE-----cCCeEEEEEcCCCCcc
Q 022019          139 CVFASTTR-----DHPIHLWDATTGLLRCTYRAYDA-VDEITAAFSVAFNPTGTKIFAG-----YNKSVRVFDVHRPGRD  207 (304)
Q Consensus       139 ~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~-----~d~~i~v~d~~~~~~~  207 (304)
                      +++++-..     ++.|.+||+.+++....+..... ......+..++++|++..++.+     .++.|.+||+.... .
T Consensus        79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-~  157 (343)
T 2qe8_A           79 IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-A  157 (343)
T ss_dssp             EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-E
T ss_pred             cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-E
Confidence            87666543     57899999999987776654321 1122356799999876555533     46899999987532 1


Q ss_pred             ceeeee--------eeccccc--------------cccceeEEEeecCCCcEEEEEecCC-eEEEEecC---Cc-----e
Q 022019          208 FEKYST--------LKGNKEG--------------QAGIMSAIAFSPTHTGMLAIGSYSQ-TSAIYRED---NM-----E  256 (304)
Q Consensus       208 ~~~~~~--------~~~~~~~--------------~~~~v~~~~~~p~~~~~l~~~~~dg-~i~i~d~~---~~-----~  256 (304)
                      ......        ......+              ....+..++|+| ++..|+++..++ .+..++..   .+     +
T Consensus       158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~  236 (343)
T 2qe8_A          158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE  236 (343)
T ss_dssp             EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred             EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence            111000        0000000              012357899999 555666665554 56555532   11     0


Q ss_pred             EeE--EeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          257 LLY--VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       257 ~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      ...  ...++.+....++++++|.++++.. .++.|.+||..+++
T Consensus       237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~-~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          237 LGSKIERYSEKPICDGISIDKDHNIYVGDL-AHSAIGVITSADRA  280 (343)
T ss_dssp             HHTTCEEEEECCSCSCEEECTTCCEEEEEG-GGTEEEEEETTTTE
T ss_pred             hhcceEecccCCCCceEEECCCCCEEEEcc-CCCeEEEEECCCCC
Confidence            000  1113344566799999998888877 89999999985554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.27  E-value=1.1e-08  Score=83.24  Aligned_cols=202  Identities=13%  Similarity=0.134  Sum_probs=124.9

Q ss_pred             CCCCeEEE-ecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeE---EEEeecCccceeCCCccEEEEEe
Q 022019           70 PDGSSFLT-SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV---YDFCWFPHMSASDPTSCVFASTT  145 (304)
Q Consensus        70 ~~~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~~~~~~l~~~~  145 (304)
                      +++++|+. +..+++|.++|+.+......+.              -... ...+   .... .|+.+.+.|+| +++++.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~--------------k~ie-~~~~~~~~g~s-~Ph~~~~~pdG-i~Vs~~  155 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKII--------------KVIE-PEEVKKVSGYS-RLHTVHCGPDA-IYISAL  155 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEE--------------EEEC-HHHHHHHHCEE-EEEEEEECSSC-EEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceee--------------eeec-hhhcccccCCC-cccceeECCCe-EEEEcC
Confidence            77776655 5568899999987442110000              0000 0000   0011 35555668899 777776


Q ss_pred             CC------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEc--------------------CCeEEEE
Q 022019          146 RD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY--------------------NKSVRVF  199 (304)
Q Consensus       146 ~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--------------------d~~i~v~  199 (304)
                      .+      |.|.++|..+.+.+..+.....  ....-+.+-|+|+++.++++.                    +..|.+|
T Consensus       156 g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~--~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~  233 (462)
T 2ece_A          156 GNEEGEGPGGILMLDHYSFEPLGKWEIDRG--DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW  233 (462)
T ss_dssp             EETTSCSCCEEEEECTTTCCEEEECCSBCT--TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred             CCcCCCCCCeEEEEECCCCeEEEEEccCCC--CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence            55      7899999999999888874432  111345688999999888774                    7899999


Q ss_pred             EcCCCCccceeeeeeeccccccccceeEEEe--ecCCCcEEEEEe------cCCeEEEEecCCce--EeEEe--ccc---
Q 022019          200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF--SPTHTGMLAIGS------YSQTSAIYREDNME--LLYVL--HGQ---  264 (304)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~------~dg~i~i~d~~~~~--~~~~~--~~~---  264 (304)
                      |+.+.    +....+...  ........+.|  +| ++.++++++      .++.|.+|....++  ....+  ...   
T Consensus       234 D~~~~----k~~~tI~vg--~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~  306 (462)
T 2ece_A          234 DLRKR----KRIHSLTLG--EENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE  306 (462)
T ss_dssp             ETTTT----EEEEEEESC--TTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred             ECCCC----cEeeEEecC--CCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence            99863    222222211  01122445545  99 455555554      56788776654432  11211  110   


Q ss_pred             -------------cCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          265 -------------EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       265 -------------~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                                   ......+.+||||++|+++....+.|.+||+..
T Consensus       307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence                         234688999999999999998889999999863

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.24  E-value=6.4e-10  Score=93.52  Aligned_cols=207  Identities=11%  Similarity=0.033  Sum_probs=129.0

Q ss_pred             CceeEEEE-c-CCCCeEEEec------------------CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCC
Q 022019           61 NFLKGIKW-S-PDGSSFLTSS------------------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE  120 (304)
Q Consensus        61 ~~V~~i~~-s-~~~~~l~s~~------------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (304)
                      .....+++ + |++.+++.++                  .++.+.+.|.++.+....+.                     
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~---------------------  192 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL---------------------  192 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE---------------------
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEE---------------------
Confidence            45788998 5 8999988874                  24567777776543221111                     


Q ss_pred             eEEEEeecCccceeCCCccEEEEEeCCC--------------------------------------CEEEEEcCC--Cee
Q 022019          121 SVYDFCWFPHMSASDPTSCVFASTTRDH--------------------------------------PIHLWDATT--GLL  160 (304)
Q Consensus       121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg--------------------------------------~i~i~d~~~--~~~  160 (304)
                          +.-.|..++++|+|+++++++.+.                                      .|.+.|.++  ++.
T Consensus       193 ----Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~  268 (595)
T 1fwx_A          193 ----VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSL  268 (595)
T ss_dssp             ----ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCS
T ss_pred             ----eCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCce
Confidence                111344455566777666666432                                      477777776  433


Q ss_pred             -eEEeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCcc----ceeeeeeeccccccccceeEEEeecC
Q 022019          161 -RCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRD----FEKYSTLKGNKEGQAGIMSAIAFSPT  233 (304)
Q Consensus       161 -~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~p~  233 (304)
                       ...++...      ...++.++|||+++++ + .+.+|.++|+.+....    +..-........ -......++|+| 
T Consensus       269 ~~~~Ipvg~------~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-  340 (595)
T 1fwx_A          269 FTRYIPIAN------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-  340 (595)
T ss_dssp             SEEEEEEES------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-
T ss_pred             eEEEEecCC------CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-
Confidence             34444332      4568999999999995 4 8899999999752100    000001111111 123377899999 


Q ss_pred             CCcEEEEEecCCeEEEEecCC----------ceEeEEeccccCCe-----EEEEECCCCcEEEEeeccC-CeE-------
Q 022019          234 HTGMLAIGSYSQTSAIYREDN----------MELLYVLHGQEGGV-----THVQFSRDGNYLYTGGRKD-PYI-------  290 (304)
Q Consensus       234 ~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~~d-~~i-------  290 (304)
                      ++..+++...|+.|.+||+..          ...+.++..|-.+-     ..+.++|||++|+++.... .++       
T Consensus       341 dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~  420 (595)
T 1fwx_A          341 RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLK  420 (595)
T ss_dssp             TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSC
T ss_pred             CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCC
Confidence            456667777899999999976          55777777664432     1234689999999987322 233       


Q ss_pred             ----EEEeccccee
Q 022019          291 ----LCWDLRKAVQ  300 (304)
Q Consensus       291 ----~vwd~~~~~~  300 (304)
                          .++|+..++.
T Consensus       421 ~~~~ql~dis~~~m  434 (595)
T 1fwx_A          421 PENDQLIDISGDKM  434 (595)
T ss_dssp             CEEEEEEECSSSSC
T ss_pred             CCcceEEEcCCCcE
Confidence                8899966543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.23  E-value=2.5e-12  Score=104.64  Aligned_cols=184  Identities=14%  Similarity=0.103  Sum_probs=100.5

Q ss_pred             CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCE
Q 022019           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI  150 (304)
Q Consensus        71 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i  150 (304)
                      ++..+++++.||.|..||..+++.......                   ..+.+       ..+..++..+++++.||.|
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------~~~~s-------~p~~~~g~~~v~~s~dg~l   61 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------DPVLQ-------VPTHVEEPAFLPDPNDGSL   61 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-------------------CCSCC-------CC-----CCEEECTTTCCE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-------------------CCcee-------cceEcCCCEEEEeCCCCEE
Confidence            577899999999999999988765433221                   11111       1113466678888899999


Q ss_pred             EEEEcCCCeeeEEeecccccccccceE-EEEECCCCcEEE-EEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEE
Q 022019          151 HLWDATTGLLRCTYRAYDAVDEITAAF-SVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI  228 (304)
Q Consensus       151 ~i~d~~~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~  228 (304)
                      +.||..+|+....+......    .+. +..+. .+..++ ++.++.++.||.+++.....    .    ..+.    ..
T Consensus        62 ~a~d~~tG~~~w~~~~~~~~----~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~----~----~~~~----~~  124 (369)
T 2hz6_A           62 YTLGSKNNEGLTKLPFTIPE----LVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT----L----SSAF----AD  124 (369)
T ss_dssp             EEC-----CCSEECSCCHHH----HHTTCSCC------CCCCEEEEEEEEECCC--------------------------
T ss_pred             EEEECCCCceeeeeeccCcc----ccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE----e----cCCC----cc
Confidence            99999988876655433210    110 11111 234455 45889999999987532211    1    1111    23


Q ss_pred             EeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCC---cEEEEeeccCCeEEEEecccceee
Q 022019          229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG---NYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       229 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      .++| .+..+++++.|+.|+.||.++++.+..+..+.  .....++++.   ..+++++ .||.|+.||.++|+.+
T Consensus       125 ~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~-~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          125 SLSP-STSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSN-GDGLVVTVDSESGDVL  196 (369)
T ss_dssp             ---------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEE-TSCEEEEECTTTCCEE
T ss_pred             cccc-cCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEEC-CCCEEEEEECCCCcEE
Confidence            4567 56688889999999999999998766654221  2233344432   4577777 8999999999998764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.21  E-value=2.8e-09  Score=85.75  Aligned_cols=208  Identities=13%  Similarity=0.151  Sum_probs=121.9

Q ss_pred             cCCCCceeEEEEcCCCCeEEEecC-----CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           57 SIPNNFLKGIKWSPDGSSFLTSSE-----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        57 ~~h~~~V~~i~~s~~~~~l~s~~~-----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      .+|...+.+++++++|+++++-..     ++.|.+||+.+++...........           ..+...+..+      
T Consensus        63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~-----------~~~~~~~~~v------  125 (343)
T 2qe8_A           63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI-----------TLSNSFVNDL------  125 (343)
T ss_dssp             CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT-----------SCTTCCCCEE------
T ss_pred             ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh-----------cccccccceE------
Confidence            356678999999999886665433     578999999866532211110000           0011122333      


Q ss_pred             ceeCCC-ccEEEEEe---CCCCEEEEEcCCCeeeEEeecccccc------------------------cccceEEEEECC
Q 022019          132 SASDPT-SCVFASTT---RDHPIHLWDATTGLLRCTYRAYDAVD------------------------EITAAFSVAFNP  183 (304)
Q Consensus       132 ~~~~~~-~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~------------------------~~~~v~~i~~~~  183 (304)
                       +++++ +..+++..   .++.|.+||+.+++....+..+....                        -...+..|+|+|
T Consensus       126 -~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~  204 (343)
T 2qe8_A          126 -AVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA  204 (343)
T ss_dssp             -EEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT
T ss_pred             -EEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc
Confidence             34554 44455555   57889999998887655443211000                        002468899999


Q ss_pred             CCcEEEEE-c-CCeEEEEEcCCCCc-cceeeeeeec--cccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEe
Q 022019          184 TGTKIFAG-Y-NKSVRVFDVHRPGR-DFEKYSTLKG--NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL  258 (304)
Q Consensus       184 ~~~~l~~~-~-d~~i~v~d~~~~~~-~~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~  258 (304)
                      +++.|+.+ . ...+..++...... .... .....  ...++......+++++ ++.++++...++.|.+||..+++..
T Consensus       205 dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~  282 (343)
T 2qe8_A          205 ENEWLYLSPMHSTSMYRIKSADLSNLQLTD-AELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYK  282 (343)
T ss_dssp             TSCEEEEEESSCSEEEEEEHHHHTCTTCCH-HHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CCCEEEEEeCCCCeEEEEEHHHhcCCCCCh-hhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEE
Confidence            99988854 3 34566665421000 0000 00000  0012223466799999 6788888888999999998556543


Q ss_pred             EEecc-ccCCeEEEEECCCCcEEEEee
Q 022019          259 YVLHG-QEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       259 ~~~~~-~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      ..... +.....+++|.++|.++++.+
T Consensus       283 ~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          283 LLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             EEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             EEEECCceecCCeeEECCCCcEEEEeC
Confidence            33322 245689999999998777766

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.21  E-value=1.2e-09  Score=88.03  Aligned_cols=193  Identities=13%  Similarity=0.090  Sum_probs=122.3

Q ss_pred             EEcCCCCeEEEecC-----CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           67 KWSPDGSSFLTSSE-----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        67 ~~s~~~~~l~s~~~-----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      ...|+++.++....     ++.|.+.|..+.+....+                .         .-..|. ++++|+|+++
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I----------------~---------vG~~P~-va~spDG~~l   92 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI----------------D---------GGFLPN-PVVADDGSFI   92 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE----------------E---------ECSSCE-EEECTTSSCE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEE----------------E---------CCCCCc-EEECCCCCEE
Confidence            34578887777654     679999999866442211                1         112233 4669999988


Q ss_pred             EEEe----------CCCCEEEEEcCCCeeeEEeeccccc--ccccceEEEEECCCCcEEEEE-c--CCeEEEEEcCCCCc
Q 022019          142 ASTT----------RDHPIHLWDATTGLLRCTYRAYDAV--DEITAAFSVAFNPTGTKIFAG-Y--NKSVRVFDVHRPGR  206 (304)
Q Consensus       142 ~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~-~--d~~i~v~d~~~~~~  206 (304)
                      ++++          .++.|.+||..+.+....+......  ........+.|+|||++++++ .  ++.|.++|+.+.  
T Consensus        93 yVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~--  170 (386)
T 3sjl_D           93 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK--  170 (386)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT--
T ss_pred             EEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC--
Confidence            7775          3678999999999988887654210  001134579999999999955 3  689999999874  


Q ss_pred             cceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC-ceEeEEeccc----cCCeE-EEEE-CCCCcE
Q 022019          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQ----EGGVT-HVQF-SRDGNY  279 (304)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~v~-~~~~-~~~~~~  279 (304)
                        +....+..  .+    . ...+ |.+.+.+++.+.||.+.+.++.. ++.......+    ..++. ...| .++|++
T Consensus       171 --~vv~tI~v--~g----~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~  240 (386)
T 3sjl_D          171 --AFKRMLDV--PD----C-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL  240 (386)
T ss_dssp             --EEEEEEEC--CS----E-EEEE-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             --cEEEEEEC--CC----c-ceee-cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcE
Confidence              11122211  11    1 1223 43666777888899999999876 5543222111    12222 2456 468876


Q ss_pred             EEEeeccCCeEEEEecccce
Q 022019          280 LYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       280 l~~~~~~d~~i~vwd~~~~~  299 (304)
                      ++ .+ .+|.|++.|+.++.
T Consensus       241 ~~-vs-~~g~V~v~d~~~~~  258 (386)
T 3sjl_D          241 VW-PT-YTGKIHQIDLSSGD  258 (386)
T ss_dssp             EE-EB-TTSEEEEEECTTSS
T ss_pred             EE-Ee-CCCEEEEEECCCCc
Confidence            66 45 68999999997654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.18  E-value=2.4e-08  Score=75.43  Aligned_cols=184  Identities=7%  Similarity=0.088  Sum_probs=118.1

Q ss_pred             ceeEEEEcCCCCeEEEecCCC--eEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           62 FLKGIKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      ....+.|+ ++.++.+.+.+|  .|+++|+.+++........                ...--..+..       . .++
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~----------------~~~FgeGit~-------~-g~~   98 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG----------------KRYFGEGISD-------W-KDK   98 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC----------------TTCCEEEEEE-------E-TTE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC----------------CccceeEEEE-------e-CCE
Confidence            45889998 677777777766  8999999987654332211                0000011111       1 223


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccc
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                      +++..-.++.+.+||..+.+.+.++....      .-..++  +++..|+.+ .++.|.++|..+..    ....+.-..
T Consensus        99 ly~ltw~~~~v~v~D~~t~~~~~ti~~~~------eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~----v~~~I~V~~  166 (262)
T 3nol_A           99 IVGLTWKNGLGFVWNIRNLRQVRSFNYDG------EGWGLT--HNDQYLIMSDGTPVLRFLDPESLT----PVRTITVTA  166 (262)
T ss_dssp             EEEEESSSSEEEEEETTTCCEEEEEECSS------CCCCEE--ECSSCEEECCSSSEEEEECTTTCS----EEEEEECEE
T ss_pred             EEEEEeeCCEEEEEECccCcEEEEEECCC------CceEEe--cCCCEEEEECCCCeEEEEcCCCCe----EEEEEEecc
Confidence            44444568899999999999998887643      112344  567777765 67889999987632    112221111


Q ss_pred             cccc-cceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccc------------cCCeEEEEECCCCcEEEEee
Q 022019          219 EGQA-GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------------EGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       219 ~~~~-~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~  284 (304)
                      .+.. ..+..+.|.  ++.+++..-.++.|.+.|.++++.+..+...            ....+.++|+|+++.|+.+|
T Consensus       167 ~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          167 HGEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             TTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             CCccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            1111 234567776  4556665657889999999999988877632            12568999999998888887

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.17  E-value=1.9e-08  Score=81.70  Aligned_cols=190  Identities=13%  Similarity=0.035  Sum_probs=120.2

Q ss_pred             EcCCCCeEEEecC--CC---eEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEE
Q 022019           68 WSPDGSSFLTSSE--DK---TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (304)
Q Consensus        68 ~s~~~~~l~s~~~--dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (304)
                      ..|++++++++..  ..   +|.++|..+++....                  +..       ...| .++++|||++++
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~------------------i~~-------g~~p-~i~~spDg~~ly   81 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH------------------VNG-------GFLP-NPVAAHSGSEFA   81 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE------------------ecC-------CCCC-CeEECCCCCEEE
Confidence            3467776666543  22   889999886643211                  111       1234 556799999988


Q ss_pred             EEe----------CCCCEEEEEcCCCeeeEEeeccc--ccccccceEEEEECCCCcEEEEE--c-CCeEEEEEcCCCCcc
Q 022019          143 STT----------RDHPIHLWDATTGLLRCTYRAYD--AVDEITAAFSVAFNPTGTKIFAG--Y-NKSVRVFDVHRPGRD  207 (304)
Q Consensus       143 ~~~----------~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~--~-d~~i~v~d~~~~~~~  207 (304)
                      ++.          .++.|.+||..+.+....+....  ..........+.|+|||++|+++  . ++.|.++| .+. +.
T Consensus        82 v~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~-~~  159 (373)
T 2mad_H           82 LASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG-SS  159 (373)
T ss_pred             EEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC-CE
Confidence            886          36789999999888877766531  00001134589999999999954  3 57899999 763 21


Q ss_pred             ceeeee-eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-----cccCC-eEEEEECCCCcEE
Q 022019          208 FEKYST-LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-----GQEGG-VTHVQFSRDGNYL  280 (304)
Q Consensus       208 ~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~~l  280 (304)
                      .   .. +    .. .   .++.+.|++...+++.+.||.+.++|. +++.+....     ....+ .....+.+++..+
T Consensus       160 ~---~~~i----~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  227 (373)
T 2mad_H          160 D---DQLL----SS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI  227 (373)
T ss_pred             E---eEEc----CC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEE
Confidence            1   11 1    10 0   124556656667788889999999999 777653322     11122 2335667776666


Q ss_pred             EEeeccCCeEEEEecccc
Q 022019          281 YTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       281 ~~~~~~d~~i~vwd~~~~  298 (304)
                      +..+ .++.+.+.|+.++
T Consensus       228 ~~~~-~~~~v~vid~~~~  244 (373)
T 2mad_H          228 VWPV-YSGKILQADISAA  244 (373)
T ss_pred             EEEc-CCceEEEEeccCC
Confidence            6566 6788999988654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.14  E-value=3.2e-08  Score=80.61  Aligned_cols=195  Identities=15%  Similarity=0.153  Sum_probs=120.8

Q ss_pred             eeEEEEcCCCCeEEEecCC------CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC
Q 022019           63 LKGIKWSPDGSSFLTSSED------KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (304)
Q Consensus        63 V~~i~~s~~~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (304)
                      -..+..+|+| .++++..+      |.|.+.|..+.+..........              ...--+++.|       +|
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~--------------~~~~~Yd~~~-------~p  197 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRG--------------DQYLAYDFWW-------NL  197 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCT--------------TCCCCCCEEE-------ET
T ss_pred             ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCC--------------CccccceEEE-------CC
Confidence            4567788999 77766554      7899999987765433221100              0011123333       67


Q ss_pred             CccEEEEEe-------------------CCCCEEEEEcCCCeeeEEeecccccccccceEEEEE--CCCCcEEEEE----
Q 022019          137 TSCVFASTT-------------------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF--NPTGTKIFAG----  191 (304)
Q Consensus       137 ~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~----  191 (304)
                      +++.+++..                   .+.+|.+||+.+++...++.....   ......+.|  +|++++++++    
T Consensus       198 ~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~---g~~P~~i~f~~~Pdg~~aYV~~e~~  274 (462)
T 2ece_A          198 PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE---NRMALELRPLHDPTKLMGFINMVVS  274 (462)
T ss_dssp             TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT---EEEEEEEEECSSTTCCEEEEEEEEE
T ss_pred             CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC---CCccceeEeeECCCCCEEEEEEeee
Confidence            888888774                   367899999999888887776321   013345555  9999988843    


Q ss_pred             ---cCCeEEEEEcCCCCccceeeeeeeccc---c-----------ccccceeEEEeecCCCcEEEEEecCCeEEEEecC-
Q 022019          192 ---YNKSVRVFDVHRPGRDFEKYSTLKGNK---E-----------GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-  253 (304)
Q Consensus       192 ---~d~~i~v~d~~~~~~~~~~~~~~~~~~---~-----------~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-  253 (304)
                         .+++|.+|....  ..+.....+....   .           +.......+.++|++..++++.-..+.|.+||+. 
T Consensus       275 ~~~Lss~V~v~~~d~--g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          275 LKDLSSSIWLWFYED--GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             TTTCCEEEEEEEEET--TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             ccCCCceEEEEEecC--CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence               456888777653  2222222211000   0           0023478899999555555555557899999985 


Q ss_pred             --CceEeEEecccc--------------CCeEEEEECCCCcEEEEee
Q 022019          254 --NMELLYVLHGQE--------------GGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       254 --~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~  284 (304)
                        +.+.+..+....              +.-..+.++|||++|+++.
T Consensus       353 ~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          353 PFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence              235555554321              1357899999999999887

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.13  E-value=1.6e-08  Score=89.18  Aligned_cols=198  Identities=15%  Similarity=0.160  Sum_probs=118.5

Q ss_pred             eEEEEcCCCCeEEEecCCCe-------------EEEeeCCCCCCccccccccccccCCccceEEEeec----CCeEEEEe
Q 022019           64 KGIKWSPDGSSFLTSSEDKT-------------LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE----GESVYDFC  126 (304)
Q Consensus        64 ~~i~~s~~~~~l~s~~~dg~-------------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~  126 (304)
                      ..++|+ ||+.|+.++.+..             |.+|++.+....                .......    ......+.
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~----------------~~~v~~~~~~~~~~~~~~~  240 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED----------------DRLVFGAIPAQHHRYVGAT  240 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGG----------------CEEEESCSGGGCCSEEEEE
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCccc----------------ceEEEecCCCCCeEEEEEE
Confidence            578999 9999888877743             888888654211                0011111    11234454


Q ss_pred             ecCccceeCCCccEEEEEeC----CCCEEEEEcCCCe-eeEEeecccccccccceEEEEECCCCcEEE-EE-c---CCeE
Q 022019          127 WFPHMSASDPTSCVFASTTR----DHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-Y---NKSV  196 (304)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~---d~~i  196 (304)
                      |       +|+|++|+....    +..|+++|+.++. ....+.....     ..... |+++|..|+ .+ .   .+.|
T Consensus       241 ~-------SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~-----~~~~~-~~~~g~~l~~~t~~~~~~~~l  307 (693)
T 3iuj_A          241 V-------TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD-----ADVSL-VDNKGSTLYLLTNRDAPNRRL  307 (693)
T ss_dssp             E-------CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS-----SCEEE-EEEETTEEEEEECTTCTTCEE
T ss_pred             E-------cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC-----ceEEE-EeccCCEEEEEECCCCCCCEE
Confidence            4       889988765432    2479999998763 2333333322     33333 666666665 44 3   3679


Q ss_pred             EEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC--eEEEEecCCceEeEEec-cccCCeEEEEE
Q 022019          197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLH-GQEGGVTHVQF  273 (304)
Q Consensus       197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~-~~~~~v~~~~~  273 (304)
                      ..+|+..+...  .+..+.    .+...+.  .|+|++..++++...++  .|++||+..+. ...+. ...+.+..+.+
T Consensus       308 ~~~d~~~~~~~--~~~~l~----~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~  378 (693)
T 3iuj_A          308 VTVDAANPGPA--HWRDLI----PERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNG  378 (693)
T ss_dssp             EEEETTSCCGG--GCEEEE----CCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCC
T ss_pred             EEEeCCCCCcc--ccEEEe----cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeec
Confidence            99998764321  111221    1222233  88885555555555565  58899987543 34443 23456778888


Q ss_pred             CCCCcEEEEeeccC----CeEEEEecccceee
Q 022019          274 SRDGNYLYTGGRKD----PYILCWDLRKAVQV  301 (304)
Q Consensus       274 ~~~~~~l~~~~~~d----~~i~vwd~~~~~~~  301 (304)
                      +|++..|+... .+    +.|..||+.+++..
T Consensus       379 ~~d~~~l~~~~-ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          379 KHDDPALYFGF-ENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             CTTCSCEEEEE-ECSSSCCEEEEECTTTCCEE
T ss_pred             CCCCCEEEEEe-cCCCCCCEEEEEECCCCeEE
Confidence            99988776665 44    89999999877543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.10  E-value=1.1e-08  Score=81.06  Aligned_cols=158  Identities=10%  Similarity=0.017  Sum_probs=101.2

Q ss_pred             cceeCCCccEEEE-------EeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC-CcEEEEEcCCeEEEEEcC
Q 022019          131 MSASDPTSCVFAS-------TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAGYNKSVRVFDVH  202 (304)
Q Consensus       131 ~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~d~~i~v~d~~  202 (304)
                      .+++++++.++++       +..++.|.+||..+++.... ...........+.++.++++ +++++++..+.|.+||..
T Consensus        22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~  100 (314)
T 1pjx_A           22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD  100 (314)
T ss_dssp             EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE-ECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT
T ss_pred             CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE-EecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC
Confidence            3444778888887       57788999999887765432 21100011236889999999 776666655689999986


Q ss_pred             CCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC---------------CeEEEEecCCceEeEEeccccCC
Q 022019          203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---------------QTSAIYREDNMELLYVLHGQEGG  267 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~~  267 (304)
                       +.  ...+. ...........+.+++++| ++.++++...+               +.|..||.. ++..... .+...
T Consensus       101 -g~--~~~~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~  173 (314)
T 1pjx_A          101 -GT--FEEIA-KKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQF  173 (314)
T ss_dssp             -SC--EEECC-SBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESS
T ss_pred             -CC--EEEEE-eccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCC
Confidence             32  11110 1000011223478999999 66677766554               568888865 4433322 23445


Q ss_pred             eEEEEEC----CCCcEEEEeeccCCeEEEEecc
Q 022019          268 VTHVQFS----RDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       268 v~~~~~~----~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      ...++|+    |+|+.|+.+...++.|.+|++.
T Consensus       174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~  206 (314)
T 1pjx_A          174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK  206 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred             cceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence            6889999    9997766664267899999986

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.08  E-value=8.8e-09  Score=84.45  Aligned_cols=190  Identities=15%  Similarity=0.098  Sum_probs=120.9

Q ss_pred             CCCCeEEEecC-C----CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEE
Q 022019           70 PDGSSFLTSSE-D----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST  144 (304)
Q Consensus        70 ~~~~~l~s~~~-d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  144 (304)
                      ++++.++++.. +    +.|.++|..+.+....+.                         +-..| .++++|++++++++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~-------------------------vG~~P-gia~SpDgk~lyVa  135 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD-------------------------GGFLP-HPVAAEDGSFFAQA  135 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE-------------------------ECSSC-EEEECTTSSCEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE-------------------------CCCCC-ceEECCCCCEEEEE
Confidence            36665555443 2    799999998764432211                         11234 55679999988887


Q ss_pred             e----------CCCCEEEEEcCCCeeeEEeeccc--ccccccceEEEEECCCCcEEEEE--c-CCeEEEEEcCCCCccce
Q 022019          145 T----------RDHPIHLWDATTGLLRCTYRAYD--AVDEITAAFSVAFNPTGTKIFAG--Y-NKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       145 ~----------~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~--~-d~~i~v~d~~~~~~~~~  209 (304)
                      .          .++.|.++|..+++....+....  ..........+.|+|||++++++  . ++.|.++|+.+..    
T Consensus       136 n~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k----  211 (426)
T 3c75_H          136 STVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT----  211 (426)
T ss_dssp             EEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE----
T ss_pred             eccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe----
Confidence            6          46789999999999888776531  00001134578999999999965  2 5789999998741    


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEE----eccccCCe-EEEEECCCCcEEEEee
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV----LHGQEGGV-THVQFSRDGNYLYTGG  284 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v-~~~~~~~~~~~l~~~~  284 (304)
                      ....+..  .+      +....|++...+++.+.||.+.+.+..+++....    +.....++ ..+.|++++..++..+
T Consensus       212 vv~~I~v--~g------~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s  283 (426)
T 3c75_H          212 FDRMLDV--PD------CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT  283 (426)
T ss_dssp             EEEEEEC--CS------EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB
T ss_pred             EEEEEEc--CC------ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe
Confidence            1122211  10      1233454456777777888888888865554422    22112221 2356899998888777


Q ss_pred             ccCCeEEEEecccc
Q 022019          285 RKDPYILCWDLRKA  298 (304)
Q Consensus       285 ~~d~~i~vwd~~~~  298 (304)
                       ..+.+.+.|+..+
T Consensus       284 -~~g~V~ViD~~~~  296 (426)
T 3c75_H          284 -YTGKIFQADLTAE  296 (426)
T ss_dssp             -TTSEEEEEEECSS
T ss_pred             -CCCcEEEEeccCC
Confidence             7899999998654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.08  E-value=9.7e-07  Score=67.05  Aligned_cols=214  Identities=10%  Similarity=0.068  Sum_probs=125.8

Q ss_pred             eecCCCCceeEEEEcCCCCeE-EEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           55 TSSIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      .+.+-.+.+..++|+|++..| ++...++.|...|.. ++....                +.+........+++      
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~----------------i~l~g~~D~EGIa~------   77 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRT----------------IPLDFVKDLETIEY------   77 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEE----------------EECSSCSSEEEEEE------
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEE----------------EecCCCCChHHeEE------
Confidence            344556779999999976644 456678888888876 332211                11111123334443      


Q ss_pred             eCCCccEEEEEeCCCCEEEEEcCCCee---eEEeecc-cccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCC--CCc
Q 022019          134 SDPTSCVFASTTRDHPIHLWDATTGLL---RCTYRAY-DAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR--PGR  206 (304)
Q Consensus       134 ~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~--~~~  206 (304)
                       .+++.++++.-.++.+.++++.....   ....... ..........+++|+|.+..|+++ ......+|.+..  ...
T Consensus        78 -~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~  156 (255)
T 3qqz_A           78 -IGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN  156 (255)
T ss_dssp             -CSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS
T ss_pred             -eCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC
Confidence             56777666665677899998865432   2222211 111222357899999998777744 433444444431  111


Q ss_pred             cceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc---------CCeEEEEECCCC
Q 022019          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---------GGVTHVQFSRDG  277 (304)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~  277 (304)
                      ..................+.+++++|..+++++....+..+.++|.. ++++..+.-..         ..--.|+|.++|
T Consensus       157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G  235 (255)
T 3qqz_A          157 ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG  235 (255)
T ss_dssp             CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC
T ss_pred             ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC
Confidence            11111100000011223478999999888888888888999999975 55555543211         245889999999


Q ss_pred             cEEEEeeccCCeEEEEec
Q 022019          278 NYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       278 ~~l~~~~~~d~~i~vwd~  295 (304)
                      + |+.++ ..+.++.+.-
T Consensus       236 ~-lyIvs-E~n~~y~f~~  251 (255)
T 3qqz_A          236 N-IYIVS-EPNRFYRFTP  251 (255)
T ss_dssp             C-EEEEE-TTTEEEEEEC
T ss_pred             C-EEEEc-CCceEEEEEe
Confidence            7 66667 6776666644

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.08  E-value=2.3e-07  Score=69.50  Aligned_cols=185  Identities=14%  Similarity=0.168  Sum_probs=118.3

Q ss_pred             CceeEEEEcCCCCeEEEecCCC--eEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           61 NFLKGIKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      .....+.|++ +.++.+.+.+|  .|+.+|+.+++.........                ..--..+..       . .+
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~----------------~~fgeGi~~-------~-~~   75 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP----------------PYFGAGIVA-------W-RD   75 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT----------------TCCEEEEEE-------E-TT
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC----------------CcceeEEEE-------e-CC
Confidence            4566899986 66666767654  89999999876543321110                000011111       1 23


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeecc
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~  217 (304)
                      ++++..-.++.+.+||..+.+.+.+++...      .-..++  +++..|+++ .++.|.++|..+..    ....+.-.
T Consensus        76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~------~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~----~~~~I~V~  143 (243)
T 3mbr_X           76 RLIQLTWRNHEGFVYDLATLTPRARFRYPG------EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQ----QVGSIKVT  143 (243)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEEECSS------CCCEEE--ECSSCEEEECSSSEEEEECTTTCC----EEEEEECE
T ss_pred             EEEEEEeeCCEEEEEECCcCcEEEEEeCCC------CceEEe--eCCCEEEEECCCCeEEEEeCCCCe----EEEEEEEc
Confidence            444555578999999999999999888643      223454  567777765 78899999987642    11222111


Q ss_pred             cccc-ccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccc-------------cCCeEEEEECCCCcEEEEe
Q 022019          218 KEGQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-------------EGGVTHVQFSRDGNYLYTG  283 (304)
Q Consensus       218 ~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~  283 (304)
                      ..+. -..++.+.|.  ++.+++..-.+..|.+.|.++++.+..+...             ....+.++++|++..|+..
T Consensus       144 ~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT  221 (243)
T 3mbr_X          144 AGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT  221 (243)
T ss_dssp             ETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred             cCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence            1111 1235567766  4556665656889999999999988877521             1256899999988887777


Q ss_pred             e
Q 022019          284 G  284 (304)
Q Consensus       284 ~  284 (304)
                      |
T Consensus       222 G  222 (243)
T 3mbr_X          222 G  222 (243)
T ss_dssp             E
T ss_pred             C
Confidence            7

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.07  E-value=5e-07  Score=69.83  Aligned_cols=201  Identities=12%  Similarity=0.143  Sum_probs=121.2

Q ss_pred             CceeEEEEcCCCCeEE-EecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc-
Q 022019           61 NFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS-  138 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-  138 (304)
                      ..+.+++|++++..|+ +-..++.|.++++......                  ......      ...|..+++++++ 
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~------------------~~~~~~------~~~p~~ia~d~~~~   91 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT------------------TIIRQD------LGSPEGIALDHLGR   91 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE------------------EEECTT------CCCEEEEEEETTTT
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE------------------EEEECC------CCCccEEEEEecCC
Confidence            3578999999665544 5556789999998643210                  001110      0123344556654 


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-c--CCeEEEEEcCCCCccceeeeee
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-Y--NKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~--d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      .++++-...+.|.++++............     ......++++|++..|+ +. .  .+.|..+++....  ..   .+
T Consensus        92 ~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-----~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~--~~---~~  161 (267)
T 1npe_A           92 TIFWTDSQLDRIEVAKMDGTQRRVLFDTG-----LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--RR---IL  161 (267)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSS-----CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--CE---EE
T ss_pred             eEEEEECCCCEEEEEEcCCCCEEEEEECC-----CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC--cE---EE
Confidence            45555556778999998654322222111     12567999999766655 44 2  4688888876421  11   11


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      .   .........++++|+++.++++-...+.|.++|+........+.+ ......++..  +..|+.+....+.|.++|
T Consensus       162 ~---~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d  235 (267)
T 1npe_A          162 A---QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMD  235 (267)
T ss_dssp             E---CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             E---ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence            1   111234788999996666777777788999999976544333332 2234566654  556666653678999999


Q ss_pred             cccceee
Q 022019          295 LRKAVQV  301 (304)
Q Consensus       295 ~~~~~~~  301 (304)
                      ..+++.+
T Consensus       236 ~~~g~~~  242 (267)
T 1npe_A          236 LAISKEM  242 (267)
T ss_dssp             TTTTEEE
T ss_pred             CCCCCce
Confidence            9887654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.07  E-value=1.5e-07  Score=71.08  Aligned_cols=184  Identities=11%  Similarity=0.110  Sum_probs=120.2

Q ss_pred             CceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccE
Q 022019           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (304)
                      .....+.|+ ++.++.+.+.+|.|+++|+++++..... .                ........+..       . .+++
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l----------------~~~~FgeGit~-------~-g~~L  108 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R----------------LGNIFAEGLAS-------D-GERL  108 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E----------------CTTCCEEEEEE-------C-SSCE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C----------------CCCcceeEEEE-------e-CCEE
Confidence            345789997 4667778888999999999988764433 1                11000111211       1 2344


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeecccc
Q 022019          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (304)
Q Consensus       141 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~  219 (304)
                      ++..-.++.+.+||..+.+.+.++....      .-..++  ++++.|+.+ .++.|.++|..+.. ..   ..+.-...
T Consensus       109 y~ltw~~~~v~V~D~~Tl~~~~ti~~~~------eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~-v~---~~I~V~~~  176 (268)
T 3nok_A          109 YQLTWTEGLLFTWSGMPPQRERTTRYSG------EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFA-LV---GAVQVKLR  176 (268)
T ss_dssp             EEEESSSCEEEEEETTTTEEEEEEECSS------CCCCEE--EETTEEEEECSSSEEEEECTTTCC-EE---EEEECEET
T ss_pred             EEEEccCCEEEEEECCcCcEEEEEeCCC------ceeEEe--cCCCEEEEECCCCEEEEEcCCCCe-EE---EEEEeCCC
Confidence            5555578899999999999998888643      223444  567888866 78999999987642 11   22211111


Q ss_pred             c-cccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccc-------------cCCeEEEEECCCCcEEEEee
Q 022019          220 G-QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-------------EGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       220 ~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~  284 (304)
                      + .-..++.+.|.  ++.+++..-.++.|.+.|.++++.+..+...             ....+.|+|+|+++.|+.+|
T Consensus       177 g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          177 GQPVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CcccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            1 11235667777  4556665556889999999999988877532             13578999999887777666

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.00  E-value=1e-10  Score=95.14  Aligned_cols=144  Identities=15%  Similarity=0.135  Sum_probs=77.1

Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeee
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      ++..+++++.||.|+.||..+|+....+.. .      .+.+..+..++..++++ .|+.|+.||..++.....    ..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~----~~   76 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK----LP   76 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C------CSCCCC-----CCEEECTTTCCEEEC-----CCSEE----CS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C------CceecceEcCCCEEEEeCCCCEEEEEECCCCceeee----ee
Confidence            567899999999999999999998877765 2      34444455677677764 999999999976432211    11


Q ss_pred             cccccccccee-EEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          216 GNKEGQAGIMS-AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       216 ~~~~~~~~~v~-~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      ..   ....+. +..+.. + ..+++|+.++.|+.||.++++.+..+..+.    ...++|++..|++++ .|+.|+.||
T Consensus        77 ~~---~~~~~~~sp~~~~-~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~-~dg~v~a~d  146 (369)
T 2hz6_A           77 FT---IPELVQASPCRSS-D-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGR-TEYTITMYD  146 (369)
T ss_dssp             CC---HHHHHTTCSCC-------CCCCEEEEEEEEECCC--------------------------EEEEE-EEEEEECCC
T ss_pred             cc---CccccccCceEec-C-CEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEe-cCCEEEEEE
Confidence            00   000110 111112 3 367788889999999999999888776543    234567888999998 899999999


Q ss_pred             cccceee
Q 022019          295 LRKAVQV  301 (304)
Q Consensus       295 ~~~~~~~  301 (304)
                      .++|+.+
T Consensus       147 ~~tG~~~  153 (369)
T 2hz6_A          147 TKTRELR  153 (369)
T ss_dssp             SSSSSCC
T ss_pred             CCCCCEE
Confidence            9998754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.00  E-value=8.1e-07  Score=68.65  Aligned_cols=153  Identities=13%  Similarity=0.065  Sum_probs=97.0

Q ss_pred             ceeCCCc-cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccc
Q 022019          132 SASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       132 ~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~  208 (304)
                      +++++++ .++++-...+.|..+++..+.........     ......++++|++..++ +. ..+.|.++++....  .
T Consensus        41 i~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-----~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~  113 (267)
T 1npe_A           41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-----LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--R  113 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT-----CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--C
T ss_pred             EEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC-----CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC--E
Confidence            3446654 45555556789999998765443322211     12567999999876666 44 67899999986421  1


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEec--CCeEEEEecCCceEeEEe-ccccCCeEEEEECCCCcEEEEeec
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--SQTSAIYREDNMELLYVL-HGQEGGVTHVQFSRDGNYLYTGGR  285 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~  285 (304)
                      .   .+.   .........++++|+++.++++...  .+.|..+++.... ...+ ...-.....++++|++..|+.+..
T Consensus       114 ~---~~~---~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~  186 (267)
T 1npe_A          114 R---VLF---DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDA  186 (267)
T ss_dssp             E---EEE---CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred             E---EEE---ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEEC
Confidence            1   111   1111346789999955655555543  4788888875432 2222 222345789999999888877765


Q ss_pred             cCCeEEEEecccc
Q 022019          286 KDPYILCWDLRKA  298 (304)
Q Consensus       286 ~d~~i~vwd~~~~  298 (304)
                      ..+.|.++++...
T Consensus       187 ~~~~I~~~~~~g~  199 (267)
T 1npe_A          187 GTHRAECLNPAQP  199 (267)
T ss_dssp             TTTEEEEEETTEE
T ss_pred             CCCEEEEEecCCC
Confidence            6789999998754

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.00  E-value=5.4e-08  Score=81.99  Aligned_cols=191  Identities=14%  Similarity=0.131  Sum_probs=121.9

Q ss_pred             CCCeEEEec-CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC-CCccEEEEEe---
Q 022019           71 DGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD-PTSCVFASTT---  145 (304)
Q Consensus        71 ~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~~~~---  145 (304)
                      ||+++..+. .+++|.+.|+++.+....+                .+..+.....+++.      + |+++++++++   
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii----------------~ip~g~~phg~~~~------~~p~~~~v~~~~~~~  157 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAIL----------------EIPNAKGIHGLRPQ------KWPRSNYVFCNGEDE  157 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEE----------------ECSSCCSEEEEEEC------CSSBCSEEEEEECSC
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEE----------------eCCCCCCCcceeee------ecCCCcEEEEecccc
Confidence            788776655 4667999999876543211                11122223333321      3 6777777774   


Q ss_pred             ---------------CCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcC---------------C
Q 022019          146 ---------------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN---------------K  194 (304)
Q Consensus       146 ---------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d---------------~  194 (304)
                                     .++.+.+.|..+.+...++....      ....++++|+|+++++ +.+               .
T Consensus       158 ~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d  231 (595)
T 1fwx_A          158 TPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD  231 (595)
T ss_dssp             EESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred             cccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC------CccceEECCCCCEEEEEecCcccCcchhhccccccc
Confidence                           34578999999988887777543      2346889999999994 422               1


Q ss_pred             -----------------------eEEEEEcCCCCcccee-eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEE
Q 022019          195 -----------------------SVRVFDVHRPGRDFEK-YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY  250 (304)
Q Consensus       195 -----------------------~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~  250 (304)
                                             .|.+.|.++...  .. ...+.     -.....++.++||+..+++++..+..|.++
T Consensus       232 ~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~--~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V~~~~s~~VsVi  304 (595)
T 1fwx_A          232 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS--SLFTRYIP-----IANNPHGCNMAPDKKHLCVAGKLSPTVTVL  304 (595)
T ss_dssp             EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC--CSSEEEEE-----EESSCCCEEECTTSSEEEEECTTSSBEEEE
T ss_pred             eEEEeeccceeEeccCCCeeEECcEEEEeCcccCC--ceeEEEEe-----cCCCceEEEEcCCCCEEEEeCCCCCeEEEE
Confidence                                   244555543100  00 01110     011256799999666566666678999999


Q ss_pred             ecCCce------------EeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          251 REDNME------------LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       251 d~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      |+.+.+            .+..+.. ......++|+|+| ++++...-|+.|.+||+.++
T Consensus       305 d~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a  362 (595)
T 1fwx_A          305 DVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDA  362 (595)
T ss_dssp             EGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHH
T ss_pred             ECcccccccccccCcccceEEEcCC-CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHh
Confidence            998653            3444442 3457899999999 77777769999999999873

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.95  E-value=6e-08  Score=74.10  Aligned_cols=151  Identities=7%  Similarity=0.050  Sum_probs=99.1

Q ss_pred             ceeCCCccEEEEEeC--CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCcc
Q 022019          132 SASDPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD  207 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~  207 (304)
                      +.+++++.++++.+.  ++.|+++|+.+++....+......    ....++++  +..++ +. .++.+.++|..+.   
T Consensus        26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~----fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~---   96 (266)
T 2iwa_A           26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY----FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL---   96 (266)
T ss_dssp             EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC----CEEEEEEE--TTEEEEEETTCSEEEEEETTTT---
T ss_pred             EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc----ceEEEEEe--CCEEEEEEecCCEEEEEECCCC---
Confidence            344777766666553  578999999999988887653321    22345554  55666 45 7999999999763   


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc-----CCeEEEEECCCCcEEEE
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-----GGVTHVQFSRDGNYLYT  282 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~  282 (304)
                       +....+... .+     ....++++++.++ ++..++.|.++|..+.+.+..+....     ..++.+.|. +|. |++
T Consensus        97 -~v~~~i~~g-~~-----~g~glt~Dg~~l~-vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyv  166 (266)
T 2iwa_A           97 -SNIKNFTHQ-MK-----DGWGLATDGKILY-GSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWA  166 (266)
T ss_dssp             -EEEEEEECC-SS-----SCCEEEECSSSEE-EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEE
T ss_pred             -cEEEEEECC-CC-----CeEEEEECCCEEE-EECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEE
Confidence             222222211 01     1233556455555 45568899999999988888776322     136788888 675 554


Q ss_pred             eeccCCeEEEEecccceee
Q 022019          283 GGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       283 ~~~~d~~i~vwd~~~~~~~  301 (304)
                      ....++.|.+.|..+++.+
T Consensus       167 n~~~~~~V~vID~~tg~V~  185 (266)
T 2iwa_A          167 NIWQTDCIARISAKDGTLL  185 (266)
T ss_dssp             EETTSSEEEEEETTTCCEE
T ss_pred             ecCCCCeEEEEECCCCcEE
Confidence            4436889999999998654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.94  E-value=2.9e-07  Score=80.90  Aligned_cols=166  Identities=14%  Similarity=0.125  Sum_probs=103.1

Q ss_pred             eeCCCccEEEEEeCCCC-------------------EEEEEcCCCeeeEEeeccccc--c--cccceEEEEECCCCc---
Q 022019          133 ASDPTSCVFASTTRDHP-------------------IHLWDATTGLLRCTYRAYDAV--D--EITAAFSVAFNPTGT---  186 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~~--~--~~~~v~~i~~~~~~~---  186 (304)
                      +++|++.+++.+..++.                   |..+|.++|+.+..+......  .  ....+.......+|+   
T Consensus       241 ~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~  320 (689)
T 1yiq_A          241 AYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRK  320 (689)
T ss_dssp             EEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred             eEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEE
Confidence            45677788888887763                   999999999988777643210  0  111122222223554   


Q ss_pred             EEEEE-cCCeEEEEEcCCCCccceeeee---eecc-----------------ccccc-----------cceeEEEeecCC
Q 022019          187 KIFAG-YNKSVRVFDVHRPGRDFEKYST---LKGN-----------------KEGQA-----------GIMSAIAFSPTH  234 (304)
Q Consensus       187 ~l~~~-~d~~i~v~d~~~~~~~~~~~~~---~~~~-----------------~~~~~-----------~~v~~~~~~p~~  234 (304)
                      .++.+ .+|.++++|.+++.........   ....                 .....           ..-..++|+|+ 
T Consensus       321 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~-  399 (689)
T 1yiq_A          321 VLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPD-  399 (689)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETT-
T ss_pred             EEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCC-
Confidence            56655 8999999999875322110000   0000                 00000           01123788994 


Q ss_pred             CcEEEEEec---------------------------------------------CCeEEEEecCCceEeEEeccccCCeE
Q 022019          235 TGMLAIGSY---------------------------------------------SQTSAIYREDNMELLYVLHGQEGGVT  269 (304)
Q Consensus       235 ~~~l~~~~~---------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~v~  269 (304)
                      ..++++.+.                                             +|.|+.||+.+++.+..+..+. ++.
T Consensus       400 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~  478 (689)
T 1yiq_A          400 TGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFN  478 (689)
T ss_dssp             TTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCC
T ss_pred             CCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-Ccc
Confidence            445555432                                             3779999999999888877543 333


Q ss_pred             EEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       270 ~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      .-.+...+..++.++ .||.|+.||.++|+.+
T Consensus       479 ~g~~~tagglvf~gt-~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          479 GGTLSTAGNLVFEGS-ADGRVIAYAADTGEKL  509 (689)
T ss_dssp             CCEEEETTTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             CccceECCCEEEEEC-CCCcEEEEECCCCccc
Confidence            345556788899998 9999999999999876

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.88  E-value=4.7e-07  Score=79.38  Aligned_cols=167  Identities=13%  Similarity=0.118  Sum_probs=104.4

Q ss_pred             eeCCCccEEEEEeCCC-------------------CEEEEEcCCCeeeEEeeccccc----ccccceEEEEECCCC---c
Q 022019          133 ASDPTSCVFASTTRDH-------------------PIHLWDATTGLLRCTYRAYDAV----DEITAAFSVAFNPTG---T  186 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~----~~~~~v~~i~~~~~~---~  186 (304)
                      ++++++.+++.+..++                   .|..+|.++|+....+......    ........+....+|   .
T Consensus       249 ~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~  328 (677)
T 1kb0_A          249 TFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRK  328 (677)
T ss_dssp             EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEE
T ss_pred             eEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEee
Confidence            3466777777776654                   4999999999988777653210    001122233333466   5


Q ss_pred             EEEEE-cCCeEEEEEcCCCCccceeeeeeec---cccccccc------------------------eeEEEeecCCCcEE
Q 022019          187 KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG---NKEGQAGI------------------------MSAIAFSPTHTGML  238 (304)
Q Consensus       187 ~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~---~~~~~~~~------------------------v~~~~~~p~~~~~l  238 (304)
                      .++.+ .+|.++++|.+++............   .......+                        -..++|+|+ ..++
T Consensus       329 ~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~-~~~~  407 (677)
T 1kb0_A          329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ-TGLV  407 (677)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT-TTEE
T ss_pred             EEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCC-CCEE
Confidence            56655 9999999999875332111000000   00000000                        125788994 4455


Q ss_pred             EEEec-------------------------------------------CCeEEEEecCCceEeEEeccccCCeEEEEECC
Q 022019          239 AIGSY-------------------------------------------SQTSAIYREDNMELLYVLHGQEGGVTHVQFSR  275 (304)
Q Consensus       239 ~~~~~-------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  275 (304)
                      ++...                                           .|.|..||+.+++.+..+. +..++....+..
T Consensus       408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~  486 (677)
T 1kb0_A          408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTT  486 (677)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEE
T ss_pred             EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEe
Confidence            55433                                           2789999999999888776 334445555667


Q ss_pred             CCcEEEEeeccCCeEEEEecccceeee
Q 022019          276 DGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       276 ~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      ++..++.++ .||.+++||.++|+.+.
T Consensus       487 ~g~~v~~g~-~dg~l~a~D~~tG~~lw  512 (677)
T 1kb0_A          487 AGNVVFQGT-ADGRLVAYHAATGEKLW  512 (677)
T ss_dssp             TTTEEEEEC-TTSEEEEEETTTCCEEE
T ss_pred             CCCEEEEEC-CCCcEEEEECCCCceee
Confidence            788899888 99999999999998763

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.82  E-value=4.5e-06  Score=66.35  Aligned_cols=216  Identities=13%  Similarity=0.097  Sum_probs=114.6

Q ss_pred             CceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccc--cCCccceEEEeecCCeEEEEeecCccceeCC-C
Q 022019           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK--DQDSYEASLVVTEGESVYDFCWFPHMSASDP-T  137 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~  137 (304)
                      ....+++|+++|++++++..++.|..|+..++.............  ...................+       ++++ +
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi-------~~~~~~   91 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDI-------SYNLQN   91 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEE-------EEETTT
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceE-------EEcCCC
Confidence            446778999999878888889999999877543211000000000  00000000000000122333       3465 5


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECC-CCcEEEEEc------------------CCeEEE
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAGY------------------NKSVRV  198 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~------------------d~~i~v  198 (304)
                      +++++ +...+.|..+|..++... .+..............+++++ +|++.++..                  ++.|..
T Consensus        92 g~l~v-~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           92 NQLYI-VDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             TEEEE-EETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             CcEEE-EECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            55544 444444888887655432 221111001112467899999 998777542                  267888


Q ss_pred             EEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce--EeEEeccccCCeEEEEECCC
Q 022019          199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVQFSRD  276 (304)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~  276 (304)
                      ||.....  .   .....    .......++|+|++..++++-+.++.|.+|++....  ....+....+ ...++++++
T Consensus       170 ~d~~~~~--~---~~~~~----~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~  239 (322)
T 2fp8_A          170 YDPSTKE--T---TLLLK----ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD  239 (322)
T ss_dssp             EETTTTE--E---EEEEE----EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTT
T ss_pred             EeCCCCE--E---EEecc----CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCC
Confidence            8875421  1   11110    112356799999444355555667899999987421  1111111123 688999999


Q ss_pred             CcEEEEeecc----------CCeEEEEecc
Q 022019          277 GNYLYTGGRK----------DPYILCWDLR  296 (304)
Q Consensus       277 ~~~l~~~~~~----------d~~i~vwd~~  296 (304)
                      |.+.++.. .          .+.|..+|..
T Consensus       240 G~l~va~~-~~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          240 GHFWVSSS-EELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             SCEEEEEE-EETTSSTTSCEEEEEEEECTT
T ss_pred             CCEEEEec-CcccccccCCCccEEEEECCC
Confidence            98666554 3          3567777764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.81  E-value=6.3e-07  Score=79.68  Aligned_cols=197  Identities=10%  Similarity=0.095  Sum_probs=109.2

Q ss_pred             ceeEEEEc-CCCCeEEEecC-C----CeEEEeeCCCC-CCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           62 FLKGIKWS-PDGSSFLTSSE-D----KTLRIFSLPEN-GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        62 ~V~~i~~s-~~~~~l~s~~~-d----g~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+...+|| |||++||-+.. +    ..|+++|+.++ +....               .+.    .....+       ++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---------------~~~----~~~~~~-------~W  228 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD---------------KVS----GTNGEI-------VW  228 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC---------------CEE----EECSCC-------EE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc---------------ccc----CceeeE-------EE
Confidence            67889999 99998885432 2    35999999876 42100               000    001123       44


Q ss_pred             CCCccEEEEEeCC-----CCEEEEEcCCCeee--EEeecccccccccceEEEEECCCCcEEE-EE---cCCeEEEEEcCC
Q 022019          135 DPTSCVFASTTRD-----HPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRVFDVHR  203 (304)
Q Consensus       135 ~~~~~~l~~~~~d-----g~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~---~d~~i~v~d~~~  203 (304)
                      +|||+.|+....+     ..|+++++.++...  ..+.....    ....++.|+|||++|+ ++   ....|+++|+..
T Consensus       229 spDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~----~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          229 GPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNP----LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCT----TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             ecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCC----ceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            8899887777665     25888888776422  22322111    1456889999999988 33   245688888876


Q ss_pred             CCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC----CeEEEEecCCceEeEE-eccccC--CeEEEEECCC
Q 022019          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS----QTSAIYREDNMELLYV-LHGQEG--GVTHVQFSRD  276 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~--~v~~~~~~~~  276 (304)
                      +.... ....+.   ........++.|+. ++.+++....+    ..|..+|+.+...... +-.+..  .+..+.+.  
T Consensus       305 ~~~~~-~~~~l~---~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--  377 (751)
T 2xe4_A          305 GNAHN-TLEIVR---PREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--  377 (751)
T ss_dssp             CTTCC-CEEESS---CCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--
T ss_pred             CCCCc-eeEEee---cCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--
Confidence            42111 001111   22234445566655 66666665554    3577777764221122 222333  45556664  


Q ss_pred             CcEEEEeeccCCeEE--EEec
Q 022019          277 GNYLYTGGRKDPYIL--CWDL  295 (304)
Q Consensus       277 ~~~l~~~~~~d~~i~--vwd~  295 (304)
                      +..|+.....++..+  ++++
T Consensus       378 ~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          378 SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             SSEEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEEEEeCCEEEEEEEec
Confidence            445544443777644  4554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.81  E-value=1.9e-07  Score=81.85  Aligned_cols=208  Identities=8%  Similarity=0.086  Sum_probs=123.8

Q ss_pred             eEEEEcCCCCeEEEecCCC-------------------eEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEE
Q 022019           64 KGIKWSPDGSSFLTSSEDK-------------------TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD  124 (304)
Q Consensus        64 ~~i~~s~~~~~l~s~~~dg-------------------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  124 (304)
                      ..++++|++..++.+..++                   +|..+|..+++..........    +...           +.
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~----d~wd-----------~~  310 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG----DNWD-----------YT  310 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT----CCSC-----------CC
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC----cccc-----------cc
Confidence            4688999888888877664                   488888887765433221110    0000           00


Q ss_pred             EeecCccceeCCCc---cEEEEEeCCCCEEEEEcCCCeeeEEeeccccc------ccccce-------------------
Q 022019          125 FCWFPHMSASDPTS---CVFASTTRDHPIHLWDATTGLLRCTYRAYDAV------DEITAA-------------------  176 (304)
Q Consensus       125 ~~~~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~~v-------------------  176 (304)
                      ....|.......+|   ..++.++.+|.++++|..+|+.+.........      .....+                   
T Consensus       311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~  390 (677)
T 1kb0_A          311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY  390 (677)
T ss_dssp             CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred             cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence            00001111112255   57889999999999999999987766532110      000001                   


Q ss_pred             -----EEEEECCCCcEEEEE-cC-------------------------------------------CeEEEEEcCCCCcc
Q 022019          177 -----FSVAFNPTGTKIFAG-YN-------------------------------------------KSVRVFDVHRPGRD  207 (304)
Q Consensus       177 -----~~i~~~~~~~~l~~~-~d-------------------------------------------~~i~v~d~~~~~~~  207 (304)
                           ..++++|++.++++. .+                                           +.|..||+.++...
T Consensus       391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~  470 (677)
T 1kb0_A          391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA  470 (677)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred             cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence                 257889988887753 21                                           67899998875321


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc-CCeEEEEECCCCcEEEEeecc
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVQFSRDGNYLYTGGRK  286 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~  286 (304)
                          ....     +..++....+.. .+.++++++.||.+++||.++++.+.++.... ....-+.|.++|+.+++....
T Consensus       471 ----W~~~-----~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G  540 (677)
T 1kb0_A          471 ----WSVE-----HVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVG  540 (677)
T ss_dssp             ----EEEE-----ESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             ----eecC-----CCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEecc
Confidence                2211     112233344555 44577888999999999999999999987433 223445667788754433201


Q ss_pred             ----------------CCeEEEEecc
Q 022019          287 ----------------DPYILCWDLR  296 (304)
Q Consensus       287 ----------------d~~i~vwd~~  296 (304)
                                      .+.+.+|.+.
T Consensus       541 ~~~~~~~~~~~~~~~~~~~l~~f~l~  566 (677)
T 1kb0_A          541 WGGVYGLAARATERQGPGTVYTFVVG  566 (677)
T ss_dssp             CCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred             CCccccccccccccCCCCeEEEEecc
Confidence                            3677777775

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.78  E-value=8.3e-06  Score=64.81  Aligned_cols=200  Identities=10%  Similarity=0.023  Sum_probs=114.4

Q ss_pred             ceeEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC-Ccc
Q 022019           62 FLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP-TSC  139 (304)
Q Consensus        62 ~V~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~  139 (304)
                      .+.+|++.+ +|+++ .+...+.|..+|..++.......                ...+..    .-.|..+++++ +|+
T Consensus        81 ~p~gi~~~~~~g~l~-v~d~~~~i~~~d~~~g~~~~~~~----------------~~~~~~----~~~p~~i~~d~~~G~  139 (322)
T 2fp8_A           81 RTYDISYNLQNNQLY-IVDCYYHLSVVGSEGGHATQLAT----------------SVDGVP----FKWLYAVTVDQRTGI  139 (322)
T ss_dssp             CEEEEEEETTTTEEE-EEETTTEEEEECTTCEECEEEES----------------EETTEE----CSCEEEEEECTTTCC
T ss_pred             CCceEEEcCCCCcEE-EEECCCCEEEEeCCCCEEEEecc----------------cCCCCc----ccccceEEEecCCCE
Confidence            578899998 66544 44444558888866432110000                000000    01133345578 887


Q ss_pred             EEEEEeC-----------------CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEE
Q 022019          140 VFASTTR-----------------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFD  200 (304)
Q Consensus       140 ~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~v~d  200 (304)
                      ++++-..                 ++.|..+|..+++.........      ....++++|+++.|+++  ..+.|.+|+
T Consensus       140 l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~------~p~gia~~~dg~~lyv~d~~~~~I~~~~  213 (322)
T 2fp8_A          140 VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELH------VPGGAEVSADSSFVLVAEFLSHQIVKYW  213 (322)
T ss_dssp             EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEES------CCCEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCc------cCcceEECCCCCEEEEEeCCCCeEEEEE
Confidence            7766432                 3678888887776433222111      45689999999877744  668999999


Q ss_pred             cCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec----------CCeEEEEecCCceEeEEecccc----C
Q 022019          201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY----------SQTSAIYREDNMELLYVLHGQE----G  266 (304)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~----~  266 (304)
                      +.....  .....+.. ..   + ...+++++ ++.++++...          .+.|..+|. .++.+..+....    .
T Consensus       214 ~~~~~~--~~~~~~~~-~~---g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~  284 (322)
T 2fp8_A          214 LEGPKK--GTAEVLVK-IP---N-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGE  284 (322)
T ss_dssp             SSSTTT--TCEEEEEE-CS---S-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTS
T ss_pred             CCCCcC--CccceEEe-CC---C-CCCeEECC-CCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccc
Confidence            874211  11111111 11   2 67789999 5556655544          467888887 466666665332    3


Q ss_pred             CeEEEEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          267 GVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       267 ~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      .++.+++ .++...++.. .++.|..+++....
T Consensus       285 ~~~~~~~-~~g~L~v~~~-~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          285 HFEQIQE-HDGLLYIGTL-FHGSVGILVYDKKG  315 (322)
T ss_dssp             CCCEEEE-ETTEEEEECS-SCSEEEEEEC----
T ss_pred             cceEEEE-eCCEEEEeec-CCCceEEEeccccc
Confidence            4667776 3565555544 78899999987543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.78  E-value=5.1e-07  Score=71.89  Aligned_cols=141  Identities=10%  Similarity=0.081  Sum_probs=91.1

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      .+++.+++. +  +.|..+| .+++..........     .+.++..+++|...+++.++.+..+|...  ...   ...
T Consensus       185 d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~-----~~~~~~~~~~g~l~v~t~~~gl~~~~~~g--~~~---~~~  250 (330)
T 3hxj_A          185 GKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYW-----TVTRPAISEDGTIYVTSLDGHLYAINPDG--TEK---WRF  250 (330)
T ss_dssp             CTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSC-----CCSCCEECTTSCEEEEETTTEEEEECTTS--CEE---EEE
T ss_pred             cCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCc-----ceeceEECCCCeEEEEcCCCeEEEECCCC--CEe---EEe
Confidence            456665544 4  7799999 67766655543322     57788889988877777888898887432  211   111


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      ..    ....+.++.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|. |+.++ .+|.+++..
T Consensus       251 ~~----~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt-~~G~~~~~~  321 (330)
T 3hxj_A          251 KT----GKRIESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGT-RNGKFYALF  321 (330)
T ss_dssp             EC----SSCCCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEEC-TTSCEEEEE
T ss_pred             eC----CCCccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEc-CCCeEEEEe
Confidence            11    112233445555 44 5677888889999996 6776666665556677888888887 55577 799999887


Q ss_pred             cccc
Q 022019          295 LRKA  298 (304)
Q Consensus       295 ~~~~  298 (304)
                      ....
T Consensus       322 ~~~~  325 (330)
T 3hxj_A          322 NLEH  325 (330)
T ss_dssp             C---
T ss_pred             cccc
Confidence            7554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.78  E-value=2.6e-07  Score=69.80  Aligned_cols=145  Identities=11%  Similarity=0.128  Sum_probs=95.3

Q ss_pred             CccEEEEEeCCC--CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeee
Q 022019          137 TSCVFASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       137 ~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~  212 (304)
                      ++.++.+++.+|  .|+.+|+.+++....+....      ........+++..|+ +. .++.+.+||..+.    +.+.
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~------~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~----~~~~  121 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK------RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNL----RQVR  121 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT------TCCEEEEEEETTEEEEEESSSSEEEEEETTTC----CEEE
T ss_pred             CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC------ccceeEEEEeCCEEEEEEeeCCEEEEEECccC----cEEE
Confidence            567777887776  89999999999988877543      232322233455666 44 7999999999764    2222


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc-----CCeEEEEECCCCcEEEEeeccC
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-----GGVTHVQFSRDGNYLYTGGRKD  287 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~d  287 (304)
                      .+...  +     ....++++++ .|+.+..++.|.++|..+.+.+.++....     ..++.+.|. +|+ |++....+
T Consensus       122 ti~~~--~-----eG~glt~dg~-~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~  191 (262)
T 3nol_A          122 SFNYD--G-----EGWGLTHNDQ-YLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQT  191 (262)
T ss_dssp             EEECS--S-----CCCCEEECSS-CEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTS
T ss_pred             EEECC--C-----CceEEecCCC-EEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccC
Confidence            32211  1     1223335344 44444557889999999998888776422     335667886 675 44444378


Q ss_pred             CeEEEEecccceee
Q 022019          288 PYILCWDLRKAVQV  301 (304)
Q Consensus       288 ~~i~vwd~~~~~~~  301 (304)
                      +.|.+.|.++|+.+
T Consensus       192 ~~I~vIDp~tG~V~  205 (262)
T 3nol_A          192 NKIVRIDPETGKVT  205 (262)
T ss_dssp             SEEEEECTTTCBEE
T ss_pred             CeEEEEECCCCcEE
Confidence            89999999998764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.77  E-value=3.1e-05  Score=62.26  Aligned_cols=200  Identities=10%  Similarity=0.011  Sum_probs=117.3

Q ss_pred             CceeEEEEcCCCCe-EEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC-Cc
Q 022019           61 NFLKGIKWSPDGSS-FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP-TS  138 (304)
Q Consensus        61 ~~V~~i~~s~~~~~-l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~  138 (304)
                      ..+..++|++.... +++-...+.|..+++.......                 +....-       -.|..+++++ .+
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-----------------~~~~~~-------~~p~glavd~~~g  128 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-----------------VVSTGL-------ESPGGLAVDWVHD  128 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-----------------EECSSC-------SCCCEEEEETTTT
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-----------------EEeCCC-------CCccEEEEecCCC
Confidence            44788999975554 4454567888888876432110                 000000       1233344454 44


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cC-CeEEEEEcCCCCccceeeeeee
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN-KSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d-~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      +++++-...+.|.+.++............     ......++++|.+..|+ +. .. +.|..+++....  .   ..+.
T Consensus       129 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~-----l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--~---~~~~  198 (349)
T 3v64_C          129 KLYWTDSGTSRIEVANLDGAHRKVLLWQS-----LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--R---RIIA  198 (349)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECTT-----CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--C---EESC
T ss_pred             eEEEEcCCCCeEEEEcCCCCceEEEEeCC-----CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--c---EEEE
Confidence            55566566778999998754322222211     11567999999776666 44 44 788888876421  1   1111


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                         .........++++|+++.++++-+..+.|..+|+........+...-.....+++. .+ .|+.+....+.|..++.
T Consensus       199 ---~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~  273 (349)
T 3v64_C          199 ---DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANK  273 (349)
T ss_dssp             ---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEET
T ss_pred             ---ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEc
Confidence               11223468999998677777777778899999986543332333333456777773 34 44444437788888885


Q ss_pred             ccce
Q 022019          296 RKAV  299 (304)
Q Consensus       296 ~~~~  299 (304)
                      .+|+
T Consensus       274 ~~G~  277 (349)
T 3v64_C          274 FTGK  277 (349)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            5554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.76  E-value=3.3e-05  Score=60.89  Aligned_cols=202  Identities=14%  Similarity=0.086  Sum_probs=115.9

Q ss_pred             CceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccE
Q 022019           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (304)
                      ....+++|+++|+++++-..++.|..||......                   ........       |..+++++++++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-------------------~~~~~~~~-------p~gia~~~dG~l   85 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-------------------IHATVEGK-------VSGLAFTSNGDL   85 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-------------------EEEECSSE-------EEEEEECTTSCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-------------------EEEeCCCC-------ceeEEEcCCCcE
Confidence            4578999999999777777789999998763210                   11111123       334455888987


Q ss_pred             EEEEeCCC--CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeee-ee-
Q 022019          141 FASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST-LK-  215 (304)
Q Consensus       141 l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~-~~-  215 (304)
                      +++.....  .|..+|..+++..........    .....++..+++..+++. .++.|+++|............. .. 
T Consensus        86 ~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~----~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~  161 (306)
T 2p4o_A           86 VATGWNADSIPVVSLVKSDGTVETLLTLPDA----IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR  161 (306)
T ss_dssp             EEEEECTTSCEEEEEECTTSCEEEEEECTTC----SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred             EEEeccCCcceEEEEcCCCCeEEEEEeCCCc----cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence            66654432  477777777765433332111    123455556655555555 6889999997542100000000 00 


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC-ceE--eEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MEL--LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                      ............+  +|+++.++++-+..+.|..|++.. ++.  ...+.. ......++++++|++.++.. ..+.|.+
T Consensus       162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~-~~~~V~~  237 (306)
T 2p4o_A          162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATH-IYNSVVR  237 (306)
T ss_dssp             SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECB-TTCCEEE
T ss_pred             ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeC-CCCeEEE
Confidence            0001111224455  785556667777788999999864 321  111111 12356789999998766555 6789999


Q ss_pred             Eecc
Q 022019          293 WDLR  296 (304)
Q Consensus       293 wd~~  296 (304)
                      ++..
T Consensus       238 ~~~~  241 (306)
T 2p4o_A          238 IAPD  241 (306)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            9975

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.74  E-value=1.7e-05  Score=63.78  Aligned_cols=198  Identities=12%  Similarity=0.014  Sum_probs=118.3

Q ss_pred             CceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC-Ccc
Q 022019           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP-TSC  139 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~  139 (304)
                      +..+|.+..+++ +|+.+. ...|+..++......                  ...........++|       ++ ++.
T Consensus        34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~------------------~~~~~~~~~~~l~~-------d~~~~~   86 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYT------------------LLLNNLENAIALDF-------HHRREL   86 (349)
T ss_dssp             TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEE------------------EEECSCSCEEEEEE-------ETTTTE
T ss_pred             CCCcccccccCc-eeEeec-ccceEEEeCCCCeeE------------------EeecCCCceEEEEE-------eccccE
Confidence            445666666644 444333 345777776533211                  11122234556666       43 444


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeeeeecc
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~  217 (304)
                      ++++-...+.|+.+++..+..........     .....+++++.+..|+ +. ..+.|.++++.....     ..+.  
T Consensus        87 ly~~D~~~~~I~r~~~~g~~~~~~~~~~~-----~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-----~~l~--  154 (349)
T 3v64_C           87 VFWSDVTLDRILRANLNGSNVEEVVSTGL-----ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-----KVLL--  154 (349)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEE--
T ss_pred             EEEEeccCCceEEEecCCCCceEEEeCCC-----CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-----EEEE--
Confidence            55555567889999987655333322111     1456899998666665 54 678999999864211     1111  


Q ss_pred             ccccccceeEEEeecCCCcEEEEEecC-CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          218 KEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       218 ~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                       .........++++|.++.++++-..+ +.|..+++........+...-.....++++|++..|+.+....+.|..+++.
T Consensus       155 -~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          155 -WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             -CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             -eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence             11223468899999677677776666 8899998864332222222234578999999888787776467889999986


Q ss_pred             cc
Q 022019          297 KA  298 (304)
Q Consensus       297 ~~  298 (304)
                      ..
T Consensus       234 G~  235 (349)
T 3v64_C          234 GS  235 (349)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.73  E-value=1.4e-05  Score=65.20  Aligned_cols=201  Identities=9%  Similarity=0.026  Sum_probs=117.5

Q ss_pred             CCceeEEEEcCCCC-eEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC-
Q 022019           60 NNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT-  137 (304)
Q Consensus        60 ~~~V~~i~~s~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-  137 (304)
                      ...+..++|++.+. ++++-...+.|..+++.......                 +. ..+      ...|..+++++. 
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-----------------~~-~~~------~~~p~glavd~~~  170 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-----------------VV-STG------LESPGGLAVDWVH  170 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-----------------EE-CSS------CSCCCCEEEETTT
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-----------------EE-eCC------CCCccEEEEEeCC
Confidence            34577899997544 44455567888888876432100                 00 000      013344455654 


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cC-CeEEEEEcCCCCccceeeeee
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN-KSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d-~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      +.++++-...+.|.+.++........+...     ......++++|.+..|+ +. .. +.|..+++....  ..   .+
T Consensus       171 g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~-----l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~---~~  240 (386)
T 3v65_B          171 DKLYWTDSGTSRIEVANLDGAHRKVLLWQS-----LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RR---II  240 (386)
T ss_dssp             TEEEEEETTTTEEEECBTTSCSCEEEECSS-----CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CE---EE
T ss_pred             CeEEEEcCCCCeEEEEeCCCCceEEeecCC-----CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC--cE---EE
Confidence            455555556778888887644322222211     12567999999877776 43 44 788888876421  11   11


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      .   .........++|+|+++.++++-+..+.|..+|+........+.........+++. .+...++-. ..+.|..++
T Consensus       241 ~---~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~-~~~~V~~~~  315 (386)
T 3v65_B          241 A---DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDW-HTKSINSAN  315 (386)
T ss_dssp             E---CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEET-TTTEEEEEE
T ss_pred             E---ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeC-CCCeEEEEE
Confidence            1   11123467899998677777777778899999986543333333333456778883 344444444 788898888


Q ss_pred             cccce
Q 022019          295 LRKAV  299 (304)
Q Consensus       295 ~~~~~  299 (304)
                      ..+|+
T Consensus       316 ~~~G~  320 (386)
T 3v65_B          316 KFTGK  320 (386)
T ss_dssp             TTTCC
T ss_pred             CCCCc
Confidence            55553

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.67  E-value=2e-05  Score=64.28  Aligned_cols=158  Identities=12%  Similarity=-0.021  Sum_probs=99.6

Q ss_pred             CeEEEEeecCccceeCC-CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeE
Q 022019          120 ESVYDFCWFPHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSV  196 (304)
Q Consensus       120 ~~v~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i  196 (304)
                      .....++|       ++ ++.++++-...+.|+.+++..+.....+....     .....+++++.+..|+ +- ..+.|
T Consensus       116 ~~~~gl~~-------d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~-----~~p~glavd~~~g~lY~~d~~~~~I  183 (386)
T 3v65_B          116 ENAIALDF-------HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL-----ESPGGLAVDWVHDKLYWTDSGTSRI  183 (386)
T ss_dssp             SCEEEEEE-------ETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC-----SCCCCEEEETTTTEEEEEETTTTEE
T ss_pred             CccEEEEE-------ecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC-----CCccEEEEEeCCCeEEEEcCCCCeE
Confidence            34556666       43 44555555567889999987665433322111     1446789998666665 54 67788


Q ss_pred             EEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC-CeEEEEecCCceEeEEeccccCCeEEEEECC
Q 022019          197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHVQFSR  275 (304)
Q Consensus       197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  275 (304)
                      .++++....  .   ..+.   .........++++|.++.++++-... +.|..+++............-.....++|+|
T Consensus       184 ~~~~~dg~~--~---~~l~---~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~  255 (386)
T 3v65_B          184 EVANLDGAH--R---KVLL---WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDY  255 (386)
T ss_dssp             EECBTTSCS--C---EEEE---CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEG
T ss_pred             EEEeCCCCc--e---EEee---cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeC
Confidence            888876421  1   1111   11223468899999667666666555 7899998865433322333334578999998


Q ss_pred             CCcEEEEeeccCCeEEEEeccc
Q 022019          276 DGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       276 ~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      ++..|+.+....+.|..+++..
T Consensus       256 ~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          256 AGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             GGTEEEEEETTTTEEEEECTTS
T ss_pred             CCCEEEEEECCCCEEEEEeCCC
Confidence            8887777764678899999864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.67  E-value=4.8e-06  Score=68.95  Aligned_cols=156  Identities=16%  Similarity=0.164  Sum_probs=99.2

Q ss_pred             cCccceeCC-CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-c-CC----eEEEEE
Q 022019          128 FPHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y-NK----SVRVFD  200 (304)
Q Consensus       128 ~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d~----~i~v~d  200 (304)
                      .|..++++| ++..|.++...+.|+.+|+..+........ .     .....++|+++++.|+++ . ++    .+.+++
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~-~-----~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~  211 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG-L-----SKVRTICWTHEADSMIITNDQNNNDRPNNYILT  211 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC-C-----SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC-C-----CCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence            566777887 355565555558899999987765443331 1     267899999999966644 2 22    344444


Q ss_pred             cCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-cccCCeEEEEECCCCcE
Q 022019          201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRDGNY  279 (304)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~  279 (304)
                      ....   +.....+.     .......++++|+++.++++-..++.|..++...+....... +.......++|+|+|++
T Consensus       212 ~~g~---~~~~~~l~-----~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~  283 (430)
T 3tc9_A          212 RESG---FKVITELT-----KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY  283 (430)
T ss_dssp             GGGT---SCSEEEEE-----ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred             CCCc---eeeeeeec-----cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence            3221   11001111     112356788999667777777778999999998765422222 12234689999999997


Q ss_pred             EEEeeccCCeEEEEeccc
Q 022019          280 LYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       280 l~~~~~~d~~i~vwd~~~  297 (304)
                      |+.+....+.|..++...
T Consensus       284 lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          284 AYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEEETTTTEEEEEEEET
T ss_pred             EEEEECCCCEEEEEeCCc
Confidence            766654788999988763

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.65  E-value=1.8e-06  Score=68.68  Aligned_cols=142  Identities=10%  Similarity=0.077  Sum_probs=91.9

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      .+++. +..++.++.|..+|.. ++....+.....     .+.++..++++..++++  +.+..+| ..+.. .   ...
T Consensus       145 ~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~-----~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~-~---~~~  210 (330)
T 3hxj_A          145 SEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDA-----ITSAASIGKDGTIYFGS--DKVYAIN-PDGTE-K---WNF  210 (330)
T ss_dssp             CTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSC-----CCSCCEECTTCCEEEES--SSEEEEC-TTSCE-E---EEE
T ss_pred             cCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCC-----ceeeeEEcCCCEEEEEe--CEEEEEC-CCCcE-E---EEE
Confidence            44555 5567778889999988 776655554332     56677888888866655  8899999 43221 1   111


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                          ......+.++...+ ++ .+.+++.++.|..+|. +++.+..+......+.++.+.++|. |+.++ .+|.|..+|
T Consensus       211 ----~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t-~~ggl~~~d  281 (330)
T 3hxj_A          211 ----YAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGS-YDGHLYAIN  281 (330)
T ss_dssp             ----CCSSCCCSCCEECT-TS-CEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEEC-TTCEEEEEC
T ss_pred             ----ccCCcceeceEECC-CC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEec-CCCCEEEEC
Confidence                11224467778887 44 4566777888988885 5566666654444445566666665 66676 788899999


Q ss_pred             ccccee
Q 022019          295 LRKAVQ  300 (304)
Q Consensus       295 ~~~~~~  300 (304)
                      . +++.
T Consensus       282 ~-~g~~  286 (330)
T 3hxj_A          282 P-DGTE  286 (330)
T ss_dssp             T-TSCE
T ss_pred             C-CCcE
Confidence            6 5544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.65  E-value=5.7e-06  Score=62.01  Aligned_cols=144  Identities=12%  Similarity=0.101  Sum_probs=94.2

Q ss_pred             ccEEEEEeCCC--CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeee
Q 022019          138 SCVFASTTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       138 ~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      +.++.+.+.+|  .|+.+|+.+++...........    .-..+++.  +..|+ .. .++.+.+||..+.    +.+..
T Consensus        31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~----fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl----~~~~t  100 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY----FGAGIVAW--RDRLIQLTWRNHEGFVYDLATL----TPRAR  100 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC----CEEEEEEE--TTEEEEEESSSSEEEEEETTTT----EEEEE
T ss_pred             CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc----ceeEEEEe--CCEEEEEEeeCCEEEEEECCcC----cEEEE
Confidence            55667767654  8999999999998887765421    11234443  55566 44 8999999999763    22333


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc-----CCeEEEEECCCCcEEEEeeccCC
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-----GGVTHVQFSRDGNYLYTGGRKDP  288 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~d~  288 (304)
                      +...  + .+  ..++  ++++.+ +++..++.|.++|..+.+.+.++....     ..++.+.|. +|+..+..- .+.
T Consensus       101 i~~~--~-~G--wglt--~dg~~L-~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw-~s~  170 (243)
T 3mbr_X          101 FRYP--G-EG--WALT--SDDSHL-YMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW-LTS  170 (243)
T ss_dssp             EECS--S-CC--CEEE--ECSSCE-EEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET-TTT
T ss_pred             EeCC--C-Cc--eEEe--eCCCEE-EEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC-CCC
Confidence            3221  1 11  2343  534444 445568899999999998888876422     245677776 666444444 678


Q ss_pred             eEEEEecccceee
Q 022019          289 YILCWDLRKAVQV  301 (304)
Q Consensus       289 ~i~vwd~~~~~~~  301 (304)
                      .|.+.|.++|+.+
T Consensus       171 ~I~vIDp~tG~V~  183 (243)
T 3mbr_X          171 RIARIDPASGKVV  183 (243)
T ss_dssp             EEEEECTTTCBEE
T ss_pred             eEEEEECCCCCEE
Confidence            9999999999764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.64  E-value=8.7e-07  Score=67.03  Aligned_cols=144  Identities=12%  Similarity=0.088  Sum_probs=95.8

Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeeee
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      ++.++++.+.+|.|+.+|+.+++....+ ....    .....+++.  +..|+ +. .++.+.+||..+.    +.+..+
T Consensus        64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~----~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl----~~~~ti  132 (268)
T 3nok_A           64 QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN----IFAEGLASD--GERLYQLTWTEGLLFTWSGMPP----QRERTT  132 (268)
T ss_dssp             TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT----CCEEEEEEC--SSCEEEEESSSCEEEEEETTTT----EEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC----cceeEEEEe--CCEEEEEEccCCEEEEEECCcC----cEEEEE
Confidence            4567888888899999999999988877 4331    012345554  44555 34 8999999999763    222333


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecccc-----CCeEEEEECCCCcEEEEeeccCCe
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-----GGVTHVQFSRDGNYLYTGGRKDPY  289 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~d~~  289 (304)
                      ...  + .  -..++  ++++ .|+.+..++.|.++|..+.+.+.++....     ..++.+.|. +|+ |++....++.
T Consensus       133 ~~~--~-e--GwGLt--~Dg~-~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~  202 (268)
T 3nok_A          133 RYS--G-E--GWGLC--YWNG-KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSD  202 (268)
T ss_dssp             ECS--S-C--CCCEE--EETT-EEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSE
T ss_pred             eCC--C-c--eeEEe--cCCC-EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCe
Confidence            221  1 1  12344  4244 55555668999999999998888876322     245778887 775 4444436889


Q ss_pred             EEEEecccceee
Q 022019          290 ILCWDLRKAVQV  301 (304)
Q Consensus       290 i~vwd~~~~~~~  301 (304)
                      |.+.|.++++.+
T Consensus       203 I~vIDp~TG~V~  214 (268)
T 3nok_A          203 VLEIDPATGTVV  214 (268)
T ss_dssp             EEEECTTTCBEE
T ss_pred             EEEEeCCCCcEE
Confidence            999999999754

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.63  E-value=6.5e-05  Score=59.49  Aligned_cols=151  Identities=15%  Similarity=0.032  Sum_probs=90.7

Q ss_pred             CCC-ccEEEEEeCCCCEEEEEcCCC---eeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccc
Q 022019          135 DPT-SCVFASTTRDHPIHLWDATTG---LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       135 ~~~-~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~  208 (304)
                      ++. +.++++-...+.|+.+++...   .....+....    .....++++++.+..|+ +- ..+.|.++|+...  ..
T Consensus        38 d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~----~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~--~~  111 (316)
T 1ijq_A           38 EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV--KR  111 (316)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEC--------CEEEECSS----CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS--SE
T ss_pred             EeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC----CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC--ce
Confidence            544 445555556788999998751   2222221111    11456899997665555 54 7789999998642  11


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEecC-CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccC
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD  287 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d  287 (304)
                      .   .+.   .........++++|.++.++++.... +.|..+++............-.....++++|++..|+.+....
T Consensus       112 ~---~~~---~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~  185 (316)
T 1ijq_A          112 K---TLF---RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  185 (316)
T ss_dssp             E---EEE---ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             E---EEE---ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCC
Confidence            1   111   11123468899999666666665444 7898888754322222222234578999999888887776467


Q ss_pred             CeEEEEeccc
Q 022019          288 PYILCWDLRK  297 (304)
Q Consensus       288 ~~i~vwd~~~  297 (304)
                      +.|..+|+..
T Consensus       186 ~~I~~~d~dg  195 (316)
T 1ijq_A          186 HSISSIDVNG  195 (316)
T ss_dssp             TEEEEEETTS
T ss_pred             CeEEEEecCC
Confidence            7999999864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.60  E-value=0.00014  Score=60.25  Aligned_cols=163  Identities=12%  Similarity=0.105  Sum_probs=97.9

Q ss_pred             ecCccceeCC-CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCC
Q 022019          127 WFPHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHR  203 (304)
Q Consensus       127 ~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~  203 (304)
                      ..|..++++| ++.++++-..++.|+.+|..++.....+.....   ......++|+|+++.|+ +. ..+.|+.++...
T Consensus       228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~---~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT---KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC---CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred             CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC---CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence            3466677788 677666666778899999887765222221111   11334799999999666 44 678999988763


Q ss_pred             CCccceeeeeeecc--c---------cccccceeEEEe---------ecCCCcEEEEEecCCeEEEEecCCceEeEEecc
Q 022019          204 PGRDFEKYSTLKGN--K---------EGQAGIMSAIAF---------SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (304)
Q Consensus       204 ~~~~~~~~~~~~~~--~---------~~~~~~v~~~~~---------~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  263 (304)
                      ....+.....+...  .         ...-.....+++         .+ ++.++++-..++.|+.++. ++... ++-+
T Consensus       305 ~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G  381 (433)
T 4hw6_A          305 ETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDRDSHTVRVLTP-EGRVT-TYAG  381 (433)
T ss_dssp             TTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEETTTTEEEEECT-TSEEE-EEEC
T ss_pred             CCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEECCCCEEEEECC-CCCEE-EEEe
Confidence            22211111111110  0         011223567888         55 6767777777889999985 45432 3321


Q ss_pred             c------------------cCCeEEEEEC-CCCcEEEEeeccCCeEEEEecc
Q 022019          264 Q------------------EGGVTHVQFS-RDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       264 ~------------------~~~v~~~~~~-~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      .                  -.....++++ ++|.++++=. .+++|+.++++
T Consensus       382 ~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~-~n~rIr~i~~e  432 (433)
T 4hw6_A          382 RGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC-DNHRVRKIAPE  432 (433)
T ss_dssp             CCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG-GGTEEEEEEEC
T ss_pred             CCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC-CCCEEEEEecC
Confidence            1                  1236789999 5565444444 77889888764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.60  E-value=0.00016  Score=59.92  Aligned_cols=164  Identities=9%  Similarity=0.099  Sum_probs=94.9

Q ss_pred             cCccceeCC-CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCC
Q 022019          128 FPHMSASDP-TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRP  204 (304)
Q Consensus       128 ~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~  204 (304)
                      .|..++++| ++.++++-..++.|..++...+..........    ......++|+|++++|+ +. ..+.|..++....
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~----~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~  302 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD----SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWK  302 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS----SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC----CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcc
Confidence            466667788 67777776678899999988765432222211    12467899999999666 44 7889999887642


Q ss_pred             Cccceeeeeeeccc--cc---------ccccee-EEEeec-------CCCcEEEEEecCCeEEEEecCCceEeEEecc--
Q 022019          205 GRDFEKYSTLKGNK--EG---------QAGIMS-AIAFSP-------THTGMLAIGSYSQTSAIYREDNMELLYVLHG--  263 (304)
Q Consensus       205 ~~~~~~~~~~~~~~--~~---------~~~~v~-~~~~~p-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--  263 (304)
                      ...+.....+....  .+         .-.... .++..+       ..+.++++=..++.|+.++. .+......-.  
T Consensus       303 ~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~  381 (430)
T 3tc9_A          303 TKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGS  381 (430)
T ss_dssp             TTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCT
T ss_pred             cccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCC
Confidence            11111111111110  00         011123 455532       13556666666788999984 4543322210  


Q ss_pred             --c----c---------CCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          264 --Q----E---------GGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       264 --~----~---------~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                        .    .         .....++++|++..|+.+...+..|+.++++
T Consensus       382 ~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          382 NGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence              0    1         1468899999544455554377888888764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.59  E-value=4.8e-07  Score=72.94  Aligned_cols=148  Identities=12%  Similarity=0.038  Sum_probs=96.8

Q ss_pred             cCccceeCCCccEEEEEe----------CCCCEEEEEcCCCeeeEEeecccccc--cccceEEEEECCCCcEEEEE-c--
Q 022019          128 FPHMSASDPTSCVFASTT----------RDHPIHLWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIFAG-Y--  192 (304)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~-~--  192 (304)
                      .| .+.++|++++++++.          .++.|.+||+.+++....+.......  .......+.++|||++++++ .  
T Consensus        67 ~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~  145 (368)
T 1mda_H           67 LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS  145 (368)
T ss_dssp             TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred             CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCC
Confidence            34 456799999888886          36889999999999998887541100  00134579999999999965 2  


Q ss_pred             CCeEEE--EEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC-----ceEeE----Ee
Q 022019          193 NKSVRV--FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-----MELLY----VL  261 (304)
Q Consensus       193 d~~i~v--~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-----~~~~~----~~  261 (304)
                      +..+.+  +|+.+    .   ..+..  .+      +..+.|++...+++.+.||.+.+.|+..     ++...    .+
T Consensus       146 ~~~v~V~~iD~~t----v---~~i~v--~~------~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i  210 (368)
T 1mda_H          146 SAAAGLSVPGASD----D---QLTKS--AS------CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ  210 (368)
T ss_dssp             SCEEEEEETTTEE----E---EEEEC--SS------CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred             CCeEEEEEEchhh----c---eEEEC--CC------ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeee
Confidence            467888  88854    1   11110  11      1223454566677778899998899886     44331    12


Q ss_pred             ccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          262 HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       262 ~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      .....+.   . ++++..++..+ . +.+.+.|+.+
T Consensus       211 ~vg~~P~---~-~~~~~~~~~vs-~-~~V~viD~~~  240 (368)
T 1mda_H          211 NCSSQAA---Q-ANYPGMLVWAV-A-SSILQGDIPA  240 (368)
T ss_dssp             CBCSCCE---E-ETTTTEEEECB-S-SCCEEEECCS
T ss_pred             eCCCCcc---c-cccCCEEEEEc-C-CEEEEEECCC
Confidence            2223343   3 66677777777 6 8999999864

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.58  E-value=8.4e-06  Score=66.26  Aligned_cols=200  Identities=6%  Similarity=0.025  Sum_probs=107.7

Q ss_pred             CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeE-EEEeecCccceeCCCccEEEEEeCCCC
Q 022019           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV-YDFCWFPHMSASDPTSCVFASTTRDHP  149 (304)
Q Consensus        71 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~l~~~~~dg~  149 (304)
                      .+..++.++.++.|..+|..+++..............        ......+ ....         .++..+++++.++.
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~--------~~~~~~~~~~~~---------~~~~~v~v~~~~g~  114 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWF--------SKEPALLSGGVT---------VSGGHVYIGSEKAQ  114 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CC--------SCCCCCEEEEEE---------EETTEEEEEETTSE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccc--------cccCcccccCce---------EeCCEEEEEcCCCE
Confidence            4567778888999999999887654332211100000        0000111 1111         13446777888999


Q ss_pred             EEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeecccccc-ccceeEE
Q 022019          150 IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ-AGIMSAI  228 (304)
Q Consensus       150 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~v~~~  228 (304)
                      |..+|..+++...........     ....... ++..++.+.++.|..+|.+++.....    ........ .......
T Consensus       115 l~a~d~~tG~~~W~~~~~~~~-----~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~----~~~~~~~~~~~~~~~~  184 (376)
T 3q7m_A          115 VYALNTSDGTVAWQTKVAGEA-----LSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWT----VNLDMPSLSLRGESAP  184 (376)
T ss_dssp             EEEEETTTCCEEEEEECSSCC-----CSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEE----EECCC-----CCCCCC
T ss_pred             EEEEECCCCCEEEEEeCCCce-----EcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEE----EeCCCCceeecCCCCc
Confidence            999999999887766554321     1111121 34444445899999999977532221    11100000 0000112


Q ss_pred             EeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCC----eE---EEEECC--CCcEEEEeeccCCeEEEEecccce
Q 022019          229 AFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG----VT---HVQFSR--DGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       229 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----v~---~~~~~~--~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                      ...  ++ .+++++.++.+..+|..+++.+.........    +.   .+.-.|  .+..++.++ .++.|..+|.++|+
T Consensus       185 ~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~-~~g~l~~~d~~tG~  260 (376)
T 3q7m_A          185 TTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA-YNGNLTALDLRSGQ  260 (376)
T ss_dssp             EEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEEC-TTSCEEEEETTTCC
T ss_pred             EEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe-cCcEEEEEECCCCc
Confidence            222  23 5777888999999999988877665422100    00   000111  244566666 67788888887776


Q ss_pred             ee
Q 022019          300 QV  301 (304)
Q Consensus       300 ~~  301 (304)
                      .+
T Consensus       261 ~~  262 (376)
T 3q7m_A          261 IM  262 (376)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.58  E-value=0.00013  Score=57.70  Aligned_cols=205  Identities=7%  Similarity=0.003  Sum_probs=116.6

Q ss_pred             CCceeEEEEcCCCC-eEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC-C
Q 022019           60 NNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP-T  137 (304)
Q Consensus        60 ~~~V~~i~~s~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~  137 (304)
                      ...+.+++|++++. .+++-...+.|..+++......             .... ......      .-.|..+++++ .
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~-------------~~~~-~~~~~~------~~~p~glavd~~~   88 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-------------SSYD-TVISRD------IQAPDGLAVDWIH   88 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------CE-EEECSS------CSCCCEEEEETTT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC-------------cccE-EEEeCC------CCCcCEEEEeecC
Confidence            44578999998655 4455556789999988642100             0000 001000      01234445554 4


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cC-CeEEEEEcCCCCccceeeeee
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN-KSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d-~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      ++++++-...+.|.++++.............     .....++++|.+..|+ +. .. +.|..+++....  .   ..+
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-----~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~---~~~  158 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--I---YSL  158 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTT-----CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--E---EEE
T ss_pred             CeEEEEECCCCEEEEEeCCCCceEEEEECCC-----CCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--e---EEE
Confidence            4555565677889999987543332222111     1567999999766666 44 33 788888875421  1   111


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE--eEEeccccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL--LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                      .   .........++++|+++.++++-+..+.|..+|+.....  +......-.....+++. .+...++-. ..+.|..
T Consensus       159 ~---~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~-~~~~V~~  233 (316)
T 1ijq_A          159 V---TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDI-INEAIFS  233 (316)
T ss_dssp             E---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEET-TTTEEEE
T ss_pred             E---ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEEC-CCCeEEE
Confidence            1   112234779999996777777777788999999864322  22211122345677774 344444444 7889999


Q ss_pred             Eecccce
Q 022019          293 WDLRKAV  299 (304)
Q Consensus       293 wd~~~~~  299 (304)
                      ++..+|+
T Consensus       234 ~~~~~g~  240 (316)
T 1ijq_A          234 ANRLTGS  240 (316)
T ss_dssp             EETTTCC
T ss_pred             EeCCCCc
Confidence            9876664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.55  E-value=7e-05  Score=59.00  Aligned_cols=191  Identities=10%  Similarity=0.075  Sum_probs=105.8

Q ss_pred             CceeEEEEcCCCCeEEEecC-CC-eEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           61 NFLKGIKWSPDGSSFLTSSE-DK-TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~-dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      ..+.++++.++|+++++... ++ .|..++..++......                ..........++       ..+++
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~----------------~~~~~~~~~g~~-------~~~~~  128 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL----------------TLPDAIFLNGIT-------PLSDT  128 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE----------------ECTTCSCEEEEE-------ESSSS
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEE----------------eCCCccccCccc-------ccCCC
Confidence            46889999999986665433 22 4666666554321100                000001111111       12344


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEE-eecc----cccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCccceee
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCT-YRAY----DAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~----~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~  211 (304)
                      ..+++-..++.|+.+|...++.... ....    ...........+  +|+++.|+++  ..+.|..||+...+. ....
T Consensus       129 ~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~-~~~~  205 (306)
T 2p4o_A          129 QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK-PGEP  205 (306)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSC-BCCC
T ss_pred             cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC-CCcc
Confidence            4455555678899999775532111 1100    000111134555  7888877744  678999999874211 1111


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE--eEEeccccCCeEEEEEC---CCCcEEEEee
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL--LYVLHGQEGGVTHVQFS---RDGNYLYTGG  284 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~---~~~~~l~~~~  284 (304)
                      ..+..     ......+++++ ++.++++....+.|.++|.. ++.  +..+.......++++|.   |++..|+.+.
T Consensus       206 ~~~~~-----~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          206 EIFVE-----QTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             EEEEE-----SCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             EEEec-----cCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence            11110     12356789999 56677776678899999975 544  22344333568999998   8988887766

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.55  E-value=7.9e-06  Score=71.88  Aligned_cols=209  Identities=15%  Similarity=0.171  Sum_probs=120.8

Q ss_pred             CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEE
Q 022019           72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH  151 (304)
Q Consensus        72 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  151 (304)
                      +..++.++.++.|..+|..+++..............  ...     ....+      ....+  ..+..+++++.|+.|+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~--~~~-----~~~~~------~~~~~--~~~g~v~v~~~dg~l~  134 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRA--GEA-----CCDAV------NRGVA--VWKGKVYVGVLDGRLE  134 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGG--GGC-----TTCSC------CCCCE--EETTEEEEECTTSEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcccc--ccc-----cccCC------CCccE--EECCEEEEEccCCEEE
Confidence            556777778899999999988765443321100000  000     00000      00001  1345688888999999


Q ss_pred             EEEcCCCeeeEEeecc-cccccccceEEEEECC---CCcEEEEE------cCCeEEEEEcCCCCccceeeeeeecccc--
Q 022019          152 LWDATTGLLRCTYRAY-DAVDEITAAFSVAFNP---TGTKIFAG------YNKSVRVFDVHRPGRDFEKYSTLKGNKE--  219 (304)
Q Consensus       152 i~d~~~~~~~~~~~~~-~~~~~~~~v~~i~~~~---~~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~~~~~~~--  219 (304)
                      .+|.++|+.+..+... .. .   ....+..+|   ++..++.+      .++.|+.||.+++...............  
T Consensus       135 AlDa~TG~~~W~~~~~~~~-~---~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~  210 (689)
T 1yiq_A          135 AIDAKTGQRAWSVDTRADH-K---RSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP  210 (689)
T ss_dssp             EEETTTCCEEEEEECCSCT-T---SCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred             EEECCCCCEeeeecCcCCC-C---CCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence            9999999988776653 11 0   001111122   45555432      2689999999886433221110000000  


Q ss_pred             ---------------------ccccceeEEEeecCCCcEEEEEecCCe-------------------EEEEecCCceEeE
Q 022019          220 ---------------------GQAGIMSAIAFSPTHTGMLAIGSYSQT-------------------SAIYREDNMELLY  259 (304)
Q Consensus       220 ---------------------~~~~~v~~~~~~p~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~  259 (304)
                                           +.......++++| ...++++++.++.                   |..+|.++++.+-
T Consensus       211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W  289 (689)
T 1yiq_A          211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVW  289 (689)
T ss_dssp             CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEE
T ss_pred             ccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeE
Confidence                                 1111123678899 5567888887763                   9999999999887


Q ss_pred             Eecc--cc-------CCeEEEEECCCCc---EEEEeeccCCeEEEEecccceee
Q 022019          260 VLHG--QE-------GGVTHVQFSRDGN---YLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       260 ~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      .+..  |.       ..+.-.....+|+   .|+.++ .+|.++++|.++|+.+
T Consensus       290 ~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          290 HYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-KNGFFYVIDRATGELL  342 (689)
T ss_dssp             EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred             eeecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC-CCCeEEEEECCCCCEe
Confidence            7763  22       1222222223565   788888 9999999999999876

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.55  E-value=0.00014  Score=59.61  Aligned_cols=207  Identities=7%  Similarity=0.014  Sum_probs=116.7

Q ss_pred             CCCceeEEEEcCCCCe-EEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC-
Q 022019           59 PNNFLKGIKWSPDGSS-FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP-  136 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~-l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-  136 (304)
                      ....+..|+|++.+.. +++-...+.|..+++......             .....+....-..       |..+++++ 
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~-------------~~~~~~~~~~~~~-------p~glavD~~  169 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-------------SSYDTVISRDIQA-------PDGLAVDWI  169 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------CCCEEEECSSCSC-------EEEEEEETT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC-------------CcceEEEeCCCCC-------cccEEEEec
Confidence            3456889999985554 444455778888887642100             0000011101122       22334454 


Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE--cCCeEEEEEcCCCCccceeeee
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~--~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      .++++++-...+.|.+.++........+....     .....|+++|.+..|+ +-  ..+.|...++....  ..   .
T Consensus       170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~-----~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~--~~---~  239 (400)
T 3p5b_L          170 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IY---S  239 (400)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCSEEEEEECSS-----CCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS--CE---E
T ss_pred             CCceEEEECCCCeEEEEeCCCCceEEEEeCCC-----CCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc--cE---E
Confidence            45556666667889999987554333332211     1567999999776666 43  24788888886421  11   1


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc--ccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--QEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                      +.   ...-.....++++|+++.++++-+..+.|..+|+........+..  .-....++++.  +..|+.+....+.|.
T Consensus       240 ~~---~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~  314 (400)
T 3p5b_L          240 LV---TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF  314 (400)
T ss_dssp             EE---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEE
T ss_pred             EE---ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEE
Confidence            11   112234788999986776777666778999999865433222222  22345677763  334444433678898


Q ss_pred             EEeccccee
Q 022019          292 CWDLRKAVQ  300 (304)
Q Consensus       292 vwd~~~~~~  300 (304)
                      .+|..+|+.
T Consensus       315 ~~~~~~G~~  323 (400)
T 3p5b_L          315 SANRLTGSD  323 (400)
T ss_dssp             EEESSSCCC
T ss_pred             EEEcCCCCc
Confidence            888666643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.54  E-value=7.9e-05  Score=66.24  Aligned_cols=206  Identities=6%  Similarity=-0.021  Sum_probs=117.1

Q ss_pred             CCCceeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           59 PNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        59 h~~~V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      ....+..|+|.+. +.++++-...+.|+.+++.......             ... ..+..      -...|..+++++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~-------------~~~-~vi~~------~l~~P~GLAvD~~  481 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-------------SYD-TVISR------DIQAPDGLAVDWI  481 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------CE-EEECS------SCSCCCEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCc-------------cee-EEEec------CCCCcceeeeeec
Confidence            3456778999884 4445555566788888876321100             000 01100      0123444555655


Q ss_pred             c-cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-c-CCeEEEEEcCCCCccceeeee
Q 022019          138 S-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-Y-NKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       138 ~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~-d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      + +++++-...+.|.+.++........+....     .....|+++|.+..|+ +- . .+.|...++....  .   ..
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l-----~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~--~---~~  551 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--I---YS  551 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTT-----CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--E---EE
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCC-----CCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc--e---EE
Confidence            5 455555667889999987544332222111     1577999999866666 43 3 3778888886421  1   11


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc--ccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--QEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                      +.   .........|++++..+.++++=...+.|..+++........+..  .-....+|++.  +.+|+.+....+.|.
T Consensus       552 lv---~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~  626 (791)
T 3m0c_C          552 LV---TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF  626 (791)
T ss_dssp             EE---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             EE---eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEE
Confidence            11   112245789999986776777666678899999865443333332  12234566663  445666554678888


Q ss_pred             EEecccce
Q 022019          292 CWDLRKAV  299 (304)
Q Consensus       292 vwd~~~~~  299 (304)
                      ..+..+|+
T Consensus       627 ~~dk~tG~  634 (791)
T 3m0c_C          627 SANRLTGS  634 (791)
T ss_dssp             EEETTTCC
T ss_pred             EEeCCCCc
Confidence            88866664

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.53  E-value=0.00018  Score=56.98  Aligned_cols=201  Identities=8%  Similarity=0.047  Sum_probs=118.1

Q ss_pred             ceeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC-Ccc
Q 022019           62 FLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP-TSC  139 (304)
Q Consensus        62 ~V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~  139 (304)
                      .+..++|.+. +..+.+-...+.|..+++.......                .+....       ...|..+++++ .+.
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~----------------~~~~~~-------l~~p~glavd~~~g~   92 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ----------------NVVVSG-------LLSPDGLACDWLGEK   92 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC----------------EEEEEC-------CSCCCEEEEETTTTE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE----------------EEEcCC-------CCCccEEEEEcCCCe
Confidence            4678999985 4455555667889888886432100                010000       01234445554 455


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE--cCCeEEEEEcCCCCccceeeeeeec
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVRVFDVHRPGRDFEKYSTLKG  216 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~--~d~~i~v~d~~~~~~~~~~~~~~~~  216 (304)
                      ++++-...+.|.++++............     ......++++|.+..|+ +.  ..+.|..+++....  ..   .+. 
T Consensus        93 ly~~d~~~~~I~~~~~dG~~~~~l~~~~-----~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~---~~~-  161 (318)
T 3sov_A           93 LYWTDSETNRIEVSNLDGSLRKVLFWQE-----LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS--RF---III-  161 (318)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEECSS-----CSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS--CE---EEE-
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEEeCC-----CCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC--eE---EEE-
Confidence            5566566788999998654322222111     12567999999766666 43  25788888876421  11   111 


Q ss_pred             cccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       217 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                        ...-.....++++|+++.++++=+..+.|..+|+........+.+.......+++.. +..+.+-. ..+.|..++..
T Consensus       162 --~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~-~~~~V~~~~~~  237 (318)
T 3sov_A          162 --NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDW-STHSILACNKY  237 (318)
T ss_dssp             --CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEET-TTTEEEEEETT
T ss_pred             --ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEec-CCCeEEEEECC
Confidence              111234679999997777777777788999999864332222232334456777753 33334444 78899999987


Q ss_pred             ccee
Q 022019          297 KAVQ  300 (304)
Q Consensus       297 ~~~~  300 (304)
                      +|+.
T Consensus       238 ~G~~  241 (318)
T 3sov_A          238 TGEG  241 (318)
T ss_dssp             TCCS
T ss_pred             CCCc
Confidence            6653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.53  E-value=1.6e-05  Score=64.64  Aligned_cols=148  Identities=12%  Similarity=0.098  Sum_probs=89.8

Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEeeccccccc--ccceEEEEECC--CCcEEE-EEcCCeEEEEEcCCCCccceeee
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE--ITAAFSVAFNP--TGTKIF-AGYNKSVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~v~~i~~~~--~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~  212 (304)
                      +..++++..++.+..+|..+++.............  ...+..+.-.|  .+..++ ++.++.+..+|.+++....    
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w----  263 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMW----  263 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEE----
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEe----
Confidence            34677788899999999999988766654321000  00000011111  134455 5588999999998753221    


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc-ccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                      ...      ......+...   +..+++++.++.|..+|..+++.+..... ....+.....  .+..|+.++ .+|.|.
T Consensus       264 ~~~------~~~~~~~~~~---~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~-~~g~l~  331 (376)
T 3q7m_A          264 KRE------LGSVNDFIVD---GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGD-SEGYLH  331 (376)
T ss_dssp             EEC------CCCEEEEEEE---TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEEC-TTSEEE
T ss_pred             ecc------CCCCCCceEE---CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEe-CCCeEE
Confidence            111      1112333333   33677788899999999999988776652 2222333333  256788888 899999


Q ss_pred             EEecccceee
Q 022019          292 CWDLRKAVQV  301 (304)
Q Consensus       292 vwd~~~~~~~  301 (304)
                      ++|..+|+.+
T Consensus       332 ~~d~~tG~~~  341 (376)
T 3q7m_A          332 WINVEDGRFV  341 (376)
T ss_dssp             EEETTTCCEE
T ss_pred             EEECCCCcEE
Confidence            9999998765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.48  E-value=3.4e-05  Score=60.37  Aligned_cols=165  Identities=13%  Similarity=0.094  Sum_probs=104.6

Q ss_pred             cCccceeCCCc-cEEEEEeCCCCEEEEEcCCCeeeEEeecccc---cccccceEEEEE---CCCCcEEEEEc--------
Q 022019          128 FPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDA---VDEITAAFSVAF---NPTGTKIFAGY--------  192 (304)
Q Consensus       128 ~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~v~~i~~---~~~~~~l~~~~--------  192 (304)
                      .|.+..+++.. .++++.-..++|..||...+..... .....   ......+.++.|   +|+++++++..        
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence            34445555544 4444444799999999876644433 22210   111224679999   78888877543        


Q ss_pred             ------CCeEEEEEcC---CCCccceeeeeeeccccc-------cccceeEEEeecCCCcEEEEEecC-CeEEEEecCCc
Q 022019          193 ------NKSVRVFDVH---RPGRDFEKYSTLKGNKEG-------QAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNM  255 (304)
Q Consensus       193 ------d~~i~v~d~~---~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~  255 (304)
                            +..+..||+.   ++.....  ..+.....+       .......++..+ .++.+++++.- +.|..++....
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~--~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWS--VNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEE--EESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSC
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEE--ecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCC
Confidence                  5789999998   4322111  111111011       123478999999 78888989988 88888887543


Q ss_pred             eEeEEec------cccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          256 ELLYVLH------GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       256 ~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                       .+..+.      ......+.|+++|+|..|++.. ..|.|..+|+++.
T Consensus       170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~-~~g~L~~fD~~~p  216 (334)
T 2p9w_A          170 -TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG-GPRALTAFDVSKP  216 (334)
T ss_dssp             -CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES-SSSSEEEEECSSS
T ss_pred             -EEeeeeecCCCcccccCcceEEEeCCCCEEEEEc-CCCeEEEEcCCCC
Confidence             222221      1122467999999999999998 6999999998743

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.47  E-value=0.00025  Score=58.08  Aligned_cols=159  Identities=14%  Similarity=0.021  Sum_probs=96.7

Q ss_pred             CeEEEEeecCccceeCC-CccEEEEEeCCCCEEEEEcCCCe----eeEEeecccccccccceEEEEECCCCcEEE-EE-c
Q 022019          120 ESVYDFCWFPHMSASDP-TSCVFASTTRDHPIHLWDATTGL----LRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-Y  192 (304)
Q Consensus       120 ~~v~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~  192 (304)
                      ..+..++|       ++ ++.++++-...+.|+.+++....    ........     ......+++++.+..|+ +- .
T Consensus       112 ~~~~~l~~-------d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~-----~~~p~glavD~~~~~lY~~d~~  179 (400)
T 3p5b_L          112 RNVVALDT-------EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-----IQAPDGLAVDWIHSNIYWTDSV  179 (400)
T ss_dssp             SCEEEEEE-------ETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS-----CSCEEEEEEETTTTEEEEEETT
T ss_pred             CcceEEee-------eeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC-----CCCcccEEEEecCCceEEEECC
Confidence            45566666       44 34455555567788888886521    22222211     12567899998655555 54 6


Q ss_pred             CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec-CCeEEEEecCCceEeEEeccccCCeEEE
Q 022019          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAIYREDNMELLYVLHGQEGGVTHV  271 (304)
Q Consensus       193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~  271 (304)
                      .+.|.+.++....  .   ..+.   .........++++|.++.++++-.. .+.|...++........+...-.....|
T Consensus       180 ~~~I~~~~~~g~~--~---~~l~---~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~gl  251 (400)
T 3p5b_L          180 LGTVSVADTKGVK--R---KTLF---RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI  251 (400)
T ss_dssp             TTEEEEECTTTCS--E---EEEE---ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             CCeEEEEeCCCCc--e---EEEE---eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEE
Confidence            7899999886421  1   1111   1122336899999966656655433 4789999886543333333333567899


Q ss_pred             EECCCCcEEEEeeccCCeEEEEecccc
Q 022019          272 QFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       272 ~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      +++|++..|+.+....+.|..+|+...
T Consensus       252 avd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          252 TLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            999988888877646788999998643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.44  E-value=0.00042  Score=62.21  Aligned_cols=215  Identities=10%  Similarity=0.103  Sum_probs=127.0

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      ...|.++...++|.+.+ |+.++-+.+||..++..........    ...      ......|.++..       +++|.
T Consensus       214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~----~~~------~l~~~~i~~i~~-------d~~g~  275 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPS----NPK------SISSNYIRSLAM-------DSQNR  275 (795)
T ss_dssp             CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTT----CTT------SCSCSBEEEEEE-------CTTSC
T ss_pred             CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCC----Ccc------ccCCCeEEEEEE-------cCCCC
Confidence            45688888888776555 4444448888876543211100000    000      001245666654       55666


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeeccc--ccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeecc
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYD--AVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN  217 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  217 (304)
                      +.+ |+.+| |.+||..++..........  .......|.++..+++|.+.+++.++.|..|+....  .+..+......
T Consensus       276 lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~--~~~~~~~~~~~  351 (795)
T 4a2l_A          276 LWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRN--RFKNIRNIPYK  351 (795)
T ss_dssp             EEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGG--SSEEECCCTTS
T ss_pred             EEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcc--cceEEcCCCCC
Confidence            544 44454 8999988776543322111  111223799999999998887777788999987542  11111111000


Q ss_pred             ccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec--------cccCCeEEEEECCCCcEEEEeeccCCe
Q 022019          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--------GQEGGVTHVQFSRDGNYLYTGGRKDPY  289 (304)
Q Consensus       218 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~~d~~  289 (304)
                      ..-....|.++...+ ++ .|.+|+.++-|..||..++....-..        .....|.++...++|..|..|+ .++-
T Consensus       352 ~~l~~~~V~~i~~d~-~g-~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt-~~~G  428 (795)
T 4a2l_A          352 NSLSDNVVSCIVEDK-DK-NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT-HAGG  428 (795)
T ss_dssp             SSCSCSSEEEEEECT-TS-CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE-TTTE
T ss_pred             CCCCCCeeEEEEECC-CC-CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe-CcCc
Confidence            011234588888887 44 35668888889999987654322211        1235689999988998566666 6677


Q ss_pred             EEEEecccce
Q 022019          290 ILCWDLRKAV  299 (304)
Q Consensus       290 i~vwd~~~~~  299 (304)
                      |..||..+++
T Consensus       429 l~~~d~~~~~  438 (795)
T 4a2l_A          429 LSILHRNSGQ  438 (795)
T ss_dssp             EEEEETTTCC
T ss_pred             eeEEeCCCCc
Confidence            9999987764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.41  E-value=5.7e-05  Score=66.22  Aligned_cols=167  Identities=14%  Similarity=0.104  Sum_probs=98.7

Q ss_pred             eeCCCccEEEEEeCCC-------------------CEEEEEcCCCeeeEEeecccccc----cccceEEEEECCCCc---
Q 022019          133 ASDPTSCVFASTTRDH-------------------PIHLWDATTGLLRCTYRAYDAVD----EITAAFSVAFNPTGT---  186 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~~~----~~~~v~~i~~~~~~~---  186 (304)
                      +++++..+++.+..++                   .|..+|.++|+.+..++......    ...+.....+..+|+   
T Consensus       236 a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~  315 (668)
T 1kv9_A          236 AYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRK  315 (668)
T ss_dssp             EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE
T ss_pred             EEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEE
Confidence            4556667788887665                   39999999999887776532100    011222223333564   


Q ss_pred             EEEEE-cCCeEEEEEcCCCCccceee------e-eee--------c-c-c-cc--------c--ccceeEEEeecCCCcE
Q 022019          187 KIFAG-YNKSVRVFDVHRPGRDFEKY------S-TLK--------G-N-K-EG--------Q--AGIMSAIAFSPTHTGM  237 (304)
Q Consensus       187 ~l~~~-~d~~i~v~d~~~~~~~~~~~------~-~~~--------~-~-~-~~--------~--~~~v~~~~~~p~~~~~  237 (304)
                      .++.+ .+|.++++|..++.......      . .+.        . . . .+        .  ...-..++++|+.+.+
T Consensus       316 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~  395 (668)
T 1kv9_A          316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLV  395 (668)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEE
T ss_pred             EEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEE
Confidence            45554 99999999988753221000      0 000        0 0 0 00        0  0001236788844433


Q ss_pred             EEEE-----------------------------------ecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEE
Q 022019          238 LAIG-----------------------------------SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYT  282 (304)
Q Consensus       238 l~~~-----------------------------------~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  282 (304)
                      ++..                                   ..+|.|..||+.+++.+-....+. ......+...+.+|+.
T Consensus       396 yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~  474 (668)
T 1kv9_A          396 YIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQ  474 (668)
T ss_dssp             EEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEE
T ss_pred             EEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEE
Confidence            3311                                   123789999999999887776432 3333344456788888


Q ss_pred             eeccCCeEEEEecccceee
Q 022019          283 GGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       283 ~~~~d~~i~vwd~~~~~~~  301 (304)
                      ++ .|+.|++||.++|+.+
T Consensus       475 g~-~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          475 GT-AAGQMHAYSADKGEAL  492 (668)
T ss_dssp             EC-TTSEEEEEETTTCCEE
T ss_pred             EC-CcccchhhhhhcChhh
Confidence            98 9999999999999765

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.40  E-value=0.00031  Score=53.36  Aligned_cols=164  Identities=11%  Similarity=0.109  Sum_probs=101.5

Q ss_pred             CeEEEEeecCccceeCCCc-cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEE
Q 022019          120 ESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVR  197 (304)
Q Consensus       120 ~~v~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~  197 (304)
                      ..+..++|       +|++ .++++...++.|...|+. ++....+.....    .....|++.+++.++++. .++.+.
T Consensus        27 ~~lSGla~-------~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~----~D~EGIa~~~~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           27 NNISSLTW-------SAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV----KDLETIEYIGDNQFVISDERDYAIY   94 (255)
T ss_dssp             SCEEEEEE-------ETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC----SSEEEEEECSTTEEEEEETTTTEEE
T ss_pred             cCcceeEE-------eCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC----CChHHeEEeCCCEEEEEECCCCcEE
Confidence            45777777       4444 456667788999999987 887777765332    256789999999877776 778999


Q ss_pred             EEEcCCCCccceeeeeeecc--ccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC---ceEeEEec-------ccc
Q 022019          198 VFDVHRPGRDFEKYSTLKGN--KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN---MELLYVLH-------GQE  265 (304)
Q Consensus       198 v~d~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~-------~~~  265 (304)
                      ++++..... ..........  ..........++|+|.++ .|+++.+.....||..+.   ...+..+.       .+.
T Consensus        95 ~~~v~~~~~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~  172 (255)
T 3qqz_A           95 VISLTPNSE-VKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL  172 (255)
T ss_dssp             EEEECTTCC-EEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred             EEEcCCCCe-eeeeeeeccccccccccCCcceEEEeCCCC-EEEEEECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence            999876442 1111222111  112344578999999544 455555544445554431   11111111       123


Q ss_pred             CCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       266 ~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      ..+.+++++|....|+..+.....|.++|...
T Consensus       173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g  204 (255)
T 3qqz_A          173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVG  204 (255)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred             CCceeEEEcCCCCeEEEEECCCCeEEEEcCCC
Confidence            35789999997666555554777888888653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.40  E-value=9.7e-05  Score=63.48  Aligned_cols=56  Identities=7%  Similarity=0.048  Sum_probs=40.7

Q ss_pred             CCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          244 SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       244 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +|.|..||+.+++.+.++... ..+.+..+...+..++.++ .||.|+.||.++|+.+
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~-~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYAT-LDGYLKALDNKDGKEL  498 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEc-CCCeEEEEECCCCCEE
Confidence            478999999999887777532 2222222233466788888 8999999999999876

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.39  E-value=0.0003  Score=55.64  Aligned_cols=159  Identities=12%  Similarity=0.034  Sum_probs=96.5

Q ss_pred             eEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEE
Q 022019          121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRV  198 (304)
Q Consensus       121 ~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v  198 (304)
                      ....+.|.+.      ++.++++-...+.|+.+++..+.....+....    .....++++++.+..|+ +- ..+.|.+
T Consensus        36 ~~~~ld~d~~------~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~----l~~p~glavd~~~g~ly~~d~~~~~I~~  105 (318)
T 3sov_A           36 DAAAVDFVFS------HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG----LLSPDGLACDWLGEKLYWTDSETNRIEV  105 (318)
T ss_dssp             EEEEEEEEGG------GTEEEEEETTTTEEEEEETTSSSCCCEEEEEC----CSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccEEEEEEeC------CCEEEEEECCCCcEEEEEccCCCceEEEEcCC----CCCccEEEEEcCCCeEEEEECCCCEEEE
Confidence            4556666332      34555555667889999987653211111111    11456899998665555 54 7789999


Q ss_pred             EEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEe-cCCeEEEEecCCceEeEEeccccCCeEEEEECCCC
Q 022019          199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG  277 (304)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  277 (304)
                      +++.....     ..+.   .........++++|.++.++++-. ..+.|..+++........+...-..-..++++|++
T Consensus       106 ~~~dG~~~-----~~l~---~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~  177 (318)
T 3sov_A          106 SNLDGSLR-----KVLF---WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEE  177 (318)
T ss_dssp             EETTSCSC-----EEEE---CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTT
T ss_pred             EECCCCcE-----EEEE---eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccC
Confidence            99864211     1111   122234688999995565555542 35789888876432222222223456899999988


Q ss_pred             cEEEEeeccCCeEEEEeccc
Q 022019          278 NYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       278 ~~l~~~~~~d~~i~vwd~~~  297 (304)
                      ..|+.+....+.|..+|+..
T Consensus       178 ~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          178 QKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTS
T ss_pred             CEEEEEECCCCEEEEEcCCC
Confidence            88877764778999999864

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.37  E-value=0.00014  Score=63.78  Aligned_cols=207  Identities=12%  Similarity=0.047  Sum_probs=114.2

Q ss_pred             EEEEcC-CCCeEEEecCCC-----------eEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           65 GIKWSP-DGSSFLTSSEDK-----------TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        65 ~i~~s~-~~~~l~s~~~dg-----------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      .+++.+ +++.++.|+.++           .+.+||..++......              .....+....       ...
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--------------~~~~~~~~~~-------~~~  248 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--------------VTVTKHDMFC-------PGI  248 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--------------EEECSCCCSS-------CEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc--------------ccCCCCCCcc-------ccc
Confidence            566777 888888877543           5788888766432110              0000000000       012


Q ss_pred             eeCCCccEEEEEeC-CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE--cC-----CeEEEEEcCCC
Q 022019          133 ASDPTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YN-----KSVRVFDVHRP  204 (304)
Q Consensus       133 ~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d-----~~i~v~d~~~~  204 (304)
                      ++..++++++.|+. +..+.+||..+.+....-.....    ..-.++...+++++++.|  .+     ..+.+||..+.
T Consensus       249 ~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~----R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          249 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA----RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC----CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcc----ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            33568889999984 55899999987764432221111    122356666788888854  33     56899998753


Q ss_pred             Cccceeee-----eeecc-------c-------ccc---------------------------------------cccee
Q 022019          205 GRDFEKYS-----TLKGN-------K-------EGQ---------------------------------------AGIMS  226 (304)
Q Consensus       205 ~~~~~~~~-----~~~~~-------~-------~~~---------------------------------------~~~v~  226 (304)
                      .  ...+.     .+...       .       .+.                                       ...-.
T Consensus       325 ~--W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~  402 (656)
T 1k3i_A          325 T--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN  402 (656)
T ss_dssp             E--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred             c--ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence            1  11110     00000       0       000                                       00112


Q ss_pred             EEEeecCCCcEEEEEecCC-----------eEEEEecCCceEeEEe--ccccC-CeEEEEECCCCcEEEEeeccC-----
Q 022019          227 AIAFSPTHTGMLAIGSYSQ-----------TSAIYREDNMELLYVL--HGQEG-GVTHVQFSRDGNYLYTGGRKD-----  287 (304)
Q Consensus       227 ~~~~~p~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~--~~~~~-~v~~~~~~~~~~~l~~~~~~d-----  287 (304)
                      ++.|...++++++.|+.++           .|.+||..+..-....  ..+.. .-.++...|+|+.++.|| .+     
T Consensus       403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG-~~~~~~~  481 (656)
T 1k3i_A          403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG-QRRGIPF  481 (656)
T ss_dssp             EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECC-BSBCCTT
T ss_pred             eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECC-cccCcCc
Confidence            3344444677888887543           6888888765533322  11222 234556778999999998 44     


Q ss_pred             ------CeEEEEecccce
Q 022019          288 ------PYILCWDLRKAV  299 (304)
Q Consensus       288 ------~~i~vwd~~~~~  299 (304)
                            ..+.+||..+.+
T Consensus       482 ~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          482 EDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             CCCSBCCCCEEEEGGGTE
T ss_pred             CCCCcccceEEEcCCCCc
Confidence                  468999987765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.32  E-value=3.8e-05  Score=63.60  Aligned_cols=154  Identities=13%  Similarity=0.097  Sum_probs=94.4

Q ss_pred             cCccceeCCC---ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCC-----eEEEE
Q 022019          128 FPHMSASDPT---SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK-----SVRVF  199 (304)
Q Consensus       128 ~~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~-----~i~v~  199 (304)
                      .|..++++|+   +.+++ +...+.|+.+|+.++.........      .....++++++|+++++...+     .+..+
T Consensus       140 ~P~gvavd~~s~~g~Lyv-~D~~~~I~~id~~~g~v~~~~~~~------~~P~giavd~dG~lyVad~~~~~~~~gv~~~  212 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYW-VGQRDAFRHVDFVNQYVDIKTTNI------GQCADVNFTLNGDMVVVDDQSSDTNTGIYLF  212 (433)
T ss_dssp             CCCEEEECTTTTTCEEEE-ECBTSCEEEEETTTTEEEEECCCC------SCEEEEEECTTCCEEEEECCSCTTSEEEEEE
T ss_pred             CCceEEEccccCCCEEEE-EeCCCCEEEEECCCCEEEEeecCC------CCccEEEECCCCCEEEEcCCCCcccceEEEE
Confidence            4666777874   55444 443388999999877765443311      157899999999944444321     23333


Q ss_pred             EcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEe-c-cccCCeEEEEECCCC
Q 022019          200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-H-GQEGGVTHVQFSRDG  277 (304)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~-~~~~~v~~~~~~~~~  277 (304)
                      +....   +.....+.     .......++++|.++.++++-..++.|+.+|..++.....+ . +....-..++|+|+|
T Consensus       213 ~~~~~---~~~~~~~~-----~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG  284 (433)
T 4hw6_A          213 TRASG---FTERLSLC-----NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTG  284 (433)
T ss_dssp             CGGGT---TCCEEEEE-----ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTS
T ss_pred             ECCCC---eecccccc-----ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCC
Confidence            33211   11001110     12235678899966667666667889999998866552222 2 112234579999999


Q ss_pred             cEEEEeeccCCeEEEEecc
Q 022019          278 NYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       278 ~~l~~~~~~d~~i~vwd~~  296 (304)
                      ++|+.+....+.|+.+++.
T Consensus       285 ~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          285 DWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             SEEEEEETTTTEEEEEEBC
T ss_pred             CEEEEEeCCCCEEEEEeCC
Confidence            9777666467899998865

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.31  E-value=0.00011  Score=61.25  Aligned_cols=159  Identities=14%  Similarity=0.149  Sum_probs=98.0

Q ss_pred             CccceeCCC-c-cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEE-------CCCCcEEEEE-cCC----
Q 022019          129 PHMSASDPT-S-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF-------NPTGTKIFAG-YNK----  194 (304)
Q Consensus       129 ~~~~~~~~~-~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~-------~~~~~~l~~~-~d~----  194 (304)
                      |..++++|. . +++++-...+.|++.|+.++..........  ........++|       ++++..|+++ ..+    
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~--~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT--IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT--SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc--cccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            556677873 4 444444445679999998877665444321  12225789999       9999866644 222    


Q ss_pred             ---eEEEEEcCCCCcccee---eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC-------CceE----
Q 022019          195 ---SVRVFDVHRPGRDFEK---YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-------NMEL----  257 (304)
Q Consensus       195 ---~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-------~~~~----  257 (304)
                         .|.+++....+ .+..   ...+. .    ......++++|+++.++++-..++.|..+|+.       ++..    
T Consensus       219 ~~~~V~~i~r~~~G-~~~~~~~~~~v~-~----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          219 ESPSVYIIKRNADG-TFDDRSDIQLIA-A----YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             GEEEEEEEECCTTS-CCSTTSCEEEEE-E----ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             cCceEEEEecCCCC-ceeecccceeec-c----CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence               26677633311 1110   01111 1    11245788999777778888888999999987       4432    


Q ss_pred             ----------eEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          258 ----------LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       258 ----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                                +... +.....+.++|+|+|++|+.+.....+|+.++..
T Consensus       293 ~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          293 VKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             GGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence                      2222 2234568999999999766665367889886654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.31  E-value=0.0015  Score=58.67  Aligned_cols=211  Identities=8%  Similarity=0.105  Sum_probs=123.9

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      ...|.++...++|.+. .|+.++-|..|+..++....-.....    ...     .......|.++..       +++++
T Consensus       356 ~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~----~~~-----~~l~~~~v~~i~~-------d~~g~  418 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQED----ESA-----RGIGSNNIKAVYV-------DEKKS  418 (795)
T ss_dssp             CSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC---------------CCSCSCEEEEEE-------ETTTT
T ss_pred             CCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCC----Ccc-----cCCCCccEEEEEE-------cCCCC
Confidence            4569999998888644 46777779999887543311100000    000     0001245666654       45677


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeecccc
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  219 (304)
                      .|..|+.++-|..+|..+++.......... .....|.++..+++|.+.+++. +.+.+||..+.  .+..+........
T Consensus       419 ~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~-l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~--~~~~~~~~~~~~~  494 (795)
T 4a2l_A          419 LVYIGTHAGGLSILHRNSGQVENFNQRNSQ-LVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR--SFTTIEKEKDGTP  494 (795)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEECTTTSC-CSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT--EEEECCBCTTCCB
T ss_pred             EEEEEeCcCceeEEeCCCCcEEEeecCCCC-cCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC--eEEEccccccccc
Confidence            466677766699999887765432211111 1223789999999988777665 56889997652  1111110000001


Q ss_pred             ccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-------cccCCeEEEEECCCCcEEEEeeccCCeEEE
Q 022019          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-------GQEGGVTHVQFSRDGNYLYTGGRKDPYILC  292 (304)
Q Consensus       220 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~~d~~i~v  292 (304)
                      -....|.++...+ ++.+ ..|+. +-+..||..+++.  .+.       .....|.++...++|...+++.  . -|..
T Consensus       495 ~~~~~i~~i~~d~-~g~l-Wigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--~-Gl~~  566 (795)
T 4a2l_A          495 VVSKQITTLFRDS-HKRL-WIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR--E-GFYC  566 (795)
T ss_dssp             CCCCCEEEEEECT-TCCE-EEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES--S-CEEE
T ss_pred             cCCceEEEEEECC-CCCE-EEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC--C-Ccee
Confidence            1234588888888 5544 44555 5688899876654  222       1235799999999998655443  3 4778


Q ss_pred             Eecccce
Q 022019          293 WDLRKAV  299 (304)
Q Consensus       293 wd~~~~~  299 (304)
                      ||..+++
T Consensus       567 ~d~~~~~  573 (795)
T 4a2l_A          567 FNEKDKQ  573 (795)
T ss_dssp             EETTTTE
T ss_pred             ECCCCCc
Confidence            8876654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.31  E-value=0.00066  Score=60.41  Aligned_cols=149  Identities=14%  Similarity=0.026  Sum_probs=93.0

Q ss_pred             CccEEEEEeCCCCEEEEEcCCC----eeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCcccee
Q 022019          137 TSCVFASTTRDHPIHLWDATTG----LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~  210 (304)
                      ++.++++-...+.|+.+++...    .....+...     ......|++++.+..|+ +- ..+.|.+.++....  .  
T Consensus       435 ~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~-----l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~--~--  505 (791)
T 3m0c_C          435 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-----IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--R--  505 (791)
T ss_dssp             TTEEEEEETTTTEEEEEEC--------CEEEECSS-----CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--E--
T ss_pred             CCeeEEeeccceeEEEEeccCCCCCcceeEEEecC-----CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe--E--
Confidence            4455555556678888888643    112222211     11556899998887676 44 77899999987421  1  


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecC-CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCe
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY  289 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~  289 (304)
                       ..+.   .........|+++|..+.++++-..+ +.|...++........+...-.....|++++.+..|+.+....+.
T Consensus       506 -~~l~---~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~  581 (791)
T 3m0c_C          506 -KTLF---RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  581 (791)
T ss_dssp             -EEEE---ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             -EEEE---eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence             1111   11223478999999656666655443 789999986544433344333567899999888888877646778


Q ss_pred             EEEEecccc
Q 022019          290 ILCWDLRKA  298 (304)
Q Consensus       290 i~vwd~~~~  298 (304)
                      |...++...
T Consensus       582 I~~~d~dG~  590 (791)
T 3m0c_C          582 ISSIDVNGG  590 (791)
T ss_dssp             EEEEETTSC
T ss_pred             EEEEecCCC
Confidence            998888543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.29  E-value=7.8e-05  Score=65.39  Aligned_cols=211  Identities=14%  Similarity=0.117  Sum_probs=119.1

Q ss_pred             CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEE
Q 022019           72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH  151 (304)
Q Consensus        72 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~  151 (304)
                      +..++.++.++.|..+|..+++.................       ....+      ....++  .+..+++++.|+.|.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~-------~~~~~------~~~~~~--~~~~v~v~~~dg~l~  130 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTS-------CCDAV------NRGVAL--WGDKVYVGTLDGRLI  130 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGC-------TTCSC------CCCCEE--EBTEEEEECTTSEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccc-------cccCC------ccceEE--ECCEEEEEcCCCEEE
Confidence            456667777889999999888765443321100000000       00000      000011  344677888899999


Q ss_pred             EEEcCCCeeeEEeecccccccccceE-EEEECCCCcEEEEEc------CCeEEEEEcCCCCccceeeeeeecccc-----
Q 022019          152 LWDATTGLLRCTYRAYDAVDEITAAF-SVAFNPTGTKIFAGY------NKSVRVFDVHRPGRDFEKYSTLKGNKE-----  219 (304)
Q Consensus       152 i~d~~~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~~~~------d~~i~v~d~~~~~~~~~~~~~~~~~~~-----  219 (304)
                      .+|..+|+.+..+....... ...+. ...+ .++..++...      ++.|+.+|.+++...............     
T Consensus       131 alD~~tG~~~W~~~~~~~~~-~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~  208 (668)
T 1kv9_A          131 ALDAKTGKAIWSQQTTDPAK-PYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHP  208 (668)
T ss_dssp             EEETTTCCEEEEEECSCTTS-SCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSH
T ss_pred             EEECCCCCEeeeeccCCCCC-cceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccc
Confidence            99999999887776532100 00111 0011 1344444222      589999999876433221110000000     


Q ss_pred             ------------------ccccceeEEEeecCCCcEEEEEecCC-------------------eEEEEecCCceEeEEec
Q 022019          220 ------------------GQAGIMSAIAFSPTHTGMLAIGSYSQ-------------------TSAIYREDNMELLYVLH  262 (304)
Q Consensus       220 ------------------~~~~~v~~~~~~p~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~  262 (304)
                                        +.......++++| ...+++.++.++                   .|..+|.++++.+-.+.
T Consensus       209 ~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~  287 (668)
T 1kv9_A          209 ELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ  287 (668)
T ss_dssp             HHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred             ccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee
Confidence                              0111123578888 555777777766                   39999999999887776


Q ss_pred             c--cc-------CCeEEEEECCCCc---EEEEeeccCCeEEEEecccceee
Q 022019          263 G--QE-------GGVTHVQFSRDGN---YLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       263 ~--~~-------~~v~~~~~~~~~~---~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      .  |.       .+.....+..+|+   .|+.++ .+|.++++|..+|+.+
T Consensus       288 ~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          288 VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred             cCCCccccccCCCCcEEEEeccCCcEEEEEEEEC-CCCEEEEEECCCCCEe
Confidence            3  22       2222233333665   688888 9999999999999876

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.28  E-value=1.1e-05  Score=71.11  Aligned_cols=206  Identities=8%  Similarity=-0.012  Sum_probs=114.2

Q ss_pred             CceeEEEEcCCCCeEEEe-cCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC-Cc
Q 022019           61 NFLKGIKWSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP-TS  138 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~  138 (304)
                      ..+..|+|++.+..|+.+ ...+.|..+++..........              ....      .-...|..+++++ .+
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~--------------~~i~------~~~~~P~glavD~~~g  465 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--------------TVIS------RDIQAPDGLAVDWIHS  465 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCC--------------CBCC------SCC--CCCEECCCSSS
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceE--------------EEEe------CCCCCcceEEEEeeCC
Confidence            346788999866655544 456788888876411000000              0000      0001244445564 34


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE--c-CCeEEEEEcCCCCccceeeeeee
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--Y-NKSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~-d~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      +++++-...+.|.++++........+....     .....|+++|.+.+|+.+  . .+.|.++++.....  .   .+.
T Consensus       466 ~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~-----~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~---~l~  535 (699)
T 1n7d_A          466 NIYWTDSVLGTVSVADTKGVKRKTLFREQG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--Y---SLV  535 (699)
T ss_dssp             BCEECCTTTSCEEEEBSSSCCEEEECCCSS-----CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--C---EES
T ss_pred             cEEEEeccCCeEEEEecCCCceEEEEeCCC-----CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--e---EEE
Confidence            555555567889999987554332222111     145688999976666633  2 37788887754211  1   111


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec--cccCCeEEEEECCCCcEEEEeeccCCeEEEE
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYTGGRKDPYILCW  293 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vw  293 (304)
                         .........|+|+|+++.++++-+..+.|..+++........+.  ..-.....|++..+  .|+.+....+.|..+
T Consensus       536 ---~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~  610 (699)
T 1n7d_A          536 ---TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSA  610 (699)
T ss_dssp             ---CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEE
T ss_pred             ---eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEE
Confidence               11123467899999777787877778899999986533222222  11122345555443  444443367899999


Q ss_pred             ecccceee
Q 022019          294 DLRKAVQV  301 (304)
Q Consensus       294 d~~~~~~~  301 (304)
                      +..+|+.+
T Consensus       611 d~~~G~~~  618 (699)
T 1n7d_A          611 NRLTGSDV  618 (699)
T ss_dssp             ETTTEEEE
T ss_pred             EccCCCce
Confidence            98776543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.24  E-value=0.001  Score=52.66  Aligned_cols=196  Identities=12%  Similarity=0.181  Sum_probs=112.4

Q ss_pred             CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc---EEEEEe-C
Q 022019           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC---VFASTT-R  146 (304)
Q Consensus        71 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~l~~~~-~  146 (304)
                      ..++++.....+-+.+||+ +++....+.                   ...+..+...|..   .-.|+   ++++.. .
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~-------------------~g~~nnVD~r~~~---~l~g~~~dla~as~R~   95 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN-------------------TGKLNNVDIRYDF---PLNGKKVDIAAASNRS   95 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEEC-------------------CSCEEEEEEEEEE---EETTEEEEEEEEEECS
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEcc-------------------CCCcccEEEeccc---ccCCceEeEEEEeCCC
Confidence            3456666667788999999 444322211                   1233333333211   11222   223333 3


Q ss_pred             --CCCEEEEEcC--CCeeeEEeecc--cccccccceEEEEE--CCC-Cc-EEEEE-cCCeEEEEEcCCCC---ccceeee
Q 022019          147 --DHPIHLWDAT--TGLLRCTYRAY--DAVDEITAAFSVAF--NPT-GT-KIFAG-YNKSVRVFDVHRPG---RDFEKYS  212 (304)
Q Consensus       147 --dg~i~i~d~~--~~~~~~~~~~~--~~~~~~~~v~~i~~--~~~-~~-~l~~~-~d~~i~v~d~~~~~---~~~~~~~  212 (304)
                        +++|.+|++.  ++. +..+...  ........++.+++  +|. +. ++++. .+|.+..|++....   ...+...
T Consensus        96 ~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR  174 (355)
T 3amr_A           96 EGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVR  174 (355)
T ss_dssp             TTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEE
Confidence              5789999774  333 3333110  00001125677777  774 44 45554 88999999985321   1222222


Q ss_pred             eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecC-----CceEeEEec-cc-cCCeEEEEE--CCCCc-EEEE
Q 022019          213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-----NMELLYVLH-GQ-EGGVTHVQF--SRDGN-YLYT  282 (304)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~-~~-~~~v~~~~~--~~~~~-~l~~  282 (304)
                      .+.     ..+.+..|...+ ....|+++-++.-|..|+.+     +++.+..+. ++ ...+..|++  .++++ ||++
T Consensus       175 ~f~-----lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLiv  248 (355)
T 3amr_A          175 AFK-----MNSQTEGMAADD-EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMA  248 (355)
T ss_dssp             EEE-----CSSCEEEEEEET-TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEE
T ss_pred             Eec-----CCCCcceEEEcC-CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEE
Confidence            222     124578899998 56688889888778888855     345665553 22 236788887  56666 7777


Q ss_pred             eeccCCeEEEEecc
Q 022019          283 GGRKDPYILCWDLR  296 (304)
Q Consensus       283 ~~~~d~~i~vwd~~  296 (304)
                      ++..++++.+||..
T Consensus       249 SsQG~~s~~Vydr~  262 (355)
T 3amr_A          249 SSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEGGGTEEEEEESS
T ss_pred             EcCCCCEEEEEECC
Confidence            77678899999997

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.19  E-value=0.00013  Score=64.98  Aligned_cols=149  Identities=12%  Similarity=0.073  Sum_probs=84.5

Q ss_pred             eC-CCccEEEEEeC-CC----CEEEEEcCCC-eeeEE-eecccccccccceEEEEECCCCcEEE-EEcC-----CeEEEE
Q 022019          134 SD-PTSCVFASTTR-DH----PIHLWDATTG-LLRCT-YRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-----KSVRVF  199 (304)
Q Consensus       134 ~~-~~~~~l~~~~~-dg----~i~i~d~~~~-~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d-----~~i~v~  199 (304)
                      +| |||++|+.+.. +|    .|+++|+.++ +.+.. +..        ...++.|+|||+.|+ +..+     ..|+++
T Consensus       181 ~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~--------~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          181 PAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG--------TNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             ECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE--------ECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             ecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC--------ceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            38 89998876543 33    4999999988 63211 110        234789999998887 4443     257778


Q ss_pred             EcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec---CCeEEEEecCCc--eE-eEEe-ccccCCeEEEE
Q 022019          200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQTSAIYREDNM--EL-LYVL-HGQEGGVTHVQ  272 (304)
Q Consensus       200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~i~d~~~~--~~-~~~~-~~~~~~v~~~~  272 (304)
                      ++.++......+.  .   .........+.|+| ++++|+..+.   ...|+++|+.++  .. +..+ ........++.
T Consensus       253 ~lgt~~~~~~lv~--~---~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~  326 (751)
T 2xe4_A          253 VMGKLQSEDVCLY--E---EHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ  326 (751)
T ss_dssp             ETTSCGGGCEEEE--E---CCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred             ECCCCchhcEEEE--e---cCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence            8765321111111  1   11123356789999 4555554442   345888898765  22 1333 33445566676


Q ss_pred             ECCCCcEEEEeeccC----CeEEEEeccc
Q 022019          273 FSRDGNYLYTGGRKD----PYILCWDLRK  297 (304)
Q Consensus       273 ~~~~~~~l~~~~~~d----~~i~vwd~~~  297 (304)
                      |+..+.+++.+. .+    ..|..+++.+
T Consensus       327 ~~~g~~l~~~t~-~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          327 MHGTSHLVILTN-EGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EETTTEEEEEEC-TTTCTTCEEEEEETTS
T ss_pred             eeeCCEEEEEeC-CCCCCCcEEEEEcCCC
Confidence            654444444443 43    3677777764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.18  E-value=0.0015  Score=51.97  Aligned_cols=147  Identities=9%  Similarity=0.028  Sum_probs=80.4

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      .+++.+++++. +|.++.-+-..+..-..+...    ....+..+.+.+++..++++.+|.+++.+... +...   ..+
T Consensus       171 ~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~----~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~-G~tW---~~~  241 (327)
T 2xbg_A          171 SPSGEYVAVSS-RGSFYSTWEPGQTAWEPHNRT----TSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENW---GEL  241 (327)
T ss_dssp             CTTSCEEEEET-TSSEEEEECTTCSSCEEEECC----SSSCEEEEEECTTSCEEEEETTTEEEEEETTE-EEEE---CCC
T ss_pred             cCCCcEEEEEC-CCcEEEEeCCCCCceeECCCC----CCCccceeEECCCCCEEEEeCCceEEEecCCC-CCee---Eec
Confidence            56777776654 454443321112222222111    12267889999999888888888887764221 1111   111


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec---cccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH---GQEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                      ..........+.++.+.| ++.+++++ .+|.| ++..+.++.-..+.   .....+.++.|.+++. +++++ .+|.|.
T Consensus       242 ~~~~~~~~~~~~~v~~~~-~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G-~~G~i~  316 (327)
T 2xbg_A          242 LSPLRRNSVGFLDLAYRT-PNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILG-QKGILL  316 (327)
T ss_dssp             BCTTSSCCSCEEEEEESS-SSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEEC-STTEEE
T ss_pred             cCCcccCCcceEEEEecC-CCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEc-CCceEE
Confidence            110001223478888988 56566655 46766 34444454433333   2345678898876655 55566 689877


Q ss_pred             EEec
Q 022019          292 CWDL  295 (304)
Q Consensus       292 vwd~  295 (304)
                      -++-
T Consensus       317 ~~~~  320 (327)
T 2xbg_A          317 RYVT  320 (327)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            6653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.17  E-value=0.00094  Score=57.56  Aligned_cols=56  Identities=13%  Similarity=0.090  Sum_probs=39.1

Q ss_pred             CCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          244 SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       244 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +|.|..||+.+++.+-+... ..++..-.....+..++.++ .|+.|+.||.++|+.+
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt-~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGT-LDGYLKARDSDTGDLL  507 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             cCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEEC-CCCeEEEEECCCCCEE
Confidence            47888999999887766642 11221111222467788888 8999999999999876

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.15  E-value=0.0015  Score=56.15  Aligned_cols=166  Identities=13%  Similarity=0.114  Sum_probs=89.5

Q ss_pred             CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeC-----
Q 022019           72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-----  146 (304)
Q Consensus        72 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~-----  146 (304)
                      +..++.++.|+.|..+|..+++............             ...+   .-.|.   +. ++ .+++++.     
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~-------------~~~~---~~~P~---v~-~g-~v~vg~~~~~~~  173 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKV-------------GSTL---TQAPF---VA-KD-TVLMGCSGAELG  173 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGG-------------TCBC---CSCCE---EE-TT-EEEEECBCGGGT
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCc-------------ccee---ccCCE---EE-CC-EEEEEecCCccC
Confidence            4467777788999999988876643322111000             0000   00000   00 33 3444443     


Q ss_pred             -CCCEEEEEcCCCeeeEEeecccccc---------------------------------cccceEEEEECCCCcEEEEE-
Q 022019          147 -DHPIHLWDATTGLLRCTYRAYDAVD---------------------------------EITAAFSVAFNPTGTKIFAG-  191 (304)
Q Consensus       147 -dg~i~i~d~~~~~~~~~~~~~~~~~---------------------------------~~~~v~~i~~~~~~~~l~~~-  191 (304)
                       ++.|+.+|..+|+.+..+.......                                 .......++++++...++.+ 
T Consensus       174 ~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~  253 (571)
T 2ad6_A          174 VRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGS  253 (571)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEEC
Confidence             7899999999999887765432110                                 00000235677766666644 


Q ss_pred             cC----------------CeEEEEEcCCCCccceeeeeeecc----ccccccceeEEEeecCCC---cEEEEEecCCeEE
Q 022019          192 YN----------------KSVRVFDVHRPGRDFEKYSTLKGN----KEGQAGIMSAIAFSPTHT---GMLAIGSYSQTSA  248 (304)
Q Consensus       192 ~d----------------~~i~v~d~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~i~  248 (304)
                      .+                +.|..+|.+++.....  ......    ......++ -+...+ ++   .+++.++.+|.++
T Consensus       254 g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~--~~~~~~d~~d~~~~~~p~-l~~~~~-~G~~~~~v~~~~~~G~l~  329 (571)
T 2ad6_A          254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWG--YQKTPHDEWDFAGVNQMV-LTDQPV-NGKMTPLLSHIDRNGILY  329 (571)
T ss_dssp             CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEE--EESSTTCSSCCCCCCCCE-EEEEEE-TTEEEEEEEEECTTSEEE
T ss_pred             CCCccccCCccCCCceeEEEEEEEecCCCcEEEE--ecCCCCcccccccCCCCE-EEeccc-CCcEEEEEEEeCCCcEEE
Confidence            21                3589999887532221  111000    00111222 122234 34   4677889999999


Q ss_pred             EEecCCceEeEEec
Q 022019          249 IYREDNMELLYVLH  262 (304)
Q Consensus       249 i~d~~~~~~~~~~~  262 (304)
                      ++|..+++.+..+.
T Consensus       330 ~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          330 TLNRENGNLIVAEK  343 (571)
T ss_dssp             EEETTTCCEEEEEE
T ss_pred             EEECCCCCEEeeec
Confidence            99999998876654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=98.12  E-value=0.00072  Score=54.72  Aligned_cols=153  Identities=16%  Similarity=0.254  Sum_probs=95.6

Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCcccee------
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEK------  210 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~------  210 (304)
                      +|..++.+- ++.||..++..+..-+.+...... ....+..+..+|+|++||...+..|.|..+..+......      
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i-~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHL-VLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTC-CCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCccc-ccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence            454555543 477888888754433444433100 011567899999999999888889999998732211110      


Q ss_pred             ee--eee--ccccccccceeEEEeecCC--CcEEEEEecCCeEEEEecCCc--eEeEEec---------cccCCeEEEEE
Q 022019          211 YS--TLK--GNKEGQAGIMSAIAFSPTH--TGMLAIGSYSQTSAIYREDNM--ELLYVLH---------GQEGGVTHVQF  273 (304)
Q Consensus       211 ~~--~~~--~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~---------~~~~~v~~~~~  273 (304)
                      +.  ...  ........+|..+.|||-+  +..|++-..|+.|++||+...  +|. .++         .....|.+++|
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence            01  111  0111135679999999943  348999999999999999752  233 332         22257899999


Q ss_pred             CCCCcEEEE--eeccCCeEEEE
Q 022019          274 SRDGNYLYT--GGRKDPYILCW  293 (304)
Q Consensus       274 ~~~~~~l~~--~~~~d~~i~vw  293 (304)
                      .+++-.|+.  .. .+|-|+-.
T Consensus       188 g~~~lTLYvl~~t-~~GDIYAl  208 (452)
T 3pbp_A          188 SKDGLTLYCLNTT-EGGDIFAF  208 (452)
T ss_dssp             CTTSSCEEEEECT-TSCEEEEE
T ss_pred             cCCCcEEEEEecC-CCCCEEEE
Confidence            998876666  54 56766654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.11  E-value=0.0026  Score=56.97  Aligned_cols=205  Identities=11%  Similarity=0.074  Sum_probs=118.8

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      ....|.++...++|.+.+ |+.++-+..++..++........               ......|.++..       ++++
T Consensus       405 ~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~---------------~~~~~~v~~i~~-------d~~g  461 (781)
T 3v9f_A          405 LSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELE---------------KNELLDVRVFYE-------DKNK  461 (781)
T ss_dssp             CCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCST---------------TTCCCCEEEEEE-------CTTS
T ss_pred             CCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccC---------------CCCCCeEEEEEE-------CCCC
Confidence            346788998888876554 66666788888765432111000               001234555544       5566


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccc
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                      .+.+ |+.. -|..+|..+++................|.++..+++|.+.+++.++.+..||....  .+   .......
T Consensus       462 ~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~--~~---~~~~~~~  534 (781)
T 3v9f_A          462 KIWI-GTHA-GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQ--LV---RKFNQYE  534 (781)
T ss_dssp             EEEE-EETT-EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCC--EE---EEECTTT
T ss_pred             CEEE-EECC-ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCC--eE---EEccCCC
Confidence            5444 4454 48899988765543322211001123788999999998887776556888887642  11   1121111


Q ss_pred             cccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccc----cCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ----EGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       219 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      .-....|.++...+ ++. |..|+.+|.|..||..+++. ..+...    ...|.++...++|.+.++ + .+| |..++
T Consensus       535 ~l~~~~i~~i~~d~-~g~-lWi~T~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t-~~G-l~~~~  608 (781)
T 3v9f_A          535 GFCSNTINQIYRSS-KGQ-MWLATGEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWAS-T-NTG-ISCYI  608 (781)
T ss_dssp             TCSCSCEEEEEECT-TSC-EEEEETTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEE-C-SSC-EEEEE
T ss_pred             CCCCCeeEEEEECC-CCC-EEEEECCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEE-c-CCc-eEEEE
Confidence            11234588888888 554 44455566658899876542 233211    235788999988875554 4 455 66677


Q ss_pred             cccce
Q 022019          295 LRKAV  299 (304)
Q Consensus       295 ~~~~~  299 (304)
                      ..+++
T Consensus       609 ~~~~~  613 (781)
T 3v9f_A          609 TSKKC  613 (781)
T ss_dssp             TTTTE
T ss_pred             CCCCc
Confidence            66543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.10  E-value=0.0012  Score=52.78  Aligned_cols=195  Identities=11%  Similarity=0.111  Sum_probs=103.9

Q ss_pred             CceeEEEEcCCCCeEEEec------------CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeec
Q 022019           61 NFLKGIKWSPDGSSFLTSS------------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF  128 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  128 (304)
                      ...-+|...|+|..+++++            .+|.|.++|+++......               .+..... ....-.|+
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~---------------~l~~~g~-~~~~~~f~  113 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS---------------ELEIIGN-TLDISSFN  113 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEE---------------ECEEECS-SCCGGGCC
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE---------------EEEccCC-CCCcCcee
Confidence            3456777888886666552            689999999874321100               0110000 00001234


Q ss_pred             CccceeCC--Cc--cEEEEEeC--CCCEEEEEcCCCe-eeEEeecccccccccceEEEEECCCCcEEEEEc---------
Q 022019          129 PHMSASDP--TS--CVFASTTR--DHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY---------  192 (304)
Q Consensus       129 ~~~~~~~~--~~--~~l~~~~~--dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~---------  192 (304)
                      |+.+.+.+  ++  .++++-..  +.+|-+|++..+. ....+..... ......+.+.+.++|.+.++..         
T Consensus       114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g-~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~  192 (355)
T 3sre_A          114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-KLLPSVNDIVAVGPEHFYATNDHYFIDPYLK  192 (355)
T ss_dssp             EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC-TTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred             eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc-CCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence            44444322  33  24444333  4567787776432 1111211111 2233678999999998777542         


Q ss_pred             ---------CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC-ce--EeEE
Q 022019          193 ---------NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-ME--LLYV  260 (304)
Q Consensus       193 ---------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~  260 (304)
                               .|.|+-+|..    ..   ..+.    ..-...+.++|+|++..++++-+..+.|+.|++.. ++  ....
T Consensus       193 ~~e~~~~~~~g~vyr~d~~----~~---~~~~----~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~  261 (355)
T 3sre_A          193 SWEMHLGLAWSFVTYYSPN----DV---RVVA----EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV  261 (355)
T ss_dssp             HHHHHTTCCCEEEEEECTT----CC---EEEE----EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred             cchhhccCCccEEEEEECC----eE---EEee----cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEE
Confidence                     1344444431    11   1111    11233688999996556666666789999999863 32  2223


Q ss_pred             eccccCCeEEEEECC-CCcEEEEee
Q 022019          261 LHGQEGGVTHVQFSR-DGNYLYTGG  284 (304)
Q Consensus       261 ~~~~~~~v~~~~~~~-~~~~l~~~~  284 (304)
                      +. ..+..-.+++.+ +|.+.+++.
T Consensus       262 ~~-~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          262 LS-FDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EE-CSSEEEEEEECTTTCCEEEEEE
T ss_pred             Ee-CCCCCceEEEeCCCCcEEEEec
Confidence            32 245568899999 588766554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.09  E-value=0.002  Score=50.51  Aligned_cols=180  Identities=11%  Similarity=0.122  Sum_probs=100.7

Q ss_pred             cCCCCceeEEEEcCCCC-eEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeC
Q 022019           57 SIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD  135 (304)
Q Consensus        57 ~~h~~~V~~i~~s~~~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  135 (304)
                      ....-.--+++|.+... ++++.-..++|..|+...+..... ..........         .......+.|..+    .
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~---------~~~~~sGl~~~~~----D   74 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGD---------GEQQMSGLSLLTH----D   74 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSC---------CSEEEEEEEESSS----S
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCC---------CcceeeEEEEecc----C
Confidence            34444556789988444 444444799999999874432111 0000000000         0012234444100    3


Q ss_pred             CCccEEEEEe-------------CCCCEEEEEcC---CCeeeEEeecccccc--------cccceEEEEECCCCcEEEEE
Q 022019          136 PTSCVFASTT-------------RDHPIHLWDAT---TGLLRCTYRAYDAVD--------EITAAFSVAFNPTGTKIFAG  191 (304)
Q Consensus       136 ~~~~~l~~~~-------------~dg~i~i~d~~---~~~~~~~~~~~~~~~--------~~~~v~~i~~~~~~~~l~~~  191 (304)
                      |+++++++..             .+..|..||+.   +++............        ....+..++.+++|+..+++
T Consensus        75 ~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~  154 (334)
T 2p9w_A           75 NSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF  154 (334)
T ss_dssp             SCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE
T ss_pred             CCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeC
Confidence            5677776543             25779999998   777665554321110        11257899999999988855


Q ss_pred             -cC-CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC
Q 022019          192 -YN-KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN  254 (304)
Q Consensus       192 -~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~  254 (304)
                       .. +.|..++...  .....+. ............+.|+++| ++..|++....|.+..+|+..
T Consensus       155 s~~~~~I~rV~pdG--~~~~~~~-~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          155 ALGMPAIARVSADG--KTVSTFA-WESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EESSCEEEEECTTS--CCEEEEE-ECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred             CCCCCeEEEEeCCC--CEEeeee-ecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence             55 6766666543  2222111 1111112223477999999 565666665599999999874

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.09  E-value=0.0032  Score=52.58  Aligned_cols=166  Identities=10%  Similarity=0.090  Sum_probs=95.7

Q ss_pred             cCccceeCC-CccEEEEEeCCCCEEEEEcC-------CCee-----------eEE-eecccccccccceEEEEECCCCcE
Q 022019          128 FPHMSASDP-TSCVFASTTRDHPIHLWDAT-------TGLL-----------RCT-YRAYDAVDEITAAFSVAFNPTGTK  187 (304)
Q Consensus       128 ~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~-------~~~~-----------~~~-~~~~~~~~~~~~v~~i~~~~~~~~  187 (304)
                      +|..++++| ++.++++-..++.|+.+|+.       ++..           ... +....    ....+.|+|+|+|+.
T Consensus       248 ~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~----~~~p~~ia~~p~G~~  323 (496)
T 3kya_A          248 QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIAD----PSWEFQIFIHPTGKY  323 (496)
T ss_dssp             CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSS----SSCCEEEEECTTSSE
T ss_pred             CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCC----CCCceEEEEcCCCCE
Confidence            455666788 45666666678889999987       5543           111 22111    124679999999997


Q ss_pred             EEEE--cCCeEEEEEcCCCCccceeeeeeecc--ccc---------ccccee-EEEeec------CCCcEEEEEecCCeE
Q 022019          188 IFAG--YNKSVRVFDVHRPGRDFEKYSTLKGN--KEG---------QAGIMS-AIAFSP------THTGMLAIGSYSQTS  247 (304)
Q Consensus       188 l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~--~~~---------~~~~v~-~~~~~p------~~~~~l~~~~~dg~i  247 (304)
                      |+.+  ..+.|+.++.......+.....+...  ..+         .-.... .+...+      ..+.++++=..+..|
T Consensus       324 lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rI  403 (496)
T 3kya_A          324 AYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCV  403 (496)
T ss_dssp             EEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEE
T ss_pred             EEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEE
Confidence            6643  77889987764321111000111110  001         111233 444541      256677777778899


Q ss_pred             EEEecCCceEeEEeccc------------------------cCCeEEEEECCC-CcEEEEeeccCCeEEEEeccccee
Q 022019          248 AIYREDNMELLYVLHGQ------------------------EGGVTHVQFSRD-GNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       248 ~i~d~~~~~~~~~~~~~------------------------~~~v~~~~~~~~-~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      +.++. ++. +.++-+.                        -.....|+++++ |.+.++=. .+.+|+.+++.....
T Consensus       404 r~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~-~N~rIrki~~~~~~~  478 (496)
T 3kya_A          404 RKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQ-VGHTIRTISMEQEEN  478 (496)
T ss_dssp             EEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEET-TTTEEEEEEECCCC-
T ss_pred             EEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeC-CCCEEEEEECCCCcc
Confidence            99994 453 3344221                        023678999997 65444444 788999999876544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.07  E-value=0.0012  Score=52.72  Aligned_cols=145  Identities=12%  Similarity=0.105  Sum_probs=84.6

Q ss_pred             CCCCEEEEEcCCCe-eeEEeecccc--cccccceEEEEECC--CCc-EEE-EE---cCCeEEEEEcCCCCccceeeeeee
Q 022019          146 RDHPIHLWDATTGL-LRCTYRAYDA--VDEITAAFSVAFNP--TGT-KIF-AG---YNKSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       146 ~dg~i~i~d~~~~~-~~~~~~~~~~--~~~~~~v~~i~~~~--~~~-~l~-~~---~d~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      .+|.|.++|+.+.. ....+.....  .........+.+.+  ++. +|+ +.   .+..|.+|++...+..........
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            68999999987421 1222332210  01122456777755  443 344 43   367899999876544433333332


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEe-----------------cCCeEEEEecCCceEeEEeccccCCeEEEEECCCCc
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGS-----------------YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN  278 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  278 (304)
                      .   ..-.....+.+.+ ++.++++..                 ..|.|.-+|..  +.. .+...-..-+.++|+||++
T Consensus       161 g---~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~-~~~~~l~~pNGia~spDg~  233 (355)
T 3sre_A          161 H---KLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVR-VVAEGFDFANGINISPDGK  233 (355)
T ss_dssp             C---TTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCE-EEEEEESSEEEEEECTTSS
T ss_pred             c---CCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEE-EeecCCcccCcceECCCCC
Confidence            2   1233478899999 666666654                 12455555553  222 2222233468999999999


Q ss_pred             EEEEeeccCCeEEEEeccc
Q 022019          279 YLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       279 ~l~~~~~~d~~i~vwd~~~  297 (304)
                      +|+.+....+.|..|++..
T Consensus       234 ~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          234 YVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEEEEEGGGTEEEEEEECT
T ss_pred             EEEEEeCCCCeEEEEEECC
Confidence            8887765788999999863

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.07  E-value=0.0011  Score=57.17  Aligned_cols=57  Identities=12%  Similarity=0.181  Sum_probs=40.5

Q ss_pred             CCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          244 SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       244 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      +|.|..||+.+++.+-+..... ++..-.....+..++.++ .||.++.||.++|+.+-
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~-~dg~l~A~D~~tG~~lW  521 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGT-GDGYFKAFDAKSGKELW  521 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEEC-TTSEEEEEETTTCCEEE
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEEC-CCCcEEEEECCCCCEEE
Confidence            5789999999998877665322 222111122466788888 99999999999998763

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.07  E-value=9.7e-05  Score=63.60  Aligned_cols=135  Identities=16%  Similarity=0.154  Sum_probs=80.4

Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccc--------ccc--------------------------------ceEE
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD--------EIT--------------------------------AAFS  178 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------~~~--------------------------------~v~~  178 (304)
                      ..++.++.+|.++++|..+|+.+..........        ...                                .-..
T Consensus       337 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  416 (582)
T 1flg_A          337 KATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNP  416 (582)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSC
T ss_pred             EEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCC
Confidence            368888999999999999998876665432000        000                                0014


Q ss_pred             EEECCCCcEEEEE-c---------------------------------CCeEEEEEcCCCCccceeeeeeeccccccccc
Q 022019          179 VAFNPTGTKIFAG-Y---------------------------------NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI  224 (304)
Q Consensus       179 i~~~~~~~~l~~~-~---------------------------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  224 (304)
                      ++++|+...+++. .                                 +|.|.-||+.++....+    .....     +
T Consensus       417 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~----~~~~~-----~  487 (582)
T 1flg_A          417 MAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWE----HKEHL-----P  487 (582)
T ss_dssp             CEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEE----EEESS-----C
T ss_pred             ceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEE----ecCCC-----C
Confidence            5777765555432 1                                 46788888877532222    11110     1


Q ss_pred             eeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCe-EEEEECCCCc-EEEEe
Q 022019          225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV-THVQFSRDGN-YLYTG  283 (304)
Q Consensus       225 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~-~l~~~  283 (304)
                      +..-.... .+.++++|+.||.++.||.++++.+.+++...+.. .-+.|..+|+ |+++.
T Consensus       488 ~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          488 LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence            11111112 23477779999999999999999998887543221 2256667886 44433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.06  E-value=0.0016  Score=56.52  Aligned_cols=203  Identities=9%  Similarity=0.033  Sum_probs=113.9

Q ss_pred             CCceeEEEEcCCCCeEE-EecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC-
Q 022019           60 NNFLKGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT-  137 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-  137 (304)
                      -+.+..|+|++.+..|+ +-...+.|..+++......                . .....+      ...|..+++++. 
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~----------------~-~v~~~~------~~~P~GlAvD~~~   95 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV----------------Q-NVVVSG------LLSPDGLACDWLG   95 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C----------------E-EEECSS------CSCEEEEEEETTT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce----------------E-EEEeCC------CCCcCeEEEEecC
Confidence            44578999998655554 4445678888887633110                0 011110      012444455664 


Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE--cCCeEEEEEcCCCCccceeeeee
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~--~d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      ++++++-...+.|.+.++.............     .....|+++|.+..|+ +.  ..+.|...++...  ....   +
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l-----~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~--~~~~---l  165 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQEL-----DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--SRFI---I  165 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSC-----SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC--SCEE---E
T ss_pred             CEEEEEeCCCCEEEEEECCCCCEEEEEeCCC-----CCCceEEEecCCCeEEEeccCCCCEEEEEECCCC--ceEE---E
Confidence            4455555667889999987543322221111     1566899999766665 44  2467777776532  1111   1


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      .   .........++++++++.++++-...+.|..+|+..........+......++++..+  .|+.+....+.|...|
T Consensus       166 ~---~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d  240 (619)
T 3s94_A          166 I---NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACN  240 (619)
T ss_dssp             E---CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEE
T ss_pred             E---eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEE
Confidence            1   1122346889999966777777777788999998765443333222222356777655  5555554778899999


Q ss_pred             ccccee
Q 022019          295 LRKAVQ  300 (304)
Q Consensus       295 ~~~~~~  300 (304)
                      ..+++.
T Consensus       241 ~~tg~~  246 (619)
T 3s94_A          241 KYTGEG  246 (619)
T ss_dssp             SSSCCC
T ss_pred             CCCCcc
Confidence            877753

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.05  E-value=0.00097  Score=52.76  Aligned_cols=152  Identities=9%  Similarity=0.118  Sum_probs=95.0

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECC----CCc---EEEEE--c--CCeEEEEEcCC
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP----TGT---KIFAG--Y--NKSVRVFDVHR  203 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~----~~~---~l~~~--~--d~~i~v~d~~~  203 (304)
                      +|...+++.....+-+.+||+ +|+.+..+.. .      .++.+..-|    .|+   +++++  .  +++|.+|++..
T Consensus        37 dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g------~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp  108 (355)
T 3amr_A           37 TPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT-G------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG  108 (355)
T ss_dssp             CGGGCEEEEEETTTEEEEEET-TSCEEEEECC-S------CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred             CCCccEEEEEcCCCCEEEEcC-CCcEEEEccC-C------CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence            445556777777788999999 7888877754 2      344444444    222   23344  4  68999998853


Q ss_pred             CCccceeeeeeeccccccccceeEEEe--ecCCC-cEEEEEecCCeEEEEecC-------CceEeEEeccccCCeEEEEE
Q 022019          204 PGRDFEKYSTLKGNKEGQAGIMSAIAF--SPTHT-GMLAIGSYSQTSAIYRED-------NMELLYVLHGQEGGVTHVQF  273 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~-~~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~v~~~~~  273 (304)
                      ....+..+.............+..+++  +|..+ .++++...+|.+..|++.       +.+.+.+|.. .+.+-.+..
T Consensus       109 ~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egcvv  187 (355)
T 3amr_A          109 KNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAA  187 (355)
T ss_dssp             TTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEE
T ss_pred             CCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEE
Confidence            222222221100000011144667777  77444 468888889999999883       3466777774 456889999


Q ss_pred             CCCCcEEEEeeccCCeEEEEecc
Q 022019          274 SRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       274 ~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      .+...+|+.+- .+.-|..++.+
T Consensus       188 Dd~~g~Lyv~e-Ed~GIw~~da~  209 (355)
T 3amr_A          188 DDEYGRLYIAE-EDEAIWKFSAE  209 (355)
T ss_dssp             ETTTTEEEEEE-TTTEEEEEECS
T ss_pred             cCCCCeEEEec-ccceEEEEeCC
Confidence            99888999998 77555555543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.01  E-value=0.0052  Score=53.38  Aligned_cols=157  Identities=13%  Similarity=0.023  Sum_probs=99.2

Q ss_pred             eEEEEeecCccceeCCC-ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEE
Q 022019          121 SVYDFCWFPHMSASDPT-SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVR  197 (304)
Q Consensus       121 ~v~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~  197 (304)
                      ....+.|       ++. +.++++-..++.|+.+++........+....     .....+++++.+..|+ +- ..+.|.
T Consensus        38 ~~~~l~~-------d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~-----~~P~GlAvD~~~~~LY~tD~~~~~I~  105 (628)
T 4a0p_A           38 EASALDF-------DVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL-----DYPEGMAVDWLGKNLYWADTGTNRIE  105 (628)
T ss_dssp             CEEEEEE-------ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-----SCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             ceEEEEE-------ECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC-----CCcceEEEEeCCCEEEEEECCCCEEE
Confidence            4455655       443 4455555667889999887554333332211     1456899998776666 44 678899


Q ss_pred             EEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEE-ecCCeEEEEecCCceEeEEeccccCCeEEEEECCC
Q 022019          198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD  276 (304)
Q Consensus       198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  276 (304)
                      +.++.....     ..+.   .........++++|..+.++++- +..+.|...++........+. .-.....++++++
T Consensus       106 v~~~dG~~~-----~~l~---~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~  176 (628)
T 4a0p_A          106 VSKLDGQHR-----QVLV---WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYA  176 (628)
T ss_dssp             EEETTSTTC-----EEEE---CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETT
T ss_pred             EEecCCCcE-----EEEE---eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccc
Confidence            999864321     1111   11223468999999666665554 235788888876543332233 3456789999998


Q ss_pred             CcEEEEeeccCCeEEEEecccc
Q 022019          277 GNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       277 ~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      +..|+.+....+.|...++...
T Consensus       177 ~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          177 KRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             TTEEEEEETTTTEEEEEETTSC
T ss_pred             cCEEEEEECCCCEEEEEcCCCC
Confidence            8888877657788999998653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.97  E-value=0.0071  Score=52.56  Aligned_cols=198  Identities=10%  Similarity=0.037  Sum_probs=118.1

Q ss_pred             CceeEEEEcCCCCe-EEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC-c
Q 022019           61 NFLKGIKWSPDGSS-FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT-S  138 (304)
Q Consensus        61 ~~V~~i~~s~~~~~-l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~  138 (304)
                      ..+..|+|++.+.. +++-..++.|..++++.....                  .....+      ...|..+++++. +
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~------------------~v~~~g------~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE------------------HVVEFG------LDYPEGMAVDWLGK   92 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------------------EEECSS------CSCCCEEEEETTTT
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE------------------EEEeCC------CCCcceEEEEeCCC
Confidence            45789999985554 455556788988887643211                  000000      013444455544 4


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE--cCCeEEEEEcCCCCccceeeeeee
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVRVFDVHRPGRDFEKYSTLK  215 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~--~d~~i~v~d~~~~~~~~~~~~~~~  215 (304)
                      +++++-...+.|.+.++............     ......|+++|....|+ +-  ..+.|...++....  ..   .+.
T Consensus        93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~-----l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~--~~---~l~  162 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDGQHRQVLVWKD-----LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE--RT---TLV  162 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSTTCEEEECSS-----CCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CE---EEE
T ss_pred             EEEEEECCCCEEEEEecCCCcEEEEEeCC-----CCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc--eE---EEE
Confidence            45555556778999998754322222111     12567999999655666 43  35678888876422  11   111


Q ss_pred             ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       216 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      .    .......++++++++.++++-...+.|..+|+..... ..+...-.....+++..  ..|+.+....+.|...|.
T Consensus       163 ~----~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          163 P----NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANK  235 (628)
T ss_dssp             C----SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET--TEEEEEETTTTEEEEEET
T ss_pred             C----CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC--CEEEEecCCCCEEEEEEC
Confidence            1    2234789999996677777777788999999865433 23332333456777754  355555536888999987


Q ss_pred             ccce
Q 022019          296 RKAV  299 (304)
Q Consensus       296 ~~~~  299 (304)
                      .+|+
T Consensus       236 ~tg~  239 (628)
T 4a0p_A          236 TSGQ  239 (628)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            6664

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.97  E-value=0.0089  Score=53.55  Aligned_cols=211  Identities=9%  Similarity=0.022  Sum_probs=120.4

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      ....|.++...++|. |..|+.++-|..++........-......  ....      ......|.++..       +++|
T Consensus       311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~--~~~~------~l~~~~v~~i~~-------d~~g  374 (781)
T 3v9f_A          311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQ--MNES------SLSNKVVSSVCD-------DGQG  374 (781)
T ss_dssp             SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----C--CCSS------CCSSSCEEEEEE-------CTTS
T ss_pred             CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccc--cccC------CCCCcceEEEEE-------cCCC
Confidence            356799999998886 44566667788888765433111000000  0000      001244666654       4455


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccc
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                      . |..|+.++-|..||..++.... +.... ......|.++..++++.+.++..++.+..+|..+.  .+   ...... 
T Consensus       375 ~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~-~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~--~~---~~~~~~-  445 (781)
T 3v9f_A          375 K-LWIGTDGGGINVFENGKRVAIY-NKENR-ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLK--KF---QIIELE-  445 (781)
T ss_dssp             C-EEEEEBSSCEEEEETTEEEEEC-C------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSC--EE---EECCST-
T ss_pred             C-EEEEeCCCcEEEEECCCCeEEE-ccCCC-CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCC--cE---EEeccC-
Confidence            5 4456655569999976543322 11110 11223789999998888777666678999987652  11   111110 


Q ss_pred             cccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccc-----cCCeEEEEECCCCcEEEEeeccCCeEEEE
Q 022019          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-----EGGVTHVQFSRDGNYLYTGGRKDPYILCW  293 (304)
Q Consensus       219 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~d~~i~vw  293 (304)
                      ......|.++...+ ++. |..|+. +-|..||..+++........     ...|.++...++|...+... .+| |..|
T Consensus       446 ~~~~~~v~~i~~d~-~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~~G-l~~~  520 (781)
T 3v9f_A          446 KNELLDVRVFYEDK-NKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF-GGG-VGIY  520 (781)
T ss_dssp             TTCCCCEEEEEECT-TSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES-SSC-EEEE
T ss_pred             CCCCCeEEEEEECC-CCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc-CCC-EEEE
Confidence            11234588888887 454 555666 56889998765433222211     35799999999998655433 244 7778


Q ss_pred             ecccce
Q 022019          294 DLRKAV  299 (304)
Q Consensus       294 d~~~~~  299 (304)
                      |..+++
T Consensus       521 ~~~~~~  526 (781)
T 3v9f_A          521 TPDMQL  526 (781)
T ss_dssp             CTTCCE
T ss_pred             eCCCCe
Confidence            876653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.90  E-value=0.0031  Score=54.43  Aligned_cols=157  Identities=15%  Similarity=0.112  Sum_probs=91.1

Q ss_pred             EEEEeCCCCEEEEEcCCCeeeEEeecccccccccceE-EEEECCCCcEEEEE------cCCeEEEEEcCCCCccceeeee
Q 022019          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAF-SVAFNPTGTKIFAG------YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       141 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      +++++.|+.|..+|..+|+.+.......... ...+. ...+ .++..++.+      .++.|+-+|.+++....+....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~-~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKV-GSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGG-TCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCc-cceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            7778889999999999999887665432100 00111 1111 145444432      2789999999886433221111


Q ss_pred             eeccc------------------------------cccccceeEEEeecCCCcEEEEEecC----------------CeE
Q 022019          214 LKGNK------------------------------EGQAGIMSAIAFSPTHTGMLAIGSYS----------------QTS  247 (304)
Q Consensus       214 ~~~~~------------------------------~~~~~~v~~~~~~p~~~~~l~~~~~d----------------g~i  247 (304)
                      .....                              .+....-..+++.+ ...+++.++.+                +.|
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv  280 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCCCCccccCcccCCCccccceE
Confidence            00000                              00000012356667 44466666655                379


Q ss_pred             EEEecCCceEeEEeccccC----------CeEEEEEC-CCC---cEEEEeeccCCeEEEEecccceeee
Q 022019          248 AIYREDNMELLYVLHGQEG----------GVTHVQFS-RDG---NYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       248 ~i~d~~~~~~~~~~~~~~~----------~v~~~~~~-~~~---~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      .-+|.++++.+-.+.....          ++. +... .+|   ..++.++ .+|.++++|.++|+.+.
T Consensus       281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD-RNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC-TTSEEEEEETTTCCEEE
T ss_pred             EEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC-CCcEEEEEECCCCCEee
Confidence            9999999998877763211          121 2222 567   5677787 89999999999998763

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.87  E-value=5e-05  Score=66.83  Aligned_cols=155  Identities=14%  Similarity=-0.002  Sum_probs=89.2

Q ss_pred             ccceeCCCccEEEEE-eCCCCEEEEEcCC----CeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcC
Q 022019          130 HMSASDPTSCVFAST-TRDHPIHLWDATT----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVH  202 (304)
Q Consensus       130 ~~~~~~~~~~~l~~~-~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~  202 (304)
                      ..+++++.+..|+.+ ...+.|+.+++..    ......+...     ......|++++.+..|+ +- ..+.|.++++.
T Consensus       409 ~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~-----~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          409 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-----IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC-----C--CCCEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred             EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC-----CCCcceEEEEeeCCcEEEEeccCCeEEEEecC
Confidence            344556655444444 4567899999875    1111111110     11345788887555555 43 67889999986


Q ss_pred             CCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC-CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEE
Q 022019          203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  281 (304)
                      ...  .   ..+.   .........++++|.++.++++-... +.|..+++........+...-.....|+|+|++..|+
T Consensus       484 g~~--~---~~l~---~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY  555 (699)
T 1n7d_A          484 GVK--R---KTLF---REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY  555 (699)
T ss_dssp             SCC--E---EEEC---CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEE
T ss_pred             CCc--e---EEEE---eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEE
Confidence            421  1   1111   11122357889999666666554333 7888888754322222222223457899999877776


Q ss_pred             EeeccCCeEEEEeccc
Q 022019          282 TGGRKDPYILCWDLRK  297 (304)
Q Consensus       282 ~~~~~d~~i~vwd~~~  297 (304)
                      .+....+.|.++++..
T Consensus       556 ~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          556 WVDSKLHSISSIDVNG  571 (699)
T ss_dssp             EEETTTTEEEEECSSS
T ss_pred             EEecCCCeEEEEccCC
Confidence            6654678899999864

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.82  E-value=0.00094  Score=58.52  Aligned_cols=193  Identities=10%  Similarity=0.028  Sum_probs=96.7

Q ss_pred             EEEEcCCCCeEEEec-CC-----CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           65 GIKWSPDGSSFLTSS-ED-----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        65 ~i~~s~~~~~l~s~~-~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      +++..++|+.++.|+ .+     ..+.+||..++..........                 .+.... .  ....+..++
T Consensus       291 s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~-----------------~p~~~~-~--~~~~~~~~~  350 (656)
T 1k3i_A          291 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV-----------------NPMLTA-D--KQGLYRSDN  350 (656)
T ss_dssp             EEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCS-----------------GGGCCC-C--TTGGGTTTC
T ss_pred             ceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccc-----------------cccccc-c--ccceeecCC
Confidence            345557888888888 34     468889887654321100000                 000000 0  001112344


Q ss_pred             cEEEEEeCCC---------CEEEEEcCCCeeeEEeecccc----cccccceEEEEECC-CCcEEEEE-cCC---------
Q 022019          139 CVFASTTRDH---------PIHLWDATTGLLRCTYRAYDA----VDEITAAFSVAFNP-TGTKIFAG-YNK---------  194 (304)
Q Consensus       139 ~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~----~~~~~~v~~i~~~~-~~~~l~~~-~d~---------  194 (304)
                      ..++.++.+|         .+..||..+............    ......-.++.|.. ++++++.| .++         
T Consensus       351 ~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~  430 (656)
T 1k3i_A          351 HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTN  430 (656)
T ss_dssp             SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCC
T ss_pred             ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCc
Confidence            4555554443         467888877654332221110    00001223455544 56666654 332         


Q ss_pred             --eEEEEEcCCCCccceeeeeee-ccccccccceeEEEeecCCCcEEEEEecC-----------CeEEEEecCCceE--e
Q 022019          195 --SVRVFDVHRPGRDFEKYSTLK-GNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----------QTSAIYREDNMEL--L  258 (304)
Q Consensus       195 --~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----------g~i~i~d~~~~~~--~  258 (304)
                        .|.+||..+.  ..   .... .... ....-.+++..| ++.+++.|+.+           ..+.+||..+.+-  +
T Consensus       431 ~~~v~~yd~~~~--~W---~~~~~~~mp-~~R~~~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~  503 (656)
T 1k3i_A          431 AHIITLGEPGTS--PN---TVFASNGLY-FARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ  503 (656)
T ss_dssp             EEEEECCSTTSC--CE---EEECTTCCS-SCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred             ceEEEcCCCCCC--Ce---eEEccCCCC-CCcccCCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec
Confidence              5777877652  11   1111 0111 111123445667 67788888764           4689999877552  2


Q ss_pred             EEeccccCCeEEEEECCCCcEEEEee
Q 022019          259 YVLHGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       259 ~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      ..+...........+.|+|+.++.||
T Consensus       504 ~~~~~~R~~hs~a~ll~dg~v~v~GG  529 (656)
T 1k3i_A          504 NPNSIVRVYHSISLLLPDGRVFNGGG  529 (656)
T ss_dssp             CCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred             CCCCCccccccHhhcCCCcEEEecCC
Confidence            22222223334566789999999988

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.78  E-value=0.014  Score=50.67  Aligned_cols=152  Identities=13%  Similarity=0.036  Sum_probs=90.3

Q ss_pred             CCCc-cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceee
Q 022019          135 DPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       135 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                      ++.+ .++++=...+.|..+++........+....    ......+++++.+..|+ +. ..+.|.+.++.....     
T Consensus        48 ~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~----~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-----  118 (619)
T 3s94_A           48 VFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG----LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-----  118 (619)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEC-----CEEEECSS----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----
T ss_pred             EeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCC----CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-----
Confidence            4444 444444456778888876543211221111    11677999999776666 54 778999999875211     


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEe-cCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeE
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYI  290 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i  290 (304)
                      ..+.   .........++++|.++.++++-- ..+.|...++............-.....+++++++..|+.+....+.|
T Consensus       119 ~~l~---~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I  195 (619)
T 3s94_A          119 KVLF---WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI  195 (619)
T ss_dssp             EEEE---CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEE---eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeE
Confidence            1111   112233678999996666666542 246787777754333222322334678999999887887776567889


Q ss_pred             EEEecccc
Q 022019          291 LCWDLRKA  298 (304)
Q Consensus       291 ~vwd~~~~  298 (304)
                      ...++...
T Consensus       196 ~~~~~dG~  203 (619)
T 3s94_A          196 HKSNLDGT  203 (619)
T ss_dssp             EEESSSCC
T ss_pred             EEecCCCC
Confidence            99888653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.74  E-value=0.0097  Score=49.50  Aligned_cols=111  Identities=13%  Similarity=0.207  Sum_probs=57.0

Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccccc---ccccceEEEEECCC---CcEEEEE-c-----------
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV---DEITAAFSVAFNPT---GTKIFAG-Y-----------  192 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~v~~i~~~~~---~~~l~~~-~-----------  192 (304)
                      .+++.|+|+++++-...+.|++++..++............   .....+..|+|+|+   +..|+++ .           
T Consensus        31 ~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~  110 (454)
T 1cru_A           31 ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKEL  110 (454)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCS
T ss_pred             EEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcccc
Confidence            3455889987776544456888876555543322222111   12236779999996   5555533 2           


Q ss_pred             --CCeEEEEEcCCCCccceeeeeeec-cccccccceeEEEeecCCCcEEEEEe
Q 022019          193 --NKSVRVFDVHRPGRDFEKYSTLKG-NKEGQAGIMSAIAFSPTHTGMLAIGS  242 (304)
Q Consensus       193 --d~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~  242 (304)
                        ...|.-|+.............+.. ...........|+|.| ++.++++.+
T Consensus       111 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~G  162 (454)
T 1cru_A          111 PNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIG  162 (454)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEEC
T ss_pred             ccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEEC
Confidence              235666665432211111111111 1111122367899999 555555543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.54  E-value=0.0052  Score=49.36  Aligned_cols=148  Identities=14%  Similarity=0.117  Sum_probs=75.4

Q ss_pred             CccceeCCCccEEEEEeCCCCEEEEEcCCCe-eeEEeecccccccccceEEEEECCC---CcEEEEE-c----C----Ce
Q 022019          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPT---GTKIFAG-Y----N----KS  195 (304)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~-~----d----~~  195 (304)
                      |..+++.|+|++++ +..+|.|++++ .+++ ....+....  ........|+++|+   +..|+++ .    +    +.
T Consensus        31 P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~--~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           31 PWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVAN--VGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             EEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCC--STTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceee--cCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            33445577888555 45669999887 4454 111111000  11226789999998   5555533 3    2    57


Q ss_pred             EEEEEcCCCCccceeeeeeec-cccccccceeEEEeecCCCcEEEEEec-------------CCeEEEEecCCc------
Q 022019          196 VRVFDVHRPGRDFEKYSTLKG-NKEGQAGIMSAIAFSPTHTGMLAIGSY-------------SQTSAIYREDNM------  255 (304)
Q Consensus       196 i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d~~~~------  255 (304)
                      |..|+.............+.. ...........++|.| ++.++++.+.             .|.|.-++....      
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            778887543111111111111 0011111246799999 5556665332             245666665421      


Q ss_pred             ---eEeEEeccccCCeEEEEECC-CCcEEEEe
Q 022019          256 ---ELLYVLHGQEGGVTHVQFSR-DGNYLYTG  283 (304)
Q Consensus       256 ---~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  283 (304)
                         ..+. ..++.. ...++|+| +|...++-
T Consensus       186 f~~~~i~-a~G~rn-p~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          186 FPNSPIW-SYGHRN-PQGIDWHRASGVMVATE  215 (354)
T ss_dssp             STTCCEE-EECCSC-CCEEEECTTTCCEEEEE
T ss_pred             CCCCcEE-EEccCC-cceEEEeCCCCCEEEEe
Confidence               0111 123433 46899999 56644443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.51  E-value=0.0046  Score=49.64  Aligned_cols=107  Identities=15%  Similarity=0.074  Sum_probs=56.5

Q ss_pred             CccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC---CcEEEEE--cC-----CeEEE
Q 022019          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT---GTKIFAG--YN-----KSVRV  198 (304)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~--~d-----~~i~v  198 (304)
                      |..+++.|+|+++++ ..+|.|++++  +++........-..........|+|+|+   +..|+++  ..     +.|..
T Consensus        33 P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           33 PWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             EEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            444556889985554 5669999998  4543221111100011236789999998   5555533  22     67888


Q ss_pred             EEcCCCCccceeeeeeecccc---ccccceeEEEeecCCCcEEEEE
Q 022019          199 FDVHRPGRDFEKYSTLKGNKE---GQAGIMSAIAFSPTHTGMLAIG  241 (304)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~  241 (304)
                      |+....  .......+.....   +.......++|.| ++.++++.
T Consensus       110 ~~~~~~--~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~  152 (352)
T 2ism_A          110 LRHLGE--RGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTT  152 (352)
T ss_dssp             EEECSS--CEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEEC
T ss_pred             EEeCCC--CcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEE
Confidence            887632  1111111111011   1112246899999 55565553

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.42  E-value=0.008  Score=48.24  Aligned_cols=152  Identities=11%  Similarity=0.075  Sum_probs=76.6

Q ss_pred             cCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccc--cccccceEEEEECCC---CcEEEEE--c-------C
Q 022019          128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA--VDEITAAFSVAFNPT---GTKIFAG--Y-------N  193 (304)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~v~~i~~~~~---~~~l~~~--~-------d  193 (304)
                      .|..+++.|+|+.|+++...|.|++++. .+.....+.....  .........|+++|+   +..|+++  .       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            3455566889983445556799999985 3432211111100  011225689999996   5555532  2       2


Q ss_pred             CeEEEEEcCCCCccceeeeeeecccc---ccccceeEEEeecCCCcEEEEEec-------------CCeEEEEecCCce-
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKE---GQAGIMSAIAFSPTHTGMLAIGSY-------------SQTSAIYREDNME-  256 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d~~~~~-  256 (304)
                      ..|..|++............+.....   ........++|.| ++.++++.+.             .|.|.-++....- 
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            35777776543222222222211111   1111245799999 5655555433             2467667664320 


Q ss_pred             -----------EeEEe-ccccCCeEEEEECC-CCcEEEEe
Q 022019          257 -----------LLYVL-HGQEGGVTHVQFSR-DGNYLYTG  283 (304)
Q Consensus       257 -----------~~~~~-~~~~~~v~~~~~~~-~~~~l~~~  283 (304)
                                 ....+ .++. ....++|+| +|. |+++
T Consensus       177 ~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~-l~~~  214 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNA-LWLN  214 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTE-EEEE
T ss_pred             CCCCCcCCCCCCccEEEEcCc-CccceEEECCCCC-EEEE
Confidence                       11111 2333 358899999 555 4443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.24  E-value=0.045  Score=42.69  Aligned_cols=146  Identities=13%  Similarity=0.120  Sum_probs=76.5

Q ss_pred             CccEEEEEeCC------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-c---------CCeEEEEE
Q 022019          137 TSCVFASTTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y---------NKSVRVFD  200 (304)
Q Consensus       137 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~---------d~~i~v~d  200 (304)
                      ++.+++.|+.+      ..+.+||+.+.+....-......   .....+.+  ++++++.| .         -..+.+||
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd  175 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR---CSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYD  175 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC---BSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEE
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc---ceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeC
Confidence            56677777654      45899999887654432221110   01122222  45555543 2         34588999


Q ss_pred             cCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC-----CeEEEEecCCce--EeEEeccccCCeEEEEE
Q 022019          201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNME--LLYVLHGQEGGVTHVQF  273 (304)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~--~~~~~~~~~~~v~~~~~  273 (304)
                      +.+.  ....+..+.   . ..... +++..  ++.+++.|+.+     ..+.+||+.+.+  .+..+.........+.+
T Consensus       176 ~~~~--~W~~~~~~p---~-~r~~~-~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  246 (306)
T 3ii7_A          176 PATE--TWTELCPMI---E-ARKNH-GLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV  246 (306)
T ss_dssp             TTTT--EEEEECCCS---S-CCBSC-EEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE
T ss_pred             CCCC--eEEECCCcc---c-hhhcc-eEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE
Confidence            8763  222222111   1 11111 22222  45677777654     358999988754  33223222223334444


Q ss_pred             CCCCcEEEEeeccC-----CeEEEEecccce
Q 022019          274 SRDGNYLYTGGRKD-----PYILCWDLRKAV  299 (304)
Q Consensus       274 ~~~~~~l~~~~~~d-----~~i~vwd~~~~~  299 (304)
                        ++..++.|| .+     ..+.+||+.+.+
T Consensus       247 --~~~i~v~GG-~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          247 --GSIVYVLAG-FQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             --TTEEEEEEC-BCSSSBCCEEEEEETTTTE
T ss_pred             --CCEEEEEeC-cCCCeeeeeEEEEcCCCCe
Confidence              567777777 44     468889987754

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.22  E-value=0.025  Score=45.38  Aligned_cols=105  Identities=18%  Similarity=0.255  Sum_probs=63.6

Q ss_pred             ceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecC---CCcEEEEEecC-----Ce
Q 022019          175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT---HTGMLAIGSYS-----QT  246 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~d-----g~  246 (304)
                      ....++|.|+|+++++..++.|++++ ..  . ...+..+. ...........++|+|+   ++.++++-+.+     +.
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~-~g--~-~~~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR-EG--R-LSTYAELS-VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE-TT--E-EEEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE-CC--C-ccEeecce-EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            55799999999977777779999998 22  1 11111111 11122345789999995   35565555543     67


Q ss_pred             EEEEecCCc-----eEe-EEec---cccCCeEEEEECCCCcEEEEee
Q 022019          247 SAIYREDNM-----ELL-YVLH---GQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       247 i~i~d~~~~-----~~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      |..|+....     +.+ ..+.   +.......++|.|||.+.++.+
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            888887643     122 2233   1112346899999997666544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.22  E-value=0.047  Score=42.47  Aligned_cols=146  Identities=15%  Similarity=0.192  Sum_probs=76.3

Q ss_pred             CccEEEEEeCC-----CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC-----CeEEEEEcCCCC
Q 022019          137 TSCVFASTTRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-----KSVRVFDVHRPG  205 (304)
Q Consensus       137 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d-----~~i~v~d~~~~~  205 (304)
                      ++.+++.|+.+     ..+.+||+.+.+....-......   .....+.+  +++.++.| .+     ..+.+||+.+. 
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~-  185 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR---EGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG-  185 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC---BSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT-
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc---ccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC-
Confidence            56677777654     35889998887654432222111   01122222  45555543 33     46889998762 


Q ss_pred             ccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC-----CeEEEEecCCceE--eEEeccccCCeEEEEECCCCc
Q 022019          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMEL--LYVLHGQEGGVTHVQFSRDGN  278 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~  278 (304)
                       ....+..+.   . .......+. .  ++.+++.|+.+     ..+.+||+.+.+-  +..+.........+.+  +++
T Consensus       186 -~W~~~~~~p---~-~r~~~~~~~-~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~  255 (301)
T 2vpj_A          186 -HWTNVTPMA---T-KRSGAGVAL-L--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGR  255 (301)
T ss_dssp             -EEEEECCCS---S-CCBSCEEEE-E--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE
T ss_pred             -cEEeCCCCC---c-ccccceEEE-E--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCE
Confidence             222221111   1 111112222 2  45677888764     4689999987653  2222222222233333  577


Q ss_pred             EEEEeeccC-----CeEEEEecccce
Q 022019          279 YLYTGGRKD-----PYILCWDLRKAV  299 (304)
Q Consensus       279 ~l~~~~~~d-----~~i~vwd~~~~~  299 (304)
                      .++.|| .+     ..+.+||+++.+
T Consensus       256 i~v~GG-~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          256 LYAIAG-YDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             EEEECC-BCSSSBEEEEEEEETTTTE
T ss_pred             EEEEcC-cCCCcccccEEEEcCCCCe
Confidence            777777 54     467888887654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.18  E-value=0.06  Score=42.88  Aligned_cols=149  Identities=14%  Similarity=0.101  Sum_probs=79.1

Q ss_pred             CccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccc-ccccccceEEEEECCC---CcEEEEE----cCCeEEEEE
Q 022019          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD-AVDEITAAFSVAFNPT---GTKIFAG----YNKSVRVFD  200 (304)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~---~~~l~~~----~d~~i~v~d  200 (304)
                      |..+++.|+|.++++--..|.|++++...++......... ..........|+++|+   +..|++.    .++.|.-|.
T Consensus        34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~  113 (347)
T 3das_A           34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRML  113 (347)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEE
T ss_pred             ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEE
Confidence            3344558899877766558999999866555432211110 0112236789999996   3444432    455666676


Q ss_pred             cCCCC---cc---ceeee-eeeccccccccceeEEEeecCCCcEEEEEec-------------CCeEEEEecCCc-----
Q 022019          201 VHRPG---RD---FEKYS-TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-------------SQTSAIYREDNM-----  255 (304)
Q Consensus       201 ~~~~~---~~---~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~i~d~~~~-----  255 (304)
                      +....   ..   .+.+. .+. ....|  ....|.|.| ++.++++.+.             .|.|.-++....     
T Consensus       114 ~~~~~~~~~~~~~~~~i~~~~p-~~~~H--~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          114 YDEKKPSGEQLGAPDTVFRGIP-KGVIH--NGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             BCTTSCTTCCBCCCEEEEEEEC-CCSSC--CCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             eCCCCcccccCCCcEEEEEcCC-CCCCc--cCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            65411   11   11111 111 11223  246799999 5556665432             355555555422     


Q ss_pred             ----eEeEEeccccCCeEEEEECCCCcEEEEe
Q 022019          256 ----ELLYVLHGQEGGVTHVQFSRDGNYLYTG  283 (304)
Q Consensus       256 ----~~~~~~~~~~~~v~~~~~~~~~~~l~~~  283 (304)
                          ..+.. .+|.. ...++|+|+|.+.++=
T Consensus       190 Pf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d  219 (347)
T 3das_A          190 PFPGSPVYS-YGHRN-VQGLAWDDKQRLFASE  219 (347)
T ss_dssp             SSTTCCEEE-BCCSB-CCEEEECTTCCEEEEE
T ss_pred             CCCCCeEEe-eCCCC-cceEEECCCCCEEEEe
Confidence                11211 24544 4689999988755543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.03  E-value=0.09  Score=42.14  Aligned_cols=213  Identities=11%  Similarity=0.059  Sum_probs=102.8

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      -.....|+|.|+|+++++ ..+|.|++++.. +.  ..+....           +..........+++.|.+   ..++.
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~-G~--~~~~~~~-----------v~~~g~~g~~gia~~pdf---~~~g~   89 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISPS-GK--KLVASFD-----------VANVGEAGLLGLALHPEF---PKKSW   89 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECSS-CE--EEEEECC-----------CCCSTTCSEEEEEECTTT---TTSCE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeCC-Cc--eEeeccc-----------eeecCCCceeeEEeCCCC---CcCCE
Confidence            345789999999986555 556899988732 21  0000000           000111334556654321   11244


Q ss_pred             EEEEEeC---C----CCEEEEEcCCC--ee---eEEee-cccccccccceEEEEECCCCcEEEEEcC-------------
Q 022019          140 VFASTTR---D----HPIHLWDATTG--LL---RCTYR-AYDAVDEITAAFSVAFNPTGTKIFAGYN-------------  193 (304)
Q Consensus       140 ~l~~~~~---d----g~i~i~d~~~~--~~---~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~d-------------  193 (304)
                      ++++-+.   +    ..|..|+....  ..   ...+. ......|  ....|.|.|+|.++++..+             
T Consensus        90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~  167 (354)
T 3a9g_A           90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSL  167 (354)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCC
T ss_pred             EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCC
Confidence            4444432   3    56777777654  11   11111 1111111  3457999999986664222             


Q ss_pred             -CeEEEEEcCCCC---ccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC---eEEEEecCC------------
Q 022019          194 -KSVRVFDVHRPG---RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDN------------  254 (304)
Q Consensus       194 -~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~i~d~~~------------  254 (304)
                       |.|.-++....-   ..+.....+   ..++.. ...++|+|+.+.++++-...+   .|.+.....            
T Consensus       168 ~G~I~ri~~dG~~p~~npf~~~~i~---a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~  243 (354)
T 3a9g_A          168 AGKILRVDEEGRPPADNPFPNSPIW---SYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAG  243 (354)
T ss_dssp             SSEEEEECTTSCCCTTSSSTTCCEE---EECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCC
T ss_pred             CeEEEEEcCCCCCCCCCCCCCCcEE---EEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCC
Confidence             345555543210   000000000   022222 467999995555555433222   244332211            


Q ss_pred             ----ceEeEEeccccCCeEEEEEC-------CCCcEEEEeeccCCeEEEEeccc
Q 022019          255 ----MELLYVLHGQEGGVTHVQFS-------RDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       255 ----~~~~~~~~~~~~~v~~~~~~-------~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                          ..++..+.........+.|.       .+|.++++.- ..+.|...++..
T Consensus       244 ~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~-~~~~v~~~~~~~  296 (354)
T 3a9g_A          244 RGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL-RGSMLAAVNFGD  296 (354)
T ss_dssp             CTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET-TTTEEEEEEECG
T ss_pred             CCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc-CCCEEEEEEECC
Confidence                02333441122356788883       4676666655 677888888875

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.02  E-value=0.011  Score=48.08  Aligned_cols=129  Identities=9%  Similarity=0.099  Sum_probs=79.7

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEee-----cCCeEEEEeecCccceeCC
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-----EGESVYDFCWFPHMSASDP  136 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~  136 (304)
                      .|..+..||+|++||..+. ..|.|-.+..+..........    ..-.......+     ...+|..+.|+|...    
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~----~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~----  137 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ----DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSY----  137 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH----HTTEEEEEEGGGCC--CCCCEEEEEECTTBG----
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc----cccceeEEEcCCcccCCCCceeEEEeccccC----
Confidence            5888999999999998865 478988887432211100000    00001111111     246799999999743    


Q ss_pred             CccEEEEEeCCCCEEEEEcCCCeeeE-Eeecccc----cccccceEEEEECCCCcEEEE-E--cCCeEEEE
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLLRC-TYRAYDA----VDEITAAFSVAFNPTGTKIFA-G--YNKSVRVF  199 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~----~~~~~~v~~i~~~~~~~~l~~-~--~d~~i~v~  199 (304)
                      .+..|++-..|+.|++||+....... .+.....    ......|.+++|.+++-.|++ .  ..|.|+-.
T Consensus       138 ~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          138 RDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             GGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             CCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            57789999999999999998632111 2221110    011247889999998876664 3  56777654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.77  E-value=0.075  Score=39.06  Aligned_cols=113  Identities=12%  Similarity=0.080  Sum_probs=60.5

Q ss_pred             CceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC-ccceeCCCcc
Q 022019           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP-HMSASDPTSC  139 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~  139 (304)
                      ..+.+++|+|+|.+.+.  .+|.+.-.+..+.....-                  ......|-..-|.- ..+.|.|+|.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W------------------~~s~t~IG~~Gw~~F~a~~fD~~G~  100 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNW------------------MGRAKKIGNGGWNQFQFLFFDPNGY  100 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCH------------------HHHCEEEECSCGGGCSEEEECTTSC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccc------------------cccccEecccccccceEEEECCCCC
Confidence            46889999999986666  677655555432111000                  00001111111111 1224588998


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeeccccc---ccccceEEEEECCCCcEEEEEcCCeEE
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAV---DEITAAFSVAFNPTGTKIFAGYNKSVR  197 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~d~~i~  197 (304)
                      +.++  .||.|+-++-.+.... .+......   ..-..+..|.|.|+|.+.++. |+.++
T Consensus       101 LYav--~dG~iyr~~pP~~~~~-~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly  157 (236)
T 1tl2_A          101 LYAV--SKDKLYKASPPQSDTD-NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY  157 (236)
T ss_dssp             EEEE--ETTEEEEESCCCSTTC-CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred             EEEe--CCCEEEEeCCCcCCCC-ceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence            8888  5688877764321110 00000000   011267899999999999988 88854

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.74  E-value=0.086  Score=49.67  Aligned_cols=196  Identities=14%  Similarity=0.190  Sum_probs=112.9

Q ss_pred             EcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCC
Q 022019           68 WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD  147 (304)
Q Consensus        68 ~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~d  147 (304)
                      .+|..+.+|.-. ..++.|||+.+........                  -..+|.-..|.      +++  .|+..+ +
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~------------------~~e~VvfWkWi------s~~--~l~lVT-~  124 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHT------------------MTDDVTFWKWI------SLN--TVALVT-D  124 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhcccc------------------cCCCceEEEec------CCC--eeEEEc-C
Confidence            455555555443 5689999987553322111                  12456666773      222  444443 4


Q ss_pred             CCEEEEEcCCC-eeeEEeecccccccccceEEEEECCCCcEEE-EE-------cCCeEEEEEcCCCCccceeeeeeeccc
Q 022019          148 HPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-------YNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       148 g~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-------~d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                      ..|+.|++... .+...+..+.... ...|..-..+++.+.++ +|       ..|.+.+|..+..         .....
T Consensus       125 ~aVyHW~~~~~s~P~k~fdR~~~L~-~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~---------~sQ~i  194 (1630)
T 1xi4_A          125 NAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK---------VSQPI  194 (1630)
T ss_pred             CeEEEeccCCCCccHHHHhcchhcc-cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc---------cchhh
Confidence            56999999642 3333444443322 23677888899998888 44       2377888888642         22222


Q ss_pred             cccccceeEEEee--cCCCcEEEEEec---CCeEEEEecCCc---eEeEE------ecc---ccCCeEEEEECCCCcEEE
Q 022019          219 EGQAGIMSAIAFS--PTHTGMLAIGSY---SQTSAIYREDNM---ELLYV------LHG---QEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       219 ~~~~~~v~~~~~~--p~~~~~l~~~~~---dg~i~i~d~~~~---~~~~~------~~~---~~~~v~~~~~~~~~~~l~  281 (304)
                      .||.+....+...  +....+++.+..   .+.++|.++...   .+...      +..   ...--.++..++.-..++
T Consensus       195 egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy  274 (1630)
T 1xi4_A          195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  274 (1630)
T ss_pred             hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEE
Confidence            5555544444432  212223333332   268899888542   11111      111   122345677788888888


Q ss_pred             EeeccCCeEEEEecccceeee
Q 022019          282 TGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       282 ~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      ... .-|.|.++|+.+|.++.
T Consensus       275 ~it-k~G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          275 LIT-KYGYIHLYDLETGTCIY  294 (1630)
T ss_pred             EEe-cCceEEEEecccchhhh
Confidence            888 89999999999998764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.66  E-value=0.087  Score=38.74  Aligned_cols=144  Identities=11%  Similarity=0.006  Sum_probs=72.5

Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccc-c--ccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccc
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA-V--DEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~--~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~  208 (304)
                      ++|+|+|.+.++  .+|.++-.+..+..... +..... .  ..-.....+.|+|+|.+.++ .||.|+-++--+.+.. 
T Consensus        46 laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~-W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~-  120 (236)
T 1tl2_A           46 LFLSPGGELYGV--LNDKIYKGTPPTHDNDN-WMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTD-  120 (236)
T ss_dssp             EEECTTSCEEEE--ETTEEEEESCCCSTTCC-HHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-
T ss_pred             EEECCCccEEEE--eCCeEEEECCCCCCccc-ccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCC-
Confidence            355888887777  66766665554321110 000000 0  00012368999999998888 7798887775332111 


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce------EeEEec-cccCCeEEEEECCCCcEEE
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME------LLYVLH-GQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~-~~~~~v~~~~~~~~~~~l~  281 (304)
                      ..+..-......-=..+..+.|.| ++.+.++.  |+.++-....+..      ....+- ..-...+.+.|.|+|...+
T Consensus       121 ~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~  197 (236)
T 1tl2_A          121 NWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFG  197 (236)
T ss_dssp             CHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEE
T ss_pred             ceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEE
Confidence            000000000011113478999999 67666655  7875433222111      011111 2222345577999887655


Q ss_pred             Ee
Q 022019          282 TG  283 (304)
Q Consensus       282 ~~  283 (304)
                      +.
T Consensus       198 v~  199 (236)
T 1tl2_A          198 VQ  199 (236)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.64  E-value=0.16  Score=39.45  Aligned_cols=146  Identities=9%  Similarity=0.119  Sum_probs=75.0

Q ss_pred             CccEEEEEeCCC-----CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-Ec-------CCeEEEEEcCC
Q 022019          137 TSCVFASTTRDH-----PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GY-------NKSVRVFDVHR  203 (304)
Q Consensus       137 ~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~-------d~~i~v~d~~~  203 (304)
                      ++.+++.|+.++     .+.+||+.+.+....-.....   ......+.+  +++.++. |.       -..+.+||+.+
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~  182 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTR---RSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATT  182 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSC---CBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCc---ccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence            566777777553     478899887765443222111   111122222  4555554 32       24588999875


Q ss_pred             CCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC-----CeEEEEecCCceE--eEEeccccCCeEEEEECCC
Q 022019          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMEL--LYVLHGQEGGVTHVQFSRD  276 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~  276 (304)
                      .  .......+.   .. .... +++..  ++.+++.|+.+     ..+.+||+.+.+-  +..+.........+.+  +
T Consensus       183 ~--~W~~~~~~p---~~-r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~  251 (302)
T 2xn4_A          183 N--EWTYIAEMS---TR-RSGA-GVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--N  251 (302)
T ss_dssp             T--EEEEECCCS---SC-CBSC-EEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T
T ss_pred             C--cEEECCCCc---cc-cccc-cEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--C
Confidence            2  222221111   11 1111 22222  45678888765     3689999987642  2222211112222333  5


Q ss_pred             CcEEEEeeccCC-----eEEEEecccce
Q 022019          277 GNYLYTGGRKDP-----YILCWDLRKAV  299 (304)
Q Consensus       277 ~~~l~~~~~~d~-----~i~vwd~~~~~  299 (304)
                      +..++.|| .++     .+.+||+.+.+
T Consensus       252 ~~i~v~GG-~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          252 GLLYVVGG-DDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             TEEEEECC-BCSSSBCCCEEEEETTTTE
T ss_pred             CEEEEECC-cCCCcccccEEEEcCCCCe
Confidence            77777777 543     48899987764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.64  E-value=0.21  Score=40.84  Aligned_cols=202  Identities=11%  Similarity=0.095  Sum_probs=118.9

Q ss_pred             EEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEe
Q 022019           66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT  145 (304)
Q Consensus        66 i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  145 (304)
                      .-.+|..+.+|.-. ..++.|||+++.....                  ...-...|.-..|.      +  .+.|+..+
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klk------------------s~~~~e~VvfWkWi------s--~~~l~lVT  123 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMK------------------AHTMTDDVTFWKWI------S--LNTVALVT  123 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEE------------------EEECSSCCCEEEEE------E--TTEEEEEC
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhc------------------ceecCCCceEEEec------C--CCeEEEEc
Confidence            34566666665544 5689999998543221                  11112455556663      2  22444444


Q ss_pred             CCCCEEEEEcCC-CeeeEEeecccccccccceEEEEECCCCcEEE-EE---cC----CeEEEEEcCCCCccc--------
Q 022019          146 RDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YN----KSVRVFDVHRPGRDF--------  208 (304)
Q Consensus       146 ~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~---~d----~~i~v~d~~~~~~~~--------  208 (304)
                       +..|+-|++.. ..+...+.-+.... ...|..-..+++.+.++ +|   .+    |.+.+|..+......        
T Consensus       124 -~taVyHWsi~~~s~P~kvFdR~~~L~-~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F  201 (494)
T 1bpo_A          124 -DNAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASF  201 (494)
T ss_dssp             -SSEEEEEESSSSCCCEEEEECCGGGT-TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEE
T ss_pred             -CCeeEEecccCCCCchhheecchhcc-cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeee
Confidence             45699999874 34555555555433 34677777788888777 43   22    456666665421000        


Q ss_pred             -----------eeeee--------------------------------eeccccccccceeEEEeecCCCcEEEEEecCC
Q 022019          209 -----------EKYST--------------------------------LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ  245 (304)
Q Consensus       209 -----------~~~~~--------------------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  245 (304)
                                 ..+..                                +....+...+-..++..++ .-.++..-+.-|
T Consensus       202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G  280 (494)
T 1bpo_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYG  280 (494)
T ss_dssp             EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTS
T ss_pred             EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCc
Confidence                       00000                                0000011122344666677 444778889999


Q ss_pred             eEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          246 TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       246 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      .|++||+.++.++..-+-....|...+-+....-++... ..|.|.--.++..
T Consensus       281 ~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vn-r~GqVl~v~v~e~  332 (494)
T 1bpo_A          281 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN-RKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEE-TTCEEEEEEECTT
T ss_pred             eEEEEecccceeeeeecccCCceEEecccCCCCcEEEEc-cCceEEEEEEccc
Confidence            999999999999988876677777766666655666677 7888776666554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.62  E-value=0.2  Score=40.14  Aligned_cols=70  Identities=9%  Similarity=0.082  Sum_probs=43.2

Q ss_pred             ceeEEEeecC------CCcEEEEEecCCeEEEEecCCceEeEE--e-ccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          224 IMSAIAFSPT------HTGMLAIGSYSQTSAIYREDNMELLYV--L-HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       224 ~v~~~~~~p~------~~~~l~~~~~dg~i~i~d~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      .+..+.|.+.      .+.++++.-..+.|...++..++.+..  + ......+..+++.|||.+.++....+|  +||.
T Consensus       272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~r  349 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELLK  349 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEEE
T ss_pred             CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEEE
Confidence            4667777641      255666666678888888876544322  2 222347899999999985554321344  4554


Q ss_pred             c
Q 022019          295 L  295 (304)
Q Consensus       295 ~  295 (304)
                      +
T Consensus       350 i  350 (353)
T 2g8s_A          350 V  350 (353)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.56  E-value=0.19  Score=39.25  Aligned_cols=146  Identities=10%  Similarity=0.193  Sum_probs=75.0

Q ss_pred             CccEEEEEeCC-----CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC-----CeEEEEEcCCCC
Q 022019          137 TSCVFASTTRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-----KSVRVFDVHRPG  205 (304)
Q Consensus       137 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d-----~~i~v~d~~~~~  205 (304)
                      ++.+++.|+.+     ..+.+||+.+.+....-.....   ......+.+  ++++++.| .+     ..+.+||+.+. 
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-  194 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR---RIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN-  194 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC---CBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT-
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc---ccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC-
Confidence            55667776543     3588999987764432221111   011122333  45555543 33     46889998752 


Q ss_pred             ccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC-----CeEEEEecCCceE--eEEeccccCCeEEEEECCCCc
Q 022019          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMEL--LYVLHGQEGGVTHVQFSRDGN  278 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~  278 (304)
                       .......+.    ........+.+   ++.+++.|+.+     ..+.+||+.+.+-  +..+.........+.+  +++
T Consensus       195 -~W~~~~~~p----~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~  264 (308)
T 1zgk_A          195 -EWRMITAMN----TIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGR  264 (308)
T ss_dssp             -EEEECCCCS----SCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE
T ss_pred             -eEeeCCCCC----CccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCE
Confidence             222221111    11111222222   45677888765     4699999887643  2222221222233333  567


Q ss_pred             EEEEeeccC-----CeEEEEecccce
Q 022019          279 YLYTGGRKD-----PYILCWDLRKAV  299 (304)
Q Consensus       279 ~l~~~~~~d-----~~i~vwd~~~~~  299 (304)
                      .++.|| .+     ..+.+||+.+.+
T Consensus       265 i~v~GG-~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          265 IYVLGG-YDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             EEEECC-BCSSCBCCEEEEEETTTTE
T ss_pred             EEEEcC-cCCCcccceEEEEcCCCCE
Confidence            777777 43     457888887754

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.52  E-value=0.2  Score=39.16  Aligned_cols=146  Identities=8%  Similarity=0.155  Sum_probs=73.8

Q ss_pred             CccEEEEEeCC--------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-c-C-----CeEEEEEc
Q 022019          137 TSCVFASTTRD--------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y-N-----KSVRVFDV  201 (304)
Q Consensus       137 ~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~-d-----~~i~v~d~  201 (304)
                      ++.+++.|+.+        ..+.+||+.+.+....-..+..   . .-.++.. -+++.++.| . +     ..+.+||+
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~  172 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV---V-YGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDP  172 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC---C-BSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEET
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc---c-cceeEEE-ECCEEEEEeCCCCCCcccceEEEEeC
Confidence            55667777632        4589999988764332221111   0 1112222 245555544 4 2     46889998


Q ss_pred             CCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC-----eEEEEecCCce--EeEEeccccCCeEEEEEC
Q 022019          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-----TSAIYREDNME--LLYVLHGQEGGVTHVQFS  274 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~  274 (304)
                      .+.  .......+.   . ..... +++..  ++.+++.|+.++     .+.+||+.+.+  .+..+.........+.+ 
T Consensus       173 ~~~--~W~~~~~~p---~-~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-  242 (315)
T 4asc_A          173 KKF--EWKELAPMQ---T-ARSLF-GATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL-  242 (315)
T ss_dssp             TTT--EEEECCCCS---S-CCBSC-EEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred             CCC--eEEECCCCC---C-chhce-EEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE-
Confidence            762  222221111   1 11111 22222  456788887654     58899987764  22222222222233333 


Q ss_pred             CCCcEEEEeeccC--------------CeEEEEecccce
Q 022019          275 RDGNYLYTGGRKD--------------PYILCWDLRKAV  299 (304)
Q Consensus       275 ~~~~~l~~~~~~d--------------~~i~vwd~~~~~  299 (304)
                       +++.++.|| .+              ..+.+||+.+.+
T Consensus       243 -~~~l~v~GG-~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          243 -VGTLYAIGG-FATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             -TTEEEEEEE-EEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             -CCEEEEECC-ccccCcCCccccccccCcEEEecCCCCh
Confidence             567777777 43              246788887653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.45  E-value=0.24  Score=39.13  Aligned_cols=194  Identities=9%  Similarity=0.047  Sum_probs=100.0

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      ...+.+|.|.+++..+++ +.+|.| +...+.++.-.......             ......+..+.+       ++ +.
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~-------------~~~~~~~~~i~~-------~~-~~   91 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVL-------------DHSDYRFNSVSF-------QG-NE   91 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCC-------------SCCCCEEEEEEE-------ET-TE
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCC-------------CCCCccEEEEEe-------cC-Ce
Confidence            346899999877777774 456654 33333222111110000             001234566655       33 33


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeecccc
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  219 (304)
                      .++ ++..+.|+. ....|+.-.......  .....+..+.+.+++..++++.++.|.  --...+.......      .
T Consensus        92 ~~~-~g~~g~i~~-S~DgG~tW~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~g~v~--~S~DgG~tW~~~~------~  159 (327)
T 2xbg_A           92 GWI-VGEPPIMLH-TTDGGQSWSQIPLDP--KLPGSPRLIKALGNGSAEMITNVGAIY--RTKDSGKNWQALV------Q  159 (327)
T ss_dssp             EEE-EEETTEEEE-ESSTTSSCEECCCCT--TCSSCEEEEEEEETTEEEEEETTCCEE--EESSTTSSEEEEE------C
T ss_pred             EEE-EECCCeEEE-ECCCCCCceECcccc--CCCCCeEEEEEECCCCEEEEeCCccEE--EEcCCCCCCEEee------c
Confidence            344 445564433 333344322222111  011246678777777777777666543  2233333333222      1


Q ss_pred             ccccceeEEEeecCCCcEEEEEecCCeEEE-Eec--CCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAI-YRE--DNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       220 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i-~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      .....+..+.+.| ++.+++++. +|.+.. .|-  .+.+.+.  ......+..+.+.+++..++. + .+|.+++.+
T Consensus       160 ~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~-~~G~~~~s~  231 (327)
T 2xbg_A          160 EAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-V-NGGKIAFSD  231 (327)
T ss_dssp             SCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-E-TTTEEEEEE
T ss_pred             CCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-e-CCceEEEec
Confidence            2334578899999 666666554 454443 442  3444442  234567899999999876654 4 578777764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.45  E-value=0.13  Score=42.82  Aligned_cols=108  Identities=11%  Similarity=0.135  Sum_probs=63.0

Q ss_pred             ceEEEEECCCCcEEEEEcCC-eEEEEEcCCCCccceeeeeeecccc--ccccceeEEEeecC---CCcEEEEEec-----
Q 022019          175 AAFSVAFNPTGTKIFAGYNK-SVRVFDVHRPGRDFEKYSTLKGNKE--GQAGIMSAIAFSPT---HTGMLAIGSY-----  243 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~---~~~~l~~~~~-----  243 (304)
                      ..+.|+|.|+|+++++...+ .|++++...+.  ...+..+.....  .....+..|+|+|+   ++.++++-+.     
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~--~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGS--VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCc--EeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            55799999999988887654 78888764321  122222211111  12345779999995   5655555543     


Q ss_pred             -------CCeEEEEecCCc-------eEeE-Eec-cccCCeEEEEECCCCcEEEEee
Q 022019          244 -------SQTSAIYREDNM-------ELLY-VLH-GQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       244 -------dg~i~i~d~~~~-------~~~~-~~~-~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                             ...|.-|+....       +.+. .+. ........|.|.|||.+.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   234555554321       1222 122 1123578999999998777665

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.44  E-value=0.25  Score=39.37  Aligned_cols=54  Identities=13%  Similarity=0.063  Sum_probs=29.5

Q ss_pred             eEEEEecCCce--EeEEeccccCCeEEEEECCCCcEEEEeeccCC------eEEEEecccceeee
Q 022019          246 TSAIYREDNME--LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP------YILCWDLRKAVQVV  302 (304)
Q Consensus       246 ~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~------~i~vwd~~~~~~~~  302 (304)
                      .+.+||+.+.+  .+..+......-.++.+  +++.++.|| .++      .|.++++++++.+.
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG-~~~~~~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVSLPW--NNSLLIIGG-ETAGGKAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEEEEE--TTEEEEEEE-ECGGGCEEEEEEEEEC-CCSCEE
T ss_pred             eEEEEecCCCceeeCCCCCCCcccceeEEe--CCEEEEEee-eCCCCCEeeeEEEEEEcCcEeEe
Confidence            57889987643  44444432222233333  677778887 442      46667888877654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.31  E-value=0.35  Score=39.61  Aligned_cols=107  Identities=9%  Similarity=0.089  Sum_probs=63.7

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      +|..+.+|.=. ..++.+||+++.+....+....      .|.--.|-.+ +.|+.-.+..|+-|++.....+.+.+.. 
T Consensus        74 nP~~~iiALra-g~~lQiFnle~K~klks~~~~e------~VvfWkWis~-~~l~lVT~taVyHWsi~~~s~P~kvFdR-  144 (494)
T 1bpo_A           74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------DVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDR-  144 (494)
T ss_dssp             CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS------CCCEEEEEET-TEEEEECSSEEEEEESSSSCCCEEEEEC-
T ss_pred             CCCCcEEEEec-CCeEEEEchHHhhhhcceecCC------CceEEEecCC-CeEEEEcCCeeEEecccCCCCchhheec-
Confidence            56666666654 6789999999998888777655      5666666543 4555556788999999763333322221 


Q ss_pred             eccccccccceeEEEeecCCCcEEE-EEe------cCCeEEEEecC
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLA-IGS------YSQTSAIYRED  253 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~-~~~------~dg~i~i~d~~  253 (304)
                      .....  ...|..-..++ +.++++ +|-      -.|.+.+|..+
T Consensus       145 ~~~L~--~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~e  187 (494)
T 1bpo_A          145 HSSLA--GCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVD  187 (494)
T ss_dssp             CGGGT--TCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred             chhcc--cceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecc
Confidence            11111  23466666677 333333 332      13456666654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.19  E-value=0.64  Score=41.43  Aligned_cols=200  Identities=8%  Similarity=0.062  Sum_probs=108.0

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      ...|.++.-..+| .|..|+.+| +..||..+......    .    ..         ....|.++..        .++.
T Consensus        62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~----~----~~---------~~~~i~~i~~--------~~g~  114 (758)
T 3ott_A           62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQP----E----TD---------FPTDVRTMAL--------QGDT  114 (758)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCC----S----CC---------CCSCEEEEEE--------ETTE
T ss_pred             CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECc----c----cC---------CCceEEEEEe--------cCCc
Confidence            4568898887776 455556555 78899875432210    0    00         0122333321        1343


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeecccc
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  219 (304)
                       |..++.+ -+..+|..+++... +...........|.++..++++.+.++.. +.+..||....  .+..+. ......
T Consensus       115 -lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~--~~~~~~-~~~~~~  187 (758)
T 3ott_A          115 -LWLGALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQIYVGTY-NGLCRYIPSNG--KFEGIP-LPVHSS  187 (758)
T ss_dssp             -EEEEETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCCEEEEET-TEEEEEETTTT--EEEEEC-CCCCTT
T ss_pred             -EEEEcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCCEEEEeC-CCHhhCccCCC--ceEEec-CCCccc
Confidence             5555555 48889987665432 21110001123688888888888776544 46888887542  111111 000000


Q ss_pred             ccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       220 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      .....|.++...+ .+..|.+|+. +-+..+|..+++...........|.++...++|.+.+ |. .+| |.+++..++
T Consensus       188 ~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT-~~G-l~~~~~~~~  261 (758)
T 3ott_A          188 QSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GT-DNG-LYVYHNDTT  261 (758)
T ss_dssp             CSSCCEEEEEEET-TTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EE-TTE-EEEECCTTS
T ss_pred             cccceeEEEEEEC-CCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-Ee-CCc-eeEEecCCC
Confidence            1123477887777 4444555664 4688899876643221111234588888888887554 44 444 777877654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.09  E-value=0.23  Score=38.51  Aligned_cols=146  Identities=10%  Similarity=0.173  Sum_probs=75.7

Q ss_pred             CccEEEEEeCC-----CCEEEEEcCCCe---eeEEeecccccccccceEEEEECCCCcEEEEE-cC-----CeEEEEEcC
Q 022019          137 TSCVFASTTRD-----HPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-----KSVRVFDVH  202 (304)
Q Consensus       137 ~~~~l~~~~~d-----g~i~i~d~~~~~---~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d-----~~i~v~d~~  202 (304)
                      ++.+++.|+.+     ..+.+||+.+.+   ....-.....   ......+.+  +++.++.| .+     ..+.+||+.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~---r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~  136 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR---RGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPN  136 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSC---CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCC---ccceeEEEE--CCEEEEEcccCCCcccceEEEEcCC
Confidence            56677777754     468999998776   4332221111   011122222  45555544 32     468889986


Q ss_pred             CCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC-----CeEEEEecCCceE--eEEeccccCCeEEEEECC
Q 022019          203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMEL--LYVLHGQEGGVTHVQFSR  275 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~  275 (304)
                      +.  ....+..+....    ... +++..  ++.+++.|+.+     ..+.+||+.+.+-  +..+.........+.+  
T Consensus       137 ~~--~W~~~~~~p~~r----~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--  205 (301)
T 2vpj_A          137 ID--QWSMLGDMQTAR----EGA-GLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--  205 (301)
T ss_dssp             TT--EEEEEEECSSCC----BSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred             CC--eEEECCCCCCCc----ccc-eEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--
Confidence            52  222222221111    111 22222  45677777765     4589999877643  2222221222233333  


Q ss_pred             CCcEEEEeeccC-----CeEEEEecccce
Q 022019          276 DGNYLYTGGRKD-----PYILCWDLRKAV  299 (304)
Q Consensus       276 ~~~~l~~~~~~d-----~~i~vwd~~~~~  299 (304)
                      ++..++.|+ .+     ..+.+||+.+.+
T Consensus       206 ~~~i~v~GG-~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          206 NDHIYVVGG-FDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             TTEEEEECC-BCSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEEeC-CCCCcccceEEEEeCCCCc
Confidence            567777777 43     468899987764

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.02  E-value=0.048  Score=45.92  Aligned_cols=108  Identities=10%  Similarity=0.046  Sum_probs=67.9

Q ss_pred             ceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCccce-----eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeE
Q 022019          175 AAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFE-----KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTS  247 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i  247 (304)
                      ....+..+|||+++++ | .+.++.++|++.....+.     .-..+..... -.-.....+|.+ .+..+.+-.-|..|
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv  401 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV  401 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence            4567899999999995 5 899999999974211000     0011111111 122356789999 66666666789999


Q ss_pred             EEEecCCc----------eEeEEeccccCCeEEEE-----ECCCCcEEEEee
Q 022019          248 AIYREDNM----------ELLYVLHGQEGGVTHVQ-----FSRDGNYLYTGG  284 (304)
Q Consensus       248 ~i~d~~~~----------~~~~~~~~~~~~v~~~~-----~~~~~~~l~~~~  284 (304)
                      .-|++...          ..+..+..|-.+-.-.+     -.|||+||++..
T Consensus       402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            99998653          35566665544322221     257888888876

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.94  E-value=0.25  Score=38.43  Aligned_cols=146  Identities=8%  Similarity=0.106  Sum_probs=75.0

Q ss_pred             CccEEEEEeCC----CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcC------CeEEEEEcCCCC
Q 022019          137 TSCVFASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN------KSVRVFDVHRPG  205 (304)
Q Consensus       137 ~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d------~~i~v~d~~~~~  205 (304)
                      ++.+++.|+.+    ..+.+||+.+.+....-......   .....+.+  ++++++. |.+      ..+.+||..+. 
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~-  128 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR---DSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTE-  128 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC---BSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTT-
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc---cceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCC-
Confidence            56677777754    56889999887654432222111   01122232  4555554 443      45889998763 


Q ss_pred             ccceeeeeeeccccccccceeEEEeecCCCcEEEEEec---------CCeEEEEecCCceE--eEEeccccCCeEEEEEC
Q 022019          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---------SQTSAIYREDNMEL--LYVLHGQEGGVTHVQFS  274 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---------dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~  274 (304)
                       .......+..   . .... +++..  ++.+++.|+.         -..+.+||+.+.+-  +..+......-..+.+ 
T Consensus       129 -~W~~~~~~p~---~-r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-  199 (306)
T 3ii7_A          129 -SWHTKPSMLT---Q-RCSH-GMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-  199 (306)
T ss_dssp             -EEEEECCCSS---C-CBSC-EEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred             -ceEeCCCCcC---C-ccee-EEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-
Confidence             2222211111   1 1111 22222  4567777764         34588999887642  2222211122223333 


Q ss_pred             CCCcEEEEeeccC-----CeEEEEecccce
Q 022019          275 RDGNYLYTGGRKD-----PYILCWDLRKAV  299 (304)
Q Consensus       275 ~~~~~l~~~~~~d-----~~i~vwd~~~~~  299 (304)
                       +++.++.|| .+     ..+.+||+.+.+
T Consensus       200 -~~~i~v~GG-~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          200 -KDKIFAVGG-QNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             -TTEEEEECC-EETTEEBCCEEEEETTTTE
T ss_pred             -CCEEEEEeC-CCCCCCCceEEEeeCCCCc
Confidence             567777776 43     358888887754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.93  E-value=0.012  Score=46.54  Aligned_cols=198  Identities=12%  Similarity=0.104  Sum_probs=94.7

Q ss_pred             CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEE-eCCCCEE
Q 022019           73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST-TRDHPIH  151 (304)
Q Consensus        73 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~  151 (304)
                      ..++.++.||.|.-.|..+++..........                .++..... +   +...++..++.. ..||.|+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~----------------~p~~~~~~-~---~~~~~~~~~vv~p~~dG~l~   70 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENF----------------QPLIEIQE-P---SRLETYETLIIEPFGDGNIY   70 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGS----------------CCSEECCC-S---CTTTSSEEEEECCSTTTEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCcc----------------CCcEEecC-C---ccccCCcEEEEEECCCCEEE
Confidence            3677788899999999888766544432200                01111000 0   001133444444 5899999


Q ss_pred             EEEcCCCeeeEEeecccccccccceEE---EEE------CCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccccccc
Q 022019          152 LWDATTGLLRCTYRAYDAVDEITAAFS---VAF------NPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA  222 (304)
Q Consensus       152 i~d~~~~~~~~~~~~~~~~~~~~~v~~---i~~------~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  222 (304)
                      .++..+|.....+...... ...++..   ...      +.++..++.+.++.+...|++++....    ....  ....
T Consensus        71 a~~~~~G~~~~~~~~~~lv-~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W----~~~~--~~~~  143 (339)
T 2be1_A           71 YFNAHQGLQKLPLSIRQLV-STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS----AFGP--GSKN  143 (339)
T ss_dssp             EEETTTEEEEEEEEHHHHH-TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE----EEST--TCBC
T ss_pred             EEECCCCcEEeeeccccce-eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE----EEec--CCCc
Confidence            9999888655444433211 1111111   001      133444445599999999998863222    1111  0000


Q ss_pred             cc-----eeEEE---eec-CCCcEEEEEecCCeEEEEecCCceEeEEec-----cccCC--e-EEEEECCCCcEEEEeec
Q 022019          223 GI-----MSAIA---FSP-THTGMLAIGSYSQTSAIYREDNMELLYVLH-----GQEGG--V-THVQFSRDGNYLYTGGR  285 (304)
Q Consensus       223 ~~-----v~~~~---~~p-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~--v-~~~~~~~~~~~l~~~~~  285 (304)
                      ..     ..|..   +.. ..+..++.+..+..+.+.+ ++++ +..+.     .....  + ..-..+.|+.+++ ++ 
T Consensus       144 ~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~-~~-  219 (339)
T 2be1_A          144 GYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIA-PF-  219 (339)
T ss_dssp             C--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEE-EE-
T ss_pred             ccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEE-EC-
Confidence            00     00111   100 1234677777777777766 4443 21111     00000  0 0001123466644 56 


Q ss_pred             cCCeEEEEecccceee
Q 022019          286 KDPYILCWDLRKAVQV  301 (304)
Q Consensus       286 ~d~~i~vwd~~~~~~~  301 (304)
                      .||.|..+|..+|+.+
T Consensus       220 ~dg~v~A~d~~~G~~~  235 (339)
T 2be1_A          220 RDKSLLASDLDFRIAR  235 (339)
T ss_dssp             TTTEEEEECSTTCCEE
T ss_pred             CCCEEEEEECCCCcEE
Confidence            7888888888887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.80  E-value=0.32  Score=37.69  Aligned_cols=146  Identities=14%  Similarity=0.243  Sum_probs=74.4

Q ss_pred             CccEEEEEeCC-----CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcC-----CeEEEEEcCCCC
Q 022019          137 TSCVFASTTRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-----KSVRVFDVHRPG  205 (304)
Q Consensus       137 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d-----~~i~v~d~~~~~  205 (304)
                      ++.+++.|+.+     ..+.+||..+.+....-......   .....+.+  ++..++ .|.+     ..+.+||+.+. 
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r---~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~-  134 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRR---STLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSN-  134 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCC---BSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTT-
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccc---cceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCC-
Confidence            56677777654     35889999887654332221110   01122222  455555 4443     25778888652 


Q ss_pred             ccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC-------CeEEEEecCCceE--eEEeccccCCeEEEEECCC
Q 022019          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-------QTSAIYREDNMEL--LYVLHGQEGGVTHVQFSRD  276 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-------g~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~  276 (304)
                       .......+.   . ..... +++..  ++.+++.|+.+       ..+.+||+.+.+-  +..+.........+.+  +
T Consensus       135 -~W~~~~~~p---~-~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~  204 (302)
T 2xn4_A          135 -EWFHVAPMN---T-RRSSV-GVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--N  204 (302)
T ss_dssp             -EEEEECCCS---S-CCBSC-EEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T
T ss_pred             -eEeecCCCC---C-cccCc-eEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--C
Confidence             222222111   1 11111 22222  45677777653       3588999887642  2222222222233333  5


Q ss_pred             CcEEEEeeccC-----CeEEEEecccce
Q 022019          277 GNYLYTGGRKD-----PYILCWDLRKAV  299 (304)
Q Consensus       277 ~~~l~~~~~~d-----~~i~vwd~~~~~  299 (304)
                      +..++.|| .+     ..+.+||+.+.+
T Consensus       205 ~~iyv~GG-~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          205 NLLYAVGG-HDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             TEEEEECC-BSSSSBCCCEEEEETTTTE
T ss_pred             CEEEEECC-CCCCcccceEEEEeCCCCC
Confidence            67777777 44     368889987754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.68  E-value=0.57  Score=39.01  Aligned_cols=109  Identities=12%  Similarity=0.121  Sum_probs=62.0

Q ss_pred             ceEEEEECCCCc--EEEEEcCCeEEEEEcCCCCccceeeeeeecccc-----ccccceeEEEeecC---CCcEEEEEecC
Q 022019          175 AAFSVAFNPTGT--KIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE-----GQAGIMSAIAFSPT---HTGMLAIGSYS  244 (304)
Q Consensus       175 ~v~~i~~~~~~~--~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~p~---~~~~l~~~~~d  244 (304)
                      ..+.|+|.|++.  ++++...|.|++++.... .....+..+.....     .....+..|+|+|+   ++.++++-+.+
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~-~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGE-IFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSC-BCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCC-eeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            567999999985  666778999999975321 11111111111111     12345789999994   24455554432


Q ss_pred             ------------CeEEEEecCC----------ceEeEEec--cccCCeEEEEECCCCcEEEEee
Q 022019          245 ------------QTSAIYREDN----------MELLYVLH--GQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       245 ------------g~i~i~d~~~----------~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                                  ..|.-|.+..          .+.+..+.  ........|.|.|||.+.++.+
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G  157 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG  157 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence                        1344454431          23333332  2223568899999998777766

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.66  E-value=0.63  Score=37.04  Aligned_cols=112  Identities=10%  Similarity=0.040  Sum_probs=59.0

Q ss_pred             ceEEEEECCCCcEEEE--EcCCeEEEEEcCCCCcc---ce-------eeeeeeccccccccceeEEEeecCCCcEEEEEe
Q 022019          175 AAFSVAFNPTGTKIFA--GYNKSVRVFDVHRPGRD---FE-------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS  242 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~--~~d~~i~v~d~~~~~~~---~~-------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  242 (304)
                      ....++|+|+|.++++  +.++.=.|--+..+..-   ..       .+.........+......++|..  +.++...-
T Consensus       203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l  280 (347)
T 3das_A          203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGL  280 (347)
T ss_dssp             BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEES
T ss_pred             CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeeccc
Confidence            4568999998887774  34443344333332110   00       00000000011112355677764  44555555


Q ss_pred             cCCeEEEEecCCceE----eEEeccccCCeEEEEECCCCcEEEEeeccCC
Q 022019          243 YSQTSAIYREDNMEL----LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDP  288 (304)
Q Consensus       243 ~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~  288 (304)
                      ..+.|....+.....    ...+.+....+..+...|||.+.++..+.||
T Consensus       281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td~~~g  330 (347)
T 3das_A          281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTSNTDG  330 (347)
T ss_dssp             TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEECTTSS
T ss_pred             cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEcCCCC
Confidence            556676666655432    2234444567999999999987666553454

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.62  E-value=0.14  Score=40.61  Aligned_cols=117  Identities=10%  Similarity=0.046  Sum_probs=68.3

Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEE---CCCCcEEEE--EcCCeEEEEEcCCCCccceeeee
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF---NPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~---~~~~~~l~~--~~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      .++++++.||.|+-+|..+|+....+.....    .++....-   ..++..++.  ..||.++.++...+...    ..
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~----~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~----~~   82 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENF----QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK----LP   82 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGS----CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE----EE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCcc----CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE----ee
Confidence            3688899999999999999999888765410    01111110   013344444  37899999997653111    11


Q ss_pred             eeccccccccceeE---EEe-ec---CCCcEEEEEecCCeEEEEecCCceEeEEecc
Q 022019          214 LKGNKEGQAGIMSA---IAF-SP---THTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (304)
Q Consensus       214 ~~~~~~~~~~~v~~---~~~-~p---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  263 (304)
                      ......-...++..   ... .+   ..+..+++|+.+|.+...|+++|+.+.++..
T Consensus        83 ~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           83 LSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             EEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             eccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            11000001111111   000 00   0234788999999999999999999988873

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.44  E-value=1.3  Score=39.15  Aligned_cols=154  Identities=14%  Similarity=0.148  Sum_probs=79.8

Q ss_pred             CccEEEEEeCC------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCC--eEEEEEcCCCCcc
Q 022019          137 TSCVFASTTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNK--SVRVFDVHRPGRD  207 (304)
Q Consensus       137 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~--~i~v~d~~~~~~~  207 (304)
                      ++.+++.|+.+      ..+.+||..+.+....-.....    ..-.++..-.+++.++. |.++  .+.+||..+.  .
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~----R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~--~  524 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT----RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE--I  524 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC----CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT--E
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC----cccceEEEEcCCEEEEECCCCCCCCEEEEECCCC--c
Confidence            56677777654      3578999988654433211111    11123333236666664 4332  7899998762  2


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEec--C-----CeEEEEecCCce--------EeEEec-cccCCeEEE
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--S-----QTSAIYREDNME--------LLYVLH-GQEGGVTHV  271 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--d-----g~i~i~d~~~~~--------~~~~~~-~~~~~v~~~  271 (304)
                      +...... ...........++.+....+.+++.|+.  +     +.+.+||+.+..        .+.... ........+
T Consensus       525 W~~~~~~-g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~  603 (695)
T 2zwa_A          525 FKDVTPK-DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK  603 (695)
T ss_dssp             EEECCCS-SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE
T ss_pred             eEEccCC-CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE
Confidence            2211110 0011111223345666633778888876  2     458999988765        122211 111122233


Q ss_pred             EECCCCcEEEEeecc--------CCeEEEEecccce
Q 022019          272 QFSRDGNYLYTGGRK--------DPYILCWDLRKAV  299 (304)
Q Consensus       272 ~~~~~~~~l~~~~~~--------d~~i~vwd~~~~~  299 (304)
                      .+ .++..++.|| .        ...+.+||+.+.+
T Consensus       604 ~~-~~~~iyv~GG-~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          604 YI-TPRKLLIVGG-TSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EE-ETTEEEEECC-BCSSCCCCTTTSEEEEETTTTE
T ss_pred             Ee-CCCEEEEECC-ccCCCCCCCCCeEEEEECCCCe
Confidence            33 3367777777 3        3458899988754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.23  E-value=0.53  Score=36.61  Aligned_cols=146  Identities=12%  Similarity=0.167  Sum_probs=74.5

Q ss_pred             CccEEEEEeC----C-----CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC-----CeEEEEEc
Q 022019          137 TSCVFASTTR----D-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-----KSVRVFDV  201 (304)
Q Consensus       137 ~~~~l~~~~~----d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d-----~~i~v~d~  201 (304)
                      ++.+++.|+.    +     ..+.+||+.+.+....-.....   ......+.+  +++.++.| .+     ..+.+||+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~  144 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP---RNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEP  144 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC---CBTCEEEEE--TTEEEEECCEETTEECCCEEEEET
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC---ccccEEEEE--CCEEEEEcCCCCCcccccEEEECC
Confidence            4556666665    2     4688999987764432221111   111222333  45555543 22     46888998


Q ss_pred             CCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC-----CeEEEEecCCceE--eEEeccccCCeEEEEEC
Q 022019          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMEL--LYVLHGQEGGVTHVQFS  274 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~  274 (304)
                      .+.  .......+..   . ......+.+   ++.+++.|+.+     ..+.+||+.+.+-  +..+.........+.+ 
T Consensus       145 ~~~--~W~~~~~~p~---~-r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-  214 (308)
T 1zgk_A          145 ERD--EWHLVAPMLT---R-RIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-  214 (308)
T ss_dssp             TTT--EEEECCCCSS---C-CBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-
T ss_pred             CCC--eEeECCCCCc---c-ccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-
Confidence            752  2222211111   1 111122222   45677777764     4589999876642  2222222222233333 


Q ss_pred             CCCcEEEEeeccC-----CeEEEEecccce
Q 022019          275 RDGNYLYTGGRKD-----PYILCWDLRKAV  299 (304)
Q Consensus       275 ~~~~~l~~~~~~d-----~~i~vwd~~~~~  299 (304)
                       ++..++.|| .+     ..+.+||+.+.+
T Consensus       215 -~~~iyv~GG-~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          215 -HNCIYAAGG-YDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             -TTEEEEECC-BCSSSBCCCEEEEETTTTE
T ss_pred             -CCEEEEEeC-CCCCCccceEEEEeCCCCc
Confidence             567777777 44     568899987754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.22  E-value=0.59  Score=36.43  Aligned_cols=139  Identities=6%  Similarity=0.021  Sum_probs=73.3

Q ss_pred             CCCccEEEEEeCC--------------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE--cCCeEE
Q 022019          135 DPTSCVFASTTRD--------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVR  197 (304)
Q Consensus       135 ~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~--~d~~i~  197 (304)
                      ++++.+|.-+...              ..|+..++..++... +...         .+..|+++++.|+ +.  .++.-.
T Consensus        61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~---------~~~~~s~~g~~Iy~~~~~~~~~~~  130 (302)
T 3s25_A           61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD---------PCIYASLIGNYIYYLHYDTQTATS  130 (302)
T ss_dssp             EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS---------CEEEEEEETTEEEEEEESSSSCEE
T ss_pred             EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC---------CccEEEEeCCEEEEEeecCCCCce
Confidence            4566666666442              457777777654332 2211         1346778888888 44  244444


Q ss_pred             EEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCC
Q 022019          198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDG  277 (304)
Q Consensus       198 v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  277 (304)
                      ||-+...+...+   .+..    +.  +  ..|+|+++.++.+......|...++..+.....+.+   ... ..++|++
T Consensus       131 Iy~~~~dGs~~~---~lt~----~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g  195 (302)
T 3s25_A          131 LYRIRIDGEEKK---KIKN----HY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDD  195 (302)
T ss_dssp             EEEEETTSCCCE---EEES----SC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEET
T ss_pred             EEEEECCCCCeE---EEeC----CC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecC
Confidence            444433332222   1211    11  1  346775565555554467788888876654433332   222 2355888


Q ss_pred             cEEEEeeccC-CeEEEEecccc
Q 022019          278 NYLYTGGRKD-PYILCWDLRKA  298 (304)
Q Consensus       278 ~~l~~~~~~d-~~i~vwd~~~~  298 (304)
                      .+|+-....+ ..|..-++..+
T Consensus       196 ~~iy~t~~~~~~~I~~~~ldG~  217 (302)
T 3s25_A          196 TNVYYMDVNRDNAIVHVNINNP  217 (302)
T ss_dssp             TEEEEEEGGGTTEEEEECSSSC
T ss_pred             CEEEEEEcCCCcEEEEEECCCC
Confidence            8887665222 35555555443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.87  E-value=1.1  Score=35.08  Aligned_cols=146  Identities=12%  Similarity=0.198  Sum_probs=73.4

Q ss_pred             CccEEEEEeCC-------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-c------CCeEEEEEcC
Q 022019          137 TSCVFASTTRD-------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y------NKSVRVFDVH  202 (304)
Q Consensus       137 ~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~------d~~i~v~d~~  202 (304)
                      ++.+++.|+.+       ..+.+||+.+.+....-.......   . .++.. .++++++.| .      -..+.+||+.
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~---~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~  183 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVY---G-HNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPK  183 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEE---S-CEEEE-ETTEEEEECCEESSSCBCCCEEEEETT
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccc---c-cEEEE-ECCEEEEEcCCCCCCCccceEEEEcCC
Confidence            55677777653       247889988776544322211100   1 12222 345555543 2      2358899987


Q ss_pred             CCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC-----CeEEEEecCCce--EeEEeccccCCeEEEEECC
Q 022019          203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNME--LLYVLHGQEGGVTHVQFSR  275 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~  275 (304)
                      +.  .......+..   . .... +++..  ++.+++.|+.+     ..+.+||+.+.+  .+..+.........+.+  
T Consensus       184 ~~--~W~~~~~~p~---~-r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--  252 (318)
T 2woz_A          184 KG--DWKDLAPMKT---P-RSMF-GVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--  252 (318)
T ss_dssp             TT--EEEEECCCSS---C-CBSC-EEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--
T ss_pred             CC--EEEECCCCCC---C-cccc-eEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--
Confidence            62  2222211111   1 1111 22222  45677777654     357789987654  33223222222233333  


Q ss_pred             CCcEEEEeeccC--------------CeEEEEecccce
Q 022019          276 DGNYLYTGGRKD--------------PYILCWDLRKAV  299 (304)
Q Consensus       276 ~~~~l~~~~~~d--------------~~i~vwd~~~~~  299 (304)
                      +++.++.|| .+              ..+.+||+.+.+
T Consensus       253 ~~~i~v~GG-~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          253 AGSLYAIGG-FAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             TTEEEEECC-BCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             CCEEEEECC-eeccCCCCceeccceeeeEEEEeCCCCE
Confidence            567777776 43              357888887653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.74  E-value=1.1  Score=34.84  Aligned_cols=147  Identities=12%  Similarity=0.018  Sum_probs=73.5

Q ss_pred             CCccEEEEEeC-----C------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC--------Ce
Q 022019          136 PTSCVFASTTR-----D------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN--------KS  195 (304)
Q Consensus       136 ~~~~~l~~~~~-----d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d--------~~  195 (304)
                      .++.+++.|+.     .      ..+..||..+.+....-..... ..  ....+.+  +++.++.| .+        ..
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~--~~~~~~~--~~~lyv~GG~~~~~~~~~~~~  118 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSP-RC--LFGLGEA--LNSIYVVGGREIKDGERCLDS  118 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSC-EE--SCEEEEE--TTEEEEECCEESSTTCCBCCC
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcc-hh--ceeEEEE--CCEEEEEeCCcCCCCCcccce
Confidence            36677777773     1      1277889887765332111111 00  1112222  45555543 21        45


Q ss_pred             EEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec-C-----CeEEEEecCCce--EeEEeccccCC
Q 022019          196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-S-----QTSAIYREDNME--LLYVLHGQEGG  267 (304)
Q Consensus       196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d-----g~i~i~d~~~~~--~~~~~~~~~~~  267 (304)
                      +.+||..+.  .......+...    .... +++..  ++.+++.|+. +     ..+.+||+.+.+  .+..+......
T Consensus       119 ~~~~d~~~~--~W~~~~~~p~~----r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~  189 (315)
T 4asc_A          119 VMCYDRLSF--KWGESDPLPYV----VYGH-TVLSH--MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL  189 (315)
T ss_dssp             EEEEETTTT--EEEECCCCSSC----CBSC-EEEEE--TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred             EEEECCCCC--cEeECCCCCCc----ccce-eEEEE--CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhc
Confidence            889998763  22222211111    1111 22222  5567777776 2     468999988764  22222221222


Q ss_pred             eEEEEECCCCcEEEEeeccCC-----eEEEEecccce
Q 022019          268 VTHVQFSRDGNYLYTGGRKDP-----YILCWDLRKAV  299 (304)
Q Consensus       268 v~~~~~~~~~~~l~~~~~~d~-----~i~vwd~~~~~  299 (304)
                      ...+.+  +++.++.|| .++     .+.+||+.+.+
T Consensus       190 ~~~~~~--~~~iyv~GG-~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          190 FGATVH--DGRIIVAAG-VTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             CEEEEE--TTEEEEEEE-ECSSSEEEEEEEEETTTTE
T ss_pred             eEEEEE--CCEEEEEec-cCCCCccceEEEEECCCCe
Confidence            233333  567777777 443     57888887653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.45  E-value=1.3  Score=34.59  Aligned_cols=147  Identities=13%  Similarity=0.105  Sum_probs=71.4

Q ss_pred             CCccEEEEEeC----CC-------CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcC-------CeE
Q 022019          136 PTSCVFASTTR----DH-------PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN-------KSV  196 (304)
Q Consensus       136 ~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d-------~~i  196 (304)
                      .++.+++.|+.    ++       .+..||..+.+....-..... .  .....+.+  +++.++ .|.+       ..+
T Consensus        55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r--~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  129 (318)
T 2woz_A           55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA-R--CLFGLGEV--DDKIYVVAGKDLQTEASLDSV  129 (318)
T ss_dssp             SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC-B--CSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred             ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc-c--cccceEEE--CCEEEEEcCccCCCCcccceE
Confidence            36677777773    12       177889887765432111111 1  01122222  455555 4432       347


Q ss_pred             EEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec------CCeEEEEecCCceE--eEEeccccCCe
Q 022019          197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMEL--LYVLHGQEGGV  268 (304)
Q Consensus       197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~--~~~~~~~~~~v  268 (304)
                      .+||+.+.  .......+.....+|     +++. . ++.+++.|+.      -..+.+||+.+.+-  +..+.......
T Consensus       130 ~~yd~~~~--~W~~~~~~p~~r~~~-----~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~  200 (318)
T 2woz_A          130 LCYDPVAA--KWSEVKNLPIKVYGH-----NVIS-H-NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMF  200 (318)
T ss_dssp             EEEETTTT--EEEEECCCSSCEESC-----EEEE-E-TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred             EEEeCCCC--CEeECCCCCCccccc-----EEEE-E-CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccc
Confidence            88888652  222222111111111     2222 2 5667777764      23589999987642  22222111222


Q ss_pred             EEEEECCCCcEEEEeeccC-----CeEEEEecccce
Q 022019          269 THVQFSRDGNYLYTGGRKD-----PYILCWDLRKAV  299 (304)
Q Consensus       269 ~~~~~~~~~~~l~~~~~~d-----~~i~vwd~~~~~  299 (304)
                      ..+.+  +++.++.|| .+     ..+.+||+.+.+
T Consensus       201 ~~~~~--~~~iyv~GG-~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          201 GVAIH--KGKIVIAGG-VTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EEEEE--TTEEEEEEE-EETTEEEEEEEEEETTTCC
T ss_pred             eEEEE--CCEEEEEcC-cCCCCccceEEEEECCCCe
Confidence            23333  567777776 33     346788887653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.43  E-value=5.7  Score=38.11  Aligned_cols=155  Identities=11%  Similarity=0.063  Sum_probs=83.6

Q ss_pred             CCCccEEEEEe-------CCCCEEEEEcCCCeeeEEeecccccccccceEEEEEC--CC-CcEEEEE----cCCeEEEEE
Q 022019          135 DPTSCVFASTT-------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN--PT-GTKIFAG----YNKSVRVFD  200 (304)
Q Consensus       135 ~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~-~~~l~~~----~d~~i~v~d  200 (304)
                      +++.++++..+       -.|.+.+|+.+.+. .+.+.+|..     ....+...  +. ...++-+    ..+.++|.+
T Consensus       159 d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~-----~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~E  232 (1630)
T 1xi4_A          159 DAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAA-----SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE  232 (1630)
T ss_pred             CCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHh-----hhheeccCCCCCCceEEEEEEecCCCceEEEEe
Confidence            55666655443       24788999886542 233444332     11122221  11 1233312    237889988


Q ss_pred             cCCC--C-ccce-eeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCC
Q 022019          201 VHRP--G-RDFE-KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRD  276 (304)
Q Consensus       201 ~~~~--~-~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  276 (304)
                      +..+  + ..+. ....+........+-..++..++ .-.++..-+.-|.|++||+.++.++..-+-...+|...+-++.
T Consensus       233 i~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~  311 (1630)
T 1xi4_A          233 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA  311 (1630)
T ss_pred             cCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCC
Confidence            8653  1 1111 00111111122234456788888 4457888899999999999999987766655555555554444


Q ss_pred             CcEEEEeeccCCeEEEEeccc
Q 022019          277 GNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       277 ~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      ..-++... ..|.|.--.+..
T Consensus       312 ~~g~~~vn-r~G~vl~v~v~~  331 (1630)
T 1xi4_A          312 TAGIIGVN-RKGQVLSVCVEE  331 (1630)
T ss_pred             CCceEEEc-CCceEEEEEEcc
Confidence            33344455 566665555544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.14  E-value=5.8  Score=37.35  Aligned_cols=150  Identities=13%  Similarity=0.180  Sum_probs=86.9

Q ss_pred             eeCCCccEEEEEeC-C--------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCC
Q 022019          133 ASDPTSCVFASTTR-D--------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR  203 (304)
Q Consensus       133 ~~~~~~~~l~~~~~-d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~  203 (304)
                      .|..+...|+++.- +        ..|++.+...+.....+.....    ..|...+.+.  ..++.+.++.+.++.+..
T Consensus       468 gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~----~~I~~As~n~--~~vvva~g~~l~~fel~~  541 (1158)
T 3ei3_A          468 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQA----KNISVASCNS--SQVVVAVGRALYYLQIHP  541 (1158)
T ss_dssp             TCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTC----CCCCEEEECS--SEEEEEETTEEEEEEEET
T ss_pred             cccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCC----CEEEEEEeCC--CEEEEEECCEEEEEEeeC
Confidence            34455566666643 1        2356666554444545543322    1455666553  355544567888888764


Q ss_pred             CCccceeeeeeeccccccccceeEEEeecCC-----CcEEEEEec-CCeEEEEecCCceEeEEecc-ccCCeEEEEEC--
Q 022019          204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-----TGMLAIGSY-SQTSAIYREDNMELLYVLHG-QEGGVTHVQFS--  274 (304)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~--  274 (304)
                      +  .......     ......|.|+++.|..     +.++++|.. |++|+|+++...+.+....- ......++.+.  
T Consensus       542 ~--~L~~~~~-----~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~  614 (1158)
T 3ei3_A          542 Q--ELRQISH-----TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF  614 (1158)
T ss_dssp             T--EEEEEEE-----EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE
T ss_pred             C--ceeeecc-----cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe
Confidence            2  1222111     1123458999998632     468999996 99999999987766544321 11233343332  


Q ss_pred             CCCcEEEEeeccCCeEEEEecc
Q 022019          275 RDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       275 ~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      ....+|..|- .||.+.-+.+.
T Consensus       615 ~~~~~L~igl-~dG~l~~~~~d  635 (1158)
T 3ei3_A          615 ESSHYLLCAL-GDGALFYFGLN  635 (1158)
T ss_dssp             TTEEEEEEEE-TTSEEEEEEEC
T ss_pred             CCCcEEEEEe-CCCeEEEEEEc
Confidence            2346788887 89988766654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.09  E-value=2  Score=34.07  Aligned_cols=26  Identities=8%  Similarity=0.107  Sum_probs=17.3

Q ss_pred             CccEEEEEeC-C---------CCEEEEEcCCCeeeE
Q 022019          137 TSCVFASTTR-D---------HPIHLWDATTGLLRC  162 (304)
Q Consensus       137 ~~~~l~~~~~-d---------g~i~i~d~~~~~~~~  162 (304)
                      ++.+++.|+. +         ..+.+||+.+.+...
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~  100 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVK  100 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEE
Confidence            4556666665 2         468999998876443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.60  E-value=1.5  Score=36.42  Aligned_cols=112  Identities=11%  Similarity=0.121  Sum_probs=55.6

Q ss_pred             CccceeCCCcc-EEEEEeCCCCEEEEEcCCCe---eeEEeeccccc----ccccceEEEEECCC---CcEEEE--E--cC
Q 022019          129 PHMSASDPTSC-VFASTTRDHPIHLWDATTGL---LRCTYRAYDAV----DEITAAFSVAFNPT---GTKIFA--G--YN  193 (304)
Q Consensus       129 ~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~----~~~~~v~~i~~~~~---~~~l~~--~--~d  193 (304)
                      |..+++.|++. .|+++...|.|++++.....   .+..+...-..    ........|+|+|+   +..|++  +  .+
T Consensus        16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~   95 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE   95 (463)
T ss_dssp             EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred             ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence            44455678885 45566788999999754221   11111110000    01236789999996   233332  2  12


Q ss_pred             ----------CeEEEEEcCCCC-c-----cceeeeeeeccccccccceeEEEeecCCCcEEEEEec
Q 022019          194 ----------KSVRVFDVHRPG-R-----DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY  243 (304)
Q Consensus       194 ----------~~i~v~d~~~~~-~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  243 (304)
                                ..|.-|.+.... .     ..+.+.........|.  ...|+|.| ++.++++.+.
T Consensus        96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgp-DG~LYv~~Gd  158 (463)
T 2wg3_C           96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGP-DGFLYIILGD  158 (463)
T ss_dssp             SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECT-TSCEEEEECC
T ss_pred             CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECC-CCcEEEEeCC
Confidence                      145556664321 1     1122222221223343  57899999 5555555443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.11  E-value=5.9  Score=34.94  Aligned_cols=154  Identities=10%  Similarity=0.100  Sum_probs=80.0

Q ss_pred             CccEEEEEeCC----CCEEEEEcCCCeeeEEe-ecc--cccccccceEEEEECCCCcEEEE-EcC------CeEEEEEcC
Q 022019          137 TSCVFASTTRD----HPIHLWDATTGLLRCTY-RAY--DAVDEITAAFSVAFNPTGTKIFA-GYN------KSVRVFDVH  202 (304)
Q Consensus       137 ~~~~l~~~~~d----g~i~i~d~~~~~~~~~~-~~~--~~~~~~~~v~~i~~~~~~~~l~~-~~d------~~i~v~d~~  202 (304)
                      ++.+++.|+.+    ..+.+||..+++....- ...  ...........+.+..+++.++. |.+      ..+.+||..
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~  476 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK  476 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence            56677777753    46889999887654432 200  00011112223333325666664 432      357888887


Q ss_pred             CCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC--eEEEEecCCceEeEE-----eccccCCeEEEEECC
Q 022019          203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYV-----LHGQEGGVTHVQFSR  275 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~-----~~~~~~~v~~~~~~~  275 (304)
                      +.  .+.....+..    ..... +++.-. ++.+++.|+.++  .+.+||..+.+-...     +.........+.+..
T Consensus       477 t~--~W~~~~~~p~----~R~~h-~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~  548 (695)
T 2zwa_A          477 TR--EWSMIKSLSH----TRFRH-SACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDP  548 (695)
T ss_dssp             TT--EEEECCCCSB----CCBSC-EEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEET
T ss_pred             CC--cEEECCCCCC----Ccccc-eEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeC
Confidence            62  2222211111    11112 222223 566888887755  699999987653221     111122233455555


Q ss_pred             C-CcEEEEeecc--C-----CeEEEEecccce
Q 022019          276 D-GNYLYTGGRK--D-----PYILCWDLRKAV  299 (304)
Q Consensus       276 ~-~~~l~~~~~~--d-----~~i~vwd~~~~~  299 (304)
                      + ++.++.|| .  +     +.+.+||+.+.+
T Consensus       549 ~~~~iyv~GG-~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          549 VSKQGIILGG-GFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TTTEEEEECC-BCTTSSCBCCEEEEEEECTTC
T ss_pred             CCCEEEEECC-cCCCCCeeeCcEEEEEccCCc
Confidence            5 66777777 4  2     468899987765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.09  E-value=0.18  Score=42.59  Aligned_cols=118  Identities=11%  Similarity=0.101  Sum_probs=64.6

Q ss_pred             CceeEEEEcCCCCeEEEec-CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           61 NFLKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      ....++..+|||++++.++ .+.++.++|+............     ...........       +-.-|.+.+|+++|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~-----~~~~~~~ae~e-------~GlGPlHt~Fd~~G~  390 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLA-----DPRDVIVGEPE-------LGLGPLHTTFDGRGN  390 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCS-----CGGGGEEECCB-------CCSCEEEEEECSSSE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcccc-----CcccceEeecc-------CCCcccEEEECCCCc
Confidence            4456899999999887765 5889999998732110000000     00000000011       222344456688886


Q ss_pred             EEEEEeCCCCEEEEEcCCC----------eeeEEeecccccccccceEEEEECCCCcEEEE
Q 022019          140 VFASTTRDHPIHLWDATTG----------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA  190 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~  190 (304)
                      -..+.--|..|.-|++...          ..+..+..+-..+|.....+=.-.|+|++|++
T Consensus       391 aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~  451 (638)
T 3sbq_A          391 AYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVA  451 (638)
T ss_dssp             EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEE
T ss_pred             eEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEE
Confidence            6677778999999999642          34445555543332211111122567777774

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=90.74  E-value=5.6  Score=32.05  Aligned_cols=146  Identities=12%  Similarity=0.134  Sum_probs=80.5

Q ss_pred             CEEEEEcCCC--eeeEEeecccc-cccccceEEEEEC---CC----CcEEEEE--cCCeEEEEEcCCCCccceeeeeeec
Q 022019          149 PIHLWDATTG--LLRCTYRAYDA-VDEITAAFSVAFN---PT----GTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKG  216 (304)
Q Consensus       149 ~i~i~d~~~~--~~~~~~~~~~~-~~~~~~v~~i~~~---~~----~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~  216 (304)
                      +|.+||+.++  +.++.+..... ....+.+..+.++   |.    +.+++.+  ....|.|+|+.++. ..+.......
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~-swRv~~~~~~  202 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQD-SWNVTHPTFK  202 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTE-EEEEECGGGS
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCc-EEEEccCCCc
Confidence            5889999999  88888877533 2233467888887   32    3455544  67899999998742 2111110000


Q ss_pred             c-------cccc----ccceeEEEeecCC---CcEEEEEecCC-eEEEEe---cCCce---EeEEecccc---CCeEEEE
Q 022019          217 N-------KEGQ----AGIMSAIAFSPTH---TGMLAIGSYSQ-TSAIYR---EDNME---LLYVLHGQE---GGVTHVQ  272 (304)
Q Consensus       217 ~-------~~~~----~~~v~~~~~~p~~---~~~l~~~~~dg-~i~i~d---~~~~~---~~~~~~~~~---~~v~~~~  272 (304)
                      .       ..+.    ...+..++++|+.   ++.|.-....+ .++-..   +++..   .+..+ +..   ..-..++
T Consensus       203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~  281 (381)
T 3q6k_A          203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA  281 (381)
T ss_dssp             CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred             cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence            0       0011    2357788898851   33343333322 333332   12211   11111 222   2334567


Q ss_pred             EC-CCCcEEEEeeccCCeEEEEeccc
Q 022019          273 FS-RDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       273 ~~-~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      .. .+|...++-- ..+.|..|+..+
T Consensus       282 ~D~~~G~ly~~~~-~~~aI~~w~~~~  306 (381)
T 3q6k_A          282 YDPKTKVIFFAEA-NTKQVSCWNTQK  306 (381)
T ss_dssp             ECTTTCEEEEEES-SSSEEEEEETTS
T ss_pred             EeCCCCeEEEEec-cCCeEEEEeCCC
Confidence            75 5676666665 888999999875

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.28  E-value=5.3  Score=31.02  Aligned_cols=134  Identities=8%  Similarity=0.119  Sum_probs=68.9

Q ss_pred             CCCccEEEEEeC-CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cC-CeEEEEEcCCCCcccee
Q 022019          135 DPTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN-KSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       135 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d-~~i~v~d~~~~~~~~~~  210 (304)
                      +++++.|.-.+. ...|...++..+.....+..        .. ...++|++..|+ +. .+ ..|..-++....  .  
T Consensus       153 ~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~--------~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~--~--  219 (302)
T 3s25_A          153 NTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC--------NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN--P--  219 (302)
T ss_dssp             EEETTEEEEECTTTCCEEEEETTTTEEEEEECS--------CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC--C--
T ss_pred             eEECCEEEEEeCCCceEEEEECCCCCEEEEeCC--------Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC--e--
Confidence            557777776654 57888888876654433321        11 223569888888 55 33 356666665422  1  


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEE-ecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCe
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY  289 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~  289 (304)
                       ..+..      ..+  ..|+|++..++.+. ...+.|..-++..........+   .+..  +++.+.+|+-.....+.
T Consensus       220 -~~Lt~------~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~---~~~~--i~i~~d~Iy~td~~~~~  285 (302)
T 3s25_A          220 -VVLTE------ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG---EFCN--INVTSQYVYFTDFVSNK  285 (302)
T ss_dssp             -EECSC------SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES---CEEE--EEECSSEEEEEETTTCC
T ss_pred             -EEEeC------CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC---ccce--EEEeCCEEEEEECCCCe
Confidence             11111      112  34778444444332 2345677777754332222222   2333  44466777766534455


Q ss_pred             EEEEec
Q 022019          290 ILCWDL  295 (304)
Q Consensus       290 i~vwd~  295 (304)
                      |..-++
T Consensus       286 i~~~~~  291 (302)
T 3s25_A          286 EYCTST  291 (302)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            554443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.18  E-value=5.8  Score=36.47  Aligned_cols=32  Identities=19%  Similarity=0.049  Sum_probs=27.4

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeec
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRA  166 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  166 (304)
                      .++..++++.+.|+++++|++.+++++.+...
T Consensus       244 ~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          244 LSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             ETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             cCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            45667899999999999999999998887654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.47  E-value=1.7  Score=39.94  Aligned_cols=38  Identities=16%  Similarity=0.193  Sum_probs=31.6

Q ss_pred             CceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccc
Q 022019           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV   98 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~   98 (304)
                      ..|.++...++..+++|-+.|+++|+|++.++.+....
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            45777888888889999999999999999988765443

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=88.04  E-value=8.4  Score=30.33  Aligned_cols=152  Identities=9%  Similarity=0.015  Sum_probs=80.3

Q ss_pred             CccEEEEEeCCCCEEEEEcCCCee-----eEEeecccccccccceEEE-EECCCCcEEEEEcCCeEEEEEcC--CC---C
Q 022019          137 TSCVFASTTRDHPIHLWDATTGLL-----RCTYRAYDAVDEITAAFSV-AFNPTGTKIFAGYNKSVRVFDVH--RP---G  205 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~~v~~i-~~~~~~~~l~~~~d~~i~v~d~~--~~---~  205 (304)
                      +...++.++.+|.++--.+..-..     ...+....    ...+..+ ..+.+...++.+..|.+..+...  .-   +
T Consensus       108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke----~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~g  183 (327)
T 3uc1_A          108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD----NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMG  183 (327)
T ss_dssp             SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT----TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCC
T ss_pred             CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC----CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCC
Confidence            466899999999999888754211     11111111    1133333 34444455557889998888776  21   1


Q ss_pred             ccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-------eEeEEec--cccCCeEEEEECCC
Q 022019          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-------ELLYVLH--GQEGGVTHVQFSRD  276 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~--~~~~~v~~~~~~~~  276 (304)
                      +...-...+  .+ .....|.++...+ ....++..+..|.++.-.+...       +-+..++  .-.+.+..+....+
T Consensus       184 r~a~Gv~~i--~L-~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~  259 (327)
T 3uc1_A          184 RATSGVQGM--RF-NIDDRLLSLNVVR-EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDD  259 (327)
T ss_dssp             TTSBCEESS--CC-CTTCCEEEEEECC-TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECT
T ss_pred             cCCCCeeee--cC-CCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCC
Confidence            111111101  11 1233465655554 4457888999999988875422       1122222  21334555444334


Q ss_pred             CcEEEEeeccCCeEEEEeccc
Q 022019          277 GNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       277 ~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      ...++..+ .+|.+.-++...
T Consensus       260 ~~~i~l~T-~~G~~ir~~~~~  279 (327)
T 3uc1_A          260 DSELYAVT-SGGGVIRTAARQ  279 (327)
T ss_dssp             TCEEEEEE-GGGCEEEEEGGG
T ss_pred             CccEEEEc-CCCeEEEEehhh
Confidence            44555556 677777776543

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=85.56  E-value=10  Score=28.93  Aligned_cols=151  Identities=9%  Similarity=-0.033  Sum_probs=80.8

Q ss_pred             CccEEEEEeCCCCEEEEEcCCCe----eeEEeecccccccccceEEEEECCCC-cEEEEEcCCeEEEEEcCCCCc---cc
Q 022019          137 TSCVFASTTRDHPIHLWDATTGL----LRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAGYNKSVRVFDVHRPGR---DF  208 (304)
Q Consensus       137 ~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~d~~i~v~d~~~~~~---~~  208 (304)
                      +...++.++.+|.++-..+..-.    -...+..    .....+..+...... ..++.+..|.+..+....-..   ..
T Consensus        79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~l----kegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a  154 (276)
T 3no0_A           79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKL----TEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGA  154 (276)
T ss_dssp             SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCC----CTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTC
T ss_pred             CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEec----CCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCC
Confidence            34578889999999998875432    0111111    111244455444444 444477999988887643211   10


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCC-------ceEeEEeccccCCeEEEEECCCCcEEE
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-------MELLYVLHGQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~  281 (304)
                      .-...+  .+. ....|.++...+ +...++..+..|.++...+..       ++-+..+ ...+.+..+....+...++
T Consensus       155 ~Gv~~i--~L~-~~d~vv~~~~~~-~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~  229 (276)
T 3no0_A          155 RGVQGI--KLE-KNDETSGLRIWN-GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELL  229 (276)
T ss_dssp             CCEECC--CCC-TTCCEEEEEEES-SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEE
T ss_pred             CCEEEE--ccC-CCCEEEEEEEeC-CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEE
Confidence            111111  111 123455555444 345788889999998887642       2223333 2234455544333334566


Q ss_pred             EeeccCCeEEE--Eeccc
Q 022019          282 TGGRKDPYILC--WDLRK  297 (304)
Q Consensus       282 ~~~~~d~~i~v--wd~~~  297 (304)
                      ..+ .+|.+..  +++..
T Consensus       230 ~~t-~~G~~ir~~~~~~~  246 (276)
T 3no0_A          230 ITT-KNGKAFYDKINQKD  246 (276)
T ss_dssp             EEE-TTSCEEEEEEEGGG
T ss_pred             EEc-CCCeEEEeeeCHHH
Confidence            666 6888777  76654

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=83.20  E-value=16  Score=29.30  Aligned_cols=106  Identities=8%  Similarity=-0.039  Sum_probs=51.9

Q ss_pred             EEEEEeCCCCEEEEEcCC-CeeeEEeecccccccccceEEEEECC--CCcEEEEEcCC----eEEEEEcCCCCccceeee
Q 022019          140 VFASTTRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNP--TGTKIFAGYNK----SVRVFDVHRPGRDFEKYS  212 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~d~----~i~v~d~~~~~~~~~~~~  212 (304)
                      .|.+|...| +.+++-.. +..-......   .....|.+|.++|  .+..++++..+    .|..  ....+..+..+.
T Consensus        24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~---~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~--s~D~G~tW~~~~   97 (394)
T 3b7f_A           24 MLLVATIKG-AWFLASDPARRTWELRGPV---FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFR--SDDGGGNWTEAT   97 (394)
T ss_dssp             EEEEEETTE-EEEEEECTTSCSEEEEEEE---STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEE--ESSTTSCCEECS
T ss_pred             EEEEEecCc-eEEEECCCCCCCceECCcc---CCCCceEEEEECCCCCCeEEEEecCCCCCccEEE--eCCCCCCceECC
Confidence            566677777 65665433 2222111110   0112789999999  55566555544    3433  333344433322


Q ss_pred             eeeccccc-------cccceeEEEeecCC-CcEEEEEecCCeEEEEe
Q 022019          213 TLKGNKEG-------QAGIMSAIAFSPTH-TGMLAIGSYSQTSAIYR  251 (304)
Q Consensus       213 ~~~~~~~~-------~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d  251 (304)
                      ........       ....|.++++.|.+ ...+.+++..+.|...+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~  144 (394)
T 3b7f_A           98 RPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST  144 (394)
T ss_dssp             BCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES
T ss_pred             ccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc
Confidence            11000000       11247788998743 44566666667665553

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=81.21  E-value=37  Score=32.08  Aligned_cols=104  Identities=11%  Similarity=0.045  Sum_probs=59.7

Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC------CcEEEEE--cCCeEEEEEcCCCCccce
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT------GTKIFAG--YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~------~~~l~~~--~d~~i~v~d~~~~~~~~~  209 (304)
                      +..++.++ ++.+.++.+..++.....+.    .-...|.|+++.|.      +.++++|  .|++++|+++..... . 
T Consensus       523 ~~~vvva~-g~~l~~fel~~~~L~~~~~~----~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~-~-  595 (1158)
T 3ei3_A          523 SSQVVVAV-GRALYYLQIHPQELRQISHT----EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL-L-  595 (1158)
T ss_dssp             SSEEEEEE-TTEEEEEEEETTEEEEEEEE----ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE-E-
T ss_pred             CCEEEEEE-CCEEEEEEeeCCceeeeccc----CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe-E-
Confidence            34565554 67788888876643322111    11237899999864      3678876  499999999974211 1 


Q ss_pred             eeeeeeccccccccceeEEEeec-CCCcEEEEEecCCeEEEEecC
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSP-THTGMLAIGSYSQTSAIYRED  253 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~dg~i~i~d~~  253 (304)
                      ....+    . ......++.+.. .+..+|.+|-.||.+.-+.+.
T Consensus       596 ~~~~L----~-~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          596 HKEML----G-GEIIPRSILMTTFESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             EEEEC----C-SSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred             EEEEC----C-CCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence            11111    1 111233343321 145688899999997665543

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=80.23  E-value=7.1  Score=33.58  Aligned_cols=60  Identities=20%  Similarity=0.254  Sum_probs=39.4

Q ss_pred             cCccceeCCCccEEEEEeCC------------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE
Q 022019          128 FPHMSASDPTSCVFASTTRD------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG  191 (304)
Q Consensus       128 ~~~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  191 (304)
                      .|.-+.|+|.|++++.-..+            ..+.+.+..+++....+..+..    ..++.+.|+||++.|++.
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g----aE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG----CEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT----CEEEEEEECTTSSEEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC----ccCcCeeECCCCCEEEEE
Confidence            34556778899866654332            1345556667776665554432    388999999999888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	304
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.004
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.5 bits (184), Expect = 4e-16
 Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
                     +  P + +F S   D    LWD   G+ R T+  +++        ++ F 
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES-----DINAICFF 235

Query: 183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241
           P G     G  + + R+FD+                       +++++FS +   +L  G
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG------ITSVSFSKSGR-LLLAG 288

Query: 242 SYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294
                  ++     +   VL G +  V+ +  + DG  + TG   D ++  W+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.5 bits (132), Expect = 2e-09
 Identities = 54/320 (16%), Positives = 94/320 (29%), Gaps = 47/320 (14%)

Query: 3   EEEQQQTLQQQQIYSDTEVTEAAQENQQEYTWPLIRFDVPPHRTY--HFYNQFRTSSIPN 60
           E+ + Q    ++  +D  +++           P+ R  +   RT   H       + I  
Sbjct: 12  EQLKNQIRDARKACADATLSQITNN-----IDPVGRIQMRTRRTLRGH------LAKI-- 58

Query: 61  NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN-------GISYDVNACSLAKDQD----- 108
                + W  D    +++S+D  L I+              S  V  C+ A   +     
Sbjct: 59  ---YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115

Query: 109 -SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY 167
                  +        +      ++              +  +     TT  L       
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ 175

Query: 168 DAVDEITAAFSVA----FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223
                      V        T   +    + S +++DV    R+     T  G++     
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV----REGMCRQTFTGHE----S 227

Query: 224 IMSAIAFSPTHTGMLAIGSYSQTSAI--YREDNMELLYVLHGQEGGVTHVQFSRDGNYLY 281
            ++AI F P      A GS   T  +   R D   + Y       G+T V FS+ G  L 
Sbjct: 228 DINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286

Query: 282 TGGRKDPYILCWDLRKAVQV 301
            G   D     WD  KA + 
Sbjct: 287 AGY-DDFNCNVWDALKADRA 305

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.4 bits (129), Expect = 5e-09
 Identities = 18/148 (12%), Positives = 50/148 (33%), Gaps = 28/148 (18%)

Query: 54  RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113
           +T +   + +  I + P+G++F T S+D T R+F L  +      +              
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD------------ 267

Query: 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173
                   +    +         +  +  +   D   ++WDA           +D  + +
Sbjct: 268 ---NIICGITSVSF-------SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRV 315

Query: 174 TAAFSVAFNPTGTKIF-AGYNKSVRVFD 200
           +    +     G  +    ++  +++++
Sbjct: 316 S---CLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 8/111 (7%), Positives = 23/111 (20%), Gaps = 24/111 (21%)

Query: 44  HRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSL 103
                      +       +  + +S  G   L   +D    ++   +   +  +     
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD- 312

Query: 104 AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWD 154
                             V                   A+ + D  + +W+
Sbjct: 313 ----------------NRVSCLGV-------TDDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.1 bits (162), Expect = 2e-13
 Identities = 45/267 (16%), Positives = 83/267 (31%), Gaps = 36/267 (13%)

Query: 65  GIKWSPDGSSFLTSSEDKTLRIFSLPEN-------GISYDVNACSLAKDQDSYEASL--- 114
            + + P  S  +++SED T++++            G +  V   S         +     
Sbjct: 22  RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 81

Query: 115 --------VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA 166
                         +++         +  P      S +RD  I +W+  TG    T+  
Sbjct: 82  TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG 141

Query: 167 YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDV-----------HRPGRDFEKYSTL 214
           +           V  N  GT I +   +++VRV+ V           HR   +   ++  
Sbjct: 142 HREWV-----RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS 274
                      S    S      L  GS  +T  ++       L  L G +  V  V F 
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256

Query: 275 RDGNYLYTGGRKDPYILCWDLRKAVQV 301
             G ++ +    D  +  WD +    +
Sbjct: 257 SGGKFILSCA-DDKTLRVWDYKNKRCM 282

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.0 bits (154), Expect = 3e-12
 Identities = 40/291 (13%), Positives = 96/291 (32%), Gaps = 50/291 (17%)

Query: 20  EVTEAAQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS 79
            V + + ++  +               +  +   RT    ++ +  +   P+G   +++S
Sbjct: 61  SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120

Query: 80  EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139
            DKT++++ +                        +    G   +     P+         
Sbjct: 121 RDKTIKMWEVQTG-------------------YCVKTFTGHREWVRMVRPN-----QDGT 156

Query: 140 VFASTTRDHPIHLWDATTGLLRCTYRAYD---------------AVDEITAAFSVAFNPT 184
           + AS + D  + +W   T   +   R +                ++ E T + +      
Sbjct: 157 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 216

Query: 185 GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
           G  + +G  +K+++++DV           TL G+       +  + F       +   + 
Sbjct: 217 GPFLLSGSRDKTIKMWDV----STGMCLMTLVGHD----NWVRGVLFHSGGK-FILSCAD 267

Query: 244 SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD 294
            +T  ++   N   +  L+  E  VT + F +   Y+ TG   D  +  W+
Sbjct: 268 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV-DQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 259 YVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
           Y L G    VT V F    + + +    D  I  WD   
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASE-DATIKVWDYET 48

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.1 bits (162), Expect = 3e-13
 Identities = 31/188 (16%), Positives = 66/188 (35%), Gaps = 15/188 (7%)

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE--ITAAFSVA 180
                   ++ S       A+ + D  + +WD+ TG L     + +        + +SV 
Sbjct: 202 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 261

Query: 181 FNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS----TLKGNKEGQAGIMSAIAFSPTHT 235
           F   G  + +G  ++SV+++++       +  +    T +    G    + ++A +    
Sbjct: 262 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 321

Query: 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV------QFSRDGNYLYTGGRKDPY 289
             +  GS  +    + + +   L +L G    V  V          + N   TG   D  
Sbjct: 322 -YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS-GDCK 379

Query: 290 ILCWDLRK 297
              W  +K
Sbjct: 380 ARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 3e-09
 Identities = 18/140 (12%), Positives = 49/140 (35%), Gaps = 14/140 (10%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
           + ++ DG S ++ S D+++++++L       D    +    + +Y     +   + V   
Sbjct: 260 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-----IGHKDFVLSV 314

Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY-DAVDEITAAFSVAFNPT 184
                            S ++D  +  WD  +G      + + ++V  +  A   +  P 
Sbjct: 315 AT-------TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367

Query: 185 GTKIF-AGYNKSVRVFDVHR 203
                    +   R++   +
Sbjct: 368 YNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 6e-07
 Identities = 40/246 (16%), Positives = 86/246 (34%), Gaps = 30/246 (12%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA-CSLAKDQDSYEASLVVTEGESVYD 124
           +K+S DG  +L +  +KT +++ + +  +   ++   +  KD ++   S   +    +  
Sbjct: 68  VKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 126

Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT 184
            C+ P     D       +  R   I   +    ++       D            F   
Sbjct: 127 VCFSP-----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY------FPSG 175

Query: 185 GTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244
              +    +++VR++D+                       ++ +A SP     +A GS  
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLS---------IEDGVTTVAVSPGDGKYIAAGSLD 226

Query: 245 QTSAIYREDNMELLYVLH-------GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
           +   ++  +   L+  L        G +  V  V F+RDG  + +G   D  +  W+L+ 
Sbjct: 227 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL-DRSVKLWNLQN 285

Query: 298 AVQVVY 303
           A     
Sbjct: 286 ANNKSD 291

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 15/114 (13%), Positives = 31/114 (27%), Gaps = 18/114 (15%)

Query: 41  VPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA 100
               +T +      T     +F+  +  + +    L+ S+D+ +  +          +  
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG 348

Query: 101 CSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWD 154
                               SV         S   P   VFA+ + D    +W 
Sbjct: 349 HR-----------------NSVISVAVANGSSLG-PEYNVFATGSGDCKARIWK 384

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (123), Expect = 4e-08
 Identities = 18/175 (10%), Positives = 40/175 (22%), Gaps = 6/175 (3%)

Query: 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188
            H+S    +        RD  +++ D                +  +   S          
Sbjct: 64  VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123

Query: 189 FAG--YNKSVRVFDVHRPG---RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243
            AG  +     + D            +  T    +      ++AI  S      +     
Sbjct: 124 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 183

Query: 244 SQTSAIYREDNMELLYVLHGQEGGVTH-VQFSRDGNYLYTGGRKDPYILCWDLRK 297
           +    +    ++  L           H         Y  T       ++  D ++
Sbjct: 184 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (97), Expect = 7e-05
 Identities = 16/225 (7%), Positives = 44/225 (19%), Gaps = 30/225 (13%)

Query: 65  GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124
             + S  G        D  + +  L                          +  G     
Sbjct: 66  ISRLSASGRYLFVIGRDGKVNMIDL----------------WMKEPTTVAEIKIGSEARS 109

Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAA------FS 178
                     D      A         + D  T   +          +           +
Sbjct: 110 IETSKMEGWEDKY--AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 167

Query: 179 VAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238
           +  +    +      ++ ++  V     +  K + +          +       +H   +
Sbjct: 168 ILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA-----ERFLHDGGLDGSHRYFI 222

Query: 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG 283
              +      +      +L+  +    G   H     +  +   G
Sbjct: 223 TAANARNKLVVIDTKEGKLV-AIEDTGGQTPHPGRGANFVHPTFG 266

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 226 SAIAFSPTHTGMLAIGSYSQTSAIYREDN--MELLYVLHGQEGGVTHVQFSRDGNYLYTG 283
           S  A++   T  +AI   +    IY +       ++ L    G VT V ++ D N + T 
Sbjct: 11  SCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 284 GRKDPYILCWD 294
           G  D     W 
Sbjct: 70  GT-DRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (111), Expect = 9e-07
 Identities = 30/261 (11%), Positives = 64/261 (24%), Gaps = 33/261 (12%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPEN---------GISYDVNACSLAKDQD-----SYE 111
             W+ D +       +  + I+    N           +  V     A D +       +
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72

Query: 112 ASLVVTEGESVYDFCWFPHMSASD--------PTSCVFASTTRDHPIHLWDATTGLLRCT 163
            +  V   +          +  +         P    FA  +    I +           
Sbjct: 73  RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132

Query: 164 YRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYST---------- 213
            +        T         +        +   R+F  +    +     T          
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 192

Query: 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQF 273
           L        G +  + FS   +  +A  S+  T  +   D    +  L  +   +  V F
Sbjct: 193 LMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF 251

Query: 274 SRDGNYLYTGGRKDPYILCWD 294
             + + +  G    P +  +D
Sbjct: 252 ITESSLVAAGHDCFPVLFTYD 272

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 15/130 (11%), Positives = 41/130 (31%), Gaps = 12/130 (9%)

Query: 170 VDEITAAFSVAFNPTGTKI-FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAI 228
           V+ I+     A+N   T+I     N  V +++    G  + +   LK +     G ++ +
Sbjct: 7   VEPIS---CHAWNKDRTQIAICPNNHEVHIYEKS--GNKWVQVHELKEHN----GQVTGV 57

Query: 229 AFSPTHTGMLAIGSYSQTSAIY-REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287
            ++P     +      + + ++  +       ++  +                +  G   
Sbjct: 58  DWAPDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS 116

Query: 288 PYILCWDLRK 297
             I      +
Sbjct: 117 RVISICYFEQ 126

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 32/237 (13%), Positives = 75/237 (31%), Gaps = 22/237 (9%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPEN-------GISYDVNACSLAKDQDSYEASLVVTEGE 120
               G+  ++ S+D TL+++S           G +  V +  +  +     ++    +  
Sbjct: 23  LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTY-RAYDAVDEITAAFSV 179
           +         +     T        +       DAT  +      +    +    AA   
Sbjct: 83  NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 142

Query: 180 AFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239
                   +   Y+  V+V+D            T     +G    + ++ F   H   + 
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPE--------TETCLHTLQGHTNRVYSLQFDGIH---VV 191

Query: 240 IGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
            GS   +  ++  +    ++ L G +   + ++     N L + G  D  +  WD++
Sbjct: 192 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVS-GNADSTVKIWDIK 245

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 5e-06
 Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 26/184 (14%)

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
           ++       +    D       S + D  I +WD  TG    T   + ++       +  
Sbjct: 172 TLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVWDVETGNCIHTLTGHQSL-------TSG 222

Query: 181 FNPTGTKIFAGYN-KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239
                  + +G    +V+++D+                 +G     SA+     +   + 
Sbjct: 223 MELKDNILVSGNADSTVKIWDIKTGQCLQ--------TLQGPNKHQSAVTCLQFNKNFVI 274

Query: 240 IGSYSQTSAIYREDNMELLYVL-----HGQEGGVTHVQFSRDGNYLYTGGR---KDPYIL 291
             S   T  ++     E +  L      G  G V  ++ S        G R   ++  +L
Sbjct: 275 TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 334

Query: 292 CWDL 295
             D 
Sbjct: 335 VLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 17/155 (10%), Positives = 45/155 (29%), Gaps = 22/155 (14%)

Query: 68  WSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE----SVY 123
              DG   ++ S D ++R++ +      + +            + +++V+        ++
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 242

Query: 124 DFCWFPH-------------MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV 170
           D                   ++          +++ D  + LWD  TG         ++ 
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302

Query: 171 DEITAAFSVAFNPTGTKIFAGYN-----KSVRVFD 200
                 + +  + T      G         + V D
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG 266
           + +    LKG+ +    +++ + F       +  GS   T  ++     + L  L G  G
Sbjct: 5   ELKSPKVLKGHDDH---VITCLQFCGNR---IVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58

Query: 267 GVTHVQFSRDGNYLYTGGRKDPYILCW 293
           GV   Q   +     +  R        
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAE 85

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 20/194 (10%), Positives = 40/194 (20%), Gaps = 8/194 (4%)

Query: 106 DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCT 163
            Q  +   +   +  +        +  A D  S      +        D           
Sbjct: 158 MQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 217

Query: 164 YRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223
            + +       +       P      AG      ++    P         +    E    
Sbjct: 218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277

Query: 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG 283
           I S                       Y     ++       +  +T ++ S D   +   
Sbjct: 278 IYSVPVHGEFAA-YYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVR 332

Query: 284 GRKDPYILCWDLRK 297
              D  I  + L K
Sbjct: 333 KD-DGKIYTFPLEK 345

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 19/174 (10%), Positives = 44/174 (25%), Gaps = 21/174 (12%)

Query: 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-- 190
           A          T   + +H+ D  +  +  +      + +     +    P     +   
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV----MPDKFGPGTAMMAPDNRTAYVLN 58

Query: 191 GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY 250
            +   +   D+         ++ L          M + A SP    + A  + +Q    +
Sbjct: 59  NHYGDIYGIDLDT--CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116

Query: 251 REDNMELLYVL-------------HGQEGGVTHVQFSRDGNYLYTGGRKDPYIL 291
                  L V                    V  ++ + DG+    G       +
Sbjct: 117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDV 170

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 24/269 (8%), Positives = 58/269 (21%), Gaps = 19/269 (7%)

Query: 36  LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS 95
           +   D+   +     N           +     SPDG     +                 
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 96  YDVNACSLAKDQDSYE--------ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD 147
            +V + +   +               +   +  S+Y      +           A   R+
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRD 207
                + A   L    +++      +    +   +       A         D+      
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL------ 237

Query: 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG 267
             K       +      +               G  ++ +    +    +          
Sbjct: 238 --KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLD--HT 293

Query: 268 VTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
              V F + G+ LY GG     +  ++  
Sbjct: 294 YYCVAFDKKGDKLYLGGT-FNDLAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 9/69 (13%), Positives = 17/69 (24%), Gaps = 2/69 (2%)

Query: 228 IAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG-GVTHVQFSRDGNYLYTGGRK 286
            A    H   + + +Y     +    +  +       +  G      + D    Y     
Sbjct: 2   PALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 287 DPYILCWDL 295
              I   DL
Sbjct: 61  YGDIYGIDL 69

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 30/242 (12%), Positives = 57/242 (23%), Gaps = 9/242 (3%)

Query: 60  NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEG 119
           +N+++  K  PDG + +   E  TL I+ L            S A    +   S      
Sbjct: 97  DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156

Query: 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSV 179
            S             + T         D    +  +  G    T    + V         
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216

Query: 180 AFNPTGTKI------FAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233
                          +    + + V                K         + ++ F+  
Sbjct: 217 QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC 276

Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293
                           +R      ++    +   V     S D  Y+ TG   D     +
Sbjct: 277 GK-WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGS-GDKKATVY 333

Query: 294 DL 295
           ++
Sbjct: 334 EV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 23/249 (9%), Positives = 60/249 (24%), Gaps = 16/249 (6%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPEN------------GISYDVNACSLAKDQDSYEAS 113
           +  S       T      ++++ +                    + +C L  D  +    
Sbjct: 57  VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115

Query: 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173
              +           P + A   +S          P      +                +
Sbjct: 116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL 175

Query: 174 TAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233
              F    +       +     +    +    R ++     +  +      + ++ + PT
Sbjct: 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT 235

Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293
              +      S    ++     +    LH     V  ++F+  G +  + G KD  +  W
Sbjct: 236 GEWLAVGMESSNVEVLHVNKPDKYQLHLHESC--VLSLKFAYCGKWFVSTG-KDNLLNAW 292

Query: 294 DLRKAVQVV 302
                  + 
Sbjct: 293 RTPYGASIF 301

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 10/127 (7%), Positives = 29/127 (22%), Gaps = 25/127 (19%)

Query: 28  NQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIF 87
                   +          +          +  + +  +K++  G  F+++ +D  L  +
Sbjct: 233 CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292

Query: 88  SLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD 147
             P                     +     E  SV                    + + D
Sbjct: 293 RTP------------------YGASIFQSKESSSVLSCDI-------SVDDKYIVTGSGD 327

Query: 148 HPIHLWD 154
               +++
Sbjct: 328 KKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 12/116 (10%), Positives = 31/116 (26%), Gaps = 4/116 (3%)

Query: 178 SVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM 237
           +V  +     ++ G    V+V+D+  P     K    + +   +   + +    P     
Sbjct: 56  AVTISNPTRHVYTGGKGCVKVWDISHP---GNKSPVSQLDCLNRDNYIRSCKLLPDGC-T 111

Query: 238 LAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293
           L +G  + T +I+                       +   +            +  
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 1e-05
 Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 13/129 (10%)

Query: 176 AFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235
              ++++PT   I     KS  V  +              G+    + +++ + FSP   
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH---GSSVVTTVKFSPIKG 76

Query: 236 G-MLAIGSYSQTSAIYREDNMELLYVLHGQ--------EGGVTHVQFSRDGN-YLYTGGR 285
              L  G  S    ++     +    +            G ++ + +  +G      G  
Sbjct: 77  SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136

Query: 286 KDPYILCWD 294
           +D + +   
Sbjct: 137 RDNFGVFIS 145

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 1/79 (1%)

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
            +       + S   S  FA+   D  I +WD TT      +              V   
Sbjct: 248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQ-QVGVVAT 306

Query: 183 PTGTKIFAGYNKSVRVFDV 201
             G  I    + ++  +++
Sbjct: 307 GNGRIISLSLDGTLNFYEL 325

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 27/255 (10%), Positives = 71/255 (27%), Gaps = 42/255 (16%)

Query: 69  SPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128
           S   S  ++ S D  L+++           +         S            ++     
Sbjct: 21  SACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS-----------GLHHVDVL 69

Query: 129 PHMSASDPTSCVFASTTRDHPIHLWDATTG-----LLRCTYRAYDAVDEITAAFSVAFNP 183
             +       C+ A+T+    +  +  T       ++       D+  +  + +++ +  
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 184 TGTK------IFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK----------EGQAGIMSA 227
           +  +      +      +  ++  H    +    +                   +   ++
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 228 IAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------EGGVTHVQFSRDGNYLY 281
           +  S    G++A G  + T  I     +  LY    Q         +  V+FS  G+ L 
Sbjct: 190 VDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 282 TGG--RKDPYILCWD 294
                     I  ++
Sbjct: 248 IAHDSNSFGCITLYE 262

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 4e-05
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 256 ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV 301
            +  V +G    +T +  S DG  L++    + +I  WD+   +  
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADA-EGHINSWDISTGISN 47

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 5e-04
 Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
                     +  P +   A+ + D+ + +W+                       SV + 
Sbjct: 221 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN--SVIWL 278

Query: 183 PTGTKIFAGYNKSVRVFDV 201
              T + AG + +++ ++V
Sbjct: 279 NETTIVSAGQDSNIKFWNV 297

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 15/128 (11%), Positives = 37/128 (28%), Gaps = 9/128 (7%)

Query: 171 DEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229
           D I+    +   P+ + +    ++ S+ V+      ++      L  +   +  ++    
Sbjct: 12  DYIS---DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----DLLQSLRYKHPLLC-CN 63

Query: 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY 289
           F       + +G+                  L   E  +   +  + G+        D  
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 290 ILCWDLRK 297
           I   D R 
Sbjct: 124 IEVIDPRN 131

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 3/43 (6%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 255 MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK 297
           M+++ +    +  ++ ++     + L      D  +  +    
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSW-DGSLTVYKFDI 42

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 18/174 (10%), Positives = 41/174 (23%), Gaps = 9/174 (5%)

Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVA 180
           +  +      +   D  S        +  +  +                +       ++ 
Sbjct: 143 NSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL 202

Query: 181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFE-------KYSTLKGNKEGQAGIMSAIAFSPT 233
                    +  +  V V      G D+        +   L       A  +++I FSP 
Sbjct: 203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262

Query: 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD 287
           H   L         + +     + +          + V+ +   N L      D
Sbjct: 263 HK-FLYTAGSDGIISCWNLQTRKKIKNFAK-FNEDSVVKIACSDNILCLATSDD 314

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 10/96 (10%), Positives = 24/96 (25%), Gaps = 18/96 (18%)

Query: 59  PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTE 118
           P +++  IK  P  S  L +S D +L ++       + D+                    
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--------------RY 55

Query: 119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWD 154
              +    +  +            +   +       
Sbjct: 56  KHPLLCCNFIDN----TDLQIYVGTVQGEILKVDLI 87

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271
           +TL+G+      +++ + F   +   +  G+  +   +Y   N + L  L G +GGV  +
Sbjct: 6   TTLRGHMTS---VITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL 59

Query: 272 QFSRDGNYLYTGGRKDPYILCW 293
           +++  G  L +G       +  
Sbjct: 60  KYAHGG-ILVSGSTDRTVRVWD 80

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 20/171 (11%), Positives = 40/171 (23%), Gaps = 6/171 (3%)

Query: 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188
            H+S    +        RD  I + D               ++  +   S          
Sbjct: 64  VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123

Query: 189 FAG--YNKSVRVFDVHRP---GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML-AIGS 242
            AG  +     + D            +  T+          ++AI  S  H   +  +  
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183

Query: 243 YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW 293
             +   +  +D   L     G    +    +     Y  T       +   
Sbjct: 184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVI 234

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (89), Expect = 3e-04
 Identities = 8/80 (10%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWD-ATTGLLRCTYRAYDAVDEITAAFSVAF 181
                    +  +    + A+ + D  I ++       +     A+   D +    ++ +
Sbjct: 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK--DGVN---NLLW 266

Query: 182 NPTGTKIFAGYNKSVRVFDV 201
               T + +G +  ++ ++V
Sbjct: 267 ETPSTLVSSGADACIKRWNV 286

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 29/275 (10%), Positives = 60/275 (21%), Gaps = 46/275 (16%)

Query: 65  GIKWSPDGSS-FLTSSEDKTLRIFSL-------------------PENGISYDVNACSLA 104
               +P G   + T ++ ++L    L                      G +   +  +LA
Sbjct: 38  VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLA 97

Query: 105 KDQDSYEASLVVTEGESVYDFCW---------------FPHMSASDPTSCVFASTTRDHP 149
             +      L   E +      +                  M A            RD  
Sbjct: 98  IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLH 157

Query: 150 IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFE 209
           +   +    L+          +       +A                       P     
Sbjct: 158 VMDPE-AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTA 216

Query: 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---- 265
             + L    + + G M+            +       +  +   N+   + L        
Sbjct: 217 YRTGLL-TMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKR 275

Query: 266 ----GGVTHVQFSRDGNYLYTGGRKDPYILCWDLR 296
                    V  S DG+ ++ GG     +  +D  
Sbjct: 276 VPLPHSYYSVNVSTDGSTVWLGGA-LGDLAAYDAE 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.3 bits (87), Expect = 8e-04
 Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 6/83 (7%)

Query: 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTH 270
           + +L     G A     +  +P     +   +   +       ++    +        T 
Sbjct: 9   FPSLPRTARGTA---VVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTV 63

Query: 271 VQFSRDGNYLYTGGRKDPYILCW 293
            + S  G Y  +G      +  W
Sbjct: 64  AKTSPSGYYCASGDV-HGNVRIW 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 5/79 (6%)

Query: 123 YDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182
                        P     AS + D  I +W+  T  +  T      ++       +   
Sbjct: 235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE----DQQLGII 290

Query: 183 PTGTKIFAG-YNKSVRVFD 200
            T   + +   N  +   +
Sbjct: 291 WTKQALVSISANGFINFVN 309

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 11/94 (11%), Positives = 29/94 (30%), Gaps = 6/94 (6%)

Query: 66  IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK-DQDSYEASLVVTEGESVYD 124
             +   G   +   ++    +    E+  S    A + +       + S  ++ G     
Sbjct: 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDA 318

Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG 158
                     D  S  +A++     + ++DA + 
Sbjct: 319 IIAAQ-----DGASDNYANSAGTEVLDIYDAASD 347

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 36/265 (13%), Positives = 70/265 (26%), Gaps = 34/265 (12%)

Query: 65  GIKWSPDGSS-FLTSSEDKTLRIFSLPEN-----------------GISYDVNACSLAKD 106
            +  SPD    ++    +  +  + +  +                  IS D     +   
Sbjct: 41  PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVG 100

Query: 107 QDSYEASLVVTEGESVYDFCWFPHMSASDPTS---------CVFASTTRDHPIHLWDATT 157
             +     V    + +               S             +  +D       +  
Sbjct: 101 SYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 160

Query: 158 GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLK 215
           G L     A     E      + F+P     +     N SV V+++  P  + E   TL 
Sbjct: 161 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD 220

Query: 216 GNKEGQAGIMSA--IAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG---QEGGVTH 270
              E  +    A  I  +P    + A    +    ++       +    G    E     
Sbjct: 221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRG 280

Query: 271 VQFSRDGNYLYTGGRKDPYILCWDL 295
                 G YL   G+K  +I  +++
Sbjct: 281 FNVDHSGKYLIAAGQKSHHISVYEI 305

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	304
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.85
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.78
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.78
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.72
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.65
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.6
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.58
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.44
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.43
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.39
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.37
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.35
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.32
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.3
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.3
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.29
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.29
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.27
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.2
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.14
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.13
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.02
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.02
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.0
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.98
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.88
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.81
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.61
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.55
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.55
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.38
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.37
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.02
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.9
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.84
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.83
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.81
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.8
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.69
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.32
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.06
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.98
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.92
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.88
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.77
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.53
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.49
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.25
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.87
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.84
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.35
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.33
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.27
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.02
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.75
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.69
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.17
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.59
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	92.29
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.97
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.61
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.49
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.45
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	89.68

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.2e-40  Score=263.22  Aligned_cols=231  Identities=18%  Similarity=0.288  Sum_probs=173.8

Q ss_pred             ceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccc-------cccccC--------Cccc----
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC-------SLAKDQ--------DSYE----  111 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-------~~~~~~--------~~~~----  111 (304)
                      +..++++||.+.|++|+|+|++++||||+.||+|+|||+.++.........       .+.+..        +...    
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            455689999999999999999999999999999999999877543222110       000000        0000    


Q ss_pred             ----------eEEEeecCCeEEEEeec----------------------------------CccceeCCCccEEEEEeCC
Q 022019          112 ----------ASLVVTEGESVYDFCWF----------------------------------PHMSASDPTSCVFASTTRD  147 (304)
Q Consensus       112 ----------~~~~~~~~~~v~~~~~~----------------------------------~~~~~~~~~~~~l~~~~~d  147 (304)
                                ......+..........                                  .....+.+.+.++++++.|
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  205 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence                      00000000000000000                                  0112345678889999999


Q ss_pred             CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeecccccccccee
Q 022019          148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS  226 (304)
Q Consensus       148 g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~  226 (304)
                      +.|++||+++++....+..+..     .|++++|+|++++|+++ .|+.|++||++...    .....  ....+...+.
T Consensus       206 ~~v~i~d~~~~~~~~~~~~h~~-----~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~----~~~~~--~~~~~~~~i~  274 (340)
T d1tbga_         206 ASAKLWDVREGMCRQTFTGHES-----DINAICFFPNGNAFATGSDDATCRLFDLRADQ----ELMTY--SHDNIICGIT  274 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTTTE----EEEEE--CCTTCCSCEE
T ss_pred             ceEEEEECCCCcEEEEEeCCCC-----CeEEEEECCCCCEEEEEeCCCeEEEEeecccc----ccccc--ccccccCceE
Confidence            9999999999999888876654     89999999999999965 99999999998642    11111  1245566799


Q ss_pred             EEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          227 AIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       227 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      +++|+| ++.+|++|+.||.|++||+.+++++..+.+|..+|++++|+|++.+|++|+ .||.|++||
T Consensus       275 ~~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s-~Dg~v~iWd  340 (340)
T d1tbga_         275 SVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS-WDSFLKIWN  340 (340)
T ss_dssp             EEEECS-SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE-TTSCEEEEC
T ss_pred             EEEECC-CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEc-cCCEEEEeC
Confidence            999999 788999999999999999999999999999999999999999999999999 999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.7e-37  Score=243.99  Aligned_cols=223  Identities=17%  Similarity=0.216  Sum_probs=181.8

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV  115 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (304)
                      +..|++.......      .+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+.....               ....
T Consensus        40 v~i~~~~~~~~~~------~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~---------------~~~~   98 (311)
T d1nr0a1          40 VYTVPVGSLTDTE------IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL---------------KTTI   98 (311)
T ss_dssp             EEEEETTCSSCCE------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE---------------EEEE
T ss_pred             EEEEECCCCceeE------EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc---------------cccc
Confidence            4566665543333      667999999999999999999999999999999998653211               1123


Q ss_pred             eecCCeEEEEeecCccceeCCCccEEEEEeC--CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcE-EEEE-
Q 022019          116 VTEGESVYDFCWFPHMSASDPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK-IFAG-  191 (304)
Q Consensus       116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~-  191 (304)
                      ..|..+|.+++|       +|++++|++++.  ++.+++|++.+++....+..+..     .|.+++|+|++++ +++| 
T Consensus        99 ~~~~~~v~~v~~-------s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~-----~v~~v~~~~~~~~~l~sgs  166 (311)
T d1nr0a1          99 PVFSGPVKDISW-------DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQAR-----AMNSVDFKPSRPFRIISGS  166 (311)
T ss_dssp             ECSSSCEEEEEE-------CTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSS-----CEEEEEECSSSSCEEEEEE
T ss_pred             ccccCccccccc-------ccccccccccccccccccccccccccccccccccccc-----ccccccccccceeeecccc
Confidence            446678999988       778999999886  45699999999888777766554     8999999999886 5555 


Q ss_pred             cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-------cc
Q 022019          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-------GQ  264 (304)
Q Consensus       192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~  264 (304)
                      .|+.|++||++..        ........|..+|.++.|+| ++.++++++.||.|++||..++..+..+.       +|
T Consensus       167 ~d~~i~i~d~~~~--------~~~~~~~~~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h  237 (311)
T d1nr0a1         167 DDNTVAIFEGPPF--------KFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH  237 (311)
T ss_dssp             TTSCEEEEETTTB--------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred             ccccccccccccc--------ccccccccccccccccccCc-cccccccccccccccccccccccccccccccccccccc
Confidence            8999999999862        22223366788899999999 77899999999999999999888776654       57


Q ss_pred             cCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          265 EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       265 ~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      ...|++++|+|+|++|++|+ .||.|+|||+++++.+
T Consensus       238 ~~~V~~~~~s~~~~~l~tgs-~Dg~v~iwd~~t~~~~  273 (311)
T d1nr0a1         238 SGSVFGLTWSPDGTKIASAS-ADKTIKIWNVATLKVE  273 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEE
T ss_pred             cccccccccCCCCCEEEEEe-CCCeEEEEECCCCcEE
Confidence            88999999999999999999 9999999999998764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-36  Score=239.26  Aligned_cols=226  Identities=18%  Similarity=0.222  Sum_probs=173.5

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccc-------cccC------------------Cc
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSL-------AKDQ------------------DS  109 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-------~~~~------------------~~  109 (304)
                      .+.||.++|++|+|+|++++|+||+.||+|+|||+.+++....+..+..       ....                  ..
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF   91 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccc
Confidence            6889999999999999999999999999999999988766443322110       0000                  00


Q ss_pred             cceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE
Q 022019          110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF  189 (304)
Q Consensus       110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  189 (304)
                      ........+...+..       ..+++++..+++++.|+.+++||+++++....+..+..     .+.+++|+|++.+++
T Consensus        92 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~  159 (317)
T d1vyhc1          92 ECIRTMHGHDHNVSS-------VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-----WVRMVRPNQDGTLIA  159 (317)
T ss_dssp             CEEECCCCCSSCEEE-------EEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECTTSSEEE
T ss_pred             cccccccccccccee-------eeccCCCceEEeeccCcceeEeecccceeeeEEccCCC-----cceeeecccCCCEEE
Confidence            000001111222222       34578899999999999999999999998888876654     889999999999999


Q ss_pred             EE-cCCeEEEEEcCCCCcccee-----------------------------------------------ee-------ee
Q 022019          190 AG-YNKSVRVFDVHRPGRDFEK-----------------------------------------------YS-------TL  214 (304)
Q Consensus       190 ~~-~d~~i~v~d~~~~~~~~~~-----------------------------------------------~~-------~~  214 (304)
                      ++ .|+.|++|+++........                                               +.       ..
T Consensus       160 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  239 (317)
T d1vyhc1         160 SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC  239 (317)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred             EEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcE
Confidence            65 9999999998763211000                                               00       00


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      .....+|...|.+++|+| ++.+|++|+.||.|++||+++++++..+.+|...|++++|+|++++|++|+ .||+|++||
T Consensus       240 ~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s-~Dg~i~iWd  317 (317)
T d1vyhc1         240 LMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS-VDQTVKVWE  317 (317)
T ss_dssp             EEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEE-TTSEEEEEC
T ss_pred             EEEEeCCCCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEeC
Confidence            112345677899999999 778999999999999999999999999999999999999999999999999 999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-34  Score=230.17  Aligned_cols=234  Identities=15%  Similarity=0.227  Sum_probs=176.3

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcc--ccc-------ccccccc
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY--DVN-------ACSLAKD  106 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~--~~~-------~~~~~~~  106 (304)
                      +..|++......... ......+|.+.|.+++|+|+|++|++|+.||.|++||+.......  ...       .......
T Consensus        74 V~iWd~~~~~~~~~~-~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  152 (337)
T d1gxra_          74 VKVWDISHPGNKSPV-SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD  152 (337)
T ss_dssp             EEEEETTSTTCCSCS-EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT
T ss_pred             EEEEEccCCccccee-EEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccc
Confidence            566777655433321 122456899999999999999999999999999999987543211  100       0000000


Q ss_pred             C------------------CccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccc
Q 022019          107 Q------------------DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD  168 (304)
Q Consensus       107 ~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  168 (304)
                      .                  ..........+...+.+++|       ++++..+++++.|+.+++||+++++....+... 
T Consensus       153 ~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~-------s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~-  224 (337)
T d1gxra_         153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI-------SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT-  224 (337)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE-------CTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-------cccccccccccccccccccccccceeecccccc-
Confidence            0                  00111112223444555544       789999999999999999999999877666533 


Q ss_pred             ccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeE
Q 022019          169 AVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTS  247 (304)
Q Consensus       169 ~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i  247 (304)
                           ..|.+++|+|++++++++ .|+.+++||++....     .    ....|...|.+++|+| ++.+|++|+.||.|
T Consensus       225 -----~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~----~~~~~~~~i~~v~~s~-~g~~l~s~s~Dg~i  289 (337)
T d1gxra_         225 -----SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----Y----QLHLHESCVLSLKFAY-CGKWFVSTGKDNLL  289 (337)
T ss_dssp             -----SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----E----EECCCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred             -----cceEEEEEcccccccceecccccccccccccccc-----c----cccccccccceEEECC-CCCEEEEEeCCCeE
Confidence                 289999999999999965 999999999986421     1    1156788899999999 77799999999999


Q ss_pred             EEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          248 AIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       248 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      ++||+.+++++..+. |...|++++|+|++++|++|+ .||+|+|||+
T Consensus       290 ~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s-~D~~I~vWdl  335 (337)
T d1gxra_         290 NAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGS-GDKKATVYEV  335 (337)
T ss_dssp             EEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEE-TTSCEEEEEE
T ss_pred             EEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEE
Confidence            999999999888776 788999999999999999999 9999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.9e-34  Score=232.28  Aligned_cols=212  Identities=17%  Similarity=0.212  Sum_probs=171.6

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      +.++|+|++|+|+|++||+|+.||.|+|||+.+++..               .......|..+|.+++|       +|++
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~---------------~~~~l~gH~~~V~~l~f-------sp~~   63 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV---------------QVHELKEHNGQVTGVDW-------APDS   63 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE---------------EEEEEECCSSCEEEEEE-------ETTT
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE---------------EEEEecCCCCCEEEEEE-------CCCC
Confidence            4578999999999999999999999999998643211               11233457789999988       6789


Q ss_pred             cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeecc
Q 022019          139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN  217 (304)
Q Consensus       139 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~  217 (304)
                      ++|++|+.|+.|++||+.++.....+....   +...|.+++|+|+++.++++ .|+.|++|++.......    .....
T Consensus        64 ~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~---~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~----~~~~~  136 (371)
T d1k8kc_          64 NRIVTCGTDRNAYVWTLKGRTWKPTLVILR---INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW----VCKHI  136 (371)
T ss_dssp             TEEEEEETTSCEEEEEEETTEEEEEEECCC---CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE----EEEEE
T ss_pred             CEEEEEECCCeEEEEeeccccccccccccc---ccccccccccccccccceeecccCcceeeeeecccccc----ccccc
Confidence            999999999999999998877655544322   23389999999999999965 99999999997643221    22222


Q ss_pred             ccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc------------------eEeEEeccccCCeEEEEECCCCcE
Q 022019          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM------------------ELLYVLHGQEGGVTHVQFSRDGNY  279 (304)
Q Consensus       218 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~  279 (304)
                      ...|...|.+++|+| ++.+|++|+.|+.|++||....                  ..+....+|...|.+++|+|+|++
T Consensus       137 ~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  215 (371)
T d1k8kc_         137 KKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR  215 (371)
T ss_dssp             CTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred             ccccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc
Confidence            356788899999999 7789999999999999997532                  355667788999999999999999


Q ss_pred             EEEeeccCCeEEEEecccceee
Q 022019          280 LYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       280 l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      |++++ .|+.|++||+.+++.+
T Consensus       216 l~s~~-~d~~i~iwd~~~~~~~  236 (371)
T d1k8kc_         216 VAWVS-HDSTVCLADADKKMAV  236 (371)
T ss_dssp             EEEEE-TTTEEEEEEGGGTTEE
T ss_pred             ccccc-cCCcceEEeeecccce
Confidence            99999 9999999999988665

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.3e-34  Score=224.60  Aligned_cols=232  Identities=13%  Similarity=0.159  Sum_probs=163.9

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccc--------ccccccC-------C---------
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA--------CSLAKDQ-------D---------  108 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--------~~~~~~~-------~---------  108 (304)
                      .+.+.||.++|++++|+|+|++|+||+.||+|++||+.++........        ..+.++.       +         
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccC
Confidence            458899999999999999999999999999999999987654222110        0000000       0         


Q ss_pred             ----ccceEEEeecCCeEEEEeecC------------------------------ccceeCCCccEEEEEeCCCCEEEEE
Q 022019          109 ----SYEASLVVTEGESVYDFCWFP------------------------------HMSASDPTSCVFASTTRDHPIHLWD  154 (304)
Q Consensus       109 ----~~~~~~~~~~~~~v~~~~~~~------------------------------~~~~~~~~~~~l~~~~~dg~i~i~d  154 (304)
                          .........+...+..++|.|                              ..++++|+++++++|+.||.|++||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d  164 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK  164 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                000011111222333333322                              2356789999999999999999999


Q ss_pred             cCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecC
Q 022019          155 ATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT  233 (304)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  233 (304)
                      +++++.......    .+...|.+++|+|++++++++ .|+.|++||+.....     ........+|..+|++++|+| 
T Consensus       165 ~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----~~~~~~~~~h~~~v~~l~~s~-  234 (299)
T d1nr0a2         165 LSGASVSEVKTI----VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE-----LAHTNSWTFHTAKVACVSWSP-  234 (299)
T ss_dssp             EETTEEEEEEEE----ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE-----ESCCCCCCCCSSCEEEEEECT-
T ss_pred             cccccccccccc----ccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccc-
Confidence            988765443221    223389999999999999965 999999999976321     111223366888999999999 


Q ss_pred             CCcEEEEEecCCeEEEEecCCceE--eEEecccc-CCeEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          234 HTGMLAIGSYSQTSAIYREDNMEL--LYVLHGQE-GGVTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       234 ~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      ++.+|++|+.||.|++||++++..  ......|. ..+.++.| +++.+|++++ .|+.|++||+.
T Consensus       235 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s-~D~~i~iWdl~  298 (299)
T d1nr0a2         235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAG-QDSNIKFWNVP  298 (299)
T ss_dssp             TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEE-TTSCEEEEECC
T ss_pred             cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEe-CCCEEEEEecc
Confidence            778999999999999999987643  33333443 45666655 5678999999 99999999983

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-33  Score=222.03  Aligned_cols=214  Identities=14%  Similarity=0.211  Sum_probs=172.5

Q ss_pred             ceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      +.++.+ .|...|++++|+|+|++|+||+ ||.|+|||+.+.......            .......|...|.+++|   
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~------------~~~~~~~h~~~I~~v~~---  105 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV------------SQLDCLNRDNYIRSCKL---  105 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS------------EEEECSCTTSBEEEEEE---
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccccee------------EEeeecCCCCcEEEEEE---
Confidence            334444 7999999999999999999987 899999999865332111            11122356678999988   


Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCee--eEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcc
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRD  207 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~  207 (304)
                          +|++++|++|+.||.|++||+.....  ...+..+.     ..+..+.|+|++.+++++ .|+.|++||++...  
T Consensus       106 ----s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~--  174 (337)
T d1gxra_         106 ----LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA-----PACYALAISPDSKVCFSCCSDGNIAVWDLHNQT--  174 (337)
T ss_dssp             ----CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS-----SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--
T ss_pred             ----cCCCCEEEEeeccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccc--
Confidence                77999999999999999999875543  34444333     388999999999999965 99999999998631  


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccC
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD  287 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d  287 (304)
                            ......+|...+.+++|+| ++..+++|+.|+.|++||+++++.+..+. |...|.+++|+|++.+|++++ .|
T Consensus       175 ------~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~-~d  245 (337)
T d1gxra_         175 ------LVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ES  245 (337)
T ss_dssp             ------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TT
T ss_pred             ------ccccccccccccccccccc-cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceec-cc
Confidence                  1122256778899999999 77799999999999999999999888775 788999999999999999999 99


Q ss_pred             CeEEEEecccceee
Q 022019          288 PYILCWDLRKAVQV  301 (304)
Q Consensus       288 ~~i~vwd~~~~~~~  301 (304)
                      +.|++||+++++..
T Consensus       246 ~~i~i~d~~~~~~~  259 (337)
T d1gxra_         246 SNVEVLHVNKPDKY  259 (337)
T ss_dssp             SCEEEEETTSSCEE
T ss_pred             cccccccccccccc
Confidence            99999999987654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.3e-33  Score=219.97  Aligned_cols=224  Identities=11%  Similarity=0.170  Sum_probs=174.0

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecC--CCeEEEeeCCCCCCccccccccccccCCccce
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSE--DKTLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (304)
                      .+..|+........    ...+.+|.++|.+++|+|++++|++++.  ++.++||++++++.....              
T Consensus        81 ~i~iwd~~~~~~~~----~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l--------------  142 (311)
T d1nr0a1          81 NVRIWDTTQTTHIL----KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL--------------  142 (311)
T ss_dssp             EEEEEESSSTTCCE----EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC--------------
T ss_pred             eEeeeeeecccccc----ccccccccCccccccccccccccccccccccccccccccccccccccc--------------
Confidence            45566665543321    1256789999999999999999999875  456999999866543222              


Q ss_pred             EEEeecCCeEEEEeecCccceeCCCcc-EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE
Q 022019          113 SLVVTEGESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG  191 (304)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  191 (304)
                         ..|...|.+++|       +|+++ .|++|+.||.|++||+++++....+..+..     .|.++.|+|++++++++
T Consensus       143 ---~~h~~~v~~v~~-------~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~-----~i~~v~~~p~~~~l~~~  207 (311)
T d1nr0a1         143 ---TGQARAMNSVDF-------KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-----FVHSVRYNPDGSLFAST  207 (311)
T ss_dssp             ---CCCSSCEEEEEE-------CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS-----CEEEEEECTTSSEEEEE
T ss_pred             ---cccccccccccc-------cccceeeecccccccccccccccccccccccccccc-----cccccccCccccccccc
Confidence               234577888888       56666 588899999999999999988887776654     89999999999999965


Q ss_pred             -cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC---C
Q 022019          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG---G  267 (304)
Q Consensus       192 -~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~  267 (304)
                       .|+.|++||++... ....+........+|...|++++|+| ++.+|++|+.||.|+|||+++++++.++..|..   .
T Consensus       208 ~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~  285 (311)
T d1nr0a1         208 GGDGTIVLYNGVDGT-KTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ  285 (311)
T ss_dssp             ETTSCEEEEETTTCC-EEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccccCC-CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccce
Confidence             89999999998743 22222222333467888999999999 778999999999999999999999999886643   4


Q ss_pred             eEEEEECCCCcEEEEeeccCCeEEEEecc
Q 022019          268 VTHVQFSRDGNYLYTGGRKDPYILCWDLR  296 (304)
Q Consensus       268 v~~~~~~~~~~~l~~~~~~d~~i~vwd~~  296 (304)
                      +.++.|+  +.+|++++ .||.|++||++
T Consensus       286 ~~~~~~~--~~~l~s~s-~dG~i~~wd~d  311 (311)
T d1nr0a1         286 QLGIIWT--KQALVSIS-ANGFINFVNPE  311 (311)
T ss_dssp             EEEEEEC--SSCEEEEE-TTCCEEEEETT
T ss_pred             EEEEEec--CCEEEEEE-CCCEEEEEeCC
Confidence            5556554  56799999 99999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.8e-33  Score=225.92  Aligned_cols=249  Identities=18%  Similarity=0.345  Sum_probs=169.2

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccC-CccceEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ-DSYEASL  114 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~  114 (304)
                      ...|+......+.  ..+....+|.+.|+||+|+|||++||+|+ |++|+|||+.++............... .......
T Consensus        40 ~~~~~~~~~~~~~--~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (388)
T d1erja_          40 YILYNPALPREID--VELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS  116 (388)
T ss_dssp             EEEECTTSCCCEE--EEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------------
T ss_pred             EEEeCCCCCccee--eeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccccccccc
Confidence            4456654333322  12223346999999999999999999987 899999999887765443322211111 1111122


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  193 (304)
                      ...+...|.+++|       +|++++|++|+.||.|++||...++.......+..     .|.++.+++++..++++ .+
T Consensus       117 ~~~~~~~V~~l~~-------s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~~~~~~  184 (388)
T d1erja_         117 SPSSDLYIRSVCF-------SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ-----DIYSLDYFPSGDKLVSGSGD  184 (388)
T ss_dssp             --CCCCBEEEEEE-------CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETT
T ss_pred             ccCCCCCEEEEEE-------CCCCCcceecccccccccccccccccccccccccc-----cccccccccccccccccccc
Confidence            3345677888888       77999999999999999999999888777665543     66666666666655533 66


Q ss_pred             CeEEEEEcCCCC-----------------------------------------ccceeeeeeeccccccccceeEEEeec
Q 022019          194 KSVRVFDVHRPG-----------------------------------------RDFEKYSTLKGNKEGQAGIMSAIAFSP  232 (304)
Q Consensus       194 ~~i~v~d~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~v~~~~~~p  232 (304)
                      +.+++||.+...                                         .....+........+|...|.+++|+|
T Consensus       185 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  264 (388)
T d1erja_         185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR  264 (388)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT
T ss_pred             eeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC
Confidence            666666654321                                         000111111112245777899999999


Q ss_pred             CCCcEEEEEecCCeEEEEecCCce------------EeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          233 THTGMLAIGSYSQTSAIYREDNME------------LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       233 ~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                       ++.+|++|+.||.|++||++++.            .......|...|.+++|+|+|++|++|+ .||.|++||++++++
T Consensus       265 -~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~vwd~~~~~~  342 (388)
T d1erja_         265 -DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLFWDKKSGNP  342 (388)
T ss_dssp             -TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEEEETTTCCE
T ss_pred             -CCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe-CCCEEEEEECCCCcE
Confidence             77899999999999999987553            2344557888999999999999999999 999999999999877


Q ss_pred             e
Q 022019          301 V  301 (304)
Q Consensus       301 ~  301 (304)
                      +
T Consensus       343 ~  343 (388)
T d1erja_         343 L  343 (388)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-33  Score=228.63  Aligned_cols=219  Identities=15%  Similarity=0.219  Sum_probs=169.8

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ...+.+|.++|++|+|+|++++|++|+.|++|+|||+.++....               ......+...|.+++|     
T Consensus        44 ~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~---------------~~~~~~~~~~v~~i~~-----  103 (371)
T d1k8kc_          44 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP---------------TLVILRINRAARCVRW-----  103 (371)
T ss_dssp             EEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE---------------EEECCCCSSCEEEEEE-----
T ss_pred             EEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccc---------------cccccccccccccccc-----
Confidence            44778999999999999999999999999999999987542211               1122345678899888     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcccee-
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK-  210 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~-  210 (304)
                        +|+++.|++++.|+.|++|++............. ..+...|.+++|+|++++|+++ .|+.|++||+......... 
T Consensus       104 --~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~  180 (371)
T d1k8kc_         104 --APNEKKFAVGSGSRVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA  180 (371)
T ss_dssp             --CTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred             --ccccccceeecccCcceeeeeecccccccccccc-cccccccccccccccccceeccccCcEEEEEeeccCccccccc
Confidence              7789999999999999999987665433322211 1234489999999999999965 9999999998753211100 


Q ss_pred             ---------eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEE
Q 022019          211 ---------YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLY  281 (304)
Q Consensus       211 ---------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  281 (304)
                               ..........|...|.+++|+| ++.+|++++.|+.|++||+..+.++..+..|..+|.+++|+|++++|+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la  259 (371)
T d1k8kc_         181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVA  259 (371)
T ss_dssp             CBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred             cccccccccceeeeeeccCccCcEEEEEeec-ccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEE
Confidence                     0112223356778899999999 677999999999999999999999999999999999999999998887


Q ss_pred             EeeccCCeEEEEeccc
Q 022019          282 TGGRKDPYILCWDLRK  297 (304)
Q Consensus       282 ~~~~~d~~i~vwd~~~  297 (304)
                      +|.  |+.+++|....
T Consensus       260 ~g~--d~~~~~~~~~~  273 (371)
T d1k8kc_         260 AGH--DCFPVLFTYDS  273 (371)
T ss_dssp             EET--TSSCEEEEEET
T ss_pred             EEc--CCceEEEEeeC
Confidence            654  77777766554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-32  Score=224.69  Aligned_cols=235  Identities=20%  Similarity=0.348  Sum_probs=165.6

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccccc-------ccccC--------C---------cc
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS-------LAKDQ--------D---------SY  110 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-------~~~~~--------~---------~~  110 (304)
                      ...+|...|++++|+|+|++|++|+.||.|++||...+..........       .....        .         ..
T Consensus       116 ~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  195 (388)
T d1erja_         116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  195 (388)
T ss_dssp             ---CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccc
Confidence            345788899999999999999999999999999998765432221110       00000        0         00


Q ss_pred             ceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccc--ccccccceEEEEECCCCcEE
Q 022019          111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD--AVDEITAAFSVAFNPTGTKI  188 (304)
Q Consensus       111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l  188 (304)
                      .......+......+.+      +.+++.+|++++.||.|++||+.++.....+....  ...+...|.+++|+|++++|
T Consensus       196 ~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  269 (388)
T d1erja_         196 QCSLTLSIEDGVTTVAV------SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV  269 (388)
T ss_dssp             EEEEEEECSSCEEEEEE------CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccc------cCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEE
Confidence            00011111112222222      24578899999999999999999988776654322  12345589999999999999


Q ss_pred             EEE-cCCeEEEEEcCCCCcccee----eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc
Q 022019          189 FAG-YNKSVRVFDVHRPGRDFEK----YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG  263 (304)
Q Consensus       189 ~~~-~d~~i~v~d~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  263 (304)
                      +++ .|+.|++||++........    ..........|...|.+++|+| ++.+|++|+.||.|++||+++++++.++.+
T Consensus       270 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~  348 (388)
T d1erja_         270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQG  348 (388)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEEEEEeC
Confidence            965 9999999999764322111    0111122345778899999999 788999999999999999999999999999


Q ss_pred             ccCCeEEEEE------CCCCcEEEEeeccCCeEEEEeccc
Q 022019          264 QEGGVTHVQF------SRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       264 ~~~~v~~~~~------~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      |.+.|+++++      +|++.+|++|+ .||+|+||+++.
T Consensus       349 H~~~V~~~~~~~~~~~spd~~~l~s~s-~Dg~I~iW~~~k  387 (388)
T d1erja_         349 HRNSVISVAVANGSSLGPEYNVFATGS-GDCKARIWKYKK  387 (388)
T ss_dssp             CSSCEEEEEECSSCTTCTTCEEEEEEE-TTSEEEEEEEEE
T ss_pred             CCCCEEEEEEecCcccCCCCCEEEEEe-CCCEEEEEeeee
Confidence            9999999975      67999999999 999999999853

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-32  Score=216.76  Aligned_cols=221  Identities=14%  Similarity=0.155  Sum_probs=172.7

Q ss_pred             eeecCC-CCceeEEEEcC--CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           54 RTSSIP-NNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        54 ~~~~~h-~~~V~~i~~s~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      ..+.+| ...|++++|+|  +|.+|++|+.||+|+|||+..+.........         .......+..+|.+++|   
T Consensus        56 ~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~---------~~~~~~~~~~~v~~v~~---  123 (325)
T d1pgua1          56 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN---------VKSEFQVLAGPISDISW---  123 (325)
T ss_dssp             EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE---------EEEEEECCSSCEEEEEE---
T ss_pred             EEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecc---------cccccccccCcEEEEEE---
Confidence            356677 46899999998  6789999999999999998755432221111         11122345678888888   


Q ss_pred             cceeCCCccEEEEEeC--CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEE-EE-EcCCeEEEEEcCCCCc
Q 022019          131 MSASDPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI-FA-GYNKSVRVFDVHRPGR  206 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~-~~d~~i~v~d~~~~~~  206 (304)
                          +++++++++++.  ++.+.+|++.+++....+..|..     .|.+++|+|++.++ ++ +.|+.+++||+.... 
T Consensus       124 ----s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~-  193 (325)
T d1pgua1         124 ----DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ-----RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-  193 (325)
T ss_dssp             ----CTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS-----CEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-
T ss_pred             ----CCCCCccceeeccccceEEEEeecccccceeeeeccc-----ccccccccccccceEEEeecccccccccccccc-
Confidence                778888887764  67899999999988888776554     89999999998764 44 489999999986521 


Q ss_pred             cceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEEC---CCCcEEEEe
Q 022019          207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS---RDGNYLYTG  283 (304)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~  283 (304)
                          ..........|...|.+++|+|+.+.+|++|+.||.|++||+++++.+..+.+|...+.++.|+   |+|++|+++
T Consensus       194 ----~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~  269 (325)
T d1pgua1         194 ----FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATV  269 (325)
T ss_dssp             ----EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEE
T ss_pred             ----cceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEE
Confidence                1122223356778899999999778899999999999999999999999999888877665555   689999999


Q ss_pred             eccCCeEEEEecccceee
Q 022019          284 GRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       284 ~~~d~~i~vwd~~~~~~~  301 (304)
                      + .|+.|+|||+++++.+
T Consensus       270 s-~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         270 G-ADATIRVWDVTTSKCV  286 (325)
T ss_dssp             E-TTSEEEEEETTTTEEE
T ss_pred             e-CCCeEEEEECCCCCEE
Confidence            9 9999999999998765

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-30  Score=210.38  Aligned_cols=240  Identities=15%  Similarity=0.160  Sum_probs=159.2

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccccccc----------------------------
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLA----------------------------  104 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~----------------------------  104 (304)
                      ....++|.+.|.++++++  ++|+||+.|++|+|||................                            
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            346789999999999864  69999999999999997654421111100000                            


Q ss_pred             ccCCccceEEEee--------------------cCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCe-----
Q 022019          105 KDQDSYEASLVVT--------------------EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-----  159 (304)
Q Consensus       105 ~~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----  159 (304)
                      ...+.........                    +...+..++|.+..  ..+.+.++++++.||.+++|++....     
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN--DRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCC--CcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            0000000000000                    00112223332211  02235789999999999999985321     


Q ss_pred             --------eeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEe
Q 022019          160 --------LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF  230 (304)
Q Consensus       160 --------~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  230 (304)
                              ............+...+++++|+|++ +|++| .|++|++||+++.. .... ........+|..+|.+++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~-~~~~-~~~~~~l~~h~~~V~~l~~  239 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-PLYN-FESQHSMINNSNSIRSVKF  239 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-EEEE-EECCC---CCCCCEEEEEE
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccc-cccc-cccccccccccceEEEccc
Confidence                    00111111112233468899999998 66655 99999999998642 2111 1222344678899999999


Q ss_pred             ecCCCcEEEEEecCC---eEEEEecCCceEeEEec-------------cccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          231 SPTHTGMLAIGSYSQ---TSAIYREDNMELLYVLH-------------GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       231 ~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      +| ++.+|++|+.|+   .|++||+++++++..+.             +|...|++++|+|+|++|++++ .|++|++||
T Consensus       240 sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s-~D~~v~vWd  317 (393)
T d1sq9a_         240 SP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWD  317 (393)
T ss_dssp             CS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEE
T ss_pred             cc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC-CCCEEEEEE
Confidence            99 788999999987   49999999988777764             7999999999999999999999 999999999


Q ss_pred             cccceee
Q 022019          295 LRKAVQV  301 (304)
Q Consensus       295 ~~~~~~~  301 (304)
                      +++++++
T Consensus       318 ~~~g~~~  324 (393)
T d1sq9a_         318 VKTKERI  324 (393)
T ss_dssp             TTTTEEE
T ss_pred             CCCCCEE
Confidence            9999765

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=7.9e-31  Score=205.11  Aligned_cols=228  Identities=17%  Similarity=0.218  Sum_probs=159.4

Q ss_pred             ceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccc--cccccccC---------------------
Q 022019           51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVN--ACSLAKDQ---------------------  107 (304)
Q Consensus        51 ~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~~~~---------------------  107 (304)
                      +.++++.||.++|++++|+|    |+||+.||+|++||+.+........  ........                     
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~~   79 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEF   79 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEEC
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeecccccccccccccc
Confidence            45668889999999999987    8999999999999887543211100  00000000                     


Q ss_pred             --------------------CccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCC-CEEEEEcCCCeeeEEeec
Q 022019          108 --------------------DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH-PIHLWDATTGLLRCTYRA  166 (304)
Q Consensus       108 --------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~  166 (304)
                                          ..............+..+.+.....++++++..+++++.++ .+++|++...+....+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~  159 (287)
T d1pgua2          80 GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT  159 (287)
T ss_dssp             SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSS
T ss_pred             ccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeeeee
Confidence                                00000000111112333333344455677788888887765 799999876554444332


Q ss_pred             ccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecC---------CCc
Q 022019          167 YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT---------HTG  236 (304)
Q Consensus       167 ~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---------~~~  236 (304)
                          .+...+.+++|+|++.+|++| .||.|++||+...       ........+|..+|.+++|+|.         ++.
T Consensus       160 ----~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~-------~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~  228 (287)
T d1pgua2         160 ----PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR-------EVKTSRWAFRTSKINAISWKPAEKGANEEEIEED  228 (287)
T ss_dssp             ----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------EEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred             ----ccCCceeEEEeccCccccccccccccccceeeccc-------ccccccccccccccceeeecccccccccccCCCC
Confidence                222379999999999999976 9999999999764       2222334678889999999983         346


Q ss_pred             EEEEEecCCeEEEEecCC-ceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          237 MLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       237 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      ++++|+.|+.|++||++. .+.+..+.+|...|++++|+|++ .|++++ .|++|++|++
T Consensus       229 ~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g-~D~~v~iW~i  286 (287)
T d1pgua2         229 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSG-ADACIKRWNV  286 (287)
T ss_dssp             EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEE-TTSCEEEEEE
T ss_pred             eeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEE-CCCeEEEEEE
Confidence            899999999999999876 55777788999999999999987 588888 8999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.6e-30  Score=204.75  Aligned_cols=147  Identities=17%  Similarity=0.253  Sum_probs=117.0

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      .+++..+++++.||.|++||++.++....+..+..     .+.++.+++  ++++++ .|+.|++||+.....    ...
T Consensus       184 ~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~-----~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~----~~~  252 (342)
T d2ovrb2         184 QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-----LTSGMELKD--NILVSGNADSTVKIWDIKTGQC----LQT  252 (342)
T ss_dssp             EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCS-----CEEEEEEET--TEEEEEETTSCEEEEETTTCCE----EEE
T ss_pred             cCCCCEEEEEeCCCeEEEeecccceeeeEeccccc-----ceeEEecCC--CEEEEEcCCCEEEEEecccccc----ccc
Confidence            45778899999999999999999988887776654     777887765  577755 999999999976421    111


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-----cccCCeEEEEECCCCcEEEEeeccCC
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-----GQEGGVTHVQFSRDGNYLYTGGRKDP  288 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~~d~  288 (304)
                      + .....|...+.++.++|   .++++|+.||.|++||+++++++..+.     +|...|++++|+|++.+|++|+ .||
T Consensus       253 ~-~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~-~dG  327 (342)
T d2ovrb2         253 L-QGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS-RNG  327 (342)
T ss_dssp             E-CSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC-SSS
T ss_pred             c-cccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEe-CCC
Confidence            1 22244566677777765   489999999999999999999888774     5777899999999999999998 888


Q ss_pred             e----EEEEeccc
Q 022019          289 Y----ILCWDLRK  297 (304)
Q Consensus       289 ~----i~vwd~~~  297 (304)
                      +    |++||+..
T Consensus       328 t~~~~l~~~Df~~  340 (342)
T d2ovrb2         328 TEETKLLVLDFDV  340 (342)
T ss_dssp             SSCCEEEEEECCC
T ss_pred             CCeeEEEEEeCCC
Confidence            5    99999864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.5e-29  Score=200.21  Aligned_cols=223  Identities=16%  Similarity=0.195  Sum_probs=148.2

Q ss_pred             eeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcc
Q 022019           52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        52 ~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      .+....+|++.|++|+|+|++++||+|+.||+|+|||+......              ........|..+|.+++|.|. 
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~--------------~~~~~~~~h~~~V~~v~f~~~-   67 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--------------VDLLQSLRYKHPLLCCNFIDN-   67 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE--------------EEEEEEEECSSCEEEEEEEES-
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc--------------eEEEEecCCCCCEEEEEEeCC-
Confidence            45577899999999999999999999999999999998754321              112234468889999999543 


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCcccee
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK  210 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~  210 (304)
                           ++.+|++|+.||.|++|++..+...........    .......+.++...++ ++.++.+++||++........
T Consensus        68 -----~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~  138 (342)
T d1yfqa_          68 -----TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEA----NLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIA  138 (342)
T ss_dssp             -----SSEEEEEEETTSCEEEECSSSSSSEEECBSCCC----CSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred             -----CCCEEEEcccccceeeeeccccccccccccccc----ccccccccccccccccccccccccceeeccccccceee
Confidence                 456899999999999999988776655544332    1334455556666666 559999999998753322221


Q ss_pred             eeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-----------------------------------
Q 022019          211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-----------------------------------  255 (304)
Q Consensus       211 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-----------------------------------  255 (304)
                      ......  .........+.+.+ .+..+++++.|+.|++||++..                                   
T Consensus       139 ~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  215 (342)
T d1yfqa_         139 VKNLNS--NNTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID  215 (342)
T ss_dssp             EEESCS--SSSSSCCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT
T ss_pred             eccccc--ccccceeeeeeeec-cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCC
Confidence            111111  01111122333344 3334455555555555554321                                   


Q ss_pred             -----------eE---------eE------EeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          256 -----------EL---------LY------VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       256 -----------~~---------~~------~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                                 ..         ..      ...+|...|++++|+|++++|++|+ .||.|++||+++++++.
T Consensus       216 g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~-~Dg~v~vWD~~~~~~l~  287 (342)
T d1yfqa_         216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE-TTSCEEEEETTTTEEEE
T ss_pred             CeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEEC-CCCEEEEEECCCCcEEE
Confidence                       10         00      0113445789999999999999999 99999999999987763

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.9e-28  Score=193.88  Aligned_cols=204  Identities=11%  Similarity=0.097  Sum_probs=151.8

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecC--CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSE--DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ....|.++|.+++|++++++|++++.  ++.+++|+++++.....                 ...|...|.+++|     
T Consensus       110 ~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~h~~~v~~~~~-----  167 (325)
T d1pgua1         110 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE-----------------VSGHSQRINACHL-----  167 (325)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEE-----------------CCSCSSCEEEEEE-----
T ss_pred             ccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccccee-----------------eeecccccccccc-----
Confidence            45689999999999999999887654  67899999876543221                 2235678889888     


Q ss_pred             eeCCCcc-EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCC-CcEEEEE-cCCeEEEEEcCCCCccce
Q 022019          133 ASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       133 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~-~d~~i~v~d~~~~~~~~~  209 (304)
                        +|++. .+++++.|+.+++||+...+.......+.  .+...|.+++|+|+ +.+++++ .|+.|++||++...    
T Consensus       168 --~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~--~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~----  239 (325)
T d1pgua1         168 --KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH--KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE----  239 (325)
T ss_dssp             --CSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS--CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC----
T ss_pred             --cccccceEEEeecccccccccccccccceeccccc--CCCCccEEeeeccccceeccccccccceeeeeecccc----
Confidence              44554 57889999999999998887766655433  34457999999997 5777755 99999999998642    


Q ss_pred             eeeeeeccccccccceeEEEee---cCCCcEEEEEecCCeEEEEecCCceEeEEeccccCC--eE--EEEECCCCcEEEE
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFS---PTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG--VT--HVQFSRDGNYLYT  282 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~---p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--v~--~~~~~~~~~~l~~  282 (304)
                      ....+    .+|..++.++.|+   | ++.+|++++.|+.|+|||+++++++..+..|...  +.  ++.|.++ .+|++
T Consensus       240 ~~~~l----~~~~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s  313 (325)
T d1pgua1         240 FLKYI----EDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIIS  313 (325)
T ss_dssp             EEEEC----CBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET-TEEEE
T ss_pred             ccccc----cccccccccceeeeecc-CCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC-CEEEE
Confidence            22222    4455555544444   4 5678999999999999999999999888766543  33  4444443 47889


Q ss_pred             eeccCCeEEEEec
Q 022019          283 GGRKDPYILCWDL  295 (304)
Q Consensus       283 ~~~~d~~i~vwd~  295 (304)
                      ++ .||.|++||+
T Consensus       314 ~s-~dg~i~vwdl  325 (325)
T d1pgua1         314 LS-LDGTLNFYEL  325 (325)
T ss_dssp             EE-TTSCEEEEET
T ss_pred             EE-CCCEEEEEEC
Confidence            99 9999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.9e-27  Score=186.18  Aligned_cols=215  Identities=14%  Similarity=0.243  Sum_probs=162.7

Q ss_pred             eeecCCCCce-eEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           54 RTSSIPNNFL-KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        54 ~~~~~h~~~V-~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      .+++||.+.| +|++|  ++++||||+.||+|+|||+.+++..                 .....|...|.+++|     
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~-----------------~~l~~H~~~V~~l~~-----   61 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFL-----------------LQLSGHDGGVWALKY-----   61 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEE-----------------EEEECCSSCEEEEEE-----
T ss_pred             EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEE-----------------EEEECCCCCEEEEEE-----
Confidence            3788998876 66665  6789999999999999999865432                 233457789999988     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCcccee-
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK-  210 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~-  210 (304)
                        +|+ .+|++|+.||.|++|++...+..........   ........+++++.+++++ .|+.|++||++........ 
T Consensus        62 --s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~  135 (355)
T d1nexb2          62 --AHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNS---TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG  135 (355)
T ss_dssp             --ETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSS---CEEEEEEEEETTEEEEEEEETTSEEEEEECCC--------
T ss_pred             --cCC-CEEEEEecccccccccccccccccccccccc---cccccccccccccceeeeecCCCcEEEEEccCCceecccc
Confidence              443 4799999999999999998877655544332   1245567778888888855 8999999998653210000 


Q ss_pred             -----------------------------------------------ee-------eeeccccccccceeEEEeecCCCc
Q 022019          211 -----------------------------------------------YS-------TLKGNKEGQAGIMSAIAFSPTHTG  236 (304)
Q Consensus       211 -----------------------------------------------~~-------~~~~~~~~~~~~v~~~~~~p~~~~  236 (304)
                                                                     +.       .......++...+.++.|+| .+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~  214 (355)
T d1nexb2         136 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERK  214 (355)
T ss_dssp             ---CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTT
T ss_pred             ccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccc-cce
Confidence                                                           00       00011233455678899999 777


Q ss_pred             EEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       237 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      .+++++.|+.|++||++++.++..+.+|...|.+++|+  +++|++++ .||.|++||++++.+.+
T Consensus       215 ~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~-~dg~i~iwd~~~~~~~~  277 (355)
T d1nexb2         215 RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA-ADGSIRGWDANDYSRKF  277 (355)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEEC-TTSEEEEEETTTCCEEE
T ss_pred             eeecccccceEEeeeccccccccccccccccccccccc--cceeeeee-cccccccccccccceec
Confidence            99999999999999999999999999999999999997  46899999 99999999999876653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.2e-26  Score=184.10  Aligned_cols=240  Identities=10%  Similarity=0.185  Sum_probs=162.9

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccc------cCC
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK------DQD  108 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~------~~~  108 (304)
                      .+..|+....+.      +..+.+|.++|++++|+|+ .+|++|+.||+|++|++................      ...
T Consensus        34 ~i~vWd~~~~~~------~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (355)
T d1nexb2          34 MIRVYDSINKKF------LLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK  106 (355)
T ss_dssp             EEEEEETTTTEE------EEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEET
T ss_pred             eEEEEECCCCcE------EEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccccccccccccc
Confidence            355566665443      3478899999999999985 589999999999999998765321111100000      000


Q ss_pred             ccceEEEeecCCeEEEE----------------------------------eecC-ccceeCCCccEEEEEeCCCCEEEE
Q 022019          109 SYEASLVVTEGESVYDF----------------------------------CWFP-HMSASDPTSCVFASTTRDHPIHLW  153 (304)
Q Consensus       109 ~~~~~~~~~~~~~v~~~----------------------------------~~~~-~~~~~~~~~~~l~~~~~dg~i~i~  153 (304)
                      .............+.-.                                  ..+. ......+++++++++..|+.|++|
T Consensus       107 ~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~  186 (355)
T d1nexb2         107 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW  186 (355)
T ss_dssp             TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred             ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeee
Confidence            00000000111111100                                  0000 011234567899999999999999


Q ss_pred             EcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeec
Q 022019          154 DATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP  232 (304)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  232 (304)
                      |+.+++.......+..     .+.++.|+|++..++++ .|+.|++||+++..        ......+|...|.+++|+|
T Consensus       187 d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--------~~~~~~~h~~~v~~~~~~~  253 (355)
T d1nexb2         187 DVAQMKCLYILSGHTD-----RIYSTIYDHERKRCISASMDTTIRIWDLENGE--------LMYTLQGHTALVGLLRLSD  253 (355)
T ss_dssp             ETTTTEEEEEECCCSS-----CEEEEEEETTTTEEEEEETTSCEEEEETTTCC--------EEEEECCCSSCCCEEEECS
T ss_pred             ecccccceeeeecccc-----ccccccccccceeeecccccceEEeeeccccc--------ccccccccccccccccccc
Confidence            9999988777665544     78899999999999965 99999999998732        1222367888899999976


Q ss_pred             CCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEE-EECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          233 THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV-QFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       233 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                         .+|++|+.||.|++||+++.....  ..|...+.++ .+++++.+|++|  .||.|++||+++++.+
T Consensus       254 ---~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g--~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         254 ---KFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSG--SENQFNIYNLRSGKLV  316 (355)
T ss_dssp             ---SEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSSEEEEE--ETTEEEEEETTTCCBC
T ss_pred             ---ceeeeeecccccccccccccceec--ccccCCceEEEEEcCCCCEEEEE--eCCEEEEEECCCCCEE
Confidence               389999999999999998876544  4455555555 456777766655  5899999999998765

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4e-27  Score=192.09  Aligned_cols=201  Identities=9%  Similarity=0.133  Sum_probs=137.2

Q ss_pred             CCCCceeEEEEcCC-----CCeEEEecCCCeEEEeeCCCCCCccccccccccccCC-ccceEEEeecCCeEEEEeecCcc
Q 022019           58 IPNNFLKGIKWSPD-----GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQD-SYEASLVVTEGESVYDFCWFPHM  131 (304)
Q Consensus        58 ~h~~~V~~i~~s~~-----~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~  131 (304)
                      .+...+..++|.++     +.++++++.||++++|++................... .........+...+.+++|    
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----  192 (393)
T d1sq9a_         117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI----  192 (393)
T ss_dssp             GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE----
T ss_pred             cCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEE----
Confidence            45667888888875     4589999999999999986433211110000000000 0000000111223444544    


Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccc-ccccccceEEEEECCCCcEEEEE-cCC---eEEEEEcCCCCc
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD-AVDEITAAFSVAFNPTGTKIFAG-YNK---SVRVFDVHRPGR  206 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~-~d~---~i~v~d~~~~~~  206 (304)
                         +|++ +|++|+.||+|++||+.+++....+.... ...|...|.+++|+|++++|++| .|+   .|++||++.+..
T Consensus       193 ---s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~  268 (393)
T d1sq9a_         193 ---SERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER  268 (393)
T ss_dssp             ---CTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             ---CCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccccccee
Confidence               7777 78999999999999999998877665433 23456699999999999999965 665   599999987432


Q ss_pred             cceeee------eeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCe
Q 022019          207 DFEKYS------TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV  268 (304)
Q Consensus       207 ~~~~~~------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v  268 (304)
                       ...+.      .......+|...|++++|+| ++.+|++|+.|++|+|||+++++++.++.+|...|
T Consensus       269 -~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v  334 (393)
T d1sq9a_         269 -IGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI  334 (393)
T ss_dssp             -EEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC
T ss_pred             -eeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcc
Confidence             11111      11223467999999999999 78899999999999999999999999999987544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.1e-26  Score=178.43  Aligned_cols=221  Identities=16%  Similarity=0.236  Sum_probs=152.9

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccc----------
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK----------  105 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~----------  105 (304)
                      +..|+....+.      ++.+.+|.+.|++++|  ++++|++|+.||.|++|++..+.............          
T Consensus        37 i~vWd~~~~~~------~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (293)
T d1p22a2          37 IKIWDKNTLEC------KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMM  108 (293)
T ss_dssp             EEEEESSSCCE------EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEE
T ss_pred             EEEEECCCCcE------EEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccce
Confidence            44555554433      3478899999999987  57899999999999999998765422211110000          


Q ss_pred             ---c-------------CCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccc
Q 022019          106 ---D-------------QDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA  169 (304)
Q Consensus       106 ---~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  169 (304)
                         .             ...........+...+....+         ....+++++.|+.|++||+++++....+..+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~  179 (293)
T d1p22a2         109 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---------DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR  179 (293)
T ss_dssp             EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---------ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             eecccccceeEeecccccccccccccccccccccccee---------cccccccccCCCceeeecCCCCcEEEEEccccc
Confidence               0             000001111222233333333         445788999999999999999998888776554


Q ss_pred             cccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEE
Q 022019          170 VDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSA  248 (304)
Q Consensus       170 ~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~  248 (304)
                           .+..+.++  +..++++ .|+.|++||++....        .....++...+..  +++ ++.+|++|+.||.|+
T Consensus       180 -----~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~v~~--~~~-~~~~l~sg~~dg~i~  241 (293)
T d1p22a2         180 -----GIACLQYR--DRLVVSGSSDNTIRLWDIECGAC--------LRVLEGHEELVRC--IRF-DNKRIVSGAYDGKIK  241 (293)
T ss_dssp             -----CEEEEEEE--TTEEEEEETTSCEEEEETTTCCE--------EEEECCCSSCEEE--EEC-CSSEEEEEETTSCEE
T ss_pred             -----ccccccCC--CCeEEEecCCCEEEEEeccccee--------eeeecccceeeee--ccc-cceEEEEEcCCCEEE
Confidence                 67777765  4567755 999999999986321        1112445555554  445 566899999999999


Q ss_pred             EEecCC---------ceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          249 IYREDN---------MELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       249 i~d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      +||+..         ..++..+.+|.+.|++++|+  +.+|++++ .||+|++||
T Consensus       242 iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s-~Dg~i~iWD  293 (293)
T d1p22a2         242 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSS-HDDTILIWD  293 (293)
T ss_dssp             EEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECC-SSSEEEEEC
T ss_pred             EEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEe-cCCEEEEeC
Confidence            999753         24678889999999999995  67899999 999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.3e-24  Score=167.62  Aligned_cols=203  Identities=16%  Similarity=0.284  Sum_probs=137.9

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      +.....|...|+|++|  +|++||||+.||+|+|||+.+++..                 .....|...|.+++|     
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~-----------------~~l~~H~~~V~~v~~-----   63 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK-----------------RILTGHTGSVLCLQY-----   63 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE-----------------EEECCCSSCEEEEEC-----
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEE-----------------EEEecCCCCEeeeec-----
Confidence            3456688899998765  7899999999999999999865432                 233456788988876     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCccceee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~  211 (304)
                          ++++|++|+.|+.|++|++..+...........       ....+.+....++ ++.++.+.+||.......... 
T Consensus        64 ----~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  131 (293)
T d1p22a2          64 ----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE-------AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR-  131 (293)
T ss_dssp             ----CSSEEEEEETTSCEEEEESSSCCEEEEECCCCS-------CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEE-
T ss_pred             ----ccceeeccccccccccccccccccccccccccc-------ccccccccccceeecccccceeEeecccccccccc-
Confidence                567999999999999999998877665554332       2333444455555 559999999999764322111 


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                      .    ....|...+..+.+.+   ..+++++.|+.|++||+++++++..+.++...+..+.++  +.+|++++ .||.|+
T Consensus       132 ~----~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~  201 (293)
T d1p22a2         132 R----VLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIR  201 (293)
T ss_dssp             E----EECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEE
T ss_pred             c----cccccccccccceecc---cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEec-CCCEEE
Confidence            1    1134455555555544   245666667777777777777666666666666666654  44666666 677777


Q ss_pred             EEecccceee
Q 022019          292 CWDLRKAVQV  301 (304)
Q Consensus       292 vwd~~~~~~~  301 (304)
                      +||+++.+.+
T Consensus       202 i~d~~~~~~~  211 (293)
T d1p22a2         202 LWDIECGACL  211 (293)
T ss_dssp             EEETTTCCEE
T ss_pred             EEecccceee
Confidence            7777665543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.4e-24  Score=172.78  Aligned_cols=174  Identities=17%  Similarity=0.336  Sum_probs=143.7

Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-c
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~  192 (304)
                      .+.+|...|++++|       +|++++|++|+.||+|++||+.+++....+..+..     .|.+++|+|++.+++++ .
T Consensus        50 tL~GH~~~I~~l~~-------s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~-----~v~~v~~~~~~~~l~~~~~  117 (340)
T d1tbga_          50 TLRGHLAKIYAMHW-------GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS-----WVMTCAYAPSGNYVACGGL  117 (340)
T ss_dssp             EECCCSSCEEEEEE-------CTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCS-----CEEEEEECTTSSEEEEEET
T ss_pred             EECCCCCCEEEEEE-------CCCCCEEEEEECCCceeeeecccceeEEEEecccc-----cEEeeEeeccceeeeeecc
Confidence            44568899999988       77999999999999999999999999888887665     89999999999999965 9


Q ss_pred             CCeEEEEEcCCCCccceeeeeee-------------------------------------ccccccccceeEEEeecCCC
Q 022019          193 NKSVRVFDVHRPGRDFEKYSTLK-------------------------------------GNKEGQAGIMSAIAFSPTHT  235 (304)
Q Consensus       193 d~~i~v~d~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~v~~~~~~p~~~  235 (304)
                      |+.+++|+.............+.                                     .....+...+....+.+ ..
T Consensus       118 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  196 (340)
T d1tbga_         118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DT  196 (340)
T ss_dssp             TCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TS
T ss_pred             cceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccc-cc
Confidence            99999999865432221111110                                     01112233466777778 77


Q ss_pred             cEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       236 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      .++++|+.|+.|++||+++++++..+.+|...|++++|+|++.+|++++ .||.|++|+++..+.+
T Consensus       197 ~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s-~d~~i~~~~~~~~~~~  261 (340)
T d1tbga_         197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRADQEL  261 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE
T ss_pred             ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeecccccc
Confidence            7999999999999999999999999999999999999999999999999 9999999999987654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.3e-24  Score=174.47  Aligned_cols=170  Identities=14%  Similarity=0.058  Sum_probs=127.6

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCC--eEEEeeCCCCCCccccccccccccCCccce
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEA  112 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  112 (304)
                      .++.|+.......+        .+|...|.+++|+|||++|++++.+.  .|++||+.++...                 
T Consensus        25 ~v~v~d~~~~~~~~--------~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-----------------   79 (360)
T d1k32a3          25 QAFIQDVSGTYVLK--------VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-----------------   79 (360)
T ss_dssp             EEEEECTTSSBEEE--------CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-----------------
T ss_pred             eEEEEECCCCcEEE--------ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-----------------
Confidence            46677776554332        26999999999999999998776543  7999999865431                 


Q ss_pred             EEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-
Q 022019          113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-  191 (304)
Q Consensus       113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-  191 (304)
                       ....+...+..++|       +|++++|++++.++.+++|++.+++....+..+..     .+.+++|+|+|++|+.+ 
T Consensus        80 -~~~~~~~~v~~~~~-------spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3          80 -KFEENLGNVFAMGV-------DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-----MITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             -ECCCCCCSEEEEEE-------CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-----CCCCEEECTTSCEEEEEE
T ss_pred             -EeeCCCceEEeeee-------cccccccceeccccccccccccccceeeeeecccc-----cccchhhccceeeeeeec
Confidence             22345577888877       88999999999999999999999988877776554     77899999999999832 


Q ss_pred             ----------cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEec
Q 022019          192 ----------YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (304)
Q Consensus       192 ----------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~  252 (304)
                                .++.+++||+.....     ...    ..+...+..++|+| ++..|++++.++.+.+||.
T Consensus       147 ~~~~~~~~~~~~~~~~v~d~~~~~~-----~~~----~~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         147 PLKHGETDGYVMQAIHVYDMEGRKI-----FAA----TTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             EECSSTTCSCCEEEEEEEETTTTEE-----EEC----SCSSSBEEEEEECT-TSCEEEEEESCCCCCEECS
T ss_pred             cccccceeeccccceeeeccccCce-----eee----cccccccccccccC-CCCEEEEEeCCCceEcccc
Confidence                      234689999976311     111    23445577888999 6778888888888877764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=4.3e-24  Score=167.40  Aligned_cols=177  Identities=14%  Similarity=0.215  Sum_probs=137.1

Q ss_pred             eEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE
Q 022019          112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG  191 (304)
Q Consensus       112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  191 (304)
                      ..+..+|...|++++|       +|++++|++|+.||+|++||+.+++....+..    .|...|.+++|+|++.+++++
T Consensus         5 ~~~~~GH~~~V~~l~~-------s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~----~h~~~v~~v~~~~~g~~~~~~   73 (299)
T d1nr0a2           5 DQVRYGHNKAITALSS-------SADGKTLFSADAEGHINSWDISTGISNRVFPD----VHATMITGIKTTSKGDLFTVS   73 (299)
T ss_dssp             EEEECCCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTCCEEECSSC----SCSSCEEEEEECTTSCEEEEE
T ss_pred             ceEcCCCCCCcEEEEE-------CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC----CCCCcEEEEEeeccceeeccc
Confidence            3466778899999988       77999999999999999999999887766542    233489999999999988888


Q ss_pred             cCCeEEEEEcCCCCccc-eeee--------eee-----------------------ccccccccceeEEEeecCCCcEEE
Q 022019          192 YNKSVRVFDVHRPGRDF-EKYS--------TLK-----------------------GNKEGQAGIMSAIAFSPTHTGMLA  239 (304)
Q Consensus       192 ~d~~i~v~d~~~~~~~~-~~~~--------~~~-----------------------~~~~~~~~~v~~~~~~p~~~~~l~  239 (304)
                      .|+.+++|+........ ....        .+.                       .........+.+++|+| ++.+++
T Consensus        74 ~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~  152 (299)
T d1nr0a2          74 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVA  152 (299)
T ss_dssp             TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEE
T ss_pred             ceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence            99999999976432100 0000        000                       00011223477899999 778999


Q ss_pred             EEecCCeEEEEecCCceEeE-EeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          240 IGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       240 ~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +|+.||.|++||+++++... ....|...|++++|+|++.+|++++ .|+.|++||+.++..+
T Consensus       153 ~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~  214 (299)
T d1nr0a2         153 VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD-QSRKVIPYSVANNFEL  214 (299)
T ss_dssp             EEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEEGGGTTEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            99999999999998876543 3446889999999999999999999 9999999999887554

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=7.2e-24  Score=166.56  Aligned_cols=166  Identities=16%  Similarity=0.266  Sum_probs=146.2

Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-c
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y  192 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~  192 (304)
                      .+.+|..+|++++|       +|++++|++|+.||+|++||+.+++....+..+..     .|.+++|+|++.+++.+ .
T Consensus        12 ~L~GH~~~I~~l~~-------sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~-----~V~~~~~~~~~~~~~~~~~   79 (317)
T d1vyhc1          12 ALSGHRSPVTRVIF-------HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-----SVQDISFDHSGKLLASCSA   79 (317)
T ss_dssp             EEECCSSCEEEEEE-------CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSS-----CEEEEEECTTSSEEEEEET
T ss_pred             EEcCCCCCeEEEEE-------cCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCC-----cEEEEeeeccccccccccc
Confidence            45678899999988       77899999999999999999999999888876654     89999999999999965 8


Q ss_pred             CCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEE
Q 022019          193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQ  272 (304)
Q Consensus       193 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~  272 (304)
                      ++.+.+|+....        .......++...+.++.|+| ++..+++++.|+.+++||+++++.+..+.+|...+.+++
T Consensus        80 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (317)
T d1vyhc1          80 DMTIKLWDFQGF--------ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR  150 (317)
T ss_dssp             TSCCCEEETTSS--------CEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             cccccccccccc--------ccccccccccccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeee
Confidence            999999998763        22222356778899999999 777899999999999999999999999999999999999


Q ss_pred             ECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          273 FSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       273 ~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      |+|++.+|++++ .|+.|++|++.+++.+
T Consensus       151 ~~~~~~~l~~~~-~d~~v~~~~~~~~~~~  178 (317)
T d1vyhc1         151 PNQDGTLIASCS-NDQTVRVWVVATKECK  178 (317)
T ss_dssp             ECTTSSEEEEEE-TTSCEEEEETTTCCEE
T ss_pred             cccCCCEEEEEe-CCCeEEEEeeccceee
Confidence            999999999999 9999999999887654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=7.4e-23  Score=168.35  Aligned_cols=240  Identities=11%  Similarity=0.058  Sum_probs=158.5

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..||....+...      .+..|. .+..++|||||++|++++.||+|++||+.+++....                .
T Consensus        43 ~v~vwD~~t~~~~~------~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~----------------~   99 (426)
T d1hzua2          43 QIALVDGDSKKIVK------VIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV----------------A   99 (426)
T ss_dssp             EEEEEETTTCSEEE------EEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE----------------E
T ss_pred             EEEEEECCCCcEEE------EEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEE----------------E
Confidence            45667766665554      566664 589999999999999999999999999987643211                1


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEEEE-eCCCCEEEEEcCCCeeeEEeecccc------------------------
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFAST-TRDHPIHLWDATTGLLRCTYRAYDA------------------------  169 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~------------------------  169 (304)
                      ..........+.+.   .+|+|||++++++ ..++.+.+||..++.....+..+..                        
T Consensus       100 ~i~~~~~~~~~~~s---~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~  176 (426)
T d1hzua2         100 EIKIGIEARSVESS---KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE  176 (426)
T ss_dssp             EEECCSEEEEEEEC---CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred             EEeCCCCCcceEEe---eeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCE
Confidence            12222222333332   2458899876544 5788999999887665443321110                        


Q ss_pred             --------------------------cccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCcccee-----------
Q 022019          170 --------------------------VDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEK-----------  210 (304)
Q Consensus       170 --------------------------~~~~~~v~~i~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~-----------  210 (304)
                                                ......+..+.|+|++++++++  .+..+.+++..........           
T Consensus       177 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (426)
T d1hzua2         177 FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRG  256 (426)
T ss_dssp             EEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCC
T ss_pred             EEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccce
Confidence                                      0112245689999999988844  6777888887643210000           


Q ss_pred             ----------e-------------------------eeeeccccccccceeEEEeecCCCcEEEE-------EecCCeEE
Q 022019          211 ----------Y-------------------------STLKGNKEGQAGIMSAIAFSPTHTGMLAI-------GSYSQTSA  248 (304)
Q Consensus       211 ----------~-------------------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-------~~~dg~i~  248 (304)
                                .                         ........+|...+..++|+| ++.+|++       ++.+++|+
T Consensus       257 ~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~  335 (426)
T d1hzua2         257 ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVA  335 (426)
T ss_dssp             EEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEE
T ss_pred             eeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEE
Confidence                      0                         001112345677789999999 6667774       55688999


Q ss_pred             EEecCCceEeEEec---------cccCCeEEEEECCCCcEEEEe----eccCCeEEEEecccceee
Q 022019          249 IYREDNMELLYVLH---------GQEGGVTHVQFSRDGNYLYTG----GRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       249 i~d~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~----~~~d~~i~vwd~~~~~~~  301 (304)
                      |||++++++..++.         .|...|.+++|||||++|+.+    ...+|.|+|||.++++.+
T Consensus       336 vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         336 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             EEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             EEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence            99999887665542         345579999999999987543    126889999999998754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=1.6e-23  Score=168.05  Aligned_cols=191  Identities=14%  Similarity=0.099  Sum_probs=146.9

Q ss_pred             eEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEE
Q 022019           64 KGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (304)
Q Consensus        64 ~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (304)
                      ..-.||| ||+++|+++ +|.|.+||+.++..                   ....|...|.+++|       +|||+.|+
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~-------------------~~~~~~~~v~~~~~-------spDg~~l~   58 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-------------------LKVPEPLRIRYVRR-------GGDTKVAF   58 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-------------------EECSCCSCEEEEEE-------CSSSEEEE
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcE-------------------EEccCCCCEEEEEE-------CCCCCEEE
Confidence            3467999 999999887 57999999875432                   23456788999988       88999988


Q ss_pred             EEeCCC--CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeecccc
Q 022019          143 STTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE  219 (304)
Q Consensus       143 ~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~  219 (304)
                      +++.+.  .|++||+.+++... +..+.     ..+.+++|+|++++|+++ .++.+++|++.....        .....
T Consensus        59 ~~~~~~g~~v~v~d~~~~~~~~-~~~~~-----~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~--------~~~~~  124 (360)
T d1k32a3          59 IHGTREGDFLGIYDYRTGKAEK-FEENL-----GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP--------TVIER  124 (360)
T ss_dssp             EEEETTEEEEEEEETTTCCEEE-CCCCC-----CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------EEEEE
T ss_pred             EEEcCCCCEEEEEECCCCcEEE-eeCCC-----ceEEeeeecccccccceeccccccccccccccce--------eeeee
Confidence            776553  79999999887654 33333     389999999999999955 999999999976321        11124


Q ss_pred             ccccceeEEEeecCCCcEEEEEe----------cCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCe
Q 022019          220 GQAGIMSAIAFSPTHTGMLAIGS----------YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY  289 (304)
Q Consensus       220 ~~~~~v~~~~~~p~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~  289 (304)
                      .+...+.+++|+| ++.+|+.+.          .++.+++||+.+++..... .+...+..+.|+|+|++|++++ .++.
T Consensus       125 ~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s-~~~~  201 (360)
T d1k32a3         125 SREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLS-YRSL  201 (360)
T ss_dssp             CSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEE-SCCC
T ss_pred             cccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccccccCCCCEEEEEe-CCCc
Confidence            4566788999999 666776543          2346999999888765444 4677889999999999999999 9999


Q ss_pred             EEEEecccc
Q 022019          290 ILCWDLRKA  298 (304)
Q Consensus       290 i~vwd~~~~  298 (304)
                      +.+|+....
T Consensus       202 ~~~~d~~~~  210 (360)
T d1k32a3         202 DPSPDRVVL  210 (360)
T ss_dssp             CCEECSSSS
T ss_pred             eEccccccc
Confidence            999997654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.1e-22  Score=161.42  Aligned_cols=234  Identities=10%  Similarity=-0.011  Sum_probs=149.3

Q ss_pred             eecCCCCceeEEEEcCC-CCeEEEecCCCeEEEeeCCCCCCcccccccccccc-----CCccceEEEeecCCeEEEEeec
Q 022019           55 TSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKD-----QDSYEASLVVTEGESVYDFCWF  128 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~  128 (304)
                      ...+|.++|++++|+|+ +.+|++|+.||.|++|++.................     .......+.......+.  .|.
T Consensus        51 ~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~wd  128 (342)
T d1yfqa_          51 QSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE--VID  128 (342)
T ss_dssp             EEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEE--EEC
T ss_pred             EecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccc--eee
Confidence            34479999999999986 45899999999999999986654322211110000     00000000001111110  110


Q ss_pred             ----------------------CccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECC-CC
Q 022019          129 ----------------------PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TG  185 (304)
Q Consensus       129 ----------------------~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~  185 (304)
                                            .....+.+.+..+++++.|+.|++||+..............  ....+.+..+.+ ++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  206 (342)
T d1yfqa_         129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG--LKYQIRDVALLPKEQ  206 (342)
T ss_dssp             HHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECS--CSSCEEEEEECSGGG
T ss_pred             ccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecc--cccceeeeEeecCCC
Confidence                                  01122355777899999999999999987654433322221  112455666655 45


Q ss_pred             cEEEEE-cCCeEEEEEcCCCCccceee-------eeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE
Q 022019          186 TKIFAG-YNKSVRVFDVHRPGRDFEKY-------STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL  257 (304)
Q Consensus       186 ~~l~~~-~d~~i~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~  257 (304)
                      ..++++ .||.+.+|++..........       .........|...+.+++|+| ++.+|++|+.||.|++||+++++.
T Consensus       207 ~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~  285 (342)
T d1yfqa_         207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKK  285 (342)
T ss_dssp             CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEE
T ss_pred             CEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecC-CccEEEEECCCCEEEEEECCCCcE
Confidence            666654 99999999987543221110       011122345667799999999 677999999999999999999999


Q ss_pred             eEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          258 LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       258 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      +..+..+ ..+..++|+|+|++|++++ .|+.+++|..
T Consensus       286 l~~~~~~-~~~~~~~~s~~~~~l~~a~-sdd~~~~~~~  321 (342)
T d1yfqa_         286 IKNFAKF-NEDSVVKIACSDNILCLAT-SDDTFKTNAA  321 (342)
T ss_dssp             EEECCCC-SSSEEEEEEECSSEEEEEE-ECTHHHHCSS
T ss_pred             EEEecCC-CCCEEEEEEeCCCEEEEEE-cCCcEEEeee
Confidence            9888643 3456678888999999998 7877777755

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=2.7e-20  Score=145.35  Aligned_cols=224  Identities=16%  Similarity=0.184  Sum_probs=153.4

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeE-EEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      +..||..+.+...      .+.. ...+..++|+|||++| ++++.++.|++||+.+++....                 
T Consensus        14 v~v~D~~t~~~~~------~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-----------------   69 (301)
T d1l0qa2          14 ISVIDVTSNKVTA------TIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-----------------   69 (301)
T ss_dssp             EEEEETTTTEEEE------EEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-----------------
T ss_pred             EEEEECCCCeEEE------EEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-----------------
Confidence            5667777665443      3332 2457899999999987 5667899999999986543211                 


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEEE-EEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVFA-STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-  191 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-  191 (304)
                       .........+.|       ++++..++ ++..++.+.+|+..+++....+....      .+.++.|+|++..++ ++ 
T Consensus        70 -~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~dg~~~~~~~~  135 (301)
T d1l0qa2          70 -VPAGSSPQGVAV-------SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK------SPLGLALSPDGKKLYVTNN  135 (301)
T ss_dssp             -EECSSSEEEEEE-------CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEET
T ss_pred             -eecccccccccc-------ccccccccccccccceeeecccccceeeeeccccc------cceEEEeecCCCeeeeeec
Confidence             122233444544       77777554 45567789999999998887776554      667899999999887 45 


Q ss_pred             cCCeEEEEEcCCCCccceeeee------ee----------------------------ccccccccceeEEEeecCCCcE
Q 022019          192 YNKSVRVFDVHRPGRDFEKYST------LK----------------------------GNKEGQAGIMSAIAFSPTHTGM  237 (304)
Q Consensus       192 ~d~~i~v~d~~~~~~~~~~~~~------~~----------------------------~~~~~~~~~v~~~~~~p~~~~~  237 (304)
                      .++.+.+|+........ ....      +.                            .........+..++|++++. .
T Consensus       136 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~  213 (301)
T d1l0qa2         136 GDKTVSVINTVTKAVIN-TVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGT-K  213 (301)
T ss_dssp             TTTEEEEEETTTTEEEE-EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSS-E
T ss_pred             cccceeeeeccccceee-ecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeecccccc-c
Confidence            78889999987632110 0000      00                            00001122356788999444 4


Q ss_pred             EEEEec---CCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEE-EeeccCCeEEEEecccceee
Q 022019          238 LAIGSY---SQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLY-TGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       238 l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +++++.   ++.|++||+.+++.+..+.. ...+.+++|+|||++|+ +++ .|+.|++||+++++.+
T Consensus       214 ~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~-~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         214 AYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALS-FCNTVSVIDTATNTIT  279 (301)
T ss_dssp             EEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEET-TTTEEEEEETTTTEEE
T ss_pred             cccccccceeeeeeeeecCCCeEEEEEcC-CCCEEEEEEeCCCCEEEEEEC-CCCeEEEEECCCCeEE
Confidence            444433   46899999999999888874 45679999999999885 555 8999999999998765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.7e-20  Score=148.79  Aligned_cols=232  Identities=14%  Similarity=0.052  Sum_probs=157.0

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeE-EEecCCCeEEEeeCCCCCCccccccccccccCCccceE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS  113 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  113 (304)
                      .+..||.........   + ....+...+.+++|+|||+++ ++++.++.|.+||+.+++.........           
T Consensus        12 ~v~v~D~~s~~~~~~---i-~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~-----------   76 (337)
T d1pbyb_          12 KLVVIDTEKMAVDKV---I-TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST-----------   76 (337)
T ss_dssp             EEEEEETTTTEEEEE---E-ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB-----------
T ss_pred             EEEEEECCCCeEEEE---E-ECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC-----------
Confidence            456677776654431   0 223345668899999999987 566789999999998775533222111           


Q ss_pred             EEeecCCeEEEEeecCccceeCCCccEEEEEeC------------CCCEEEEEcCCCeeeEEeecccccccccceEEEEE
Q 022019          114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTR------------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF  181 (304)
Q Consensus       114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~  181 (304)
                            ...  ..-.+..++++|+++.++++..            +..+.+||..+++....+....      .+.+++|
T Consensus        77 ------~~~--~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~  142 (337)
T d1pbyb_          77 ------PEE--RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR------QITMLAW  142 (337)
T ss_dssp             ------TTE--EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS------SCCCEEE
T ss_pred             ------Ccc--cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC------CceEEEE
Confidence                  000  0112334566899998887763            5678999999998887776544      6678999


Q ss_pred             CCCCcEEEEEcCCeEEEEEcCCCCcccee-----------------e-------------ee------------------
Q 022019          182 NPTGTKIFAGYNKSVRVFDVHRPGRDFEK-----------------Y-------------ST------------------  213 (304)
Q Consensus       182 ~~~~~~l~~~~d~~i~v~d~~~~~~~~~~-----------------~-------------~~------------------  213 (304)
                      +|+|++++++. +.+.+||..........                 .             ..                  
T Consensus       143 s~dg~~l~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (337)
T d1pbyb_         143 ARDGSKLYGLG-RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL  221 (337)
T ss_dssp             CTTSSCEEEES-SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred             cCCCCEEEEEc-CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccE
Confidence            99999998762 44677887653100000                 0             00                  


Q ss_pred             ----------eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEe
Q 022019          214 ----------LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG  283 (304)
Q Consensus       214 ----------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  283 (304)
                                .......+...+..+.++| ++.+++++  ++.|++||+.+++.+..+. +...+.+++|+|||++|+++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~  297 (337)
T d1pbyb_         222 LTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLG  297 (337)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEE
T ss_pred             EEEEcCCCcEEEEEecCCCcceEEEEecc-cceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEE
Confidence                      0000011223345566777 45555544  5899999999999998886 56778999999999999999


Q ss_pred             eccCCeEEEEecccceee
Q 022019          284 GRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       284 ~~~d~~i~vwd~~~~~~~  301 (304)
                      + .|+.|++||+++++.+
T Consensus       298 ~-~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         298 G-ALGDLAAYDAETLEKK  314 (337)
T ss_dssp             S-BSSEEEEEETTTCCEE
T ss_pred             e-CCCcEEEEECCCCcEE
Confidence            9 9999999999998765

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.7e-20  Score=154.15  Aligned_cols=205  Identities=10%  Similarity=-0.018  Sum_probs=144.5

Q ss_pred             CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCE
Q 022019           71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI  150 (304)
Q Consensus        71 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i  150 (304)
                      +.-++++.+.||+|.|||..+++....                  +..+..+..++|       ||||+++++++.|+.|
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~------------------~~~g~~~~~v~f-------SpDG~~l~~~s~dg~v   85 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTV------------------LDTGYAVHISRL-------SASGRYLFVIGRDGKV   85 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEE------------------EECSSCEEEEEE-------CTTSCEEEEEETTSEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEE------------------EeCCCCeeEEEE-------CCCCCEEEEEcCCCCE
Confidence            333468899999999999987755322                  222345666655       9999999999999999


Q ss_pred             EEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeeee----eccccccccc
Q 022019          151 HLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTL----KGNKEGQAGI  224 (304)
Q Consensus       151 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~----~~~~~~~~~~  224 (304)
                      ++||+.+++.....+......+...+.+..|+|||++|+ ++ .++.|++||..+... .......    ......+...
T Consensus        86 ~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~-~~~~~~~~~~~~~~~~~~~~~  164 (432)
T d1qksa2          86 NMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPR  164 (432)
T ss_dssp             EEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCC
T ss_pred             EEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc-eeeeccCCccccceeccCCCc
Confidence            999998876543333222223333566777889999876 45 899999999987432 1111100    0011223445


Q ss_pred             eeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-cccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       225 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      ...+.++|++..++++...++.|.+||..+.+...... .+...+..+.|+|+|+++++++..++.+.++|..+++.+
T Consensus       165 ~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~  242 (432)
T d1qksa2         165 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  242 (432)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             eeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEE
Confidence            67889999666677778889999999998766443332 245678999999999998888867889999999887654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=5.5e-20  Score=146.29  Aligned_cols=209  Identities=14%  Similarity=0.126  Sum_probs=140.4

Q ss_pred             EEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE-EEE
Q 022019           66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-AST  144 (304)
Q Consensus        66 i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~  144 (304)
                      ++|++++++|++++.|++|.+||+.+++....                +...+...       |..++++|||+++ +++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t----------------~~~~~~~~-------p~~l~~spDG~~l~v~~   58 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKS----------------CVMPDKFG-------PGTAMMAPDNRTAYVLN   58 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEE----------------EECSSCCS-------SCEEEECTTSSEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEE----------------EEcCCCCC-------cceEEECCCCCEEEEEE
Confidence            57899999999999999999999987644322                11222222       3344558999886 555


Q ss_pred             eCCCCEEEEEcCCCeeeEEeeccccc-ccccceEEEEECCCCcEEEEE-------------cCCeEEEEEcCCCCccc--
Q 022019          145 TRDHPIHLWDATTGLLRCTYRAYDAV-DEITAAFSVAFNPTGTKIFAG-------------YNKSVRVFDVHRPGRDF--  208 (304)
Q Consensus       145 ~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~-------------~d~~i~v~d~~~~~~~~--  208 (304)
                      +.++.|++||+.+++....+...... .....+..++|+|||++++++             .+..+.+||........  
T Consensus        59 ~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  138 (346)
T d1jmxb_          59 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV  138 (346)
T ss_dssp             TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred             CCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEE
Confidence            67899999999999888766543321 112245689999999888743             25667777664321000  


Q ss_pred             -----------------------------------eeeeeee--------------------------------------
Q 022019          209 -----------------------------------EKYSTLK--------------------------------------  215 (304)
Q Consensus       209 -----------------------------------~~~~~~~--------------------------------------  215 (304)
                                                         .....+.                                      
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (346)
T d1jmxb_         139 RTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD  218 (346)
T ss_dssp             EEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred             EeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeecc
Confidence                                               0000000                                      


Q ss_pred             --------------------------ccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeE
Q 022019          216 --------------------------GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT  269 (304)
Q Consensus       216 --------------------------~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~  269 (304)
                                                .....+...+..+.++|++.. ++.+. ++.|.+||..+++.+..+. +...+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~  295 (346)
T d1jmxb_         219 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYY  295 (346)
T ss_dssp             -----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE-ESEEEEEETTTTEEEEEEE-CSSCCC
T ss_pred             CceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCE-EEEec-CCeEEEEECCCCcEEEEEc-CCCCEE
Confidence                                      000011222445566664443 34333 3679999999999888886 456789


Q ss_pred             EEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       270 ~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +++|+|||++|++++ .|+.|++||+++++.+
T Consensus       296 ~va~s~DG~~l~v~~-~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         296 CVAFDKKGDKLYLGG-TFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             EEEECSSSSCEEEES-BSSEEEEEETTTTEEE
T ss_pred             EEEEcCCCCEEEEEe-CCCcEEEEECccCCEE
Confidence            999999999999999 9999999999998876

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=1.8e-18  Score=141.88  Aligned_cols=228  Identities=7%  Similarity=-0.030  Sum_probs=145.6

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEE
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL  114 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (304)
                      .+..||....+...      .+..|. .+..++|||||++|++++.||+|++||+.+++...                ..
T Consensus        43 ~v~v~D~~t~~v~~------~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~----------------~~   99 (432)
T d1qksa2          43 QIALIDGSTYEIKT------VLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT----------------VA   99 (432)
T ss_dssp             EEEEEETTTCCEEE------EEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE----------------EE
T ss_pred             EEEEEECCCCcEEE------EEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE----------------EE
Confidence            35567766665554      555553 59999999999999999999999999998654211                11


Q ss_pred             EeecCCeEEEEeecCccceeCCCccEE-EEEeCCCCEEEEEcCCCeeeEEeecccc------cccccceEEEEECCCCcE
Q 022019          115 VVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIHLWDATTGLLRCTYRAYDA------VDEITAAFSVAFNPTGTK  187 (304)
Q Consensus       115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~~v~~i~~~~~~~~  187 (304)
                      ..........+.+.|   +|+|||++| ++++.++.|++||..+++....+..+..      .........+.++|++..
T Consensus       100 ~i~~~~~~~~~~~s~---~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~  176 (432)
T d1qksa2         100 EIKIGSEARSIETSK---MEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE  176 (432)
T ss_dssp             EEECCSEEEEEEECC---STTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred             EEecCCCCCCeEEec---ccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCE
Confidence            222223334444443   468999975 6778899999999999998877765432      123335678999999988


Q ss_pred             EEE-E-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEecc--
Q 022019          188 IFA-G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--  263 (304)
Q Consensus       188 l~~-~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--  263 (304)
                      +++ . .++.|.+||...... . ....     ..+...+..++|+|++..+++++..++.+.++|..+++.+..+..  
T Consensus       177 ~~vs~~~~~~i~~~d~~~~~~-~-~~~~-----i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~  249 (432)
T d1qksa2         177 FIVNVKETGKILLVDYTDLNN-L-KTTE-----ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG  249 (432)
T ss_dssp             EEEEETTTTEEEEEETTCSSE-E-EEEE-----EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEEccCCeEEEEEccCCCc-c-eEEE-----EcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCc
Confidence            874 4 789999999875321 1 1111     123345789999995444444455567899999988776655431  


Q ss_pred             ---ccCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          264 ---QEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       264 ---~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                         |........+...+....+....++.|.+|+.
T Consensus       250 ~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~  284 (432)
T d1qksa2         250 QTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGT  284 (432)
T ss_dssp             SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             cccccCcccceecCCCCceecccccCCceEEeccc
Confidence               22223333443333333333223455555544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.8e-19  Score=142.73  Aligned_cols=165  Identities=18%  Similarity=0.242  Sum_probs=122.2

Q ss_pred             eeeecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        53 ~~~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ...+.+|...+..+.+  ++.+|++|+.||.|++||+.......                 ....|...+.++.+     
T Consensus       170 ~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~-----------------~~~~~~~~v~~~~~-----  225 (342)
T d2ovrb2         170 LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH-----------------TLTGHQSLTSGMEL-----  225 (342)
T ss_dssp             EEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE-----------------EECCCCSCEEEEEE-----
T ss_pred             eEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeee-----------------EecccccceeEEec-----
Confidence            3467788777766555  68899999999999999998654321                 23344566776665     


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcCCeEEEEEcCCCCccceee
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d~~i~v~d~~~~~~~~~~~  211 (304)
                          ++++|++++.||.|++||+...+....+..+.  .+...+.++.+++  +++++ +.||.|++||++++. .   +
T Consensus       226 ----~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~s~s~Dg~i~iwd~~tg~-~---i  293 (342)
T d2ovrb2         226 ----KDNILVSGNADSTVKIWDIKTGQCLQTLQGPN--KHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGE-F---I  293 (342)
T ss_dssp             ----ETTEEEEEETTSCEEEEETTTCCEEEEECSTT--SCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCC-E---E
T ss_pred             ----CCCEEEEEcCCCEEEEEecccccccccccccc--eeeeceeecccCC--CeeEEEcCCCEEEEEECCCCC-E---E
Confidence                45699999999999999999888777666543  3444677777764  57775 599999999998742 2   2


Q ss_pred             eeee-ccccccccceeEEEeecCCCcEEEEEecCCe----EEEEecCC
Q 022019          212 STLK-GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT----SAIYREDN  254 (304)
Q Consensus       212 ~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~----i~i~d~~~  254 (304)
                      ..+. ....+|...|.+++|+| ++.++++|+.||+    |++||+..
T Consensus       294 ~~~~~~~~~~~~~~v~~v~~s~-~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         294 RNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEecccCCCCCCCEEEEEECC-CCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            2222 22356778899999999 7889999999985    99999853

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.2e-19  Score=140.91  Aligned_cols=113  Identities=10%  Similarity=0.173  Sum_probs=88.4

Q ss_pred             CCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEE-eecccccccccceEEEEECCCC----------cE
Q 022019          119 GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFNPTG----------TK  187 (304)
Q Consensus       119 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~v~~i~~~~~~----------~~  187 (304)
                      ...+.+++|       +|++.+|++|+.||.|++||+.+++.... +..|.     ..|.+++|+|.+          .+
T Consensus       162 ~~~v~~~~~-------s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~-----~~v~~~~~~p~~~~~~~~~~~~~~  229 (287)
T d1pgua2         162 RAKPSYISI-------SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRT-----SKINAISWKPAEKGANEEEIEEDL  229 (287)
T ss_dssp             SSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCS-----SCEEEEEECCCC------CCSCCE
T ss_pred             CCceeEEEe-------ccCccccccccccccccceeecccccccccccccc-----cccceeeecccccccccccCCCCe
Confidence            355667766       88999999999999999999998876543 33333     389999998754          57


Q ss_pred             EEEE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEec
Q 022019          188 IFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE  252 (304)
Q Consensus       188 l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~  252 (304)
                      +++| .|+.|++||++.+....       ....+|...|++++|+| ++ .|++++.||.|++||+
T Consensus       230 l~sgs~D~~i~iw~~~~~~~~~-------~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         230 VATGSLDTNIFIYSVKRPMKII-------KALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEETTSCEEEEESSCTTCCE-------EETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred             eEeecCCCeEEEEECCCCCeEE-------EEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence            7755 99999999997643222       22367889999999999 55 5889999999999986

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.9e-18  Score=134.92  Aligned_cols=218  Identities=10%  Similarity=0.124  Sum_probs=139.6

Q ss_pred             CCCCceeEEEEcCCCCeEEE-ecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC
Q 022019           58 IPNNFLKGIKWSPDGSSFLT-SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (304)
                      .|.+.|.+|+|+|||++|++ +..|+.|++|++.........              ...       ......|..++++|
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~--------------~~~-------~~~~~~p~~l~~sp   92 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF--------------AAE-------SALPGSLTHISTDH   92 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--------------EEE-------EECSSCCSEEEECT
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE--------------eee-------cccCCCceEEEEcC
Confidence            57788999999999998855 456899999998754321110              011       11223344556699


Q ss_pred             CccEEEEEeC-CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCccceeeee
Q 022019          137 TSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       137 ~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      +|++|++++. ++.|.+|+..............   +...+.++.++|+++++++ + .+..|.+|+.............
T Consensus        93 Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (333)
T d1ri6a_          93 QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE---GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA  169 (333)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC---CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred             CCCEEeecccCCCceeeeccccccceecccccC---CCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeece
Confidence            9999988875 6789999987766544433222   1225678889999988884 4 6677888887553211100000


Q ss_pred             -------------------------------------------------eec--cccccccceeEEEeecCCCcEEEEEe
Q 022019          214 -------------------------------------------------LKG--NKEGQAGIMSAIAFSPTHTGMLAIGS  242 (304)
Q Consensus       214 -------------------------------------------------~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~  242 (304)
                                                                       ...  ...........++++|++..+++++.
T Consensus       170 ~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~  249 (333)
T d1ri6a_         170 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR  249 (333)
T ss_dssp             EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred             eeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecc
Confidence                                                             000  00011223456778886665666677


Q ss_pred             cCCeEEEEecCCceEeEEe---ccccCCeEEEEECCCCcEEEEeeccCCeEEEEec--ccce
Q 022019          243 YSQTSAIYREDNMELLYVL---HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL--RKAV  299 (304)
Q Consensus       243 ~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~--~~~~  299 (304)
                      .++.+.+|++........+   ......+.+++|+|||++|++++..++.|++|++  ++|+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         250 TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL  311 (333)
T ss_dssp             TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             cCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCc
Confidence            7889999988755433222   2334567889999999998888746789999955  4554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=6.3e-19  Score=144.66  Aligned_cols=202  Identities=10%  Similarity=-0.008  Sum_probs=135.6

Q ss_pred             eEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEE
Q 022019           74 SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLW  153 (304)
Q Consensus        74 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  153 (304)
                      ++++.+.||+|+|||+.+++....                  +..+..+..++|       +|||+++++++.|++|++|
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~------------------l~~g~~~~~vaf-------SPDGk~l~~~~~d~~v~vw   88 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKV------------------IDTGYAVHISRM-------SASGRYLLVIGRDARIDMI   88 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEE------------------EECCSSEEEEEE-------CTTSCEEEEEETTSEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEE------------------EeCCCCeeEEEE-------CCCCCEEEEEeCCCCEEEE
Confidence            567888999999999987654322                  222344566655       9999999999999999999


Q ss_pred             EcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeeeee----ccccccccceeE
Q 022019          154 DATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLK----GNKEGQAGIMSA  227 (304)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~----~~~~~~~~~v~~  227 (304)
                      |+.+++............+...+.+++|+|||++++ ++ .++.+.+||...... ........    .....+......
T Consensus        89 d~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  167 (426)
T d1hzua2          89 DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAA  167 (426)
T ss_dssp             ETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEE
T ss_pred             EccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce-eEEeeccCCCccceeecCCCceeE
Confidence            999887655544333333444667888899999887 44 899999999987421 11111000    001112233455


Q ss_pred             EEeecCCCcEEEEEecCCeEEEEecCCceE-eEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          228 IAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       228 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      +.+++++..++.+....+.+.+++...... ......+...+..+.|+|++++++++...+..+.+++..+++.+
T Consensus       168 i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~  242 (426)
T d1hzua2         168 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS  242 (426)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEE
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEE
Confidence            666664444444444456666666655432 22233567789999999999999888867888999999988764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.79  E-value=3.4e-16  Score=125.71  Aligned_cols=254  Identities=11%  Similarity=0.032  Sum_probs=153.8

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEec----------CCCeEEEeeCCCCCCccccccccc--
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSL--  103 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~~--  103 (304)
                      +..||....+...      .+..+..+  .++|+|||++|++++          .++.|.+||..+++..........  
T Consensus        49 v~v~D~~tg~~~~------~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~  120 (373)
T d2madh_          49 QWVLDAGSGSILG------HVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR  120 (373)
T ss_pred             EEEEECCCCCEEE------EEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcce
Confidence            4556655554443      44444433  799999999998874          467899999998876433221110  


Q ss_pred             ------------cccCCccc---------eEEEeecCCeEEEEeecCccceeCCCccE-EEEEeCCCCEEEEEcCCCeee
Q 022019          104 ------------AKDQDSYE---------ASLVVTEGESVYDFCWFPHMSASDPTSCV-FASTTRDHPIHLWDATTGLLR  161 (304)
Q Consensus       104 ------------~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~  161 (304)
                                  ..+.....         ..+.......+....-.|....++|+++. +++.+.|+.+.+|+...+...
T Consensus       121 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~  200 (373)
T d2madh_         121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG  200 (373)
T ss_pred             eEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence                        00000000         00000111111222223445567888765 467889999999999888776


Q ss_pred             EEeeccccc-ccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccc------cccccceeEEEeecCC
Q 022019          162 CTYRAYDAV-DEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK------EGQAGIMSAIAFSPTH  234 (304)
Q Consensus       162 ~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~p~~  234 (304)
                      ......... ........+.+++++.+++.+.++.+.+|+.........  .......      .........++++|++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  278 (373)
T d2madh_         201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNK--APIDALSGGRKADTWRPGGWQQVAYLKSS  278 (373)
T ss_pred             EEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEE--EeeccccCcEEeeeeccCcceeeEEecCC
Confidence            655432211 111234566777888777788899999999876421111  1110000      0011123345555532


Q ss_pred             ---------CcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcE--EEEeeccCCeEEEEecccceee
Q 022019          235 ---------TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY--LYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       235 ---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                               +..+++...++.+.+||..+++.+..+. +...+..++|+|||+.  +++++ .|+.|++||+.+++.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~-~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSA-GTEVLHIYDAGAGDQD  354 (373)
T ss_pred             CeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeC-CCCeEEEEECCCCCEE
Confidence                     2234455667889999999999988886 5677899999999985  35666 8999999999999765

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=1.5e-17  Score=132.80  Aligned_cols=238  Identities=11%  Similarity=0.065  Sum_probs=143.8

Q ss_pred             eeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEe----------cCCCeEEEeeCCCCCCccccccccccc
Q 022019           36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTS----------SEDKTLRIFSLPENGISYDVNACSLAK  105 (304)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~----------~~dg~v~vwd~~~~~~~~~~~~~~~~~  105 (304)
                      +..||....+...      .+..+.  +..++|||||++|+++          +.|+.|++||+.+++.......     
T Consensus        30 v~v~D~~tg~~~~------~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~-----   96 (355)
T d2bbkh_          30 QFVIDGEAGRVIG------MIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL-----   96 (355)
T ss_dssp             EEEEETTTTEEEE------EEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE-----
T ss_pred             EEEEECCCCcEEE------EEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEec-----
Confidence            5567776665443      333333  4479999999988764          3478999999987654322211     


Q ss_pred             cCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEe--CCCCEEEEEcCCCeeeEEeeccccc-------------
Q 022019          106 DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT--RDHPIHLWDATTGLLRCTYRAYDAV-------------  170 (304)
Q Consensus       106 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~-------------  170 (304)
                                  +......+...|..++|+++++.+++++  .+..+.+|+..+++....+......             
T Consensus        97 ------------~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
T d2bbkh_          97 ------------PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH  164 (355)
T ss_dssp             ------------TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred             ------------CCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEE
Confidence                        1122222233455566788888877664  3557888888887766554432110             


Q ss_pred             ---------------------------ccccceEEEEECCCCcEEE-EEcCCeEEEEEcCCCCccceeeeeeec----cc
Q 022019          171 ---------------------------DEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKG----NK  218 (304)
Q Consensus       171 ---------------------------~~~~~v~~i~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~----~~  218 (304)
                                                 .+...+....+.+++..++ ++.++.+++|++...............    ..
T Consensus       165 ~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  244 (355)
T d2bbkh_         165 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD  244 (355)
T ss_dssp             ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHT
T ss_pred             cCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEee
Confidence                                       0001122334455555555 447888888888764221111000000    00


Q ss_pred             cccccceeEEEeecCCCcEEEEEecC----------CeEEEEecCCceEeEEeccccCCeEEEEECCCCcE--EEEeecc
Q 022019          219 EGQAGIMSAIAFSPTHTGMLAIGSYS----------QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY--LYTGGRK  286 (304)
Q Consensus       219 ~~~~~~v~~~~~~p~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~~  286 (304)
                      .........++++| ++..++....+          ..|.+||..+++.+..+.. ...+.+++|+|||+.  +++++ .
T Consensus       245 ~~~p~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~-~  321 (355)
T d2bbkh_         245 GWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALST-G  321 (355)
T ss_dssp             TEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEET-T
T ss_pred             eeeccceEEEEEeC-CCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEEC-C
Confidence            00112234688999 44455544433          3699999999998888873 456889999999973  34555 8


Q ss_pred             CCeEEEEecccceee
Q 022019          287 DPYILCWDLRKAVQV  301 (304)
Q Consensus       287 d~~i~vwd~~~~~~~  301 (304)
                      |+.|++||+++++.+
T Consensus       322 d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         322 DKTLYIHDAESGEEL  336 (355)
T ss_dssp             TTEEEEEETTTCCEE
T ss_pred             CCEEEEEECCCCCEE
Confidence            999999999999765

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.78  E-value=2.3e-16  Score=122.65  Aligned_cols=185  Identities=14%  Similarity=0.212  Sum_probs=137.5

Q ss_pred             EEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE-EEEeCCCCEEEE
Q 022019           75 FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIHLW  153 (304)
Q Consensus        75 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~  153 (304)
                      +++++.|++|.+||+.+++....                  +..+.....+       +++|+|++| ++++.++.|++|
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~------------------i~~g~~p~~v-------a~spdG~~l~v~~~~~~~i~v~   59 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTAT------------------IPVGSNPMGA-------VISPDGTKVYVANAHSNDVSII   59 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEE------------------EECSSSEEEE-------EECTTSSEEEEEEGGGTEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEE------------------EECCCCceEE-------EEeCCCCEEEEEECCCCEEEEE
Confidence            34677899999999987654322                  1222333444       458999877 566788999999


Q ss_pred             EcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEee
Q 022019          154 DATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS  231 (304)
Q Consensus       154 d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  231 (304)
                      |+.+++.+..+..+.      .+..+.|++++..++ ++ .++.+.+|+.....    ....+     .+......+.|+
T Consensus        60 d~~t~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~  124 (301)
T d1l0qa2          60 DTATNNVIATVPAGS------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT----VAGTV-----KTGKSPLGLALS  124 (301)
T ss_dssp             ETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----EEEEE-----ECSSSEEEEEEC
T ss_pred             ECCCCceeeeeeccc------cccccccccccccccccccccceeeecccccce----eeeec-----cccccceEEEee
Confidence            999999888877654      567899999998877 45 78899999997631    11211     123346789999


Q ss_pred             cCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          232 PTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       232 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      |++..+++++..++.+.+|+..+...+..+..+ ..+..+.++|++..+++++..++.+.+|+....+.
T Consensus       125 ~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (301)
T d1l0qa2         125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV  192 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             cCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceee
Confidence            966666677778899999999999988888744 55789999999999988884567788888776543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=6.5e-16  Score=121.90  Aligned_cols=192  Identities=11%  Similarity=0.130  Sum_probs=129.0

Q ss_pred             CeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE-EEEeCCCCEE
Q 022019           73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIH  151 (304)
Q Consensus        73 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~  151 (304)
                      +||++++.|++|.|||+.+.+....+....               ++..       |..++++|||+++ ++++.++.|.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~---------------~~~~-------~~~i~~spDg~~l~v~~~~~~~v~   59 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIAD---------------AGPT-------PMVPMVAPGGRIAYATVNKSESLV   59 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTT---------------CTTC-------CCCEEECTTSSEEEEEETTTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCC---------------CCCC-------ccEEEECCCCCEEEEEECCCCeEE
Confidence            489999999999999998764432211100               1122       3344559999987 5667899999


Q ss_pred             EEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-c------------CCeEEEEEcCCCCccceeeeeeeccc
Q 022019          152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y------------NKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       152 i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~------------d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                      +||+.+++....+..+........+..++|+|++++++++ .            +..+.+||.....    ....+    
T Consensus        60 v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~----  131 (337)
T d1pbyb_          60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS----RRKAF----  131 (337)
T ss_dssp             EEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE----EEEEE----
T ss_pred             EEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe----EEEec----
Confidence            9999999998887766543444456789999999998844 2            4678889987631    11111    


Q ss_pred             cccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEe-------------------------------------
Q 022019          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-------------------------------------  261 (304)
Q Consensus       219 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------------  261 (304)
                       .....+..++|+| ++.++++++.  .+.+||..+++....+                                     
T Consensus       132 -~~~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (337)
T d1pbyb_         132 -EAPRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK  207 (337)
T ss_dssp             -ECCSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred             -cccCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeee
Confidence             1223477899999 6667776654  4667776655433221                                     


Q ss_pred             -----------------------------ccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          262 -----------------------------HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       262 -----------------------------~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                                                   ..+...+..+.++|++.+++.+   ++.|++||+.+++.+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~  273 (337)
T d1pbyb_         208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASI  273 (337)
T ss_dssp             TSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEE
T ss_pred             ccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc---cccEEEEECCCCcEE
Confidence                                         1223345667788888877643   578999999998765

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=3.1e-15  Score=120.02  Aligned_cols=217  Identities=10%  Similarity=0.002  Sum_probs=129.6

Q ss_pred             EEEEcCCCCeEEEec----------CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           65 GIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        65 ~i~~s~~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .++|+|||+.|++++          .|+.|.+||..+.+....+..                 +.......-..|..++|
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~-----------------p~~~~~~~g~~p~~~a~  131 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL-----------------PDAPRFSVGPRVHIIGN  131 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE-----------------TTSCSCCBSCCTTSEEE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecC-----------------CccceecccCCccceEE
Confidence            589999999888753          478899999987654332211                 11111122234555677


Q ss_pred             CCCccEEEEEe-CCCCEEEEEcCCCeeeEEeecccccc--cccceEEEEECCCCcEEEEE-cCC----------------
Q 022019          135 DPTSCVFASTT-RDHPIHLWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIFAG-YNK----------------  194 (304)
Q Consensus       135 ~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~-~d~----------------  194 (304)
                      +|||++++++. .++.+.+||+.+++....+..+....  +......+.++++|..++.. .++                
T Consensus       132 SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (368)
T d1mdah_         132 CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN  211 (368)
T ss_dssp             CTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred             CCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccc
Confidence            99999988776 57999999999999887776544210  11122345556666554422 211                


Q ss_pred             --------------------eEEEEEcCCCCccceeeeeeeccc------cccccceeEEEeecCCCcEEEEEecC----
Q 022019          195 --------------------SVRVFDVHRPGRDFEKYSTLKGNK------EGQAGIMSAIAFSPTHTGMLAIGSYS----  244 (304)
Q Consensus       195 --------------------~i~v~d~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~p~~~~~l~~~~~d----  244 (304)
                                          .++++++.....  ..........      .........++++|+++.+++....+    
T Consensus       212 ~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~  289 (368)
T d1mdah_         212 CSSQAAQANYPGMLVWAVASSILQGDIPAAGA--TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC  289 (368)
T ss_dssp             BCSCCEEETTTTEEEECBSSCCEEEECCSSCC--EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT
T ss_pred             cceeecccccCcEEEEecCCCEEEEeecCCce--EEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCcee
Confidence                                122222221100  0000000000      00011234578888555444443333    


Q ss_pred             ----CeEEEEecCCceEeEEeccccCCeEEEEECCCCc-EEEEeeccCCeEEEEecccceee
Q 022019          245 ----QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGN-YLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       245 ----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                          ..|.+||..+++.+..+. +...+.+++|+|||+ +|++.+..|+.|++||..+++.+
T Consensus       290 ~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         290 LAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             TSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             ecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence                258999999999888887 345788999999997 44444337899999999999865

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.3e-14  Score=112.80  Aligned_cols=194  Identities=13%  Similarity=0.166  Sum_probs=125.0

Q ss_pred             eEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEe-CCCCEEE
Q 022019           74 SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT-RDHPIHL  152 (304)
Q Consensus        74 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i  152 (304)
                      .+++++.|++|++|++......               .......+...+..++|       +|||++|++++ .|+.|++
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l---------------~~~~~~~~~~~v~~la~-------spDG~~L~v~~~~d~~i~~   63 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGAL---------------TLTQVVDVPGQVQPMVV-------SPDKRYLYVGVRPEFRVLA   63 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCE---------------EEEEEEECSSCCCCEEE-------CTTSSEEEEEETTTTEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCe---------------EEEEEEcCCCCEeEEEE-------eCCCCEEEEEECCCCeEEE
Confidence            4577889999999998743211               11122344555666655       88999886555 5899999


Q ss_pred             EEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEe
Q 022019          153 WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF  230 (304)
Q Consensus       153 ~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  230 (304)
                      |++...........+.  .....+..++|+|||++|+++  .++.|.+|+....... .. .    ....+...+.++.+
T Consensus        64 ~~i~~~~~~~~~~~~~--~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~-~~-~----~~~~~~~~~~~v~~  135 (333)
T d1ri6a_          64 YRIAPDDGALTFAAES--ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV-GV-V----DVVEGLDGCHSANI  135 (333)
T ss_dssp             EEECTTTCCEEEEEEE--ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE-EE-E----EEECCCTTBCCCEE
T ss_pred             EEEeCCCCcEEEeeec--ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccce-ec-c----cccCCCccceEEEe
Confidence            9998654433332221  111256789999999999954  6789999988653111 11 1    11234455778999


Q ss_pred             ecCCCcEEEEEecCCeEEEEecCCceEeEE------eccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          231 SPTHTGMLAIGSYSQTSAIYREDNMELLYV------LHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       231 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      +|++...+.....+..|.+|+.........      ..........++|++++.+++......+...+|++..
T Consensus       136 s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~  208 (333)
T d1ri6a_         136 SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD  208 (333)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             eecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecc
Confidence            995444444444567899999876432211      1123445688999999999887764667788887644

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.60  E-value=3.2e-13  Score=108.05  Aligned_cols=205  Identities=13%  Similarity=0.019  Sum_probs=139.8

Q ss_pred             ecCCCCceeEEEEcCCCCeEEEe-----cCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCc
Q 022019           56 SSIPNNFLKGIKWSPDGSSFLTS-----SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH  130 (304)
Q Consensus        56 ~~~h~~~V~~i~~s~~~~~l~s~-----~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (304)
                      ...+.+++.+++++|||+.++..     +.++.|.+||..+++....+..                   .....      
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~-------------------~~~~~------   70 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-------------------GFLPN------   70 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC-------------------CCCcc------
Confidence            34688899999999999988764     2346799999887654322111                   11112      


Q ss_pred             cceeCCCccEEEEEe----------CCCCEEEEEcCCCeeeEEeeccccccc--ccceEEEEECCCCcEEEE-E--cCCe
Q 022019          131 MSASDPTSCVFASTT----------RDHPIHLWDATTGLLRCTYRAYDAVDE--ITAAFSVAFNPTGTKIFA-G--YNKS  195 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~-~--~d~~  195 (304)
                       ++|+|||++|++++          .++.|.+||+.+++....+..+.....  ......+.|+++++.++. .  .++.
T Consensus        71 -~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  149 (373)
T d2madh_          71 -PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             -EEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence             34589999998875          357899999999998877665443110  112356888999887763 2  4677


Q ss_pred             EEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccc------cCCeE
Q 022019          196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------EGGVT  269 (304)
Q Consensus       196 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~  269 (304)
                      +.+|+.....        .    ..+.....++.++|++...+++.+.|+.+.+|+...+........+      .....
T Consensus       150 ~~~~~~~~~~--------~----~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (373)
T d2madh_         150 VGLVVQGGSS--------D----DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQ  217 (373)
T ss_pred             eEEeeccCCe--------E----EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceee
Confidence            8888876521        1    1122335688999977777889999999999999888766555422      22345


Q ss_pred             EEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          270 HVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       270 ~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      .+.+++++.+++ .+ .++.+.+|+..+...
T Consensus       218 ~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~  246 (373)
T d2madh_         218 PAQANKSGRIVW-PV-YSGKILQADISAAGA  246 (373)
T ss_pred             eEEECCCceEEE-ec-CCceEEEEEcCCCeE
Confidence            566777776554 44 689999999887643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.58  E-value=3.3e-14  Score=112.37  Aligned_cols=159  Identities=12%  Similarity=0.066  Sum_probs=111.3

Q ss_pred             ceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccce
Q 022019          132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFE  209 (304)
Q Consensus       132 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~  209 (304)
                      .++++++++|++++.+++|.+||+.+++.+.++..+..    ..+.+++|+|||++++ ++ .++.|++||+.+... ..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~----~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~-~~   76 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK----FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TF   76 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC----CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC----CCcceEEECCCCCEEEEEECCCCcEEEEeCccCee-ee
Confidence            36789999999999999999999999999888775432    1567999999999887 55 789999999987421 11


Q ss_pred             eeeeeeccccccccceeEEEeecCCCcEEEEEe------------cCCeEEEEecCCceEeEEeccc--cCCeEEEEECC
Q 022019          210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS------------YSQTSAIYREDNMELLYVLHGQ--EGGVTHVQFSR  275 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~  275 (304)
                      ... .......+...+..++|+| ++.++++++            .++.+.+||..+++....+..+  ...+..+.+++
T Consensus        77 ~~~-~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T d1jmxb_          77 HAN-LSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD  154 (346)
T ss_dssp             EEE-SCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred             eec-ccccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC
Confidence            111 1111122233467899999 555565554            4677899998877655444322  33566777888


Q ss_pred             CCcEEEEeeccCCeEEEEecccceee
Q 022019          276 DGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       276 ~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      ++..++++    +.+.+|++.+++.+
T Consensus       155 ~~~~~~~~----~~~~~~~~~~~~~~  176 (346)
T d1jmxb_         155 DGSLYVAG----PDIYKMDVKTGKYT  176 (346)
T ss_dssp             TSCEEEES----SSEEEECTTTCCEE
T ss_pred             CCEEEEeC----CcceEEEccCCCEE
Confidence            88766543    34889998877554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.44  E-value=2.2e-12  Score=102.31  Aligned_cols=202  Identities=12%  Similarity=0.002  Sum_probs=118.5

Q ss_pred             eeEEEEcCCCCeEEEe-----cCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           63 LKGIKWSPDGSSFLTS-----SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        63 V~~i~~s~~~~~l~s~-----~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      +.-.+.+|||+.++..     ..++.|.+||..+++....+.                .   .....+       +|+||
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~----------------~---g~~~~~-------a~SpD   57 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID----------------G---GFLPNP-------VVADD   57 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE----------------E---CSSCEE-------EECTT
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE----------------C---CCCCce-------EEcCC
Confidence            3334568999988764     346689999998764322111                0   111123       45899


Q ss_pred             ccEEEEEe----------CCCCEEEEEcCCCeeeEEeecccccc--cccceEEEEECCCCcEEEE-E--cCCeEEEEEcC
Q 022019          138 SCVFASTT----------RDHPIHLWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIFA-G--YNKSVRVFDVH  202 (304)
Q Consensus       138 ~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~-~--~d~~i~v~d~~  202 (304)
                      |++|++++          .|+.|++||+.+++....+..+....  .......+.|+|+++++++ .  .+..+.+||..
T Consensus        58 g~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~  137 (355)
T d2bbkh_          58 GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE  137 (355)
T ss_dssp             SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred             CCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecC
Confidence            99887653          47899999999999887776543211  1123456899999998884 3  56789999997


Q ss_pred             CCCccceeeeeeecccc---ccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcE
Q 022019          203 RPGRDFEKYSTLKGNKE---GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNY  279 (304)
Q Consensus       203 ~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  279 (304)
                      ... ..   ..+.....   ........+.+++++..+++....++.+.+++.....     ..+...+....+.+++..
T Consensus       138 ~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  208 (355)
T d2bbkh_         138 GKA-FK---RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGR  208 (355)
T ss_dssp             TTE-EE---EEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTE
T ss_pred             CCc-Ee---eEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCe
Confidence            631 11   11110000   0011122344444322222222333334444332221     123334556677888888


Q ss_pred             EEEeeccCCeEEEEeccccee
Q 022019          280 LYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       280 l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      ++.++ .++.+++|++..++.
T Consensus       209 ~~~~~-~~~~~~v~~~~~~~~  228 (355)
T d2bbkh_         209 LVWPT-YTGKIHQIDLSSGDA  228 (355)
T ss_dssp             EEEEB-TTSEEEEEECTTSSC
T ss_pred             EEEec-CCCeEEEEecCCCcE
Confidence            88888 899999999988754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.43  E-value=6.6e-12  Score=103.65  Aligned_cols=129  Identities=14%  Similarity=0.096  Sum_probs=85.5

Q ss_pred             ceeeecCCCcccccccceeeeecCCCCceeEEEEcCCCCeEEEecC---------CCeEEEeeCCCCCCccccccccccc
Q 022019           35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSE---------DKTLRIFSLPENGISYDVNACSLAK  105 (304)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s~~~~~l~s~~~---------dg~v~vwd~~~~~~~~~~~~~~~~~  105 (304)
                      .+..|+........... -..+..|...|.++.|||||++|+.++.         ++.+.|||+.+++...         
T Consensus        37 ~~~~~~~~t~~~~~~~~-~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~---------  106 (470)
T d2bgra1          37 NILVFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT---------  106 (470)
T ss_dssp             CEEEEETTTCCEEEEEC-TTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---------
T ss_pred             cEEEEECCCCCEEEEEc-hhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccc---------
Confidence            35667777665443211 1255677889999999999999998743         5678899998764321         


Q ss_pred             cCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccccc-------------cc
Q 022019          106 DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV-------------DE  172 (304)
Q Consensus       106 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------~~  172 (304)
                               ...+...+....|       ||||+.+|... ++.+++|++.+++...........             ..
T Consensus       107 ---------l~~~~~~~~~~~~-------SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~  169 (470)
T d2bgra1         107 ---------EERIPNNTQWVTW-------SPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (470)
T ss_dssp             ---------SSCCCTTEEEEEE-------CSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             ---------cccCCcccccccc-------ccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeee
Confidence                     1112345666666       88999999865 667999999888765433221110             01


Q ss_pred             ccceEEEEECCCCcEEEE
Q 022019          173 ITAAFSVAFNPTGTKIFA  190 (304)
Q Consensus       173 ~~~v~~i~~~~~~~~l~~  190 (304)
                      ......+.|+|||+.|+.
T Consensus       170 ~~~~~~~~wSPDGk~ia~  187 (470)
T d2bgra1         170 FSAYSALWWSPNGTFLAY  187 (470)
T ss_dssp             SSSSBCEEECTTSSEEEE
T ss_pred             cCCccccEECCCCCccce
Confidence            123456889999999994

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.39  E-value=1.3e-10  Score=92.39  Aligned_cols=169  Identities=11%  Similarity=0.021  Sum_probs=102.0

Q ss_pred             CccceeCCCccEEEEEeC-CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCC
Q 022019          129 PHMSASDPTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPG  205 (304)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~  205 (304)
                      ++.+.|+|+|+++++++. ...|.+|+........................+.|+|++++++ +. .++.|.+|++....
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            344566999998888764 3478888765432221111111111223678999999999998 45 78999999997643


Q ss_pred             ccc-eeeeeeec----------cccccccceeEEEeecCCCcEEEEEe-cCC-----eEEEEecCCceEeEE------ec
Q 022019          206 RDF-EKYSTLKG----------NKEGQAGIMSAIAFSPTHTGMLAIGS-YSQ-----TSAIYREDNMELLYV------LH  262 (304)
Q Consensus       206 ~~~-~~~~~~~~----------~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg-----~i~i~d~~~~~~~~~------~~  262 (304)
                      ... ........          ...........+.++| ++++|+++. .+.     .|..|++.....+..      ..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             ceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            221 11111110          0112223456789999 555555543 222     377787754322211      11


Q ss_pred             cccCCeEEEEECC-CCcEEEEeeccCCeEEEEecccc
Q 022019          263 GQEGGVTHVQFSR-DGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       263 ~~~~~v~~~~~~~-~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      ........++++| +|++|++++..++.|.+|+++..
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            2234567799998 89999888768899999988654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.37  E-value=1.7e-11  Score=98.19  Aligned_cols=211  Identities=9%  Similarity=0.098  Sum_probs=122.6

Q ss_pred             EEEecCCCeEEEeeCCCCCCccccccccccccCCcc----ceEEEeecCCeEEEEeecCc--cceeCCCccEEEEEe-CC
Q 022019           75 FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSY----EASLVVTEGESVYDFCWFPH--MSASDPTSCVFASTT-RD  147 (304)
Q Consensus        75 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~l~~~~-~d  147 (304)
                      ++|++.+|.|++|++.++.....+............    ...+..........-..+|.  ...++|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            678889999999999877654443221110000000    00000000000000001111  123468999886664 67


Q ss_pred             CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE--EEcCCeE------------------EEEEcCCCCcc
Q 022019          148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSV------------------RVFDVHRPGRD  207 (304)
Q Consensus       148 g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~--~~~d~~i------------------~v~d~~~~~~~  207 (304)
                      ..|.++|+.+++....+.....    ..+..++|+|+++.++  ++.+..+                  ..+|..+... 
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g----~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v-  168 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNV----QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV-  168 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTC----CCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE-
T ss_pred             CEEEEEECCCCcEeeEEecCCC----CCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee-
Confidence            8899999999988877664322    2678999999998543  4344333                  3456554211 


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecC-----------------------------------------Ce
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----------------------------------------QT  246 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----------------------------------------g~  246 (304)
                         ..++.     -...+..+.|+| ++.++++.+.+                                         +.
T Consensus       169 ---~~qI~-----v~~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v  239 (441)
T d1qnia2         169 ---AWQVI-----VDGNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKV  239 (441)
T ss_dssp             ---EEEEE-----ESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred             ---eEEEe-----cCCCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCc
Confidence               11111     112367889999 55566666543                                         23


Q ss_pred             EEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          247 SAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       247 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      +.+++....+.+..+..... ...+.++|||+++++++..+++|.|||+++.++
T Consensus       240 ~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~  292 (441)
T d1qnia2         240 PVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD  292 (441)
T ss_dssp             CEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH
T ss_pred             EEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhh
Confidence            34444444455666665444 478999999999887766999999999987544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.35  E-value=6.7e-12  Score=100.59  Aligned_cols=129  Identities=12%  Similarity=0.056  Sum_probs=82.4

Q ss_pred             CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-E-cCCeEEEEEcCCCCccce----eeeeeecccccc
Q 022019          148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNKSVRVFDVHRPGRDFE----KYSTLKGNKEGQ  221 (304)
Q Consensus       148 g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-~d~~i~v~d~~~~~~~~~----~~~~~~~~~~~~  221 (304)
                      +.+.+++.........++...      ....+.++|||+++++ + .+++|.+||+++....+.    ....+...... 
T Consensus       238 ~v~vvd~~~~~~v~~~IPvgk------sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~-  310 (441)
T d1qnia2         238 KVPVVDGRGESEFTRYIPVPK------NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPEL-  310 (441)
T ss_dssp             CCCEEECSSSCSSEEEECCBS------SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBC-
T ss_pred             CcEEEEcccCCceEEEEeCCC------CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccc-
Confidence            444555544444555555433      4568999999999984 5 899999999865211100    00111111111 


Q ss_pred             ccceeEEEeecCCCcEEEEEecCCeEEEEecCCc----------eEeEEe-----ccccCCeEEEEECCCCcEEEEee
Q 022019          222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM----------ELLYVL-----HGQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       222 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                      .-.....+|++ .+..+.+...|..|..|++...          ..+..+     .+|...+.+..++|||+||++++
T Consensus       311 glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         311 GLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             CSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             ccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            11134568999 7778888889999999997421          233334     46777777788999999999994

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.32  E-value=5.7e-10  Score=86.28  Aligned_cols=204  Identities=12%  Similarity=0.064  Sum_probs=129.9

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      .+..++++|||+++++...+++|..|+.....                   .........+..++       ++++|+++
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-------------------~~~~~~~~~~~gla-------~~~dG~l~   82 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-------------------QIHATVEGKVSGLA-------FTSNGDLV   82 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-------------------EEEEECSSEEEEEE-------ECTTSCEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-------------------EEEEcCCCCcceEE-------EcCCCCeE
Confidence            58899999999999999999999888765221                   12222234444554       48899999


Q ss_pred             EEEeCCCCEEEEEcCCCe--eeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeee--c
Q 022019          142 ASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK--G  216 (304)
Q Consensus       142 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~--~  216 (304)
                      ++...++.+..++.....  ........    .......+.+.++++++++. .++.+..+|...............  .
T Consensus        83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  158 (302)
T d2p4oa1          83 ATGWNADSIPVVSLVKSDGTVETLLTLP----DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS  158 (302)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECT----TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred             EEecCCceEEEEEecccccceeeccccC----CccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcccee
Confidence            999888889888875432  22211111    11267899999999888865 788888888765321111000000  0


Q ss_pred             cccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEe--ccccCCeEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL--HGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       217 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                      ...........+.++.  ..++++.+..+.|..++..........  .........++++++|++.++.. .++.|..++
T Consensus       159 ~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~-~~~~V~~i~  235 (302)
T d2p4oa1         159 NSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH-IYNSVVRIA  235 (302)
T ss_dssp             STTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB-TTCCEEEEC
T ss_pred             eccCcccccccccccC--CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEc-CCCcEEEEC
Confidence            0111122345566654  557778888899999987654322111  11233456799999999777776 788899988


Q ss_pred             cccc
Q 022019          295 LRKA  298 (304)
Q Consensus       295 ~~~~  298 (304)
                      ....
T Consensus       236 p~G~  239 (302)
T d2p4oa1         236 PDRS  239 (302)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            7654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.30  E-value=9.8e-09  Score=78.20  Aligned_cols=224  Identities=13%  Similarity=0.229  Sum_probs=134.6

Q ss_pred             CceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCcccccccc-----------ccccCCccce---------EE-Ee-ec
Q 022019           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS-----------LAKDQDSYEA---------SL-VV-TE  118 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-----------~~~~~~~~~~---------~~-~~-~~  118 (304)
                      .....|+++++|+.+++-...+.|++||.+. .....+....           ..........         .+ .. ..
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            3468999999999888877788999999753 2211110000           0000000000         00 01 01


Q ss_pred             CCeEEEE----eecCccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC
Q 022019          119 GESVYDF----CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN  193 (304)
Q Consensus       119 ~~~v~~~----~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d  193 (304)
                      +..+..+    ...|..+++.+++.++++....+.+.+++.. ++.+..+....   +......++++++++.+++. ..
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~---~~~~~~~i~~d~~g~i~v~d~~~  177 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK---HLEFPNGVVVNDKQEIFISDNRA  177 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT---TCSSEEEEEECSSSEEEEEEGGG
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccc---cccccceeeeccceeEEeeeccc
Confidence            1111111    0123445667777777777666777777743 44444443222   22366789999999887776 88


Q ss_pred             CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec-CCeEEEEecCCceEeEEeccc--cCCeEE
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAIYREDNMELLYVLHGQ--EGGVTH  270 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~--~~~v~~  270 (304)
                      +.|++||...  ..   +..+-  ..+.......++++| ++.++++-+. ++.|.+|+. +++.+.++...  ......
T Consensus       178 ~~V~~~d~~G--~~---~~~~g--~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~  248 (279)
T d1q7fa_         178 HCVKVFNYEG--QY---LRQIG--GEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFD  248 (279)
T ss_dssp             TEEEEEETTC--CE---EEEES--CTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEE
T ss_pred             cceeeeecCC--ce---eeeec--ccccccCCccccccc-CCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeE
Confidence            9999999753  11   12221  123444578899999 5667666544 457999995 57777666432  235789


Q ss_pred             EEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          271 VQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       271 ~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      +++.|+|.+ +++. .+.+|++|.......
T Consensus       249 vav~~dG~l-~V~~-~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         249 VALMDDGSV-VLAS-KDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEEETTTEE-EEEE-TTTEEEEEECSCCCC
T ss_pred             EEEeCCCcE-EEEe-CCCeEEEEEeeeecC
Confidence            999999975 5556 689999999876543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.30  E-value=1.4e-09  Score=86.25  Aligned_cols=214  Identities=12%  Similarity=0.142  Sum_probs=123.1

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      .....+.-|+|+|++++|+++.. +.+..|.+......                ....      .....-.|..++++++
T Consensus        37 ~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~----------------~~~~------~~~~~~~p~~v~~~~~   93 (365)
T d1jofa_          37 PQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEI----------------VHEA------SHPIGGHPRANDADTN   93 (365)
T ss_dssp             CTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEE----------------EEEE------EEECCSSGGGGCTTSC
T ss_pred             cCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCe----------------EEEe------eecCCCCcEEEEECCC
Confidence            34555778999999999887754 56777776522100                0000      0111224666777888


Q ss_pred             ccEEEE--Ee-CCCCEEEEEcCC-CeeeEEeeccc-----------ccccccceEEEEECCCCcEEEEE--cCCeEEEEE
Q 022019          138 SCVFAS--TT-RDHPIHLWDATT-GLLRCTYRAYD-----------AVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFD  200 (304)
Q Consensus       138 ~~~l~~--~~-~dg~i~i~d~~~-~~~~~~~~~~~-----------~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~v~d  200 (304)
                      ++.+..  +. ..++|..+.+.. +.....+....           .......+.++.|+|+|+++++.  ....|.+|+
T Consensus        94 ~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~  173 (365)
T d1jofa_          94 TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHR  173 (365)
T ss_dssp             CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            875433  22 245666655432 11111111000           00112256799999999998854  567899998


Q ss_pred             cCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceE--eEE---ec-------------
Q 022019          201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL--LYV---LH-------------  262 (304)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~---~~-------------  262 (304)
                      ....+.. ........  .......+.++|+|++..++++...++.|.+|++...+.  +..   +.             
T Consensus       174 ~~~~g~~-~~~~~~~~--~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (365)
T d1jofa_         174 KLASGEV-ELVGSVDA--PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPET  250 (365)
T ss_dssp             ECTTSCE-EEEEEEEC--SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTT
T ss_pred             ccCCCce-eeccceee--cCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccccccccccc
Confidence            7653322 11122211  122345789999996555556666789999999865432  111   11             


Q ss_pred             -cccCCeEEEEECCCCcEEEEeeccCC-----eEEEEeccc
Q 022019          263 -GQEGGVTHVQFSRDGNYLYTGGRKDP-----YILCWDLRK  297 (304)
Q Consensus       263 -~~~~~v~~~~~~~~~~~l~~~~~~d~-----~i~vwd~~~  297 (304)
                       .+......+.++|||++|+++.+.+.     .|..|++..
T Consensus       251 ~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~  291 (365)
T d1jofa_         251 GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD  291 (365)
T ss_dssp             SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred             ccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecC
Confidence             11123567899999999998863333     377777654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.29  E-value=7e-09  Score=80.38  Aligned_cols=207  Identities=11%  Similarity=0.121  Sum_probs=126.2

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      .-..++|.++|+.++++...+.+...+.+...........                .+...    -.|+.++++++|++.
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~----------------~g~~~----~~pndl~~d~~G~ly  131 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDS----------------EGRRM----QGCNDCAFDYEGNLW  131 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCT----------------TSCBC----BCCCEEEECTTSCEE
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccc----------------ccccc----CCCcEEEECCCCCEE
Confidence            3568999999998887777677888887643221100000                00000    023444557788877


Q ss_pred             EEEeC---------------CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCc----EEE-EE-cCCeEEEEE
Q 022019          142 ASTTR---------------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT----KIF-AG-YNKSVRVFD  200 (304)
Q Consensus       142 ~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~----~l~-~~-~d~~i~v~d  200 (304)
                      ++-..               .|.|+.++. .++.........      ..+.++|+|++.    .|+ +. ..+.|..||
T Consensus       132 vtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~~~------~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d  204 (314)
T d1pjxa_         132 ITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAFQ------FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYD  204 (314)
T ss_dssp             EEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEEES------SEEEEEEEECTTSCEEEEEEEETTTTEEEEEE
T ss_pred             EecCccCcccccccceeccCCceEEEEee-cCceeEeeCCcc------eeeeeEECCCCCcceeEEEEEeecccceEEee
Confidence            76432               233444443 233332222111      446899988764    455 43 778899999


Q ss_pred             cCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEE
Q 022019          201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYL  280 (304)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  280 (304)
                      +...+.. ...................+++.+ +++++++....+.|.+||.+.+..+..+.......++++|.|+++.|
T Consensus       205 ~~~~g~~-~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~l  282 (314)
T d1pjxa_         205 IKGPAKI-ENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTI  282 (314)
T ss_dssp             EEETTEE-EEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEE
T ss_pred             ccCcccc-ceeeEEEEccccccccceeeEEec-CCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEE
Confidence            8653321 111111111111223356799999 67777777788999999998888777777666778999999999866


Q ss_pred             EEeeccCCeEEEEeccc
Q 022019          281 YTGGRKDPYILCWDLRK  297 (304)
Q Consensus       281 ~~~~~~d~~i~vwd~~~  297 (304)
                      +.+...+|.|...++..
T Consensus       283 yVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         283 FVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEETTTTEEEEEECSS
T ss_pred             EEEECCCCcEEEEECCC
Confidence            55543788888888754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.29  E-value=6.7e-11  Score=97.51  Aligned_cols=148  Identities=13%  Similarity=0.115  Sum_probs=103.4

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-c---------CCeEEEEEcCCC
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y---------NKSVRVFDVHRP  204 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~---------d~~i~v~d~~~~  204 (304)
                      .++++++..  .|+.+.+||+.+++....+..+....+...|.++.|+|||++|+.+ .         ++.+.+||+.++
T Consensus        25 ~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~  102 (470)
T d2bgra1          25 ISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR  102 (470)
T ss_dssp             CSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             CCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC
Confidence            567776653  5788999999999877666555444455578999999999999843 2         467899999873


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccc------------------cC
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ------------------EG  266 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------~~  266 (304)
                      .     ..    ....+...+..+.|+| ++..+|.. .++.+++|+..+++.......+                  .+
T Consensus       103 ~-----~~----~l~~~~~~~~~~~~SP-DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~  171 (470)
T d2bgra1         103 Q-----LI----TEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (470)
T ss_dssp             E-----EC----CSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             c-----cc----ccccCCcccccccccc-CcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecC
Confidence            1     11    1245666789999999 56666664 5778999999888765443221                  12


Q ss_pred             CeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          267 GVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       267 ~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      ....+.|||||++|+.....+..+..|.+
T Consensus       172 ~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         172 AYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             SSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             CccccEECCCCCccceeEecCCcCceEEE
Confidence            34568899999999998722333444433

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=9.5e-09  Score=77.70  Aligned_cols=200  Identities=12%  Similarity=0.087  Sum_probs=112.0

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCC-C--eEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSED-K--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~d-g--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+...+...+|||||+.||-.... +  .+.+.+.....                  ...............|       
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~-------   90 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------------------VRQVASFPRHNGAPAF-------   90 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC------------------EEEEECCSSCEEEEEE-------
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc------------------eeEEeeeeccccccee-------
Confidence            456678899999999999865432 2  34444444221                  1123333455556666       


Q ss_pred             CCCccEEEEEeC-CCCEEEEEc--CCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCe--EEEEEcCCCCcc
Q 022019          135 DPTSCVFASTTR-DHPIHLWDA--TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKS--VRVFDVHRPGRD  207 (304)
Q Consensus       135 ~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~--i~v~d~~~~~~~  207 (304)
                      +|+|..++.... ++...++..  .............      ......+++++..++ ++ .++.  |.+.++...  .
T Consensus        91 spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~--~  162 (269)
T d2hqsa1          91 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS------NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG--A  162 (269)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS------CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--C
T ss_pred             cCCCCeeeEeeecCCccceeecccccccceeeeeccc------cccccccccccccceecccccCCceEeeeecccc--c
Confidence            788888777654 333333332  2222222211111      344567778777666 44 5554  455555432  1


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEE--ecCCceEeEEeccccCCeEEEEECCCCcEEEEeec
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY--REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGR  285 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  285 (304)
                      ...   .    ...........|+|++..++.+....+...+|  +...+..  .+..+........|+|||++|+..+.
T Consensus       163 ~~~---~----~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         163 PQR---I----TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             CEE---C----CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred             cee---e----ecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEc
Confidence            111   1    22334466789999555444444445554444  5444433  33335566788999999999876652


Q ss_pred             c--CCeEEEEecccce
Q 022019          286 K--DPYILCWDLRKAV  299 (304)
Q Consensus       286 ~--d~~i~vwd~~~~~  299 (304)
                      .  ...|.++++..+.
T Consensus       234 ~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         234 QGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             ETTEEEEEEEETTSCC
T ss_pred             CCCCcEEEEEECCCCC
Confidence            2  3468889987664

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=3.1e-09  Score=80.14  Aligned_cols=198  Identities=10%  Similarity=0.053  Sum_probs=124.4

Q ss_pred             CceeEEEEcCCCCeEEEe-cCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           61 NFLKGIKWSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      ..-.+|+++++|+..++. +..+.+..++.......                   ....     .-...|..++++++++
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~-------------------~~~~-----~~~~~p~gvav~~~g~   69 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-------------------VLPF-----NGLYQPQGLAVDGAGT   69 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEE-------------------ECCC-----CSCCSCCCEEECTTCC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE-------------------Eecc-----CCccCceEEEEcCCCC
Confidence            345799999999966654 45677777765532110                   0000     0112466677788999


Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccc
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK  218 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~  218 (304)
                      ++++....+.+++++-.+..........      ..+.+++++++++++++. .+..+..++........   ..     
T Consensus        70 i~v~d~~~~~i~~~~~~~~~~~~~~~~~------~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~---~~-----  135 (260)
T d1rwia_          70 VYVTDFNNRVVTLAAGSNNQTVLPFDGL------NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV---LP-----  135 (260)
T ss_dssp             EEEEETTTEEEEECTTCSCCEECCCCSC------CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE---CC-----
T ss_pred             EEEeeeeeceeeeeeeccceeeeeeeee------eecccccccccceeEeeccccccccccccccceeee---ee-----
Confidence            8877777666766654444332222111      256799999999887765 66777777765421110   00     


Q ss_pred             cccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       219 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      .........++++| .+.++++...++.|..+|.............-.....++++++|.++++.. ..+.|..++....
T Consensus       136 ~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~-~~~~i~~~~~~~~  213 (260)
T d1rwia_         136 FTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGST  213 (260)
T ss_dssp             CCSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTTEEEEECTTCS
T ss_pred             ecccCCcceeeecC-CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeec-CCCEEEEEeCCCC
Confidence            11123357899999 667888888889999999875544333333445678999999998777666 7888888877554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.14  E-value=3.1e-07  Score=71.09  Aligned_cols=197  Identities=10%  Similarity=0.039  Sum_probs=114.3

Q ss_pred             CCCCceeEEEEcCCCCeEEEecCC----CeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccce
Q 022019           58 IPNNFLKGIKWSPDGSSFLTSSED----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA  133 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  133 (304)
                      ........|+++++|+++++...+    +.+...+............               .........       ++
T Consensus        79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~---------------~~~~~~~nd-------~~  136 (319)
T d2dg1a1          79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED---------------LSTAYCIDD-------MV  136 (319)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS---------------SSSCCCEEE-------EE
T ss_pred             CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccC---------------CCcccCCcc-------ee
Confidence            445567889999999877765332    2344444332221100000               000112233       34


Q ss_pred             eCCCccEEEEEeCC------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEcCCCC
Q 022019          134 SDPTSCVFASTTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPG  205 (304)
Q Consensus       134 ~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~v~d~~~~~  205 (304)
                      ++++|++.++....      +.+..++...+.........      ...+.++|+|+++.|+.+  ..+.|+.||+...+
T Consensus       137 ~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~------~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g  210 (319)
T d2dg1a1         137 FDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI------SVANGIALSTDEKVLWVTETTANRLHRIALEDDG  210 (319)
T ss_dssp             ECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             EEeccceeecccccccccCcceeEEEecccceeEEEeecc------ceeeeeeeccccceEEEecccCCceEEEEEcCCC
Confidence            47888877664332      23555554433322222211      145789999999877743  78899999987654


Q ss_pred             ccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec------cccCCeEEEEECCCCcE
Q 022019          206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------GQEGGVTHVQFSRDGNY  279 (304)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~~  279 (304)
                      ......................+++++ +++++++....+.|.+||. .++.+..+.      ++...+++++|.|++..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~  288 (319)
T d2dg1a1         211 VTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQ  288 (319)
T ss_dssp             SSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred             ceeccccceeeeccCCccceeeeeEcC-CCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCE
Confidence            333222211111111122356799999 6778888888999999996 678777765      23346789999998877


Q ss_pred             EEEee
Q 022019          280 LYTGG  284 (304)
Q Consensus       280 l~~~~  284 (304)
                      +++..
T Consensus       289 ~~~t~  293 (319)
T d2dg1a1         289 LIICS  293 (319)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            76654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.13  E-value=1.7e-08  Score=75.99  Aligned_cols=195  Identities=10%  Similarity=0.052  Sum_probs=121.6

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      ....++++++|..+++....+.+++++-.+.......                  ........+       +++++++++
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~------------------~~~~~p~~i-------avd~~g~i~  112 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF------------------DGLNYPEGL-------AVDTQGAVY  112 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC------------------CSCCSEEEE-------EECTTCCEE
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee------------------eeeeecccc-------cccccceeE
Confidence            4578999999998888777777777654432211100                  001222333       447788877


Q ss_pred             EEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccccc
Q 022019          142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEG  220 (304)
Q Consensus       142 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  220 (304)
                      ++-.....+..++....... ......    .....+++++|+++.+++. .++.|..+|......     ....   ..
T Consensus       113 v~d~~~~~~~~~~~~~~~~~-~~~~~~----~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~-----~~~~---~~  179 (260)
T d1rwia_         113 VADRGNNRVVKLAAGSKTQT-VLPFTG----LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-----VVLP---FT  179 (260)
T ss_dssp             EEEGGGTEEEEECTTCSSCE-ECCCCS----CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE-----EECC---CS
T ss_pred             eeccccccccccccccceee-eeeecc----cCCcceeeecCCCCEeeecccccccccccccccee-----eeee---cc
Confidence            77666666777776543322 111111    1145689999999877765 778899999765321     1111   12


Q ss_pred             cccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-cccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       221 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      .......+++++ ++.++++...++.|..++...... ..+. ..-.....|+++++|..+++-. .+++|+.++...
T Consensus       180 ~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~vad~-~~~rI~~i~~~~  254 (260)
T d1rwia_         180 DITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADR-GNDRVVKLTSLE  254 (260)
T ss_dssp             SCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCEEEEEG-GGTEEEEECCCG
T ss_pred             ccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCEEEEEC-CCCEEEEEeCCC
Confidence            233467899999 677888887888899888654432 2222 2224568999999998766656 778887776644

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.02  E-value=2.4e-07  Score=71.15  Aligned_cols=200  Identities=12%  Similarity=0.057  Sum_probs=124.0

Q ss_pred             eecCCCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCcccee
Q 022019           55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS  134 (304)
Q Consensus        55 ~~~~h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  134 (304)
                      .+......+.+++|+++|+++++...++.+.+|+.......              ...............+.+       
T Consensus        62 ~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~n~i~~-------  120 (302)
T d2p4oa1          62 IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT--------------VETLLTLPDAIFLNGITP-------  120 (302)
T ss_dssp             EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC--------------EEEEEECTTCSCEEEEEE-------
T ss_pred             EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc--------------eeeccccCCccccceeEE-------
Confidence            34455678999999999999888888888888876532110              000111122233444444       


Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccc-----cccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCcc
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA-----VDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD  207 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~  207 (304)
                      .++++++++.+.++.+..++...+...........     .........+.++.  ..++ +. ..+.|+.+++......
T Consensus       121 ~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~  198 (302)
T d2p4oa1         121 LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKP  198 (302)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCB
T ss_pred             ccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCCCCeEEeccccccccc
Confidence            77899999888889899999887654332221110     01112455677654  3444 43 8889999998754322


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce-EeEEeccccCCeEEEEE---CCCCcEEEEe
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGGVTHVQF---SRDGNYLYTG  283 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~---~~~~~~l~~~  283 (304)
                      .. ....     ........+++++ ++.++++...++.|..++..... .+......-...++++|   ++|++.|+.+
T Consensus       199 ~~-~~~~-----~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvt  271 (302)
T d2p4oa1         199 GE-PEIF-----VEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV  271 (302)
T ss_dssp             CC-CEEE-----EESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred             cc-cccc-----cCCCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence            11 1111     1122356799999 66788877788999999875432 23333333456899999   7788888776


Q ss_pred             e
Q 022019          284 G  284 (304)
Q Consensus       284 ~  284 (304)
                      +
T Consensus       272 t  272 (302)
T d2p4oa1         272 T  272 (302)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.02  E-value=4.1e-07  Score=70.17  Aligned_cols=209  Identities=12%  Similarity=0.098  Sum_probs=122.3

Q ss_pred             CCceeEEEEcCCCCeEEEecC-------CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSE-------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~-------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      -...-+++|.|+|+++++...       +|+|..||..++......                    ..........|..+
T Consensus        17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~--------------------~~~~~~~~g~P~Gl   76 (314)
T d1pjxa_          17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC--------------------KPEVNGYGGIPAGC   76 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE--------------------CCEETTEECCEEEE
T ss_pred             CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEE--------------------CCccccCCCcceeE
Confidence            334667899999997776432       467888887754321100                    01111112235566


Q ss_pred             eeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEc----------------CCeE
Q 022019          133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY----------------NKSV  196 (304)
Q Consensus       133 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~----------------d~~i  196 (304)
                      +++++++.++++...+.|..++...+.... .............+.++++++|++.++..                .|.|
T Consensus        77 ~~~~dg~~l~vad~~~~i~~~~~~g~~~~~-~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v  155 (314)
T d1pjxa_          77 QCDRDANQLFVADMRLGLLVVQTDGTFEEI-AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI  155 (314)
T ss_dssp             EECSSSSEEEEEETTTEEEEEETTSCEEEC-CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred             EEeCCCCEEEEEECCCeEEEEeCCCcEEEE-EeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceE
Confidence            778999888888777778888876554322 21111111112457899999998877642                1234


Q ss_pred             EEEEcCCCCccceeeeeeeccccccccceeEEEeecCCC----cEEEEEecCCeEEEEecCCceE------eEEecc-cc
Q 022019          197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT----GMLAIGSYSQTSAIYREDNMEL------LYVLHG-QE  265 (304)
Q Consensus       197 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~~~~~dg~i~i~d~~~~~~------~~~~~~-~~  265 (304)
                      +.++..  +......        ........++|+|++.    .++++-+..+.|..||+.....      ...+.+ ..
T Consensus       156 ~~~~~d--g~~~~~~--------~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~  225 (314)
T d1pjxa_         156 YCFTTD--GQMIQVD--------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             EEECTT--SCEEEEE--------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             EEEeec--CceeEee--------CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc
Confidence            444332  2111111        1112246789998432    3556667788999998753322      122222 12


Q ss_pred             CCeEEEEECCCCcEEEEeeccCCeEEEEeccccee
Q 022019          266 GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQ  300 (304)
Q Consensus       266 ~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~  300 (304)
                      .....+++.++|+..++.. ..+.|.+||.+.++.
T Consensus       226 ~~pdGiavD~~GnlyVa~~-~~g~I~~~dp~~g~~  259 (314)
T d1pjxa_         226 GGADGMDFDEDNNLLVANW-GSSHIEVFGPDGGQP  259 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEE-TTTEEEEECTTCBSC
T ss_pred             ccceeeEEecCCcEEEEEc-CCCEEEEEeCCCCEE
Confidence            2456899999999777666 789999999877643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.00  E-value=8.9e-07  Score=67.59  Aligned_cols=195  Identities=12%  Similarity=0.092  Sum_probs=121.4

Q ss_pred             CCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCcc
Q 022019           60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC  139 (304)
Q Consensus        60 ~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  139 (304)
                      ...+.++++.++|.++++ +.+ .+.++|..+++...-.....     .        .......++       .+.|+|+
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~-----~--------~~~~~~nd~-------~vd~~G~  115 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELES-----D--------LPGNRSNDG-------RMHPSGA  115 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSST-----T--------CTTEEEEEE-------EECTTSC
T ss_pred             CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeec-----C--------CCcccceee-------EECCCCC
Confidence            456889999999877765 444 58889988765421111000     0        001123333       3477888


Q ss_pred             EEEEEeC----CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeee
Q 022019          140 VFASTTR----DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       140 ~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      +.++...    .+.-.+|.+..++.........      ....+.|+++++.++ +. ..+.|..|++............
T Consensus       116 iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~------~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~  189 (295)
T d2ghsa1         116 LWIGTMGRKAETGAGSIYHVAKGKVTKLFADIS------IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE  189 (295)
T ss_dssp             EEEEEEETTCCTTCEEEEEEETTEEEEEEEEES------SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred             EEEEeccccccccceeEeeecCCcEEEEeeccC------CcceeeecCCCceEEEeecccceeeEeeecccccccccceE
Confidence            7766543    2345677777776554443322      457899999998777 43 6788999988643221111011


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEEC-CCCcEEEEee
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFS-RDGNYLYTGG  284 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  284 (304)
                      ......+..+....+++.. ++.+.++.-..+.|..||. .++.+..+......+++++|- ||.+.|+..+
T Consensus       190 ~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         190 VFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             EEeccCcccccccceEEcC-CCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            1111123344577899998 6667776667789999995 688888887655679999994 7777776543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.98  E-value=2.4e-06  Score=65.92  Aligned_cols=205  Identities=12%  Similarity=0.106  Sum_probs=121.4

Q ss_pred             CCCceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCc
Q 022019           59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS  138 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  138 (304)
                      ....+..++|.++|++.++-...+.|..|+.+.+....                 ........       |..++++++|
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~-----------------~~~~~~~~-------p~gla~~~dG   93 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR-----------------PFVSHKAN-------PAAIKIHKDG   93 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-----------------EEECSSSS-------EEEEEECTTS
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEE-----------------EEeCCCCC-------eeEEEECCCC
Confidence            33446789999999987777788999888876442210                 11111122       3334558899


Q ss_pred             cEEEEEeCC----CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcC-------CeEEEEEcCCCCcc
Q 022019          139 CVFASTTRD----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN-------KSVRVFDVHRPGRD  207 (304)
Q Consensus       139 ~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d-------~~i~v~d~~~~~~~  207 (304)
                      +++++...+    +.+...+...+..........   ....+..+.++++|++.++...       +.+..++...  ..
T Consensus        94 ~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg--~~  168 (319)
T d2dg1a1          94 RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS---TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF--RT  168 (319)
T ss_dssp             CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS---SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS--CC
T ss_pred             CEEEEecCCCccceeEEEEcCCCceeeeeccCCC---cccCCcceeEEeccceeecccccccccCcceeEEEeccc--ce
Confidence            888775432    234445544444433332211   1225778999999987775422       2344444332  22


Q ss_pred             ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc-e---EeE-E---eccccCCeEEEEECCCCcE
Q 022019          208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-E---LLY-V---LHGQEGGVTHVQFSRDGNY  279 (304)
Q Consensus       208 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~---~~~-~---~~~~~~~v~~~~~~~~~~~  279 (304)
                      ...   +.    ........++|+|++..++++-+..+.|+.||+... .   ... .   ..........+++.++|++
T Consensus       169 ~~~---~~----~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l  241 (319)
T d2dg1a1         169 VTP---II----QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL  241 (319)
T ss_dssp             EEE---EE----EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE
T ss_pred             eEE---Ee----eccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCE
Confidence            111   11    112235789999965556677778899999987532 1   111 1   1111223578999999997


Q ss_pred             EEEeeccCCeEEEEecccceee
Q 022019          280 LYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       280 l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      .++.. ..+.|.+|+. +|+.+
T Consensus       242 ~Va~~-~~g~V~~~~p-~G~~l  261 (319)
T d2dg1a1         242 YVAMY-GQGRVLVFNK-RGYPI  261 (319)
T ss_dssp             EEEEE-TTTEEEEECT-TSCEE
T ss_pred             EEEEc-CCCEEEEECC-CCcEE
Confidence            77666 7899999996 56543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.88  E-value=1.6e-08  Score=80.26  Aligned_cols=124  Identities=10%  Similarity=-0.110  Sum_probs=77.3

Q ss_pred             CCCccE--EE-EEeCCCC--EEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-----------cCCeEEE
Q 022019          135 DPTSCV--FA-STTRDHP--IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-----------YNKSVRV  198 (304)
Q Consensus       135 ~~~~~~--l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-----------~d~~i~v  198 (304)
                      .++++.  ++ ....++.  +.++|..+++.+........       ..++|+|||+.|+++           .|+.|.+
T Consensus        28 ~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~-------~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v  100 (368)
T d1mdah_          28 GAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-------SLAVAGHSGSDFALASTSFARSAKGKRTDYVEV  100 (368)
T ss_dssp             CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-------CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEE
T ss_pred             CCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC-------CcceECCCCCEEEEEcccCccccccccCCeEEE
Confidence            455554  22 2344454  67779999998887765432       368999999998853           2577999


Q ss_pred             EEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccC
Q 022019          199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG  266 (304)
Q Consensus       199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  266 (304)
                      ||..+... ...+................++|+|++..++++...++.+.+||+.+++.+..+..+..
T Consensus       101 ~D~~t~~~-~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~  167 (368)
T d1mdah_         101 FDPVTFLP-IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC  167 (368)
T ss_dssp             ECTTTCCE-EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSC
T ss_pred             EECCCCcE-eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc
Confidence            99987421 11111100101111222446899995444444444679999999999998888875543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=8.6e-08  Score=78.25  Aligned_cols=209  Identities=13%  Similarity=0.067  Sum_probs=115.2

Q ss_pred             EEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEe
Q 022019           66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT  145 (304)
Q Consensus        66 i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  145 (304)
                      ..|.+++.++.. ..+|.|.+||+.++....-+.....              ....+...       .+|||+++++...
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~--------------~~~~~~~~-------~~SpD~~~vl~~~   79 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKI--------------ESLRAIRY-------EISPDREYALFSY   79 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTT--------------TTTTCSEE-------EECTTSSEEEEEE
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccc--------------ccccccee-------EECCCCCeEEEEE
Confidence            358888876653 5578899999976643211111000              00111122       3489999887764


Q ss_pred             C---------CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeec
Q 022019          146 R---------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG  216 (304)
Q Consensus       146 ~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~  216 (304)
                      .         .+.+.++|+.++..........   ....+....|||||+.+|-..++.|.+.+...+.. ......-..
T Consensus        80 ~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~---~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~-~~lt~~g~~  155 (465)
T d1xfda1          80 NVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV---SNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQA-IRVVSTGKE  155 (465)
T ss_dssp             SCCCCSSSCCCSEEEEEESSSCCCEECCCTTC---CSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCC-EEEECCCBT
T ss_pred             cccceeEeeccccEEEEEccCCceeeccCccC---CccccceeeeccCCceEEEEecceEEEEecCCCce-EEEecccCc
Confidence            3         5678999999887544322211   11245568999999999966688898888765321 111100000


Q ss_pred             --cccccc---------cceeEEEeecCCCcEEEEEe-cCCeE---------------------------------EEEe
Q 022019          217 --NKEGQA---------GIMSAIAFSPTHTGMLAIGS-YSQTS---------------------------------AIYR  251 (304)
Q Consensus       217 --~~~~~~---------~~v~~~~~~p~~~~~l~~~~-~dg~i---------------------------------~i~d  251 (304)
                        ...+..         ..-.++.||| +++.||... .+..|                                 .++|
T Consensus       156 ~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d  234 (465)
T d1xfda1         156 GVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIG  234 (465)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEE
T ss_pred             ceeeccccchhhhhhhccccceEEECC-CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEe
Confidence              000000         1124678999 555566544 33333                                 3344


Q ss_pred             cCCceEeEEe------ccccCCeEEEEECCCCcEEEEeeccC---CeEEEEecccceee
Q 022019          252 EDNMELLYVL------HGQEGGVTHVQFSRDGNYLYTGGRKD---PYILCWDLRKAVQV  301 (304)
Q Consensus       252 ~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~~d---~~i~vwd~~~~~~~  301 (304)
                      +.++......      ......+..+.|+|+++.++...+.+   ..|.++|..+|+..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~  293 (465)
T d1xfda1         235 LNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (465)
T ss_dssp             SSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             cCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence            4333211111      11122467899999998766654222   35888888887654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=3.8e-05  Score=57.19  Aligned_cols=158  Identities=11%  Similarity=0.096  Sum_probs=93.3

Q ss_pred             ecCCeEEEEeecCccceeCCCccEEEEEeCCC---CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-
Q 022019          117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDH---PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-  191 (304)
Q Consensus       117 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-  191 (304)
                      .....+...+|       ||||+.||......   .+.+.+...+..........      ......|+|+|+.++ .. 
T Consensus        36 ~~~~~~~sP~w-------SPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~spdg~~i~~~~~  102 (269)
T d2hqsa1          36 RSPQPLMSPAW-------SPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR------HNGAPAFSPDGSKLAFALS  102 (269)
T ss_dssp             EESSCEEEEEE-------CTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS------CEEEEEECTTSSEEEEEEC
T ss_pred             cCCCceeeeEE-------CCCCCEEEEEEeeccCcceeeeecccCceeEEeeeec------ccccceecCCCCeeeEeee
Confidence            34456666666       88999998775543   46777776665544333222      667899999999998 44 


Q ss_pred             cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCe--EEEEecCCceEeEEeccccCCeE
Q 022019          192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT--SAIYREDNMELLYVLHGQEGGVT  269 (304)
Q Consensus       192 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~  269 (304)
                      .++...++..........   ..    ...........+++++...+++...+|.  |.+.++..+.. ..+..+.....
T Consensus       103 ~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~  174 (269)
T d2hqsa1         103 KTGSLNLYVMDLASGQIR---QV----TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQ  174 (269)
T ss_dssp             TTSSCEEEEEETTTCCEE---EC----CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEE
T ss_pred             cCCccceeecccccccce---ee----eeccccccccccccccccceecccccCCceEeeeecccccc-eeeeccccccc
Confidence            444444433332111111   10    1122223455677755656666666664  55556655433 33444566778


Q ss_pred             EEEECCCCcEEEEeeccCCeEEEEec
Q 022019          270 HVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       270 ~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      ...|+|+|+.++..+...+...+|..
T Consensus       175 ~~~~spdg~~~~~~~~~~~~~~i~~~  200 (269)
T d2hqsa1         175 DADVSSDGKFMVMVSSNGGQQHIAKQ  200 (269)
T ss_dssp             EEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred             ccccccccceeEEEeecCCceeeeEe
Confidence            89999999999887744554444443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.55  E-value=6.6e-05  Score=56.91  Aligned_cols=197  Identities=15%  Similarity=0.151  Sum_probs=120.4

Q ss_pred             eEEEEcC-CCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEE
Q 022019           64 KGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA  142 (304)
Q Consensus        64 ~~i~~s~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~  142 (304)
                      -+..|.+ ++.+..+=-..+.|..||.+++..                   ........+.++.+       .+++.+++
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-------------------~~~~~~~~~~~i~~-------~~dg~l~v   74 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRK-------------------TVHALPFMGSALAK-------ISDSKQLI   74 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-------------------EEEECSSCEEEEEE-------EETTEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeE-------------------EEEECCCCcEEEEE-------ecCCCEEE
Confidence            3567887 444545544667888888875532                   11112233444444       55776665


Q ss_pred             EEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-c----CCeEEEEEcCCCCccceeeeeeecc
Q 022019          143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y----NKSVRVFDVHRPGRDFEKYSTLKGN  217 (304)
Q Consensus       143 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~----d~~i~v~d~~~~~~~~~~~~~~~~~  217 (304)
                      + +.+| +.++|..+++.......... .....++.+.++|+|++.++. .    .+.-.+|.+..+ . .   ..+.  
T Consensus        75 a-~~~g-l~~~d~~tg~~~~l~~~~~~-~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g-~-~---~~~~--  144 (295)
T d2ghsa1          75 A-SDDG-LFLRDTATGVLTLHAELESD-LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG-K-V---TKLF--  144 (295)
T ss_dssp             E-ETTE-EEEEETTTCCEEEEECSSTT-CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT-E-E---EEEE--
T ss_pred             E-EeCc-cEEeecccceeeEEeeeecC-CCcccceeeEECCCCCEEEEeccccccccceeEeeecCC-c-E---EEEe--
Confidence            4 4554 89999998876544332221 222367899999999988854 2    234456665442 1 1   1111  


Q ss_pred             ccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCc--------eEeEEeccccCCeEEEEECCCCcEEEEeeccCCe
Q 022019          218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--------ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY  289 (304)
Q Consensus       218 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~  289 (304)
                        ........++|+|++..++++-+..+.|..|++...        .....+.+..+....+++..+|.+.++.- ..+.
T Consensus       145 --~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~-~~g~  221 (295)
T d2ghsa1         145 --ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGA  221 (295)
T ss_dssp             --EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTE
T ss_pred             --eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeee-CCCc
Confidence              112235689999966667777788899999987421        12223334455678899999998776665 6788


Q ss_pred             EEEEeccccee
Q 022019          290 ILCWDLRKAVQ  300 (304)
Q Consensus       290 i~vwd~~~~~~  300 (304)
                      |..||. +|+.
T Consensus       222 V~~~dp-~G~~  231 (295)
T d2ghsa1         222 VDRYDT-DGNH  231 (295)
T ss_dssp             EEEECT-TCCE
T ss_pred             eEEecC-CCcE
Confidence            999996 4443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.55  E-value=1.1e-05  Score=60.62  Aligned_cols=98  Identities=13%  Similarity=0.163  Sum_probs=59.8

Q ss_pred             EEcCC--CCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEE
Q 022019           67 KWSPD--GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST  144 (304)
Q Consensus        67 ~~s~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~  144 (304)
                      ..+||  |+.+|-.+ +|.|.+.|+.+++..                  .+..+.......+|       ||||+.|+..
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~------------------~Lt~~~~~~~~p~~-------SPDG~~iaf~   58 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR------------------KIVSNLGVINNARF-------FPDGRKIAIR   58 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE------------------EEECSSSEEEEEEE-------CTTSSEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE------------------EEecCCCcccCEEE-------CCCCCEEEEE
Confidence            45788  98887654 456888888754321                  12223345555666       8899988866


Q ss_pred             eC-C-----CCEEEEEcCCCeeeEEeecccc-cccccceEEEEECCCCcEEEE
Q 022019          145 TR-D-----HPIHLWDATTGLLRCTYRAYDA-VDEITAAFSVAFNPTGTKIFA  190 (304)
Q Consensus       145 ~~-d-----g~i~i~d~~~~~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~  190 (304)
                      .. +     ..|.++++.+++.......... ...........|+|+|+.|+.
T Consensus        59 ~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          59 VMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             EEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             EeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEE
Confidence            43 2     2477888887766543222111 011124567899999998884

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.1e-06  Score=68.85  Aligned_cols=149  Identities=13%  Similarity=0.131  Sum_probs=90.7

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEc----------CCeEEEEEcCCC
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY----------NKSVRVFDVHRP  204 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~----------d~~i~v~d~~~~  204 (304)
                      .+++.++. -..+|.|.+||+.+++....+.....  ....+....|+||+++++...          .+.+.++|+.++
T Consensus        25 ~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          25 ISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             SSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             eCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccc--cccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            44555443 35678899999988876444433221  122567889999999988542          367899999864


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec-cccCC----------------
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGG----------------  267 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~----------------  267 (304)
                      ..     ..+. ........+....|||+ +..+|-.. ++.|.+.+...+..+.... +....                
T Consensus       102 ~~-----~~l~-~~~~~~~~l~~~~wSPD-G~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~  173 (465)
T d1xfda1         102 DP-----QSLD-PPEVSNAKLQYAGWGPK-GQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (465)
T ss_dssp             CC-----EECC-CTTCCSCCCSBCCBCSS-TTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             ce-----eecc-CccCCccccceeeeccC-CceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhcc
Confidence            21     1111 11223344667899995 44555443 6778888887665443332 21111                


Q ss_pred             -eEEEEECCCCcEEEEeeccCCeEEEEe
Q 022019          268 -VTHVQFSRDGNYLYTGGRKDPYILCWD  294 (304)
Q Consensus       268 -v~~~~~~~~~~~l~~~~~~d~~i~vwd  294 (304)
                       -.++-|||||++||....++..+..+.
T Consensus       174 ~~~a~~WSPDgk~iaf~~~D~s~V~~~~  201 (465)
T d1xfda1         174 THIAHWWSPDGTRLAYAAINDSRVPIME  201 (465)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred             ccceEEECCCCCeEEEEEecccccceee
Confidence             246789999999998763444444443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.37  E-value=4.7e-05  Score=57.27  Aligned_cols=157  Identities=10%  Similarity=0.151  Sum_probs=102.5

Q ss_pred             CccceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeeccccc-ccccceEEEEECCC-CcEEEEE--cCCeEEEEEcCCC
Q 022019          129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV-DEITAAFSVAFNPT-GTKIFAG--YNKSVRVFDVHRP  204 (304)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~v~~i~~~~~-~~~l~~~--~d~~i~v~d~~~~  204 (304)
                      |..++++++++++++-.....|++||.. ++.+..+...... ........+++.++ +..+++.  .++.|.+++... 
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g-  102 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG-  102 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS-
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc-
Confidence            5556778999988887778889999965 6666555332211 11113445666554 4455543  566777777543 


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEec--cccCCeEEEEECCCCcEEEE
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVQFSRDGNYLYT  282 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~  282 (304)
                       ..   ...+.   .........+++.+ ++.++++....+.+.+++. +++.+..+.  .+......+++.++|..+++
T Consensus       103 -~~---~~~~~---~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~  173 (279)
T d1q7fa_         103 -QF---VRKFG---ATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS  173 (279)
T ss_dssp             -CE---EEEEC---TTTCSCEEEEEECT-TSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             -cc---eeecC---CCcccccceecccc-CCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEee
Confidence             11   11111   22234467889998 6778887777888999986 456666653  44557888999999987777


Q ss_pred             eeccCCeEEEEeccc
Q 022019          283 GGRKDPYILCWDLRK  297 (304)
Q Consensus       283 ~~~~d~~i~vwd~~~  297 (304)
                      .. ..+.|.+||...
T Consensus       174 d~-~~~~V~~~d~~G  187 (279)
T d1q7fa_         174 DN-RAHCVKVFNYEG  187 (279)
T ss_dssp             EG-GGTEEEEEETTC
T ss_pred             ec-cccceeeeecCC
Confidence            77 889999998743

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=0.0012  Score=48.85  Aligned_cols=206  Identities=13%  Similarity=0.155  Sum_probs=119.2

Q ss_pred             CCCCceeEEEEcCCCCeEEEe-cCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCC
Q 022019           58 IPNNFLKGIKWSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP  136 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  136 (304)
                      .+...+.+|+|.+..+.+.-+ ..++.|+..++......                 .+....-..+..+++       +.
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~-----------------~v~~~~~~~p~~iAv-------D~   88 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-----------------TIIRQDLGSPEGIAL-------DH   88 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-----------------EEECTTCCCEEEEEE-------ET
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE-----------------EEEEeccccccEEEE-------ec
Confidence            344568889999866655544 55678888887643221                 011111123334433       43


Q ss_pred             Cc-cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceeeee
Q 022019          137 TS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       137 ~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      -+ ++.++-...+.|.+.++.............     ..+..++++|...+++ +. ..+..+|+.....+.....   
T Consensus        89 ~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l-----~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~---  160 (263)
T d1npea_          89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL-----VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI---  160 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-----SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE---
T ss_pred             cCCeEEEeccCCCEEEEEecCCceEEEEecccc-----cCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee---
Confidence            34 444455567789999987654332222211     2678999999887777 43 2233344433322222111   


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEE
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW  293 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vw  293 (304)
                      +.   ...-....++++++.++.++.+-...+.|...|+........+.+... ..++++.  +.+|+.+....+.|...
T Consensus       161 i~---~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~  234 (263)
T d1npea_         161 LA---QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAM  234 (263)
T ss_dssp             EE---CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             ee---eecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE--CCEEEEEECCCCEEEEE
Confidence            11   112234678999985666666666788999999976555444444333 4577775  55666665367889999


Q ss_pred             ecccceee
Q 022019          294 DLRKAVQV  301 (304)
Q Consensus       294 d~~~~~~~  301 (304)
                      |..+++.+
T Consensus       235 ~~~~g~~~  242 (263)
T d1npea_         235 DLAISKEM  242 (263)
T ss_dssp             ETTTTEEE
T ss_pred             ECCCCccc
Confidence            99887654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.90  E-value=0.00091  Score=52.17  Aligned_cols=149  Identities=7%  Similarity=0.011  Sum_probs=90.0

Q ss_pred             CCccEEEEEe-CCCCEEEEEcCCCeeeEEeecccccccccceEEEEECC--CCcEEEEE-cC------------------
Q 022019          136 PTSCVFASTT-RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP--TGTKIFAG-YN------------------  193 (304)
Q Consensus       136 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~-~d------------------  193 (304)
                      +||+++++.. .+..|.+-|+++.+.......+...    .+..+...+  ...++++. .+                  
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~----~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK----GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC----SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCC----CCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence            4788888876 5788999999999887766553321    445566654  44566543 31                  


Q ss_pred             CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCC---------------eEEEEec------
Q 022019          194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---------------TSAIYRE------  252 (304)
Q Consensus       194 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---------------~i~i~d~------  252 (304)
                      +.+.++|..+...    ..++.-     ......+.++| +++++++.+.+.               .+.+++.      
T Consensus       173 ~~~t~ID~~tm~V----~~QV~V-----~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~a  242 (459)
T d1fwxa2         173 NVFTAVDADKWEV----AWQVLV-----SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  242 (459)
T ss_dssp             EEEEEEETTTTEE----EEEEEE-----SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             eEEEEEecCCceE----EEEeee-----CCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHh
Confidence            2356777765321    111110     12356789999 555666665432               2444443      


Q ss_pred             -----------------CCc---eEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccce
Q 022019          253 -----------------DNM---ELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAV  299 (304)
Q Consensus       253 -----------------~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~  299 (304)
                                       +..   ..+..+... .....+..+|||+++++++..+.++.|+|+++-.
T Consensus       243 v~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~  308 (459)
T d1fwxa2         243 IAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD  308 (459)
T ss_dssp             HHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred             hhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhh
Confidence                             211   111222222 2346789999999999988789999999997643

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.84  E-value=0.0025  Score=47.00  Aligned_cols=152  Identities=13%  Similarity=0.023  Sum_probs=92.4

Q ss_pred             CCCccEEEE-EeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccceee
Q 022019          135 DPTSCVFAS-TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       135 ~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~~~~  211 (304)
                      ++..+.+.. -..++.|+..++..+..........     ..+.+++++.-+..|+ +. ..+.|.+.++.....     
T Consensus        44 D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~-----~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-----  113 (263)
T d1npea_          44 DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL-----GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-----  113 (263)
T ss_dssp             ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC-----CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----
T ss_pred             EeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecc-----ccccEEEEeccCCeEEEeccCCCEEEEEecCCceE-----
Confidence            434444444 4566788888887655443332211     1677899988777776 54 678999999875321     


Q ss_pred             eeeeccccccccceeEEEeecCCCcEEEEEecCC--eEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCe
Q 022019          212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPY  289 (304)
Q Consensus       212 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~  289 (304)
                      ..+.   ......+..++++|..+.++.+-...+  .|.-.++............-.....+++++.+..|+.+....+.
T Consensus       114 ~~l~---~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~  190 (263)
T d1npea_         114 RVLF---DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR  190 (263)
T ss_dssp             EEEE---CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEe---cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCE
Confidence            1111   112234789999996665555543323  34444554433332233233456899999888888776546788


Q ss_pred             EEEEecccce
Q 022019          290 ILCWDLRKAV  299 (304)
Q Consensus       290 i~vwd~~~~~  299 (304)
                      |...++....
T Consensus       191 I~~~~~~g~~  200 (263)
T d1npea_         191 AECLNPAQPG  200 (263)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEEECCCCC
Confidence            9888886543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.83  E-value=0.0027  Score=48.73  Aligned_cols=195  Identities=10%  Similarity=0.063  Sum_probs=100.4

Q ss_pred             ceeEEEEcCCCCeEEEecC------------CCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecC
Q 022019           62 FLKGIKWSPDGSSFLTSSE------------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP  129 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~------------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  129 (304)
                      .--+|...|+|..+++++.            .|.|.++|+++.......               +.... .......|.|
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~---------------l~~~~-~~~~~~~f~P   99 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSE---------------LEIIG-NTLDISSFNP   99 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEE---------------CEEEC-SSSCGGGCCE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceE---------------EEecC-CCCCCcceec
Confidence            3456888999987776642            378888888754321100               00000 1111122444


Q ss_pred             cccee--CCCcc-EEEEEe---CCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE---c-C------
Q 022019          130 HMSAS--DPTSC-VFASTT---RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG---Y-N------  193 (304)
Q Consensus       130 ~~~~~--~~~~~-~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~---~-d------  193 (304)
                      +.+++  .+++. +|++..   ...+|-+|++........+...-........+.+.+..++.++++-   . +      
T Consensus       100 hGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~  179 (340)
T d1v04a_         100 HGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSW  179 (340)
T ss_dssp             EEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHH
T ss_pred             cceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhh
Confidence            44332  33444 344432   3456888887543322121111111222357888888888877762   1 1      


Q ss_pred             ------CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCce---EeEEeccc
Q 022019          194 ------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHGQ  264 (304)
Q Consensus       194 ------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~  264 (304)
                            +...+|......  .   ....    ..-.....++++|++..++++-+..+.|++|++....   ....+. -
T Consensus       180 e~~~~~~~g~v~~~~~~~--~---~~~~----~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l  249 (340)
T d1v04a_         180 EMHLGLAWSFVTYYSPND--V---RVVA----EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-F  249 (340)
T ss_dssp             HHHTTCCCEEEEEECSSC--E---EEEE----EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-C
T ss_pred             hHhhcCCceeEEEEcCCc--e---EEEc----CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-C
Confidence                  233444443321  1   1111    1123478899999666677777778999999987443   222222 2


Q ss_pred             cCCeEEEEECCC-CcEEEE
Q 022019          265 EGGVTHVQFSRD-GNYLYT  282 (304)
Q Consensus       265 ~~~v~~~~~~~~-~~~l~~  282 (304)
                      .+..-.+.+.+. |.+.++
T Consensus       250 ~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         250 DTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             SSEEEEEEECTTTCCEEEE
T ss_pred             CCCCCccEEecCCCEEEEE
Confidence            344567777754 444433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=0.0029  Score=46.76  Aligned_cols=207  Identities=7%  Similarity=-0.010  Sum_probs=115.3

Q ss_pred             CCCceeEEEEcCCCCeEEEe-cCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCC
Q 022019           59 PNNFLKGIKWSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT  137 (304)
Q Consensus        59 h~~~V~~i~~s~~~~~l~s~-~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  137 (304)
                      ....+.+|+|.+..+.|.-. ..++.|...++.......             ....+....       ...|..+++++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~-------------~~~~~~~~~-------~~~p~glAvD~~   87 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-------------SYDTVISRD-------IQAPDGLAVDWI   87 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------CEEEECSS-------CSCCCEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCc-------------ceEEEEeCC-------CCCcceEEEeec
Confidence            44567889999877665544 456667666654221100             000011111       122333344444


Q ss_pred             c-cEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE--cCCeEEEEEcCCCCccceeeee
Q 022019          138 S-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       138 ~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~--~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      + ++.++-...+.|.+.++..............     ....++++|...+++ +.  ..+.|.-.++...  ...   .
T Consensus        88 ~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~-----~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs--~~~---~  157 (266)
T d1ijqa1          88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-----KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIY---S  157 (266)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTC-----CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--CEE---E
T ss_pred             cceEEEEecCCCEEEeEecCCceEEEEEcCCCC-----CcceEEEEcccCeEEEeccCCCcceeEeccCCC--cee---c
Confidence            4 4445445667899999876554443332222     567899999766666 43  3456666666542  111   1


Q ss_pred             eeccccccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEe--ccccCCeEEEEECCCCcEEEEeeccCCeEE
Q 022019          214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL--HGQEGGVTHVQFSRDGNYLYTGGRKDPYIL  291 (304)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~  291 (304)
                      +.   ...-....++++++.++.++.+-...+.|...++.........  ........++++.  +.+|+.+...++.|.
T Consensus       158 l~---~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~  232 (266)
T d1ijqa1         158 LV---TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF  232 (266)
T ss_dssp             EE---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             cc---ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEE
Confidence            11   1112336789999966667776677889999998654332222  2222345677775  455666543678888


Q ss_pred             EEeccccee
Q 022019          292 CWDLRKAVQ  300 (304)
Q Consensus       292 vwd~~~~~~  300 (304)
                      ..+..+++.
T Consensus       233 ~~~~~~g~~  241 (266)
T d1ijqa1         233 SANRLTGSD  241 (266)
T ss_dssp             EEETTTCCC
T ss_pred             EEECCCCcc
Confidence            888777643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.80  E-value=0.0044  Score=48.33  Aligned_cols=198  Identities=15%  Similarity=0.162  Sum_probs=113.2

Q ss_pred             EEEEcC---CCCeEEEec-CCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccE
Q 022019           65 GIKWSP---DGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (304)
Q Consensus        65 ~i~~s~---~~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (304)
                      .+.+..   ||++|+... .+++|.+-|+++.+....                +..........++..+     .|+..+
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kI----------------i~iPn~~~~HG~r~~~-----~p~T~Y  147 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAI----------------LEIPNAKGIHGLRPQK-----WPRSNY  147 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEE----------------EECSSCCSEEEEEECC-----SSBCSE
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEE----------------EecCCCCCCceeeccc-----CCCeEE
Confidence            455654   788877665 688999999987654221                1112222333332211     234445


Q ss_pred             EEEEeCC------------------CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-EcC--C-----
Q 022019          141 FASTTRD------------------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN--K-----  194 (304)
Q Consensus       141 l~~~~~d------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~d--~-----  194 (304)
                      ++.++++                  +.+.+.|..+.+.........      ....+.++++|+++++ +.+  .     
T Consensus       148 V~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g------~ld~~~~s~dGK~af~TsyNSE~g~~l~  221 (459)
T d1fwxa2         148 VFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLP  221 (459)
T ss_dssp             EEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred             EEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCC------ChhccccCCCCCEEEEEeccccCCcchh
Confidence            5555442                  235678888888776666544      4557999999999984 422  1     


Q ss_pred             --------eEEEEEc-----------------------CCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec
Q 022019          195 --------SVRVFDV-----------------------HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY  243 (304)
Q Consensus       195 --------~i~v~d~-----------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  243 (304)
                              .+.+++.                       +..... .....+.     -......+.++||+..+++++..
T Consensus       222 e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~-~v~~yIP-----VpKsPHGV~vSPDGKyi~VaGKL  295 (459)
T d1fwxa2         222 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASS-LFTRYIP-----IANNPHGCNMAPDKKHLCVAGKL  295 (459)
T ss_dssp             HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--C-SSEEEEE-----EESSCCCEEECTTSSEEEEECTT
T ss_pred             hcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCc-ceeEEEe-----cCCCCCceEECCCCCEEEEeCCc
Confidence                    1333333                       211000 0000000     01124578999966666666667


Q ss_pred             CCeEEEEecCCce------------EeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEeccc
Q 022019          244 SQTSAIYREDNME------------LLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRK  297 (304)
Q Consensus       244 dg~i~i~d~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~  297 (304)
                      +.++.++|++...            ...... ..-.-..-+|+..|. .+++-.-|..|.-|++..
T Consensus       296 s~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~~g~-aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         296 SPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGN-AYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             SSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECTTSE-EEEEETTTTEEEEEEHHH
T ss_pred             CCcEEEEEehhhhhhhcccCCccccEEeecc-cCcCccccccCCCce-EEEEeeccceEEEEecch
Confidence            8999999986421            111111 223456788998884 555544899999999864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.69  E-value=0.00067  Score=50.35  Aligned_cols=114  Identities=12%  Similarity=0.160  Sum_probs=65.1

Q ss_pred             eCCC--ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cCC-----eEEEEEcCCC
Q 022019          134 SDPT--SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK-----SVRVFDVHRP  204 (304)
Q Consensus       134 ~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~-----~i~v~d~~~~  204 (304)
                      .+|+  |+.++..+ +|.|.+.|+.+++... +.....     .+....|||||+.|+ +. .++     .|.+++...+
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt~~~~-----~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-IVSNLG-----VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEEE-EECSSS-----EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEEE-EecCCC-----cccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            3677  88887765 4569999999887654 333322     677899999999998 43 222     3666666543


Q ss_pred             CccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC------CeEEEEecCCceE
Q 022019          205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMEL  257 (304)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~  257 (304)
                        ....+..................|+| ++..|+.....      ..+...+...+..
T Consensus        79 --~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  134 (281)
T d1k32a2          79 --EIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDGINF  134 (281)
T ss_dssp             --EEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred             --ceEEeeecCCCccCccccccccccCC-CCCEEEEEEccCCCccceeeeeecCCCcee
Confidence              11111111111111223356788999 55555544321      2355566655544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.32  E-value=0.014  Score=44.51  Aligned_cols=157  Identities=9%  Similarity=0.178  Sum_probs=88.4

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EE-cC---CeEEEEEcCCCCccce
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN---KSVRVFDVHRPGRDFE  209 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d---~~i~v~d~~~~~~~~~  209 (304)
                      +|+..+++.....+-|++||+. |+.+..+.... .....-...+.+......++ ++ .+   ..|.+|.+........
T Consensus        37 ~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr-~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          37 NPQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGK-LNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             CGGGCEEEEEETTSCCEEEETT-CCEEEECCSSC-EEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             CcCccEEEEEcCcCCEEEEcCC-CcEEEecccCC-cCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            4556677777777779999995 76666554321 12222223334443343444 33 22   3688888864322222


Q ss_pred             eeeeeeccccccccceeEEEe--ecCCCc-EEEEEecCCeEEEEecC---Cc----eEeEEeccccCCeEEEEECCCCcE
Q 022019          210 KYSTLKGNKEGQAGIMSAIAF--SPTHTG-MLAIGSYSQTSAIYRED---NM----ELLYVLHGQEGGVTHVQFSRDGNY  279 (304)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~--~p~~~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~v~~~~~~~~~~~  279 (304)
                      .+.............+..+|+  +|.++. ++++...+|.+..|.+.   .+    +.+.++. -...+-.|.+.+....
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGS  193 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCc
Confidence            111111000111123667776  665554 56667778999888663   22    4555665 3456899999999889


Q ss_pred             EEEeeccCCeEEEEec
Q 022019          280 LYTGGRKDPYILCWDL  295 (304)
Q Consensus       280 l~~~~~~d~~i~vwd~  295 (304)
                      |+.+- .+.-|..++.
T Consensus       194 LyisE-E~~Giw~~~a  208 (353)
T d1h6la_         194 LYIAE-EDEAIWKFSA  208 (353)
T ss_dssp             EEEEE-TTTEEEEEES
T ss_pred             EEEec-CccceEEEEe
Confidence            99887 6655544444

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.06  E-value=0.037  Score=42.14  Aligned_cols=159  Identities=13%  Similarity=0.135  Sum_probs=89.4

Q ss_pred             eeCCCccEEEEEeC------------CCCEEEEEcCCCeee-EEeeccccc--ccccceEEEEE--CCCCcE-EE-EE--
Q 022019          133 ASDPTSCVFASTTR------------DHPIHLWDATTGLLR-CTYRAYDAV--DEITAAFSVAF--NPTGTK-IF-AG--  191 (304)
Q Consensus       133 ~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~-~~~~~~~~~--~~~~~v~~i~~--~~~~~~-l~-~~--  191 (304)
                      ...|+|..+++++.            .|.|.++|+.+.... ..+......  ........+.+  .++|+. |+ +.  
T Consensus        41 ~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~  120 (340)
T d1v04a_          41 EILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP  120 (340)
T ss_dssp             EECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECS
T ss_pred             EECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEecc
Confidence            33667766666532            488999999865432 222211110  00012234443  556653 33 32  


Q ss_pred             -cCCeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEe-----------------cCCeEEEEecC
Q 022019          192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-----------------YSQTSAIYRED  253 (304)
Q Consensus       192 -~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-----------------~dg~i~i~d~~  253 (304)
                       ...+|.+|++...+...........   ........+++.. ++.+++|-.                 ..+.+.-||..
T Consensus       121 ~~~~~ieif~~~~~~~~l~~~~~v~~---~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         121 GSSSTVEVFKFQEEEKSLLHLKTIRH---KLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             TTCCEEEEEEEETTTTEEEEEEEECC---TTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             CCCceeEEEEEeCCCCeEEEEeecCC---ccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence             4568999998765444333333322   2233467888888 566777631                 11234444443


Q ss_pred             CceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          254 NMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       254 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      ..+.  ... .-...+.++++||+++|+.+....++|++|++...
T Consensus       197 ~~~~--~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         197 DVRV--VAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             CEEE--EEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             ceEE--EcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            3222  222 23457899999999988877768889999998754

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.036  Score=40.58  Aligned_cols=152  Identities=16%  Similarity=0.020  Sum_probs=88.2

Q ss_pred             CCCccEEEEE-eCCCCEEEEEcCCCee---eEEeecccccccccceEEEEECCCCcEEE-EE-cCCeEEEEEcCCCCccc
Q 022019          135 DPTSCVFAST-TRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDF  208 (304)
Q Consensus       135 ~~~~~~l~~~-~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~-~d~~i~v~d~~~~~~~~  208 (304)
                      ++..+.+... ...+.|+-.++.....   ........    ...+.++++++.+..|+ +. ..+.|.+.++.....  
T Consensus        38 d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~----~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~--  111 (266)
T d1ijqa1          38 EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--  111 (266)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEC--------CEEEECSS----CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--
T ss_pred             EeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCC----CCCcceEEEeeccceEEEEecCCCEEEeEecCCceE--
Confidence            4444444444 3456676666643221   11111111    11566899998777777 44 678999999875321  


Q ss_pred             eeeeeeeccccccccceeEEEeecCCCcEEEEEe-cCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccC
Q 022019          209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKD  287 (304)
Q Consensus       209 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d  287 (304)
                         ..+.   .........++++|..+.++.+-. ..+.|.-.++............-....++++++.+..|+.+....
T Consensus       112 ---~~~~---~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~  185 (266)
T d1ijqa1         112 ---KTLF---RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  185 (266)
T ss_dssp             ---EEEE---ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             ---EEEE---cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCc
Confidence               1111   112234688999995665555532 345677777754443333333335678999999888888775467


Q ss_pred             CeEEEEecccc
Q 022019          288 PYILCWDLRKA  298 (304)
Q Consensus       288 ~~i~vwd~~~~  298 (304)
                      +.|...++...
T Consensus       186 ~~I~~~~~dG~  196 (266)
T d1ijqa1         186 HSISSIDVNGG  196 (266)
T ss_dssp             TEEEEEETTSC
T ss_pred             CEEEEEECCCC
Confidence            88988888653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.92  E-value=0.062  Score=42.39  Aligned_cols=213  Identities=13%  Similarity=0.020  Sum_probs=103.1

Q ss_pred             CCCCceeEEEEcCCCCeEEEe-----cCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccc
Q 022019           58 IPNNFLKGIKWSPDGSSFLTS-----SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS  132 (304)
Q Consensus        58 ~h~~~V~~i~~s~~~~~l~s~-----~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  132 (304)
                      ++.-.+...++||+++++|.+     +.-..++++|+.+++.....               +. .  .....+.|     
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~---------------i~-~--~~~~~~~W-----  178 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV---------------LE-R--VKFSCMAW-----  178 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE---------------EE-E--ECSCCEEE-----
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc---------------cc-c--ccccceEE-----
Confidence            344445677889999988743     22347899999977532110               00 0  00123344     


Q ss_pred             eeCCCccEEEEEeCC----------------CCEEEEEcCCCeee--EEeecccccccccceEEEEECCCCcEEEE--E-
Q 022019          133 ASDPTSCVFASTTRD----------------HPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFA--G-  191 (304)
Q Consensus       133 ~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~--~-  191 (304)
                        .++++.|+....+                ..|..+.+.+....  ..+....   ....+..+..++++++++.  . 
T Consensus       179 --~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d---~~~~~~~~~~s~d~~~l~i~~~~  253 (430)
T d1qfma1         179 --THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD---EPKWMGGAELSDDGRYVLLSIRE  253 (430)
T ss_dssp             --CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT---CTTCEEEEEECTTSCEEEEEEEC
T ss_pred             --cCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccccccccccc---CCceEEeeeccCCcceeeEEeec
Confidence              6677777654332                24777777665432  2233221   1224667888999998872  2 


Q ss_pred             -cCCe--EEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEec---CCeEEEEecCCceE--eEE-ec
Q 022019          192 -YNKS--VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQTSAIYREDNMEL--LYV-LH  262 (304)
Q Consensus       192 -~d~~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~~--~~~-~~  262 (304)
                       .+..  +.+.|+.........................-+ .+. ++.+++....   ++.|...++.....  ... +.
T Consensus       254 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~  331 (430)
T d1qfma1         254 GCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV-TNE-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP  331 (430)
T ss_dssp             SSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEE-EEE-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEEC
T ss_pred             cCCccEEEEEeeCCCcccccccccceeEeecccccceEEE-ecC-CceeecccCcccccceeEEecCCCCccccceEEec
Confidence             2333  445555432221111111100001111112222 222 3444444332   35666666654321  122 33


Q ss_pred             cccCCeEEEEECCCCcEEEEeeccCC--eEEEEeccccee
Q 022019          263 GQEGGVTHVQFSRDGNYLYTGGRKDP--YILCWDLRKAVQ  300 (304)
Q Consensus       263 ~~~~~v~~~~~~~~~~~l~~~~~~d~--~i~vwd~~~~~~  300 (304)
                      .+...+..-.+...+.+|+..-..++  .|+++++.+++.
T Consensus       332 ~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~  371 (430)
T d1qfma1         332 EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL  371 (430)
T ss_dssp             CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             ccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcE
Confidence            34444544344334455554432554  578888876643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.88  E-value=0.046  Score=40.29  Aligned_cols=197  Identities=12%  Similarity=0.097  Sum_probs=115.9

Q ss_pred             EEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEEEEEe
Q 022019           66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT  145 (304)
Q Consensus        66 i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~  145 (304)
                      .-.+|..+.||.-+ ..++.+||+++.....                  ...-..+|.-..|.        +.+.|+...
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klk------------------s~~~~e~VvfWkWi--------s~~~L~lVT  120 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMK------------------AHTMTDDVTFWKWI--------SLNTVALVT  120 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEE------------------EEECSSCCCEEEES--------SSSEEEEEC
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhc------------------eEEcCCCcEEEEec--------CCCEEEEEc
Confidence            34567777666544 4589999998654321                  11223456566663        223455554


Q ss_pred             CCCCEEEEEcCCC-eeeEEeecccccccccceEEEEECCCCcEEE-EE---cC----CeEEEEEcCCCCcc---------
Q 022019          146 RDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YN----KSVRVFDVHRPGRD---------  207 (304)
Q Consensus       146 ~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~---~d----~~i~v~d~~~~~~~---------  207 (304)
                       +..|+-|+++.. .+...+..+.... ...|..-..+++.+.++ +|   .+    |.+.+|..+.....         
T Consensus       121 -~taVYHW~~~g~s~P~k~fdR~~~L~-~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F  198 (327)
T d1utca2         121 -DNAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASF  198 (327)
T ss_dssp             -SSEEEEEESSSSCCCEEEEECCGGGT-TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEE
T ss_pred             -CCceEEEcccCCCCchhhhhhccccc-CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeee
Confidence             446999999543 3555555555432 34677777788888776 33   22    45667776542100         


Q ss_pred             ----------ceeee--------------------------------eeeccccccccceeEEEeecCCCcEEEEEecCC
Q 022019          208 ----------FEKYS--------------------------------TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ  245 (304)
Q Consensus       208 ----------~~~~~--------------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  245 (304)
                                ...+.                                .+....+...+-..++..++ .-.++..-+.-|
T Consensus       199 ~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G  277 (327)
T d1utca2         199 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYG  277 (327)
T ss_dssp             EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTS
T ss_pred             EEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCc
Confidence                      00000                                00000111122244566666 344788889999


Q ss_pred             eEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEE
Q 022019          246 TSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCW  293 (304)
Q Consensus       246 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vw  293 (304)
                      .|++||+.++.++..-+-....|...+-+.+..-+++.. .+|.|..-
T Consensus       278 ~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VN-r~GqVl~v  324 (327)
T d1utca2         278 YIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN-RKGQVLSV  324 (327)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEE-TTSEEEEE
T ss_pred             EEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEEC-CCCeEEEE
Confidence            999999999999988776677777666555555566677 78876543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.77  E-value=0.037  Score=42.74  Aligned_cols=153  Identities=10%  Similarity=0.131  Sum_probs=85.5

Q ss_pred             CCCccEEEEEeCCC-----------CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE--cCCeEEEEEc
Q 022019          135 DPTSCVFASTTRDH-----------PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDV  201 (304)
Q Consensus       135 ~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~d~~i~v~d~  201 (304)
                      ..+|++++.|+.+.           .+.+||..+++..........  +........+.+++++++.|  ....+.+||.
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~--~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~  105 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK--HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDS  105 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS--CCCSSCEEEECTTSCEEEECSSSTTCEEEEEG
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCC--cccceeEEEEecCCcEEEeecCCCcceeEecC
Confidence            45788888887431           267999998765432211111  11133467888999999976  4468999998


Q ss_pred             CCCCccceeeeeeeccccccccceeEEEeecCCCcEEEEEecC------CeEEEEecCCceEeEE--ec-------ccc-
Q 022019          202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS------QTSAIYREDNMELLYV--LH-------GQE-  265 (304)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~-------~~~-  265 (304)
                      .+.  ..   ..... ... ......++..+ ++++++.|+.+      ..+.+||..+.+-...  ..       .+. 
T Consensus       106 ~~~--~w---~~~~~-~~~-~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~  177 (387)
T d1k3ia3         106 SSD--SW---IPGPD-MQV-ARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG  177 (387)
T ss_dssp             GGT--EE---EECCC-CSS-CCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred             ccC--cc---ccccc-ccc-cccccceeeec-CCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccc
Confidence            763  11   11111 111 11123456666 66788877653      3589999887653211  10       000 


Q ss_pred             ----CCeEEEEECCCCcEEEEeeccCCeEEEEecccc
Q 022019          266 ----GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       266 ----~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~  298 (304)
                          ..-..+...++|+.+..++ .++.+.+++..+.
T Consensus       178 ~~~~~~~~~~~~~~~G~~~~~g~-~~~~~~~~~~~~~  213 (387)
T d1k3ia3         178 LYRSDNHAWLFGWKKGSVFQAGP-STAMNWYYTSGSG  213 (387)
T ss_dssp             GGTTTCSCCEEECGGGCEEECCS-SSEEEEEECSTTC
T ss_pred             eeeccceeEEEEeCCCCEEEecC-cCCcEEecCcccC
Confidence                0011122345677666666 6677777766554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.53  E-value=0.087  Score=38.80  Aligned_cols=155  Identities=12%  Similarity=0.123  Sum_probs=91.5

Q ss_pred             CCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeee
Q 022019          135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL  214 (304)
Q Consensus       135 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~  214 (304)
                      +|..+.|+.=+ ..++.+||+++.+.+..+....      .|.--.|-.+ +.|+.-.+..|+-|+++....+.+.+.. 
T Consensus        71 hP~~~IiALra-g~~LQiFnletK~klks~~~~e------~VvfWkWis~-~~L~lVT~taVYHW~~~g~s~P~k~fdR-  141 (327)
T d1utca2          71 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------DVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDR-  141 (327)
T ss_dssp             CSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS------CCCEEEESSS-SEEEEECSSEEEEEESSSSCCCEEEEEC-
T ss_pred             CCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC------CcEEEEecCC-CEEEEEcCCceEEEcccCCCCchhhhhh-
Confidence            66777776665 5579999999999888877765      6667778654 4555456778999999654333222211 


Q ss_pred             eccccccccceeEEEeecCCCcEEEEEe---c----CCeEEEEecCCce-------------------------------
Q 022019          215 KGNKEGQAGIMSAIAFSPTHTGMLAIGS---Y----SQTSAIYREDNME-------------------------------  256 (304)
Q Consensus       215 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~----dg~i~i~d~~~~~-------------------------------  256 (304)
                      ...+  ....|..-..++ +.++++..+   .    .|.+.+|..+...                               
T Consensus       142 ~~~L--~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r  218 (327)
T d1utca2         142 HSSL--AGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR  218 (327)
T ss_dssp             CGGG--TTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred             cccc--cCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEEC
Confidence            1111  223455566666 343333221   1    2456666654320                               


Q ss_pred             -----EeEEec-cc----------------------cCCeEEEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          257 -----LLYVLH-GQ----------------------EGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       257 -----~~~~~~-~~----------------------~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                           .+..+. ++                      .+--.++..++.-..++... +-|.|++||+.++.++.
T Consensus       219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT-K~G~i~lyDleTgt~i~  291 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT-KYGYIHLYDLETGTCIY  291 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE-TTSEEEEEETTTCCEEE
T ss_pred             CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEe-cCcEEEEEEcccccEEE
Confidence                 000000 01                      11233455555566777778 89999999999998875

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.49  E-value=0.14  Score=40.63  Aligned_cols=59  Identities=14%  Similarity=0.274  Sum_probs=37.3

Q ss_pred             cceeCCCccEEEEEeCCCCEEEEEcCCCeeeEEeecccc---cccccceEEEEECCC---CcEEE
Q 022019          131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA---VDEITAAFSVAFNPT---GTKIF  189 (304)
Q Consensus       131 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~v~~i~~~~~---~~~l~  189 (304)
                      .++|.|++++|++--..|.|++++..++...........   .........|+|+|+   ..+++
T Consensus        31 ~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iY   95 (450)
T d1crua_          31 ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY   95 (450)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred             EEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEE
Confidence            344478998887765579999998877765443332211   122336789999995   34444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.25  E-value=0.16  Score=38.93  Aligned_cols=117  Identities=15%  Similarity=0.128  Sum_probs=64.5

Q ss_pred             eCCCccEEEEEeCC-CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cC------CeEEEEEcCCCC
Q 022019          134 SDPTSCVFASTTRD-HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN------KSVRVFDVHRPG  205 (304)
Q Consensus       134 ~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d------~~i~v~d~~~~~  205 (304)
                      +.+++.+++.|+.+ ..+.+||..+......-....    ...-.+.+..++|++++.| .+      ..+.+||..+. 
T Consensus        83 ~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~----~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~-  157 (387)
T d1k3ia3          83 MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV----ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK-  157 (387)
T ss_dssp             ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS----CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT-
T ss_pred             EecCCcEEEeecCCCcceeEecCccCcccccccccc----cccccceeeecCCceeeeccccccccccceeeeecCCCC-
Confidence            36789999988765 589999998876543221111    1133467778899988854 22      35899998763 


Q ss_pred             ccceeeeeeecc---ccccccc----eeEEEe-ecCCCcEEEEEecCCeEEEEecCCceE
Q 022019          206 RDFEKYSTLKGN---KEGQAGI----MSAIAF-SPTHTGMLAIGSYSQTSAIYREDNMEL  257 (304)
Q Consensus       206 ~~~~~~~~~~~~---~~~~~~~----v~~~~~-~p~~~~~l~~~~~dg~i~i~d~~~~~~  257 (304)
                       ....+......   ...+...    -....| -+ ++.++..+..++.+.+++..+...
T Consensus       158 -~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         158 -TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWK-KGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             -EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECG-GGCEEECCSSSEEEEEECSTTCEE
T ss_pred             -ceeecCCCcccccccccccceeeccceeEEEEeC-CCCEEEecCcCCcEEecCcccCcE
Confidence             11111110000   0000000    011112 23 556677777777788888776653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.87  E-value=0.24  Score=37.58  Aligned_cols=118  Identities=10%  Similarity=0.164  Sum_probs=72.0

Q ss_pred             ceEEEEE--CCC-CcEEE-EE-cCCeEEEEEcCCCCcc---ceeeeeeeccccccccceeEEEeecCCCcEEEEEecCCe
Q 022019          175 AAFSVAF--NPT-GTKIF-AG-YNKSVRVFDVHRPGRD---FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT  246 (304)
Q Consensus       175 ~v~~i~~--~~~-~~~l~-~~-~d~~i~v~d~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~  246 (304)
                      .++.+++  ++. +...+ +. .+|.+..|.+......   ......+.     ....+..|.+.+ ....|+.+-++..
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-----~~~q~EGCVvDd-e~~~LyisEE~~G  202 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-----MNSQTEGMAADD-EYGSLYIAEEDEA  202 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-----CSSCEEEEEEET-TTTEEEEEETTTE
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-----CCCccceEEEeC-CCCcEEEecCccc
Confidence            4566666  664 54433 54 8899998887542221   12222221     234588999999 6667888888887


Q ss_pred             EEEEecCC-----ceEeEEecc--ccCCeEEEEEC--CCC-cEEEEeeccCCeEEEEecccc
Q 022019          247 SAIYREDN-----MELLYVLHG--QEGGVTHVQFS--RDG-NYLYTGGRKDPYILCWDLRKA  298 (304)
Q Consensus       247 i~i~d~~~-----~~~~~~~~~--~~~~v~~~~~~--~~~-~~l~~~~~~d~~i~vwd~~~~  298 (304)
                      |+.++...     ...+....+  ....+-.++.-  +++ .||++++..+++..+||..+.
T Consensus       203 iw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         203 IWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             eEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            87777642     223333322  34567777653  333 366666668999999998764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.84  E-value=0.06  Score=44.28  Aligned_cols=55  Identities=7%  Similarity=0.137  Sum_probs=39.9

Q ss_pred             CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       245 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      |.+.-||+.+++.+-...... +..+-..+-.|..|++|+ .||.++.+|.++|+.+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~-~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGT-ADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEEC-CCCeEEEEECCCCcEe
Confidence            568888999998887765322 211112233577888888 9999999999999876

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.35  E-value=0.56  Score=38.27  Aligned_cols=56  Identities=7%  Similarity=0.041  Sum_probs=37.7

Q ss_pred             CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceeee
Q 022019          245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       245 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      |.|.-+|+.+++.+-+.... .+..+-..+..+..+++++ .||.++.+|.++|+.+-
T Consensus       444 G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~-~dg~l~A~Da~tGe~lW  499 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYAT-LDGYLKALDNKDGKELW  499 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEEC-TTSEEEEEETTTCCEEE
T ss_pred             ccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEEC-CCCeEEEEECCCCcEEE
Confidence            56888888888877665421 1111111122466788888 99999999999998763

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.33  E-value=0.095  Score=43.12  Aligned_cols=55  Identities=13%  Similarity=0.209  Sum_probs=40.0

Q ss_pred             CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       245 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      |.|.-+|+.+++.+-....+. ++.+-..+..|..+++|+ .||.++.+|.++|+.+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt-~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGT-GDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeC-CCCeEEEEECCCCcEe
Confidence            668888888888777765332 222222334677888888 9999999999999876

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.27  E-value=0.12  Score=41.02  Aligned_cols=108  Identities=12%  Similarity=0.145  Sum_probs=61.1

Q ss_pred             ceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeeccc--cccccceeEEEeecC---CCcEEEEEecC----
Q 022019          175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK--EGQAGIMSAIAFSPT---HTGMLAIGSYS----  244 (304)
Q Consensus       175 ~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~---~~~~l~~~~~d----  244 (304)
                      ..++|+|.|+++++++- ..|.|++++......  ..+..+....  ..-......|+|+|+   ++.++++-+..    
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~--~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSV--KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCE--EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcE--eecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            56799999999999888 579999998765321  2222221111  122345789999994   24444433211    


Q ss_pred             ------Ce--EEEEecCCc-------e-EeEEec-cccCCeEEEEECCCCcEEEEee
Q 022019          245 ------QT--SAIYREDNM-------E-LLYVLH-GQEGGVTHVQFSRDGNYLYTGG  284 (304)
Q Consensus       245 ------g~--i~i~d~~~~-------~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~  284 (304)
                            +.  +..+.....       + .+..+. ........|.|.|||.+.++.|
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~G  162 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEec
Confidence                  11  333332221       1 111111 1223467899999998777766

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.02  E-value=0.54  Score=38.25  Aligned_cols=55  Identities=9%  Similarity=0.086  Sum_probs=38.6

Q ss_pred             CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       245 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      |.|.-+|+.+++.+-.... ..+..+-.+.-.|.++++|+ .||.++.+|.++|+.+
T Consensus       438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~-~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGT-AAGQMHAYSADKGEAL  492 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             cceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEEC-CCCcEEEEECCCCcEe
Confidence            4677888888887766652 22222222233567888888 9999999999999876

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.75  E-value=0.73  Score=37.46  Aligned_cols=83  Identities=11%  Similarity=0.095  Sum_probs=47.4

Q ss_pred             CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeecccccccccee
Q 022019          148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS  226 (304)
Q Consensus       148 g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~  226 (304)
                      |.|.-+|+.+++.+...+....      ..+-.+.-.+.++++| .||.++-||.++++..    ............+  
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~------~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L----W~~~l~~~~~~~P--  505 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH------WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL----WQFEAQSGIVAAP--  505 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEE----EEEECSSCCCSCC--
T ss_pred             cceEEEeCCCCeEeeeccCCCC------CCCceeEECCCEEEEECCCCcEEEEECCCCcEe----EEEECCCCccccC--
Confidence            5678899999988877665432      1111122235566666 9999999999986332    2222221222222  


Q ss_pred             EEEeecCCCcEEEEEec
Q 022019          227 AIAFSPTHTGMLAIGSY  243 (304)
Q Consensus       227 ~~~~~p~~~~~l~~~~~  243 (304)
                       +.+..++.+++++.+.
T Consensus       506 -~ty~~dGkqyv~v~aG  521 (560)
T d1kv9a2         506 -MTFELAGRQYVAIMAG  521 (560)
T ss_dssp             -EEEEETTEEEEEEEEC
T ss_pred             -EEEEECCEEEEEEEeC
Confidence             4444545566666544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.69  E-value=0.87  Score=37.08  Aligned_cols=160  Identities=14%  Similarity=0.116  Sum_probs=88.0

Q ss_pred             EEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE------cCCeEEEEEcCCCCccceeeee
Q 022019          140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG------YNKSVRVFDVHRPGRDFEKYST  213 (304)
Q Consensus       140 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~------~d~~i~v~d~~~~~~~~~~~~~  213 (304)
                      .++.++.||.+.-.|.++|+............ ...+++--.-.++..++.+      ..|.|+-+|++++.........
T Consensus       117 ~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~-~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  195 (571)
T d2ad6a1         117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKV-GSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGG-TCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEeCCCcEEeeehhhhhhhcccccccccc-ccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEecc
Confidence            57778889999999999998876654432111 0011111111134444432      2678999999986543321111


Q ss_pred             eecc------------------------------ccccccceeEEEeecCCCcEEEEEec----------------CCeE
Q 022019          214 LKGN------------------------------KEGQAGIMSAIAFSPTHTGMLAIGSY----------------SQTS  247 (304)
Q Consensus       214 ~~~~------------------------------~~~~~~~v~~~~~~p~~~~~l~~~~~----------------dg~i  247 (304)
                      ....                              .......-...+++| ...++..+..                ...+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~-~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv  274 (571)
T d2ad6a1         196 GSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             CCcccccccccccccccccCcccccccccCCcccccCCCccccccccch-hcCeeeeecccccCccccccccccccccce
Confidence            0000                              000000112356667 3445554443                2457


Q ss_pred             EEEecCCceEeEEeccccC---------CeEEEEECCCCc---EEEEeeccCCeEEEEecccceeee
Q 022019          248 AIYREDNMELLYVLHGQEG---------GVTHVQFSRDGN---YLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       248 ~i~d~~~~~~~~~~~~~~~---------~v~~~~~~~~~~---~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      .-.|+++++.+-.+.....         .........+|+   .++.++ .+|.+.++|..+|+.+.
T Consensus       275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~-k~G~l~vlDr~tG~~i~  340 (571)
T d2ad6a1         275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID-RNGILYTLNRENGNLIV  340 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC-TTSEEEEEETTTCCEEE
T ss_pred             eeeeccchhheecccccCccccccccccccceeeeeccCccccceeecc-ccceEEEEecCCCcEee
Confidence            7889999998877763221         112222223443   456777 89999999999998763

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.17  E-value=0.71  Score=37.87  Aligned_cols=55  Identities=13%  Similarity=0.120  Sum_probs=38.7

Q ss_pred             CeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEecccceee
Q 022019          245 QTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQV  301 (304)
Q Consensus       245 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~~~~~~~  301 (304)
                      |.|.-||+.+++.+-... +..++.+-..+..|..++.|. .||.++.+|.++|+.+
T Consensus       453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~-~Dg~l~A~Da~TGe~L  507 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGT-LDGYLKARDSDTGDLL  507 (596)
T ss_dssp             EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEEC-CCCeEEEEECCCCcEe
Confidence            578888888888766554 222222222233577888888 9999999999999876

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.59  E-value=1.5  Score=35.65  Aligned_cols=83  Identities=7%  Similarity=0.062  Sum_probs=46.0

Q ss_pred             CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeecccccccccee
Q 022019          148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS  226 (304)
Q Consensus       148 g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~  226 (304)
                      |.+.-||+.+++.+...+....      ..+=...-.+.++++| .|+.++.||.++++..    ............+  
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p------~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L----W~~~~~~~~~~~P--  524 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSP------WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL----WEAPTGTGVVAAP--  524 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS------CCCCEEEETTTEEEEECTTSEEEEEETTTCCEE----EEEECSSCCCSCC--
T ss_pred             ccEEEeCCCCCceEeeecCCCC------CCCceEEEcCCEEEEECCCCeEEEEECCCCcEe----EEEECCCCccccC--
Confidence            4577788888887776654331      1111122246667666 9999999999986432    2222221222233  


Q ss_pred             EEEeecCCCcEEEEEec
Q 022019          227 AIAFSPTHTGMLAIGSY  243 (304)
Q Consensus       227 ~~~~~p~~~~~l~~~~~  243 (304)
                       +.|.-++.+++++.+.
T Consensus       525 -~ty~~~GkQYv~v~~G  540 (573)
T d1kb0a2         525 -STYMVDGRQYVSVAVG  540 (573)
T ss_dssp             -EEEEETTEEEEEEEEC
T ss_pred             -EEEEECCEEEEEEEeC
Confidence             4444445556665543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.29  E-value=2.4  Score=34.59  Aligned_cols=162  Identities=15%  Similarity=0.135  Sum_probs=90.2

Q ss_pred             ccEEEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE-E-----cCCeEEEEEcCCCCccceee
Q 022019          138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-----YNKSVRVFDVHRPGRDFEKY  211 (304)
Q Consensus       138 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~-----~d~~i~v~d~~~~~~~~~~~  211 (304)
                      ...++.++.|+.|.-.|.++|+....+........ ..+++--.--++..++. +     ..|.|+-||+++++...+..
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~-~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVG-STLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT-CBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccc-cccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            44688888999999999999998877654321110 01111000013444442 1     24889999999865433221


Q ss_pred             eeeec------------------------------cccccccceeEEEeecCCCcEEEEEecC----------------C
Q 022019          212 STLKG------------------------------NKEGQAGIMSAIAFSPTHTGMLAIGSYS----------------Q  245 (304)
Q Consensus       212 ~~~~~------------------------------~~~~~~~~v~~~~~~p~~~~~l~~~~~d----------------g  245 (304)
                      .....                              ...+....-..+++.| ...++..+..+                .
T Consensus       200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~-~~~lvy~~tg~~~p~~~~~r~g~n~ys~  278 (596)
T d1w6sa_         200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTM  278 (596)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred             ccCCccccccccccccccccccccccccccCCCCceecCCCcccccccccc-CCCeeecccccccccccccccccccccc
Confidence            11000                              0000111123456677 44455555432                3


Q ss_pred             eEEEEecCCceEeEEecc--ccC-------CeEEEE-ECCCC---cEEEEeeccCCeEEEEecccceeee
Q 022019          246 TSAIYREDNMELLYVLHG--QEG-------GVTHVQ-FSRDG---NYLYTGGRKDPYILCWDLRKAVQVV  302 (304)
Q Consensus       246 ~i~i~d~~~~~~~~~~~~--~~~-------~v~~~~-~~~~~---~~l~~~~~~d~~i~vwd~~~~~~~~  302 (304)
                      .|.-.|+++++.+-.++.  |..       ...-+. -..+|   +.++... .+|.+.++|..+|+.+.
T Consensus       279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~-k~G~~~vlDr~tG~~i~  347 (596)
T d1w6sa_         279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD-RNGIVYTLDRTDGALVS  347 (596)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC-TTSEEEEEETTTCCEEE
T ss_pred             cccccccccccccccccceeccccCCccccceeeeeccccccccccceeccc-cccceeeecCCCCceee
Confidence            477889999998776652  221       111122 13344   3577777 99999999999998763

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.97  E-value=2.1  Score=33.21  Aligned_cols=96  Identities=9%  Similarity=0.038  Sum_probs=55.3

Q ss_pred             eCCCccEEEEE-eCCC----CEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEE-EEcC--------------
Q 022019          134 SDPTSCVFAST-TRDH----PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN--------------  193 (304)
Q Consensus       134 ~~~~~~~l~~~-~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~d--------------  193 (304)
                      ++|++++++.+ +.+|    .++++|+.+++.+...-. ..     ....+.|.++++.|+ +..+              
T Consensus       132 ~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~-----~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         132 FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RV-----KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EE-----CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cc-----cccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            48899888755 3333    589999999987642211 11     224789999999887 4322              


Q ss_pred             --CeEEEEEcCCCCccceeeeeeeccccccccceeEEEeecCCCcEEEE
Q 022019          194 --KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI  240 (304)
Q Consensus       194 --~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~  240 (304)
                        ..|..+.+.+....-..+..    .......+..+..++ ++.+++.
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~----e~d~~~~~~~~~~s~-d~~~l~i  249 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAE----FPDEPKWMGGAELSD-DGRYVLL  249 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEEC----CTTCTTCEEEEEECT-TSCEEEE
T ss_pred             CcceEEEEECCCCccccccccc----cccCCceEEeeeccC-CcceeeE
Confidence              25777777654322211111    112223456677788 5555543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.61  E-value=2.1  Score=32.58  Aligned_cols=193  Identities=10%  Similarity=-0.000  Sum_probs=92.5

Q ss_pred             CceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccE
Q 022019           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (304)
                      ....-++.++...+|+.|+.++ ++|-.+..-....  ..   .............   ..|..+++       +.+  .
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~--~~---~~~~~~~~~~~~i---p~v~~vaf-------s~d--~   98 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHI--TS---DSTPLTFKWEKEI---PDVIFVCF-------HGD--Q   98 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHH--HS---SSCCCCCSEEEEC---TTEEEEEE-------ETT--E
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHh--hc---cCCCCcceeccCC---CCeEEEEe-------eCC--E
Confidence            3466788988777888888775 6676543110000  00   0000111111111   24555555       323  4


Q ss_pred             EEEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcCCeEEEEEcCCCCccceeeeeeeccccc
Q 022019          141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEG  220 (304)
Q Consensus       141 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  220 (304)
                      ++.. .++.+..++...-...........     ++..+.++|. ..++...++.+.++++...... ........  ..
T Consensus        99 l~v~-~~~~l~~~~~~~l~~~~~~~~~~~-----~~~~~~~~p~-~~~l~~~~~~~~~~~l~~~~~~-~~~~~v~~--~~  168 (381)
T d1xipa_          99 VLVS-TRNALYSLDLEELSEFRTVTSFEK-----PVFQLKNVNN-TLVILNSVNDLSALDLRTKSTK-QLAQNVTS--FD  168 (381)
T ss_dssp             EEEE-ESSEEEEEESSSTTCEEEEEECSS-----CEEEEEECSS-EEEEEETTSEEEEEETTTCCEE-EEEESEEE--EE
T ss_pred             EEEE-eCCCEEEEEeeccccccccccccc-----cccceecCCc-eeEEEecCCCEEEEEeccCccc-cccCCcce--EE
Confidence            5444 445678887765333222222221     6778888875 3444568899999999764211 11000000  00


Q ss_pred             cccceeEEEeecCCCcEEEEEecCCeEEEE-ecCCceEeEEeccccCCeEEEEECCCCcEEEEe
Q 022019          221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIY-REDNMELLYVLHGQEGGVTHVQFSRDGNYLYTG  283 (304)
Q Consensus       221 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  283 (304)
                      -.+.+.+++|++ ++..++++..+ ...+- ++.....+.........|.++.|-.+..++++-
T Consensus       169 ~~~~~~~v~ws~-kgkq~v~~~g~-~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         169 VTNSQLAVLLKD-RSFQSFAWRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             ECSSEEEEEETT-SCEEEEEEETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ecCCceEEEEeC-CcEEEEEeCCC-ceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            123366777777 66666665322 11111 111100000001123457888887666665543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.49  E-value=0.72  Score=37.70  Aligned_cols=82  Identities=11%  Similarity=0.141  Sum_probs=48.3

Q ss_pred             CCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEE-cCCeEEEEEcCCCCccceeeeeeecccccccccee
Q 022019          148 HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS  226 (304)
Q Consensus       148 g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~v~  226 (304)
                      |.|.-+|+.+++.....+...      ++.+-..+..+.++++| .||.++-||.++++..    .........+..+  
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~------p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L----W~~~~~~~~~~~P--  533 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL------PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL----WKFQTGSGIVSPP--  533 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS------CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE----EEEECSSCCCSCC--
T ss_pred             CeEEEEcCCCCcEEeecCCCC------CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe----EEEECCCCccccC--
Confidence            668888999998887766543      22221222346666666 8999999999986432    2222222222333  


Q ss_pred             EEEeecCCCcEEEEEe
Q 022019          227 AIAFSPTHTGMLAIGS  242 (304)
Q Consensus       227 ~~~~~p~~~~~l~~~~  242 (304)
                       +.|..++.+++++.+
T Consensus       534 -~ty~~~G~qYv~i~a  548 (582)
T d1flga_         534 -ITWEQDGEQYLGVTV  548 (582)
T ss_dssp             -EEEEETTEEEEEEEE
T ss_pred             -EEEEECCEEEEEEEe
Confidence             456564656666544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.45  E-value=2.2  Score=32.47  Aligned_cols=103  Identities=15%  Similarity=0.078  Sum_probs=59.1

Q ss_pred             ceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccEE
Q 022019           62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF  141 (304)
Q Consensus        62 ~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  141 (304)
                      .|..++|+.+  .|+.. .++.+..++...-....                 ....-..++..+.+.|.         .+
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~p~---------~~  138 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFR-----------------TVTSFEKPVFQLKNVNN---------TL  138 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEE-----------------EEEECSSCEEEEEECSS---------EE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeecccccc-----------------ccccccccccceecCCc---------ee
Confidence            4888999744  45544 34567777765322110                 11112245666666442         56


Q ss_pred             EEEeCCCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEEEcC
Q 022019          142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN  193 (304)
Q Consensus       142 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~d  193 (304)
                      +....++.+.++++..+.............-...+.++.|++.|..++++.+
T Consensus       139 ~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         139 VILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred             EEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCC
Confidence            6667788999999988765433222111112236677888887777776633

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.68  E-value=2.2  Score=29.51  Aligned_cols=202  Identities=9%  Similarity=0.095  Sum_probs=94.5

Q ss_pred             CceeEEEEcCCCCeEEEecCCCeEEEeeCCCCCCccccccccccccCCccceEEEeecCCeEEEEeecCccceeCCCccE
Q 022019           61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV  140 (304)
Q Consensus        61 ~~V~~i~~s~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  140 (304)
                      -.|.+++.. +.+..++|+......+|-++.+++..-.....+     ..   +.--.+.-+..+.+      +.++.+-
T Consensus       104 vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpF-----sF---VtDI~~d~I~G~g~------~~g~~~s  168 (313)
T d2hu7a1         104 MRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGF-----GF---VSDIRGDLIAGLGF------FGGGRVS  168 (313)
T ss_dssp             BEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSC-----EE---EEEEETTEEEEEEE------EETTEEE
T ss_pred             EEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCc-----ce---EEeccCCeEEEEee------ecCCcce
Confidence            446666664 344666787777788988876654221111110     00   00001122222221      1222233


Q ss_pred             EEEEeC-CCCEEEEEcCCCeeeEEeecccccccccceEEEEECCCCcEEEE---EcCCeEEEEEcCCCCccceeeeeeec
Q 022019          141 FASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA---GYNKSVRVFDVHRPGRDFEKYSTLKG  216 (304)
Q Consensus       141 l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~---~~d~~i~v~d~~~~~~~~~~~~~~~~  216 (304)
                      |+++.- .|.+++++...|                .++...+.+..+..+.   .......-+|++.+..  ........
T Consensus       169 fF~adl~SG~lri~tpkeG----------------S~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~y--erve~P~k  230 (313)
T d2hu7a1         169 LFTSNLSSGGLRVFDSGEG----------------SFSSASISPGMKVTAGLETAREARLVTVDPRDGSV--EDLELPSK  230 (313)
T ss_dssp             EEEEETTTEEEEEECCSSE----------------EEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCE--EECCCSSC
T ss_pred             EEEEecccCCEEEecCCCC----------------cccceeEccCceeeeccCCCCceEEEEEecccCce--eeeecCcc
Confidence            444443 555555554433                4555666666666331   1222333457765321  11111000


Q ss_pred             cc-cccccceeEEEeecCCCcEEEEEecCCeEEEEecCCceEeEEeccccCCeEEEEECCCCcEEEEeeccCCeEEEEec
Q 022019          217 NK-EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDL  295 (304)
Q Consensus       217 ~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d~~i~vwd~  295 (304)
                      .+ .-....|+-+-+.| ++++++.+-.||.-++|.  +++.+.+.++.   +..+..- .+...++.++-..--++-.+
T Consensus       231 d~~sy~p~~I~~~~Y~P-dd~L~iiakrdG~s~lF~--nGk~in~p~G~---~~gat~i-~~~iyfshsSL~tP~kI~~~  303 (313)
T d2hu7a1         231 DFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFI--DGERVEAPQGN---HGRVVLW-RGKLVTSHTSLSTPPRIVSL  303 (313)
T ss_dssp             HHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEE--TTEEECCCSSE---EEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             cceeecceEEEeeeeCC-CCcEEEEEecCCchheee--cceEecCCCCc---ccceEEE-CCEEEEeecccCCCceeEEc
Confidence            00 00112244556899 677888999999999997  56766555432   2222221 23322222213334455555


Q ss_pred             ccceeee
Q 022019          296 RKAVQVV  302 (304)
Q Consensus       296 ~~~~~~~  302 (304)
                      .+|+.++
T Consensus       304 ~~~~~~~  310 (313)
T d2hu7a1         304 PSGEPLL  310 (313)
T ss_dssp             TTCCEEE
T ss_pred             CCCCccc
Confidence            5555543